Query 006995
Match_columns 622
No_of_seqs 430 out of 3069
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:25:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 1.4E-85 5E-90 714.3 2.4 393 213-622 3-409 (428)
2 3mae_A 2-oxoisovalerate dehydr 100.0 1.4E-56 4.7E-61 454.8 17.2 209 407-622 16-228 (256)
3 3l60_A Branched-chain alpha-ke 100.0 7.8E-56 2.7E-60 447.9 19.5 204 413-622 18-223 (250)
4 1dpb_A Dihydrolipoyl-transacet 100.0 1.9E-55 6.4E-60 444.8 21.6 210 408-622 14-226 (243)
5 1scz_A E2, dihydrolipoamide su 100.0 1.1E-55 3.7E-60 443.9 16.2 207 409-622 4-214 (233)
6 2ii3_A Lipoamide acyltransfera 100.0 9.7E-55 3.3E-59 443.4 20.0 210 408-622 30-242 (262)
7 3rqc_A Probable lipoamide acyl 100.0 4.7E-54 1.6E-58 429.5 17.1 201 408-622 5-205 (224)
8 3b8k_A PDCE2;, dihydrolipoylly 100.0 4.3E-54 1.5E-58 434.2 11.8 210 408-622 11-222 (239)
9 2xt6_A 2-oxoglutarate decarbox 100.0 2.1E-42 7E-47 411.6 12.4 198 424-622 1-210 (1113)
10 1q23_A Chloramphenicol acetylt 100.0 4.2E-39 1.4E-43 320.4 19.3 180 418-622 18-203 (219)
11 3cla_A Type III chloramphenico 100.0 1.5E-38 5.2E-43 315.2 19.0 181 418-622 13-199 (213)
12 2i9d_A Chloramphenicol acetylt 100.0 1.4E-37 4.6E-42 308.8 17.3 181 418-622 15-207 (217)
13 1zy8_K Pyruvate dehydrogenase 99.9 4.6E-28 1.6E-32 241.6 4.0 157 213-369 4-169 (229)
14 1y8o_B Dihydrolipoyllysine-res 99.8 3.3E-19 1.1E-23 161.8 12.2 94 75-169 15-110 (128)
15 2dne_A Dihydrolipoyllysine-res 99.8 2.7E-19 9.3E-24 158.2 9.5 86 82-168 3-89 (108)
16 2dnc_A Pyruvate dehydrogenase 99.8 3E-18 1E-22 148.9 11.5 83 84-167 5-88 (98)
17 3crk_C Dihydrolipoyllysine-res 99.8 3.8E-18 1.3E-22 145.0 11.8 83 83-166 2-85 (87)
18 1k8m_A E2 component of branche 99.7 1.6E-17 5.4E-22 143.0 10.3 80 85-165 3-82 (93)
19 1ghj_A E2, E2, the dihydrolipo 99.7 9.3E-17 3.2E-21 133.7 8.7 76 87-163 2-77 (79)
20 1y8o_B Dihydrolipoyllysine-res 99.7 2.4E-16 8.1E-21 143.0 10.9 86 208-294 23-109 (128)
21 2dne_A Dihydrolipoyllysine-res 99.7 1.4E-16 4.7E-21 140.8 8.5 85 208-293 3-88 (108)
22 3dva_I Dihydrolipoyllysine-res 99.7 7.8E-18 2.7E-22 182.8 0.0 82 85-167 1-82 (428)
23 2dnc_A Pyruvate dehydrogenase 99.7 4.5E-16 1.6E-20 135.1 11.1 83 210-293 5-88 (98)
24 3crk_C Dihydrolipoyllysine-res 99.7 5.2E-16 1.8E-20 131.8 11.0 81 210-291 3-84 (87)
25 1zy8_K Pyruvate dehydrogenase 99.6 1.4E-17 4.9E-22 165.9 0.0 81 85-165 2-82 (229)
26 1qjo_A Dihydrolipoamide acetyl 99.6 7.4E-16 2.5E-20 128.4 9.1 76 86-164 2-77 (80)
27 2l5t_A Lipoamide acyltransfera 99.6 7.5E-16 2.5E-20 127.5 7.9 75 87-162 2-76 (77)
28 1pmr_A Dihydrolipoyl succinylt 99.6 2E-17 6.9E-22 138.2 -1.8 75 87-162 3-77 (80)
29 1k8m_A E2 component of branche 99.6 3.2E-15 1.1E-19 128.5 9.8 78 212-290 4-81 (93)
30 1iyu_A E2P, dihydrolipoamide a 99.6 7.2E-15 2.5E-19 122.2 9.3 75 87-165 2-76 (79)
31 1ghj_A E2, E2, the dihydrolipo 99.6 8.9E-15 3.1E-19 121.7 9.5 76 213-289 2-77 (79)
32 1gjx_A Pyruvate dehydrogenase; 99.5 2.5E-15 8.5E-20 125.6 4.1 76 86-163 2-77 (81)
33 1pmr_A Dihydrolipoyl succinylt 99.5 4.2E-15 1.4E-19 124.1 2.8 75 213-288 3-77 (80)
34 2l5t_A Lipoamide acyltransfera 99.5 7.3E-14 2.5E-18 115.5 8.8 75 213-288 2-76 (77)
35 1qjo_A Dihydrolipoamide acetyl 99.5 1.2E-13 4.1E-18 115.0 8.9 75 213-290 3-77 (80)
36 1iyu_A E2P, dihydrolipoamide a 99.4 4.4E-13 1.5E-17 111.4 9.7 74 213-290 2-75 (79)
37 2k7v_A Dihydrolipoyllysine-res 99.4 1.9E-14 6.3E-19 121.6 0.3 72 87-165 3-74 (85)
38 1gjx_A Pyruvate dehydrogenase; 99.4 2.4E-13 8.1E-18 113.5 6.0 75 213-289 3-77 (81)
39 2kcc_A Acetyl-COA carboxylase 99.3 1.8E-12 6.2E-17 109.1 6.5 66 99-166 12-77 (84)
40 1z6h_A Biotin/lipoyl attachmen 99.3 5.1E-12 1.7E-16 102.7 8.6 64 99-163 6-69 (72)
41 2k7v_A Dihydrolipoyllysine-res 99.3 1.7E-12 5.9E-17 109.4 5.8 71 214-291 4-74 (85)
42 2jku_A Propionyl-COA carboxyla 99.3 5.7E-13 2E-17 114.6 2.8 80 82-162 11-94 (94)
43 2dn8_A Acetyl-COA carboxylase 99.3 1.2E-11 4.2E-16 107.4 8.9 65 99-165 24-88 (100)
44 2d5d_A Methylmalonyl-COA decar 99.2 5.2E-11 1.8E-15 97.1 8.8 62 99-161 12-73 (74)
45 1bdo_A Acetyl-COA carboxylase; 99.2 3.2E-11 1.1E-15 100.2 7.2 57 105-162 24-80 (80)
46 1dcz_A Transcarboxylase 1.3S s 99.2 5.4E-11 1.9E-15 97.9 8.4 63 99-162 15-77 (77)
47 2kcc_A Acetyl-COA carboxylase 99.2 4.9E-11 1.7E-15 100.3 7.1 63 226-290 13-75 (84)
48 2ejm_A Methylcrotonoyl-COA car 99.1 8.5E-11 2.9E-15 101.9 8.5 67 99-166 21-87 (99)
49 1z6h_A Biotin/lipoyl attachmen 99.1 1.1E-10 3.9E-15 94.6 8.1 63 226-289 7-69 (72)
50 3va7_A KLLA0E08119P; carboxyla 99.1 3.1E-12 1.1E-16 154.5 -4.5 61 227-288 1176-1236(1236)
51 2eq9_C Pyruvate dehydrogenase 99.1 6.6E-11 2.3E-15 85.7 3.6 38 330-367 2-39 (41)
52 2dn8_A Acetyl-COA carboxylase 99.1 3.1E-10 1.1E-14 98.6 8.0 62 226-289 25-86 (100)
53 3rnm_E Lipoamide acyltransfera 99.0 6.9E-11 2.4E-15 91.7 3.1 42 328-369 7-48 (58)
54 1bdo_A Acetyl-COA carboxylase; 99.0 2.5E-10 8.4E-15 94.8 6.6 59 228-287 21-79 (80)
55 2eq8_C Pyruvate dehydrogenase 99.0 9E-11 3.1E-15 84.5 3.3 37 331-367 2-38 (40)
56 2jku_A Propionyl-COA carboxyla 99.0 8.2E-11 2.8E-15 101.1 3.3 73 214-287 17-93 (94)
57 2eq7_C 2-oxoglutarate dehydrog 99.0 7.5E-11 2.6E-15 84.9 2.3 37 331-367 2-38 (40)
58 3n6r_A Propionyl-COA carboxyla 99.0 3.5E-10 1.2E-14 129.8 8.6 62 100-162 620-681 (681)
59 2d5d_A Methylmalonyl-COA decar 99.0 1.2E-09 4.1E-14 88.9 8.3 61 226-287 13-73 (74)
60 1dcz_A Transcarboxylase 1.3S s 99.0 1.3E-09 4.3E-14 89.6 8.3 61 226-287 16-76 (77)
61 3va7_A KLLA0E08119P; carboxyla 99.0 6.8E-10 2.3E-14 134.3 8.7 61 100-161 1175-1235(1236)
62 1bal_A Dihydrolipoamide succin 99.0 2E-10 6.7E-15 87.2 2.4 40 328-367 9-48 (51)
63 2ejm_A Methylcrotonoyl-COA car 99.0 1.7E-09 6E-14 93.6 8.7 64 226-290 22-85 (99)
64 1w85_I Dihydrolipoyllysine-res 98.9 2.9E-10 1E-14 85.5 3.2 40 329-368 7-46 (49)
65 3u9t_A MCC alpha, methylcroton 98.9 1.1E-10 3.6E-15 134.0 0.0 63 100-163 610-672 (675)
66 3hbl_A Pyruvate carboxylase; T 98.9 1.1E-09 3.6E-14 132.2 8.3 63 100-163 1085-1147(1150)
67 3n6r_A Propionyl-COA carboxyla 98.8 3E-09 1E-13 122.1 8.3 60 227-287 621-680 (681)
68 1w4i_A Pyruvate dehydrogenase 98.8 1.4E-09 4.7E-14 85.8 3.3 41 329-369 5-45 (62)
69 2f60_K Pyruvate dehydrogenase 98.8 1.5E-09 5E-14 86.1 3.0 40 330-369 11-50 (64)
70 2coo_A Lipoamide acyltransfera 98.8 2.7E-09 9.4E-14 86.1 4.3 41 329-369 16-56 (70)
71 3hbl_A Pyruvate carboxylase; T 98.8 8.3E-09 2.8E-13 124.4 8.2 63 226-289 1085-1147(1150)
72 3u9t_A MCC alpha, methylcroton 98.7 1E-09 3.5E-14 125.9 0.0 63 226-289 610-672 (675)
73 2k32_A A; NMR {Campylobacter j 98.7 1.3E-08 4.6E-13 90.3 6.0 67 99-166 8-104 (116)
74 1zko_A Glycine cleavage system 98.6 3.8E-08 1.3E-12 89.8 7.3 70 89-165 39-116 (136)
75 3bg3_A Pyruvate carboxylase, m 98.6 6.7E-09 2.3E-13 118.9 2.0 61 100-161 657-717 (718)
76 2qf7_A Pyruvate carboxylase pr 98.6 2.3E-08 7.9E-13 120.8 4.7 62 100-162 1103-1164(1165)
77 2k32_A A; NMR {Campylobacter j 98.5 1.7E-07 5.9E-12 83.1 6.0 65 226-291 9-103 (116)
78 1zko_A Glycine cleavage system 98.4 2.7E-07 9.3E-12 84.2 7.2 61 228-289 46-114 (136)
79 3bg3_A Pyruvate carboxylase, m 98.4 5.8E-08 2E-12 111.2 3.3 61 226-287 657-717 (718)
80 2qf7_A Pyruvate carboxylase pr 98.4 1.7E-07 5.9E-12 113.2 5.6 62 226-288 1103-1164(1165)
81 1hpc_A H protein of the glycin 98.2 7.2E-07 2.5E-11 80.9 4.0 70 89-165 30-107 (131)
82 1onl_A Glycine cleavage system 98.2 2.1E-06 7.2E-11 77.6 7.0 71 89-165 30-107 (128)
83 3a7l_A H-protein, glycine clea 98.2 1.6E-06 5.5E-11 78.3 5.8 70 89-164 31-107 (128)
84 1hpc_A H protein of the glycin 98.0 4E-06 1.4E-10 76.0 4.4 49 227-275 36-85 (131)
85 3a7l_A H-protein, glycine clea 98.0 9.1E-06 3.1E-10 73.4 6.1 49 227-275 37-86 (128)
86 1onl_A Glycine cleavage system 97.9 1.2E-05 4.3E-10 72.5 6.0 61 227-288 36-104 (128)
87 3fpp_A Macrolide-specific effl 97.8 9.6E-05 3.3E-09 77.2 12.0 66 99-165 38-191 (341)
88 3lnn_A Membrane fusion protein 97.7 4.4E-05 1.5E-09 80.4 6.8 67 99-166 64-207 (359)
89 3ne5_B Cation efflux system pr 97.7 5.8E-05 2E-09 81.5 7.7 67 99-166 128-243 (413)
90 2f1m_A Acriflavine resistance 97.6 1.9E-05 6.4E-10 80.3 3.1 67 99-166 29-168 (277)
91 3klr_A Glycine cleavage system 97.6 8.4E-05 2.9E-09 66.6 6.1 50 101-150 32-82 (125)
92 3mxu_A Glycine cleavage system 97.4 0.00016 5.6E-09 65.9 6.1 50 101-150 54-104 (143)
93 3tzu_A GCVH, glycine cleavage 97.4 0.00018 6E-09 65.4 5.7 46 101-146 49-95 (137)
94 1vf7_A Multidrug resistance pr 97.3 8.1E-05 2.8E-09 79.0 3.1 66 99-165 50-174 (369)
95 3klr_A Glycine cleavage system 97.3 0.00038 1.3E-08 62.3 6.2 47 227-273 32-79 (125)
96 3ne5_B Cation efflux system pr 97.2 0.00038 1.3E-08 75.1 6.9 63 226-289 129-240 (413)
97 2f1m_A Acriflavine resistance 97.2 0.00015 5E-09 73.6 3.5 64 226-290 30-166 (277)
98 3lnn_A Membrane fusion protein 97.2 0.00037 1.3E-08 73.2 6.6 64 226-290 65-205 (359)
99 3fpp_A Macrolide-specific effl 97.1 0.00043 1.5E-08 72.2 6.3 64 226-290 39-190 (341)
100 3hgb_A Glycine cleavage system 97.1 0.00063 2.2E-08 62.8 6.1 45 101-145 59-104 (155)
101 3mxu_A Glycine cleavage system 97.1 0.00073 2.5E-08 61.7 6.2 46 227-272 54-100 (143)
102 3tzu_A GCVH, glycine cleavage 97.0 0.00076 2.6E-08 61.2 5.5 44 227-270 49-93 (137)
103 4dk0_A Putative MACA; alpha-ha 96.7 8.3E-05 2.8E-09 78.5 -3.4 64 99-163 39-190 (369)
104 1vf7_A Multidrug resistance pr 96.7 0.00066 2.3E-08 71.9 3.5 64 226-290 51-173 (369)
105 3hgb_A Glycine cleavage system 96.6 0.0028 9.7E-08 58.4 6.2 44 227-270 59-103 (155)
106 4dk0_A Putative MACA; alpha-ha 96.3 0.00068 2.3E-08 71.4 0.4 62 226-288 40-189 (369)
107 2xhc_A Transcription antitermi 95.7 0.016 5.6E-07 60.8 7.6 32 105-142 62-93 (352)
108 3na6_A Succinylglutamate desuc 95.7 0.02 6.8E-07 59.7 8.2 60 102-164 266-329 (331)
109 2xha_A NUSG, transcription ant 95.6 0.057 2E-06 51.5 10.0 31 105-141 22-52 (193)
110 3cdx_A Succinylglutamatedesucc 95.5 0.032 1.1E-06 58.7 8.9 59 103-164 277-339 (354)
111 3na6_A Succinylglutamate desuc 94.8 0.051 1.7E-06 56.6 7.7 60 227-289 265-328 (331)
112 3fmc_A Putative succinylglutam 94.7 0.054 1.9E-06 57.3 7.8 59 102-163 299-363 (368)
113 3cdx_A Succinylglutamatedesucc 94.4 0.089 3.1E-06 55.3 8.6 60 228-290 276-339 (354)
114 3fmc_A Putative succinylglutam 94.1 0.093 3.2E-06 55.5 7.9 60 227-289 298-363 (368)
115 1f3z_A EIIA-GLC, glucose-speci 93.1 0.077 2.6E-06 49.4 4.5 59 99-162 19-116 (161)
116 2gpr_A Glucose-permease IIA co 91.9 0.12 4E-06 47.9 4.0 59 99-162 14-111 (154)
117 3lu0_D DNA-directed RNA polyme 91.8 0.28 9.6E-06 58.9 8.0 36 105-142 1002-1037(1407)
118 2qj8_A MLR6093 protein; struct 91.3 0.46 1.6E-05 49.2 8.3 60 101-163 265-328 (332)
119 1ax3_A Iiaglc, glucose permeas 91.0 0.11 3.8E-06 48.4 2.9 59 99-162 19-116 (162)
120 1f3z_A EIIA-GLC, glucose-speci 89.7 0.39 1.3E-05 44.6 5.3 58 226-288 20-116 (161)
121 2xha_A NUSG, transcription ant 88.6 0.4 1.4E-05 45.7 4.7 31 231-267 22-52 (193)
122 2qj8_A MLR6093 protein; struct 88.5 1 3.5E-05 46.6 8.2 60 227-289 265-328 (332)
123 2gpr_A Glucose-permease IIA co 88.0 0.53 1.8E-05 43.4 5.0 58 226-288 15-111 (154)
124 3d4r_A Domain of unknown funct 87.2 0.7 2.4E-05 42.7 5.2 47 100-146 108-155 (169)
125 1ax3_A Iiaglc, glucose permeas 85.2 0.6 2.1E-05 43.4 3.8 58 226-288 20-116 (162)
126 3d4r_A Domain of unknown funct 84.9 1.3 4.5E-05 40.9 5.8 45 226-270 108-153 (169)
127 2auk_A DNA-directed RNA polyme 84.2 0.95 3.3E-05 43.2 4.8 44 105-150 63-106 (190)
128 2xhc_A Transcription antitermi 81.7 1.3 4.4E-05 46.3 5.0 32 230-267 61-92 (352)
129 2auk_A DNA-directed RNA polyme 79.3 2 6.7E-05 41.0 5.0 44 231-276 63-106 (190)
130 3our_B EIIA, phosphotransferas 62.6 2.6 8.9E-05 39.7 1.5 27 101-127 115-141 (183)
131 3our_B EIIA, phosphotransferas 61.7 12 0.0004 35.3 5.8 20 268-288 119-138 (183)
132 3lu0_D DNA-directed RNA polyme 56.9 8.1 0.00028 46.7 4.6 42 231-274 1002-1043(1407)
133 2bco_A Succinylglutamate desuc 53.3 11 0.00038 39.1 4.6 49 107-163 280-328 (350)
134 1qpo_A Quinolinate acid phosph 51.6 9.5 0.00033 38.5 3.6 23 104-126 73-95 (284)
135 1o4u_A Type II quinolic acid p 49.6 8.5 0.00029 38.9 2.8 23 104-126 73-95 (285)
136 3l0g_A Nicotinate-nucleotide p 49.2 9.6 0.00033 38.7 3.2 25 101-126 84-108 (300)
137 1x1o_A Nicotinate-nucleotide p 49.2 9 0.00031 38.7 3.0 23 104-126 74-96 (286)
138 3tqv_A Nicotinate-nucleotide p 49.1 9.1 0.00031 38.7 3.0 25 101-126 75-99 (287)
139 2bco_A Succinylglutamate desuc 48.5 14 0.00047 38.4 4.4 50 232-289 279-328 (350)
140 2b7n_A Probable nicotinate-nuc 47.2 12 0.00042 37.4 3.6 25 101-126 58-82 (273)
141 3gnn_A Nicotinate-nucleotide p 46.5 11 0.00036 38.4 3.0 23 104-126 88-110 (298)
142 3paj_A Nicotinate-nucleotide p 45.5 11 0.00038 38.7 3.0 23 104-126 110-132 (320)
143 1qap_A Quinolinic acid phospho 43.8 12 0.00042 37.9 3.0 23 104-126 87-109 (296)
144 2dsj_A Pyrimidine-nucleoside ( 40.7 16 0.00053 39.1 3.3 24 104-127 370-393 (423)
145 1brw_A PYNP, protein (pyrimidi 39.9 16 0.00055 39.1 3.3 24 104-127 378-401 (433)
146 2jbm_A Nicotinate-nucleotide p 38.8 14 0.00049 37.4 2.6 25 101-126 71-95 (299)
147 3h5q_A PYNP, pyrimidine-nucleo 37.4 16 0.00055 39.1 2.8 23 104-126 381-403 (436)
148 1uou_A Thymidine phosphorylase 37.2 19 0.00066 38.9 3.4 23 104-126 413-435 (474)
149 1uou_A Thymidine phosphorylase 36.2 38 0.0013 36.7 5.5 43 123-166 366-437 (474)
150 1qpo_A Quinolinate acid phosph 34.7 22 0.00074 35.9 3.1 25 228-252 71-95 (284)
151 3tqv_A Nicotinate-nucleotide p 33.8 21 0.00071 36.1 2.8 23 230-252 77-99 (287)
152 1x1o_A Nicotinate-nucleotide p 33.6 21 0.00072 36.0 2.8 24 229-252 73-96 (286)
153 3l0g_A Nicotinate-nucleotide p 33.3 22 0.00077 36.0 2.9 24 229-252 85-108 (300)
154 1o4u_A Type II quinolic acid p 33.3 20 0.00068 36.2 2.6 24 229-252 72-95 (285)
155 2dsj_A Pyrimidine-nucleoside ( 32.0 31 0.0011 36.7 4.0 27 227-253 367-393 (423)
156 1brw_A PYNP, protein (pyrimidi 31.8 31 0.0011 36.9 3.9 24 229-252 377-400 (433)
157 3gnn_A Nicotinate-nucleotide p 31.0 24 0.00084 35.7 2.8 24 229-252 87-110 (298)
158 3it5_A Protease LASA; metallop 30.9 19 0.00064 33.8 1.8 19 144-163 86-104 (182)
159 2tpt_A Thymidine phosphorylase 30.8 16 0.00056 39.1 1.6 23 104-126 383-405 (440)
160 2b7n_A Probable nicotinate-nuc 30.7 28 0.00095 34.8 3.1 23 229-251 59-81 (273)
161 3paj_A Nicotinate-nucleotide p 29.5 27 0.00092 35.8 2.8 25 228-252 108-132 (320)
162 1qap_A Quinolinic acid phospho 28.6 29 0.00099 35.2 2.8 25 228-252 85-109 (296)
163 2tpt_A Thymidine phosphorylase 27.7 32 0.0011 36.8 3.1 27 227-253 380-406 (440)
164 3c2e_A Nicotinate-nucleotide p 27.6 26 0.00087 35.5 2.3 25 101-126 67-97 (294)
165 3h5q_A PYNP, pyrimidine-nucleo 26.1 41 0.0014 36.0 3.6 20 96-115 193-212 (436)
166 3it5_A Protease LASA; metallop 25.8 29 0.001 32.5 2.1 24 228-251 81-104 (182)
167 3tuf_B Stage II sporulation pr 25.4 29 0.001 34.2 2.1 17 145-162 137-153 (245)
168 2jbm_A Nicotinate-nucleotide p 25.2 32 0.0011 34.9 2.4 23 229-251 72-94 (299)
169 1qwy_A Peptidoglycan hydrolase 23.8 34 0.0012 34.6 2.3 22 143-165 239-260 (291)
170 2hsi_A Putative peptidase M23; 23.8 33 0.0011 34.5 2.2 21 143-164 232-252 (282)
171 3qoq_A Alginate and motility r 22.5 1.3E+02 0.0046 23.4 5.0 43 430-477 17-59 (69)
172 2lmc_B DNA-directed RNA polyme 21.9 20 0.00067 29.4 0.1 17 232-248 67-83 (84)
173 3vr4_A V-type sodium ATPase ca 20.5 1.3E+02 0.0044 33.4 6.2 53 108-164 131-186 (600)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=1.4e-85 Score=714.33 Aligned_cols=393 Identities=28% Similarity=0.437 Sum_probs=38.9
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.++.||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|++|.++++
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAPGY 81 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence 4689999999999999999999999999999999999999999999999999999999999998 999999999976554
Q ss_pred CcCCcCC-CCCCC---cccC-CCCCCC--CCCcc--ccc--cccCCCccCChhHHhHHHHcCCCcccccccCCCCeeech
Q 006995 293 DVGTVKN-SVTSG---AEVK-GEKETH--HDSKD--VVK--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKG 361 (622)
Q Consensus 293 ~~~~~~~-~~~~~---~~~~-~~~~~~--~~~~~--~~~--~~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~ 361 (622)
+...... ..... +... .+.+.+ ...+. ... .......++||+||+||+|+||||++|+||||+|||+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~ 161 (428)
T 3dva_I 82 ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKE 161 (428)
T ss_dssp ----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTT
T ss_pred cccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHH
Confidence 4322110 00000 0000 000000 00000 000 011223579999999999999999999999999999999
Q ss_pred hhHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecCchHhHHHHHHhhhccCCcceEEEEeee
Q 006995 362 DVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDV 441 (622)
Q Consensus 362 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~ev 441 (622)
||++|+....... ++.+ +.+ ....+ + .+. .......++++|+++|||.||++|.+||+++||||++.+|
T Consensus 162 DV~~~~~~~~~~~-~~~~----~~~--~~~~~-~-~~~--~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~ev 230 (428)
T 3dva_I 162 DIDAFLAGGAKPA-PAAA----EEK--AAPAA-A-KPA--TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEA 230 (428)
T ss_dssp TTTTTSCC------------------------------------------------------------------------
T ss_pred HHHHHhhcccccc-cccc----ccc--cccCC-C-Ccc--ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEE
Confidence 9999875321110 0000 000 00000 0 000 0011123678999999999999999999999999999999
Q ss_pred echHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccC
Q 006995 442 VLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNA 518 (622)
Q Consensus 442 dvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a 518 (622)
|+|+|+++|+++|. +.|.|+||++||+||+++||++||+||++|+++.++|++|++|||||||++++||++|+|+|+
T Consensus 231 Dvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a 310 (428)
T 3dva_I 231 DVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHA 310 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccC
Confidence 99999999999873 468899999999999999999999999999874445999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCCceEEEEeccceeEEEEeeCCCCCcCc
Q 006995 519 DQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETP 598 (622)
Q Consensus 519 ~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~ 598 (622)
++++|.+|++++++|++++|+|+|+++|++||||||||+||||+++|+||||+||+|||++|++.++|++.+| ++
T Consensus 311 ~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g-----~i 385 (428)
T 3dva_I 311 DRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-----EI 385 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECC-----EE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988554 79
Q ss_pred eEEcEEEEEEEeecccccCccCCC
Q 006995 599 AVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 599 ~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
++|++|+|||+||||||||+++|+
T Consensus 386 ~~r~~m~lsls~DHRviDG~~aa~ 409 (428)
T 3dva_I 386 VAAPMLALSLSFDHRMIDGATAQK 409 (428)
T ss_dssp ------------------------
T ss_pred EEeeeEEEEEEecccccchHHHHH
Confidence 999999999999999999999985
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-56 Score=454.84 Aligned_cols=209 Identities=37% Similarity=0.548 Sum_probs=199.8
Q ss_pred CCceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccc
Q 006995 407 DSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEAN 482 (622)
Q Consensus 407 ~~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN 482 (622)
...+++|+++|||+||++|.+||+++||||++.+||+|+|+++|+++|+ +.|.|+||++||+||+++||++||+||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 3578899999999999999999999999999999999999999999874 358899999999999999999999999
Q ss_pred eeecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCc
Q 006995 483 AYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPV 562 (622)
Q Consensus 483 ~~~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~ 562 (622)
++|+++ +|+++++||||+||++++||++|||+|++++||.+|++++++|++++|+|+|+++|++||||||||+|+||+
T Consensus 96 a~~~~~--~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~ 173 (256)
T 3mae_A 96 STWAGD--KIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS 173 (256)
T ss_dssp EEEETT--EEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred hEEecC--EEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence 999875 499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 563 DQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 563 ~~~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
++|+|||||||+|||++|++.++|++.+| +++++++|+|||+||||||||+++|+
T Consensus 174 ~~ftpIInppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~ 228 (256)
T 3mae_A 174 VQSMGIINHPQAAILQVESIVKRPVIIDD-----MIAVRDMVNLCLSIDHRILDGLLAGK 228 (256)
T ss_dssp SEEECCCCTTSSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred cceEcccCCCCceEEEecccEEEEEEECC-----EEEEeEEEEEEEEEccccccHHHHHH
Confidence 99999999999999999999999988654 89999999999999999999999874
No 3
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=7.8e-56 Score=447.85 Aligned_cols=204 Identities=28% Similarity=0.441 Sum_probs=195.7
Q ss_pred cCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCC--CC
Q 006995 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE--KG 490 (622)
Q Consensus 413 p~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~--~~ 490 (622)
|+++|||+||++|++||+++||||++.+||+|+|+++|+++|+ .|.|+||++||+||+++||++||+||++|+++ .+
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~ 96 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGP 96 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSC
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCC
Confidence 9999999999999999999999999999999999999999964 57899999999999999999999999999864 24
Q ss_pred eEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecC
Q 006995 491 EIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIIN 570 (622)
Q Consensus 491 ~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~ 570 (622)
+|++|+++|||+||++++||++|||+|++++||.+|++++++|++++|+|+|+++|++||||||||+|+||+++|+||||
T Consensus 97 ~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIin 176 (250)
T 3l60_A 97 QVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVIN 176 (250)
T ss_dssp EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCC
T ss_pred eEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 571 PPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 571 ~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|||+|||++|++.++|++.+| +++++++|+|||+||||||||+++|+
T Consensus 177 ppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~ 223 (250)
T 3l60_A 177 HPEAAILGLGAIKPRPVVVGG-----EVVARPTMTLTCVFDHRVVDGAQVAQ 223 (250)
T ss_dssp TTCSEEEEECCCEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred CCCceEEEecceEEEeEEECC-----EEEEEEEeEEEEEecccccCHHHHHH
Confidence 999999999999999988755 79999999999999999999999874
No 4
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=1.9e-55 Score=444.80 Aligned_cols=210 Identities=32% Similarity=0.426 Sum_probs=199.6
Q ss_pred CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (622)
Q Consensus 408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~Al~~~P~lN~~ 484 (622)
.++++|+++|||.||++|.+||+++||||++.++|+|+|+++|+++|+ +.|.|+||++|++||+++||++||+||++
T Consensus 14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 467789999999999999999999999999999999999999999874 46889999999999999999999999999
Q ss_pred ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (622)
Q Consensus 485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~ 564 (622)
|+++.++|++|++||||+||++++||++|||++++++||.+|++++++|++++|+|+|+++|++||||||||+||||+++
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 173 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA 173 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence 98653469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|+|||||||+|||++|++.++|++.+| +++++++|+|||+||||||||+++|+
T Consensus 174 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~~~~m~lsls~DHRviDGa~aa~ 226 (243)
T 1dpb_A 174 FTPIVNAPEVAILGVSKASMQPVWDGK-----AFQPRLMLPLSLSYDCRVINGAAAAR 226 (243)
T ss_dssp CCCCCCTTSSEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEEETTTSCHHHHHH
T ss_pred eECccCCCCCeEEEccccEEEEEEECC-----eEEEEEEEEEEEEECcccccHHHHHH
Confidence 999999999999999999999988644 79999999999999999999999874
No 5
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=1.1e-55 Score=443.87 Aligned_cols=207 Identities=37% Similarity=0.569 Sum_probs=197.7
Q ss_pred ceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (622)
Q Consensus 409 ~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~ 484 (622)
.+++|+++|||.||++|.+||+++||||++.++|+|+|+++|+++|+ +.|.|+||++|++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 45689999999999999999999999999999999999999999874 35789999999999999999999999999
Q ss_pred ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (622)
Q Consensus 485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~ 564 (622)
|+++ +|++|+++|||+||++++||++|||++++++||.+|++++++|++++|+|+|+++|++||||||||+||||+++
T Consensus 84 ~~~~--~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~ 161 (233)
T 1scz_A 84 IDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM 161 (233)
T ss_dssp EETT--EEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred EeCC--EEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence 9965 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|+|||||||+|||++|++.++|++.+| +++++++|+|||+||||||||+++|+
T Consensus 162 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~ 214 (233)
T 1scz_A 162 STPIINPPQSAILGMHAIKDRPMAVNG-----QVEILPMMYLALSYDHRLIDGRESVG 214 (233)
T ss_dssp CCCCCCTTCSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred eEcccCCCCcEEEEccccEEEEEEECC-----EEEEEEEEEEEEEEcceeechHHHHH
Confidence 999999999999999999999988654 79999999999999999999999874
No 6
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=9.7e-55 Score=443.39 Aligned_cols=210 Identities=29% Similarity=0.410 Sum_probs=198.4
Q ss_pred CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHHhhcccccee
Q 006995 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY 484 (622)
Q Consensus 408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~---~~g~k~t~~~~iikAva~Al~~~P~lN~~ 484 (622)
.++++|+++|||.||++|.+|+ ++||||++.+||+|+|+++|+++|+ +.|.|+||++||+||+++||++||+||++
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~ 108 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNAS 108 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence 4678999999999999999996 7999999999999999999999874 46889999999999999999999999999
Q ss_pred ecCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccc
Q 006995 485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564 (622)
Q Consensus 485 ~~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~ 564 (622)
|+++.++|++|+++|||+||++++||++|||+|++++||.+|++++++|++++|+|+|+++|++||||||||+||||+++
T Consensus 109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~ 188 (262)
T 2ii3_A 109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTY 188 (262)
T ss_dssp ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSC
T ss_pred EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccc
Confidence 98764579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 565 ~tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|+|||||||+|||++|++.++|++.. || +++++.+|+|||+||||||||+++|+
T Consensus 189 ~tPIinppq~aIL~vG~~~~~pv~~~--~g--~i~~r~~m~lsls~DHRviDGa~aa~ 242 (262)
T 2ii3_A 189 AKPVILPPEVAIGALGTIKALPRFNE--KG--EVCKAQIMNVSWSADHRIIDGATVSR 242 (262)
T ss_dssp EECCCCTTCCEEEEECCCEEEEEECT--TS--CEEEEEEEEEEEEEETTTCCHHHHHH
T ss_pred eECccCCCcceEEEcCccEEEEEEec--CC--cEEEEeeeEEEEEECcceecHHHHHH
Confidence 99999999999999999999988752 23 79999999999999999999999874
No 7
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=4.7e-54 Score=429.52 Aligned_cols=201 Identities=32% Similarity=0.435 Sum_probs=190.8
Q ss_pred CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecC
Q 006995 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487 (622)
Q Consensus 408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~ 487 (622)
..+++|++++||+||++|.+||+++||||++.++|+|+|+++|+++|++ |.|+||++|++||+++||++||+||++|++
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-g~kls~~~~~ikA~~~Al~~~P~~N~~~~~ 83 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-NRKVTVTGFLARIVPSILKQYPYLNAIYDE 83 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-TCCCCHHHHHHHHHHHHHHHSGGGSBBCCS
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHhCHHhheEEeC
Confidence 3567899999999999999999999999999999999999999999755 889999999999999999999999999988
Q ss_pred CCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceee
Q 006995 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCA 567 (622)
Q Consensus 488 ~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tp 567 (622)
+.++|++|+++|||+||++++||++|||+|++++|+.+|++++++|++++|+|+|+++|++||||||||+|+||+++|+|
T Consensus 84 ~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tp 163 (224)
T 3rqc_A 84 TRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTP 163 (224)
T ss_dssp STTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEEC
T ss_pred CCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEe
Confidence 74569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 568 IINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 568 ii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
||||||+|||++|++.++|+ +++|+|||+||||||||+++|+
T Consensus 164 iin~pq~aIl~vG~~~~~p~-------------r~~m~lsls~DHRviDGa~aa~ 205 (224)
T 3rqc_A 164 IINYPEVAILGVHRILEREG-------------RKYMYLSLSCDHRLIDGAVATR 205 (224)
T ss_dssp CCCTTBSEEEEECCCEEETT-------------EEECCEEEEEETTTSCHHHHHH
T ss_pred ccCCCCceEEEecccEEECC-------------ceEEEEEEEeccceecHHHHHH
Confidence 99999999999999987532 6899999999999999999874
No 8
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=4.3e-54 Score=434.24 Aligned_cols=210 Identities=51% Similarity=0.776 Sum_probs=197.2
Q ss_pred CceeecCchHhHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhh--CCCCccHHHHHHHHHHHHHhhccccceee
Q 006995 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK--HNTKVSVNDIVIKAVAVALKNVPEANAYW 485 (622)
Q Consensus 408 ~~~~vp~s~~rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~--~g~k~t~~~~iikAva~Al~~~P~lN~~~ 485 (622)
.++++|+++|||.||++|.+||+++||||++.++|+|+|+++|+++|+. .+.|+||++|++||+++||++||+||++|
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~ 90 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSW 90 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence 3678899999999999999999999999999999999999999998742 23599999999999999999999999999
Q ss_pred cCCCCeEEEcCCccEEEEEecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccce
Q 006995 486 DVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565 (622)
Q Consensus 486 ~~~~~~i~~~~~vnigiAV~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~ 565 (622)
+++. |++|+++|||+||++++||++|+|++++++||.+|++++++|++++|+|+|+++|++||||||||+||+|+++|
T Consensus 91 ~~~~--i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f 168 (239)
T 3b8k_A 91 MDTV--IRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF 168 (239)
T ss_dssp CCCS--SSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred ECCE--EEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence 9765 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 566 tpii~~pq~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
+|||||||+|||++|++.++|++. ..+| +++++.+|+|||+||||||||+++|+
T Consensus 169 tpiin~pq~aIl~vG~~~~~pv~~-~~~g--~i~~r~~m~lsls~DHRviDGa~aa~ 222 (239)
T 3b8k_A 169 SAIINPPQACILAIGASEDKLVPA-DNEK--GFDVASMMSVTLSCDHRVVDGAVGAQ 222 (239)
T ss_dssp CCCCCTTSCCCCEECCCCCSCCCC-CSSS--SCCCCCCEEEEECCCCCSSCHHHHHH
T ss_pred ECcCCCCceEEEECcccEEEEEEE-cCCC--cEEEEEEEEEEEEEcceeechHHHHH
Confidence 999999999999999999998774 1233 79999999999999999999999874
No 9
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.1e-42 Score=411.57 Aligned_cols=198 Identities=19% Similarity=0.279 Sum_probs=158.6
Q ss_pred HhhhccCCcceEEEEeeeechHHHHHHHHHhh----hCCCCccHHHHHHHHHHHHHhhccccceeecCCC--CeEEEcCC
Q 006995 424 RLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEK--GEIVLCDA 497 (622)
Q Consensus 424 ~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~----~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~--~~i~~~~~ 497 (622)
+|.+|+ ++||+|++.+||+|+|+++|+++|. +.|.|+||++||+||+++||++||+||++|+++. +.|+++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 588995 8999999999999999999999874 3688999999999999999999999999998642 26999999
Q ss_pred ccEEEEEecC--CC---eEEeeeccCCCCCHHHHHHHHHHHHHHHHcCCCCCCccCCCcEEEEeCCCCCccceeeecCCC
Q 006995 498 IDISIAVATE--KG---LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP 572 (622)
Q Consensus 498 vnigiAV~~~--~G---L~~pvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggtftISNlG~~G~~~~tpii~~p 572 (622)
|||||||+++ +| |++|||||++++||.+|++++++|++++|+|+|+++|++||||||||+|+||+++|+||||||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp 159 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence 9999999997 66 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccceeEEEEeeCCC-CCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 573 QAGILAVGRGNQVVEPVIGSD-GNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 573 q~ail~vG~~~~~~~~~~g~~-g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
|+|||++|++.++|++.++.+ +..+++++++|+||||||||||||+++|+
T Consensus 160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~ 210 (1113)
T 2xt6_A 160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGD 210 (1113)
T ss_dssp CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHH
T ss_pred CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHH
Confidence 999999999998876643110 00168999999999999999999999874
No 10
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=100.00 E-value=4.2e-39 Score=320.37 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=156.2
Q ss_pred hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCC
Q 006995 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA 497 (622)
Q Consensus 418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~ 497 (622)
||.--... . ..++||||++.++|+|+|+++|++. ++||++|++||+++||++||++|++|+++ +|++|++
T Consensus 18 R~~~f~~f-~-~~~~P~~t~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~ 87 (219)
T 1q23_A 18 RKEHFEAF-Q-SVAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWDS 87 (219)
T ss_dssp THHHHHHH-T-TTTCEEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESC
T ss_pred CHHHHHHh-c-CCCCcEEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEecc
Confidence 44444444 2 3799999999999999999999764 89999999999999999999999999965 4999999
Q ss_pred ccEEEEE-ecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcC-CCCC-CccCCCcEEEEeCCCCCccceeeecCCCc-
Q 006995 498 IDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPPQ- 573 (622)
Q Consensus 498 vnigiAV-~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~-~d~~ggtftISNlG~~G~~~~tpii~~pq- 573 (622)
||||+|| ++++||++||++. +.+++.+|++++++|++++|+| +|++ +|+ ||||||||+|++|.+.+.+.+++|.
T Consensus 88 v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~~ 165 (219)
T 1q23_A 88 VHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMDN 165 (219)
T ss_dssp CEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCTT
T ss_pred cCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCcc
Confidence 9999999 9999999999996 6789999999999999999998 6976 899 9999999999987555555444332
Q ss_pred --eEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 574 --AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 574 --~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
++||++|++.++ + | +.+|+|||+||||||||+++|+
T Consensus 166 ~~~pIi~~G~~~~~----~---~------r~~m~lsls~DHRvvDG~~aa~ 203 (219)
T 1q23_A 166 FFAPVFTMGKYYTQ----G---D------KVLMPLAIQVHHAVCDGFHVGR 203 (219)
T ss_dssp CCSCEEEECCCEEE----T---T------EEEEEEEEEEETTTCCHHHHHH
T ss_pred ceeEEEecccEEEE----C---C------cEEEEEEEEEEchhhChHHHHH
Confidence 599999999864 2 2 6899999999999999999874
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=100.00 E-value=1.5e-38 Score=315.24 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=157.0
Q ss_pred hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeecCCCCeEEEcCC
Q 006995 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA 497 (622)
Q Consensus 418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~~~~~~i~~~~~ 497 (622)
||.--..... .++||+|++.++|+|+|+++|++. ++|+++|++||+++||++||++|++|+++ +|++|++
T Consensus 13 R~~~f~~f~~--~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~ 82 (213)
T 3cla_A 13 RREHFEFYRH--RLPCGFSLTSKIDITTLKKSLDDS------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDS 82 (213)
T ss_dssp THHHHHHHHH--TSCCEEEEEEEEECHHHHHHHHTS------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESC
T ss_pred cHHHHHHHhC--CCCceEEEEEEEEHHHHHHHHHHh------CCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEec
Confidence 4444444443 589999999999999999999753 89999999999999999999999999965 4999999
Q ss_pred ccEEEEE-ecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHcC-CCCC-CccCCCcEEEEeCCCCCccceeeecCCC--
Q 006995 498 IDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPP-- 572 (622)
Q Consensus 498 vnigiAV-~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~g-~l~~-~d~~ggtftISNlG~~G~~~~tpii~~p-- 572 (622)
||||+|| ++++||++||+++ +.+++.+|++++++|++++|+| +|++ +|++||||||||+||++.+.|+...+.+
T Consensus 83 v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~ 161 (213)
T 3cla_A 83 VDPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTD 161 (213)
T ss_dssp CEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTT
T ss_pred cceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCc
Confidence 9999999 9999999999987 5789999999999999999996 9988 8999999999999998877665444433
Q ss_pred -ceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 573 -QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 573 -q~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
..+|+++|++.++ + | +.+|+|||+||||||||+++|+
T Consensus 162 ~~~PIi~~G~~~~~----~---~------~~~m~lsls~DHRvvDG~~aa~ 199 (213)
T 3cla_A 162 YFAPIITMAKYQQE----G---D------RLLLPLSVQVHHAVCDGFHVAR 199 (213)
T ss_dssp CCSCEEEEECCEEE----T---T------EEEEEEEEEEETTTCCHHHHHH
T ss_pred ccccEEEeeEEEEE----C---C------eEEEEEEEEEcccccChHHHHH
Confidence 2479999999864 2 2 6899999999999999999874
No 12
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-37 Score=308.78 Aligned_cols=181 Identities=17% Similarity=0.130 Sum_probs=157.2
Q ss_pred hHHHHHHhhhccCCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhhccccceeec-CCCCeEEEcC
Q 006995 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWD-VEKGEIVLCD 496 (622)
Q Consensus 418 rk~ia~~m~~S~~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~~P~lN~~~~-~~~~~i~~~~ 496 (622)
||.--..... .++||+|++.++|+|+|+++|++. ++|+++|++||+++||++||++|++|+ ++ +|++|+
T Consensus 15 R~~~f~~f~~--~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~--~i~~~~ 84 (217)
T 2i9d_A 15 RKENFNFFRH--FQNPQLSITSEVECGGARQRAKAA------GQSFFLHYLYAVLRAANEIPEFRYRIDPDG--RVVLYD 84 (217)
T ss_dssp THHHHHHHTT--CSBCEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHHHSGGGGEEECTTS--CEEEES
T ss_pred CHHHHHHHhC--CCCceEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhCHHhheEEcCCC--EEEEec
Confidence 4444444433 689999999999999999999864 899999999999999999999999998 54 499999
Q ss_pred CccEEEEE-ecCCCeEEeeeccCCCCCHHHHHHHHHHHHHHHHc-CCCCCC------ccCCCcEEEEeCCCCCccceeee
Q 006995 497 AIDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARA-GKLAPH------EFQGGTFSISNLGMFPVDQFCAI 568 (622)
Q Consensus 497 ~vnigiAV-~~~~GL~~pvI~~a~~~sl~eia~~~~~l~~~ar~-g~l~~~------d~~ggtftISNlG~~G~~~~tpi 568 (622)
++|||+|| ++++||++|++. +..+++.+|++++++|++++|+ |+|+++ |++||||||||+||++.+.|+..
T Consensus 85 ~i~igvAVf~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~ 163 (217)
T 2i9d_A 85 TIDMLSPIKIKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGT 163 (217)
T ss_dssp CCEEEEEEECSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCC
T ss_pred ccCeEEEEEecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecC
Confidence 99999999 999999999996 5678999999999999999999 599995 99999999999999887777555
Q ss_pred cCCC---ceEEEEeccceeEEEEeeCCCCCcCceEEcEEEEEEEeecccccCccCCC
Q 006995 569 INPP---QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGT 622 (622)
Q Consensus 569 i~~p---q~ail~vG~~~~~~~~~~g~~g~~~~~~~~~m~lslt~DHRvvDGa~aa~ 622 (622)
.+++ ..+||++|++.++ + | +.+|+|||+||||||||+++|+
T Consensus 164 ~~~g~~~~~PIi~~Gk~~~~----~---~------r~~m~lsls~DHRvvDG~~aa~ 207 (217)
T 2i9d_A 164 QEKRSGNNYPLLNAGKAIIR----E---G------RLVMPIAMTIHHGFIDGHHLSL 207 (217)
T ss_dssp BCSTTCCSSCEEEECCCEEE----T---T------EEEEEEEEEEETTTCCHHHHHH
T ss_pred CCCCccceEEEEecceEEEE----C---C------cEEEEEEEEecchhhChHHHHH
Confidence 5444 2579999999754 1 2 6899999999999999999874
No 13
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.94 E-value=4.6e-28 Score=241.57 Aligned_cols=157 Identities=36% Similarity=0.571 Sum_probs=38.3
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCCC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG 292 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~~ 292 (622)
.+|+||+||++|.+|+|++|+|++||.|++||+||+|||||++++|+|+++|+|.+|++++|+..|.+|++|++|.++++
T Consensus 4 ~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~~~ 83 (229)
T 1zy8_K 4 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGE 83 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEeccCc
Confidence 47899999999999999999999999999999999999999999999999999999999999933999999999975443
Q ss_pred CcCCc--CCC-CCCCcccCCCCC--CCCCCcccccc----ccCCCccCChhHHhHHHHcCCCcccccccCCCCeeechhh
Q 006995 293 DVGTV--KNS-VTSGAEVKGEKE--THHDSKDVVKV----QKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363 (622)
Q Consensus 293 ~~~~~--~~~-~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV 363 (622)
+.... +.. ....+......+ .+......+.. ......++||+||+||+|+||||++|+|||++|||+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V~GTGp~GRItk~DV 163 (229)
T 1zy8_K 84 DWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDA 163 (229)
T ss_dssp ----------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHHHH
T ss_pred cccccccccccccccccccCCCcccccccccCCCcccccccccccccCChHHHHHHHHcCCCccccCCCCCCCceehHHH
Confidence 22110 000 000000000000 00000000000 0112346899999999999999999999999999999999
Q ss_pred HHHHhc
Q 006995 364 LAAIKS 369 (622)
Q Consensus 364 ~~~~~~ 369 (622)
++|++.
T Consensus 164 ~~~~~~ 169 (229)
T 1zy8_K 164 LKLVQL 169 (229)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999864
No 14
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.79 E-value=3.3e-19 Score=161.82 Aligned_cols=94 Identities=54% Similarity=0.907 Sum_probs=82.1
Q ss_pred ccccc-cCCCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-ccc
Q 006995 75 VRHFS-SSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDV 152 (622)
Q Consensus 75 ~r~f~-~~~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~v 152 (622)
+|.|. .+.+++++.|+||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |
T Consensus 15 ~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V 93 (128)
T 1y8o_B 15 ENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-V 93 (128)
T ss_dssp --------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-E
T ss_pred ccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-e
Confidence 34444 3477889999999999999999999999999999999999999999999999999999999999999998 8 9
Q ss_pred cCCCeEEEEEcCCcccc
Q 006995 153 PVGQPIAITVEDADDIQ 169 (622)
Q Consensus 153 ~~G~~l~~i~~~~~~~~ 169 (622)
.+|++|+.|...++...
T Consensus 94 ~~G~~L~~i~~~~~~~~ 110 (128)
T 1y8o_B 94 PLGTPLCIIVEKEADIS 110 (128)
T ss_dssp ETTCEEEEEESSGGGGG
T ss_pred cCCCEEEEEecCccchh
Confidence 99999999987655433
No 15
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=158.18 Aligned_cols=86 Identities=59% Similarity=0.912 Sum_probs=80.9
Q ss_pred CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-ccccCCCeEEE
Q 006995 82 ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAI 160 (622)
Q Consensus 82 ~~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~v~~G~~l~~ 160 (622)
.++|++.|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|+.
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~ 81 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI 81 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence 35788999999999999999999999999999999999999999999999999999999999999999 8 999999999
Q ss_pred EEcCCccc
Q 006995 161 TVEDADDI 168 (622)
Q Consensus 161 i~~~~~~~ 168 (622)
|...+++.
T Consensus 82 i~~~~~~~ 89 (108)
T 2dne_A 82 TVGKPEDI 89 (108)
T ss_dssp EESCHHHH
T ss_pred EecCccch
Confidence 98765443
No 16
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=148.87 Aligned_cols=83 Identities=53% Similarity=0.866 Sum_probs=78.7
Q ss_pred CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccc-cCCCeEEEEE
Q 006995 84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDV-PVGQPIAITV 162 (622)
Q Consensus 84 ~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v-~~G~~l~~i~ 162 (622)
.+.+.|+||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|.
T Consensus 5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLIV 83 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEEE
T ss_pred cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEEe
Confidence 5678999999999999999999999999999999999999999999999999999999999999999 9 9999999998
Q ss_pred cCCcc
Q 006995 163 EDADD 167 (622)
Q Consensus 163 ~~~~~ 167 (622)
..+++
T Consensus 84 ~~~~~ 88 (98)
T 2dnc_A 84 EEGED 88 (98)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 65543
No 17
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.76 E-value=3.8e-18 Score=144.98 Aligned_cols=83 Identities=57% Similarity=0.969 Sum_probs=78.4
Q ss_pred CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC-ccccCCCeEEEE
Q 006995 83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAIT 161 (622)
Q Consensus 83 ~~~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~-~~v~~G~~l~~i 161 (622)
+++++.++||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |..|++|+.|
T Consensus 2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i 80 (87)
T 3crk_C 2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCII 80 (87)
T ss_dssp CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEE
T ss_pred CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEE
Confidence 3667899999999999999999999999999999999999999999999999999999999999999 8 9999999999
Q ss_pred EcCCc
Q 006995 162 VEDAD 166 (622)
Q Consensus 162 ~~~~~ 166 (622)
...++
T Consensus 81 ~~~~~ 85 (87)
T 3crk_C 81 VEKEA 85 (87)
T ss_dssp ESSST
T ss_pred EcccC
Confidence 76443
No 18
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.72 E-value=1.6e-17 Score=142.97 Aligned_cols=80 Identities=24% Similarity=0.418 Sum_probs=76.3
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
+.+.|+||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|...
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE 81 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence 458899999999999999999999999999999999999999999999999999999999999999 9999999999754
Q ss_pred C
Q 006995 165 A 165 (622)
Q Consensus 165 ~ 165 (622)
+
T Consensus 82 ~ 82 (93)
T 1k8m_A 82 A 82 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.67 E-value=9.3e-17 Score=133.73 Aligned_cols=76 Identities=28% Similarity=0.560 Sum_probs=73.7
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
+.++||++|+++.+|+|.+|+|++||.|++||+||++|++|+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999999 999999999854
No 20
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.66 E-value=2.4e-16 Score=142.98 Aligned_cols=86 Identities=52% Similarity=0.952 Sum_probs=79.4
Q ss_pred CCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEEE
Q 006995 208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI 286 (622)
Q Consensus 208 ~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~~ 286 (622)
..+...++.||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+ . |.+|++|+.
T Consensus 23 ~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V~~G~~L~~ 101 (128)
T 1y8o_B 23 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCI 101 (128)
T ss_dssp CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-EETTCEEEE
T ss_pred cCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-ecCCCEEEE
Confidence 34556889999999999999999999999999999999999999999999999999999999999998 8 999999999
Q ss_pred EecCCCCc
Q 006995 287 TVEDPGDV 294 (622)
Q Consensus 287 i~~~~~~~ 294 (622)
|...+++.
T Consensus 102 i~~~~~~~ 109 (128)
T 1y8o_B 102 IVEKEADI 109 (128)
T ss_dssp EESSGGGG
T ss_pred EecCccch
Confidence 98655443
No 21
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=140.79 Aligned_cols=85 Identities=54% Similarity=0.860 Sum_probs=79.1
Q ss_pred CCCCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEEE
Q 006995 208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI 286 (622)
Q Consensus 208 ~~~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~~ 286 (622)
..|...++.||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|+.
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~ 81 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI 81 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence 35567889999999999999999999999999999999999999999999999999999999999998 8 999999999
Q ss_pred EecCCCC
Q 006995 287 TVEDPGD 293 (622)
Q Consensus 287 i~~~~~~ 293 (622)
|...+++
T Consensus 82 i~~~~~~ 88 (108)
T 2dne_A 82 TVGKPED 88 (108)
T ss_dssp EESCHHH
T ss_pred EecCccc
Confidence 9765443
No 22
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.65 E-value=7.8e-18 Score=182.76 Aligned_cols=82 Identities=34% Similarity=0.579 Sum_probs=0.0
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |.+|++|+.|+++
T Consensus 1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~ 79 (428)
T 3dva_I 1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP 79 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence 346899999999999999999999999999999999999999999999999999999999999999 9999999999876
Q ss_pred Ccc
Q 006995 165 ADD 167 (622)
Q Consensus 165 ~~~ 167 (622)
+++
T Consensus 80 ~~~ 82 (428)
T 3dva_I 80 GYE 82 (428)
T ss_dssp ---
T ss_pred Ccc
Confidence 554
No 23
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=135.12 Aligned_cols=83 Identities=47% Similarity=0.825 Sum_probs=77.7
Q ss_pred CCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeec-ccCCeEEEEe
Q 006995 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDV-AVGQPIAITV 288 (622)
Q Consensus 210 ~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v-~vG~~l~~i~ 288 (622)
+...++.||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|.
T Consensus 5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLIV 83 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEEE
T ss_pred cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEEe
Confidence 3557899999999999999999999999999999999999999999999999999999999999999 9 9999999997
Q ss_pred cCCCC
Q 006995 289 EDPGD 293 (622)
Q Consensus 289 ~~~~~ 293 (622)
..+++
T Consensus 84 ~~~~~ 88 (98)
T 2dnc_A 84 EEGED 88 (98)
T ss_dssp CTTSC
T ss_pred cCCCc
Confidence 65443
No 24
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.65 E-value=5.2e-16 Score=131.76 Aligned_cols=81 Identities=53% Similarity=0.959 Sum_probs=76.5
Q ss_pred CCceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC-eecccCCeEEEEe
Q 006995 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAITV 288 (622)
Q Consensus 210 ~~~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~-~~v~vG~~l~~i~ 288 (622)
|...++.||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ . |..|++|+.+.
T Consensus 3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i~ 81 (87)
T 3crk_C 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCIIV 81 (87)
T ss_dssp CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEEE
T ss_pred CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999 8 99999999997
Q ss_pred cCC
Q 006995 289 EDP 291 (622)
Q Consensus 289 ~~~ 291 (622)
..+
T Consensus 82 ~~~ 84 (87)
T 3crk_C 82 EKE 84 (87)
T ss_dssp SSS
T ss_pred ccc
Confidence 543
No 25
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.64 E-value=1.4e-17 Score=165.85 Aligned_cols=81 Identities=52% Similarity=0.880 Sum_probs=0.0
Q ss_pred cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 85 ~~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
|.++|+||+||++|++|+|++|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+..|.+|++|++|..+
T Consensus 2 ~~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 2 DPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999339999999999754
Q ss_pred C
Q 006995 165 A 165 (622)
Q Consensus 165 ~ 165 (622)
+
T Consensus 82 ~ 82 (229)
T 1zy8_K 82 G 82 (229)
T ss_dssp -
T ss_pred C
Confidence 4
No 26
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.63 E-value=7.4e-16 Score=128.44 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=72.9
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
.+.|+||++|++ +|+|.+|++++||.|++||+||+||++|+..+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus 2 ~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE 77 (80)
T ss_dssp EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred CeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence 468999999998 899999999999999999999999999999999999999999999999999 9999999999754
No 27
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.62 E-value=7.5e-16 Score=127.54 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=73.0
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
++++||++|+++.+|+|.+|++++||.|++||+||++|++|+..+|.||++|+|.++++++|+. |..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999999 99999999985
No 28
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.61 E-value=2e-17 Score=138.18 Aligned_cols=75 Identities=31% Similarity=0.514 Sum_probs=72.9
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
+.++||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|.
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~ 77 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLR 77 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence 5689999999999999999999999999999999999999999999999999999999999999 99999999885
No 29
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.59 E-value=3.2e-15 Score=128.53 Aligned_cols=78 Identities=22% Similarity=0.430 Sum_probs=74.5
Q ss_pred ceeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 212 ~~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
..++.||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|.||++|+|.++++++|+. |..|++|+.|...
T Consensus 4 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE 81 (93)
T ss_dssp CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred ceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence 36789999999999999999999999999999999999999999999999999999999999999 9999999999643
No 30
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.57 E-value=7.2e-15 Score=122.24 Aligned_cols=75 Identities=25% Similarity=0.362 Sum_probs=71.1
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
+.++||++|++ + +|.+|+|++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecCC
Confidence 56899999996 7 9999999999999999999999999999999999999999999999999 99999999997543
No 31
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.56 E-value=8.9e-15 Score=121.66 Aligned_cols=76 Identities=28% Similarity=0.579 Sum_probs=73.1
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.++.||++++++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence 4689999999999999999999999999999999999999999999999999999999999999 999999999854
No 32
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.54 E-value=2.5e-15 Score=125.60 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=72.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 86 ~~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
.+.++||++| ++..|+|.+|++++||.|++||+||+||++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence 4679999999 688999999999999999999999999999999999999999999999999999 999999999864
No 33
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.50 E-value=4.2e-15 Score=124.06 Aligned_cols=75 Identities=32% Similarity=0.526 Sum_probs=72.2
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
.++.||++|+++..|+|.+|++++||.|++||+|++||+||+..+|.||++|+|.++++++|+. |..|++|+.+.
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~ 77 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLR 77 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence 3688999999999999999999999999999999999999999999999999999999999999 99999999875
No 34
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.48 E-value=7.3e-14 Score=115.46 Aligned_cols=75 Identities=29% Similarity=0.509 Sum_probs=72.3
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
.++.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence 3688999999999999999999999999999999999999999999999999999999999999 99999999874
No 35
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.47 E-value=1.2e-13 Score=114.98 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=71.5
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.++.||+++.+ .|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|...
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE 77 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence 46889999998 999999999999999999999999999999999999999999999999999 9999999999754
No 36
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.43 E-value=4.4e-13 Score=111.36 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=69.8
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.++.||++|.+ + +|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|...
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA 75 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence 36889999996 6 9999999999999999999999999999999999999999999999999 9999999998643
No 37
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.41 E-value=1.9e-14 Score=121.56 Aligned_cols=72 Identities=28% Similarity=0.368 Sum_probs=67.9
Q ss_pred eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 87 ~~~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
+.|++|.+ |+|.+|++++||+|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|...+
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG 74 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence 46788988 88999999999999999999999999999999999999999999999999 99999999997543
No 38
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.40 E-value=2.4e-13 Score=113.49 Aligned_cols=75 Identities=28% Similarity=0.416 Sum_probs=71.4
Q ss_pred eeeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 213 ~~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.++.||+++ ++..|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.+..
T Consensus 3 ~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~ 77 (81)
T 1gjx_A 3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA 77 (81)
T ss_dssp EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred EEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence 578899999 688999999999999999999999999999999999999999999999999999 999999999854
No 39
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.31 E-value=1.8e-12 Score=109.11 Aligned_cols=66 Identities=23% Similarity=0.326 Sum_probs=62.1
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
..|+|.+|++++||.|++||+||+||++|+.++|+||++|+|.+++ ++|+. |..|++|+.|.....
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~~~ 77 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELDDL 77 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECSCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCCCh
Confidence 5689999999999999999999999999999999999999999999 99999 999999999975443
No 40
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.31 E-value=5.1e-12 Score=102.70 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=61.5
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
..|+|.+|++++||.|++||+|++||++|...+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence 4699999999999999999999999999999999999999999999999999 999999999854
No 41
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.30 E-value=1.7e-12 Score=109.38 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=66.5
Q ss_pred eeecCCCCCCcccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecCC
Q 006995 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP 291 (622)
Q Consensus 214 ~~~~P~l~~~~~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~~ 291 (622)
++.+|.+ |+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|...+
T Consensus 4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG 74 (85)
T ss_dssp CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence 5677877 89999999999999999999999999999999999999999999999999 99999999997543
No 42
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.30 E-value=5.7e-13 Score=114.63 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCCcceEEecCCCCCCC----ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCe
Q 006995 82 ELPSHTVVGMPALSPTM----SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQP 157 (622)
Q Consensus 82 ~~~~~~~~~~p~~g~~~----~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~ 157 (622)
...+...|.+|...+.. ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++
T Consensus 11 ~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~ 89 (94)
T 2jku_A 11 VDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDL 89 (94)
T ss_dssp -------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--------------------------------
T ss_pred ccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCE
Confidence 34556779999988764 5899999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEEE
Q 006995 158 IAITV 162 (622)
Q Consensus 158 l~~i~ 162 (622)
|+.|+
T Consensus 90 L~~ie 94 (94)
T 2jku_A 90 LVELE 94 (94)
T ss_dssp -----
T ss_pred EEEEC
Confidence 99873
No 43
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=107.43 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=61.6
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCC
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|. +++++|+. |..|++|+.|...+
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLELDD 88 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECCSC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEcCC
Confidence 4699999999999999999999999999999999999999999 99999999 99999999996543
No 44
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.19 E-value=5.2e-11 Score=97.06 Aligned_cols=62 Identities=31% Similarity=0.482 Sum_probs=60.0
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
..|+|.+|++++||.|++||+|++++++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i 73 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL 73 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence 4699999999999999999999999999999999999999999999999999 9999999987
No 45
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.18 E-value=3.2e-11 Score=100.24 Aligned_cols=57 Identities=30% Similarity=0.482 Sum_probs=54.9
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++|+.|+
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i~ 80 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVIE 80 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEEC
T ss_pred ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEEC
Confidence 4799999999999999999999999999999999999999999999 99999999873
No 46
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.18 E-value=5.4e-11 Score=97.90 Aligned_cols=63 Identities=29% Similarity=0.379 Sum_probs=60.3
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
..|+|.+|++++||.|++||+|++|+++|+..+|.||++|+|.++++++|+. |..|++|+.|+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEEC
Confidence 4589999999999999999999999999999999999999999999999999 99999999873
No 47
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.15 E-value=4.9e-11 Score=100.28 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=60.2
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.|+|.+|++++||.|++||+|++||++|+.++|.||.+|+|.+++ ++|+. |..|++|+.|...
T Consensus 13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~ 75 (84)
T 2kcc_A 13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELD 75 (84)
T ss_dssp SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECS
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCC
Confidence 589999999999999999999999999999999999999999999 99999 9999999999643
No 48
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.14 E-value=8.5e-11 Score=101.93 Aligned_cols=67 Identities=27% Similarity=0.361 Sum_probs=63.1
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.+++++.|+. |..|++|+.|...+.
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCCc
Confidence 4699999999999999999999999999999999999999999999999999 999999999975443
No 49
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.13 E-value=1.1e-10 Score=94.59 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=60.6
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.|+|.+|++++||.|++||+|+++|++|...+|.||.+|+|.++++++|+. |..|++|+.|..
T Consensus 7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~ 69 (72)
T 1z6h_A 7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN 69 (72)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999 999999999854
No 50
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.08 E-value=3.1e-12 Score=154.51 Aligned_cols=61 Identities=31% Similarity=0.407 Sum_probs=59.4
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.+|++++|+. |.+|++|++|.
T Consensus 1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~ 1236 (1236)
T 3va7_A 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVIV 1236 (1236)
T ss_dssp EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEeC
Confidence 89999999999999999999999999999999999999999999999999 99999999873
No 51
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.06 E-value=6.6e-11 Score=85.66 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=36.3
Q ss_pred cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367 (622)
Q Consensus 330 ~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~ 367 (622)
.+||+||++|+|+|||++.|+|||++|||+++||++|+
T Consensus 2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 39 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHH
T ss_pred CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHh
Confidence 47999999999999999999999999999999999886
No 52
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3.1e-10 Score=98.56 Aligned_cols=62 Identities=19% Similarity=0.369 Sum_probs=59.7
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|. +++++|+. |..|++|+.|..
T Consensus 25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~ 86 (100)
T 2dn8_A 25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLEL 86 (100)
T ss_dssp CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECC
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEc
Confidence 589999999999999999999999999999999999999999 99999999 999999999864
No 53
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.04 E-value=6.9e-11 Score=91.72 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=38.8
Q ss_pred CccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (622)
Q Consensus 328 ~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~ 369 (622)
.+.+||+||+||+|+|||++.|+|||++|||+++||++|++.
T Consensus 7 ~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp -CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 356899999999999999999999999999999999999864
No 54
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.04 E-value=2.5e-10 Score=94.81 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=56.0
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.+.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus 21 ~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i 79 (80)
T 1bdo_A 21 PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI 79 (80)
T ss_dssp TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEE
Confidence 4456899999999999999999999999999999999999999999999 9999999987
No 55
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.04 E-value=9e-11 Score=84.49 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=35.7
Q ss_pred CChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367 (622)
Q Consensus 331 asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~ 367 (622)
+||+||++|+++|||++.|+|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6899999999999999999999999999999999885
No 56
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.03 E-value=8.2e-11 Score=101.06 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=27.6
Q ss_pred eeecCCCCCCc----ccceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 214 VLEMPALSPTM----NQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 214 ~~~~P~l~~~~----~eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.+.+|...... ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++.+++|+. |..|++|+.|
T Consensus 17 ~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i 93 (94)
T 2jku_A 17 NLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDLLVEL 93 (94)
T ss_dssp -------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred EEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCEEEEE
Confidence 44555555443 3699999999999999999999999999999999999999999999999999 9999999876
No 57
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.02 E-value=7.5e-11 Score=84.90 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=34.8
Q ss_pred CChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367 (622)
Q Consensus 331 asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~ 367 (622)
+||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 6899999999999999999999999999999999875
No 58
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.01 E-value=3.5e-10 Score=129.82 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=60.2
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
-|+|++|+|++||+|++||+||+||+||+.++|+||.+|+|+++++++||. |.+|++|+.|+
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEEC
Confidence 499999999999999999999999999999999999999999999999999 99999999883
No 59
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.98 E-value=1.2e-09 Score=88.88 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=59.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|.+|++++||.|++||+|++++++|...+|.||.+|+|.++.+++|+. |..|++|+.+
T Consensus 13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i 73 (74)
T 2d5d_A 13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL 73 (74)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence 589999999999999999999999999999999999999999999999999 9999999886
No 60
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.98 E-value=1.3e-09 Score=89.64 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=59.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|.|.+|++++||.|++||+|++++++|+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i 76 (77)
T 1dcz_A 16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI 76 (77)
T ss_dssp SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEE
Confidence 579999999999999999999999999999999999999999999999999 9999999987
No 61
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.96 E-value=6.8e-10 Score=134.31 Aligned_cols=61 Identities=30% Similarity=0.350 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
-|+|.+|+|++||+|++||+||+||+||++++|+||++|+|.++++++||. |.+|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEe
Confidence 399999999999999999999999999999999999999999999999999 9999999987
No 62
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=98.95 E-value=2e-10 Score=87.19 Aligned_cols=40 Identities=35% Similarity=0.542 Sum_probs=37.1
Q ss_pred CccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHH
Q 006995 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367 (622)
Q Consensus 328 ~~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~ 367 (622)
...+||++|+||+++|||++.|.|||++|||+++||++|+
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence 3468999999999999999999999999999999999875
No 63
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.95 E-value=1.7e-09 Score=93.62 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=61.3
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
.|+|.+|++++||.|++||+|++|+++|+..+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus 22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~ 85 (99)
T 2ejm_A 22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEE 85 (99)
T ss_dssp SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCC
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECC
Confidence 589999999999999999999999999999999999999999999999999 9999999999654
No 64
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=98.95 E-value=2.9e-10 Score=85.52 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=37.7
Q ss_pred ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHh
Q 006995 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368 (622)
Q Consensus 329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~ 368 (622)
..+||++|+||+++|||++.|.|||++|||+++||++|+.
T Consensus 7 ~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 7 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred ccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 4579999999999999999999999999999999999874
No 65
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.93 E-value=1.1e-10 Score=134.02 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=0.0
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
.|+|++|+|++||+|++||+||+||+||++++|+||++|+|+++++++||. |.+|++|+.|+.
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~~ 672 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGEL-VEEGTPLVELDE 672 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCC-cCCCCEEEEEec
Confidence 589999999999999999999999999999999999999999999999999 999999999964
No 66
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.92 E-value=1.1e-09 Score=132.17 Aligned_cols=63 Identities=14% Similarity=0.282 Sum_probs=60.7
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
.|+|++|+|++||+|++||+||+||+||+.++|+||++|+|.++++++||. |.+|++|+.|+.
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEK 1147 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC-
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEec
Confidence 599999999999999999999999999999999999999999999999999 999999999964
No 67
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.85 E-value=3e-09 Score=122.11 Aligned_cols=60 Identities=30% Similarity=0.405 Sum_probs=59.0
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i 680 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEF 680 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEE
Confidence 79999999999999999999999999999999999999999999999999 9999999987
No 68
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.83 E-value=1.4e-09 Score=85.83 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=38.2
Q ss_pred ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (622)
Q Consensus 329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~ 369 (622)
..+||++|+||+++||||+.|.|||++|||+++||++|+..
T Consensus 5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~ 45 (62)
T 1w4i_A 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE 45 (62)
T ss_dssp SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 35799999999999999999999999999999999999863
No 69
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.82 E-value=1.5e-09 Score=86.13 Aligned_cols=40 Identities=38% Similarity=0.610 Sum_probs=37.8
Q ss_pred cCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (622)
Q Consensus 330 ~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~ 369 (622)
.+||+||++|+++|||++.|.|||++|||+++||++|+..
T Consensus 11 ~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 11 RLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 4799999999999999999999999999999999999763
No 70
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.81 E-value=2.7e-09 Score=86.09 Aligned_cols=41 Identities=29% Similarity=0.499 Sum_probs=38.4
Q ss_pred ccCChhHHhHHHHcCCCcccccccCCCCeeechhhHHHHhc
Q 006995 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369 (622)
Q Consensus 329 ~~asP~aR~lA~e~giDls~v~gtGp~GrI~k~DV~~~~~~ 369 (622)
..++|+||+||+++||||+.|.|||++|||+++||++|+..
T Consensus 16 ~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 16 TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp CCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred cccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 45899999999999999999999999999999999999764
No 71
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.75 E-value=8.3e-09 Score=124.41 Aligned_cols=63 Identities=13% Similarity=0.266 Sum_probs=60.3
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|..
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEK 1147 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC-
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEec
Confidence 379999999999999999999999999999999999999999999999999 999999999954
No 72
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.75 E-value=1e-09 Score=125.89 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=0.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|.+
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~~ 672 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGEL-VEEGTPLVELDE 672 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCC-cCCCCEEEEEec
Confidence 379999999999999999999999999999999999999999999999999 999999999854
No 73
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.70 E-value=1.3e-08 Score=90.33 Aligned_cols=67 Identities=27% Similarity=0.313 Sum_probs=61.1
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecceee-----------------------------EEecCCcEEEEEEEecCCC
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATV-----------------------------EFESLEEGFLAKILVPEGS 149 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~-----------------------------~i~s~~~G~i~~~~~~~g~ 149 (622)
..|+|.+|+|++||.|++||+|++|++.++.. .|.||++|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 46999999999999999999999999986653 8999999999999999999
Q ss_pred ccccCC-CeEEEEEcCCc
Q 006995 150 KDVPVG-QPIAITVEDAD 166 (622)
Q Consensus 150 ~~v~~G-~~l~~i~~~~~ 166 (622)
. |..| ++|+.|.+.+.
T Consensus 88 ~-v~~g~~~l~~i~~~~~ 104 (116)
T 2k32_A 88 Y-VSASTTELVRVTNLNP 104 (116)
T ss_dssp E-ECTTTSCCEEEECSCT
T ss_pred E-EcCCCcEEEEEECCCe
Confidence 9 9999 99999976554
No 74
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.65 E-value=3.8e-08 Score=89.84 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=58.7
Q ss_pred EecCCCCCCCceEEEEEEE-ecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEE---EecCCCcccc---CCC-eEEE
Q 006995 89 VGMPALSPTMSQGNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAI 160 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~---~~~~g~~~v~---~G~-~l~~ 160 (622)
+..|.+|+ |.... +++||+|++||+||.||+||+..+|.||++|+|.++ +++.|+. |. .|+ .|+.
T Consensus 39 ~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~ 111 (136)
T 1zko_A 39 HAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFK 111 (136)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEE
T ss_pred hhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEE
Confidence 34555655 33333 499999999999999999999999999999999999 8889999 98 888 9999
Q ss_pred EEcCC
Q 006995 161 TVEDA 165 (622)
Q Consensus 161 i~~~~ 165 (622)
|....
T Consensus 112 i~~~~ 116 (136)
T 1zko_A 112 MEISD 116 (136)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 97443
No 75
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.62 E-value=6.7e-09 Score=118.89 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=59.6
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT 161 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i 161 (622)
.|+|++|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence 699999999999999999999999999999999999999999999999999 9999999876
No 76
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.57 E-value=2.3e-08 Score=120.81 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=53.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEE
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~ 162 (622)
.|+|.+|+|++||.|++||+||+||+||+..+|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence 599999999999999999999999999999999999999999999999999 99999999874
No 77
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.45 E-value=1.7e-07 Score=83.08 Aligned_cols=65 Identities=23% Similarity=0.298 Sum_probs=59.5
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccccee-----------------------------eEecCCCeeEEEEeccCCCe
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-----------------------------EFECLEEGYLAKILAPEGSK 276 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-----------------------------~i~s~~~G~v~~i~~~~g~~ 276 (622)
.|.|.+|++++||.|++||+|+++++.++.. .|.||++|+|.++.+.+|+.
T Consensus 9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~ 88 (116)
T 2k32_A 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY 88 (116)
T ss_dssp CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence 5899999999999999999999999986653 89999999999999999999
Q ss_pred ecccC-CeEEEEecCC
Q 006995 277 DVAVG-QPIAITVEDP 291 (622)
Q Consensus 277 ~v~vG-~~l~~i~~~~ 291 (622)
|..| ++|+.|.+..
T Consensus 89 -v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 89 -VSASTTELVRVTNLN 103 (116)
T ss_dssp -ECTTTSCCEEEECSC
T ss_pred -EcCCCcEEEEEECCC
Confidence 9999 9999997643
No 78
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.45 E-value=2.7e-07 Score=84.17 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=53.8
Q ss_pred eeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEE---eccCCCeecc---cCC-eEEEEec
Q 006995 228 NIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI---LAPEGSKDVA---VGQ-PIAITVE 289 (622)
Q Consensus 228 ~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i---~~~~g~~~v~---vG~-~l~~i~~ 289 (622)
.|+.+.+ ++||.|++||+||.||+||+.++|.||.+|+|.++ ++++|+. |. .|+ .|+.|..
T Consensus 46 ~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 46 DVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFKMEI 114 (136)
T ss_dssp SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEEEEE
T ss_pred CcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEEEEE
Confidence 3544444 99999999999999999999999999999999999 8889998 98 887 8888863
No 79
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.44 E-value=5.8e-08 Score=111.16 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=59.0
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEE
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT 287 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i 287 (622)
.|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i 717 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI 717 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence 589999999999999999999999999999999999999999999999999 9999999875
No 80
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.38 E-value=1.7e-07 Score=113.22 Aligned_cols=62 Identities=23% Similarity=0.397 Sum_probs=53.3
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEe
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~ 288 (622)
.|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence 489999999999999999999999999999999999999999999999999 99999998873
No 81
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.20 E-value=7.2e-07 Score=80.93 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=53.7
Q ss_pred EecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCC---cccc---CCC-eEEE
Q 006995 89 VGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS---KDVP---VGQ-PIAI 160 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~---~~v~---~G~-~l~~ 160 (622)
+.+|.+|+ |+...+ ++||+|++||+||+||+||+..+|.||.+|+|.+++.+.++ . |. -|+ -|+.
T Consensus 30 ~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~ 102 (131)
T 1hpc_A 30 HAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGL-INSSPYEDGWMIK 102 (131)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTH-HHHCTTTTTCCEE
T ss_pred hhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhh-hccCCCCCceEEE
Confidence 34455554 444444 99999999999999999999999999999999999865544 4 43 455 7888
Q ss_pred EEcCC
Q 006995 161 TVEDA 165 (622)
Q Consensus 161 i~~~~ 165 (622)
|....
T Consensus 103 i~~~~ 107 (131)
T 1hpc_A 103 IKPTS 107 (131)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 86433
No 82
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.20 E-value=2.1e-06 Score=77.56 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=54.6
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec---CCCccc---cCCC-eEEEE
Q 006995 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP---EGSKDV---PVGQ-PIAIT 161 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~---~g~~~v---~~G~-~l~~i 161 (622)
+..|.+|+ |...++ .++||+|++||+||+||++|+..+|.||.+|+|.+++.. ..+. | +-|+ -|+.|
T Consensus 30 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i 103 (128)
T 1onl_A 30 YAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRL 103 (128)
T ss_dssp HHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEE
T ss_pred HHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEE
Confidence 34455655 343333 499999999999999999999999999999999999754 4444 5 5566 78888
Q ss_pred EcCC
Q 006995 162 VEDA 165 (622)
Q Consensus 162 ~~~~ 165 (622)
....
T Consensus 104 ~~~~ 107 (128)
T 1onl_A 104 KPRD 107 (128)
T ss_dssp EESC
T ss_pred EECC
Confidence 6443
No 83
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.18 E-value=1.6e-06 Score=78.33 Aligned_cols=70 Identities=16% Similarity=0.045 Sum_probs=53.2
Q ss_pred EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecC---CCcccc---CCC-eEEEE
Q 006995 89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE---GSKDVP---VGQ-PIAIT 161 (622)
Q Consensus 89 ~~~p~~g~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~---g~~~v~---~G~-~l~~i 161 (622)
+.+|.+|+ |...++ +++||+|++||+||+||++|+..+|.||.+|+|.+++... .+. |. -|+ -|+.|
T Consensus 31 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~l-vn~dpy~~gWl~~i 104 (128)
T 3a7l_A 31 HAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPEL-VNSEPYAGGWIFKI 104 (128)
T ss_dssp HHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTH-HHHCTTTTTCCEEE
T ss_pred HHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHH-hccCCCCCccEEEE
Confidence 44555655 343333 4999999999999999999999999999999999997644 444 44 455 77777
Q ss_pred EcC
Q 006995 162 VED 164 (622)
Q Consensus 162 ~~~ 164 (622)
...
T Consensus 105 ~~~ 107 (128)
T 3a7l_A 105 KAS 107 (128)
T ss_dssp EES
T ss_pred EEC
Confidence 643
No 84
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.99 E-value=4e-06 Score=76.03 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=43.0
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~ 275 (622)
|.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+.++
T Consensus 36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~ 85 (131)
T 1hpc_A 36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTG 85 (131)
T ss_dssp CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHH
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhc
Confidence 45666666 99999999999999999999999999999999999755444
No 85
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=97.95 E-value=9.1e-06 Score=73.38 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=42.0
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCC
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~ 275 (622)
|.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+.++
T Consensus 37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~ 86 (128)
T 3a7l_A 37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSD 86 (128)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhcc
Confidence 44555544 89999999999999999999999999999999999764443
No 86
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=97.90 E-value=1.2e-05 Score=72.47 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=48.1
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEecc---CCCeec---ccCC-eEEEEe
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP---EGSKDV---AVGQ-PIAITV 288 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~---~g~~~v---~vG~-~l~~i~ 288 (622)
|.|+.+.+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+ ..+. | +-|+ -|+.|.
T Consensus 36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~ 104 (128)
T 1onl_A 36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRLK 104 (128)
T ss_dssp CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEE
T ss_pred CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEEE
Confidence 34555544 99999999999999999999999999999999999754 3333 4 4454 666664
No 87
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.81 E-value=9.6e-05 Score=77.21 Aligned_cols=66 Identities=20% Similarity=0.269 Sum_probs=57.4
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.+++|++||.|++||+|++|++...
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 459999999999999999999999987421
Q ss_pred -----------------------------------eeEEecCCcEEEEEEEecCCCccccCCCe---EEEEEcCC
Q 006995 129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVEDA 165 (622)
Q Consensus 129 -----------------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~---l~~i~~~~ 165 (622)
...|.||++|+|.++.+..|+. |..|++ |+.|.+..
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS 191 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecCC
Confidence 1459999999999999999999 999988 88886544
No 88
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.67 E-value=4.4e-05 Score=80.38 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=59.3
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.+++|++||.|++||+|++|++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999997532
Q ss_pred --------------------------eeEEecCCcEEEEEEEecCCCccccC-CCeEEEEEcCCc
Q 006995 129 --------------------------TVEFESLEEGFLAKILVPEGSKDVPV-GQPIAITVEDAD 166 (622)
Q Consensus 129 --------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~-G~~l~~i~~~~~ 166 (622)
...|.||++|+|.++.+..|+. |.. |++|+.|.+.+.
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~~~ 207 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADLSH 207 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECCSE
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecCCe
Confidence 2579999999999999999999 999 999999976543
No 89
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.67 E-value=5.8e-05 Score=81.50 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=59.0
Q ss_pred ceEEEEEEEe-cCCCeeecCCeEEEEEec------------------------------------------------cee
Q 006995 99 SQGNIAKWRK-KEGDKIEIGDILCEIETD------------------------------------------------KAT 129 (622)
Q Consensus 99 ~eg~i~~w~v-~~Gd~V~~g~~l~~vetd------------------------------------------------K~~ 129 (622)
..|.|.+++| ++||.|++||+|++|++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999952 124
Q ss_pred eEEecCCcEEEEEEEecCCCccccCCCeEEEEEcCCc
Q 006995 130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 130 ~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
..|.||++|+|.++.+++|+. |..|++|+.|.+.+.
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~~~~ 243 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDP 243 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCE-ECTTSCSEEEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeCCCe
Confidence 689999999999999999999 999999999975443
No 90
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.63 E-value=1.9e-05 Score=80.26 Aligned_cols=67 Identities=31% Similarity=0.319 Sum_probs=58.2
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecc---------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDK--------------------------------------------------- 127 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK--------------------------------------------------- 127 (622)
..|.|.+|+|++||.|++||+|++|++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998742
Q ss_pred --------------------eeeEEecCCcEEEEEEEecCCCccccCC--CeEEEEEcCCc
Q 006995 128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD 166 (622)
Q Consensus 128 --------------------~~~~i~s~~~G~i~~~~~~~g~~~v~~G--~~l~~i~~~~~ 166 (622)
....|.||++|+|.++.+..|+. |..| ++|+.|.+.+.
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~~~ 168 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP 168 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecCCc
Confidence 12479999999999999999999 9999 58999976443
No 91
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.58 E-value=8.4e-05 Score=66.56 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=43.1
Q ss_pred EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995 101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (622)
Q Consensus 101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~ 150 (622)
|.|+.... ++|++|++||++|.||++|+..+|.||.+|+|.++.....+.
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~ 82 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAEN 82 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTC
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhC
Confidence 56766655 789999999999999999999999999999999997665443
No 92
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.43 E-value=0.00016 Score=65.93 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=42.1
Q ss_pred EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995 101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (622)
Q Consensus 101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~ 150 (622)
|.|+-... ++|++|++||++|.||++|+..+|.||.+|+|.++.-...+.
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~ 104 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAES 104 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhC
Confidence 55655444 789999999999999999999999999999999887655443
No 93
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.39 E-value=0.00018 Score=65.41 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=39.7
Q ss_pred EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEec
Q 006995 101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146 (622)
Q Consensus 101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~ 146 (622)
|.|+.... ++|++|++||++|.||++|+..+|.||.+|+|.++.-.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~ 95 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA 95 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence 55655444 78999999999999999999999999999999888543
No 94
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.32 E-value=8.1e-05 Score=78.99 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=57.7
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.+++|++||.|++||+|++|++...
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999986421
Q ss_pred -------eeEEecCCcEEEEEEEecCCCccccCC--CeEEEEEcCC
Q 006995 129 -------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDA 165 (622)
Q Consensus 129 -------~~~i~s~~~G~i~~~~~~~g~~~v~~G--~~l~~i~~~~ 165 (622)
...|.||++|+|.++.++.|+. |..| ++|+.|.+.+
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECCS
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecCC
Confidence 2579999999999999999999 9995 8999997544
No 95
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.26 E-value=0.00038 Score=62.32 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=41.1
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccC
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPE 273 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~ 273 (622)
|.|+-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.+++..-
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l 79 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKAL 79 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhh
Confidence 56766655 789999999999999999999999999999999996443
No 96
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.21 E-value=0.00038 Score=75.09 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=56.3
Q ss_pred cceeeEeee-CCCCeeecCCeeEEEecc------------------------------------------------ccee
Q 006995 226 QGNIAKWRK-NEGDKIEVGDVICEIETD------------------------------------------------KATL 256 (622)
Q Consensus 226 eg~i~~w~v-~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~ 256 (622)
.|.|.+++| ++||.|++||+|++|++. ....
T Consensus 129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~ 208 (413)
T 3ne5_B 129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF 208 (413)
T ss_dssp CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence 589999998 999999999999999952 1235
Q ss_pred eEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 257 ~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
.|.||++|+|.++.+.+|+. |..|++|+.|.+
T Consensus 209 ~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~ 240 (413)
T 3ne5_B 209 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQG 240 (413)
T ss_dssp EEECSSSEEEEECCCCTTCE-ECTTSCSEEEEE
T ss_pred EEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeC
Confidence 79999999999999999999 999999999974
No 97
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.21 E-value=0.00015 Score=73.57 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=56.2
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccc----------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDK---------------------------------------------------- 253 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK---------------------------------------------------- 253 (622)
.|.|.+++|++||.|++||+|+++++..
T Consensus 30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~ 109 (277)
T 2f1m_A 30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 109 (277)
T ss_dssp CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 4899999999999999999999998742
Q ss_pred -------------------ceeeEecCCCeeEEEEeccCCCeecccC--CeEEEEecC
Q 006995 254 -------------------ATLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED 290 (622)
Q Consensus 254 -------------------~~~~i~s~~~G~v~~i~~~~g~~~v~vG--~~l~~i~~~ 290 (622)
....|.||++|+|..+.+..|+. |..| ++|+.|.+.
T Consensus 110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecC
Confidence 02379999999999999999999 9999 589988754
No 98
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.20 E-value=0.00037 Score=73.24 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=57.1
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.++++++||.|++||+|++++....
T Consensus 65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~ 144 (359)
T 3lnn_A 65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE 144 (359)
T ss_dssp CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999997532
Q ss_pred -------------------------eeeEecCCCeeEEEEeccCCCeeccc-CCeEEEEecC
Q 006995 255 -------------------------TLEFECLEEGYLAKILAPEGSKDVAV-GQPIAITVED 290 (622)
Q Consensus 255 -------------------------~~~i~s~~~G~v~~i~~~~g~~~v~v-G~~l~~i~~~ 290 (622)
...|.||++|+|..+.+..|+. |.. |++|+.|.+.
T Consensus 145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECC
T ss_pred HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecC
Confidence 2469999999999999999999 999 9999998753
No 99
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.14 E-value=0.00043 Score=72.20 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=55.7
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.+++|++||.|++||+|++++....
T Consensus 39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 118 (341)
T 3fpp_A 39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN 118 (341)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 48999999999999999999999987520
Q ss_pred ----------------------------------eeeEecCCCeeEEEEeccCCCeecccCCe---EEEEecC
Q 006995 255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITVED 290 (622)
Q Consensus 255 ----------------------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~---l~~i~~~ 290 (622)
...|.||++|+|..+.+..|+. |..|++ |+.|.+.
T Consensus 119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM 190 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecC
Confidence 1359999999999999999999 999987 8888643
No 100
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.09 E-value=0.00063 Score=62.80 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=38.8
Q ss_pred EEEEEEEe-cCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEe
Q 006995 101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV 145 (622)
Q Consensus 101 g~i~~w~v-~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~ 145 (622)
|.|+-... ++|+.|++||+++.||+.|+..+|.||.+|+|.++.-
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 45554433 7899999999999999999999999999999988754
No 101
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.07 E-value=0.00073 Score=61.67 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=40.0
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEecc
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~ 272 (622)
|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++-.
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 55665544 78999999999999999999999999999999998643
No 102
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.99 E-value=0.00076 Score=61.24 Aligned_cols=44 Identities=16% Similarity=0.344 Sum_probs=39.2
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 56665544 789999999999999999999999999999999985
No 103
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.75 E-value=8.3e-05 Score=78.54 Aligned_cols=64 Identities=28% Similarity=0.406 Sum_probs=54.8
Q ss_pred ceEEEEEEEecCCCeeecCCeEEEEEecce--------------------------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA-------------------------------------------------- 128 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~-------------------------------------------------- 128 (622)
..|.|.+++|++||.|++||+|++|++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 358999999999999999999999987521
Q ss_pred -----------------------------------eeEEecCCcEEEEEEEecCCCccccCCCe---EEEEEc
Q 006995 129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVE 163 (622)
Q Consensus 129 -----------------------------------~~~i~s~~~G~i~~~~~~~g~~~v~~G~~---l~~i~~ 163 (622)
...|.||++|+|.++.++.|+. |..|++ |+.|.+
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVAD 190 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEcC
Confidence 1349999999999999999999 999998 666643
No 104
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.74 E-value=0.00066 Score=71.91 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=55.9
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.++++++||.|++||+|++|+....
T Consensus 51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~ 130 (369)
T 1vf7_A 51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ 130 (369)
T ss_dssp CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999986421
Q ss_pred ------eeeEecCCCeeEEEEeccCCCeecccC--CeEEEEecC
Q 006995 255 ------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED 290 (622)
Q Consensus 255 ------~~~i~s~~~G~v~~i~~~~g~~~v~vG--~~l~~i~~~ 290 (622)
...|.||++|+|..+.+..|+. |..| ++|+.|...
T Consensus 131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 131 ARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECC
T ss_pred HHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecC
Confidence 2479999999999999999999 9995 899988643
No 105
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.60 E-value=0.0028 Score=58.45 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=38.5
Q ss_pred ceeeEeee-CCCCeeecCCeeEEEecccceeeEecCCCeeEEEEe
Q 006995 227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL 270 (622)
Q Consensus 227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~ 270 (622)
|.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.+++
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 55555433 789999999999999999999999999999999985
No 106
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.34 E-value=0.00068 Score=71.44 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=53.4
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEecccc---------------------------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKA--------------------------------------------------- 254 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~--------------------------------------------------- 254 (622)
.|.|.+++|++||.|++||+|++++....
T Consensus 40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 119 (369)
T 4dk0_A 40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT 119 (369)
T ss_dssp CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 48999999999999999999999987521
Q ss_pred ----------------------------------eeeEecCCCeeEEEEeccCCCeecccCCe---EEEEe
Q 006995 255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITV 288 (622)
Q Consensus 255 ----------------------------------~~~i~s~~~G~v~~i~~~~g~~~v~vG~~---l~~i~ 288 (622)
...|.||++|+|..+.+..|+. |..|++ |+.|.
T Consensus 120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEc
Confidence 1249999999999999999999 999998 55554
No 107
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.75 E-value=0.016 Score=60.76 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=27.3
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEE
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~ 142 (622)
..+|++||.|++||.||+-. .|-+.++|+|.+
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~ 93 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 93 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence 67999999999999999974 788888888753
No 108
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=95.74 E-value=0.02 Score=59.74 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=50.4
Q ss_pred EEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 102 NIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 102 ~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
=+.+.+++.||.|++||+|++|.. .....+|.||++|+|...... -. |..|+.|+.|...
T Consensus 266 Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~--~~-V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 266 GLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFP--GM-IKSGDCAAVIGVV 329 (331)
T ss_dssp EEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECS--SE-ECTTCEEEEEECB
T ss_pred eEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCC--Cc-cCCCCEEEEEecc
Confidence 377889999999999999999986 356789999999999776553 45 8899999998643
No 109
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.61 E-value=0.057 Score=51.52 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=27.9
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEE
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLA 141 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~ 141 (622)
..+|++|+.|++||.||+-. .|-+.++|+|.
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 46899999999999999875 89999999993
No 110
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=95.52 E-value=0.032 Score=58.71 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=51.6
Q ss_pred EEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 103 IAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 103 i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
+++..++.||.|++||+|+.|+. .+...+|.||.+|+|..+. .... |..|+.|+.|...
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMED 339 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeee
Confidence 77888999999999999999997 4888999999999998664 5667 8999999999643
No 111
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=94.81 E-value=0.051 Score=56.64 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=50.1
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEecc----cceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETD----KATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetd----K~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
+-+...+++.||.|++||+|++|... ....+|.||.+|+|..... ... |..|+.|+.|..
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~ 328 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGV 328 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEEC
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEec
Confidence 33777889999999999999999973 5578999999999987754 445 899999999864
No 112
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.74 E-value=0.054 Score=57.28 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=50.0
Q ss_pred EEEEEEecCCCeeecCCeEEEEEe------cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 102 NIAKWRKKEGDKIEIGDILCEIET------DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 102 ~i~~w~v~~Gd~V~~g~~l~~vet------dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
=|....++.||.|++||+|++|-. .....+|.||.+|+|.-.... -. |..|+.|+.|..
T Consensus 299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~--p~-V~~G~~l~~i~~ 363 (368)
T 3fmc_A 299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFAS--AS-VHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSS--SE-ECTTCEEEEEEE
T ss_pred EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCC--Cc-cCCCCEEEEEee
Confidence 366899999999999999999987 457789999999999766555 45 899999999854
No 113
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=94.43 E-value=0.089 Score=55.26 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=51.4
Q ss_pred eeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEecC
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED 290 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~~ 290 (622)
-+.+..++.||.|++||+|++|+. .+...+|.||.+|+|..+. .... |..|+.|+.|...
T Consensus 276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMED 339 (354)
T ss_dssp EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEE
T ss_pred EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeee
Confidence 377888899999999999999997 4778899999999998764 5666 8999999988643
No 114
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.11 E-value=0.093 Score=55.49 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=50.8
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEec------ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIET------DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet------dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
+=+....++.||.|++||+|++|.. .....+|.||.+|+|..... .-. |..|+.|+.|..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~--~p~-V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFA--SAS-VHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECS--SSE-ECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEee
Confidence 4477789999999999999999998 45678999999999977653 455 999999998864
No 115
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=93.12 E-value=0.077 Score=49.42 Aligned_cols=59 Identities=24% Similarity=0.295 Sum_probs=50.6
Q ss_pred ceEEEEEEEecCCCeeec----CCeEEEEEecceeeEEecCCcEEEEEE-------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI------------------------------- 143 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~----g~~l~~vetdK~~~~i~s~~~G~i~~~------------------------------- 143 (622)
-.|+|+... +..|.|-. |+-++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 468898865 78888877 8888877775 57899999999988
Q ss_pred ----EecCCCccccCCCeEEEEE
Q 006995 144 ----LVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 144 ----~~~~g~~~v~~G~~l~~i~ 162 (622)
++++||. |+.|++|+.++
T Consensus 95 gF~~~V~~Gd~-V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQR-VKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCE-ECTTCEEEEEC
T ss_pred ccEEEEeCcCE-ECCCCEEEEEC
Confidence 8999999 99999999985
No 116
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=91.87 E-value=0.12 Score=47.86 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=49.8
Q ss_pred ceEEEEEEEecCCCeeec----CCeEEEEEecceeeEEecCCcEEEEE--------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAK-------------------------------- 142 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~----g~~l~~vetdK~~~~i~s~~~G~i~~-------------------------------- 142 (622)
-.|+|+... ++.|.|-. |+-++...++ ..+.||++|+|..
T Consensus 14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 458888864 88888877 8888877775 5899999999987
Q ss_pred ---EEecCCCccccCCCeEEEEE
Q 006995 143 ---ILVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 143 ---~~~~~g~~~v~~G~~l~~i~ 162 (622)
+++++||. |+.|++|+.++
T Consensus 90 gF~~~V~~Gd~-V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQE-VNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCE-ECTTCEEEEEC
T ss_pred ceEEEEcCCCE-EcCCCEEEEEC
Confidence 48999999 99999999985
No 117
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=91.77 E-value=0.28 Score=58.91 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=31.9
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEE
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~ 142 (622)
..+|++||.|++||.||+. |--+..|-+.++|+|.=
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f 1037 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRF 1037 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEE
Confidence 4689999999999999987 77889999999998854
No 118
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=91.30 E-value=0.46 Score=49.25 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=48.4
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEe----cceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vet----dK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
+-+...+++.|+.|++||+|+++-. .+...+|.||.+|+|.-.. ..-. |..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence 3466788999999999999999954 4677899999999996664 4445 888998988853
No 119
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=91.02 E-value=0.11 Score=48.39 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=50.0
Q ss_pred ceEEEEEEEecCCCeeec----CCeEEEEEecceeeEEecCCcEEEEEE-------------------------------
Q 006995 99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI------------------------------- 143 (622)
Q Consensus 99 ~eg~i~~w~v~~Gd~V~~----g~~l~~vetdK~~~~i~s~~~G~i~~~------------------------------- 143 (622)
-.|+|+.. .+..|.|-. |+-++...+ ...+.||++|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 46999886 778888777 788887666 457899999999988
Q ss_pred ----EecCCCccccCCCeEEEEE
Q 006995 144 ----LVPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 144 ----~~~~g~~~v~~G~~l~~i~ 162 (622)
++++||. |+.|++|+.++
T Consensus 95 gF~~~V~~Gd~-V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDR-VEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSE-ECSEEEEEEEC
T ss_pred ccEEEEeCCCE-EcCCCEEEEEC
Confidence 8899999 99999999985
No 120
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=89.68 E-value=0.39 Score=44.65 Aligned_cols=58 Identities=28% Similarity=0.349 Sum_probs=48.0
Q ss_pred cceeeEeeeCCCCeeec----CCeeEEEecccceeeEecCCCeeEEEE--------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI-------------------------------- 269 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~s~~~G~v~~i-------------------------------- 269 (622)
.|+|+.+. +..|.+-. |+-++...++ ..+.||.+|+|..+
T Consensus 20 ~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~g 95 (161)
T 1f3z_A 20 SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEG 95 (161)
T ss_dssp CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTT
T ss_pred CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCc
Confidence 46777766 67777766 7888877776 47899999999988
Q ss_pred ---eccCCCeecccCCeEEEEe
Q 006995 270 ---LAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 270 ---~~~~g~~~v~vG~~l~~i~ 288 (622)
++++|+. |+.|++|+.+.
T Consensus 96 F~~~V~~Gd~-V~~G~~L~~~d 116 (161)
T 1f3z_A 96 FKRIAEEGQR-VKVGDTVIEFD 116 (161)
T ss_dssp EEECSCTTCE-ECTTCEEEEEC
T ss_pred cEEEEeCcCE-ECCCCEEEEEC
Confidence 8999999 99999999883
No 121
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=88.64 E-value=0.4 Score=45.71 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=25.5
Q ss_pred EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEE
Q 006995 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA 267 (622)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~ 267 (622)
.++|++|+.|++||.||+-. .|-+..+|+|.
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 56899999999999999865 66777777774
No 122
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=88.50 E-value=1 Score=46.58 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=48.1
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEec----ccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
+-+....++.|+.|++||+|+++.. .+...+|.||.+|+|.-.. .... |..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence 3456677889999999999999955 4567889999999997764 4445 889999988753
No 123
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=87.96 E-value=0.53 Score=43.42 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=46.8
Q ss_pred cceeeEeeeCCCCeeec----CCeeEEEecccceeeEecCCCeeEEE---------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAK--------------------------------- 268 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~s~~~G~v~~--------------------------------- 268 (622)
.|+|+.+. +..|.+-. |+-++...++ ..+.||.+|+|..
T Consensus 15 ~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~g 90 (154)
T 2gpr_A 15 DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNG 90 (154)
T ss_dssp SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCS
T ss_pred CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCc
Confidence 46777764 67777766 7888877776 4789999999997
Q ss_pred --EeccCCCeecccCCeEEEEe
Q 006995 269 --ILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 269 --i~~~~g~~~v~vG~~l~~i~ 288 (622)
+++++|+. |+.|++|+.+.
T Consensus 91 F~~~V~~Gd~-V~~G~~L~~~d 111 (154)
T 2gpr_A 91 FESFVTQDQE-VNAGDKLVTVD 111 (154)
T ss_dssp EEECCCTTCE-ECTTCEEEEEC
T ss_pred eEEEEcCCCE-EcCCCEEEEEC
Confidence 48999999 99999999883
No 124
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=87.21 E-value=0.7 Score=42.72 Aligned_cols=47 Identities=17% Similarity=0.073 Sum_probs=39.8
Q ss_pred eEEEEEEEecCCCeeecCCeEEEEEecceeeE-EecCCcEEEEEEEec
Q 006995 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVP 146 (622)
Q Consensus 100 eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~~-i~s~~~G~i~~~~~~ 146 (622)
||.-+--.+.+||.|.+||.|+-|.|.|-.+- +.||++|+|.-+.-.
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 45556678999999999999999999999886 899999999766543
No 125
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=85.21 E-value=0.6 Score=43.41 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=46.2
Q ss_pred cceeeEeeeCCCCeeec----CCeeEEEecccceeeEecCCCeeEEEE--------------------------------
Q 006995 226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI-------------------------------- 269 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~~i~s~~~G~v~~i-------------------------------- 269 (622)
.|+|+.+ .+..|.+-. |+-++...++ ..+.||.+|+|..+
T Consensus 20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g 95 (162)
T 1ax3_A 20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG 95 (162)
T ss_dssp SEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred ceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence 4677776 567777666 7778776663 47789999999988
Q ss_pred ---eccCCCeecccCCeEEEEe
Q 006995 270 ---LAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 270 ---~~~~g~~~v~vG~~l~~i~ 288 (622)
++++|+. |+.|++|+.+.
T Consensus 96 F~~~V~~Gd~-V~~G~~L~~~d 116 (162)
T 1ax3_A 96 FTSFVSEGDR-VEPGQKLLEVD 116 (162)
T ss_dssp EEESCCCCSE-ECSEEEEEEEC
T ss_pred cEEEEeCCCE-EcCCCEEEEEC
Confidence 8899999 99999998883
No 126
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=84.91 E-value=1.3 Score=40.87 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=39.5
Q ss_pred cceeeEeeeCCCCeeecCCeeEEEeccccee-eEecCCCeeEEEEe
Q 006995 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-EFECLEEGYLAKIL 270 (622)
Q Consensus 226 eg~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-~i~s~~~G~v~~i~ 270 (622)
+|.-+-..+.+|+.|.+||.|+-|.|-|-.+ -+.||.+|+|.-+.
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 4666677889999999999999999999887 48999999998775
No 127
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=84.24 E-value=0.95 Score=43.16 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=37.2
Q ss_pred EEEecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCc
Q 006995 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150 (622)
Q Consensus 105 ~w~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~ 150 (622)
..+|++||.|++||.||+. |+.+..|-+.++|+|.=-...+|.+
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 5699999999999999976 8999999999999996655555543
No 128
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=81.72 E-value=1.3 Score=46.35 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=24.9
Q ss_pred eEeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEE
Q 006995 230 AKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA 267 (622)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~ 267 (622)
..++|++|+.|++||.||+-. .|-+..+|+|.
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 457899999999999999855 55666666653
No 129
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=79.35 E-value=2 Score=40.97 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=37.8
Q ss_pred EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCe
Q 006995 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276 (622)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~ 276 (622)
.++|++|+.|++||.||+. |..+..|-+..+|+|.--.+.+|-+
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 4689999999999999977 6899999999999998776666644
No 130
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=62.63 E-value=2.6 Score=39.74 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=23.2
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEecc
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
|+=-+++|++||+|++||+|+++.-++
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CccceEEEeCcCEEcCCCEEEEECHHH
Confidence 555689999999999999999997653
No 131
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=61.71 E-value=12 Score=35.29 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEeccCCCeecccCCeEEEEe
Q 006995 268 KILAPEGSKDVAVGQPIAITV 288 (622)
Q Consensus 268 ~i~~~~g~~~v~vG~~l~~i~ 288 (622)
+.++++|+. |+.||+|+.+.
T Consensus 119 ~~~V~~Gd~-Vk~Gd~L~~fD 138 (183)
T 3our_B 119 TRIAEEGQT-VKAGDTVIEFD 138 (183)
T ss_dssp EECSCTTCE-ECTTCEEEEEC
T ss_pred eEEEeCcCE-EcCCCEEEEEC
Confidence 568999999 99999999883
No 132
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=56.86 E-value=8.1 Score=46.73 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=32.8
Q ss_pred EeeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCC
Q 006995 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274 (622)
Q Consensus 231 ~w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g 274 (622)
.++|++|+.|++||.|++.. --+..|-+..+|+|.-..+.+|
T Consensus 1002 ~l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~f~d~~~g 1043 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVRFTDMIDG 1043 (1407)
T ss_dssp EESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEEEESCCBT
T ss_pred EEEEcCCCEecCCCEEEEEe--cCceeEEeccceEEEEeeeccC
Confidence 47899999999999999884 5577788888888765444444
No 133
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=53.32 E-value=11 Score=39.12 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=38.8
Q ss_pred EecCCCeeecCCeEEEEEecceeeEEecCCcEEEEEEEecCCCccccCCCeEEEEEc
Q 006995 107 RKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 107 ~v~~Gd~V~~g~~l~~vetdK~~~~i~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~ 163 (622)
.++.|+.|++||+|+++ .| .+|.+|++|.+.- .. .-. |..|+.++.+..
T Consensus 280 ~~~~g~~V~~G~~La~i-~d---~~v~a~~dG~~i~--~p-~p~-V~~G~~~~~i~~ 328 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHD-GD---KPLMAKNDNEAIV--FP-NRH-VAIGQRAALMVC 328 (350)
T ss_dssp TCCBTEECCTTCEEEEE-TT---EEEECSSSSCEEE--SC-CTT-CCTTSEEEEEEE
T ss_pred cccCCCEeCCCCEEEEE-CC---EEEEeCCCCEEEE--ec-CCC-CCCCcEEEEEEE
Confidence 46789999999999998 44 7889999998643 33 456 899998888754
No 134
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=51.59 E-value=9.5 Score=38.52 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=21.0
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++++-.
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G~ 95 (284)
T 1qpo_A 73 VLDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp EEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCEecCCcEEEEEEEe
Confidence 48999999999999999999863
No 135
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=49.56 E-value=8.5 Score=38.93 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++|+-.
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEEc
Confidence 48999999999999999999853
No 136
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=49.22 E-value=9.6 Score=38.74 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=21.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEec
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
.++ +|++++|+.|+.||+|++++-.
T Consensus 84 ~~v-~~~~~dG~~v~~g~~v~~i~G~ 108 (300)
T 3l0g_A 84 VKY-EIHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp EEE-EECCCTTCEECSSCEEEEEEEE
T ss_pred eEE-EEEeCCCCEeeCCCEEEEEEEC
Confidence 444 8999999999999999999853
No 137
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=49.16 E-value=9 Score=38.73 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=20.9
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++|+-.
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G~ 96 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEEc
Confidence 48999999999999999999853
No 138
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=49.09 E-value=9.1 Score=38.70 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEec
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
.++ +|++++|+.|+.||+|++++-.
T Consensus 75 ~~v-~~~~~dG~~v~~g~~v~~i~G~ 99 (287)
T 3tqv_A 75 IQI-TWLYSDAQKVPANARIFELKGN 99 (287)
T ss_dssp CEE-EESSCTTCEECTTCEEEEEEEE
T ss_pred eEE-EEEeCCCCEeeCCCEEEEEEEc
Confidence 344 8999999999999999999853
No 139
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=48.50 E-value=14 Score=38.36 Aligned_cols=50 Identities=20% Similarity=0.138 Sum_probs=39.8
Q ss_pred eeeCCCCeeecCCeeEEEecccceeeEecCCCeeEEEEeccCCCeecccCCeEEEEec
Q 006995 232 WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE 289 (622)
Q Consensus 232 w~v~~Gd~V~~gd~l~~vetdK~~~~i~s~~~G~v~~i~~~~g~~~v~vG~~l~~i~~ 289 (622)
-.++.|+.|++||+|+++- | .+|.+|.+|.+.- .. ... |..|+.++.+..
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~-V~~G~~~~~i~~ 328 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRH-VAIGQRAALMVC 328 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTT-CCTTSEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCC-CCCCcEEEEEEE
Confidence 3468999999999999995 3 6889999998654 33 455 999998887754
No 140
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=47.24 E-value=12 Score=37.41 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.0
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEec
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++| +|.+++|+.|..|++|++|+-.
T Consensus 58 ~~v-~~~~~eG~~v~~g~~~~~v~G~ 82 (273)
T 2b7n_A 58 IEC-VQTIKDKERFKPKDALMEIRGD 82 (273)
T ss_dssp CEE-EEECCTTCEECTTCEEEEEEEE
T ss_pred cEE-EEEcCCCCCcCCCCEEEEEEec
Confidence 554 8999999999999999999863
No 141
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=46.50 E-value=11 Score=38.44 Aligned_cols=23 Identities=30% Similarity=0.878 Sum_probs=20.7
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++|+-.
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G~ 110 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEec
Confidence 38999999999999999999853
No 142
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=45.48 E-value=11 Score=38.66 Aligned_cols=23 Identities=22% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|+.||+|++|+-.
T Consensus 110 v~~~~~dG~~v~~g~~l~~v~G~ 132 (320)
T 3paj_A 110 IEWHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEeCCCCEecCCCEEEEEEec
Confidence 48999999999999999999853
No 143
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=43.78 E-value=12 Score=37.90 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++|++++|+.|..|++|++|+-.
T Consensus 87 v~~~~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEEc
Confidence 48999999999999999999864
No 144
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=40.70 E-value=16 Score=39.08 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=19.3
Q ss_pred EEEEecCCCeeecCCeEEEEEecc
Q 006995 104 AKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
+.++++.||+|++||+|++|-+++
T Consensus 370 i~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 370 VYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp EEESCCTTCEECTTSEEEEEEECS
T ss_pred eeeeccCCCEeCCCCeEEEEEeCC
Confidence 478888888888888888887653
No 145
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=39.93 E-value=16 Score=39.12 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=19.3
Q ss_pred EEEEecCCCeeecCCeEEEEEecc
Q 006995 104 AKWRKKEGDKIEIGDILCEIETDK 127 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetdK 127 (622)
+.++++.||+|++||+|++|-+++
T Consensus 378 i~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 378 IVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp EEESCCTTCEECTTCEEEEEEESS
T ss_pred eeEeccCCCEECCCCeEEEEEcCC
Confidence 478888888888888888887653
No 146
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=38.85 E-value=14 Score=37.45 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.7
Q ss_pred EEEEEEEecCCCeeecCCeEEEEEec
Q 006995 101 GNIAKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
++| +|.+++|+.|..||+|++|+-.
T Consensus 71 ~~v-~~~~~dG~~v~~g~~l~~v~G~ 95 (299)
T 2jbm_A 71 CQV-SWFLPEGSKLVPVARVAEVRGP 95 (299)
T ss_dssp CEE-EESSCTTCEECSSEEEEEEEEE
T ss_pred CEE-EEEcCCCCCCCCCCEEEEEEEc
Confidence 555 8999999999999999999853
No 147
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=37.37 E-value=16 Score=39.10 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=18.8
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+.++++.||+|++||+|++|-.+
T Consensus 381 i~l~~~~G~~V~~g~~l~~i~~~ 403 (436)
T 3h5q_A 381 IVLNKKIGDKVEEGESLLTIHSN 403 (436)
T ss_dssp EEESCCTTCEECTTSEEEEEEES
T ss_pred eEEecCCcCEeCCCCeEEEEeCC
Confidence 57889999999999999888633
No 148
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=37.15 E-value=19 Score=38.94 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.0
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+.++++.||+|++||+|++|-++
T Consensus 413 i~l~~k~G~~V~~g~~l~~i~~~ 435 (474)
T 1uou_A 413 AELLVDVGQRLRRGTPWLRVHRD 435 (474)
T ss_dssp EEECSCTTCEECTTCEEEEEEES
T ss_pred eEEEccCCCEECCCCeEEEEEcC
Confidence 57888888888888888888765
No 149
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=36.21 E-value=38 Score=36.65 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=35.4
Q ss_pred EEecceeeEEecCCcEEE-----------------------------EEEEecCCCccccCCCeEEEEEcCCc
Q 006995 123 IETDKATVEFESLEEGFL-----------------------------AKILVPEGSKDVPVGQPIAITVEDAD 166 (622)
Q Consensus 123 vetdK~~~~i~s~~~G~i-----------------------------~~~~~~~g~~~v~~G~~l~~i~~~~~ 166 (622)
+-.-|...+|.|+.+|+| ..++.+.||. |..|++|++|..+.+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~-V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQR-LRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCE-ECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCE-ECCCCeEEEEEcCCh
Confidence 345677888999999998 5688999999 999999999975443
No 150
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=34.71 E-value=22 Score=35.87 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.3
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecc
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
--++|++++|+.|+.||+|++++-.
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G~ 95 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEEEe
Confidence 3467999999999999999999853
No 151
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=33.78 E-value=21 Score=36.07 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.4
Q ss_pred eEeeeCCCCeeecCCeeEEEecc
Q 006995 230 AKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 230 ~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
++|++++|+.|+.||+|++++-.
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G~ 99 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKGN 99 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEEc
Confidence 58999999999999999999853
No 152
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=33.57 E-value=21 Score=36.02 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=20.9
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-++|++++|+.|+.||+|++++-.
T Consensus 73 ~v~~~~~dG~~v~~g~~v~~i~G~ 96 (286)
T 1x1o_A 73 AFTPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp EEEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEEcCCCCCccCCCEEEEEEEc
Confidence 467999999999999999999853
No 153
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=33.34 E-value=22 Score=36.03 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=20.7
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-++|++++|+.|+.||+|++++-.
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~G~ 108 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEEEC
Confidence 458999999999999999999843
No 154
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=33.27 E-value=20 Score=36.18 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.8
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-++|++++|+.|+.||+|++++-.
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEEEc
Confidence 467999999999999999999853
No 155
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=31.99 E-value=31 Score=36.72 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=17.1
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDK 253 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (622)
+.=+.++++.||.|++||+|++|-+++
T Consensus 367 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 367 GVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp TCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 334556667777777777777666543
No 156
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=31.83 E-value=31 Score=36.85 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=13.9
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
=+.++++.||.|++||+|++|-++
T Consensus 377 Gi~~~~k~g~~v~~g~~l~~i~~~ 400 (433)
T 1brw_A 377 GIVLHKKIGDRVQKGEALATIHSN 400 (433)
T ss_dssp EEEESCCTTCEECTTCEEEEEEES
T ss_pred CeeEeccCCCEECCCCeEEEEEcC
Confidence 345556666666666666665544
No 157
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=31.04 E-value=24 Score=35.74 Aligned_cols=24 Identities=29% Similarity=0.810 Sum_probs=20.6
Q ss_pred eeEeeeCCCCeeecCCeeEEEecc
Q 006995 229 IAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
-++|.+++|+.|+.||+|++|+..
T Consensus 87 ~v~~~~~dG~~v~~g~~l~~v~G~ 110 (298)
T 3gnn_A 87 EVDWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp EEEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEEec
Confidence 357999999999999999999853
No 158
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=30.92 E-value=19 Score=33.83 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.1
Q ss_pred EecCCCccccCCCeEEEEEc
Q 006995 144 LVPEGSKDVPVGQPIAITVE 163 (622)
Q Consensus 144 ~~~~g~~~v~~G~~l~~i~~ 163 (622)
.++.||. |+.||+|+.+..
T Consensus 86 ~V~~G~~-V~~Gq~IG~vG~ 104 (182)
T 3it5_A 86 QVSNGQQ-VSADTKLGVYAG 104 (182)
T ss_dssp CCCTTCE-ECTTCEEEEECS
T ss_pred ccCCCCE-EcCCCEEEeecC
Confidence 3667777 777777777754
No 159
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=30.85 E-value=16 Score=39.12 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.2
Q ss_pred EEEEecCCCeeecCCeEEEEEec
Q 006995 104 AKWRKKEGDKIEIGDILCEIETD 126 (622)
Q Consensus 104 ~~w~v~~Gd~V~~g~~l~~vetd 126 (622)
+.++++.||+|++||+|++|-++
T Consensus 383 i~~~~k~g~~v~~g~~l~~i~~~ 405 (440)
T 2tpt_A 383 FTDMARLGDQVDGQRPLAVIHAK 405 (440)
T ss_dssp EESCCCTTCEEBTTBCSEEEEES
T ss_pred eeEeccCCCEECCCCeEEEEecC
Confidence 57888888999999888888765
No 160
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=30.66 E-value=28 Score=34.77 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=19.4
Q ss_pred eeEeeeCCCCeeecCCeeEEEec
Q 006995 229 IAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
-++|.+++|+.|..|++|++|+.
T Consensus 59 ~v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 59 ECVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEEe
Confidence 35689999999999999998884
No 161
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=29.48 E-value=27 Score=35.81 Aligned_cols=25 Identities=16% Similarity=0.555 Sum_probs=21.1
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecc
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
--++|.+++|+.|+.||+|++|+..
T Consensus 108 ~~v~~~~~dG~~v~~g~~l~~v~G~ 132 (320)
T 3paj_A 108 VSIEWHVQDGDTLTPNQTLCTLTGP 132 (320)
T ss_dssp CEEEESSCTTCEECTTCEEEEEEEE
T ss_pred eEEEEEeCCCCEecCCCEEEEEEec
Confidence 3467999999999999999999843
No 162
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=28.56 E-value=29 Score=35.16 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=20.9
Q ss_pred eeeEeeeCCCCeeecCCeeEEEecc
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIETD 252 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vetd 252 (622)
--++|.+++|+.|..|++|++|+..
T Consensus 85 ~~v~~~~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 85 VRLTWHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp SEEEESCCTTCEECTTCEEEEEEEE
T ss_pred eEEEEEcCCCCEecCCCEEEEEEEc
Confidence 3467999999999999999999853
No 163
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=27.66 E-value=32 Score=36.84 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=20.7
Q ss_pred ceeeEeeeCCCCeeecCCeeEEEeccc
Q 006995 227 GNIAKWRKNEGDKIEVGDVICEIETDK 253 (622)
Q Consensus 227 g~i~~w~v~~Gd~V~~gd~l~~vetdK 253 (622)
+.=+.++++.||.|++||+|++|-+++
T Consensus 380 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 380 SVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CcCeeEeccCCCEECCCCeEEEEecCC
Confidence 445677888888888888888887764
No 164
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=27.64 E-value=26 Score=35.49 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.7
Q ss_pred EEEEEEEecCCCeeecC------CeEEEEEec
Q 006995 101 GNIAKWRKKEGDKIEIG------DILCEIETD 126 (622)
Q Consensus 101 g~i~~w~v~~Gd~V~~g------~~l~~vetd 126 (622)
++| +|.+++|+.|..| ++|++|+-.
T Consensus 67 ~~v-~~~~~eG~~v~~g~~~~~~~~l~~v~G~ 97 (294)
T 3c2e_A 67 LQV-EWLFKEGSFLEPSKNDSGKIVVAKITGP 97 (294)
T ss_dssp CEE-EESSCTTCEECGGGSSSSCEEEEEEEEE
T ss_pred CEE-EEEeCCCCEeCCCCCCCCCcEEEEEEEc
Confidence 455 8999999999999 999999853
No 165
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=26.06 E-value=41 Score=35.95 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=15.0
Q ss_pred CCCceEEEEEEEecCCCeee
Q 006995 96 PTMSQGNIAKWRKKEGDKIE 115 (622)
Q Consensus 96 ~~~~eg~i~~w~v~~Gd~V~ 115 (622)
..=.+..|+..++-.|..++
T Consensus 193 pag~~~~vlgV~~G~gaf~~ 212 (436)
T 3h5q_A 193 AAGADAIVLDVKTGSGAFMK 212 (436)
T ss_dssp HTTCSEEEEEEEESTTSSBC
T ss_pred ccCCCeEEEeeecCccccCC
Confidence 33367888888888888876
No 166
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=25.82 E-value=29 Score=32.47 Aligned_cols=24 Identities=4% Similarity=0.177 Sum_probs=20.1
Q ss_pred eeeEeeeCCCCeeecCCeeEEEec
Q 006995 228 NIAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 228 ~i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
-+.++.|++||.|++||+|..+-.
T Consensus 81 HL~~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 81 HMDQIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp SEESCCCCTTCEECTTCEEEEECS
T ss_pred cCCccccCCCCEEcCCCEEEeecC
Confidence 345667999999999999999874
No 167
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=25.37 E-value=29 Score=34.15 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=8.5
Q ss_pred ecCCCccccCCCeEEEEE
Q 006995 145 VPEGSKDVPVGQPIAITV 162 (622)
Q Consensus 145 ~~~g~~~v~~G~~l~~i~ 162 (622)
++.|+. |..|++|+.+.
T Consensus 137 Vk~Gd~-V~~Gq~IG~vG 153 (245)
T 3tuf_B 137 VEQGDK-VKQNQVIGKSG 153 (245)
T ss_dssp CCTTCE-ECTTCEEEECB
T ss_pred cCCCCE-ECCCCEEEEeC
Confidence 445554 55555555544
No 168
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=25.21 E-value=32 Score=34.85 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.0
Q ss_pred eeEeeeCCCCeeecCCeeEEEec
Q 006995 229 IAKWRKNEGDKIEVGDVICEIET 251 (622)
Q Consensus 229 i~~w~v~~Gd~V~~gd~l~~vet 251 (622)
-++|.+++|+.|..|++|++|+.
T Consensus 72 ~v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 72 QVSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEEcCCCCCCCCCCEEEEEEE
Confidence 35688999999999999888874
No 169
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=23.84 E-value=34 Score=34.57 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=17.1
Q ss_pred EEecCCCccccCCCeEEEEEcCC
Q 006995 143 ILVPEGSKDVPVGQPIAITVEDA 165 (622)
Q Consensus 143 ~~~~~g~~~v~~G~~l~~i~~~~ 165 (622)
+.+++|+. |+.||+|+.+...+
T Consensus 239 i~Vk~Gq~-V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGDK-VKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTCE-ECTTCEEEECCCCS
T ss_pred cccCCcCE-ECCCCEEEEECCCC
Confidence 56788888 88888888886544
No 170
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=23.77 E-value=33 Score=34.46 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=13.1
Q ss_pred EEecCCCccccCCCeEEEEEcC
Q 006995 143 ILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 143 ~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
+.+++||. |+.||+|+.+...
T Consensus 232 i~V~~G~~-V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 232 IDVKLGQQ-VPRGGVLGKVGAT 252 (282)
T ss_dssp ECSCTTCE-ECTTCEEEECCCT
T ss_pred cccCCcCE-ECCCCEEEEECCC
Confidence 34666666 6666666666543
No 171
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=22.45 E-value=1.3e+02 Score=23.44 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=33.3
Q ss_pred CCcceEEEEeeeechHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHhh
Q 006995 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKN 477 (622)
Q Consensus 430 ~~iP~~~~~~evdvt~l~~~rk~~k~~~g~k~t~~~~iikAva~Al~~ 477 (622)
+..+.|++...-++-+-++...+.+ ..|++.+|+.++..+|.+
T Consensus 17 r~~~kf~LRlP~eL~~~L~~~A~~~-----grSlNaeIv~~Le~sl~~ 59 (69)
T 3qoq_A 17 RTADKFVVRLPEGMREQIAEVARSH-----HRSMNSEIIARLEQSLLQ 59 (69)
T ss_dssp TTSEEEEEECCTTHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHH
T ss_pred ccCCceEEECCHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHH
Confidence 5778888888877666555555442 679999999999999975
No 172
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=21.87 E-value=20 Score=29.38 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=14.3
Q ss_pred eeeCCCCeeecCCeeEE
Q 006995 232 WRKNEGDKIEVGDVICE 248 (622)
Q Consensus 232 w~v~~Gd~V~~gd~l~~ 248 (622)
++|++||.|++||.|.+
T Consensus 67 l~V~eGd~V~~G~~Ltd 83 (84)
T 2lmc_B 67 LNVFEGERVERGDVISD 83 (84)
T ss_dssp CSSCTTEEECBSCSSBC
T ss_pred eEeCCCCEECCCCCccC
Confidence 36899999999998853
No 173
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=20.49 E-value=1.3e+02 Score=33.45 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=40.2
Q ss_pred ecCCCeeecCCeEEEEEecc-eeeEE--ecCCcEEEEEEEecCCCccccCCCeEEEEEcC
Q 006995 108 KKEGDKIEIGDILCEIETDK-ATVEF--ESLEEGFLAKILVPEGSKDVPVGQPIAITVED 164 (622)
Q Consensus 108 v~~Gd~V~~g~~l~~vetdK-~~~~i--~s~~~G~i~~~~~~~g~~~v~~G~~l~~i~~~ 164 (622)
+++||.|..||++++|+-.. ....| +....|+|+.+ .+|+ ..+-++++.+++.
T Consensus 131 ~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~--~~v~~~v~~i~~~ 186 (600)
T 3vr4_A 131 IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGS--FTIDDPICVIETE 186 (600)
T ss_dssp SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEE--ECTTSCCEEEEET
T ss_pred cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCc--ceeceeEEEEecc
Confidence 79999999999999987443 33444 34478999987 6664 5788899988653
Done!