Query 006996
Match_columns 622
No_of_seqs 358 out of 1971
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2013 SMT3/SUMO-activating c 100.0 1E-111 3E-116 891.6 32.3 483 1-510 31-533 (603)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 1E-89 2.2E-94 808.0 32.7 458 2-472 439-969 (1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 9.4E-88 2E-92 728.6 33.4 383 1-451 18-427 (435)
4 KOG2012 Ubiquitin activating e 100.0 1.2E-85 2.6E-90 727.1 17.9 454 5-473 458-976 (1013)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.2E-81 2.7E-86 658.3 26.3 294 1-403 18-312 (312)
6 KOG2015 NEDD8-activating compl 100.0 3.1E-63 6.7E-68 503.9 25.0 349 1-497 59-420 (422)
7 cd01484 E1-2_like Ubiquitin ac 100.0 3.8E-63 8.3E-68 501.0 21.0 216 1-363 18-234 (234)
8 cd01488 Uba3_RUB Ubiquitin act 100.0 8E-63 1.7E-67 511.6 21.9 264 1-404 18-291 (291)
9 PRK08223 hypothetical protein; 100.0 1.2E-28 2.5E-33 255.2 13.7 128 1-130 46-175 (287)
10 TIGR02356 adenyl_thiF thiazole 100.0 2.2E-28 4.7E-33 242.9 12.5 144 1-145 40-184 (202)
11 PRK07411 hypothetical protein; 99.9 6.3E-28 1.4E-32 261.7 13.7 163 1-165 57-223 (390)
12 PRK05597 molybdopterin biosynt 99.9 1E-27 2.2E-32 257.1 13.3 163 1-165 47-213 (355)
13 PRK05690 molybdopterin biosynt 99.9 1.7E-27 3.7E-32 243.3 13.4 140 1-141 51-191 (245)
14 cd00757 ThiF_MoeB_HesA_family 99.9 3.9E-27 8.5E-32 238.0 13.0 163 1-165 40-205 (228)
15 TIGR02355 moeB molybdopterin s 99.9 7.3E-27 1.6E-31 237.9 13.7 161 1-164 43-207 (240)
16 PRK08328 hypothetical protein; 99.9 1.7E-26 3.7E-31 234.0 12.6 129 1-130 46-175 (231)
17 PRK07878 molybdopterin biosynt 99.9 2.5E-26 5.4E-31 249.4 14.4 163 1-164 61-230 (392)
18 PRK05600 thiamine biosynthesis 99.9 3.3E-26 7.1E-31 246.5 13.4 162 1-165 60-229 (370)
19 COG0476 ThiF Dinucleotide-util 99.9 5.1E-26 1.1E-30 233.2 13.5 144 1-145 49-196 (254)
20 PRK12475 thiamine/molybdopteri 99.9 4.8E-26 1E-30 242.5 13.7 144 1-145 43-188 (338)
21 cd01491 Ube1_repeat1 Ubiquitin 99.9 8.9E-26 1.9E-30 234.6 13.6 147 1-155 38-186 (286)
22 PRK08762 molybdopterin biosynt 99.9 2.4E-25 5.3E-30 240.6 13.9 163 1-165 154-324 (376)
23 PRK07688 thiamine/molybdopteri 99.9 2.4E-25 5.1E-30 237.3 13.0 143 1-144 43-187 (339)
24 KOG2017 Molybdopterin synthase 99.9 1.4E-25 3E-30 231.4 7.2 146 1-147 85-232 (427)
25 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 1.6E-24 3.5E-29 220.4 11.3 148 8-162 47-219 (244)
26 TIGR01381 E1_like_apg7 E1-like 99.9 7.3E-24 1.6E-28 237.2 13.1 163 1-166 357-563 (664)
27 cd01492 Aos1_SUMO Ubiquitin ac 99.9 1.8E-23 3.9E-28 207.1 11.5 114 1-116 40-153 (197)
28 PF02134 UBACT: Repeat in ubiq 99.9 8.6E-24 1.9E-28 174.2 7.6 67 303-369 1-67 (67)
29 PRK14851 hypothetical protein; 99.9 1.6E-23 3.6E-28 239.9 12.2 129 1-131 62-192 (679)
30 cd01486 Apg7 Apg7 is an E1-lik 99.9 4.4E-23 9.5E-28 214.1 13.2 162 1-165 18-223 (307)
31 PF00899 ThiF: ThiF family; I 99.9 2.3E-23 4.9E-28 193.7 9.8 114 1-115 21-134 (135)
32 cd01485 E1-1_like Ubiquitin ac 99.9 5.7E-23 1.2E-27 203.7 11.5 116 1-116 38-156 (198)
33 PRK14852 hypothetical protein; 99.9 4.8E-23 1E-27 239.7 12.2 128 1-130 351-480 (989)
34 cd01483 E1_enzyme_family Super 99.9 1E-22 2.3E-27 190.8 11.8 116 1-117 18-133 (143)
35 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.6E-22 3.5E-27 196.6 12.4 125 1-127 18-145 (174)
36 TIGR03603 cyclo_dehy_ocin bact 99.9 1.2E-22 2.5E-27 214.9 10.1 116 1-129 92-209 (318)
37 PRK07877 hypothetical protein; 99.9 1.9E-22 4.2E-27 231.8 11.7 135 1-140 125-265 (722)
38 cd01493 APPBP1_RUB Ubiquitin a 99.9 3E-20 6.6E-25 203.0 22.1 128 1-129 39-167 (425)
39 PRK08644 thiamine biosynthesis 99.8 2.7E-21 5.9E-26 193.6 11.2 124 1-126 47-173 (212)
40 cd00755 YgdL_like Family of ac 99.8 3E-21 6.5E-26 195.5 10.1 111 1-111 30-140 (231)
41 PRK15116 sulfur acceptor prote 99.8 1.8E-19 4E-24 185.9 10.7 108 1-109 49-157 (268)
42 TIGR01408 Ube1 ubiquitin-activ 99.8 4.5E-19 9.7E-24 210.6 13.1 121 1-129 43-165 (1008)
43 COG1179 Dinucleotide-utilizing 99.8 3E-19 6.6E-24 178.3 7.1 108 1-108 49-156 (263)
44 KOG2336 Molybdopterin biosynth 99.8 5.3E-19 1.1E-23 178.3 8.4 125 3-129 103-241 (422)
45 PRK06153 hypothetical protein; 99.8 1.8E-18 3.9E-23 184.9 10.1 121 1-131 195-319 (393)
46 TIGR02354 thiF_fam2 thiamine b 99.8 3.9E-18 8.5E-23 169.4 11.2 123 1-127 40-168 (200)
47 PF14732 UAE_UbL: Ubiquitin/SU 99.7 2.2E-17 4.7E-22 143.0 6.0 87 409-504 1-87 (87)
48 PF10585 UBA_e1_thiolCys: Ubiq 99.5 9.3E-16 2E-20 116.5 -0.2 45 119-164 1-45 (45)
49 KOG2014 SMT3/SUMO-activating c 99.4 6.1E-13 1.3E-17 136.5 8.7 115 1-117 50-164 (331)
50 KOG2018 Predicted dinucleotide 99.4 5.4E-13 1.2E-17 137.1 5.9 108 1-108 93-200 (430)
51 PTZ00245 ubiquitin activating 99.3 6.5E-12 1.4E-16 127.3 6.9 77 1-85 45-121 (287)
52 KOG2012 Ubiquitin activating e 99.2 3.9E-11 8.4E-16 135.9 8.8 148 1-156 56-205 (1013)
53 KOG2016 NEDD8-activating compl 99.1 4.1E-11 8.8E-16 128.2 6.0 119 1-119 46-165 (523)
54 TIGR03693 ocin_ThiF_like putat 99.0 3.8E-10 8.3E-15 126.6 7.7 110 1-128 148-262 (637)
55 KOG2337 Ubiquitin activating E 98.9 3.8E-09 8.3E-14 115.0 10.1 162 2-166 360-567 (669)
56 PF08825 E2_bind: E2 binding d 98.8 1E-08 2.2E-13 88.3 6.6 81 410-498 1-83 (84)
57 PF09358 UBA_e1_C: Ubiquitin-a 98.8 3.1E-09 6.8E-14 98.3 2.3 88 373-472 1-91 (125)
58 cd01490 Ube1_repeat2 Ubiquitin 97.6 7.7E-05 1.7E-09 82.5 5.8 32 299-330 245-276 (435)
59 PF05237 MoeZ_MoeB: MoeZ/MoeB 93.9 0.11 2.5E-06 44.6 5.2 59 343-405 22-82 (84)
60 TIGR02355 moeB molybdopterin s 93.4 0.11 2.4E-06 53.4 5.1 57 343-403 182-240 (240)
61 PRK12475 thiamine/molybdopteri 91.3 0.33 7.2E-06 52.5 5.7 60 344-405 184-245 (338)
62 TIGR03882 cyclo_dehyd_2 bacter 91.0 0.34 7.4E-06 48.2 5.1 41 87-127 152-193 (193)
63 PRK08762 molybdopterin biosynt 89.9 0.49 1.1E-05 51.8 5.5 57 345-405 300-358 (376)
64 PRK07688 thiamine/molybdopteri 88.6 0.75 1.6E-05 49.8 5.8 58 345-405 185-245 (339)
65 TIGR03603 cyclo_dehy_ocin bact 87.7 0.96 2.1E-05 48.5 5.8 75 346-426 239-316 (318)
66 COG4015 Predicted dinucleotide 84.5 4.6 0.0001 39.3 8.0 95 3-103 42-139 (217)
67 PF14560 Ubiquitin_2: Ubiquiti 83.4 2.7 5.9E-05 36.1 5.5 69 407-487 15-84 (87)
68 PF11543 UN_NPL4: Nuclear pore 82.4 1.4 3.1E-05 37.7 3.3 64 407-484 15-78 (80)
69 PF01113 DapB_N: Dihydrodipico 80.0 2.5 5.3E-05 38.9 4.3 41 68-110 62-102 (124)
70 PF10087 DUF2325: Uncharacteri 76.2 19 0.00041 31.5 8.6 72 37-110 11-87 (97)
71 PRK05600 thiamine biosynthesis 74.9 4 8.7E-05 44.7 4.9 77 343-425 203-281 (370)
72 PRK05690 molybdopterin biosynt 74.5 4.5 9.7E-05 41.7 4.8 27 344-370 191-217 (245)
73 PF00240 ubiquitin: Ubiquitin 73.5 16 0.00035 29.4 7.0 56 407-483 7-64 (69)
74 PF13241 NAD_binding_7: Putati 70.6 18 0.00039 32.0 7.1 64 41-105 19-92 (103)
75 PF10585 UBA_e1_thiolCys: Ubiq 69.2 2.9 6.3E-05 32.0 1.5 20 191-210 26-45 (45)
76 cd00757 ThiF_MoeB_HesA_family 67.5 6.1 0.00013 40.1 3.9 29 342-370 178-206 (228)
77 PRK07411 hypothetical protein; 63.1 10 0.00022 41.9 4.9 56 345-404 199-256 (390)
78 PF03808 Glyco_tran_WecB: Glyc 62.6 37 0.0008 33.0 8.2 65 38-102 61-130 (172)
79 cd01795 USP48_C USP ubiquitin- 61.5 18 0.0004 32.5 5.2 59 408-484 17-75 (107)
80 cd01789 Alp11_N Ubiquitin-like 60.9 32 0.0007 29.5 6.6 67 409-487 16-82 (84)
81 PF05237 MoeZ_MoeB: MoeZ/MoeB 60.0 3 6.6E-05 35.8 0.1 45 119-164 1-47 (84)
82 PF03435 Saccharop_dh: Sacchar 58.8 13 0.00028 40.5 4.8 54 50-104 44-97 (386)
83 TIGR02356 adenyl_thiF thiazole 58.5 7.2 0.00016 38.9 2.5 25 342-366 178-202 (202)
84 COG1748 LYS9 Saccharopine dehy 58.3 18 0.0004 40.0 5.8 55 53-108 48-102 (389)
85 cd06533 Glyco_transf_WecG_TagA 56.7 56 0.0012 31.7 8.3 66 38-103 59-129 (171)
86 PRK08328 hypothetical protein; 56.6 12 0.00027 38.1 3.9 27 344-370 183-209 (231)
87 PRK08644 thiamine biosynthesis 56.5 9.6 0.00021 38.4 3.0 27 343-369 183-209 (212)
88 PRK05562 precorrin-2 dehydroge 55.5 59 0.0013 33.3 8.5 42 65-106 77-118 (223)
89 PRK05597 molybdopterin biosynt 55.2 15 0.00033 39.9 4.5 28 343-370 187-214 (355)
90 cd01796 DDI1_N DNA damage indu 53.9 49 0.0011 27.2 6.4 60 407-484 11-70 (71)
91 cd01805 RAD23_N Ubiquitin-like 53.7 49 0.0011 27.2 6.4 60 406-484 11-72 (77)
92 cd01800 SF3a120_C Ubiquitin-li 52.9 47 0.001 27.6 6.2 59 407-484 9-67 (76)
93 TIGR00696 wecB_tagA_cpsF bacte 50.8 72 0.0016 31.4 8.1 66 37-103 60-130 (177)
94 cd05298 GH4_GlvA_pagL_like Gly 50.3 49 0.0011 37.2 7.6 86 5-114 28-115 (437)
95 PRK00048 dihydrodipicolinate r 49.2 28 0.00062 36.0 5.2 40 69-110 56-95 (257)
96 cd01812 BAG1_N Ubiquitin-like 49.2 47 0.001 26.7 5.5 58 408-484 12-69 (71)
97 KOG2013 SMT3/SUMO-activating c 48.6 12 0.00025 42.3 2.3 55 302-356 243-297 (603)
98 cd01806 Nedd8 Nebb8-like ubiq 48.4 58 0.0013 26.4 6.0 59 407-484 12-70 (76)
99 PF11976 Rad60-SLD: Ubiquitin- 47.0 32 0.0007 27.9 4.2 58 407-483 12-70 (72)
100 cd01798 parkin_N amino-termina 46.8 56 0.0012 26.5 5.6 59 406-483 9-67 (70)
101 KOG2336 Molybdopterin biosynth 45.9 18 0.0004 38.2 3.1 57 340-400 256-312 (422)
102 cd01807 GDX_N ubiquitin-like d 45.4 62 0.0013 26.6 5.7 58 407-483 12-69 (74)
103 TIGR01851 argC_other N-acetyl- 43.6 68 0.0015 34.5 7.1 78 45-123 20-99 (310)
104 KOG2017 Molybdopterin synthase 42.8 29 0.00064 37.8 4.1 54 352-406 234-287 (427)
105 PRK07878 molybdopterin biosynt 41.5 34 0.00074 37.8 4.6 26 345-370 207-232 (392)
106 PTZ00044 ubiquitin; Provisiona 39.4 1.1E+02 0.0023 25.1 6.3 58 406-484 11-70 (76)
107 PF01118 Semialdhyde_dh: Semia 38.0 43 0.00092 30.3 4.0 37 69-106 62-98 (121)
108 TIGR01470 cysG_Nterm siroheme 37.2 2.6E+02 0.0057 28.0 9.8 42 66-107 62-103 (205)
109 PRK12549 shikimate 5-dehydroge 36.8 62 0.0013 34.1 5.5 53 3-81 148-200 (284)
110 cd01809 Scythe_N Ubiquitin-lik 36.4 93 0.002 24.9 5.4 59 407-484 12-70 (72)
111 smart00213 UBQ Ubiquitin homol 36.4 65 0.0014 24.9 4.3 54 407-479 11-64 (64)
112 cd01492 Aos1_SUMO Ubiquitin ac 35.4 41 0.00089 33.4 3.7 25 347-371 155-179 (197)
113 cd01769 UBL Ubiquitin-like dom 35.3 1.7E+02 0.0037 22.8 6.7 60 407-485 9-68 (69)
114 cd01485 E1-1_like Ubiquitin ac 35.3 43 0.00093 33.3 3.8 51 320-372 131-181 (198)
115 cd01803 Ubiquitin Ubiquitin. U 35.3 1.1E+02 0.0025 24.6 5.8 59 407-484 12-70 (76)
116 cd01810 ISG15_repeat2 ISG15 ub 35.3 95 0.0021 25.5 5.3 57 407-484 10-68 (74)
117 cd01802 AN1_N ubiquitin-like d 33.7 1.1E+02 0.0024 27.3 5.9 60 405-483 37-96 (103)
118 PRK05339 PEP synthetase regula 33.1 1.1E+02 0.0024 32.2 6.6 80 24-104 5-89 (269)
119 cd01808 hPLIC_N Ubiquitin-like 32.7 1E+02 0.0023 25.0 5.1 56 409-483 13-68 (71)
120 cd01793 Fubi Fubi ubiquitin-li 32.6 1.2E+02 0.0025 25.0 5.4 59 407-484 10-68 (74)
121 PF03618 Kinase-PPPase: Kinase 32.1 1.2E+02 0.0026 31.8 6.5 71 33-104 8-83 (255)
122 PRK13601 putative L7Ae-like ri 31.7 95 0.0021 26.8 4.8 39 73-111 24-63 (82)
123 cd01799 Hoil1_N Ubiquitin-like 31.0 1.4E+02 0.0031 25.0 5.8 59 406-483 13-72 (75)
124 PRK10637 cysG siroheme synthas 28.8 2.1E+02 0.0045 32.3 8.3 41 65-105 64-104 (457)
125 COG1922 WecG Teichoic acid bio 28.4 2.1E+02 0.0046 29.9 7.6 64 38-102 121-190 (253)
126 cd01794 DC_UbP_C dendritic cel 28.2 1.3E+02 0.0029 24.7 5.0 58 407-483 10-67 (70)
127 cd01763 Sumo Small ubiquitin-r 27.9 1.4E+02 0.0029 25.6 5.2 59 407-484 23-81 (87)
128 cd01791 Ubl5 UBL5 ubiquitin-li 27.4 2E+02 0.0044 23.9 6.0 58 407-483 13-70 (73)
129 PRK13602 putative ribosomal pr 26.3 1.2E+02 0.0026 26.0 4.5 36 73-108 27-63 (82)
130 cd01792 ISG15_repeat1 ISG15 ub 25.6 1.4E+02 0.0029 25.1 4.7 60 407-483 14-73 (80)
131 PHA00736 hypothetical protein 25.3 1E+02 0.0023 25.5 3.7 32 336-368 29-60 (79)
132 cd05197 GH4_glycoside_hydrolas 25.2 2.4E+02 0.0053 31.6 7.9 87 5-115 28-116 (425)
133 TIGR03882 cyclo_dehyd_2 bacter 24.4 16 0.00035 36.3 -1.3 25 3-27 127-160 (193)
134 TIGR03693 ocin_ThiF_like putat 23.7 1.2E+02 0.0027 35.6 5.3 53 348-405 281-336 (637)
135 cd05296 GH4_P_beta_glucosidase 23.6 1.9E+02 0.0041 32.4 6.7 86 5-113 28-115 (419)
136 PRK06719 precorrin-2 dehydroge 23.5 5.2E+02 0.011 24.7 8.9 35 66-101 63-97 (157)
137 PRK06718 precorrin-2 dehydroge 23.4 3.4E+02 0.0074 27.0 7.9 36 68-104 65-100 (202)
138 TIGR03677 rpl7ae 50S ribosomal 22.7 1.6E+02 0.0034 27.0 4.9 37 72-108 41-79 (117)
139 cd01813 UBP_N UBP ubiquitin pr 22.0 2.5E+02 0.0053 23.4 5.6 58 408-483 12-71 (74)
140 TIGR00829 FRU PTS system, fruc 22.0 2.1E+02 0.0045 24.7 5.2 68 34-106 9-80 (85)
141 PRK03692 putative UDP-N-acetyl 21.6 3.9E+02 0.0085 27.7 8.1 64 38-103 118-187 (243)
142 PRK07714 hypothetical protein; 21.4 1.5E+02 0.0033 26.2 4.4 35 73-107 34-69 (100)
143 cd01797 NIRF_N amino-terminal 20.5 2.7E+02 0.0059 23.4 5.5 52 415-484 21-72 (78)
144 cd01815 BMSC_UbP_N Ubiquitin-l 20.3 1.6E+02 0.0034 25.1 4.0 56 413-483 17-72 (75)
No 1
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-111 Score=891.63 Aligned_cols=483 Identities=48% Similarity=0.752 Sum_probs=407.7
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+.+|.++|||||+|||++||||||||||++|||++||.||++.++++||++++.+|+++|++..|+.+||+|||+|+||
T Consensus 31 Lal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~Na 110 (603)
T KOG2013|consen 31 LALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNA 110 (603)
T ss_pred HHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEeccccccCcchHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeeehhhhHHHHH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFA 160 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~wa~~~~f~ 160 (622)
|||.+||+|||++|+.+++|||+|||.||.|||++|.+|.|+||+|.++|.|++||+|||||+|+.|+|||+|||+++|.
T Consensus 111 LDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~ 190 (603)
T KOG2013|consen 111 LDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFN 190 (603)
T ss_pred hccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCCCCCcCCceEeecCCCCceeeeeehHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCccc--ccccCCCcc---------cchhhHHhhhhcCChhhHHHHH-----HHhhhccccccHHHHhcCCcccC
Q 006996 161 KLFGDKNQEN--DLNVRSSDA---------SSSAHAEDVFVRRKDEDIDQYG-----RRIYDHVFGYNIEVASSNEETWK 224 (622)
Q Consensus 161 ~lF~~~~~~~--dl~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~a-----~~lf~~~F~~~I~~Ll~~~~~W~ 224 (622)
+|||+..... ..+....+. ...+...++++++......... ..+|+++|..||++||.|+..|+
T Consensus 191 qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk 270 (603)
T KOG2013|consen 191 QLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWK 270 (603)
T ss_pred HHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhcc
Confidence 9999744321 111111110 0111223333333222222222 56899999999999999999999
Q ss_pred CCCCCCcccCCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCC--c
Q 006996 225 NRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGN--L 302 (622)
Q Consensus 225 ~rr~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~--l 302 (622)
.|++|.||+|...+.....+.+... + +.--...++|.+|++.++..+|..+++.+.-+..+.... +
T Consensus 271 ~r~~p~pl~~~~~i~~~~~t~ns~~----------q--~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l 338 (603)
T KOG2013|consen 271 PRSRPVPLSIAEVISTSLETINSIV----------Q--SITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESDHWYL 338 (603)
T ss_pred CCCCCCCcchhhccCCccccccchh----------h--hccccccCCcceeeeccccHHHHHHHHHhcccCCccCCCceE
Confidence 9999999999876655443322111 0 111134578999999999999999999986665554455 8
Q ss_pred cCCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeeccc
Q 006996 303 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHI 382 (622)
Q Consensus 303 ~FDKDD~~h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~ 382 (622)
.|||||...|+||+||||+||++|+||++|+|++|+||||||||||||||||||++|+|++|+|++....++++|+..+|
T Consensus 339 ~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~~f~~~~~ 418 (603)
T KOG2013|consen 339 IFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNMIFLAKRP 418 (603)
T ss_pred EEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhccchhcceeeEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred c-cceeecccCCCCCCCCcccCCcccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeec-CcEEEeeCCCccHHHHHHH
Q 006996 383 T-KKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHG-SNLLYEVGDDLDEVEVANY 460 (622)
Q Consensus 383 ~-~~~~~~~~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g-~~~LY~~~~~l~~~~~~~~ 460 (622)
. +++++.|..+.||||.||||+...+.++++...+||..|+++|+|.+++| .|.|+.- ..++|+. .|
T Consensus 419 n~r~r~l~~~~~~~PNp~C~vCs~~~~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~Li~~~----------d~ 487 (603)
T KOG2013|consen 419 NPRKRVLLPWALRPPNPNCPVCSEVPLVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDLIDDM----------DF 487 (603)
T ss_pred CccceeecccccCCCCCCCccccccceEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhhcccc----------cc
Confidence 3 78899999999999999999998899999999999999999999999999 6776543 3455543 37
Q ss_pred hhhhhcccccCCCCCCCCcEEEEeeCCCCeEEEEEEEeccCCCCCCCCCc
Q 006996 461 AANLEKVLSQLPSPVTNGTMLTVEDLQQELTCNINIKHREEFDEEKEPDG 510 (622)
Q Consensus 461 ~~nl~k~L~el~~~i~~g~~l~v~D~~~~~~~~l~i~~~~~~~~~~~~~~ 510 (622)
++|+.|+|+|| ||.+|+.+.+-|.-.+-.++ +...+.-..+..|..
T Consensus 488 e~n~~k~lsel--~i~ngsli~~~~e~~d~~~~--~~~~~~~~~~~l~~~ 533 (603)
T KOG2013|consen 488 EDNLDKTLSEL--GILNGSLINVKDEILDPVLE--VHFTESRNTEGLPLD 533 (603)
T ss_pred hhhhhhhHHhh--CCCCCceEeeecccCCccee--eeecccccccccchh
Confidence 89999999999 99999999999976665555 333333334556653
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1e-89 Score=808.02 Aligned_cols=458 Identities=29% Similarity=0.401 Sum_probs=366.8
Q ss_pred cccCc-----cEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCC---CCchhhhhcc
Q 006996 2 VSERQ-----LEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD---PKFNVEFFKQ 73 (622)
Q Consensus 2 v~~Gv-----G~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~---~~~~~~f~~~ 73 (622)
++.|+ |+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++.. ..++.+||++
T Consensus 439 al~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~ 518 (1008)
T TIGR01408 439 ALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEK 518 (1008)
T ss_pred HHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhC
Confidence 46688 999999999999999999999999999999999999999999999999999999953 3466789999
Q ss_pred CCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeeehh
Q 006996 74 FNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVW 153 (622)
Q Consensus 74 ~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~w 153 (622)
+|+|++|+||+++|++||++|+.+++|||++|+.|+.|++++++|+.|+||.|.++|+++++|+|||+++|+.++|||+|
T Consensus 519 ~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~w 598 (1008)
T TIGR01408 519 LDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQW 598 (1008)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred hhHHHHHHHhCCCCccc-ccccCC------------Ccc-cchhhHHhhh---hcCChhhHHHHHHHhhhccccccHHHH
Q 006996 154 AKDLLFAKLFGDKNQEN-DLNVRS------------SDA-SSSAHAEDVF---VRRKDEDIDQYGRRIYDHVFGYNIEVA 216 (622)
Q Consensus 154 a~~~~f~~lF~~~~~~~-dl~~~~------------~~~-~~~~~~~~~~---~~~~~~~~~~~a~~lf~~~F~~~I~~L 216 (622)
|++ +|+.+|+..++.. .+...+ ... ..++.+...+ .+.++++|++||+.+|+++|+++|+||
T Consensus 599 a~~-~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qL 677 (1008)
T TIGR01408 599 ARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQL 677 (1008)
T ss_pred HHH-HHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 8999999765532 111110 000 1223333333 245799999999999999999999999
Q ss_pred hcC----------CcccCC-CCCCCcccCCCCCC---------cchhhhcccccccccccc-hhh-hHHhhcCC-----C
Q 006996 217 SSN----------EETWKN-RNRPKPIYSADVMP---------ENLTEQNGNVAKNCVVDT-SSV-SAMASLGL-----K 269 (622)
Q Consensus 217 l~~----------~~~W~~-rr~P~pl~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~-s~~~~~~~-----~ 269 (622)
|.+ ++||++ ||+|+||.|+...+ +.+++.++++........ ... ..+....+ +
T Consensus 678 l~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~ 757 (1008)
T TIGR01408 678 LHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPR 757 (1008)
T ss_pred HHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCC
Confidence 987 899997 99999999995322 346677777732100000 000 00111111 1
Q ss_pred CCCCccccc------cchHHHHHHHHHHHHhhh--------hccCCccCCCCcHh--HHHHHHHHHHHHHHHcCCCCCCH
Q 006996 270 NPQDTWTLL------ESSRIFLEALKLFFAKRE--------KEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHSL 333 (622)
Q Consensus 270 ~~~~~~s~~------e~~~~f~~~~~~~~~~~~--------~~~~~l~FDKDD~~--h~dFV~AaaNLRA~~f~I~~~s~ 333 (622)
...++|+-+ ++...+.+.+.+++.+.. ..+.|++|||||+. |||||+|||||||+||+||++||
T Consensus 758 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~ 837 (1008)
T TIGR01408 758 SNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADR 837 (1008)
T ss_pred cCceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccH
Confidence 223445321 111123445555544321 23789999999998 99999999999999999999999
Q ss_pred HHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcC--cccceeeEeecccccceeecccCCCCCCCCcccCCcc-cEE-
Q 006996 334 FEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSET-PLS- 409 (622)
Q Consensus 334 ~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~--~~~~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~~-~~~- 409 (622)
|++|+||||||||||||||+||||+|||+||++.+. .+.|||+|+|++.. ++..++|.+|.+.|+....| ++|
T Consensus 838 ~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nlalp---~~~~seP~~~~~~~~~~~~~~t~WD 914 (1008)
T TIGR01408 838 FKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNLAIP---LFVFTEPTEVRKTKIRNGISFTIWD 914 (1008)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhhccc---cccccCCCCCCceeecCceeccceE
Confidence 999999999999999999999999999999999986 38899999999832 35567777777666554555 565
Q ss_pred -EEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCC
Q 006996 410 -LEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLP 472 (622)
Q Consensus 410 -l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~ 472 (622)
+.++ .++||++|+++ ++++||+++.||++|.++||+.++. ..+++|+++|+||.
T Consensus 915 r~~i~-~~~Tl~~~i~~-~~~~~~~~v~~is~g~~~lY~~~~~-------~~~erl~~~l~el~ 969 (1008)
T TIGR01408 915 RWTLH-GDFTLLEFINA-VKEKYGLEPTMVSQGVKLLYVPVMP-------GHAERLKLKMHKLV 969 (1008)
T ss_pred EEEec-CCCcHHHHHHH-HHHHhCCeeEEEEcCceEEEeccch-------hhHHhcCCCHHHHH
Confidence 4454 48999999999 5889999999999999999998852 24678999999994
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=9.4e-88 Score=728.59 Aligned_cols=383 Identities=32% Similarity=0.506 Sum_probs=328.9
Q ss_pred CcccCc-----cEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCC---CCchhhhhc
Q 006996 1 MVSERQ-----LEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD---PKFNVEFFK 72 (622)
Q Consensus 1 lv~~Gv-----G~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~---~~~~~~f~~ 72 (622)
|++.|+ |+|+|+|+|+||.|||||||||+.+|||++||++|+++++++||+++|+++..++.+ ..++.+||+
T Consensus 18 Lal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~~~v~~~~~~~~~~~f~~ 97 (435)
T cd01490 18 FALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQNRVGPETEHIFNDEFWE 97 (435)
T ss_pred HHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEecccChhhhhhhhHHHhc
Confidence 356788 999999999999999999999999999999999999999999999999999999853 346679999
Q ss_pred cCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeeeh
Q 006996 73 QFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIV 152 (622)
Q Consensus 73 ~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~ 152 (622)
++|+|++|+||+++|++||++|+.+++|||++|+.|+.|++++++|+.|+||+|..+|+++++|+|||+++|+.++|||+
T Consensus 98 ~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~P~Ctl~~~P~~~eHcI~ 177 (435)
T cd01490 98 KLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSIPLCTLKNFPNAIEHTIQ 177 (435)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCCCCccccCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred hhhHHHHHHHhCCCCcccccccCCCcccchhhHHhhhhcCChhhHHHHHHHhhhccccccHHHHhcC----------Ccc
Q 006996 153 WAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EET 222 (622)
Q Consensus 153 wa~~~~f~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~----------~~~ 222 (622)
||++ +|+.+|++..+. ++..+ +++|++||+.+|+++|+++|++||.+ ++|
T Consensus 178 wA~~-~F~~lF~~~~~~---------------~~~~~----~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~f 237 (435)
T cd01490 178 WARD-EFEGLFKQPPEN---------------VNQYL----FEDCVRWARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPF 237 (435)
T ss_pred HHHH-HHHHHhccchHH---------------HHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccc
Confidence 9999 899999874321 11111 68999999999999999999999996 899
Q ss_pred cCC-CCCCCcccCCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCC
Q 006996 223 WKN-RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGN 301 (622)
Q Consensus 223 W~~-rr~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~ 301 (622)
|++ ||+|+||.|+...+ ....|+.+...+..+. .+.
T Consensus 238 w~~~kr~P~p~~fd~~~~----------------------------------------~h~~fv~~~a~l~a~~---~~~ 274 (435)
T cd01490 238 WSGPKRCPTPLEFDVNNP----------------------------------------LHLDFVLAAANLYAEV---YGI 274 (435)
T ss_pred ccCCCCCCCCCCCCCCCH----------------------------------------HHHHHHHHHHHHHHHh---cCC
Confidence 997 88999999984211 1123555555544432 122
Q ss_pred ccCCCCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcC--cccceeeE
Q 006996 302 LSFDKDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTY 377 (622)
Q Consensus 302 l~FDKDD~~--h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~--~~~~r~~f 377 (622)
..|||||+. ||+||+|||||||+||+|++.|++++|+|||||||||||||||||||+|+|++|++++. .+.|||+|
T Consensus 275 ~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~ 354 (435)
T cd01490 275 PGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAF 354 (435)
T ss_pred CccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHh
Confidence 249999996 99999999999999999999999999999999999999999999999999999999986 47899999
Q ss_pred eecccccceeecccCC-CCCCCCcccCCcccEE--EEEcCCCCCHHHHH-HHHHHHhcCCCCcceeecCcEEEeeCCC
Q 006996 378 CLEHITKKMLLMPVEP-YEPNKSCYVCSETPLS--LEINTSRSKLRDFV-EKIVKAKLGINFPLIMHGSNLLYEVGDD 451 (622)
Q Consensus 378 ~~~~~~~~~~~~~~~~-~~pn~~C~vC~~~~~~--l~i~~~~~TL~~li-~~ilk~~~~~~~~~I~~g~~~LY~~~~~ 451 (622)
+|++.. ++..++| .+|+.+|..-..|++| ++|+ .++||++|+ ++ ++++||+++.||++|.++||...++
T Consensus 355 ~nla~p---~~~~~~p~~~~~~~~~~~~~~t~Wdr~~v~-~~~t~~~~~~~~-~~~~~~~~v~~i~~g~~~ly~~~~~ 427 (435)
T cd01490 355 LNLALP---FFAFSEPIPAPKVKYAYDEEWTIWDRFEVK-GKQTLQELLIDY-FKEKYGLEVTMLSQGVSMLYSSFMP 427 (435)
T ss_pred hhccCC---ccccccCCCCCccccCCCCEEeeEeEEEEc-CCCcHHHHHHHH-HHHHhCCeEEEEEeCCeEEEeecCC
Confidence 999832 2333444 3444555122346665 5555 589999999 88 6999999999999999999998864
No 4
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-85 Score=727.10 Aligned_cols=454 Identities=30% Similarity=0.441 Sum_probs=359.2
Q ss_pred CccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccC---CCCCchhhhhccCCEEEEec
Q 006996 5 RQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGL 81 (622)
Q Consensus 5 GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i---~~~~~~~~f~~~~DlVi~al 81 (622)
+.|+|+++|||.||.||||||||||..|||++|+++|+++++.+||+++|++|..++ ++..|+++||.+.|+|.+||
T Consensus 458 ~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanAL 537 (1013)
T KOG2012|consen 458 NSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANAL 537 (1013)
T ss_pred CCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhh
Confidence 367999999999999999999999999999999999999999999999999999999 67789999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeeehhhhHHHHHH
Q 006996 82 DNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK 161 (622)
Q Consensus 82 Dn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~wa~~~~f~~ 161 (622)
||+.||+||++.|+.+.+||+++||.|++|++++++|+.|+.|....+||++++|+||++|||+.++|||+||++ .|+.
T Consensus 538 DNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~-eFEg 616 (1013)
T KOG2012|consen 538 DNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARD-EFEG 616 (1013)
T ss_pred cchhhhhhhhhhhhhhccchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HhCCCCcccc--ccc-C---------CCccc--chhhHHhhhh--cCChhhHHHHHHHhhhccccccHHHHhcC------
Q 006996 162 LFGDKNQEND--LNV-R---------SSDAS--SSAHAEDVFV--RRKDEDIDQYGRRIYDHVFGYNIEVASSN------ 219 (622)
Q Consensus 162 lF~~~~~~~d--l~~-~---------~~~~~--~~~~~~~~~~--~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~------ 219 (622)
+|.++.+..+ +.. . +.... .++.+.+.+. +.++.+|++||+..|+++|+++|.|||..
T Consensus 617 ~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~ 696 (1013)
T KOG2012|consen 617 LFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAK 696 (1013)
T ss_pred HhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccc
Confidence 9998655321 111 0 00000 2233333333 46899999999999999999999999985
Q ss_pred ----CcccCC-CCCCCcccCCCCCCc---------chhhhcccccccccccchhhhHHhhcCC---CCCCC--c------
Q 006996 220 ----EETWKN-RNRPKPIYSADVMPE---------NLTEQNGNVAKNCVVDTSSVSAMASLGL---KNPQD--T------ 274 (622)
Q Consensus 220 ----~~~W~~-rr~P~pl~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~~~~~~---~~~~~--~------ 274 (622)
.+||++ +|+|.||.|+...+. .++++++++.. +.+...-......... ...+. +
T Consensus 697 t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~-~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~ 775 (1013)
T KOG2012|consen 697 TSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPG-SQDREALAELLERVIVPEFEPKQKVKIVVEEAE 775 (1013)
T ss_pred cCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCc-ccCHHHhhhhHhhcCCCccccccCCeecccccc
Confidence 799987 888999999953332 35566666521 1000000000000000 00000 0
Q ss_pred -----cccccchHHHHHHHHHHHHhhh----hccCCccCCCCcHh--HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhccc
Q 006996 275 -----WTLLESSRIFLEALKLFFAKRE----KEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNI 343 (622)
Q Consensus 275 -----~s~~e~~~~f~~~~~~~~~~~~----~~~~~l~FDKDD~~--h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnI 343 (622)
-++.+.. -+..++.-+.+.. ..+.|+.|+||||. |||||+|||||||.||+||+++|+++|+|||+|
T Consensus 776 ~~~~~~s~d~~~--~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkI 853 (1013)
T KOG2012|consen 776 LAASSASVDDSA--AIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKI 853 (1013)
T ss_pred cccccccCCchH--HHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeE
Confidence 0111111 1222222222211 24789999999996 999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcC--cccceeeEeecccccceeecccCCCCCCCCcccCC-cccEEEEEcC-CCCCH
Q 006996 344 VHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCS-ETPLSLEINT-SRSKL 419 (622)
Q Consensus 344 IPAIATTnAiVAGl~vlE~~Kvl~~~--~~~~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~-~~~~~l~i~~-~~~TL 419 (622)
|||||||||+|+||+|+|+||++.|+ .+.|||+|+|++.. ++...+|.++...-|.-. .|++|-++.. +++||
T Consensus 854 IPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnLAlp---~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL 930 (1013)
T KOG2012|consen 854 IPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNLALP---FFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTL 930 (1013)
T ss_pred EEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhccccc---ceeecccCCCcceeeecccceeeeEEEEecCCCCH
Confidence 99999999999999999999999995 48999999999932 345566666333333333 6888765543 47999
Q ss_pred HHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCC
Q 006996 420 RDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPS 473 (622)
Q Consensus 420 ~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~ 473 (622)
++|+++ +++++|+++.||+.|..+||..+++ .+.++|+++..||+.
T Consensus 931 ~~~L~~-~~~~~gl~i~mls~G~~lly~~~~~-------k~~erl~~~v~elv~ 976 (1013)
T KOG2012|consen 931 REFLDH-LEEQHGLEITMLSQGVSLLYASFMP-------KHAERLPLRVTELVR 976 (1013)
T ss_pred HHHHHH-HhhhcCceEEEEeccceeehhhhhh-------HHHHhcCCcHHHHHH
Confidence 999999 5779999999999999999998875 467888999989853
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.2e-81 Score=658.27 Aligned_cols=294 Identities=61% Similarity=0.981 Sum_probs=280.0
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|+|+||.|||||||||+.+|||++||++|+++++++||+++|+++..++++..++.+||++||+||+|
T Consensus 18 Lal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a 97 (312)
T cd01489 18 LVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNA 97 (312)
T ss_pred HHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCCccchHHHHhcCCEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999998766778999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeeehhhhHHHHH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFA 160 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~wa~~~~f~ 160 (622)
+||+++|+++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|..+++++++|+|||+++|+.++|||+||++ +|.
T Consensus 98 ~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~p~~~~hci~~a~~-~f~ 176 (312)
T cd01489 98 LDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRSTPSQPIHCIVWAKS-LFF 176 (312)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCCCCCCEeehhHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999989999999999999999999999998 454
Q ss_pred HHhCCCCcccccccCCCcccchhhHHhhhhcCChhhHHHHHHHhhhccccccHHHHhcCCcccCCCCCCCcccCCCCCCc
Q 006996 161 KLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPE 240 (622)
Q Consensus 161 ~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~~~~W~~rr~P~pl~~~~~~~~ 240 (622)
+|+++|+++|++|+++++||+++++|.||.|+.
T Consensus 177 -------------------------------------------~~~~~f~~~i~~l~~~~~~w~~~~~p~p~~~~~---- 209 (312)
T cd01489 177 -------------------------------------------LFNKVFKDDIERLLSMEELWKTRKPPVPLSWKE---- 209 (312)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCC----
Confidence 578999999999999999999999999996642
Q ss_pred chhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCccCCCCcHhHHHHHHHHHH
Q 006996 241 NLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAAN 320 (622)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~l~FDKDD~~h~dFV~AaaN 320 (622)
++|||||++||+||+|+||
T Consensus 210 -------------------------------------------------------------~~fdkDd~~~~~~v~~~a~ 228 (312)
T cd01489 210 -------------------------------------------------------------LTFDKDDQDALDFVAAAAN 228 (312)
T ss_pred -------------------------------------------------------------cCcCCCCHHHHHHHHHHHH
Confidence 2699999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecc-cccceeecccCCCCCCCC
Q 006996 321 IRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEH-ITKKMLLMPVEPYEPNKS 399 (622)
Q Consensus 321 LRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~-~~~~~~~~~~~~~~pn~~ 399 (622)
|||++|||++.|+|++|+||||||||||||||||||++++|++|++++..+.+|++|+++. +.++++++|..|.+|||+
T Consensus 229 lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 308 (312)
T cd01489 229 LRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPNRRKRLLVPCKLDPPNPN 308 (312)
T ss_pred HHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccCCCCcEecCCCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999876 566789999999999999
Q ss_pred cccC
Q 006996 400 CYVC 403 (622)
Q Consensus 400 C~vC 403 (622)
|+||
T Consensus 309 c~~c 312 (312)
T cd01489 309 CYVC 312 (312)
T ss_pred CCCC
Confidence 9999
No 6
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-63 Score=503.91 Aligned_cols=349 Identities=31% Similarity=0.502 Sum_probs=298.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|..+|.+.+++||||||++|||||||||+++|||++||++||+.+.++.|++.|.+|..+|++ ++.+|+++|++||++
T Consensus 59 Lal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd--~~~~FYk~F~~iicG 136 (422)
T KOG2015|consen 59 LALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQD--KPISFYKRFDLIICG 136 (422)
T ss_pred HHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchhc--CCHHHHhhhceEEec
Confidence 346899999999999999999999999999999999999999999999999999999999975 668999999999999
Q ss_pred cCCHHHHHHHHHHHHH---cC-------CCEEEeccccccceEEEEeCCCCccccccCC--CCCCCCCcccccCCCCCce
Q 006996 81 LDNLDARRHVNRLCLA---AD-------VPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITSTPSKFV 148 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~---~~-------iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~~~P~CTi~~~P~~~~ 148 (622)
||+++||+|||.+.++ .| +|||++|+.||+||+++|.||.|+|++|..+ |++.+||+|||.|+|..|+
T Consensus 137 LDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpE 216 (422)
T KOG2015|consen 137 LDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPE 216 (422)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCch
Confidence 9999999999999654 22 7999999999999999999999999999965 6667899999999999999
Q ss_pred eeehhhhHHHHHHHhCCCCcccccccCCCcccchhhHHhhhhcCChhhHHHHHHHhhhccccccHHHHhcCCcccCCCCC
Q 006996 149 HCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNR 228 (622)
Q Consensus 149 hcI~wa~~~~f~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~~~~W~~rr~ 228 (622)
|||+|++-+.|..++-.
T Consensus 217 HciEyv~liqwpe~~~~--------------------------------------------------------------- 233 (422)
T KOG2015|consen 217 HCIEYVKLIQWPELNPF--------------------------------------------------------------- 233 (422)
T ss_pred HhhhhhhhhcchhhCcc---------------------------------------------------------------
Confidence 99999987544432210
Q ss_pred CCcccCCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCccCCCCc
Q 006996 229 PKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDD 308 (622)
Q Consensus 229 P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~l~FDKDD 308 (622)
...|+.||
T Consensus 234 ------------------------------------------------------------------------g~~~~gdd 241 (422)
T KOG2015|consen 234 ------------------------------------------------------------------------GVPLDGDD 241 (422)
T ss_pred ------------------------------------------------------------------------CCCCCCCC
Confidence 01489999
Q ss_pred HhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecccccceee
Q 006996 309 QLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLL 388 (622)
Q Consensus 309 ~~h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~~~~~~~ 388 (622)
+.||+||+--+|.||..|+|+.++++.+.++...||||+|||||+||+.|+.|++|++..... +-+.|++..- ....+
T Consensus 242 ~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~-~~~Nym~~n~-~eG~y 319 (422)
T KOG2015|consen 242 PEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDD-PLDNYMNYNA-EEGIY 319 (422)
T ss_pred HHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcch-hhhhheeeec-cccee
Confidence 999999999999999999999999999999999999999999999999999999999997532 2333443331 12234
Q ss_pred cccCCCCCCCCcccCCcccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeec-CcEEEeeCCCccHHHHHHHhhhhhcc
Q 006996 389 MPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHG-SNLLYEVGDDLDEVEVANYAANLEKV 467 (622)
Q Consensus 389 ~~~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g-~~~LY~~~~~l~~~~~~~~~~nl~k~ 467 (622)
+.....+..++|.||+.....+.+.. ..||++++++ +.+.|+|..|.+... .+.||..+.+ ..++.+++||.++
T Consensus 320 tytf~~er~~nC~vCS~~~~~~~isp-t~tl~~vl~~-ls~~~~lk~p~~tt~~~~~ly~~~~~---~~e~~t~~nl~~~ 394 (422)
T KOG2015|consen 320 TYTFLLERDKNCPVCSNLVQNYDISP-TVTLEDVLNH-LSKSFQLKSPALTTAAGRTLYLSSVP---SIEEATRKNLSQS 394 (422)
T ss_pred EEEeeeccCCCCccccCCCcccccCC-cccHHHHHHH-hhhhhccCCchhhhhhcceEeecCCc---HHHHHhhhhhhhh
Confidence 44555677899999998777777774 8899999998 578999999998764 4789988876 2335678999999
Q ss_pred cccCCCCCCCCcEEEEeeCCCCeEEEEEEE
Q 006996 468 LSQLPSPVTNGTMLTVEDLQQELTCNINIK 497 (622)
Q Consensus 468 L~el~~~i~~g~~l~v~D~~~~~~~~l~i~ 497 (622)
|.+| .+|..|.|+|....-.+.+.++
T Consensus 395 l~~l----~dg~~l~vtd~~~~~~l~~~l~ 420 (422)
T KOG2015|consen 395 LKEL----SDGQELVVTDKTLSTALTLQLR 420 (422)
T ss_pred HHHh----cCCceEEEecccCCcceeEEEe
Confidence 9987 5899999999988777766664
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=3.8e-63 Score=500.96 Aligned_cols=216 Identities=44% Similarity=0.702 Sum_probs=204.6
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCC-CCchhhhhccCCEEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFFKQFNVVLN 79 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~-~~~~~~f~~~~DlVi~ 79 (622)
|++.|+|+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++.+ ..++.+|+++||+||+
T Consensus 18 La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~ 97 (234)
T cd01484 18 LALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVN 97 (234)
T ss_pred HHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEE
Confidence 457899999999999999999999999999999999999999999999999999999999954 3566789999999999
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeeehhhhHHHH
Q 006996 80 GLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLF 159 (622)
Q Consensus 80 alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~wa~~~~f 159 (622)
|+||+++|+++|++|+.+++|+|++|+.|+.|+++++.|+.|+||+|.+.++++++|+|||+++|+.|+|||+||+++ |
T Consensus 98 a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~~P~~~~hci~~a~~~-~ 176 (234)
T cd01484 98 ALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIASMPRLPEHCIEWARML-Q 176 (234)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCCCCCCchHHHHHHHHH-H
Confidence 999999999999999999999999999999999999999999999999988888999999999999999999999982 1
Q ss_pred HHHhCCCCcccccccCCCcccchhhHHhhhhcCChhhHHHHHHHhhhccccccHHHHhcCCcccCCCCCCCcccCCCCCC
Q 006996 160 AKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMP 239 (622)
Q Consensus 160 ~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~~~~W~~rr~P~pl~~~~~~~ 239 (622)
T Consensus 177 -------------------------------------------------------------------------------- 176 (234)
T cd01484 177 -------------------------------------------------------------------------------- 176 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCccCCCCcHhHHHHHHHHH
Q 006996 240 ENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAA 319 (622)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~l~FDKDD~~h~dFV~Aaa 319 (622)
| ||+.||+||+++|
T Consensus 177 ----------------------------------------------------------------~--d~~~~~~~i~~~a 190 (234)
T cd01484 177 ----------------------------------------------------------------W--DDPEHIQFIFQAS 190 (234)
T ss_pred ----------------------------------------------------------------h--CCHHHHHHHHHHH
Confidence 1 5566999999999
Q ss_pred HHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHH
Q 006996 320 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAI 363 (622)
Q Consensus 320 NLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~ 363 (622)
|+||++|||++.|++++|+||||||||||||||||||++|+|++
T Consensus 191 ~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 191 NERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999985
No 8
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=8e-63 Score=511.59 Aligned_cols=264 Identities=37% Similarity=0.572 Sum_probs=231.1
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++.+ ++.+||++||+||+|
T Consensus 18 Lal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~--~~~~f~~~fdvVi~a 95 (291)
T cd01488 18 LALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD--KDEEFYRQFNIIICG 95 (291)
T ss_pred HHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc--hhHHHhcCCCEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999975 457999999999999
Q ss_pred cCCHHHHHHHHHHHHHc--------CCCEEEeccccccceEEEEeCCCCccccccCC--CCCCCCCcccccCCCCCceee
Q 006996 81 LDNLDARRHVNRLCLAA--------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITSTPSKFVHC 150 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~--------~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~~~P~CTi~~~P~~~~hc 150 (622)
+||+++|+++|++|... ++|||++|+.|+.||++++.|+.|+||+|.++ |++.++|+|||+++|+.|+||
T Consensus 96 lDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~p~Cti~~~P~~~~hc 175 (291)
T cd01488 96 LDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHC 175 (291)
T ss_pred CCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCCCcccccCCCCCcchh
Confidence 99999999999998764 49999999999999999999999999999976 556789999999999999999
Q ss_pred ehhhhHHHHHHHhCCCCcccccccCCCcccchhhHHhhhhcCChhhHHHHHHHhhhccccccHHHHhcCCcccCCCCCCC
Q 006996 151 IVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNRNRPK 230 (622)
Q Consensus 151 I~wa~~~~f~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~~~~W~~rr~P~ 230 (622)
|+||+.++|.. .+ |
T Consensus 176 i~~a~~~~~~~----------------------------------------------------------------~~-~- 189 (291)
T cd01488 176 IEYASLIQWPK----------------------------------------------------------------EF-P- 189 (291)
T ss_pred eeeeeeeeccc----------------------------------------------------------------cc-C-
Confidence 99999842211 00 0
Q ss_pred cccCCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCccCCCCcHh
Q 006996 231 PIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDKDDQL 310 (622)
Q Consensus 231 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~l~FDKDD~~ 310 (622)
...||+||+.
T Consensus 190 ----------------------------------------------------------------------~~~~~~d~~~ 199 (291)
T cd01488 190 ----------------------------------------------------------------------FVPLDGDDPE 199 (291)
T ss_pred ----------------------------------------------------------------------CCcCCCCCHH
Confidence 0159999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecccccceeecc
Q 006996 311 AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMP 390 (622)
Q Consensus 311 h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~~~~~~~~~ 390 (622)
||+||+..|+.||..|||++.+++.+++|+||||||||||||||||+++.|++|++++......| |+.... ....++.
T Consensus 200 ~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n-~~~~~g-~~g~~~~ 277 (291)
T cd01488 200 HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNN-YLMYNG-VDGCYTY 277 (291)
T ss_pred HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCc-eEEEec-CCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999987543332 222221 1233444
Q ss_pred cCCCCCCCCcccCC
Q 006996 391 VEPYEPNKSCYVCS 404 (622)
Q Consensus 391 ~~~~~pn~~C~vC~ 404 (622)
....+++|.|.+|+
T Consensus 278 ~~~~~~~~~c~~c~ 291 (291)
T cd01488 278 TFEHERKEDCPVCS 291 (291)
T ss_pred EEEEeeCCCCCCCC
Confidence 55568899999996
No 9
>PRK08223 hypothetical protein; Validated
Probab=99.96 E-value=1.2e-28 Score=255.23 Aligned_cols=128 Identities=24% Similarity=0.315 Sum_probs=120.6
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|+||.|||||||+|+.+|||++||++|+++++++||.++|+++...+++.+. .+|++++|+||+|
T Consensus 46 LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~-~~ll~~~DlVvD~ 124 (287)
T PRK08223 46 LARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENA-DAFLDGVDVYVDG 124 (287)
T ss_pred HHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCH-HHHHhCCCEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999986553 6899999999999
Q ss_pred cCCH--HHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCC
Q 006996 81 LDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 130 (622)
Q Consensus 81 lDn~--~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~ 130 (622)
+||+ .+|+++|++|+.+++|+|.+++.|+.||+.++.|+ ++||+|.++.
T Consensus 125 ~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~~ 175 (287)
T PRK08223 125 LDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFDL 175 (287)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcCC
Confidence 9996 89999999999999999999999999999999986 8999999753
No 10
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.95 E-value=2.2e-28 Score=242.93 Aligned_cols=144 Identities=26% Similarity=0.472 Sum_probs=131.1
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||||||||+.+|||++||++++++++++||+++|+++...+...+. .++++++|+||+|
T Consensus 40 La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~-~~~~~~~D~Vi~~ 118 (202)
T TIGR02356 40 LAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENL-ELLINNVDLVLDC 118 (202)
T ss_pred HHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHH-HHHHhCCCEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999998865433 4789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCC-CCccccccCCCCCCCCCcccccCCCC
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKPAPKTYPVCTITSTPS 145 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~-~t~Cy~C~~~~~~~~~P~CTi~~~P~ 145 (622)
+||+++|.++|++|+++++|+|.+|+.|+.|++.++.|+ .++||+|.++..+...|.|+..+...
T Consensus 119 ~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~~~~~~~~~~~~~~~~ 184 (202)
T TIGR02356 119 TDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPDIADTGPSCATAGVIG 184 (202)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCCCcccCCCCccCCccc
Confidence 999999999999999999999999999999999999998 79999999877555678887765543
No 11
>PRK07411 hypothetical protein; Validated
Probab=99.95 E-value=6.3e-28 Score=261.65 Aligned_cols=163 Identities=23% Similarity=0.341 Sum_probs=139.8
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|+|+.|||||||||+.+|||++||++|+++|+++||.++|+++..+++..+ ..+++.++|+||+|
T Consensus 57 La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~-~~~~~~~~D~Vvd~ 135 (390)
T PRK07411 57 LAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSEN-ALDILAPYDVVVDG 135 (390)
T ss_pred HHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHh-HHHHHhCCCEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999997643 35889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCC--CCCCCCcccccCCCCCceeeeh-h-hhH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP--APKTYPVCTITSTPSKFVHCIV-W-AKD 156 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~--~~~~~P~CTi~~~P~~~~hcI~-w-a~~ 156 (622)
+||+++|.++|++|+.+++|+|.+++.|+.||+.++.|+.++||+|+++. ++...|.|...+........|. + |.+
T Consensus 136 ~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~~~gvlg~~~~~~g~~~a~e 215 (390)
T PRK07411 136 TDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCAEGGVLGILPGIIGVIQATE 215 (390)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCccCCcCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999863 3345678887666554333332 2 333
Q ss_pred HHHHHHhCC
Q 006996 157 LLFAKLFGD 165 (622)
Q Consensus 157 ~~f~~lF~~ 165 (622)
..+.+-|.
T Consensus 216 -aik~l~g~ 223 (390)
T PRK07411 216 -TIKIILGA 223 (390)
T ss_pred -HHHHHcCC
Confidence 56666653
No 12
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.95 E-value=1e-27 Score=257.14 Aligned_cols=163 Identities=26% Similarity=0.373 Sum_probs=140.7
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|+|+.|||||||||+..|||++||++|+++|+++||.++|+++..+++..+ ..++++++|+||+|
T Consensus 47 La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~-~~~~~~~~DvVvd~ 125 (355)
T PRK05597 47 LAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTWSN-ALDELRDADVILDG 125 (355)
T ss_pred HHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCHHH-HHHHHhCCCEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999997543 35789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCC--CCCCCcccccCCCCCceeeeh-h-hhH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA--PKTYPVCTITSTPSKFVHCIV-W-AKD 156 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~--~~~~P~CTi~~~P~~~~hcI~-w-a~~ 156 (622)
+||+.+|.++|++|+++++|+|.+++.|+.||+.++.|+.++||+|.++.. +...|.|+..+........|. + |.+
T Consensus 126 ~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~gv~g~~~~~~g~~~a~e 205 (355)
T PRK05597 126 SDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQAGVLGPVVGVVGSAMAME 205 (355)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCccccCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997632 346788987776554433332 2 344
Q ss_pred HHHHHHhCC
Q 006996 157 LLFAKLFGD 165 (622)
Q Consensus 157 ~~f~~lF~~ 165 (622)
..+.+.|.
T Consensus 206 -~ik~l~g~ 213 (355)
T PRK05597 206 -ALKLITGV 213 (355)
T ss_pred -HHHHHhCC
Confidence 56667663
No 13
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.95 E-value=1.7e-27 Score=243.26 Aligned_cols=140 Identities=29% Similarity=0.498 Sum_probs=125.6
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|+|+.|||||||||+.+|||++||++|+++|+++||+++|+++...+++.+ ..+++++||+||+|
T Consensus 51 La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~-~~~~~~~~DiVi~~ 129 (245)
T PRK05690 51 LAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDE-LAALIAGHDLVLDC 129 (245)
T ss_pred HHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHH-HHHHHhcCCEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999987543 35789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCC-CccccccCCCCCCCCCccccc
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKPAPKTYPVCTIT 141 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~-t~Cy~C~~~~~~~~~P~CTi~ 141 (622)
+||+++|.++|++|+++++|+|.+++.|+.|++.++.|+. ++||+|.++..+.....|.-.
T Consensus 130 ~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~~~~~~~~~~~~ 191 (245)
T PRK05690 130 TDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGENALTCVEA 191 (245)
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCCCCceeeeccCCCCCCCCCcccC
Confidence 9999999999999999999999999999999999999875 899999976544333356433
No 14
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.94 E-value=3.9e-27 Score=237.97 Aligned_cols=163 Identities=29% Similarity=0.475 Sum_probs=136.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||||||||+.+|||++||++++++++++||+++|+++...++..+ ..+++.++|+||+|
T Consensus 40 La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~-~~~~~~~~DvVi~~ 118 (228)
T cd00757 40 LAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAEN-AEELIAGYDLVLDC 118 (228)
T ss_pred HHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCHHH-HHHHHhCCCEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999886433 35789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCC-CCCcccccCCCCCceeeeh--hhhHH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPK-TYPVCTITSTPSKFVHCIV--WAKDL 157 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~-~~P~CTi~~~P~~~~hcI~--wa~~~ 157 (622)
+|++.+|.++|++|+.+++|+|++|+.|+.|++.++.|+.++||.|.+...+. ..+.|.....+......+. .|.+
T Consensus 119 ~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e- 197 (228)
T cd00757 119 TDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALE- 197 (228)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCCCccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999999998764332 2355655444433333332 3343
Q ss_pred HHHHHhCC
Q 006996 158 LFAKLFGD 165 (622)
Q Consensus 158 ~f~~lF~~ 165 (622)
..+.+.|.
T Consensus 198 ~i~~l~g~ 205 (228)
T cd00757 198 ALKILLGI 205 (228)
T ss_pred HHHHHhCC
Confidence 55666654
No 15
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.94 E-value=7.3e-27 Score=237.88 Aligned_cols=161 Identities=27% Similarity=0.490 Sum_probs=131.4
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||||||||+..|||++||++|+++++++||+++|+++...++..+ ..+++.++|+||+|
T Consensus 43 La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~-~~~~~~~~DlVvd~ 121 (240)
T TIGR02355 43 LAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAE-LAALIAEHDIVVDC 121 (240)
T ss_pred HHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHH-HHHHhhcCCEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999887543 35789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEe-CCCCccccccCCCCCCCCCcccccCCCCC---ceeeehhhhH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-KGKTECYECQPKPAPKTYPVCTITSTPSK---FVHCIVWAKD 156 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~-p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~---~~hcI~wa~~ 156 (622)
+||+++|.++|++|+++++|+|.+++.|+.|++.++. +..++||+|..+..+...+.|...+.... .+.+++ |.+
T Consensus 122 ~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~~~~~~~~~~~~~gv~~p~~~~~~~~~-a~e 200 (240)
T TIGR02355 122 TDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSRLFGENALSCVEAGVMAPVVGVVGSLQ-AME 200 (240)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCCCCCccccccccCCCCCCCccccCccchHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999998775 44679999986433322334543333222 233333 333
Q ss_pred HHHHHHhC
Q 006996 157 LLFAKLFG 164 (622)
Q Consensus 157 ~~f~~lF~ 164 (622)
..+.+.|
T Consensus 201 -~ik~l~g 207 (240)
T TIGR02355 201 -AIKVLAG 207 (240)
T ss_pred -HHHHHhC
Confidence 5666665
No 16
>PRK08328 hypothetical protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=233.97 Aligned_cols=129 Identities=27% Similarity=0.371 Sum_probs=121.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCc-hHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLN 79 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk-~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~ 79 (622)
|++.|+|+|+|+|.|.|+.|||||||||+.+|||+ +|+++|+++++++||+++|+++...+++.+ ..++++++|+||+
T Consensus 46 La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~-~~~~l~~~D~Vid 124 (231)
T PRK08328 46 LAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEEN-IDEVLKGVDVIVD 124 (231)
T ss_pred HHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCCHHH-HHHHHhcCCEEEE
Confidence 45789999999999999999999999999999999 699999999999999999999998886544 3578999999999
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCC
Q 006996 80 GLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 130 (622)
Q Consensus 80 alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~ 130 (622)
|+||+++|.++|++|+++++|+|.+|+.|+.|++.++.|+.|+||+|.++.
T Consensus 125 ~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~ 175 (231)
T PRK08328 125 CLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPK 175 (231)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCC
Confidence 999999999999999999999999999999999999999999999999854
No 17
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.94 E-value=2.5e-26 Score=249.44 Aligned_cols=163 Identities=26% Similarity=0.380 Sum_probs=135.7
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++|+++||+++|+++..+++..+ ..+++++||+||+|
T Consensus 61 La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~~D~Vvd~ 139 (392)
T PRK07878 61 LAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSN-AVELFSQYDLILDG 139 (392)
T ss_pred HHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCChhH-HHHHHhcCCEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999997543 36889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeC----CCCccccccCCCC--CCCCCcccccCCCCCceeeeh-h
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK----GKTECYECQPKPA--PKTYPVCTITSTPSKFVHCIV-W 153 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p----~~t~Cy~C~~~~~--~~~~P~CTi~~~P~~~~hcI~-w 153 (622)
+||+.+|.++|++|+.+++|||.+++.|+.||+.++.+ +.++||+|.++.. +...|.|.-.+........|. +
T Consensus 140 ~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~g~~ 219 (392)
T PRK07878 140 TDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAEGGVLGVLCASIGSI 219 (392)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCccCCccchHHHHHHHH
Confidence 99999999999999999999999999999999998874 3689999997533 345678876555443322221 2
Q ss_pred hhHHHHHHHhC
Q 006996 154 AKDLLFAKLFG 164 (622)
Q Consensus 154 a~~~~f~~lF~ 164 (622)
+.....+.+-|
T Consensus 220 ~a~e~ik~l~g 230 (392)
T PRK07878 220 MGTEAIKLITG 230 (392)
T ss_pred HHHHHHHHHhC
Confidence 22225555555
No 18
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.93 E-value=3.3e-26 Score=246.47 Aligned_cols=162 Identities=24% Similarity=0.345 Sum_probs=136.7
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||||||||+.+|||++||++|+++++++||+++|+++..+++..+ ..++++++|+||+|
T Consensus 60 La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~~DlVid~ 138 (370)
T PRK05600 60 LASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAEN-AVELLNGVDLVLDG 138 (370)
T ss_pred HHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHH-HHHHHhCCCEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999997543 35789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCC---CccccccCCCC--CCCCCcccccCCCCCc---eeeeh
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK---TECYECQPKPA--PKTYPVCTITSTPSKF---VHCIV 152 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~---t~Cy~C~~~~~--~~~~P~CTi~~~P~~~---~hcI~ 152 (622)
+||+++|.++|++|+.+++|+|.+++.|+.||+.++.|+. ++||+|.++.. ....|.|...+..... +.+++
T Consensus 139 ~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~gvlg~~~~~ig~~~ 218 (370)
T PRK05600 139 SDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCATAGVLGATTAVIGALM 218 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCccCCcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999998763 78999998632 3456778665544432 22222
Q ss_pred hhhHHHHHHHhCC
Q 006996 153 WAKDLLFAKLFGD 165 (622)
Q Consensus 153 wa~~~~f~~lF~~ 165 (622)
|.+ ..+.+.|-
T Consensus 219 -a~e-aik~l~g~ 229 (370)
T PRK05600 219 -ATE-AIKFLTGI 229 (370)
T ss_pred -HHH-HHHHHhCC
Confidence 343 56666653
No 19
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.93 E-value=5.1e-26 Score=233.18 Aligned_cols=144 Identities=37% Similarity=0.621 Sum_probs=130.3
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|+|+++|+|.|+|++|||+|||+|+..|||++|+++|++.++++||.++++++...++..+. ..++.++|+|++|
T Consensus 49 la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~-~~~~~~~d~v~d~ 127 (254)
T COG0476 49 LALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENA-EELIAQFDVVLDC 127 (254)
T ss_pred HHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCCeEEEeecccChhhH-HHHhccCCEEEEC
Confidence 357899999999999999999999999999999999999999999999999999999999987666 7999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCC-CCccccccCCCCCC--CCC-cccccCCCC
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKPAPK--TYP-VCTITSTPS 145 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~-~t~Cy~C~~~~~~~--~~P-~CTi~~~P~ 145 (622)
+||+.+|+.+|++|+.+++||+++|+.|+.|+++++.|+ .++||+|.++..+. ..+ .|.-.....
T Consensus 128 ~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~~~gv~~ 196 (254)
T COG0476 128 TDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCDEAGVLG 196 (254)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecCCCCCcccccCCCCCCccccccccccCCccc
Confidence 999999999999999999999999999999999999999 59999999875443 333 265555544
No 20
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.93 E-value=4.8e-26 Score=242.54 Aligned_cols=144 Identities=24% Similarity=0.380 Sum_probs=128.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccC--chHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVL 78 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIG--k~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi 78 (622)
|+++|||+|+|||.|.||.|||+||+||+++|+| ++||++|+++++++||+++|+++...++..+ ..++++++|+||
T Consensus 43 La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~-~~~~~~~~DlVi 121 (338)
T PRK12475 43 LVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE-LEELVKEVDLII 121 (338)
T ss_pred HHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHH-HHHHhcCCCEEE
Confidence 4678999999999999999999999999999985 8999999999999999999999998886443 357899999999
Q ss_pred EecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCC
Q 006996 79 NGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPS 145 (622)
Q Consensus 79 ~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~ 145 (622)
+|+||+++|.++|++|+++++|+|.+|+.|+.|++.++.|+.|+||+|+++..|...+.|...+...
T Consensus 122 d~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~~~~c~~~Gvl~ 188 (338)
T PRK12475 122 DATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVGGATCDTAGIIQ 188 (338)
T ss_pred EcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcCCCCCCCCCCccCCcCc
Confidence 9999999999999999999999999999999999999999999999999865443445676655544
No 21
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.93 E-value=8.9e-26 Score=234.57 Aligned_cols=147 Identities=16% Similarity=0.350 Sum_probs=133.5
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|.|+.|||+|||||+++|||++||++++++|+++||.++|++++..+ +.+++.+||+||+|
T Consensus 38 LalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~~-----~~~~l~~fdvVV~~ 112 (286)
T cd01491 38 LILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGPL-----TTDELLKFQVVVLT 112 (286)
T ss_pred HHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEeccC-----CHHHHhcCCEEEEe
Confidence 4688999999999999999999999999999999999999999999999999999998774 35789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCC--CCCCCCCcccccCCCCCceeeehhhh
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAK 155 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~~~P~CTi~~~P~~~~hcI~wa~ 155 (622)
.|++.+|.++|++|+++++|+|.+++.|+.|++++. .++||.|... +.|.++++|+|.+.+...+||+.=.+
T Consensus 113 ~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~d---fg~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~ 186 (286)
T cd01491 113 DASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCD---FGDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETR 186 (286)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEec---CCCeEEEeCCCCCcCCccceeeeecCCceEEEEECCcc
Confidence 999999999999999999999999999999999873 3588888743 35678999999999999999985433
No 22
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.92 E-value=2.4e-25 Score=240.56 Aligned_cols=163 Identities=26% Similarity=0.430 Sum_probs=138.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||||||||+..|||++||++++++++++||.++|+++...++..+. .++++++|+||+|
T Consensus 154 La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~-~~~~~~~D~Vv~~ 232 (376)
T PRK08762 154 LAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNV-EALLQDVDVVVDG 232 (376)
T ss_pred HHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHH-HHHHhCCCEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999988865433 5788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCC----CccccccCCCC--CCCCCcccccCCCCCceeeeh-h
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK----TECYECQPKPA--PKTYPVCTITSTPSKFVHCIV-W 153 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~----t~Cy~C~~~~~--~~~~P~CTi~~~P~~~~hcI~-w 153 (622)
+||+.+|.++|++|+++++|+|.+|+.|+.|++.++.|+. ++||+|.++.. +...|.|...+.......-+. +
T Consensus 233 ~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~~gv~g~~~~~~~~~ 312 (376)
T PRK08762 233 ADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAEAGVLGVLPGVIGLL 312 (376)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCccCCcchhhHHHHHHH
Confidence 9999999999999999999999999999999999999876 89999997532 334678887766544322221 2
Q ss_pred -hhHHHHHHHhCC
Q 006996 154 -AKDLLFAKLFGD 165 (622)
Q Consensus 154 -a~~~~f~~lF~~ 165 (622)
|.+ .++.+.|.
T Consensus 313 ~a~e-~~k~l~g~ 324 (376)
T PRK08762 313 QATE-AIKLLLGI 324 (376)
T ss_pred HHHH-HHHHHhCC
Confidence 344 67777763
No 23
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.92 E-value=2.4e-25 Score=237.33 Aligned_cols=143 Identities=23% Similarity=0.354 Sum_probs=128.0
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccC--chHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVL 78 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIG--k~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi 78 (622)
|+++|+|+|+|||.|.|+.|||+|||||+.+||| ++|+++|+++++++||.++|+++..+++..+. .++++++|+||
T Consensus 43 La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~-~~~~~~~DlVi 121 (339)
T PRK07688 43 LVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL-EELVTGVDLII 121 (339)
T ss_pred HHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH-HHHHcCCCEEE
Confidence 4578999999999999999999999999999995 59999999999999999999999998875433 57899999999
Q ss_pred EecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCC
Q 006996 79 NGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTP 144 (622)
Q Consensus 79 ~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P 144 (622)
+|+||+.+|.++|++|+++++|+|.+++.|+.|++.++.|+.++||+|+++..|...+.|.-.+..
T Consensus 122 d~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~~~~c~~~gv~ 187 (339)
T PRK07688 122 DATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQSIPLGGATCDTAGII 187 (339)
T ss_pred EcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecCCCCCCCCCCccCCcc
Confidence 999999999999999999999999999999999999999999999999986555445677554433
No 24
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.92 E-value=1.4e-25 Score=231.42 Aligned_cols=146 Identities=24% Similarity=0.398 Sum_probs=131.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|.|||.|.||.|||+||.++++..+|++||+.|+..++++||+++|..|...+...+. .+++++||+|++|
T Consensus 85 LaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa-~~Ii~~YdvVlDC 163 (427)
T KOG2017|consen 85 LAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA-FDIIKQYDVVLDC 163 (427)
T ss_pred HHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH-HHHhhccceEEEc
Confidence 357899999999999999999999999999999999999999999999999999999999976553 6899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCC--CCCCCcccccCCCCCc
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA--PKTYPVCTITSTPSKF 147 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~--~~~~P~CTi~~~P~~~ 147 (622)
+||+.+|+.|++.|+..|+|||.+...++.||..+..-..+|||+|.++.+ |.....|.=.+.....
T Consensus 164 TDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~dgGVlGpv 232 (427)
T KOG2017|consen 164 TDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCADGGVLGPV 232 (427)
T ss_pred CCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceeeecCCCCcChHHhcccccCceeecc
Confidence 999999999999999999999999999999999999778899999998643 3467777655554433
No 25
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.91 E-value=1.6e-24 Score=220.38 Aligned_cols=148 Identities=24% Similarity=0.300 Sum_probs=125.7
Q ss_pred EEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEecCCHHHH
Q 006996 8 EAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDAR 87 (622)
Q Consensus 8 ~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~alDn~~aR 87 (622)
+|+|+|+|+|+.|||||| +|+..|||++||+++++++.+++ +++|+++..++.. ..++.++|+||+|+||+++|
T Consensus 47 ~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~-~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR 120 (244)
T TIGR03736 47 AVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM-GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAAR 120 (244)
T ss_pred EEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc-CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHH
Confidence 999999999999999999 58889999999999999999998 8999999998865 24567899999999999999
Q ss_pred HHHHHHHHH--c-CCCEEEecc--------ccc-----cceEEEEeCCCCccccccCCC---CCCCCCcccccCCCCCce
Q 006996 88 RHVNRLCLA--A-DVPLVESGT--------TGF-----LGQVTVHVKGKTECYECQPKP---APKTYPVCTITSTPSKFV 148 (622)
Q Consensus 88 ~~vn~~c~~--~-~iPlI~sGt--------~G~-----~G~v~vi~p~~t~Cy~C~~~~---~~~~~P~CTi~~~P~~~~ 148 (622)
.++++.|.+ + .+||+++|+ .|. +|+.++++|+.|+||.|..++ ++.+.|+||+...... .
T Consensus 121 ~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~-Q 199 (244)
T TIGR03736 121 LAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAK-Q 199 (244)
T ss_pred HHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhcC-c
Confidence 999999988 3 489999999 455 677788899999999999877 5678999999875433 2
Q ss_pred ee------ehhhhHHHHHHH
Q 006996 149 HC------IVWAKDLLFAKL 162 (622)
Q Consensus 149 hc------I~wa~~~~f~~l 162 (622)
++ .++|..++|+.+
T Consensus 200 ~l~iN~~~a~~~~~~L~~lf 219 (244)
T TIGR03736 200 SLFINQAIAVFAMNLLWKLF 219 (244)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 22 346777666543
No 26
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.90 E-value=7.3e-24 Score=237.21 Aligned_cols=163 Identities=23% Similarity=0.297 Sum_probs=130.5
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCcccc---CchHHHHHHHHHHhhCCCCeEEEEeccC-------CCC------
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKFRPQMSITAHHANV-------KDP------ 64 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dI---Gk~KaevAa~~l~~~NP~v~I~a~~~~i-------~~~------ 64 (622)
|++.|||+|+|||.|+|+.||||||+||+.+|+ |++||++|+++|+++||+++|+++..+| ++.
T Consensus 357 La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~ 436 (664)
T TIGR01381 357 LIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELE 436 (664)
T ss_pred HHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhcc
Confidence 457899999999999999999999999999999 9999999999999999999999999885 321
Q ss_pred ---CchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEe------------------CCCCcc
Q 006996 65 ---KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV------------------KGKTEC 123 (622)
Q Consensus 65 ---~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~------------------p~~t~C 123 (622)
....++++++|+|++|+||+++|..+|.+|..+++|+|.++ .||.|++.+.. +...+|
T Consensus 437 ~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gC 515 (664)
T TIGR01381 437 KDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGC 515 (664)
T ss_pred ccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccceEEEEEecccccccccccccccccCCCCCCc
Confidence 11246899999999999999999999999999999999986 89999988761 125789
Q ss_pred cccc---CCCCCCCC----CcccccCCCCCceeeehhhhHHHHHHHhCCC
Q 006996 124 YECQ---PKPAPKTY----PVCTITSTPSKFVHCIVWAKDLLFAKLFGDK 166 (622)
Q Consensus 124 y~C~---~~~~~~~~----P~CTi~~~P~~~~hcI~wa~~~~f~~lF~~~ 166 (622)
|.|. .+..+... ..||+.. |..-.-.-.-|.+ ++..+..++
T Consensus 516 YfC~Dv~aP~~s~~~rtlDqqCtVtr-Pgv~~ias~~AvE-ll~~llqhp 563 (664)
T TIGR01381 516 YFCNDVTAPGDSTTDRTLDQQCTVTR-PGTAMIASGLAVE-LLVSVLQHP 563 (664)
T ss_pred cccCCCCCCCcccccccccccceEec-chHHHHHHHHHHH-HHHHHhcCC
Confidence 9999 33222223 6899533 4332222235666 677666543
No 27
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=99.89 E-value=1.8e-23 Score=207.12 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=107.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|.|+.|||+|||||+.+|||++||++++++|+++||+++|+++...+++ ...+|+++||+||+|
T Consensus 40 La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~--~~~~~~~~~dvVi~~ 117 (197)
T cd01492 40 LVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISE--KPEEFFSQFDVVVAT 117 (197)
T ss_pred HHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCccc--cHHHHHhCCCEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999998873 357899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEE
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH 116 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi 116 (622)
.|+..+|.++|++|+++++|+|.+|+.|+.|++.+.
T Consensus 118 ~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d 153 (197)
T cd01492 118 ELSRAELVKINELCRKLGVKFYATGVHGLFGFVFAD 153 (197)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEe
Confidence 999999999999999999999999999999998754
No 28
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.89 E-value=8.6e-24 Score=174.19 Aligned_cols=67 Identities=52% Similarity=0.681 Sum_probs=56.4
Q ss_pred cCCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcC
Q 006996 303 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD 369 (622)
Q Consensus 303 ~FDKDD~~h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~ 369 (622)
+||+||+.|++||+|+|||||++|||++.|++++++++|+||||++||||||||++|+|++|+++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999864
No 29
>PRK14851 hypothetical protein; Provisional
Probab=99.89 E-value=1.6e-23 Score=239.86 Aligned_cols=129 Identities=25% Similarity=0.374 Sum_probs=120.5
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|+|+|++|||||||+|+.+|||++|+++++++++++||.++|++++..+++.+. .+|+.++|+||+|
T Consensus 62 Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~-~~~l~~~DvVid~ 140 (679)
T PRK14851 62 MVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNM-DAFLDGVDVVLDG 140 (679)
T ss_pred HHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCChHHH-HHHHhCCCEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999976543 5899999999999
Q ss_pred cCC--HHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCC
Q 006996 81 LDN--LDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 131 (622)
Q Consensus 81 lDn--~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~ 131 (622)
+|| ..+|++||+.|+.+++|+|.+|+.|+.|++.++.|+ +.||+|.++-.
T Consensus 141 ~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~~~ 192 (679)
T PRK14851 141 LDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFNIG 192 (679)
T ss_pred CCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC-CCCHhHhccCC
Confidence 997 578999999999999999999999999999999997 89999987643
No 30
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.89 E-value=4.4e-23 Score=214.06 Aligned_cols=162 Identities=22% Similarity=0.283 Sum_probs=128.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccc--cCchHHHHHHHHHHhhCCCCeEEEEeccCC----------------
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSH--VGQSKAKVARDAVLKFRPQMSITAHHANVK---------------- 62 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~d--IGk~KaevAa~~l~~~NP~v~I~a~~~~i~---------------- 62 (622)
|++.|||+|+|+|.|+|+.|||+|||||+.+| +|++||++|+++|+++||+++|+++...|.
T Consensus 18 La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~ 97 (307)
T cd01486 18 LLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSIPMPGHPISESEVPSTLK 97 (307)
T ss_pred HHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeecccccccccccccccccc
Confidence 46789999999999999999999999999999 999999999999999999999999987761
Q ss_pred CCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCC-------------------CCcc
Q 006996 63 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-------------------KTEC 123 (622)
Q Consensus 63 ~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~-------------------~t~C 123 (622)
+.....++++++|+|++|+||+++|+.+|.+|..+++|+|++ ..||.|++...... .-.|
T Consensus 98 ~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~~~~~~~~~~~~~~~lgC 176 (307)
T cd01486 98 DVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQSGSGDSSSDSIPGSRLGC 176 (307)
T ss_pred CHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCcccccccccccccccCCCCcce
Confidence 011124789999999999999999999999999999999985 66999998775321 4579
Q ss_pred ccccCCCCC-------CCCCcccccCCCCCceeeehhhhHHHHHHHhCC
Q 006996 124 YECQPKPAP-------KTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGD 165 (622)
Q Consensus 124 y~C~~~~~~-------~~~P~CTi~~~P~~~~hcI~wa~~~~f~~lF~~ 165 (622)
|-|.---.| .--..||+. .|...--+-..|.| ||-.+..+
T Consensus 177 YfCnDv~ap~~s~~drtlDqqctvt-rpG~a~ias~~avE-l~~s~lqh 223 (307)
T cd01486 177 YFCNDVVAPGDSLKDRTLDQQCTVT-RPGLSMIASSIAVE-LLVSLLQH 223 (307)
T ss_pred eeeCCEecCCCCCCCcccCccccee-cCchHHHHHHHHHH-HHHHHHcC
Confidence 999843222 123579984 45543333456777 56666554
No 31
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.89 E-value=2.3e-23 Score=193.68 Aligned_cols=114 Identities=30% Similarity=0.598 Sum_probs=103.8
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|+|+.+||+|||||+.+|||++||++++++++++||.++|+++..++++.. ..++++++|+||+|
T Consensus 21 L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~-~~~~~~~~d~vi~~ 99 (135)
T PF00899_consen 21 LARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKIDEEN-IEELLKDYDIVIDC 99 (135)
T ss_dssp HHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCSHHH-HHHHHHTSSEEEEE
T ss_pred HHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccccccc-ccccccCCCEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999995433 36788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEE
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV 115 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~v 115 (622)
+|+..+|.++|++|+.+++|+|++|+.|+.|+++.
T Consensus 100 ~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 100 VDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp SSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 99999999999999999999999999999999964
No 32
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=99.89 E-value=5.7e-23 Score=203.65 Aligned_cols=116 Identities=16% Similarity=0.354 Sum_probs=107.7
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCc--cccCchHHHHHHHHHHhhCCCCeEEEEeccCCC-CCchhhhhccCCEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFFKQFNVV 77 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~--~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~-~~~~~~f~~~~DlV 77 (622)
|+++|||+|+|+|.|.|+.|||+|||||+. .|+|++||++++++|+++||+++|+++...+.. .....+|+++||+|
T Consensus 38 L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvV 117 (198)
T cd01485 38 LVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLV 117 (198)
T ss_pred HHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEE
Confidence 467899999999999999999999999998 899999999999999999999999999888752 23456899999999
Q ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEE
Q 006996 78 LNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH 116 (622)
Q Consensus 78 i~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi 116 (622)
|+|.|+..+|.++|++|+.+++|+|.+|+.|+.|++++.
T Consensus 118 i~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~ 156 (198)
T cd01485 118 IATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFD 156 (198)
T ss_pred EECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEc
Confidence 999999999999999999999999999999999999754
No 33
>PRK14852 hypothetical protein; Provisional
Probab=99.88 E-value=4.8e-23 Score=239.68 Aligned_cols=128 Identities=21% Similarity=0.331 Sum_probs=119.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|+|+|+.|||||||+|+..|||++||++++++++++||.++|+++...++..+ ..+|++++|+||+|
T Consensus 351 LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en-~~~fl~~~DiVVDa 429 (989)
T PRK14852 351 LARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAET-IDAFLKDVDLLVDG 429 (989)
T ss_pred HHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHH-HHHHhhCCCEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999997655 36899999999999
Q ss_pred cCCH--HHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCC
Q 006996 81 LDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 130 (622)
Q Consensus 81 lDn~--~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~ 130 (622)
+|++ ++|++++..|++++||+|.+|+.|+.|++.++.|+ ++||+|.++-
T Consensus 430 ~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~-~~~~~~~f~~ 480 (989)
T PRK14852 430 IDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG-GMNFDSYFGI 480 (989)
T ss_pred CCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC-CCCHHHhCCC
Confidence 9984 57899999999999999999999999999999986 4999999864
No 34
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.88 E-value=1e-22 Score=190.76 Aligned_cols=116 Identities=32% Similarity=0.586 Sum_probs=109.5
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.+||+||||++.+|+|++|+++++++++++||+++|+++...+..... .+++.++|+||+|
T Consensus 18 L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~-~~~~~~~diVi~~ 96 (143)
T cd01483 18 LARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNL-DDFLDGVDLVIDA 96 (143)
T ss_pred HHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhH-HHHhcCCCEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999988865433 6889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEe
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 117 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~ 117 (622)
.|+.++|.++|++|+++++|+|++|+.|+.|+++++.
T Consensus 97 ~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 97 IDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 9999999999999999999999999999999999887
No 35
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.88 E-value=1.6e-22 Score=196.58 Aligned_cols=125 Identities=22% Similarity=0.361 Sum_probs=113.1
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||+||+++ .+|||++|+++++++++++||.++|+++..+++... ..++++++|+||+|
T Consensus 18 La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~-~~~~l~~~DlVi~~ 95 (174)
T cd01487 18 LARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDENN-LEGLFGDCDIVVEA 95 (174)
T ss_pred HHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChhh-HHHHhcCCCEEEEC
Confidence 3578999999999999999999999954 789999999999999999999999999999987643 35799999999999
Q ss_pred cCCHHHHHHHHHHHHHc-CCCEEEeccccccceEEEEeCCC--Ccccccc
Q 006996 81 LDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYECQ 127 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~-~iPlI~sGt~G~~G~v~vi~p~~--t~Cy~C~ 127 (622)
+||+.+|..+++.|.+. ++|+|.++..|+.|++..+.|+. .+||+|.
T Consensus 96 ~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 96 FDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 99999999888887776 99999999999999999887765 4799998
No 36
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.87 E-value=1.2e-22 Score=214.86 Aligned_cols=116 Identities=11% Similarity=0.163 Sum_probs=108.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++ |||+|+|+|.|.|+.|||| +||+.+|||++|+++|++++.++||.++|+.+ .++++++|+||+|
T Consensus 92 La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~i~~~----------~~li~~~DlVid~ 158 (318)
T TIGR03603 92 LCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKNVDEL----------KDLLKDYNYIIIC 158 (318)
T ss_pred HhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCEEeeH----------HHHhCCCCEEEEC
Confidence 457 9999999999999999999 99999999999999999999999999999763 4678999999999
Q ss_pred cCCHHHHHH--HHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCC
Q 006996 81 LDNLDARRH--VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 129 (622)
Q Consensus 81 lDn~~aR~~--vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~ 129 (622)
+||+.+|+. +|++|+++++|||.++..|+.||+.++.|+.|+||+|.++
T Consensus 159 tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~~ 209 (318)
T TIGR03603 159 TEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTLPPETGCFECLER 209 (318)
T ss_pred CCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHccc
Confidence 999999955 9999999999999999999999999999999999999864
No 37
>PRK07877 hypothetical protein; Provisional
Probab=99.87 E-value=1.9e-22 Score=231.75 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=117.4
Q ss_pred CcccCc-cEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEE
Q 006996 1 MVSERQ-LEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLN 79 (622)
Q Consensus 1 lv~~Gv-G~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~ 79 (622)
|+++|| |+|+|+|+|+||+|||||| +|+..|||++||++|+++|+++||.++|+++...++..+. .+|+.++|+||+
T Consensus 125 LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~-~~~l~~~DlVvD 202 (722)
T PRK07877 125 LAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV-DAFLDGLDVVVE 202 (722)
T ss_pred HHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH-HHHhcCCCEEEE
Confidence 457896 9999999999999999999 5999999999999999999999999999999999986554 689999999999
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEeccccccceEE----EEeCCCCccccccCCCCC-CCCCcccc
Q 006996 80 GLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT----VHVKGKTECYECQPKPAP-KTYPVCTI 140 (622)
Q Consensus 80 alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~----vi~p~~t~Cy~C~~~~~~-~~~P~CTi 140 (622)
|+||+++|..+|+.|++++||+|.++..+ |++. -+.| .++||.|++...+ ..++.|+.
T Consensus 203 ~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl~~~~~~~~~~~~~~ 265 (722)
T PRK07877 203 ECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGLLGDIDAAKLAGLST 265 (722)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeeccCCCCChhhhccCCh
Confidence 99999999999999999999999998655 7773 2456 7899999986543 34444444
No 38
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.85 E-value=3e-20 Score=203.00 Aligned_cols=128 Identities=19% Similarity=0.315 Sum_probs=115.7
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCC-CchhhhhccCCEEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP-KFNVEFFKQFNVVLN 79 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~-~~~~~f~~~~DlVi~ 79 (622)
||+.|+|+|+|+|.|.|+.+||+||||++.+|||++||+++++.|+++||+++++++...+..- ..+.+||.+||+||.
T Consensus 39 LvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~ 118 (425)
T cd01493 39 LVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIA 118 (425)
T ss_pred HHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEE
Confidence 5789999999999999999999999999999999999999999999999999999998877531 234689999999999
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCC
Q 006996 80 GLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 129 (622)
Q Consensus 80 alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~ 129 (622)
+.++...+..++++|+.+++|+|.+++.|+.|++++..|.. .+.++.++
T Consensus 119 t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~h-~i~et~p~ 167 (425)
T cd01493 119 TNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKEH-TIVESHPD 167 (425)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECCe-EEEECCCC
Confidence 99999999999999999999999999999999999999843 36666543
No 39
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.85 E-value=2.7e-21 Score=193.61 Aligned_cols=124 Identities=23% Similarity=0.375 Sum_probs=108.3
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||||||+| .+|||++|+++++++++++||+++|+++...++... ..++++++|+||+|
T Consensus 47 La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~-~~~~~~~~DvVI~a 124 (212)
T PRK08644 47 LARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPFVEIEAHNEKIDEDN-IEELFKDCDIVVEA 124 (212)
T ss_pred HHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCHHH-HHHHHcCCCEEEEC
Confidence 4578999999999999999999999976 789999999999999999999999999999987643 34789999999999
Q ss_pred cCCHHHHHHHHHHHHHc-CCCEEEeccccccceEEEEeCCC--Cccccc
Q 006996 81 LDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYEC 126 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~-~iPlI~sGt~G~~G~v~vi~p~~--t~Cy~C 126 (622)
+||+.+|.++++.|.++ ++|+|.++..|..|++..+.|.. ..||.|
T Consensus 125 ~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (212)
T PRK08644 125 FDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV 173 (212)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC
Confidence 99999999999999998 99999987667777777666643 345533
No 40
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.84 E-value=3e-21 Score=195.54 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=100.8
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|+|+|+|+|+|.|+.||||||++++.+|||++|+++++++++++||+++|+++...++..+...-+..+||+||+|
T Consensus 30 Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~Vvda 109 (231)
T cd00755 30 LARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDA 109 (231)
T ss_pred HHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999987655543334579999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccc
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLG 111 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G 111 (622)
.|+..+|.+++++|+.+++|+|.++..|-+.
T Consensus 110 iD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~ 140 (231)
T cd00755 110 IDSIRAKVALIAYCRKRKIPVISSMGAGGKL 140 (231)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCC
Confidence 9999999999999999999999998877543
No 41
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.79 E-value=1.8e-19 Score=185.87 Aligned_cols=108 Identities=24% Similarity=0.409 Sum_probs=97.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhh-ccCCEEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFF-KQFNVVLN 79 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~-~~~DlVi~ 79 (622)
|+++|||+|+|+|+|.|+.||||||+++..++||++||++++++++++||+++|+++...++..+. .+++ .+||+||+
T Consensus 49 Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~-~~ll~~~~D~VId 127 (268)
T PRK15116 49 LARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITPDNV-AEYMSAGFSYVID 127 (268)
T ss_pred HHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccChhhH-HHHhcCCCCEEEE
Confidence 467899999999999999999999999999999999999999999999999999999887765444 3455 57999999
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEeccccc
Q 006996 80 GLDNLDARRHVNRLCLAADVPLVESGTTGF 109 (622)
Q Consensus 80 alDn~~aR~~vn~~c~~~~iPlI~sGt~G~ 109 (622)
|.|++.++..++++|+.+++|+|.+|..|-
T Consensus 128 aiD~~~~k~~L~~~c~~~~ip~I~~gGag~ 157 (268)
T PRK15116 128 AIDSVRPKAALIAYCRRNKIPLVTTGGAGG 157 (268)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 999999999999999999999999986663
No 42
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.79 E-value=4.5e-19 Score=210.64 Aligned_cols=121 Identities=15% Similarity=0.337 Sum_probs=112.5
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|.|+.+||+|||||+.+|||++||++++++|+++||.|+|+++...++ .+|+++||+||+|
T Consensus 43 L~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~l~-----~e~l~~fdvVV~t 117 (1008)
T TIGR01408 43 LVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVPFN-----EEFLDKFQCVVLT 117 (1008)
T ss_pred HHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecccCC-----HHHHcCCCEEEEC
Confidence 56899999999999999999999999999999999999999999999999999999987664 5799999999999
Q ss_pred cCCHHHHHHHHHHHHHcC--CCEEEeccccccceEEEEeCCCCccccccCC
Q 006996 81 LDNLDARRHVNRLCLAAD--VPLVESGTTGFLGQVTVHVKGKTECYECQPK 129 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~--iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~ 129 (622)
.|+.+.|..+|++|+.++ +|+|.+++.|+.|++++ ..++||.|...
T Consensus 118 ~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~---D~g~~f~~~d~ 165 (1008)
T TIGR01408 118 EMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFC---DFGDEFEVLDT 165 (1008)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEe---cCCCceEEEeC
Confidence 999999999999999999 99999999999998876 35688888764
No 43
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.77 E-value=3e-19 Score=178.35 Aligned_cols=108 Identities=22% Similarity=0.385 Sum_probs=101.1
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|+|+|+|||+|.|+++|+|||.--...+||++|+++++++++.+||.++|.++...+++++...-|..+||+||+|
T Consensus 49 LaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDa 128 (263)
T COG1179 49 LARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDA 128 (263)
T ss_pred HHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEc
Confidence 56899999999999999999999999888899999999999999999999999999999999887765566789999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEecccc
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
.|++.+...+-.+|+++++|+|.+|..|
T Consensus 129 iD~v~~Kv~Li~~c~~~ki~vIss~Gag 156 (263)
T COG1179 129 IDSVRAKVALIAYCRRNKIPVISSMGAG 156 (263)
T ss_pred hhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence 9999999999999999999999998655
No 44
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.77 E-value=5.3e-19 Score=178.33 Aligned_cols=125 Identities=30% Similarity=0.564 Sum_probs=113.7
Q ss_pred ccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCC-CCchhhhh----------
Q 006996 3 SERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFF---------- 71 (622)
Q Consensus 3 ~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~-~~~~~~f~---------- 71 (622)
+-|+|++.+.|.|.||+.|+||-| |+....|.+|+++|++.|..+||+|.|+.|+-+|+. .+| ..|.
T Consensus 103 RCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenF-d~F~~~is~g~~~~ 180 (422)
T KOG2336|consen 103 RCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENF-DTFTDRISNGSLCP 180 (422)
T ss_pred hcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEEEEeecceeeehhH-HHHHHHhhcCCCCC
Confidence 459999999999999999999999 899999999999999999999999999999999953 334 2332
Q ss_pred -ccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccc--cccceEEEEeCCCCccccccCC
Q 006996 72 -KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT--GFLGQVTVHVKGKTECYECQPK 129 (622)
Q Consensus 72 -~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~--G~~G~v~vi~p~~t~Cy~C~~~ 129 (622)
+..|+|+.|+||++||..||.+|-..+--|+++|+. ...||+|.|.||.|+||.|.++
T Consensus 181 gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPP 241 (422)
T KOG2336|consen 181 GKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGETACFACAPP 241 (422)
T ss_pred CCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCccceecccCc
Confidence 358999999999999999999999999999999987 7899999999999999999764
No 45
>PRK06153 hypothetical protein; Provisional
Probab=99.75 E-value=1.8e-18 Score=184.93 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=102.6
Q ss_pred CcccCccEEEEEeCCccCcccccccc-CCCccccCc--hHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQF-LFRQSHVGQ--SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVV 77 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQf-Lf~~~dIGk--~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlV 77 (622)
|++.|||+|+|||.|+|+.||||||+ +|+.+|||+ +||+++++++.++|| .|.++...++..+ ...+.++|+|
T Consensus 195 LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~--~I~~~~~~I~~~n--~~~L~~~DiV 270 (393)
T PRK06153 195 VAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR--GIVPHPEYIDEDN--VDELDGFTFV 270 (393)
T ss_pred HHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC--eEEEEeecCCHHH--HHHhcCCCEE
Confidence 45789999999999999999999998 689999999 999999999999998 4678888885433 4578999999
Q ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCC-CccccccCCCC
Q 006996 78 LNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKPA 131 (622)
Q Consensus 78 i~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~-t~Cy~C~~~~~ 131 (622)
|+|+|+.++|.+||++|..+++|||++|..= . +..+. +.|.+|++..|
T Consensus 271 ~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l-----~-~~~g~l~G~~Rvt~~~p 319 (393)
T PRK06153 271 FVCVDKGSSRKLIVDYLEALGIPFIDVGMGL-----E-LSNGSLGGILRVTLSTP 319 (393)
T ss_pred EEcCCCHHHHHHHHHHHHHcCCCEEEeeecc-----e-ecCCCcCcEEEEEEecC
Confidence 9999999999999999999999999999741 1 11332 56999987544
No 46
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.75 E-value=3.9e-18 Score=169.41 Aligned_cols=123 Identities=24% Similarity=0.411 Sum_probs=98.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|+|+|+|+|.|.|+.|||+||+ |+.+|+|++|+++++++++++||.++|+++..+++..+. .+++.++|+||+|
T Consensus 40 La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~~~~~-~~~~~~~DlVi~a 117 (200)
T TIGR02354 40 LARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPYTEIEAYDEKITEENI-DKFFKDADIVCEA 117 (200)
T ss_pred HHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCCHhHH-HHHhcCCCEEEEC
Confidence 35789999999999999999999997 567999999999999999999999999999999976443 5789999999999
Q ss_pred cCCHHHHHHHHHHHH-HcC-CCEEEeccccccceE--EEEeCC--CCcccccc
Q 006996 81 LDNLDARRHVNRLCL-AAD-VPLVESGTTGFLGQV--TVHVKG--KTECYECQ 127 (622)
Q Consensus 81 lDn~~aR~~vn~~c~-~~~-iPlI~sGt~G~~G~v--~vi~p~--~t~Cy~C~ 127 (622)
+||+++|..++..|. .++ .+++.+ .|+.|+. ..+.+. ...||.|.
T Consensus 118 ~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~~~ 168 (200)
T TIGR02354 118 FDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFYLCG 168 (200)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEEEcC
Confidence 999999998766654 444 444442 3444433 334332 35699993
No 47
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=99.69 E-value=2.2e-17 Score=143.02 Aligned_cols=87 Identities=44% Similarity=0.770 Sum_probs=69.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeCCC
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQQ 488 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~~~ 488 (622)
++.+|.+++||++|++.|+|+++||..|.|++++++||++++ +.|++|++|+|++| ||++|++|+|+|++|
T Consensus 1 tv~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de-------~~~~~~l~k~L~el--gi~~gs~L~v~D~~q 71 (87)
T PF14732_consen 1 TVKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDE-------EEYDDNLPKKLSEL--GIVNGSILTVDDFDQ 71 (87)
T ss_dssp EEEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSS-------SSSTTCTTSBGGGG--T--TT-EEEEEETTT
T ss_pred CEEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCc-------chhhhcccCChhHc--CCCCCCEEEEEEcCC
Confidence 467888999999999999999999999999999999999986 24689999999999 999999999999999
Q ss_pred CeEEEEEEEeccCCCC
Q 006996 489 ELTCNINIKHREEFDE 504 (622)
Q Consensus 489 ~~~~~l~i~~~~~~~~ 504 (622)
+++|.|+|.|+++++|
T Consensus 72 ~~~~~i~i~h~~~~~e 87 (87)
T PF14732_consen 72 DFNLEINIKHREELEE 87 (87)
T ss_dssp TEEEEEEEEE-SSS--
T ss_pred CcEEEEEEEecCcccC
Confidence 9999999999987653
No 48
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.53 E-value=9.3e-16 Score=116.49 Aligned_cols=45 Identities=62% Similarity=1.249 Sum_probs=39.8
Q ss_pred CCCccccccCCCCCCCCCcccccCCCCCceeeehhhhHHHHHHHhC
Q 006996 119 GKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 164 (622)
Q Consensus 119 ~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~wa~~~~f~~lF~ 164 (622)
+.|+||+|..++.++++|+|||||+|+.++|||+||++ +|+.+||
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~-~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKD-LFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHH-HHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHH-HHHHHhC
Confidence 57999999999998899999999999999999999996 9999996
No 49
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.1e-13 Score=136.50 Aligned_cols=115 Identities=19% Similarity=0.377 Sum_probs=108.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
++.+|||+++++|.-.|....++-|||.+.+++|+.||++..++++.+||.|.|.+....+.+ .+.+||.+||+||-.
T Consensus 50 ivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNPmV~v~~d~edl~e--k~eeff~qFdlVV~~ 127 (331)
T KOG2014|consen 50 IVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQDLNPMVDVSVDKEDLSE--KDEEFFTQFDLVVAT 127 (331)
T ss_pred hhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHhcCCceEEEechhhhhh--cchhhhhceeEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999975 347999999999998
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEe
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 117 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~ 117 (622)
--..+++..+|..|++++++++.++..|+.|.+++-.
T Consensus 128 ~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL 164 (331)
T KOG2014|consen 128 DQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADL 164 (331)
T ss_pred ccchhhhhhHHHHHHhcCceEEeccccceeeeeeeeh
Confidence 8889999999999999999999999999999988764
No 50
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.4e-13 Score=137.15 Aligned_cols=108 Identities=18% Similarity=0.247 Sum_probs=98.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++||+++|.|||+|.|.+|.|||+-....+|||.||+.++++.++++.|.+.|.+...-++..+-.+-++...|+|++|
T Consensus 93 L~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDc 172 (430)
T KOG2018|consen 93 LLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDC 172 (430)
T ss_pred HHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEh
Confidence 46899999999999999999999999999999999999999999999999999999988887655555567889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEecccc
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
+||+++..-+-.+|..+++++|.+-..+
T Consensus 173 iDNidtKVdLL~y~~~~~l~Viss~Gaa 200 (430)
T KOG2018|consen 173 IDNIDTKVDLLEYCYNHGLKVISSTGAA 200 (430)
T ss_pred hhhhhhhhHHHHHHHHcCCceEeccCcc
Confidence 9999999999999999999999875444
No 51
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.26 E-value=6.5e-12 Score=127.31 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=68.8
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|.|+.|||+|||||+. ++|++||++++++++++||.++|+++..+++.. .+|.+|+.+
T Consensus 45 LaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP~V~V~~i~~rld~~-------n~fqvvV~~ 116 (287)
T PTZ00245 45 LVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNPHVSVYDAVTKLDGS-------SGTRVTMAA 116 (287)
T ss_pred HHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCCCcEEEEcccccCCc-------CCceEEEEE
Confidence 468899999999999999999999999987 689999999999999999999999999888642 388999988
Q ss_pred cCCHH
Q 006996 81 LDNLD 85 (622)
Q Consensus 81 lDn~~ 85 (622)
.-..+
T Consensus 117 ~~~le 121 (287)
T PTZ00245 117 VITEE 121 (287)
T ss_pred cccHH
Confidence 65554
No 52
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.9e-11 Score=135.93 Aligned_cols=148 Identities=18% Similarity=0.349 Sum_probs=124.0
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
++..||+++||.|.-.+.+++|..||+++++|||+++|++..++|.++|+.|.|.++...++ .+|+++|++|+.+
T Consensus 56 liLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~-----~e~L~~FqvVVlt 130 (1013)
T KOG2012|consen 56 LILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNYVPVVVLTGPLT-----EEFLSDFQVVVLT 130 (1013)
T ss_pred HhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcceeeEEecCccc-----HHHHhCCcEEEEe
Confidence 46889999999999999999999999999999999999999999999999999999987764 6899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCC--CCCCCCCcccccCCCCCceeeehhhhH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKD 156 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~~~P~CTi~~~P~~~~hcI~wa~~ 156 (622)
--..+....||++|+.+++.+|-+-+.|..|++++= -++-|.|+-. ..|.+..+-.|...-...+-|+.=+++
T Consensus 131 ~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCD---FG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH 205 (1013)
T KOG2012|consen 131 DASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCD---FGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARH 205 (1013)
T ss_pred cCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhcc---CCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccc
Confidence 888999999999999999999999999999998764 3566666633 234455555555444455666655544
No 53
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.1e-11 Score=128.20 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=107.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCC-CCchhhhhccCCEEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD-PKFNVEFFKQFNVVLN 79 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~-~~~~~~f~~~~DlVi~ 79 (622)
||..|+|.|++||.-.|+.+++..+|+...+.+|++||+++.+.++++||+|+-.+....... ...+..||.+|++|+.
T Consensus 46 Lvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvVia 125 (523)
T KOG2016|consen 46 LVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIA 125 (523)
T ss_pred hcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeec
Confidence 688999999999999999999999999999999999999999999999999998887666521 1234689999999999
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCC
Q 006996 80 GLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG 119 (622)
Q Consensus 80 alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~ 119 (622)
+--+.+.-..+.+.|+.+++||+.+.+.|+.|.+++++..
T Consensus 126 tnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikE 165 (523)
T KOG2016|consen 126 TNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKE 165 (523)
T ss_pred cccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeee
Confidence 9888888889999999999999999999999999998764
No 54
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.02 E-value=3.8e-10 Score=126.61 Aligned_cols=110 Identities=19% Similarity=0.233 Sum_probs=93.3
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+.+|+++|+.||.|.+ .||||| ||+. ++.|++ +||+++|+.+.... ..--.+.|+++|+||..
T Consensus 148 L~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v~v~~i~~~~--~~dl~ev~~~~DiVi~v 211 (637)
T TIGR03693 148 LIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDALLVQEIDFAE--DQHLHEAFEPADWVLYV 211 (637)
T ss_pred HHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCCceEeccCCc--chhHHHhhcCCcEEEEE
Confidence 45789999999999999 999999 8988 877777 99999999987522 23335788999999999
Q ss_pred cCCH--HHHHHHHHHHHHcC---CCEEEeccccccceEEEEeCCCCccccccC
Q 006996 81 LDNL--DARRHVNRLCLAAD---VPLVESGTTGFLGQVTVHVKGKTECYECQP 128 (622)
Q Consensus 81 lDn~--~aR~~vn~~c~~~~---iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~ 128 (622)
.|++ .--+++|+.|++.+ +|++-+|+.++.|.+.. |+.|+|++|..
T Consensus 212 sDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTGCWeCa~ 262 (637)
T TIGR03693 212 SDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAAW 262 (637)
T ss_pred CCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCcHHHHHH
Confidence 9954 45689999999999 77888888888888766 99999999953
No 55
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=98.92 E-value=3.8e-09 Score=115.00 Aligned_cols=162 Identities=22% Similarity=0.296 Sum_probs=119.8
Q ss_pred cccCccEEEEEeCCccCccccccccCCCcccc---CchHHHHHHHHHHhhCCCCeEEEEeccCCCC--C-----------
Q 006996 2 VSERQLEAIKIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKFRPQMSITAHHANVKDP--K----------- 65 (622)
Q Consensus 2 v~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dI---Gk~KaevAa~~l~~~NP~v~I~a~~~~i~~~--~----------- 65 (622)
++=||-+||.||..+|..||--||-||+-+|- |++||++|+++|++++|.+.-+.|...|-.+ .
T Consensus 360 l~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~ 439 (669)
T KOG2337|consen 360 LGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKK 439 (669)
T ss_pred HhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHH
Confidence 44599999999999999999999999999996 5999999999999999999998888777211 0
Q ss_pred ---chhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEE-------------------eCC-CCc
Q 006996 66 ---FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-------------------VKG-KTE 122 (622)
Q Consensus 66 ---~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi-------------------~p~-~t~ 122 (622)
--..+++..|+|+..+|+.++|..-.-+|...++-+|++.. ||...+..- +|+ +-.
T Consensus 440 D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaAL-GFDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLG 518 (669)
T KOG2337|consen 440 DLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAAL-GFDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLG 518 (669)
T ss_pred HHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeeec-ccceeEEEecCCCCcccccccccccccccCcccce
Confidence 01357889999999999999999999899999999998763 554433221 122 357
Q ss_pred cccccCCCCCC------C-CCcccccCCCCCceeeehhhhHHHHHHHhCCC
Q 006996 123 CYECQPKPAPK------T-YPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK 166 (622)
Q Consensus 123 Cy~C~~~~~~~------~-~P~CTi~~~P~~~~hcI~wa~~~~f~~lF~~~ 166 (622)
||-|..--+|. + -..||+. .|....-.-..|.+ ++..+.-.+
T Consensus 519 CYFCnDV~AP~nSl~DRTLDQqCTVt-RPG~a~IA~alAVE-LlvslLQhP 567 (669)
T KOG2337|consen 519 CYFCNDVVAPGNSLTDRTLDQQCTVT-RPGVANIASALAVE-LLVSLLQHP 567 (669)
T ss_pred eEeEcceecCCCcccccchhheeecc-CCchhHHHHHHHHH-HHHHHHhCc
Confidence 99997432221 1 3579984 45543322346777 555555443
No 56
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=98.79 E-value=1e-08 Score=88.30 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=67.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHh--cCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeCC
Q 006996 410 LEINTSRSKLRDFVEKIVKAK--LGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQ 487 (622)
Q Consensus 410 l~i~~~~~TL~~li~~ilk~~--~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~~ 487 (622)
|+++ ..+||++||+.+ .++ +.|..|+|+.+++.||.... ...++.++.||.|+|.|| +.+|.++.|+|..
T Consensus 1 i~v~-~~~TL~~lid~L-~~~~~~qlk~PSlt~~~k~LYm~~p---p~Lee~Tr~NL~k~l~eL---~~~g~ei~VtD~~ 72 (84)
T PF08825_consen 1 IEVS-PSWTLQDLIDSL-CEKPEFQLKKPSLTTANKTLYMQSP---PSLEEATRPNLSKKLKEL---LSDGEEITVTDPT 72 (84)
T ss_dssp EEES-TTSBSHHHHHHH-HHSTTT--SS-EEESSEEEEEESSS---HHHHHHTGGGGSSBTTTT---HHSSEEEEEEETT
T ss_pred CCcC-ccchHHHHHHHH-HhChhhhcCCCcccCCCceEEEeCC---HHHHHHhhhhhhhhHHHH---hcCCCEEEEECCC
Confidence 4566 579999999995 555 89999999999999999875 355578999999999999 8999999999999
Q ss_pred CCeEEEEEEEe
Q 006996 488 QELTCNINIKH 498 (622)
Q Consensus 488 ~~~~~~l~i~~ 498 (622)
-...+.+.|.+
T Consensus 73 lp~~~~~rl~f 83 (84)
T PF08825_consen 73 LPISLRLRLKF 83 (84)
T ss_dssp ESSEEEEEEEE
T ss_pred CceeEEEEEEe
Confidence 98888888764
No 57
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=98.76 E-value=3.1e-09 Score=98.26 Aligned_cols=88 Identities=24% Similarity=0.385 Sum_probs=59.7
Q ss_pred ceeeEeecccccceeecccCCCCCCCCcccCC-cccE--EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeC
Q 006996 373 YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCS-ETPL--SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVG 449 (622)
Q Consensus 373 ~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~-~~~~--~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~ 449 (622)
|||+|+|++.. ++..++|.+|...-+ .+ .+++ +++++. ++||++|+++ ++++||+++.||++|.++||...
T Consensus 1 yrN~F~NLAlP---~~~fsEP~~~~k~k~-~~~~~T~WDr~~v~~-~~Tl~~li~~-~~~~~~lev~ml~~g~~~LY~~f 74 (125)
T PF09358_consen 1 YRNSFLNLALP---FFSFSEPIPAPKTKY-NDKEWTLWDRIEVNG-DMTLQELIDY-FKEKYGLEVTMLSQGVSLLYSSF 74 (125)
T ss_dssp --EEEEETTTT---EEEEE---B--EEEE-TTEEETTT-EEEEES---BHHHHHHH-HHHTTS-EEEEEEETTEEEEETT
T ss_pred CccEEEEcCcc---ceeeeeccCCCceEe-cCccccceeEEEEcC-CCCHHHHHHH-HHHHhCceEEEEEeCCEEEEecC
Confidence 79999999932 466677777765544 33 3444 466775 7999999999 69999999999999999999987
Q ss_pred CCccHHHHHHHhhhhhcccccCC
Q 006996 450 DDLDEVEVANYAANLEKVLSQLP 472 (622)
Q Consensus 450 ~~l~~~~~~~~~~nl~k~L~el~ 472 (622)
+. +...++|++++++|.
T Consensus 75 -~~-----~~~~~rl~~~i~elv 91 (125)
T PF09358_consen 75 -PP-----PKHKERLKMPISELV 91 (125)
T ss_dssp --H-----HHHHHHTTSBHHHHH
T ss_pred -Ch-----hhhHHHhCCcHHHHH
Confidence 21 345678899999984
No 58
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=97.60 E-value=7.7e-05 Score=82.48 Aligned_cols=32 Identities=41% Similarity=0.581 Sum_probs=30.6
Q ss_pred cCCccCCCCcHhHHHHHHHHHHHHHHHcCCCC
Q 006996 299 IGNLSFDKDDQLAVEFVTAAANIRAASFGISL 330 (622)
Q Consensus 299 ~~~l~FDKDD~~h~dFV~AaaNLRA~~f~I~~ 330 (622)
+.|+.||.+|+.|++||.++|||||+.|+|+.
T Consensus 245 P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 245 PTPLEFDVNNPLHLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 67999999999999999999999999999986
No 59
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=93.86 E-value=0.11 Score=44.60 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=31.9
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcCcc--cceeeEeecccccceeecccCCCCCCCCcccCCc
Q 006996 343 IVHAVATTNAIIAGLIVIEAIKVLLKDTD--KYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 405 (622)
Q Consensus 343 IIPAIATTnAiVAGl~vlE~~Kvl~~~~~--~~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~ 405 (622)
.+.-+.++.++|+++++.|++|+|.+..+ ..+..+++......+ ... ..+++.|.+|+.
T Consensus 22 ~~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~---~i~-~~k~~~C~~C~~ 82 (84)
T PF05237_consen 22 EAGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFR---SIR-IKKNPDCPVCGP 82 (84)
T ss_dssp TS-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEE---EEE-----TT-TTT--
T ss_pred ccccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEE---EEe-cCCCccCcCcCc
Confidence 34567788899999999999999997632 234444443321111 112 247899999985
No 60
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.40 E-value=0.11 Score=53.40 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=39.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcCccc--ceeeEeecccccceeecccCCCCCCCCcccC
Q 006996 343 IVHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVC 403 (622)
Q Consensus 343 IIPAIATTnAiVAGl~vlE~~Kvl~~~~~~--~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC 403 (622)
..+.++.++++||++++.|++|+|.+..+. .|..+++......+ ....+++|+|++|
T Consensus 182 ~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~----~~~~~~~~~C~~C 240 (240)
T TIGR02355 182 EAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFR----EMKLPKNPTCPVC 240 (240)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEE----EEeccCCccCCCC
Confidence 456788899999999999999999976433 34444444321111 2234678999998
No 61
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.31 E-value=0.33 Score=52.47 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=36.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCcccc--eeeEeecccccceeecccCCCCCCCCcccCCc
Q 006996 344 VHAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 405 (622)
Q Consensus 344 IPAIATTnAiVAGl~vlE~~Kvl~~~~~~~--r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~ 405 (622)
.+.++.+.+++|++++.|++|+|.+..+.. +...++......+.+ ... ..++|.|++|+.
T Consensus 184 ~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~-~~~-~~k~p~Cp~Cg~ 245 (338)
T PRK12475 184 AGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSI-KVN-KQKKDTCPSCGL 245 (338)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEE-Eec-cCCCCCCCcCCC
Confidence 344555668999999999999999875332 333333331111111 111 125899999985
No 62
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=91.02 E-value=0.34 Score=48.24 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCEEEeccccccceEEEE-eCCCCcccccc
Q 006996 87 RRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQ 127 (622)
Q Consensus 87 R~~vn~~c~~~~iPlI~sGt~G~~G~v~vi-~p~~t~Cy~C~ 127 (622)
-..+|+..++.++||+-....|..+.+-++ .|+.|+|++|+
T Consensus 152 L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 152 LAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred HHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 357899999999999999999888888875 79999999995
No 63
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.86 E-value=0.49 Score=51.77 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=37.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCcccc--eeeEeecccccceeecccCCCCCCCCcccCCc
Q 006996 345 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 405 (622)
Q Consensus 345 PAIATTnAiVAGl~vlE~~Kvl~~~~~~~--r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~ 405 (622)
+.+.+|+++||++++.|++|+|.+..+.. |...++..... +. ....+++|.|.+|+.
T Consensus 300 gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~---~~-~~~~~~~~~C~~C~~ 358 (376)
T PRK08762 300 GVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMR---FR-ELRLPPDPHCPVCAP 358 (376)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCe---EE-EEeccCCCCCCCCCC
Confidence 35677899999999999999999864333 33223322111 11 122357899999986
No 64
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.61 E-value=0.75 Score=49.76 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=35.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCcccc--eeeEeecccccceeecccC-CCCCCCCcccCCc
Q 006996 345 HAVATTNAIIAGLIVIEAIKVLLKDTDKY--RMTYCLEHITKKMLLMPVE-PYEPNKSCYVCSE 405 (622)
Q Consensus 345 PAIATTnAiVAGl~vlE~~Kvl~~~~~~~--r~~f~~~~~~~~~~~~~~~-~~~pn~~C~vC~~ 405 (622)
..++.+.++||++++.|++|+|.|..+.. |...++..... +.... ....+|.|++|+.
T Consensus 185 gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~---~~~~~~~~~~~~~Cp~Cg~ 245 (339)
T PRK07688 185 GIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNE---YSCMNVQKLKKDNCPSCGE 245 (339)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCe---EEEEEecCCCCCCCCCCCC
Confidence 34555778999999999999999864332 33333322111 11111 1235689999985
No 65
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=87.67 E-value=0.96 Score=48.54 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=44.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCcc---cceeeEeecccccceeecccCCCCCCCCcccCCcccEEEEEcCCCCCHHHH
Q 006996 346 AVATTNAIIAGLIVIEAIKVLLKDTD---KYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDF 422 (622)
Q Consensus 346 AIATTnAiVAGl~vlE~~Kvl~~~~~---~~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~l 422 (622)
++..+++++++++++|++ ++.+..+ .-|...++.. .... ...+..++|.|++|+... ++......+.-+.+
T Consensus 239 v~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~-t~~~---~~~~l~k~p~Cp~CG~~~-~~~~~~~~~~~~~~ 312 (318)
T TIGR03603 239 LIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLP-TLEI---QFQDILKQSCCSTCGTFN-KIKFEEQNISTRNI 312 (318)
T ss_pred eehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECC-CCeE---EEEecCCCCCCcccCCcc-ccchhhhhhhHHHH
Confidence 355577899999999999 8887432 1232222222 1111 122346789999998532 33444456677777
Q ss_pred HHHH
Q 006996 423 VEKI 426 (622)
Q Consensus 423 i~~i 426 (622)
++.+
T Consensus 313 ~~~~ 316 (318)
T TIGR03603 313 VKEL 316 (318)
T ss_pred HHHH
Confidence 7764
No 66
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=84.54 E-value=4.6 Score=39.34 Aligned_cols=95 Identities=12% Similarity=0.143 Sum_probs=72.1
Q ss_pred ccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe--
Q 006996 3 SERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG-- 80 (622)
Q Consensus 3 ~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a-- 80 (622)
+.|.-+|.++|...|+..++---- --.-+|.+|++-++. +-+-.|.-.|++...+|+..+. .++++ |+|+-|
T Consensus 42 RGGperi~v~Dgqrve~dDiihrr--~Ga~~GEyKv~Fi~r-l~~~~f~r~V~a~pE~it~dNl--hll~g-DVvvi~IA 115 (217)
T COG4015 42 RGGPERIYVFDGQRVEEDDIIHRR--LGAKVGEYKVDFIKR-LGRVHFGRRVEAFPENITKDNL--HLLKG-DVVVICIA 115 (217)
T ss_pred cCCCeEEEEecCcccCchhhHHHH--hCCCcchhHHHHHHH-hCcCCCCceeecccccccccch--hhhcC-CEEEEEec
Confidence 457889999999999998864211 135689999997654 4556678899999999987653 45555 777666
Q ss_pred -cCCHHHHHHHHHHHHHcCCCEEE
Q 006996 81 -LDNLDARRHVNRLCLAADVPLVE 103 (622)
Q Consensus 81 -lDn~~aR~~vn~~c~~~~iPlI~ 103 (622)
-|....-..+-++|.+.++.-|.
T Consensus 116 GGdT~PvTaaii~ya~~rG~~Tis 139 (217)
T COG4015 116 GGDTIPVTAAIINYAKERGIKTIS 139 (217)
T ss_pred CCCcchhHHHHHHHHHHcCceEee
Confidence 46777778888999999987764
No 67
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=83.40 E-value=2.7 Score=36.08 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEE-eeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEee
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLY-EVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVED 485 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY-~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D 485 (622)
.+..+++ ..+|+++|-.+ |...+|+....... .+| +.+...... -.+-.++|..+ |+++|..|.|.|
T Consensus 15 ~~ekr~~-~~~Tv~eLK~k-l~~~~Gi~~~~m~L---~l~~~~~~~~~~~-----~~dd~~~L~~y--~~~dg~~i~V~D 82 (87)
T PF14560_consen 15 SVEKRFP-KSITVSELKQK-LEKLTGIPPSDMRL---QLKSDKDDSKIEE-----LDDDDATLGSY--GIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEEE-TTSBHHHHHHH-HHHHHTS-TTTEEE---EEE-TSSSSEEEE-----SSGSSSBCCHH--T-STTEEEEEEE
T ss_pred eEEEEcC-CCCCHHHHHHH-HHHHhCCCcccEEE---EEEecCCCccccc-----cCCCccEeecC--CCCCCCEEEEEe
Confidence 4456666 47999999998 68899988765433 123 111111100 12347889999 899999999999
Q ss_pred CC
Q 006996 486 LQ 487 (622)
Q Consensus 486 ~~ 487 (622)
.+
T Consensus 83 ~~ 84 (87)
T PF14560_consen 83 TN 84 (87)
T ss_dssp -T
T ss_pred CC
Confidence 75
No 68
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=82.37 E-value=1.4 Score=37.70 Aligned_cols=64 Identities=27% Similarity=0.317 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
..+++++. .-|+.+|.++| .+.+++..... .||-.....+ ....+..++|+++ |++||++|.+.
T Consensus 15 ~~Rie~~~-~~t~~~L~~kI-~~~l~~~~~~~-----~L~~~~~~~~-----~l~s~~~~tl~~l--glkHGdmlyL~ 78 (80)
T PF11543_consen 15 MKRIEVSP-SSTLSDLKEKI-SEQLSIPDSSQ-----SLSKDRNNKE-----ELKSSDSKTLSSL--GLKHGDMLYLK 78 (80)
T ss_dssp EEEEEE-T-TSBHHHHHHHH-HHHS---TTT--------BSSGGGGG-----CSSS-TT-CCCCT-----TT-EEE--
T ss_pred CEEEEcCC-cccHHHHHHHH-HHHcCCCCcce-----EEEecCCCCc-----ccccCCcCCHHHc--CCCCccEEEEe
Confidence 44677774 67999999995 77888765532 3342211100 0112357899999 99999999763
No 69
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=80.01 E-value=2.5 Score=38.86 Aligned_cols=41 Identities=39% Similarity=0.459 Sum_probs=31.1
Q ss_pred hhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecccccc
Q 006996 68 VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 110 (622)
Q Consensus 68 ~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~ 110 (622)
.+++..+|+||+.+ ++++-...-++|.++++|+|- ||+|+.
T Consensus 62 ~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~Vi-GTTG~~ 102 (124)
T PF01113_consen 62 EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVI-GTTGFS 102 (124)
T ss_dssp HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEE-E-SSSH
T ss_pred HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEE-ECCCCC
Confidence 46788899999999 888888888999999999985 456664
No 70
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.18 E-value=19 Score=31.51 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhCCCCeEEEE--eccCCCCC-chhhhhccCCEEEEecCC--HHHHHHHHHHHHHcCCCEEEecccccc
Q 006996 37 KAKVARDAVLKFRPQMSITAH--HANVKDPK-FNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFL 110 (622)
Q Consensus 37 KaevAa~~l~~~NP~v~I~a~--~~~i~~~~-~~~~f~~~~DlVi~alDn--~~aR~~vn~~c~~~~iPlI~sGt~G~~ 110 (622)
.-...++.+.+. +.+...| ........ .-..-+++.|+||..+|. ..+...+-+.|.++++|++.+-..|..
T Consensus 11 ~~~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 11 RERRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred cHHHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 334455556664 4666666 23332222 124667888999999995 468889999999999999998766643
No 71
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=74.93 E-value=4 Score=44.74 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=46.8
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcCccc--ceeeEeecccccceeecccCCCCCCCCcccCCcccEEEEEcCCCCCHH
Q 006996 343 IVHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLR 420 (622)
Q Consensus 343 IIPAIATTnAiVAGl~vlE~~Kvl~~~~~~--~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~ 420 (622)
..+++.++.++|+++++.|++|+|.|..+. -|-..++..... + ...+.++++.|.+|......- ....+|..
T Consensus 203 ~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~---~-~~~~~~~~~~c~~~~~~~~~~--~~~~~~~~ 276 (370)
T PRK05600 203 TAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTAT---T-RSFRVGADPARPLVTRLRPSY--EAARTDTT 276 (370)
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCE---E-EEEEecCCCCCCccccccCcc--hhcccCHH
Confidence 456788999999999999999999986322 222222222111 1 122335578898887432110 11257888
Q ss_pred HHHHH
Q 006996 421 DFVEK 425 (622)
Q Consensus 421 ~li~~ 425 (622)
+|...
T Consensus 277 el~~~ 281 (370)
T PRK05600 277 SLIDA 281 (370)
T ss_pred HHHHH
Confidence 88876
No 72
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.51 E-value=4.5 Score=41.73 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=24.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCc
Q 006996 344 VHAVATTNAIIAGLIVIEAIKVLLKDT 370 (622)
Q Consensus 344 IPAIATTnAiVAGl~vlE~~Kvl~~~~ 370 (622)
.+.++.++++||++++.|++|+|.+..
T Consensus 191 ~gv~~~~~~~~~~~~a~e~ik~l~g~~ 217 (245)
T PRK05690 191 AGVMAPLVGVIGSLQAMEAIKLLTGYG 217 (245)
T ss_pred CCccchHHHHHHHHHHHHHHHHHhCCC
Confidence 467889999999999999999999764
No 73
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=73.50 E-value=16 Score=29.39 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ .+.|+.+|-+. +.++.|+.... +.++++.| + ..++|.++ |+++|+.+.+
T Consensus 7 ~~~~~v~-~~~tV~~lK~~-i~~~~~~~~~~~~L~~~G~~L-~----------------d~~tL~~~--~i~~~~~I~l 64 (69)
T PF00240_consen 7 TFTLEVD-PDDTVADLKQK-IAEETGIPPEQQRLIYNGKEL-D----------------DDKTLSDY--GIKDGSTIHL 64 (69)
T ss_dssp EEEEEEE-TTSBHHHHHHH-HHHHHTSTGGGEEEEETTEEE-S----------------TTSBTGGG--TTSTTEEEEE
T ss_pred EEEEEEC-CCCCHHHhhhh-cccccccccccceeeeeeecc-c----------------CcCcHHHc--CCCCCCEEEE
Confidence 4567777 46799999998 57777866543 44555555 1 15789999 9999998765
No 74
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=70.57 E-value=18 Score=31.98 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=43.1
Q ss_pred HHHHHHhhC-CCCeEEEEeccC---------CCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEec
Q 006996 41 ARDAVLKFR-PQMSITAHHANV---------KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 105 (622)
Q Consensus 41 Aa~~l~~~N-P~v~I~a~~~~i---------~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sG 105 (622)
|..+++.+. -+.+|+.+...+ ....|. +.+.++++|+.|+++...-..|-+.|.+.++|+-.+.
T Consensus 19 a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 19 AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFE-EDLDGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 444444443 246777766553 112343 6688999999999999999999999999999876554
No 75
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=69.15 E-value=2.9 Score=31.97 Aligned_cols=20 Identities=20% Similarity=0.624 Sum_probs=17.3
Q ss_pred cCChhhHHHHHHHhhhcccc
Q 006996 191 RRKDEDIDQYGRRIYDHVFG 210 (622)
Q Consensus 191 ~~~~~~~~~~a~~lf~~~F~ 210 (622)
++..+.|++||+.+|+.+|.
T Consensus 26 P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 26 PRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp -SSHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHhC
Confidence 56789999999999999985
No 76
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=67.52 E-value=6.1 Score=40.06 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHhcCc
Q 006996 342 NIVHAVATTNAIIAGLIVIEAIKVLLKDT 370 (622)
Q Consensus 342 nIIPAIATTnAiVAGl~vlE~~Kvl~~~~ 370 (622)
...|+++++++++|++++.|++|+|.+..
T Consensus 178 ~~~~~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 178 AEAGVLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999999999999874
No 77
>PRK07411 hypothetical protein; Validated
Probab=63.07 E-value=10 Score=41.85 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=34.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCccc--ceeeEeecccccceeecccCCCCCCCCcccCC
Q 006996 345 HAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCS 404 (622)
Q Consensus 345 PAIATTnAiVAGl~vlE~~Kvl~~~~~~--~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~ 404 (622)
+-+.+|.++|+++++.|++|+|.|..+. .|..+++......+ .-+..++|.|.+|.
T Consensus 199 gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~----~~~~~~~~~c~~i~ 256 (390)
T PRK07411 199 GVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFR----ELKLRPNPERPVIE 256 (390)
T ss_pred CcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCcee----EEeccCCCCCCccc
Confidence 4566788999999999999999986432 23333332211111 11234567888765
No 78
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=62.56 E-value=37 Score=32.96 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhh-----ccCCEEEEecCCHHHHHHHHHHHHHcCCCEE
Q 006996 38 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFF-----KQFNVVLNGLDNLDARRHVNRLCLAADVPLV 102 (622)
Q Consensus 38 aevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~-----~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI 102 (622)
++.+++.+++.+|+++|..++.-..+.......+ .+.|+|+.++..+.--.++.+.....+.+++
T Consensus 61 ~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~ 130 (172)
T PF03808_consen 61 LEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAGVI 130 (172)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEE
Confidence 4678899999999999997654432222223333 5899999999999999999999888888743
No 79
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=61.50 E-value=18 Score=32.50 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=39.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 408 LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 408 ~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
..++|+. .-||++|-.. +.+++++... ..+++|+ |..|.+ -.++|+++ ||..|++|.+-
T Consensus 17 ~~L~V~~-~~TVg~LK~l-ImQ~f~V~P~----dQkL~~d-G~~L~D---------DsrTLssy--Gv~sgSvl~Ll 75 (107)
T cd01795 17 KALLVSA-NQTLKELKIQ-IMHAFSVAPF----DQNLSID-GKILSD---------DCATLGTL--GVIPESVILLK 75 (107)
T ss_pred ceEEeCc-cccHHHHHHH-HHHHhcCCcc----cceeeec-Cceecc---------CCccHHhc--CCCCCCEEEEE
Confidence 4567774 5699999887 5778887542 3345554 433322 16899999 99999987643
No 80
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=60.89 E-value=32 Score=29.47 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=43.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeCC
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQ 487 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~~ 487 (622)
..++. ..+|+++|-++ +...+|..+..... .+|+.....-.. -++-.++|..+ |+.+|..|.|.|.+
T Consensus 16 ekr~~-~~~Tv~~lK~k-l~~~~G~~~~~mrL---~l~~~~~~~~~~-----l~~d~~~L~~y--~~~dg~~IhVvD~~ 82 (84)
T cd01789 16 EKKYS-RGLTIAELKKK-LELVVGTPASSMRL---QLFDGDDKLVSK-----LDDDDALLGSY--PVDDGCRIHVIDVS 82 (84)
T ss_pred eEecC-CCCcHHHHHHH-HHHHHCCCccceEE---EEEcCCCCeEee-----cCCCccEeeec--cCCCCCEEEEEeCC
Confidence 34455 57999999998 57788887644221 134433110000 12346789999 89999999999864
No 81
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=59.98 E-value=3 Score=35.75 Aligned_cols=45 Identities=31% Similarity=0.572 Sum_probs=22.8
Q ss_pred CCCccccccCCCCCCCCCcccccCCCCCceeeeh-h-hhHHHHHHHhC
Q 006996 119 GKTECYECQPKPAPKTYPVCTITSTPSKFVHCIV-W-AKDLLFAKLFG 164 (622)
Q Consensus 119 ~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~-w-a~~~~f~~lF~ 164 (622)
|.++||+|+++..+...|.|...+.-......|. + |.+ ..+.+-|
T Consensus 1 g~~pC~rCl~p~~~~~~~~C~~~GVlg~~~giigslqA~e-aik~l~g 47 (84)
T PF05237_consen 1 GKTPCYRCLFPEPPESAPTCAEAGVLGPVVGIIGSLQANE-AIKLLLG 47 (84)
T ss_dssp -T---HHHHHTTSS--TTSSSTS-B-HHHHHHHHHHHHHH-HHHHHCT
T ss_pred CCCceehhcCCCCCccCCCccccccccchHHHHHHHHHHH-HHHHHHh
Confidence 4789999998776778888987766544433332 1 232 4555554
No 82
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=58.83 E-value=13 Score=40.46 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=39.8
Q ss_pred CCCeEEEEeccCCCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEe
Q 006996 50 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 104 (622)
Q Consensus 50 P~v~I~a~~~~i~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~s 104 (622)
...++.+...++.+..--.++++++|+||+|+-.. .-..|-++|.++++++|+.
T Consensus 44 ~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 44 LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 45677777777765443467899999999999877 5668899999999999994
No 83
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=58.54 E-value=7.2 Score=38.88 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.6
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHH
Q 006996 342 NIVHAVATTNAIIAGLIVIEAIKVL 366 (622)
Q Consensus 342 nIIPAIATTnAiVAGl~vlE~~Kvl 366 (622)
.+.++++++.++||++++.|++|+|
T Consensus 178 ~~~~~~~~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 178 ATAGVIGPVVGVIGSLQALEALKLL 202 (202)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhC
Confidence 4677899999999999999999985
No 84
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=58.29 E-value=18 Score=40.00 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=45.0
Q ss_pred eEEEEeccCCCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecccc
Q 006996 53 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 53 ~I~a~~~~i~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
+++++.-++.+.....++++++|+||+|+.-.-.+ .+-++|.+.++++++.....
T Consensus 48 ~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 48 KVEALQVDAADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred cceeEEecccChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 77788777766555568899999999999987766 67789999999999987654
No 85
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.68 E-value=56 Score=31.72 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhCCCCeEEEE-eccCCCCCch--hhhh--ccCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Q 006996 38 AKVARDAVLKFRPQMSITAH-HANVKDPKFN--VEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 103 (622)
Q Consensus 38 aevAa~~l~~~NP~v~I~a~-~~~i~~~~~~--~~f~--~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~ 103 (622)
++.+++++++.+|+++|..+ +......... .+.+ .+.|+|+.|+-.+.-..++.+.....+.+++-
T Consensus 59 ~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~ 129 (171)
T cd06533 59 LEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKDRLPVPVAI 129 (171)
T ss_pred HHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 34566789999999999984 4444322211 1222 48999999999999999998887777666543
No 86
>PRK08328 hypothetical protein; Provisional
Probab=56.57 E-value=12 Score=38.06 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCc
Q 006996 344 VHAVATTNAIIAGLIVIEAIKVLLKDT 370 (622)
Q Consensus 344 IPAIATTnAiVAGl~vlE~~Kvl~~~~ 370 (622)
.|.+++|++|||++++.|++|+|.+..
T Consensus 183 ~~~~~~~~~ii~~~~a~e~~k~l~g~~ 209 (231)
T PRK08328 183 FPILGATAGVIGSIQAMEVIKLITGYG 209 (231)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence 466889999999999999999999753
No 87
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=56.52 E-value=9.6 Score=38.44 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=24.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcC
Q 006996 343 IVHAVATTNAIIAGLIVIEAIKVLLKD 369 (622)
Q Consensus 343 IIPAIATTnAiVAGl~vlE~~Kvl~~~ 369 (622)
..++++.|.++||++++.|++|+|.+.
T Consensus 183 ~~gv~~~~~~~i~~~~a~ealk~l~~~ 209 (212)
T PRK08644 183 GNPLMAPRVNIAAAHQANLVLRLILGE 209 (212)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhCC
Confidence 567889999999999999999999874
No 88
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=55.52 E-value=59 Score=33.29 Aligned_cols=42 Identities=12% Similarity=0.296 Sum_probs=35.6
Q ss_pred CchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecc
Q 006996 65 KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 106 (622)
Q Consensus 65 ~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt 106 (622)
.|....+.++++||.|+|+.+.-..|-..|...++++..+.-
T Consensus 77 ~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 77 NYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 345567889999999999999999999999999998876544
No 89
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=55.24 E-value=15 Score=39.94 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=24.3
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHhcCc
Q 006996 343 IVHAVATTNAIIAGLIVIEAIKVLLKDT 370 (622)
Q Consensus 343 IIPAIATTnAiVAGl~vlE~~Kvl~~~~ 370 (622)
..+.+..+.++|+++++.|++|+|.|..
T Consensus 187 ~~gv~g~~~~~~g~~~a~e~ik~l~g~~ 214 (355)
T PRK05597 187 QAGVLGPVVGVVGSAMAMEALKLITGVG 214 (355)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 3557788999999999999999999864
No 90
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=53.93 E-value=49 Score=27.23 Aligned_cols=60 Identities=23% Similarity=0.482 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
+..++++ ..+|+++|-.. +.++.|+.+.. .+++|. +..|+ +-.++|++. |+++|+.|.+.
T Consensus 11 ~~~l~v~-~~~TV~~lK~~-I~~~~gip~~~----q~Li~~-Gk~L~---------D~~~~L~~~--gi~~~~~l~l~ 70 (71)
T cd01796 11 TFSLDVD-PDLELENFKAL-CEAESGIPASQ----QQLIYN-GRELV---------DNKRLLALY--GVKDGDLVVLR 70 (71)
T ss_pred EEEEEEC-CcCCHHHHHHH-HHHHhCCCHHH----eEEEEC-CeEcc---------CCcccHHHc--CCCCCCEEEEe
Confidence 4567777 46899999998 57777865432 233332 22121 113568888 99999988763
No 91
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=53.68 E-value=49 Score=27.18 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=37.5
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGI--NFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~--~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
....++++. ..|+++|-..| .++.|+ ... ..+++|. |..|+ + +++|+++ |+++|+.|.+
T Consensus 11 ~~~~l~v~~-~~TV~~lK~~i-~~~~~i~~~~~----~q~L~~~-G~~L~--------d--~~~L~~~--~i~~~~~i~~ 71 (77)
T cd01805 11 QTFPIEVDP-DDTVAELKEKI-EEEKGCDYPPE----QQKLIYS-GKILK--------D--DTTLEEY--KIDEKDFVVV 71 (77)
T ss_pred CEEEEEECC-CCcHHHHHHHH-HHhhCCCCChh----HeEEEEC-CEEcc--------C--CCCHHHc--CCCCCCEEEE
Confidence 345677774 68999999984 666676 321 1233443 22222 1 3679999 9999987765
Q ss_pred e
Q 006996 484 E 484 (622)
Q Consensus 484 ~ 484 (622)
.
T Consensus 72 ~ 72 (77)
T cd01805 72 M 72 (77)
T ss_pred E
Confidence 3
No 92
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=52.89 E-value=47 Score=27.63 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-+. +....|+.... .+++|.-. .+ .-+++|+++ ++.+|+.|.+.
T Consensus 9 ~~~l~v~-~~~TV~~lK~~-i~~~~gip~~~----q~L~~~G~-~L----------~d~~tL~~~--~i~~g~~l~v~ 67 (76)
T cd01800 9 MLNFTLQ-LSDPVSVLKVK-IHEETGMPAGK----QKLQYEGI-FI----------KDSNSLAYY--NLANGTIIHLQ 67 (76)
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCCCHHH----EEEEECCE-Ec----------CCCCcHHHc--CCCCCCEEEEE
Confidence 5568888 46899999998 46677764422 13344321 11 124789999 89999887653
No 93
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=50.84 E-value=72 Score=31.36 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhh-----ccCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Q 006996 37 KAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFF-----KQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 103 (622)
Q Consensus 37 KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~-----~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~ 103 (622)
-++.|++++++.+|+++|..++..+.+.. ..+.. .+.|+|+.|+-.+.-..++.+.....+.+++-
T Consensus 60 v~~~~~~~l~~~yP~l~i~g~~g~f~~~~-~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 60 VLQQLKVKLIKEYPKLKIVGAFGPLEPEE-RKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMI 130 (177)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChHH-HHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEEE
Confidence 45688999999999999998866664321 12222 58999999999999999998876666666553
No 94
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=50.31 E-value=49 Score=37.21 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=59.4
Q ss_pred CccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe--cC
Q 006996 5 RQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG--LD 82 (622)
Q Consensus 5 GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a--lD 82 (622)
++++|+++|-|. ..|.+ =...|++.+.+.++.++|++...+ .+-++++|+||++ ..
T Consensus 28 ~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~Ttdr-------~eAl~gADfVi~~irvG 85 (437)
T cd05298 28 PLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYTTDP-------EEAFTDADFVFAQIRVG 85 (437)
T ss_pred CCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEECCH-------HHHhCCCCEEEEEeeeC
Confidence 467888888554 22222 134566666777778888887432 4678999999999 56
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccceEE
Q 006996 83 NLDARRHVNRLCLAADVPLVESGTTGFLGQVT 114 (622)
Q Consensus 83 n~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~ 114 (622)
..++|..--+.+.++|+ +-.-|.|..|...
T Consensus 86 g~~~r~~De~Ip~kyGi--~gqET~G~GG~~~ 115 (437)
T cd05298 86 GYAMREQDEKIPLKHGV--VGQETCGPGGFAY 115 (437)
T ss_pred CchHHHHHHhHHHHcCc--ceecCccHHHHHH
Confidence 67889888889999996 4335666666443
No 95
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=49.16 E-value=28 Score=35.99 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=32.2
Q ss_pred hhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecccccc
Q 006996 69 EFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 110 (622)
Q Consensus 69 ~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~ 110 (622)
+++..+|+|++++ .+.+-..+-..|.++++|++-+ ++|+.
T Consensus 56 ~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~s 95 (257)
T PRK00048 56 AVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGFT 95 (257)
T ss_pred HhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCCC
Confidence 4566899999998 6666678889999999999944 77765
No 96
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=49.16 E-value=47 Score=26.70 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=37.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 408 LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 408 ~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
..++++ ...|+.+|-+.| .+..|+.... .+++|. +..++ -.++|+++ |+++|+.|.+.
T Consensus 12 ~~i~v~-~~~tv~~lK~~i-~~~~gi~~~~----q~L~~~-g~~l~----------d~~~L~~~--~i~~g~~l~v~ 69 (71)
T cd01812 12 HDLSIS-SQATFGDLKKML-APVTGVEPRD----QKLIFK-GKERD----------DAETLDMS--GVKDGSKVMLL 69 (71)
T ss_pred EEEEEC-CCCcHHHHHHHH-HHhhCCChHH----eEEeeC-CcccC----------ccCcHHHc--CCCCCCEEEEe
Confidence 346666 468999999984 6677765532 133343 22221 14679999 99999988774
No 97
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=48.57 E-value=12 Score=42.33 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=45.5
Q ss_pred ccCCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHH
Q 006996 302 LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAG 356 (622)
Q Consensus 302 l~FDKDD~~h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAG 356 (622)
+.|.+-+-...-|++-..-||+..-.-.+-++-..-.+|++|.|+.-|-|++++.
T Consensus 243 ~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~ 297 (603)
T KOG2013|consen 243 LDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQS 297 (603)
T ss_pred cCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhh
Confidence 3444444445789999999999999988888888889999999999999999983
No 98
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=48.43 E-value=58 Score=26.43 Aligned_cols=59 Identities=20% Similarity=0.447 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+++|-+.+ .++.|+.+.. .+++|. +..++ -.++|+++ ++.+|+.|.+.
T Consensus 12 ~~~~~v~-~~~tv~~lK~~i-~~~~g~~~~~----qrL~~~-g~~L~----------d~~tl~~~--~i~~g~~i~l~ 70 (76)
T cd01806 12 EIEIDIE-PTDKVERIKERV-EEKEGIPPQQ----QRLIYS-GKQMN----------DDKTAADY--KLEGGSVLHLV 70 (76)
T ss_pred EEEEEEC-CCCCHHHHHHHH-hHhhCCChhh----EEEEEC-CeEcc----------CCCCHHHc--CCCCCCEEEEE
Confidence 4567777 468999999984 6666765542 223343 21121 24689999 89999887653
No 99
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=46.95 E-value=32 Score=27.92 Aligned_cols=58 Identities=21% Similarity=0.437 Sum_probs=37.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCC-cceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINF-PLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~-~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.+.+. .+.|++.|++.+ .++.|+.. ..+ ++.|+ |+.+ +.++++.++ |+.+|+.+.|
T Consensus 12 ~~~~~v~-~~~~~~~l~~~~-~~~~~i~~~~~~----~l~fd-G~~L----------~~~~T~~~~--~ied~d~Idv 70 (72)
T PF11976_consen 12 EIKFKVK-PTTTVSKLIEKY-CEKKGIPPEESI----RLIFD-GKRL----------DPNDTPEDL--GIEDGDTIDV 70 (72)
T ss_dssp EEEEEEE-TTSCCHHHHHHH-HHHHTTTT-TTE----EEEET-TEEE-----------TTSCHHHH--T-STTEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHHH-HHhhCCCccceE----EEEEC-CEEc----------CCCCCHHHC--CCCCCCEEEE
Confidence 4566666 467999999985 66778776 222 23332 2222 335789999 9999998876
No 100
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=46.84 E-value=56 Score=26.51 Aligned_cols=59 Identities=12% Similarity=0.349 Sum_probs=38.8
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
..+.++++. ..|++++-+. +.++.|+.... .+++|. +..|+ + +++|++. |+++|+.|.+
T Consensus 9 ~~~~~~v~~-~~tV~~lK~~-i~~~~gi~~~~----q~Li~~-G~~L~--------d--~~~l~~~--~i~~~stl~l 67 (70)
T cd01798 9 HTFPVEVDP-DTDIKQLKEV-VAKRQGVPPDQ----LRVIFA-GKELR--------N--TTTIQEC--DLGQQSILHA 67 (70)
T ss_pred CEEEEEECC-CChHHHHHHH-HHHHHCCCHHH----eEEEEC-CeECC--------C--CCcHHHc--CCCCCCEEEE
Confidence 356678884 6899999998 46777765432 223343 22221 1 4778898 9999998865
No 101
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=45.94 E-value=18 Score=38.20 Aligned_cols=57 Identities=25% Similarity=0.388 Sum_probs=36.1
Q ss_pred hcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecccccceeecccCCCCCCCCc
Q 006996 340 AGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSC 400 (622)
Q Consensus 340 AGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~~~~~~~~~~~~~~pn~~C 400 (622)
-|----++.||-++|||+.|.-.+|+|-+-.+-. -|+-. +...- +-|.....|||.|
T Consensus 256 eGVCAASLPTTMgvvAG~LVqN~LK~LLNFGeVS--~YlGY-Nal~D-FFP~msmkPNPqC 312 (422)
T KOG2336|consen 256 EGVCAASLPTTMGVVAGFLVQNSLKFLLNFGEVS--PYLGY-NALSD-FFPTMSMKPNPQC 312 (422)
T ss_pred cceeeecCcchHHHHHHHHHHHHHHHHhhccccc--hhhcc-hhHHh-hCccccCCCCCCC
Confidence 4555567889999999999999999998643211 11211 11111 2244456899988
No 102
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=45.44 E-value=62 Score=26.63 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=38.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+++|-+. +.++.|+.... .+++|. |..|+ + .++|++. |+.+|+.|.+
T Consensus 12 ~~~l~v~-~~~tV~~lK~~-i~~~~gi~~~~----q~L~~~-G~~L~--------d--~~~L~~~--~i~~~~~l~l 69 (74)
T cd01807 12 ECSLQVS-EKESVSTLKKL-VSEHLNVPEEQ----QRLLFK-GKALA--------D--DKRLSDY--SIGPNAKLNL 69 (74)
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCCCHHH----eEEEEC-CEECC--------C--CCCHHHC--CCCCCCEEEE
Confidence 4567777 46899999998 46777765532 223332 22121 1 4789999 9999998755
No 103
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=43.58 E-value=68 Score=34.52 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHhhCCCCeEEEEeccCC-CCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEec-cccccceEEEEeCCCCc
Q 006996 45 VLKFRPQMSITAHHANVK-DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG-TTGFLGQVTVHVKGKTE 122 (622)
Q Consensus 45 l~~~NP~v~I~a~~~~i~-~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sG-t~G~~G~v~vi~p~~t~ 122 (622)
+....|++++.....+-. +..-..+++.+.|+||.|+.+-.++.++..+ ...++.+||-+ ..-+.-.+...+|...+
T Consensus 20 lL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~-~~~g~~VIDlSadfRl~~~~~yglPEln~ 98 (310)
T TIGR01851 20 RLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLV-DNPNTCIIDASTAYRTADDWAYGFPELAP 98 (310)
T ss_pred HHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHH-HhCCCEEEECChHHhCCCCCeEEccccCH
Confidence 344569999888765531 1111245668999999999999999888765 56788999855 33455455566676544
Q ss_pred c
Q 006996 123 C 123 (622)
Q Consensus 123 C 123 (622)
.
T Consensus 99 ~ 99 (310)
T TIGR01851 99 G 99 (310)
T ss_pred H
Confidence 3
No 104
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=42.82 E-value=29 Score=37.82 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhcCcccceeeEeecccccceeecccCCCCCCCCcccCCcc
Q 006996 352 AIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSET 406 (622)
Q Consensus 352 AiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~~ 406 (622)
.+|..|+.+|++|++.+-.+.+.-.-+-.. .+..-+.......+.++|.+|+.+
T Consensus 234 GviG~mQALE~iKli~~~~~~~s~~lllfd-g~~~~~r~irlR~r~~~C~~Cg~n 287 (427)
T KOG2017|consen 234 GVIGCMQALETIKLIAGIGESLSGRLLLFD-GLSGHFRTIRLRSRRPKCAVCGKN 287 (427)
T ss_pred hhhhHHHHHHHHHHHHccCccCCcceEEEe-cccceeEEEEeccCCCCCcccCCC
Confidence 357889999999999986543321111111 111123334566788999999963
No 105
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=41.51 E-value=34 Score=37.77 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=22.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCc
Q 006996 345 HAVATTNAIIAGLIVIEAIKVLLKDT 370 (622)
Q Consensus 345 PAIATTnAiVAGl~vlE~~Kvl~~~~ 370 (622)
..+..+.++|+++++.|++|+|.|..
T Consensus 207 gv~g~~~~~~g~~~a~e~ik~l~g~~ 232 (392)
T PRK07878 207 GVLGVLCASIGSIMGTEAIKLITGIG 232 (392)
T ss_pred CccchHHHHHHHHHHHHHHHHHhCCC
Confidence 35777899999999999999999864
No 106
>PTZ00044 ubiquitin; Provisional
Probab=39.45 E-value=1.1e+02 Score=25.13 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+..++++ ...|+.+|-.. +.++.|+.+.. +.++++.|- ..++|+++ ++.+|+.+.+
T Consensus 11 ~~~~l~v~-~~~tv~~lK~~-i~~~~gi~~~~q~L~~~g~~L~-----------------d~~~l~~~--~i~~~~~i~l 69 (76)
T PTZ00044 11 KKQSFNFE-PDNTVQQVKMA-LQEKEGIDVKQIRLIYSGKQMS-----------------DDLKLSDY--KVVPGSTIHM 69 (76)
T ss_pred CEEEEEEC-CCCcHHHHHHH-HHHHHCCCHHHeEEEECCEEcc-----------------CCCcHHHc--CCCCCCEEEE
Confidence 34567777 46799999998 57777865532 233333321 14568888 8999987665
Q ss_pred e
Q 006996 484 E 484 (622)
Q Consensus 484 ~ 484 (622)
.
T Consensus 70 ~ 70 (76)
T PTZ00044 70 V 70 (76)
T ss_pred E
Confidence 3
No 107
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=37.97 E-value=43 Score=30.29 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=30.0
Q ss_pred hhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecc
Q 006996 69 EFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 106 (622)
Q Consensus 69 ~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt 106 (622)
+-+.+.|+||.|+++-.++.+...+ ...++++|+.+.
T Consensus 62 ~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~ 98 (121)
T PF01118_consen 62 EELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSG 98 (121)
T ss_dssp HHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSS
T ss_pred hHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCH
Confidence 4468999999999998888887777 788999998654
No 108
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=37.25 E-value=2.6e+02 Score=27.97 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=34.8
Q ss_pred chhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006996 66 FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 107 (622)
Q Consensus 66 ~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~ 107 (622)
|....+.++++||.|+|+.+.-..+-..|...++|+-.++-.
T Consensus 62 ~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 62 FDADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred CCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence 334668899999999999988889999999999998665543
No 109
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=36.79 E-value=62 Score=34.10 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=36.5
Q ss_pred ccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEec
Q 006996 3 SERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGL 81 (622)
Q Consensus 3 ~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~al 81 (622)
..|+++|+|+|.+ ..|++..++.+....|.+.+.... .. .+.+.++|+||+|+
T Consensus 148 ~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~------~~-~~~~~~aDiVInaT 200 (284)
T PRK12549 148 TLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS------DL-AAALAAADGLVHAT 200 (284)
T ss_pred HcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc------ch-HhhhCCCCEEEECC
Confidence 4578888888765 368888888888777765543321 11 23457899999995
No 110
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=36.39 E-value=93 Score=24.90 Aligned_cols=59 Identities=24% Similarity=0.419 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
...+.++. ..|+.+|-+++ .+..|+.... .+++|. +..++ -.++|++. |+++|+.|.+.
T Consensus 12 ~~~~~v~~-~~tv~~lK~~i-~~~~gi~~~~----q~L~~~-g~~L~----------d~~~L~~~--~i~~~~~l~l~ 70 (72)
T cd01809 12 THTFTVEE-EITVLDLKEKI-AEEVGIPVEQ----QRLIYS-GRVLK----------DDETLSEY--KVEDGHTIHLV 70 (72)
T ss_pred EEEEEECC-CCcHHHHHHHH-HHHHCcCHHH----eEEEEC-CEECC----------CcCcHHHC--CCCCCCEEEEE
Confidence 34567774 57999999984 6677764322 234443 22121 14689999 99999988763
No 111
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=36.37 E-value=65 Score=24.87 Aligned_cols=54 Identities=22% Similarity=0.529 Sum_probs=33.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCc
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGT 479 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~ 479 (622)
...+.++. ..|+++|... +.+++|+.... .+++|. +..+. + .++|+++ |+++|+
T Consensus 11 ~~~~~v~~-~~tv~~lk~~-i~~~~~~~~~~----~~L~~~-g~~L~--------d--~~tL~~~--~i~~~~ 64 (64)
T smart00213 11 TITLEVKP-SDTVSELKEK-IAELTGIPVEQ----QRLIYK-GKVLE--------D--DRTLADY--NIQDGS 64 (64)
T ss_pred eEEEEECC-CCcHHHHHHH-HHHHHCCCHHH----EEEEEC-CEECC--------C--CCCHHHc--CCcCCC
Confidence 44567774 6799999998 57778875432 123332 11121 1 4688888 888874
No 112
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=35.38 E-value=41 Score=33.44 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCcc
Q 006996 347 VATTNAIIAGLIVIEAIKVLLKDTD 371 (622)
Q Consensus 347 IATTnAiVAGl~vlE~~Kvl~~~~~ 371 (622)
++.++++++|+++.|++|++.+..+
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~~~~~~ 179 (197)
T cd01492 155 LAPVAAVVGGILAQDVINALSKRES 179 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCC
Confidence 7788889999999999999998653
No 113
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=35.34 E-value=1.7e+02 Score=22.76 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEee
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVED 485 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D 485 (622)
...+.++ ...|+++|-+.| .+.+|+....+ +++|.. ..+ .-.++|.++ ++.+|+.+.|.+
T Consensus 9 ~~~~~~~-~~~ti~~lK~~i-~~~~~~~~~~~----~l~~~g-~~l----------~d~~~l~~~--~v~~~~~i~v~~ 68 (69)
T cd01769 9 TFELEVS-PDDTVAELKAKI-AAKEGVPPEQQ----RLIYAG-KIL----------KDDKTLSDY--GIQDGSTLHLVL 68 (69)
T ss_pred EEEEEEC-CCChHHHHHHHH-HHHHCcChHHE----EEEECC-cCC----------CCcCCHHHC--CCCCCCEEEEEE
Confidence 3456666 478999999984 66777654432 234432 112 124568888 899999888765
No 114
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=35.29 E-value=43 Score=33.32 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=33.2
Q ss_pred HHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCccc
Q 006996 320 NIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDK 372 (622)
Q Consensus 320 NLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~ 372 (622)
|-.++..+||...- .+.+.-|.+.- +--++++||++++.|++|+|.|..+.
T Consensus 131 n~~c~~~~ip~i~~-~~~G~~G~v~~-~~p~~~~~~~~~~~e~~k~l~~~~~~ 181 (198)
T cd01485 131 NDVCRKHHIPFISC-ATYGLIGYAFF-DFPIAAFLGGVVAQEAIKSISGKFTP 181 (198)
T ss_pred HHHHHHcCCCEEEE-EeecCEEEEEE-chhHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34466677776432 22333444331 12589999999999999999987543
No 115
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=35.29 E-value=1.1e+02 Score=24.65 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-+. +.++.|+.+.. .+++|. +..++ ..++|+++ |+.+|+.+.+.
T Consensus 12 ~~~~~v~-~~~tV~~lK~~-i~~~~g~~~~~----q~L~~~-g~~L~----------d~~~L~~~--~i~~~~~i~l~ 70 (76)
T cd01803 12 TITLEVE-PSDTIENVKAK-IQDKEGIPPDQ----QRLIFA-GKQLE----------DGRTLSDY--NIQKESTLHLV 70 (76)
T ss_pred EEEEEEC-CcCcHHHHHHH-HHHHhCCCHHH----eEEEEC-CEECC----------CCCcHHHc--CCCCCCEEEEE
Confidence 3457777 46899999998 46677765422 123332 21121 14689998 89999877653
No 116
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=35.29 E-value=95 Score=25.53 Aligned_cols=57 Identities=7% Similarity=0.172 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCc--ceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFP--LIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~--~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
+..++++. ..|+.++-..| .++.|+... .+.++++. |+ + .++|++. |+.+|+.|.+.
T Consensus 10 ~~~l~v~~-~~tV~~lK~~I-~~~~gi~~~~q~L~~~G~~-------L~--------D--~~tL~~~--~i~~~~tl~l~ 68 (74)
T cd01810 10 SSIYEVQL-TQTVATLKQQV-SQRERVQADQFWLSFEGRP-------ME--------D--EHPLGEY--GLKPGCTVFMN 68 (74)
T ss_pred EEEEEECC-cChHHHHHHHH-HHHhCCCHHHeEEEECCEE-------CC--------C--CCCHHHc--CCCCCCEEEEE
Confidence 45677774 67999999985 666676442 23333333 22 1 3678898 99999988664
No 117
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=33.74 E-value=1.1e+02 Score=27.31 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=38.0
Q ss_pred cccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 405 ETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 405 ~~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
..++.++++ ...|+.+|-++| .++.|+.+.. .+++|. |..|+ + +++|++. ++++|+.|.+
T Consensus 37 G~~~~leV~-~~~TV~~lK~kI-~~~~gip~~~----QrLi~~-Gk~L~--------D--~~tL~dy--~I~~~stL~l 96 (103)
T cd01802 37 GTCFELRVS-PFETVISVKAKI-QRLEGIPVAQ----QHLIWN-NMELE--------D--EYCLNDY--NISEGCTLKL 96 (103)
T ss_pred CCEEEEEeC-CCCcHHHHHHHH-HHHhCCChHH----EEEEEC-CEECC--------C--CCcHHHc--CCCCCCEEEE
Confidence 445677887 468999999985 6666764421 123332 22222 1 3678898 8999987765
No 118
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=33.12 E-value=1.1e+02 Score=32.23 Aligned_cols=80 Identities=16% Similarity=0.291 Sum_probs=53.0
Q ss_pred cccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccC-CCCCchhhhh----ccCCEEEEecCCHHHHHHHHHHHHHcC
Q 006996 24 RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV-KDPKFNVEFF----KQFNVVLNGLDNLDARRHVNRLCLAAD 98 (622)
Q Consensus 24 RQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i-~~~~~~~~f~----~~~DlVi~alDn~~aR~~vn~~c~~~~ 98 (622)
|+.++-....|.. |+..+.++....|++.+..+.-.. ....-..+.+ .+--+|+.++=+.+.|.++.+.|..++
T Consensus 5 ~~i~~VSDstGeT-Ae~v~~A~l~QF~~~~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~~elr~~l~~~~~~~~ 83 (269)
T PRK05339 5 RHVFLVSDSTGET-AETVGRAALSQFPNVEFEEHRYPFVRTEEKADEVLEEINAERPIVFYTLVDPELREILEERCAEFG 83 (269)
T ss_pred eEEEEEeCCHHHH-HHHHHHHHHHhCCCCCeeEEEeCCcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 4444544556666 666666666666788766443332 2211112222 245599999999999999999999999
Q ss_pred CCEEEe
Q 006996 99 VPLVES 104 (622)
Q Consensus 99 iPlI~s 104 (622)
+|.++-
T Consensus 84 i~~vdl 89 (269)
T PRK05339 84 IPCIDI 89 (269)
T ss_pred CCEEec
Confidence 999985
No 119
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=32.69 E-value=1e+02 Score=25.02 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=35.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.++++ ...|+++|-+.| .++.|+.... -+++|. +..|+ + +++|++. |+++|+.|.+
T Consensus 13 ~l~v~-~~~TV~~lK~~I-~~~~~i~~~~----~~Li~~-Gk~L~--------d--~~tL~~~--~i~~~stl~l 68 (71)
T cd01808 13 EIEIA-EDASVKDFKEAV-SKKFKANQEQ----LVLIFA-GKILK--------D--TDTLTQH--NIKDGLTVHL 68 (71)
T ss_pred EEEEC-CCChHHHHHHHH-HHHhCCCHHH----EEEEEC-CeEcC--------C--CCcHHHc--CCCCCCEEEE
Confidence 56776 468999999985 6666754322 134552 21121 1 3579999 9999988765
No 120
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=32.60 E-value=1.2e+02 Score=25.03 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=37.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
+..++++. ..|+.++-.+| .++.|+.... .+++|. +..|+ -.++|++. ++.+|+.|.+.
T Consensus 10 ~~~l~v~~-~~tV~~lK~~i-~~~~gip~~~----q~Li~~-Gk~L~----------D~~tL~~~--~i~~~~tl~l~ 68 (74)
T cd01793 10 THTLEVTG-QETVSDIKAHV-AGLEGIDVED----QVLLLA-GVPLE----------DDATLGQC--GVEELCTLEVA 68 (74)
T ss_pred EEEEEECC-cCcHHHHHHHH-HhhhCCCHHH----EEEEEC-CeECC----------CCCCHHHc--CCCCCCEEEEE
Confidence 34677774 67999999984 6676754422 123332 21122 14778998 89999887653
No 121
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=32.08 E-value=1.2e+02 Score=31.78 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=50.0
Q ss_pred cCchHHHHHHHHHHhhCCCCeEEEEeccC-CCCCchhhh----hccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEe
Q 006996 33 VGQSKAKVARDAVLKFRPQMSITAHHANV-KDPKFNVEF----FKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 104 (622)
Q Consensus 33 IGk~KaevAa~~l~~~NP~v~I~a~~~~i-~~~~~~~~f----~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~s 104 (622)
.|.. |+.+++++....|+++++.+.-.. ....--.+. -.+-.+|+-++=+.+-|.++.+.|..+++|.++.
T Consensus 8 tGeT-Ae~v~~A~l~QF~~~~~~~~~~p~I~~~~~~~~il~~i~~~~~iV~~Tlv~~~lr~~l~~~~~~~~i~~~Dl 83 (255)
T PF03618_consen 8 TGET-AETVARAALAQFPDVEFEIHRFPFIRTEEQLDEILEEIKEENAIVFYTLVDPELREYLEEFCREHGIPCVDL 83 (255)
T ss_pred chHH-HHHHHHHHHHhCCCCceEEEECCCcCCHHHHHHHHHHHhccCCEEEEeCCCHHHHHHHHHHHHhcCCCEEec
Confidence 3444 666777777777888887765544 211111122 2345699999999999999999999999999985
No 122
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=31.68 E-value=95 Score=26.80 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=31.3
Q ss_pred cCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEeccccccc
Q 006996 73 QFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGFLG 111 (622)
Q Consensus 73 ~~DlVi~alDn-~~aR~~vn~~c~~~~iPlI~sGt~G~~G 111 (622)
..-+||-|.|- ...+..+-.+|..+++|++..++.--.|
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~eLG 63 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKELG 63 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHHHH
Confidence 56688888885 5588999999999999999988763333
No 123
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=31.04 E-value=1.4e+02 Score=24.98 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCC-CCcEEEE
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVT-NGTMLTV 483 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~-~g~~l~v 483 (622)
.++.+++.. .+|++++-.+ +.++.|+.+... ++ |.. ..+. .-.++|+++ |+. +|..+.+
T Consensus 13 ~t~~l~v~~-~~TV~~lK~k-I~~~~gip~~~Q----rL-~~G-~~L~---------dD~~tL~~y--gi~~~g~~~~l 72 (75)
T cd01799 13 VTIWLTVRP-DMTVAQLKDK-VFLDYGFPPAVQ----RW-VIG-QRLA---------RDQETLYSH--GIRTNGDSAFL 72 (75)
T ss_pred CeEEEEECC-CCcHHHHHHH-HHHHHCcCHHHE----EE-EcC-CeeC---------CCcCCHHHc--CCCCCCCEEEE
Confidence 355677874 7899999998 477778755321 22 432 1111 124679999 898 8887764
No 124
>PRK10637 cysG siroheme synthase; Provisional
Probab=28.82 E-value=2.1e+02 Score=32.34 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=33.7
Q ss_pred CchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEec
Q 006996 65 KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 105 (622)
Q Consensus 65 ~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sG 105 (622)
.|....+.++++||.|+|+.+.-..|-+.|...++++-.+-
T Consensus 64 ~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 64 PFDESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVD 104 (457)
T ss_pred CCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECC
Confidence 34456788999999999999988999999999988765443
No 125
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=28.44 E-value=2.1e+02 Score=29.95 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhCCCCeEEEEe-ccCCCCCchhhhh-----ccCCEEEEecCCHHHHHHHHHHHHHcCCCEE
Q 006996 38 AKVARDAVLKFRPQMSITAHH-ANVKDPKFNVEFF-----KQFNVVLNGLDNLDARRHVNRLCLAADVPLV 102 (622)
Q Consensus 38 aevAa~~l~~~NP~v~I~a~~-~~i~~~~~~~~f~-----~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI 102 (622)
++.|++.+++..|+++|..++ +.++...- ...+ .+.|+|+.++-.+.--.||.+.-.....++.
T Consensus 121 ~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~-~~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~~~~~~v~ 190 (253)
T COG1922 121 AEQAAAKLRAKYPGLKIVGSHDGYFDPEEE-EAIVERIAASGPDILLVGMGVPRQEIWIARNRQQLPVAVA 190 (253)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCCChhhH-HHHHHHHHhcCCCEEEEeCCCchhHHHHHHhHHhcCCceE
Confidence 567888899999999999887 55543322 2333 4899999999999988999887777665544
No 126
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=28.21 E-value=1.3e+02 Score=24.74 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=37.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
++.++++. ..|+.++-..| .++.|+.... .+++|. |..|+ -+++|++. ++.+|+.+.+
T Consensus 10 ~~~l~v~~-~~TV~~lK~~I-~~~~gi~~~~----q~Li~~-G~~L~----------D~~~l~~~--~i~~~~tv~~ 67 (70)
T cd01794 10 DVKLSVSS-KDTVGQLKKQL-QAAEGVDPCC----QRWFFS-GKLLT----------DKTRLQET--KIQKDYVVQV 67 (70)
T ss_pred EEEEEECC-cChHHHHHHHH-HHHhCCCHHH----eEEEEC-CeECC----------CCCCHHHc--CCCCCCEEEE
Confidence 45677774 67999999884 6666764422 234442 32232 14678887 8999988776
No 127
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=27.91 E-value=1.4e+02 Score=25.65 Aligned_cols=59 Identities=15% Similarity=0.371 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++|. ...||+.|.+.+ .++.|+... ..+++|+ |..+ ....++.++ ++.+|+++.|.
T Consensus 23 ~~~~~v~-~~~~l~~l~~~y-~~~~gi~~~----~~rf~f~-G~~L----------~~~~T~~~l--~m~d~d~I~v~ 81 (87)
T cd01763 23 EVFFKIK-RSTPLKKLMEAY-CQRQGLSMN----SVRFLFD-GQRI----------RDNQTPDDL--GMEDGDEIEVM 81 (87)
T ss_pred EEEEEEc-CCCHHHHHHHHH-HHHhCCCcc----ceEEEEC-CeEC----------CCCCCHHHc--CCCCCCEEEEE
Confidence 4566676 467999999985 566676543 2345554 3222 235788999 99999988775
No 128
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=27.41 E-value=2e+02 Score=23.92 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=37.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ .+.|+++|-+.| .++.|+..... +++|. +.-|+ + +++|++. |+++|+.+..
T Consensus 13 ~~~~~v~-~~~TV~~LK~~I-~~~~~~~~~~q----rLi~~-Gk~L~--------D--~~tL~~y--gi~~~stv~l 70 (73)
T cd01791 13 KVRVKCN-PDDTIGDLKKLI-AAQTGTRPEKI----VLKKW-YTIFK--------D--HISLGDY--EIHDGMNLEL 70 (73)
T ss_pred EEEEEeC-CCCcHHHHHHHH-HHHhCCChHHE----EEEeC-CcCCC--------C--CCCHHHc--CCCCCCEEEE
Confidence 3455666 467999999985 55557655332 44554 32222 1 4689999 9999987753
No 129
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.32 E-value=1.2e+02 Score=26.00 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=29.7
Q ss_pred cCCEEEEecCCH-HHHHHHHHHHHHcCCCEEEecccc
Q 006996 73 QFNVVLNGLDNL-DARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 73 ~~DlVi~alDn~-~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
+.-+||-|-|-. ..+..+-.+|..+++|++..++.-
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~ 63 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMK 63 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 566888888864 478899999999999999988753
No 130
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=25.58 E-value=1.4e+02 Score=25.09 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=36.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+.+|-+.| .++.|+....... ..+| .+..|+ + +++|+++ |+++|+.|.+
T Consensus 14 ~~~~~v~-~~~TV~~lK~~I-~~~~~i~~~~qrL--~~~~-~G~~L~--------D--~~tL~~~--gi~~gs~l~l 73 (80)
T cd01792 14 EFLVSLR-DSMTVSELKQQI-AQKIGVPAFQQRL--AHLD-SREVLQ--------D--GVPLVSQ--GLGPGSTVLL 73 (80)
T ss_pred EEEEEcC-CCCcHHHHHHHH-HHHhCCCHHHEEE--Eecc-CCCCCC--------C--CCCHHHc--CCCCCCEEEE
Confidence 3456666 367999999984 6666764432211 0133 222222 1 3579999 9999988755
No 131
>PHA00736 hypothetical protein
Probab=25.26 E-value=1e+02 Score=25.54 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=22.6
Q ss_pred HHhhhcccccchhhhHHHHHHHHHHHHHHHHhc
Q 006996 336 AKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK 368 (622)
Q Consensus 336 vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~ 368 (622)
+-.|||+ ||||.|--|-.-.|+.+..+-++.+
T Consensus 29 tykmagk-ipaii~giastf~lmfmdflplfwg 60 (79)
T PHA00736 29 TYKMAGK-IPAILVGIASTFTLMFMDFLPLFWG 60 (79)
T ss_pred HHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468997 5888877776667777777666554
No 132
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=25.18 E-value=2.4e+02 Score=31.60 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=59.3
Q ss_pred CccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe--cC
Q 006996 5 RQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG--LD 82 (622)
Q Consensus 5 GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a--lD 82 (622)
.+++|+++|-|. .-|.+ =...+++.+.+..+.++|++...+ .+-++++|+||++ ..
T Consensus 28 ~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~ttD~-------~~Al~gADfVi~~irvG 85 (425)
T cd05197 28 PISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKTMDL-------EDAIIDADFVINQFRVG 85 (425)
T ss_pred CCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEeCCH-------HHHhCCCCEEEEeeecC
Confidence 467888888553 21211 134566667778888888886432 4678999999999 56
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccceEEE
Q 006996 83 NLDARRHVNRLCLAADVPLVESGTTGFLGQVTV 115 (622)
Q Consensus 83 n~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~v 115 (622)
..++|..--+.+.++|+-= .-|.|-.|...-
T Consensus 86 g~~~r~~De~Iplk~G~~g--qeT~G~GG~~~a 116 (425)
T cd05197 86 GLTYREKDEQIPLKYGVIG--QETVGPGGTFSG 116 (425)
T ss_pred ChHHHHHHHhHHHHcCccc--ccccCcchhhhh
Confidence 6788888888899988644 566676664443
No 133
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=24.39 E-value=16 Score=36.31 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.5
Q ss_pred ccCccEE------EEE---eCCccCccccccccC
Q 006996 3 SERQLEA------IKI---DMDTIEVSNLNRQFL 27 (622)
Q Consensus 3 ~~GvG~I------~Iv---D~DtIe~SNLnRQfL 27 (622)
..|+|.+ +|| |++..+++|+|||++
T Consensus 127 a~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 127 AAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 4577777 889 999999999999984
No 134
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=23.75 E-value=1.2e+02 Score=35.63 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCc-ccceeeE--eecccccceeecccCCCCCCCCcccCCc
Q 006996 348 ATTNAIIAGLIVIEAIKVLLKDT-DKYRMTY--CLEHITKKMLLMPVEPYEPNKSCYVCSE 405 (622)
Q Consensus 348 ATTnAiVAGl~vlE~~Kvl~~~~-~~~r~~f--~~~~~~~~~~~~~~~~~~pn~~C~vC~~ 405 (622)
++|-|++|++++.|++|++.+.. ..-...+ +++.. +-....+..|.|.|. |..
T Consensus 281 Pat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleT----LE~~WH~vvkrPqC~-~~~ 336 (637)
T TIGR03693 281 LAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLAT----LEGGWHAFIKHPDAS-CEK 336 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccc----cccccccCCCCCCCC-CCC
Confidence 34889999999999999999742 1111111 22211 111345567788887 764
No 135
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=23.62 E-value=1.9e+02 Score=32.39 Aligned_cols=86 Identities=22% Similarity=0.211 Sum_probs=57.0
Q ss_pred CccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEec--C
Q 006996 5 RQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGL--D 82 (622)
Q Consensus 5 GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~al--D 82 (622)
++++|+++|-|. ...|++ =...+++.+.+.++.++|++.... .+-+.++|+||++. .
T Consensus 28 ~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~d~-------~~al~gadfVi~~~~vg 86 (419)
T cd05296 28 PVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTTDR-------REALEGADFVFTQIRVG 86 (419)
T ss_pred CCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeCCH-------HHHhCCCCEEEEEEeeC
Confidence 467888888774 333322 134566677777888888876432 46788999999984 4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccceE
Q 006996 83 NLDARRHVNRLCLAADVPLVESGTTGFLGQV 113 (622)
Q Consensus 83 n~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v 113 (622)
..++|..-.+..+++|+-- .-|.|..|..
T Consensus 87 ~~~~r~~de~i~~~~Gi~g--qET~G~GG~~ 115 (419)
T cd05296 87 GLEARALDERIPLKHGVIG--QETTGAGGFA 115 (419)
T ss_pred CcchhhhhhhhHHHcCCcc--ccCCCcchHH
Confidence 5567777777888887653 4566666643
No 136
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=23.48 E-value=5.2e+02 Score=24.67 Aligned_cols=35 Identities=9% Similarity=0.035 Sum_probs=27.0
Q ss_pred chhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCE
Q 006996 66 FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPL 101 (622)
Q Consensus 66 ~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPl 101 (622)
|....+.++|+||.|+|+.+.-..+-..|.. +.++
T Consensus 63 ~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~-~~~v 97 (157)
T PRK06719 63 FSNDDIKDAHLIYAATNQHAVNMMVKQAAHD-FQWV 97 (157)
T ss_pred cChhcCCCceEEEECCCCHHHHHHHHHHHHH-CCcE
Confidence 3445578999999999999988888888876 3443
No 137
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=23.36 E-value=3.4e+02 Score=27.01 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=28.5
Q ss_pred hhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEe
Q 006996 68 VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 104 (622)
Q Consensus 68 ~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~s 104 (622)
...+.++|+||.|+++.+.-..|-..| ..++++-.+
T Consensus 65 ~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~~ 100 (202)
T PRK06718 65 PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNVI 100 (202)
T ss_pred hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEEC
Confidence 456789999999999999888888888 556654433
No 138
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=22.75 E-value=1.6e+02 Score=27.00 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=30.9
Q ss_pred ccCCEEEEecCC-H-HHHHHHHHHHHHcCCCEEEecccc
Q 006996 72 KQFNVVLNGLDN-L-DARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 72 ~~~DlVi~alDn-~-~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
...-+||-|-|- + ..+.++-.+|..+++|++..|+.-
T Consensus 41 gka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~ 79 (117)
T TIGR03677 41 GIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKE 79 (117)
T ss_pred CCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHH
Confidence 357789999887 3 358999999999999999998763
No 139
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=22.03 E-value=2.5e+02 Score=23.40 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEe--eCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 408 LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYE--VGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 408 ~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~--~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
..++++ .+.|+.+|-+. +.+..|+.+. ..++||. .+-.+ .-.++|+++ ++++|+.+.+
T Consensus 12 ~~v~v~-~~~Tv~~lK~~-i~~~tgvp~~----~QKLi~~~~~Gk~l----------~D~~~L~~~--~i~~g~~i~l 71 (74)
T cd01813 12 YSVTTL-SEDTVLDLKQF-IKTLTGVLPE----RQKLLGLKVKGKPA----------EDDVKISAL--KLKPNTKIMM 71 (74)
T ss_pred EEEEEC-CCCCHHHHHHH-HHHHHCCCHH----HEEEEeecccCCcC----------CCCcCHHHc--CCCCCCEEEE
Confidence 456777 46799999998 5677775442 2356662 22211 125789999 8999998876
No 140
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=22.00 E-value=2.1e+02 Score=24.73 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=41.7
Q ss_pred CchHHHHHHHHH----HhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecc
Q 006996 34 GQSKAKVARDAV----LKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 106 (622)
Q Consensus 34 Gk~KaevAa~~l----~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt 106 (622)
|--.+-.|++.| ++++-.++|+.....-.+..++.+-...+|+||-+.|.. ++..-+..++|++...+
T Consensus 9 G~Aht~lAae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~-----~~~~~rf~gk~v~~~~~ 80 (85)
T TIGR00829 9 GIAHTFMAAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE-----IDLSRRFAGKNVYETST 80 (85)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC-----CchhhhcCCCeEEEecH
Confidence 444444444444 455555666665544444456667789999999998864 22222356778877654
No 141
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.57 E-value=3.9e+02 Score=27.66 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhCCCCeEEE-EeccCCCCCchhhhh-----ccCCEEEEecCCHHHHHHHHHHHHHcCCCEEE
Q 006996 38 AKVARDAVLKFRPQMSITA-HHANVKDPKFNVEFF-----KQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 103 (622)
Q Consensus 38 aevAa~~l~~~NP~v~I~a-~~~~i~~~~~~~~f~-----~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~ 103 (622)
++.|++++++.. +++|.. |++.+.... ..... .+.|+|+.++-.++--.++.+.....+.+++-
T Consensus 118 ~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e-~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~ 187 (243)
T PRK03692 118 LAQTEAKLRTQW-NVNIVGSQDGYFTPEQ-RQALFERIHASGAKIVTVAMGSPKQEIFMRDCRLVYPDALYM 187 (243)
T ss_pred HHHHHHHHHHHh-CCEEEEEeCCCCCHHH-HHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHhCCCCEEE
Confidence 567888888877 888875 444443211 11222 58999999999999999998887777777643
No 142
>PRK07714 hypothetical protein; Provisional
Probab=21.42 E-value=1.5e+02 Score=26.16 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=28.5
Q ss_pred cCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEeccc
Q 006996 73 QFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTT 107 (622)
Q Consensus 73 ~~DlVi~alDn-~~aR~~vn~~c~~~~iPlI~sGt~ 107 (622)
..-+||-|.|- ...+..+-.+|..+++|++..++.
T Consensus 34 ~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk 69 (100)
T PRK07714 34 KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR 69 (100)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH
Confidence 45678888885 457889999999999999987764
No 143
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=20.47 E-value=2.7e+02 Score=23.40 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 415 SRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 415 ~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
...|+++|-+.| .++.|+.+.. .+++|. |..|+ -+.+|++. |+++|+.+.+.
T Consensus 21 ~~~TV~~lK~~i-~~~~gi~~~~----QrLi~~-Gk~L~----------D~~tL~~y--~i~~~~~i~l~ 72 (78)
T cd01797 21 RLTKVEELREKI-QELFNVEPEC----QRLFYR-GKQME----------DGHTLFDY--NVGLNDIIQLL 72 (78)
T ss_pred CcCcHHHHHHHH-HHHhCCCHHH----eEEEeC-CEECC----------CCCCHHHc--CCCCCCEEEEE
Confidence 468999999984 6777765421 234443 21121 14678999 99999988763
No 144
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=20.25 E-value=1.6e+02 Score=25.11 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=33.7
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 413 NTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 413 ~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
..+..|+.+|-..| .++.+-..+.. -..+++|.-.. |+ -+++|++. ||++|+.|.+
T Consensus 17 ~~~~~TV~~LK~kI-~~~~~egi~~~-dqQrLIy~GKi-L~----------D~~TL~dy--gI~~gstlhL 72 (75)
T cd01815 17 SPGGYQVSTLKQLI-AAQLPDSLPDP-ELIDLIHCGRK-LK----------DDQTLDFY--GIQSGSTIHI 72 (75)
T ss_pred CCccCcHHHHHHHH-HHhhccCCCCh-HHeEEEeCCcC-CC----------CCCcHHHc--CCCCCCEEEE
Confidence 34678999999984 66654222100 01245554321 21 14789999 9999988764
Done!