Query 006996
Match_columns 622
No_of_seqs 358 out of 1971
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y8q_B Anthracycline-, ubiquit 100.0 4E-110 1E-114 941.5 38.6 496 1-522 36-555 (640)
2 3cmm_A Ubiquitin-activating en 100.0 4.1E-89 1.4E-93 806.4 25.6 462 1-473 444-978 (1015)
3 1tt5_B Ubiquitin-activating en 100.0 8.9E-64 3E-68 545.7 22.8 351 1-495 59-431 (434)
4 2nvu_B Maltose binding protein 100.0 3.3E-59 1.1E-63 545.6 36.4 355 1-498 430-803 (805)
5 1z7l_A Ubiquitin-activating en 100.0 1.1E-42 3.8E-47 357.7 8.1 211 131-344 10-276 (276)
6 1y8q_A Ubiquitin-like 1 activa 100.0 5E-30 1.7E-34 272.6 18.9 126 1-129 55-180 (346)
7 3h8v_A Ubiquitin-like modifier 99.9 3.4E-28 1.1E-32 252.6 12.3 128 1-129 55-195 (292)
8 1tt5_A APPBP1, amyloid protein 99.9 2.6E-26 8.8E-31 256.3 21.7 148 1-151 51-199 (531)
9 3rui_A Ubiquitin-like modifier 99.9 1.7E-26 5.7E-31 243.9 11.0 162 1-165 53-242 (340)
10 1zud_1 Adenylyltransferase THI 99.9 5E-26 1.7E-30 231.6 10.6 128 1-129 47-175 (251)
11 3h5n_A MCCB protein; ubiquitin 99.9 5E-25 1.7E-29 234.7 13.2 128 1-129 137-266 (353)
12 1jw9_B Molybdopterin biosynthe 99.9 5.3E-25 1.8E-29 223.7 11.0 139 1-140 50-189 (249)
13 4gsl_A Ubiquitin-like modifier 99.9 4.5E-25 1.5E-29 247.1 10.5 128 1-129 345-493 (615)
14 3vh1_A Ubiquitin-like modifier 99.9 2.9E-24 9.9E-29 240.4 10.4 162 1-165 346-535 (598)
15 3cmm_A Ubiquitin-activating en 99.9 5.5E-23 1.9E-27 243.5 10.7 145 1-155 46-193 (1015)
16 1y8x_B Ubiquitin-activating en 99.0 6.5E-10 2.2E-14 97.1 8.2 91 402-499 1-97 (98)
17 3onh_A Ubiquitin-activating en 99.0 5E-10 1.7E-14 101.1 6.7 83 407-502 7-99 (127)
18 1z7l_A Ubiquitin-activating en 98.5 9.8E-08 3.3E-12 98.1 5.0 62 282-343 101-179 (276)
19 3h5n_A MCCB protein; ubiquitin 92.5 0.11 3.8E-06 54.8 5.2 58 344-405 291-351 (353)
20 1jw9_B Molybdopterin biosynthe 92.2 0.17 5.7E-06 50.6 5.9 57 344-404 190-248 (249)
21 3h8v_A Ubiquitin-like modifier 91.4 0.1 3.6E-06 53.7 3.5 61 341-405 211-273 (292)
22 1zud_1 Adenylyltransferase THI 87.8 0.8 2.7E-05 45.7 6.6 57 345-405 188-245 (251)
23 2kj6_A Tubulin folding cofacto 72.3 10 0.00036 32.2 7.2 65 406-487 27-96 (97)
24 3rui_A Ubiquitin-like modifier 70.8 2.5 8.7E-05 44.3 3.6 25 346-370 219-243 (340)
25 2bwf_A Ubiquitin-like protein 69.9 11 0.00037 29.6 6.4 61 407-486 15-75 (77)
26 2pjh_A Protein NPL4, nuclear p 65.6 3.5 0.00012 33.9 2.7 60 409-484 17-78 (80)
27 2kjr_A CG11242; UBL, ubiquitin 64.4 22 0.00074 30.0 7.6 62 407-485 29-94 (95)
28 1ndd_A NEDD8, protein (ubiquit 61.3 17 0.00057 28.2 5.9 59 407-484 12-70 (76)
29 3v6c_B Ubiquitin; structural g 60.7 18 0.00061 29.7 6.3 60 406-484 28-87 (91)
30 4gsl_A Ubiquitin-like modifier 60.5 9 0.00031 43.2 5.6 25 346-370 511-535 (615)
31 3a9j_A Ubiquitin; protein comp 60.4 17 0.00058 28.1 5.9 59 407-484 12-70 (76)
32 4f3y_A DHPR, dihydrodipicolina 59.3 32 0.0011 34.6 9.1 40 68-109 68-107 (272)
33 3ijp_A DHPR, dihydrodipicolina 58.2 10 0.00036 38.7 5.2 40 68-109 83-122 (288)
34 3dbh_I NEDD8; cell cycle, acti 57.4 21 0.00073 28.6 6.1 60 406-484 23-82 (88)
35 2kd0_A LRR repeats and ubiquit 57.1 36 0.0012 27.7 7.5 60 407-485 23-82 (85)
36 2klc_A Ubiquilin-1; ubiquitin- 56.6 38 0.0013 28.5 7.8 59 407-486 36-96 (101)
37 3n3k_B Ubiquitin; hydrolase, p 56.4 23 0.0008 28.1 6.2 59 407-484 15-73 (85)
38 3phx_B Ubiquitin-like protein 56.2 25 0.00087 27.7 6.3 59 407-484 16-74 (79)
39 1sif_A Ubiquitin; hydrophobic 55.3 29 0.001 28.3 6.7 59 407-484 21-79 (88)
40 2dzi_A Ubiquitin-like protein 54.5 28 0.00097 27.3 6.3 58 407-483 19-76 (81)
41 1wxv_A BAG-family molecular ch 53.9 33 0.0011 28.1 6.9 61 407-486 18-84 (92)
42 1j8c_A Ubiquitin-like protein 53.4 42 0.0014 29.6 7.8 59 407-486 43-103 (125)
43 3k9o_B Ubiquitin, UBB+1; E2-25 53.4 24 0.00081 29.0 5.9 58 407-483 13-70 (96)
44 1yx5_B Ubiquitin; proteasome, 53.3 34 0.0011 28.4 6.9 61 407-486 12-72 (98)
45 3mtn_B UBA80, ubcep1, ubiquiti 53.2 30 0.001 27.4 6.3 59 407-484 15-73 (85)
46 1wjn_A Tubulin-folding protein 53.1 35 0.0012 28.4 6.9 68 407-487 24-93 (97)
47 1v6e_A Cytoskeleton-associated 53.0 41 0.0014 27.9 7.3 63 407-486 20-87 (95)
48 3vh1_A Ubiquitin-like modifier 52.1 15 0.0005 41.4 5.5 25 347-371 513-537 (598)
49 4fbj_B NEDD8; effector-HOST ta 51.9 27 0.00091 28.5 5.9 58 407-483 12-69 (88)
50 3ic5_A Putative saccharopine d 49.3 23 0.0008 29.2 5.3 49 56-105 52-100 (118)
51 1wf9_A NPL4 family protein; be 46.9 26 0.00088 30.0 5.2 71 409-487 20-95 (107)
52 1v5o_A 1700011N24RIK protein; 46.6 35 0.0012 28.7 6.0 58 407-484 23-82 (102)
53 1wh3_A 59 kDa 2'-5'-oligoadeny 46.0 32 0.0011 27.6 5.4 59 407-484 19-77 (87)
54 4hcn_B Polyubiquitin, ubiquiti 45.1 35 0.0012 28.4 5.7 59 407-484 34-92 (98)
55 2ojr_A Ubiquitin; lanthide-bin 44.5 59 0.002 27.7 7.2 58 408-484 48-105 (111)
56 1t0y_A Tubulin folding cofacto 44.2 61 0.0021 28.3 7.4 67 407-487 19-87 (122)
57 2faz_A Ubiquitin-like containi 44.1 74 0.0025 24.7 7.2 57 409-484 17-74 (78)
58 2kan_A Uncharacterized protein 43.8 45 0.0015 27.7 6.1 57 407-484 26-85 (94)
59 3m62_B UV excision repair prot 42.2 37 0.0013 28.9 5.4 59 407-484 13-71 (106)
60 1wx7_A Ubiquilin 3; ubiquitin- 41.4 45 0.0015 28.1 5.9 55 408-481 29-83 (106)
61 1wju_A NEDD8 ultimate buster-1 40.7 50 0.0017 28.3 6.0 59 406-483 30-88 (100)
62 2wyq_A HHR23A, UV excision rep 40.5 66 0.0023 25.4 6.5 61 407-486 17-80 (85)
63 2kdi_A Ubiquitin, vacuolar pro 40.1 64 0.0022 27.8 6.7 60 407-485 21-80 (114)
64 4b6w_A Tubulin-specific chaper 39.9 93 0.0032 25.5 7.4 66 409-487 18-84 (86)
65 3vdz_A Ubiquitin-40S ribosomal 39.6 58 0.002 27.9 6.3 59 407-484 47-105 (111)
66 1uel_A HHR23B, UV excision rep 39.5 69 0.0024 26.4 6.6 60 407-485 12-74 (95)
67 1wx8_A Riken cDNA 4931431F19; 38.2 44 0.0015 27.5 5.1 59 407-484 28-86 (96)
68 2bps_A YUKD protein; ubiquitin 37.7 70 0.0024 26.4 6.1 57 407-483 18-80 (81)
69 2hj8_A Interferon-induced 17 k 37.2 33 0.0011 27.9 4.2 61 407-486 16-76 (88)
70 1yqb_A Ubiquilin 3; structural 37.1 61 0.0021 27.2 6.0 58 408-484 34-91 (100)
71 2l7r_A Ubiquitin-like protein 36.9 57 0.0019 26.9 5.7 59 407-484 29-87 (93)
72 3jyo_A Quinate/shikimate dehyd 36.7 31 0.0011 34.8 4.7 41 36-81 162-202 (283)
73 4dwf_A HLA-B-associated transc 35.6 71 0.0024 25.7 6.0 57 407-483 17-73 (90)
74 1ttn_A DC-UBP, dendritic cell- 34.9 62 0.0021 27.3 5.7 61 407-486 35-95 (106)
75 2kk8_A Uncharacterized protein 34.5 52 0.0018 26.7 4.9 58 407-483 22-80 (84)
76 3rt3_B Ubiquitin-like protein 34.4 1.1E+02 0.0038 27.3 7.8 74 407-498 14-88 (159)
77 2uyz_B Small ubiquitin-related 34.2 47 0.0016 26.1 4.6 59 407-484 15-73 (79)
78 3b08_A Polyubiquitin-C, ubiqui 33.4 1.7E+02 0.006 25.4 8.8 63 407-488 12-74 (152)
79 1wy8_A NP95-like ring finger p 32.8 73 0.0025 25.5 5.6 58 407-483 20-78 (89)
80 2kzr_A Ubiquitin thioesterase 32.4 71 0.0024 25.8 5.5 61 412-487 17-78 (86)
81 4a20_A Ubiquitin-like protein 31.7 1E+02 0.0035 26.0 6.5 60 407-484 33-93 (98)
82 3m63_B Ubiquitin domain-contai 31.7 37 0.0013 28.7 3.7 58 409-485 41-98 (101)
83 3abi_A Putative uncharacterize 30.5 55 0.0019 33.7 5.5 47 58-105 62-108 (365)
84 1wia_A Hypothetical ubiquitin- 30.5 63 0.0022 26.5 4.9 55 407-483 19-74 (95)
85 4eew_A Large proline-rich prot 30.2 1E+02 0.0035 24.6 6.1 57 407-483 29-85 (88)
86 1we6_A Splicing factor, putati 29.5 91 0.0031 26.4 5.9 60 407-484 42-101 (111)
87 3on1_A BH2414 protein; structu 29.5 76 0.0026 26.7 5.3 37 72-108 33-70 (101)
88 2m1z_A LMO0427 protein; homolo 29.3 51 0.0018 28.6 4.2 65 38-107 22-86 (106)
89 1wyw_B Ubiquitin-like protein 28.8 65 0.0022 26.7 4.7 59 407-484 33-91 (97)
90 1wm3_A Ubiquitin-like protein 28.2 83 0.0029 24.6 5.0 58 407-483 13-70 (72)
91 3dfz_A SIRC, precorrin-2 dehyd 28.0 99 0.0034 30.1 6.5 37 65-102 83-119 (223)
92 1p9l_A Dihydrodipicolinate red 28.0 1.2E+02 0.0039 30.0 7.1 58 48-110 22-80 (245)
93 1we7_A SF3A1 protein; structur 27.2 1.2E+02 0.0039 26.0 6.2 56 407-483 47-104 (115)
94 3rt3_B Ubiquitin-like protein 25.4 1.2E+02 0.0042 27.0 6.3 60 406-484 92-151 (159)
95 3a4r_A Nfatc2-interacting prot 25.3 92 0.0031 25.0 4.8 58 407-483 20-77 (79)
96 3v7q_A Probable ribosomal prot 25.3 1.1E+02 0.0038 25.7 5.6 36 73-108 35-71 (101)
97 2d07_B Ubiquitin-like protein 25.0 1E+02 0.0035 25.6 5.2 59 407-484 29-87 (93)
98 1v86_A DNA segment, CHR 7, way 24.8 77 0.0026 26.2 4.4 58 407-486 28-87 (95)
99 4dbg_A Ranbp-type and C3HC4-ty 24.7 1.8E+02 0.0061 25.0 6.8 55 407-482 38-95 (105)
100 3u30_A Ubiquitin, linear DI-ub 24.7 1.7E+02 0.0057 26.6 7.2 62 407-487 32-93 (172)
101 1uh6_A Ubiquitin-like 5; beta- 24.3 1.1E+02 0.0037 26.2 5.3 57 406-483 39-97 (100)
102 1hym_A CMTI-V, hydrolyzed cucu 24.3 79 0.0027 23.3 3.7 26 33-59 14-39 (45)
103 2io0_B Small ubiquitin-related 24.3 1.3E+02 0.0043 25.0 5.6 59 407-484 17-75 (91)
104 2io1_B Small ubiquitin-related 23.6 93 0.0032 26.0 4.7 59 407-484 19-77 (94)
105 3b08_A Polyubiquitin-C, ubiqui 23.6 1.4E+02 0.0049 26.0 6.3 59 407-484 88-146 (152)
106 1dih_A Dihydrodipicolinate red 22.7 86 0.0029 31.3 5.1 40 69-110 68-107 (273)
107 2kyr_A Fructose-like phosphotr 22.6 46 0.0016 29.2 2.6 64 39-107 26-89 (111)
108 3b1l_X E3 ubiquitin-protein li 27.4 19 0.00066 28.1 0.0 56 409-483 14-69 (76)
109 1wz0_A Ubiquitin-like protein 21.2 1.6E+02 0.0053 25.2 5.7 59 407-484 36-94 (104)
110 3l0w_B Monoubiquitinated proli 21.0 2E+02 0.0068 26.5 6.9 59 407-484 12-70 (169)
111 3v7e_A Ribosome-associated pro 20.7 1.2E+02 0.0041 24.5 4.7 36 73-108 27-63 (82)
112 3q3f_A Ribonuclease/ubiquitin 20.2 1.6E+02 0.0056 27.9 6.2 59 407-484 117-175 (189)
No 1
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=100.00 E-value=4e-110 Score=941.46 Aligned_cols=496 Identities=38% Similarity=0.647 Sum_probs=420.3
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++++..+..+|+.+||+||+|
T Consensus 36 La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda 115 (640)
T 1y8q_B 36 LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNA 115 (640)
T ss_dssp HHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEEC
T ss_pred HHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecccchhhhhHhhhcCCCEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999998777778999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeeehhhhHHHHH
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFA 160 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI~wa~~~~f~ 160 (622)
+||+.+|++||++|+.+++|||++|+.|+.|+++++.|+.|+||+|.+.|+++++|+||++++|+.++|||+||++ +|+
T Consensus 116 ~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~-~f~ 194 (640)
T 1y8q_B 116 LDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKY-LFN 194 (640)
T ss_dssp CSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTSCCTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEecccceEEEECCCCCCCcccCCCCCCcccceeeecCCCCchHHHHHHHHH-HHH
Confidence 9999999999999999999999999999999999999999999999998888999999999999999999999998 899
Q ss_pred HHhCCCCcccccc----cCCCc-cc-----------chhhHHhhhhcCChhhHHHHHH-HhhhccccccHHHHhcCCccc
Q 006996 161 KLFGDKNQENDLN----VRSSD-AS-----------SSAHAEDVFVRRKDEDIDQYGR-RIYDHVFGYNIEVASSNEETW 223 (622)
Q Consensus 161 ~lF~~~~~~~dl~----~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~a~-~lf~~~F~~~I~~Ll~~~~~W 223 (622)
.|||+....+++. ..... .. .++.+... ..+.|.+|+.||+ .+|+++|+++|++||+|++||
T Consensus 195 ~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW 273 (640)
T 1y8q_B 195 QLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRI-STKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLW 273 (640)
T ss_dssp HHHSCCCGGGCCSCCTTCTTSCCC----------------------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTCGGGC
T ss_pred HHhCCcchhhhhcccccchhhhhhhhhhhhhhhhhhhhhHHHHH-hhhhHHHhHhHHHHHHHHHHHhhHHHHHHhCcccc
Confidence 9999865333221 11100 00 00011111 1224667777876 499999999999999999999
Q ss_pred CCCCCCCcccCCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhh--ccCC
Q 006996 224 KNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREK--EIGN 301 (622)
Q Consensus 224 ~~rr~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~--~~~~ 301 (622)
++||+|+||.|+.+.+.++.. .....+.+..+|+++ +.+|++.++.++|.++++++.++... .+.+
T Consensus 274 ~~kr~P~pl~fd~~~~~~~~~-----------~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 341 (640)
T 1y8q_B 274 RKRKPPVPLDWAEVQSQGEET-----------NASDQQNEPQLGLKD-QQVLDVKSYARLFSKSIETLRVHLAEKGDGAE 341 (640)
T ss_dssp SSSCCCCCCCHHHHHHC-------------------------CCCGG-GSCCCHHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred cCCCCCCCcccCccccccccc-----------cccccccccccCCCh-hhhcChhhhhhhHHHHHHHHHHHhhhcccCCC
Confidence 999999999998533221110 000111223445544 77999999999999999999877532 4789
Q ss_pred ccCCCCcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecc
Q 006996 302 LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEH 381 (622)
Q Consensus 302 l~FDKDD~~h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~ 381 (622)
++|||||+.||+||+|||||||++|+||++|+|++|+|||||||||||||||||||+|+|+||++++..+.|||+|++++
T Consensus 342 ~~FdKDDd~h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~n~a 421 (640)
T 1y8q_B 342 LIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQ 421 (640)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEECSS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcccchhhHHHHHHHHHHHHHHHHHhccHHhhhhhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999998
Q ss_pred -cccceeecccCCCCCCCCcccCC-cccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceee---cCcEEEeeCCCccHHH
Q 006996 382 -ITKKMLLMPVEPYEPNKSCYVCS-ETPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMH---GSNLLYEVGDDLDEVE 456 (622)
Q Consensus 382 -~~~~~~~~~~~~~~pn~~C~vC~-~~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~---g~~~LY~~~~~l~~~~ 456 (622)
+.+++++.++.|.+|+|+|++|+ .++++++++.+++||++|++++++++|||+.++|++ |+++||..+++
T Consensus 422 ~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~~~~~~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~ly~~~~~----- 496 (640)
T 1y8q_B 422 PNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEG----- 496 (640)
T ss_dssp CCTTSEEEEEEECCCCCTTCTTTSSSCEEEEEECTTTCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEEECSSSS-----
T ss_pred cCCCCcEEeecccCCCCCCCcccCCccEEEEEEeCCCCcHHHHHHHHHHHhhCCCCceEEEEcCCCcEEEeccch-----
Confidence 55778999999999999999995 668899999889999999999778999999999999 88999987653
Q ss_pred HHHHhhhhhcccccCCCCCCCCcEEEEeeCCCCeEEEEEEEeccCCCCCCCCCceEecCCCCCCCC
Q 006996 457 VANYAANLEKVLSQLPSPVTNGTMLTVEDLQQELTCNINIKHREEFDEEKEPDGMLLSGWTQAPPA 522 (622)
Q Consensus 457 ~~~~~~nl~k~L~el~~~i~~g~~l~v~D~~~~~~~~l~i~~~~~~~~~~~~~~~~l~g~~~~~~~ 522 (622)
.+++||.|+|++| ++++|++++|+|+.+.+.++|.+.|+++. +++.+|+|+|+.+....
T Consensus 497 --~~~~~l~~~l~el--~v~~~~~~~v~d~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~ 555 (640)
T 1y8q_B 497 --ETEANNHKKLSEF--GIRNGSRLQADDFLQDYTLLINILHSEDL---GKDVEFEVVGDAPEKVG 555 (640)
T ss_dssp --SSTTGGGSBGGGG--TCCTTCEEEEEETTTTEEEEEEEEECSCC---CTTCCEEETTCC-----
T ss_pred --hhHHhhhCcHHHh--CccCCcEEEecCCCccEEEEEEEEecCcc---cCCCCeEEecCCccccC
Confidence 2568999999999 89999999999999999999999998743 34567999998776653
No 2
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-89 Score=806.36 Aligned_cols=462 Identities=27% Similarity=0.392 Sum_probs=359.9
Q ss_pred CcccCc-----cEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCC--eEEEEeccCCCC---Cchhhh
Q 006996 1 MVSERQ-----LEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM--SITAHHANVKDP---KFNVEF 70 (622)
Q Consensus 1 lv~~Gv-----G~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v--~I~a~~~~i~~~---~~~~~f 70 (622)
|+++|+ |+|+|||+|+|+.|||||||||+.+|||++||++|+++++++||++ +|+++..+++.. .++.+|
T Consensus 444 La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~ 523 (1015)
T 3cmm_A 444 WALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSF 523 (1015)
T ss_dssp HHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHH
T ss_pred HHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhh
Confidence 356788 9999999999999999999999999999999999999999999999 999999999642 356789
Q ss_pred hccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceee
Q 006996 71 FKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHC 150 (622)
Q Consensus 71 ~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hc 150 (622)
|+++|+||+|+||+++|++||++|+.+++|||++|+.|+.|+++++.|+.|+||+|..+|+++++|+||++++|+.++||
T Consensus 524 ~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~ 603 (1015)
T 3cmm_A 524 WESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHT 603 (1015)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHHHH
T ss_pred hccCCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCCccccceEEEeCCCCCccCCCCCCCCCCCCcccccCCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred ehhhhHHHHHHHhCCCCccc-c-cccCC---------Ccc-cchhhHHhhh--hcCChhhHHHHHHHhhhccccccHHHH
Q 006996 151 IVWAKDLLFAKLFGDKNQEN-D-LNVRS---------SDA-SSSAHAEDVF--VRRKDEDIDQYGRRIYDHVFGYNIEVA 216 (622)
Q Consensus 151 I~wa~~~~f~~lF~~~~~~~-d-l~~~~---------~~~-~~~~~~~~~~--~~~~~~~~~~~a~~lf~~~F~~~I~~L 216 (622)
|+||++ +|+.+|+...+.. . +.... ... ..++.+.+.+ .+.++++|++||+.+|+++|+++|++|
T Consensus 604 i~wa~~-~f~~lf~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~c~~~a~~~f~~~F~~~I~~L 682 (1015)
T 3cmm_A 604 IAWAKS-LFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQL 682 (1015)
T ss_dssp HHHHHH-HHHHHHTHHHHHHHHHHHCTTHHHHHHC---CCHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHH-HHHHHHhhhhhhhhhhccCchhHHHHHhccchhHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8999999754321 1 11110 000 1223333333 245789999999999999999999999
Q ss_pred hcC----------CcccCC-CCCCCcccCCCCCCcc---------hhhhcccccccccccchhhhHHh----hcCC----
Q 006996 217 SSN----------EETWKN-RNRPKPIYSADVMPEN---------LTEQNGNVAKNCVVDTSSVSAMA----SLGL---- 268 (622)
Q Consensus 217 l~~----------~~~W~~-rr~P~pl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~s~~~----~~~~---- 268 (622)
|.+ ++||++ ||+|+||.|+...+.+ +.+.++++....+.-......+. ...+
T Consensus 683 l~~~p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~ 762 (1015)
T 3cmm_A 683 LFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFT 762 (1015)
T ss_dssp HHHSCTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCC
T ss_pred HHhCCcccccccCcccccCCCCCCCCcccCCCCHHHHHHHHHHHHhHHHhcCCCCccccccCCHHHHHHHHhhCcCCCcC
Confidence 987 899998 9999999999654332 23334443110000000000000 0000
Q ss_pred -CCCCCccccc-----cchHH-HHHHHHHHHHhhh-------hccCCccCCCCcHh--HHHHHHHHHHHHHHHcCCCCCC
Q 006996 269 -KNPQDTWTLL-----ESSRI-FLEALKLFFAKRE-------KEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHS 332 (622)
Q Consensus 269 -~~~~~~~s~~-----e~~~~-f~~~~~~~~~~~~-------~~~~~l~FDKDD~~--h~dFV~AaaNLRA~~f~I~~~s 332 (622)
+..-+++..+ +.... |.++++++..+.. ..+.|++|||||+. |||||+|||||||+||+||++|
T Consensus 763 ~~~~~ki~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~ 842 (1015)
T 3cmm_A 763 PNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETAD 842 (1015)
T ss_dssp CCSSCCCCSSTTSSCC---------CCHHHHTTSCCGGGGTTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CccCceeccchhhhcccccccccHHHHHHHHHHhccchhcccCCCCceeeecCCCchhHHHHHHHHHHHHHHHcCCCccC
Confidence 0000011000 00111 4555666665422 13789999999998 9999999999999999999999
Q ss_pred HHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhc--CcccceeeEeecccccceeecccCCC-CCCCCcccCCc--cc
Q 006996 333 LFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK--DTDKYRMTYCLEHITKKMLLMPVEPY-EPNKSCYVCSE--TP 407 (622)
Q Consensus 333 ~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~--~~~~~r~~f~~~~~~~~~~~~~~~~~-~pn~~C~vC~~--~~ 407 (622)
||++|+|||||||||||||||||||+|+|+||++++ ..+.|||+|+|+++. ++.+++|. +|+++|+.|++ .+
T Consensus 843 ~~~~k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~~~~~~kn~f~nla~~---~~~~~~p~~~~~~~~~~~~~~t~w 919 (1015)
T 3cmm_A 843 RQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALP---FFGFSEPIASPKGEYNNKKYDKIW 919 (1015)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCEEEEETTTT---EEEEECCCBCCEEEETTEEEETTT
T ss_pred HHHHHHHhCCcCccchhHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhccCC---ceeecCCCCCCCCCCCCCCCCeEE
Confidence 999999999999999999999999999999999998 468999999999843 35566654 45566666652 23
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCC
Q 006996 408 LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPS 473 (622)
Q Consensus 408 ~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~ 473 (622)
..++++. ++||++|+++ ++++||++++||+.|.++||+.+++. +.++++|+++|++|..
T Consensus 920 d~~~v~~-~~Tl~~li~~-~~~~~~~~~~~i~~~~~~ly~~~~~~-----~~~~~~l~~~l~~l~~ 978 (1015)
T 3cmm_A 920 DRFDIKG-DIKLSDLIEH-FEKDEGLEITMLSYGVSLLYASFFPP-----KKLKERLNLPITQLVK 978 (1015)
T ss_dssp CEEEEES-CCBHHHHHHH-HHHTTCCEEEEEEETTEEEEETTCCH-----HHHHHHTTSBHHHHHH
T ss_pred EEEEECC-CCcHHHHHHH-HHHHhCCcceeeccCCcEEEecCCCc-----hhhHHhccCCHHHHHH
Confidence 3566664 8999999998 58899999999999999999998642 2356899999999953
No 3
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=100.00 E-value=8.9e-64 Score=545.68 Aligned_cols=351 Identities=29% Similarity=0.487 Sum_probs=284.0
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|+|+|+|+|+|+|+.|||||||||+.+|||++||++|+++++++||+++|+++..++.+. +.+|+++||+||+|
T Consensus 59 La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~--~~~~~~~~DlVi~~ 136 (434)
T 1tt5_B 59 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF--NDTFYRQFHIIVCG 136 (434)
T ss_dssp HHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGB--CHHHHTTCSEEEEC
T ss_pred HHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchh--hHHHhcCCCEEEEC
Confidence 4678999999999999999999999999999999999999999999999999999999998653 36899999999999
Q ss_pred cCCHHHHHHHHHHHHHc------------CCCEEEeccccccceEEEEeCCCCccccccCC--CCCCCCCcccccCCCCC
Q 006996 81 LDNLDARRHVNRLCLAA------------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITSTPSK 146 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~------------~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~~~P~CTi~~~P~~ 146 (622)
+||+++|++||++|+.+ ++|||++|+.|+.||++++.|+.++||+|.++ |++..+|.||++++|+.
T Consensus 137 ~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~ 216 (434)
T 1tt5_B 137 LDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRL 216 (434)
T ss_dssp CSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCS
T ss_pred CCCHHHHHHHHHHHHHhhhccccccccccCCcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcc
Confidence 99999999999999984 99999999999999999999999999999965 55678999999999999
Q ss_pred ceeeehhhhHHHHHHHhCCCCcccccccCCCcccchhhHHhhhhcCChhhHHHHHHHhhhccccccHHHHhcCCcccCCC
Q 006996 147 FVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNR 226 (622)
Q Consensus 147 ~~hcI~wa~~~~f~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~~~~W~~r 226 (622)
++|||+||+.++|+..+.
T Consensus 217 ~~h~i~~a~~i~~~~~~~-------------------------------------------------------------- 234 (434)
T 1tt5_B 217 PEHCIEYVRMLQWPKEQP-------------------------------------------------------------- 234 (434)
T ss_dssp HHHHHHHHHHTHHHHSCT--------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhhhcc--------------------------------------------------------------
Confidence 999999999854432110
Q ss_pred CCCCcccCCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCccCCC
Q 006996 227 NRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDK 306 (622)
Q Consensus 227 r~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~l~FDK 306 (622)
. .+++.||+
T Consensus 235 ---~--------------------------------------------------------------------~~~~~~d~ 243 (434)
T 1tt5_B 235 ---F--------------------------------------------------------------------GEGVPLDG 243 (434)
T ss_dssp ---T--------------------------------------------------------------------CTTCCCCT
T ss_pred ---c--------------------------------------------------------------------ccccccCC
Confidence 0 01347999
Q ss_pred CcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecccccce
Q 006996 307 DDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKM 386 (622)
Q Consensus 307 DD~~h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~~~~~ 386 (622)
||+.|++||+++||+||..|||+.++++.+++++|+||||||||||||||++++|++|+|.+..+...+.++.-... ..
T Consensus 244 d~~~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~~l~~d~~~-~~ 322 (434)
T 1tt5_B 244 DDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVD-GL 322 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCSEEEEECSB-SC
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCceEEEEcCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999998754333322211111 11
Q ss_pred eecccCCCCCCCCcccCCcccEEEEEcCCCCCHHHHHHHHHHH-hcCCCCcceee----cCcEEEeeCCC-ccHHHHHHH
Q 006996 387 LLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKA-KLGINFPLIMH----GSNLLYEVGDD-LDEVEVANY 460 (622)
Q Consensus 387 ~~~~~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~ilk~-~~~~~~~~I~~----g~~~LY~~~~~-l~~~~~~~~ 460 (622)
.......+++|.|++|+..+..++++. ++||++|++.+.++ .++++.|+|+. |.++||+.+.+ ++ +.+
T Consensus 323 -~~~~~~~~~~~~C~vC~~~~~~~~~~~-~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~----~~~ 396 (434)
T 1tt5_B 323 -YTYTFEAERKENCPACSQLPQNIQFSP-SAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIE----ERT 396 (434)
T ss_dssp -EEEEECCCCCTTCTTTCSSCBCCCC------CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTT----TTS
T ss_pred -eeEEEeccCCCCCCccCCCCceEEECC-CccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchh----hhh
Confidence 111223468999999997566666764 57999999986443 57899999988 58899987643 33 246
Q ss_pred hhhhhcccccCCCCCCCCcEEEEeeCC--CCeEEEEE
Q 006996 461 AANLEKVLSQLPSPVTNGTMLTVEDLQ--QELTCNIN 495 (622)
Q Consensus 461 ~~nl~k~L~el~~~i~~g~~l~v~D~~--~~~~~~l~ 495 (622)
++||+|+|+|| |+.+|++|+|+|.. +.++++|.
T Consensus 397 ~~~l~~~l~~l--~~~~g~~~~v~d~~~~~~~~~~~~ 431 (434)
T 1tt5_B 397 RPNLSKTLKEL--GLVDGQELAVADVTTPQTVLFKLH 431 (434)
T ss_dssp CC-CCC-------CCCSSCCEECCCTTCSSCCEEC--
T ss_pred HhhhcCCHHHc--CCCCCCEEEEECCCCcccEEEEEE
Confidence 78999999999 99999999999954 45555443
No 4
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=100.00 E-value=3.3e-59 Score=545.55 Aligned_cols=355 Identities=29% Similarity=0.475 Sum_probs=300.1
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++|+++||+++|+++..++++. +.+|+++||+||+|
T Consensus 430 L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~--~~~~~~~~d~vv~~ 507 (805)
T 2nvu_B 430 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDF--NDTFYRQFHIIVCG 507 (805)
T ss_dssp HHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCEEEEEESCGGGS--CHHHHHTCSEEEEC
T ss_pred HHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHCCCCEEEEEecccccc--HHHHHhcCCEEEEC
Confidence 4688999999999999999999999999999999999999999999999999999999999753 36899999999999
Q ss_pred cCCHHHHHHHHHHHHHc------------CCCEEEeccccccceEEEEeCCCCccccccCC--CCCCCCCcccccCCCCC
Q 006996 81 LDNLDARRHVNRLCLAA------------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPKTYPVCTITSTPSK 146 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~------------~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~--~~~~~~P~CTi~~~P~~ 146 (622)
+||+++|++||++|+.. ++|+|++|+.|+.||++++.|+.++||+|.++ |++..+|.||++++|+.
T Consensus 508 ~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~ 587 (805)
T 2nvu_B 508 LDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRL 587 (805)
T ss_dssp CSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCS
T ss_pred CCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCC
Confidence 99999999999999984 99999999999999999999999999999964 55678999999999999
Q ss_pred ceeeehhhhHHHHHHHhCCCCcccccccCCCcccchhhHHhhhhcCChhhHHHHHHHhhhccccccHHHHhcCCcccCCC
Q 006996 147 FVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETWKNR 226 (622)
Q Consensus 147 ~~hcI~wa~~~~f~~lF~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~lf~~~F~~~I~~Ll~~~~~W~~r 226 (622)
++|||.||+.++|...+
T Consensus 588 ~~~~i~~a~~~~~~~~~--------------------------------------------------------------- 604 (805)
T 2nvu_B 588 PEHCIEYVRMLQWPKEQ--------------------------------------------------------------- 604 (805)
T ss_dssp HHHHHHHHHHTHHHHHC---------------------------------------------------------------
T ss_pred ccHHHHHHHHhhccccc---------------------------------------------------------------
Confidence 99999999975443211
Q ss_pred CCCCcccCCCCCCcchhhhcccccccccccchhhhHHhhcCCCCCCCccccccchHHHHHHHHHHHHhhhhccCCccCCC
Q 006996 227 NRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLSFDK 306 (622)
Q Consensus 227 r~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~~e~~~~f~~~~~~~~~~~~~~~~~l~FDK 306 (622)
| ..+++.||+
T Consensus 605 --~--------------------------------------------------------------------~~~~~~~d~ 614 (805)
T 2nvu_B 605 --P--------------------------------------------------------------------FGEGVPLDG 614 (805)
T ss_dssp --T--------------------------------------------------------------------TSTTCCCCT
T ss_pred --C--------------------------------------------------------------------CCCcccCCC
Confidence 0 012347999
Q ss_pred CcHhHHHHHHHHHHHHHHHcCCCCCCHHHHHhhhcccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecccccce
Q 006996 307 DDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKM 386 (622)
Q Consensus 307 DD~~h~dFV~AaaNLRA~~f~I~~~s~~~vK~iAGnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~~~~~ 386 (622)
||+.|++||++++|+||..|||+..+++.+++++|+||||||||||||||++++|++|+|.+..+...+.++.-... ..
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~-~~ 693 (805)
T 2nvu_B 615 DDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVD-GL 693 (805)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSB-SC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCceEEecCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999998764443322221111 11
Q ss_pred eecccCCCCCCCCcccCCcccEEEEEcCCCCCHHHHHHHHHHH-hcCCCCcceee----cCcEEEeeCCCccHHHHHHHh
Q 006996 387 LLMPVEPYEPNKSCYVCSETPLSLEINTSRSKLRDFVEKIVKA-KLGINFPLIMH----GSNLLYEVGDDLDEVEVANYA 461 (622)
Q Consensus 387 ~~~~~~~~~pn~~C~vC~~~~~~l~i~~~~~TL~~li~~ilk~-~~~~~~~~I~~----g~~~LY~~~~~l~~~~~~~~~ 461 (622)
.......+++|.|++|+..+..++++. ++||++|++.+.++ +++++.|+|++ |.++||+.+.+ +..+.++
T Consensus 694 -~~~~~~~~~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~---~~~~~~~ 768 (805)
T 2nvu_B 694 -YTYTFEAERKENCPACSQLPQNIQFSP-SAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT---SIEERTR 768 (805)
T ss_dssp -EEEEECCCCCTTCTTTSCCCEEEEECT-TSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSH---HHHHHHG
T ss_pred -ccccccCCCCCCCCeeCceeEEEEECC-cChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCcc---chhhhhH
Confidence 111223468999999998777888885 58999999986544 67899999988 57899987642 3345688
Q ss_pred hhhhcccccCCCCCCCCcEEEEeeCCCCeEEEEEEEe
Q 006996 462 ANLEKVLSQLPSPVTNGTMLTVEDLQQELTCNINIKH 498 (622)
Q Consensus 462 ~nl~k~L~el~~~i~~g~~l~v~D~~~~~~~~l~i~~ 498 (622)
+||+|+|++| |+++|++|+|+|......+++.|.+
T Consensus 769 ~~l~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (805)
T 2nvu_B 769 PNLSKTLKEL--GLVDGQELAVADVTTPQTVLFKLHF 803 (805)
T ss_dssp GGGGSBTTTT--TCCTTCEEEEECTTSSSCEEEEEEE
T ss_pred hhhcCCHHHc--CCCCCCEEEEEcCCCCeeEEEEEEe
Confidence 9999999999 9999999999995554444444443
No 5
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=100.00 E-value=1.1e-42 Score=357.71 Aligned_cols=211 Identities=22% Similarity=0.323 Sum_probs=139.6
Q ss_pred CCCCCCcccccCCCCCceeeehhhhHHHHHHHhCCCCccc-c-cccCC--------Ccc---cchhhHHhhh---hcCCh
Q 006996 131 APKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN-D-LNVRS--------SDA---SSSAHAEDVF---VRRKD 194 (622)
Q Consensus 131 ~~~~~P~CTi~~~P~~~~hcI~wa~~~~f~~lF~~~~~~~-d-l~~~~--------~~~---~~~~~~~~~~---~~~~~ 194 (622)
-++++|+|||||||+.++|||+|||+ +|++||+...+.. . +.... ... ..++.+.+.+ .++++
T Consensus 10 ~~ks~P~CTlrsfP~~i~HcI~WAr~-lFe~lF~~~~~~~n~~l~dp~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~~~ 88 (276)
T 1z7l_A 10 FEKSIPICTLKNFPNAIEHTLQWARD-EFEGLFKQPAENVNQYLTDSKFVERTLRLAGTQPLEVLEAVQRSLVLQRPQTW 88 (276)
T ss_dssp ----CCHHHHHTCCCSHHHHHHHHHH-HHHHHHTHHHHHHHHHTTCSHHHHHHHTSSTTHHHHHHHHHHHHHTTTCCSSH
T ss_pred CCCCCceeccCCCCCChhHHHHHHHH-HHHHHHcCCHHHHHHhhcChHHHHHHHhccchhhHHHHHHHHHHHhhcCCCcH
Confidence 36899999999999999999999999 8999999754321 1 11110 000 1233333333 34578
Q ss_pred hhHHHHHHHhhhccccccHHHHhcC----------CcccCC-CCCCCcccCCCCCCc---------chhhhccccccccc
Q 006996 195 EDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVMPE---------NLTEQNGNVAKNCV 254 (622)
Q Consensus 195 ~~~~~~a~~lf~~~F~~~I~~Ll~~----------~~~W~~-rr~P~pl~~~~~~~~---------~~~~~~~~~~~~~~ 254 (622)
++|++||+.+|+++|+++|++||.| ++||++ ||+|+||.|+...+. .++++++++... .
T Consensus 89 ~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~-~ 167 (276)
T 1z7l_A 89 GDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGS-Q 167 (276)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCC-C
Confidence 9999999999999999999999998 899998 999999999964332 244555555210 0
Q ss_pred ccchhh-hHHhhcCC-----CCCCCcccccc-----chHHHHHHHHHHHHhhh-------hccCCccCCCCcHh--HHHH
Q 006996 255 VDTSSV-SAMASLGL-----KNPQDTWTLLE-----SSRIFLEALKLFFAKRE-------KEIGNLSFDKDDQL--AVEF 314 (622)
Q Consensus 255 ~~~~~~-s~~~~~~~-----~~~~~~~s~~e-----~~~~f~~~~~~~~~~~~-------~~~~~l~FDKDD~~--h~dF 314 (622)
+.... .......+ +...+++..+. ...++.+++++|..+.. ..+.|++|||||++ ||||
T Consensus 168 -d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pl~FeKDDd~N~hmdF 246 (276)
T 1z7l_A 168 -DRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDF 246 (276)
T ss_dssp -CHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------CCSHHHHHHHHHSCCGGGSTTCCCCCCCCCSSCTTSSHHHH
T ss_pred -CHHHHHHHHhcCCCCCcCCccccccccchhhhchhcccccHHHHHHHHHHhhhhhhcccccCCCcceecCCCcccHHHH
Confidence 00000 00111111 01011221110 01223456666665532 23789999999999 9999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHhhhcccc
Q 006996 315 VTAAANIRAASFGISLHSLFEAKGIAGNIV 344 (622)
Q Consensus 315 V~AaaNLRA~~f~I~~~s~~~vK~iAGnII 344 (622)
|+|||||||+||+||++|||++|+||||||
T Consensus 247 ItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 247 IVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence 999999999999999999999999999998
No 6
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=99.97 E-value=5e-30 Score=272.59 Aligned_cols=126 Identities=17% Similarity=0.327 Sum_probs=117.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++++++|+++||.++|+++...+++ ...+|+++||+||+|
T Consensus 55 La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~--~~~~~~~~~dvVv~~ 132 (346)
T 1y8q_A 55 LILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEK--KPESFFTQFDAVCLT 132 (346)
T ss_dssp HHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGG--CCHHHHTTCSEEEEE
T ss_pred HHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecccCc--chHHHhcCCCEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999998865 347899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCC
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 129 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~ 129 (622)
+||..+|.+||++|+.+++|+|.+|+.|+.|++++..+ ..+|+.|...
T Consensus 133 ~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v~~d~~-~~~~~~~~~~ 180 (346)
T 1y8q_A 133 CCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLG-EHEFVEEKTK 180 (346)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEEEEECS-EEEEEEECC-
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeecccEEEEEEecC-CCCEEEcCCC
Confidence 99999999999999999999999999999999999886 6889999765
No 7
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=99.95 E-value=3.4e-28 Score=252.59 Aligned_cols=128 Identities=26% Similarity=0.512 Sum_probs=105.7
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhh---------
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFF--------- 71 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~--------- 71 (622)
|+++|||+|+|+|.|+|+.||||||| |+.+|||++||++|+++++++||+++|+++..+++.......|+
T Consensus 55 La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~ 133 (292)
T 3h8v_A 55 LTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLE 133 (292)
T ss_dssp HHHHTCSEEEEECCCBC-------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSS
T ss_pred HHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccc
Confidence 45789999999999999999999997 78999999999999999999999999999999997522223555
Q ss_pred --ccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecccc--ccceEEEEeCCCCccccccCC
Q 006996 72 --KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG--FLGQVTVHVKGKTECYECQPK 129 (622)
Q Consensus 72 --~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G--~~G~v~vi~p~~t~Cy~C~~~ 129 (622)
+++|+||+|+||+++|++||++|+++++|||++|+.| +.||++++.|+.|+||+|+++
T Consensus 134 ~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~p 195 (292)
T 3h8v_A 134 EGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENAVSGHIQLIIPGESACFACAPP 195 (292)
T ss_dssp TTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECTTSSEEEEEEECTTTSCCTTSSSC
T ss_pred cCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeecceeEEEEEEECCCCCCCHhhcCC
Confidence 6999999999999999999999999999999999985 899999999999999999864
No 8
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=99.94 E-value=2.6e-26 Score=256.32 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=132.5
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCC-CchhhhhccCCEEEE
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP-KFNVEFFKQFNVVLN 79 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~-~~~~~f~~~~DlVi~ 79 (622)
|+++|||+|+|+|+|+|+.|||||||||+.+|||++||++|+++|+++||+++|+++...++.. ....+|+++||+||+
T Consensus 51 La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~ 130 (531)
T 1tt5_A 51 LVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVA 130 (531)
T ss_dssp HHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEE
T ss_pred HHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEE
Confidence 4688999999999999999999999999999999999999999999999999999998877421 123589999999999
Q ss_pred ecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCCCCCCCCcccccCCCCCceeee
Q 006996 80 GLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITSTPSKFVHCI 151 (622)
Q Consensus 80 alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~~~~~~P~CTi~~~P~~~~hcI 151 (622)
|+||..+|.++|++|+.+++|+|++|+.|+.|+++++.|+ ..|++|.+ .+..+|.|+++.+|..++||-
T Consensus 131 ~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~~~p~-~~~~d~~~--~~~~~~lr~~~p~P~~~~~~~ 199 (531)
T 1tt5_A 131 TQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKE-HPVIESHP--DNALEDLRLDKPFPELREHFQ 199 (531)
T ss_dssp ESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEECSC-EEESCCCC--SSCCCCCCSSSCCHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEEEEecCCeEEEEEEcCC-ceeccCCC--CCCCCcccccCCCCCchhhhh
Confidence 9999999999999999999999999999999999999994 55666643 345789999999999998873
No 9
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=99.93 E-value=1.7e-26 Score=243.91 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=128.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCC--------------Cc
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP--------------KF 66 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~--------------~~ 66 (622)
|++.|||+|+|+|.|+|+.|||+|||||+.+|||++||++|+++++++||+++|+++..+|... ..
T Consensus 53 La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~ 132 (340)
T 3rui_A 53 LIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDR 132 (340)
T ss_dssp HHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHH
T ss_pred HHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHH
Confidence 3578999999999999999999999999999999999999999999999999999998776211 11
Q ss_pred hhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEe-------CCCCccccccCCCCC-CC----
Q 006996 67 NVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-------KGKTECYECQPKPAP-KT---- 134 (622)
Q Consensus 67 ~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~-------p~~t~Cy~C~~~~~~-~~---- 134 (622)
..++++++|+||+|+||+++|+++|++|+.+++|+|+++ .|+.||+.++. |+.++||+|.+...| .+
T Consensus 133 l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~G~~G~l~v~~g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~ 211 (340)
T 3rui_A 133 LRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDR 211 (340)
T ss_dssp HHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-ECSSEEEEEECCCCCSSCCCCBCCGGGGSSSCCCCCTTTC
T ss_pred HHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-ecceEEEEEeecccccCCCCCCCeeeeCCCCCCccccccc
Confidence 247899999999999999999999999999999999987 89999998863 568999999964322 11
Q ss_pred --CCcccccCCCCCceeeehhhhHHHHHHHhCC
Q 006996 135 --YPVCTITSTPSKFVHCIVWAKDLLFAKLFGD 165 (622)
Q Consensus 135 --~P~CTi~~~P~~~~hcI~wa~~~~f~~lF~~ 165 (622)
.+.|++...--.++.++ -|.+ +.+.+.+.
T Consensus 212 t~~~~c~v~~p~vg~igs~-qA~E-~lk~l~~~ 242 (340)
T 3rui_A 212 TLDQMSTVTRPGVAMMASS-LAVE-LMTSLLQT 242 (340)
T ss_dssp CCGGGGGCSCHHHHHHHHH-HHHH-HHHHHTSC
T ss_pred ccCCCcceecchHHHHHHH-HHHH-HHHHHhCC
Confidence 14688432111112222 3555 56666654
No 10
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=99.93 E-value=5e-26 Score=231.56 Aligned_cols=128 Identities=26% Similarity=0.470 Sum_probs=119.5
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|+|+|+|+|.|+|+.|||||||||+.+|||++||++++++++++||+++|+++...++... ..++++++|+||+|
T Consensus 47 La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~-~~~~~~~~DvVi~~ 125 (251)
T 1zud_1 47 LAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEA-LKDAVARADVVLDC 125 (251)
T ss_dssp HHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHH-HHHHHHHCSEEEEC
T ss_pred HHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHH-HHHHHhcCCEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999988886433 25788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCC-CccccccCC
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPK 129 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~-t~Cy~C~~~ 129 (622)
+||+.+|.++|++|+.+++|+|.+|+.|+.|++.++.|+. ++||+|.+.
T Consensus 126 ~d~~~~r~~l~~~~~~~~~p~i~~~~~g~~G~v~~~~p~~~~~c~~cl~~ 175 (251)
T 1zud_1 126 TDNMATRQEINAACVALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWP 175 (251)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEEEEEBTEEEEEEECTTCTTCCHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeccccceEEEEEccCCCCCcEEEeCC
Confidence 9999999999999999999999999999999999999987 799999874
No 11
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=99.92 E-value=5e-25 Score=234.72 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=118.1
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++++++||+++|+++..++++.....+ +.++|+||+|
T Consensus 137 La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~-~~~~DlVvd~ 215 (353)
T 3h5n_A 137 LATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHK-VPEADIWVVS 215 (353)
T ss_dssp HHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGGGGG-SCCCSEEEEC
T ss_pred HHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecccCchhhhhH-hccCCEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999999976552234 8999999999
Q ss_pred cCCHH-HHHHHHHHHHHcCCCEEEeccccccceEEEE-eCCCCccccccCC
Q 006996 81 LDNLD-ARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQPK 129 (622)
Q Consensus 81 lDn~~-aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi-~p~~t~Cy~C~~~ 129 (622)
+||+. +|+++|++|+.+++|+|.+|+.|+.|++.++ .|+.++||+|.+.
T Consensus 216 ~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g~~g~~g~~~~p~~~~C~~C~~~ 266 (353)
T 3h5n_A 216 ADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKV 266 (353)
T ss_dssp CCCSTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEECTTTSCCTTTTC-
T ss_pred cCChHHHHHHHHHHHHHhCCCEEEEEEeCCEEEEEEEEcCCCCCChhhcCC
Confidence 99999 9999999999999999999999999999776 5999999999864
No 12
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=99.91 E-value=5.3e-25 Score=223.67 Aligned_cols=139 Identities=32% Similarity=0.508 Sum_probs=120.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|++.|+|+|+|+|.|.|+.|||||||||+.+|||++|+++++++++++||.++|+++...+++.. ..+++.++|+||+|
T Consensus 50 La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~-~~~~~~~~DvVi~~ 128 (249)
T 1jw9_B 50 LASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAE-LAALIAEHDLVLDC 128 (249)
T ss_dssp HHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHH-HHHHHHTSSEEEEC
T ss_pred HHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhH-HHHHHhCCCEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999988886422 24688999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCC-CccccccCCCCCCCCCcccc
Q 006996 81 LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKPAPKTYPVCTI 140 (622)
Q Consensus 81 lDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~-t~Cy~C~~~~~~~~~P~CTi 140 (622)
+||+++|..+|++|+..++|+|.+++.|+.|++.++.|+. ++||+|.+...+...+.|..
T Consensus 129 ~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~g~v~~~~p~~~~~c~~c~~~~~~~~~~~c~~ 189 (249)
T 1jw9_B 129 TDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENALTCVE 189 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHTTCCC-------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeeccceEEEEEEeCCCCCCceEEECCCCCcccccccc
Confidence 9999999999999999999999999999999999999987 79999987543322344543
No 13
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=99.91 E-value=4.5e-25 Score=247.06 Aligned_cols=128 Identities=18% Similarity=0.258 Sum_probs=114.3
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCC--------------Cc
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP--------------KF 66 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~--------------~~ 66 (622)
|++.|||+|+|+|.|+|+.|||+|||||+.+|||++||++|+++++++||+++|+++..+|... ..
T Consensus 345 La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~ 424 (615)
T 4gsl_A 345 LIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDR 424 (615)
T ss_dssp HHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHH
T ss_pred HHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHH
Confidence 4578999999999999999999999999999999999999999999999999999998766211 11
Q ss_pred hhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEe-------CCCCccccccCC
Q 006996 67 NVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-------KGKTECYECQPK 129 (622)
Q Consensus 67 ~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~-------p~~t~Cy~C~~~ 129 (622)
..+++.++|+||+|+||+++|.++|++|+.+++|+|+++ .|+.||+.++. |+.++||+|.+.
T Consensus 425 l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-lG~~Gql~v~~g~~~~~~~~~~~CY~Cl~~ 493 (615)
T 4gsl_A 425 LRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDV 493 (615)
T ss_dssp HHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-ECSSEEEEEECCC------CCCCCTTTSCS
T ss_pred HHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-ccceeEEEEeecccccCCCCCCCceeeCCC
Confidence 246889999999999999999999999999999999986 89999998763 568999999964
No 14
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=99.90 E-value=2.9e-24 Score=240.43 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=129.2
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCC--------------Cc
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP--------------KF 66 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~--------------~~ 66 (622)
|++.|||+|+|+|.|+|+.||||||+||+.+|||++||++|+++++++||+++|+++..+|... ..
T Consensus 346 La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~ 425 (598)
T 3vh1_A 346 LIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDR 425 (598)
T ss_dssp HHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHH
T ss_pred HHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHH
Confidence 4678999999999999999999999999999999999999999999999999999999876211 11
Q ss_pred hhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccccceEEEEe---C----CCCccccccCCCCCC-C----
Q 006996 67 NVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV---K----GKTECYECQPKPAPK-T---- 134 (622)
Q Consensus 67 ~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~---p----~~t~Cy~C~~~~~~~-~---- 134 (622)
..++++++|+||+|+||+++|+.+|++|+.+++|+|.+ +.|+.||+.++. | +.++||+|.+...|. +
T Consensus 426 l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~a-a~G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl~~~~p~~~~~~~ 504 (598)
T 3vh1_A 426 LRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA-ALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDR 504 (598)
T ss_dssp HHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEE-EECSSEEEEEEEC--------CBCCTTTSCSSCSSSCTTTT
T ss_pred HHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEE-EECCccEEEEEccCCCccCCCCCCceeecCccCCCcccccc
Confidence 24688999999999999999999999999999999996 589999998874 3 367999998543221 1
Q ss_pred --CCcccccCCCCCceeeehhhhHHHHHHHhCC
Q 006996 135 --YPVCTITSTPSKFVHCIVWAKDLLFAKLFGD 165 (622)
Q Consensus 135 --~P~CTi~~~P~~~~hcI~wa~~~~f~~lF~~ 165 (622)
.+.|++.+ |.....+...|.+ +.+.+.|.
T Consensus 505 tld~~C~Vl~-p~vgvigslqA~E-alk~Llg~ 535 (598)
T 3vh1_A 505 TLDQMCTVTR-PGVAMMASSLAVE-LMTSLLQT 535 (598)
T ss_dssp TTTBSCCCSC-THHHHHHHHHHHH-HHHHHHSC
T ss_pred ccCCCCCccC-cHHHHHHHHHHHH-HHHHHhCC
Confidence 24687532 2111222336777 77888875
No 15
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.5e-23 Score=243.46 Aligned_cols=145 Identities=18% Similarity=0.318 Sum_probs=129.9
Q ss_pred CcccCccEEEEEeCCccCccccccccCCCccccCchHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEe
Q 006996 1 MVSERQLEAIKIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNG 80 (622)
Q Consensus 1 lv~~GvG~I~IvD~DtIe~SNLnRQfLf~~~dIGk~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~a 80 (622)
|+++|||+|+|+|.|+|+.|||+|||||+.+|||++||++++++|+++||.++|+++...+++ +++.+||+||+|
T Consensus 46 La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~~~l~~-----~~l~~~DvVv~~ 120 (1015)
T 3cmm_A 46 VVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDV-----TQLSQFQVVVAT 120 (1015)
T ss_dssp HHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECCCCCCS-----TTGGGCSEEEEC
T ss_pred HHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEecCCCCH-----HHHhcCCEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999888753 688999999999
Q ss_pred cC-CHHHHHHHHHHHHHcCCCEEEeccccccceEEEEeCCCCccccccCCC--CCCCCCcccccCCCCCceeeehhhh
Q 006996 81 LD-NLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP--APKTYPVCTITSTPSKFVHCIVWAK 155 (622)
Q Consensus 81 lD-n~~aR~~vn~~c~~~~iPlI~sGt~G~~G~v~vi~p~~t~Cy~C~~~~--~~~~~P~CTi~~~P~~~~hcI~wa~ 155 (622)
.| |..+|++||++|+.+++|+|.+++.|+.|++++. .++||+|.... .|.+.++|+| +.| .++||+.+-+
T Consensus 121 ~d~~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v~~d---~~~~~~c~~~~~~~p~~~~i~~i-~~p-~~v~~l~~~~ 193 (1015)
T 3cmm_A 121 DTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVD---LGDEFTVLDPTGEEPRTGMVSDI-EPD-GTVTMLDDNR 193 (1015)
T ss_dssp TTSCHHHHHHHHHHHHHHTCEEEEEEEETTEEEEEEE---CCSCEEESBSSCCCCCEEEEEEE-CTT-CEEEESTTCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEec---CCCceEEeeCCCCCCccccccCC-CCC-ceeEeeeccc
Confidence 99 9999999999999999999999999999999763 47899998653 4566778888 555 4799987544
No 16
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=99.01 E-value=6.5e-10 Score=97.09 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=74.3
Q ss_pred cCCcccEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcceeec----CcEEEeeCCCccHHHHHHHhhhhhcccccCCCCC
Q 006996 402 VCSETPLSLEINTSRSKLRDFVEKIVKA--KLGINFPLIMHG----SNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPV 475 (622)
Q Consensus 402 vC~~~~~~l~i~~~~~TL~~li~~ilk~--~~~~~~~~I~~g----~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i 475 (622)
+|+.....++++. ++||++||+.+ .+ +|.|..|+|+.+ ++.||.... ...+++++.||.|+|.|| |+
T Consensus 1 ~Cg~~~~~l~v~~-~~TL~~lid~L-~~~p~~qlk~PSltt~~~~~~k~LYmq~p---p~Lee~Tr~NL~k~l~eL--gl 73 (98)
T 1y8x_B 1 GSSQLPQNIQFSP-SAKLQEVLDYL-TNSASLQMKSPAITATLEGKNRTLYMQSV---TSIEERTRPNLSKTLKEL--GL 73 (98)
T ss_dssp ----CCCCEECCT-TCBHHHHHHHH-HHCTTCCCSSCEEEEEETTEEEEEECSSC---HHHHHHHHHHHHSBSGGG--TC
T ss_pred CCCCCcEEEEECC-chhHHHHHHHH-HhChHhhccCCeeeeecCCCCCeEEEeCc---HHHHHHhHhhhhCCHHHh--CC
Confidence 4877677788884 78999999985 55 789999999998 899998763 345577999999999999 99
Q ss_pred CCCcEEEEeeCCCCeEEEEEEEec
Q 006996 476 TNGTMLTVEDLQQELTCNINIKHR 499 (622)
Q Consensus 476 ~~g~~l~v~D~~~~~~~~l~i~~~ 499 (622)
.+|++|.|+|..-...+.+.|.+.
T Consensus 74 ~~g~ei~VtD~~~p~~~~~rl~f~ 97 (98)
T 1y8x_B 74 VDGQELAVADVTTPQTVLFKLHFT 97 (98)
T ss_dssp CTTCEEEEECTTCSSCEEEEEEC-
T ss_pred CCCCEEEEECCCCcccEEEEEEec
Confidence 999999999999988888888753
No 17
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=98.98 E-value=5e-10 Score=101.11 Aligned_cols=83 Identities=17% Similarity=0.362 Sum_probs=67.5
Q ss_pred cEEEEEcC---CCCCHHHHHHHHHHHhcCCCC-cceee--cCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcE
Q 006996 407 PLSLEINT---SRSKLRDFVEKIVKAKLGINF-PLIMH--GSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTM 480 (622)
Q Consensus 407 ~~~l~i~~---~~~TL~~li~~ilk~~~~~~~-~~I~~--g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~ 480 (622)
+..+.|+. .++||++||+. ++.+||+.. .+|.- +.++||+++ |++||+|+|++| |+++|++
T Consensus 7 Rgvl~v~~~dl~~~TL~dLV~~-l~~~~gy~~eiSV~~~~~~rLLyD~D----------fDDnl~k~L~dL--gv~~gsf 73 (127)
T 3onh_A 7 RGVIKLSSDCLNKMKLSDFVVL-IREKYSYPQDISLLDASNQRLLFDYD----------FEDLNDRTLSEI--NLGNGSI 73 (127)
T ss_dssp EEEEEECHHHHHHCBHHHHHHH-HHHHHTCCSSEEEEETTTTEEEEETT----------BCTTTTSBTTTT--TCCTTCE
T ss_pred EEEEEeCcccccccCHHHHHHH-HHHhcCCCCcEEEEecCCCCeEeCCC----------ccccccCcHHHc--CcCCCcE
Confidence 45677765 67999999999 699999975 34442 368999987 468999999999 9999999
Q ss_pred EEEeeCCCCe----EEEEEEEeccCC
Q 006996 481 LTVEDLQQEL----TCNINIKHREEF 502 (622)
Q Consensus 481 l~v~D~~~~~----~~~l~i~~~~~~ 502 (622)
|+|.|...+. .++|+|..+++.
T Consensus 74 Ltv~DEdde~~~r~~lelyi~~~~~~ 99 (127)
T 3onh_A 74 ILFSDEEGDTMIRKAIELFLDVDDEL 99 (127)
T ss_dssp EEEEESCCSSEEECCEEEEEEECTTC
T ss_pred EEEEccccccccccCEEEEEEecCCC
Confidence 9999998764 577888887654
No 18
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=98.45 E-value=9.8e-08 Score=98.12 Aligned_cols=62 Identities=18% Similarity=0.369 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHh----------------hhhccCCccCCCCcHhHHHHHHHHHHHHHHHcCCCC-CCHHHHHhhhccc
Q 006996 282 RIFLEALKLFFAK----------------REKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISL-HSLFEAKGIAGNI 343 (622)
Q Consensus 282 ~~f~~~~~~~~~~----------------~~~~~~~l~FDKDD~~h~dFV~AaaNLRA~~f~I~~-~s~~~vK~iAGnI 343 (622)
..|...+++|+.. .+..+.||.||..|+.|++||.|||||||.+|||++ .++-.+..++.++
T Consensus 101 k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~d~~~i~~~~~~~ 179 (276)
T 1z7l_A 101 TQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSV 179 (276)
T ss_dssp HHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCccccccCCCcccCCCCCCCCCcccCCCchHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcC
Confidence 4677788888865 123478999999999999999999999999999986 5666666665554
No 19
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=92.46 E-value=0.11 Score=54.77 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=37.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCccc---ceeeEeecccccceeecccCCCCCCCCcccCCc
Q 006996 344 VHAVATTNAIIAGLIVIEAIKVLLKDTDK---YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 405 (622)
Q Consensus 344 IPAIATTnAiVAGl~vlE~~Kvl~~~~~~---~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~ 405 (622)
.|.+++++++|++++++|++|+|.+..+. -+...++...... ...+.+++|.|++|+.
T Consensus 291 ~gv~~~~~~iig~l~a~Ealk~l~g~~~~~~~g~l~~~d~~~~~~----~~~~~~~~p~C~~Cg~ 351 (353)
T 3h5n_A 291 PATFAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIGIWSDEIKI----HSQNMGRSPVCSVCGN 351 (353)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCSSCCTTBTEEEEECSSSSCE----EEEECCCCTTCTTTC-
T ss_pred CCchhhHHHHHHHHHHHHHHHHhcCCCCcccCCeEEEEECCCCEE----EEEccCCCcCCCCCCC
Confidence 36688899999999999999999985322 2322222211111 1223468999999985
No 20
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=92.19 E-value=0.17 Score=50.61 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=38.3
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHhcCccc--ceeeEeecccccceeecccCCCCCCCCcccCC
Q 006996 344 VHAVATTNAIIAGLIVIEAIKVLLKDTDK--YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCS 404 (622)
Q Consensus 344 IPAIATTnAiVAGl~vlE~~Kvl~~~~~~--~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~ 404 (622)
.+.++.++++++++++.|++|+|.+..+. .+..+++..... +.. .+.+++|.|++|+
T Consensus 190 ~g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~~~---~~~-~~~~~~~~C~~C~ 248 (249)
T 1jw9_B 190 AGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQ---FRE-MKLMRNPGCEVCG 248 (249)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTE---EEE-EECCCCTTCTTTC
T ss_pred cCCcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCCCE---EEE-EecCCCcCCCCcC
Confidence 35677889999999999999999987543 233333332111 111 1235789999997
No 21
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=91.44 E-value=0.1 Score=53.72 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=40.3
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHhcCcccceeeEeecccccceeecccCCCCCCCCcc--cCCc
Q 006996 341 GNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRMTYCLEHITKKMLLMPVEPYEPNKSCY--VCSE 405 (622)
Q Consensus 341 GnIIPAIATTnAiVAGl~vlE~~Kvl~~~~~~~r~~f~~~~~~~~~~~~~~~~~~pn~~C~--vC~~ 405 (622)
|..-+++++|.++|++++++|++|+|.|..+..|...++..... + ......++|.|+ +|+.
T Consensus 211 gvc~~~l~~~~g~vgslqA~EalK~L~g~g~~~~ll~~D~~~~~---~-~~~~~~~~p~C~~~~Cg~ 273 (292)
T 3h8v_A 211 GVCAASLPTTMGVVAGILVQNVLKFLLNFGTVSFYLGYNAMQDF---F-PTMSMKPNPQCDDRNCRK 273 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCSEEEEETTTTB---C-CEECCCCCTTCSCHHHHH
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCCCc---E-EEEecCCCcCcCccccCC
Confidence 33335689999999999999999999986543343333222111 1 122346899998 9984
No 22
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=87.83 E-value=0.8 Score=45.70 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=37.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcCccc-ceeeEeecccccceeecccCCCCCCCCcccCCc
Q 006996 345 HAVATTNAIIAGLIVIEAIKVLLKDTDK-YRMTYCLEHITKKMLLMPVEPYEPNKSCYVCSE 405 (622)
Q Consensus 345 PAIATTnAiVAGl~vlE~~Kvl~~~~~~-~r~~f~~~~~~~~~~~~~~~~~~pn~~C~vC~~ 405 (622)
+.++.+.++++++++.|++|+|.+.... .+..+++..... +. ..+.+++|.|++|+.
T Consensus 188 g~~~p~~~~~g~~~A~e~lk~l~g~~~~~~~~~~~d~~~~~---~~-~~~~~~~p~C~~C~~ 245 (251)
T 1zud_1 188 GVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQ---WR-SLALRRASGCPVCGG 245 (251)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHTCCCCCSEEEEEETTTTE---EE-EEECCCCTTCTTTCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCE---EE-EEecCCCcCCCccCC
Confidence 4567788999999999999999986432 333333322111 11 123457899999985
No 23
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=72.28 E-value=10 Score=32.25 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=44.3
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCC-----CccHHHHHHHhhhhhcccccCCCCCCCCcE
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGD-----DLDEVEVANYAANLEKVLSQLPSPVTNGTM 480 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~-----~l~~~~~~~~~~nl~k~L~el~~~i~~g~~ 480 (622)
..+.+++. ..+|+.+|-.+ +..+.|+.... .+++|.... .|. +-.++|+++ ++.+|+.
T Consensus 27 ~~~e~~v~-~~~TV~~LK~k-Ie~~~Gip~~~----QrLi~~g~~g~~~~~L~---------~D~~tL~~Y--~I~~g~~ 89 (97)
T 2kj6_A 27 FSADARFS-PQMSVEAVKEK-LWKKCGTSVNS----MALELYDDSGSKVAVLS---------DDSRPLGFF--SPFDGFR 89 (97)
T ss_dssp CCEEEEEC-TTCCHHHHHHH-HHHHHCCCTTS----EEEEEECSSSCBCCCSS---------GGGSCHHHH--CCCSCCE
T ss_pred eEEEEEeC-CCChHHHHHHH-HHHHHCcCHHH----eEEEEecCCCcccceec---------CCcCCHHHC--CCCCCCE
Confidence 45667777 47899999998 57888876532 234443211 011 225889999 8999999
Q ss_pred EEEeeCC
Q 006996 481 LTVEDLQ 487 (622)
Q Consensus 481 l~v~D~~ 487 (622)
|.+.|.+
T Consensus 90 Ihlvd~~ 96 (97)
T 2kj6_A 90 LHIIDLD 96 (97)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999853
No 24
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=70.80 E-value=2.5 Score=44.31 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCc
Q 006996 346 AVATTNAIIAGLIVIEAIKVLLKDT 370 (622)
Q Consensus 346 AIATTnAiVAGl~vlE~~Kvl~~~~ 370 (622)
-++.+.++||+++++|++|+|.+..
T Consensus 219 v~~p~vg~igs~qA~E~lk~l~~~~ 243 (340)
T 3rui_A 219 VTRPGVAMMASSLAVELMTSLLQTK 243 (340)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred eecchHHHHHHHHHHHHHHHHhCCC
Confidence 4678889999999999999999864
No 25
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=69.92 E-value=11 Score=29.59 Aligned_cols=61 Identities=18% Similarity=0.344 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeC
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDL 486 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~ 486 (622)
...++++ .+.|+++|-..| .++.|+.... .+++|. +..|+ + .++|+++ |+++|+.|.+.+.
T Consensus 15 ~~~~~v~-~~~tV~~LK~~i-~~~~~i~~~~----qrL~~~-gk~L~--------d--~~tL~~~--~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 15 KWEVNVA-PESTVLQFKEAI-NKANGIPVAN----QRLIYS-GKILK--------D--DQTVESY--HIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----EEEEET-TEECC--------T--TSBTGGG--TCCTTCEEEEEEC
T ss_pred EEEEEEC-CCCcHHHHHHHH-HHHhCCCHHH----EEEEEC-CeEcC--------C--CCCHHHc--CCCCCCEEEEEEc
Confidence 3466777 468999999984 6777765432 133442 11121 1 4789999 9999999888653
No 26
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=65.60 E-value=3.5 Score=33.91 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=38.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
+|+++ .+.|+++|.++| .++++...+. |..+.. +...+ .....++|+++ |+++|+.|.|.
T Consensus 17 Ri~v~-~~~t~~~L~~~I-~~~~~i~~~~~~l~~~~~----p~~~l--------~~~~~~~l~~l--gl~hGd~l~l~ 78 (80)
T 2pjh_A 17 RITAT-KRETAATFLKKV-AKEFGFQNNGFSVYINRN----KTGEI--------TASSSKSLHLL--KIKHGDLLFLF 78 (80)
T ss_dssp ECCCC-SSCCHHHHHHHH-HHHTCCCTTTCCCCCSCC----GGGGS--------SSCCCCTTTTT--CCCTTCCEEC-
T ss_pred EEEcC-CcChHHHHHHHH-HHHcCCCCCcceEEecCC----CCCcc--------cCCCCCCHHHc--CCCCCCEEEEe
Confidence 45555 457999999994 7788876433 444321 10001 11246789999 99999999875
No 27
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=64.40 E-value=22 Score=30.04 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=42.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEee-CC---CccHHHHHHHhhhhhcccccCCCCCCCCcEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEV-GD---DLDEVEVANYAANLEKVLSQLPSPVTNGTMLT 482 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~-~~---~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~ 482 (622)
.+.++++ ..+|+.+|-.+ +..+.|+.... .+++|.. +. .+. .-.++|++. ++.+|+.|.
T Consensus 29 ~~~~~v~-~~~TV~~LK~k-I~~~~GiP~~~----QrL~~~~~g~~~~~L~---------~D~~tL~~Y--~i~~gstih 91 (95)
T 2kjr_A 29 AFEVKLA-KDLTVAQLKTK-LEILTGGCAGT----MKVQVFKGDTCVSTMD---------NNDAQLGYY--ANSDGLRLH 91 (95)
T ss_dssp EEEEEEE-TTCBHHHHHHH-HHHHHCSCTTT----EEEEEEETTEEEEECC---------CTTSBHHHH--CCSSSCEEE
T ss_pred EEEEEeC-ccCHHHHHHHH-HHHHHCcCHHH----eEEEEecCCcccceeC---------CCCCCHhHC--CcCCCCEEE
Confidence 4567777 46899999998 57788876532 2344432 10 011 125789999 899999999
Q ss_pred Eee
Q 006996 483 VED 485 (622)
Q Consensus 483 v~D 485 (622)
+.|
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 998
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=61.28 E-value=17 Score=28.16 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
++.++++ .+.|+.+|-..| .++.|+..... +++|. +..|+ -+++|+++ |+.+|+.|.+.
T Consensus 12 ~~~~~v~-~~~tv~~lK~~i-~~~~~i~~~~q----~L~~~-g~~L~----------d~~tL~~~--~i~~g~~i~l~ 70 (76)
T 1ndd_A 12 EIEIDIE-PTDKVERIKERV-EEKEGIPPQQQ----RLIYS-GKQMN----------DEKTAADY--KILGGSVLHLV 70 (76)
T ss_dssp EEEEECC-TTCBHHHHHHHH-HHHHCCCGGGE----EEEET-TEECC----------TTSBGGGG--TCCTTCEEEEE
T ss_pred EEEEEEC-CCChHHHHHHHH-HHHHCcChHHE----EEEEC-CEECC----------CCCcHHHc--CCCCCCEEEEE
Confidence 3456776 468999999984 67778754321 24442 11121 14789999 99999987654
No 29
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=60.73 E-value=18 Score=29.68 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=40.1
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
..+.++++ ...|+.+|-..| .++.|+.... .+++|.. ..|+ -+++|+++ |+++|+.|.+.
T Consensus 28 ~~~~l~v~-~~~TV~~LK~~I-~~~~gip~~~----qrL~~~G-k~L~----------D~~tL~~~--gi~~g~~i~l~ 87 (91)
T 3v6c_B 28 THITLEVE-PSDTIENVKAKI-QDKEGIPPDQ----QRLIFAG-KQLE----------DGRTLSDY--NIQKESTLHLV 87 (91)
T ss_dssp CEEEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----CEEEETT-EECC----------TTCBTGGG--TCCTTCEEEEE
T ss_pred CEEEEEEC-CCCCHHHHHHHH-HhhhCCChhh----EEEEECC-eECC----------CcCcHHHC--CCCCCCEEEEE
Confidence 34567777 478999999984 6777875432 2444522 1121 14789999 99999987764
No 30
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=60.52 E-value=9 Score=43.22 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhcCc
Q 006996 346 AVATTNAIIAGLIVIEAIKVLLKDT 370 (622)
Q Consensus 346 AIATTnAiVAGl~vlE~~Kvl~~~~ 370 (622)
.++.+.++||+++++|++|+|.+..
T Consensus 511 Vl~P~vgiigs~qA~EaLk~Ll~~g 535 (615)
T 4gsl_A 511 VTRPGVAMMASSLAVELMTSLLQTK 535 (615)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred eecchHHHHHHHHHHHHHHHHhCCC
Confidence 4667889999999999999999865
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=60.41 E-value=17 Score=28.09 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ .+.|+.+|-..| .++.|+.... .+++|. +..|+ + +++|+++ |+.+|+.|.+.
T Consensus 12 ~~~i~v~-~~~tv~~lK~~i-~~~~~i~~~~----q~L~~~-g~~L~--------d--~~tL~~~--~i~~g~~i~l~ 70 (76)
T 3a9j_A 12 TITLEVE-PSDTIENVKAKI-QDKEGIPPDQ----QRLIFA-GKQLE--------D--GRTLSDY--NIQRESTLHLV 70 (76)
T ss_dssp EEEEECC-TTCBHHHHHHHH-HHHHCCCGGG----EEEEET-TEECC--------T--TCBTGGG--TCCTTCEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHHH-HHHHCcCHHH----eEEEEC-CeECC--------C--CCcHHHc--CCCCCCEEEEE
Confidence 3456676 468999999984 6777865432 234442 11121 1 5789999 99999887654
No 32
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=59.30 E-value=32 Score=34.62 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=31.7
Q ss_pred hhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccc
Q 006996 68 VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 109 (622)
Q Consensus 68 ~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~ 109 (622)
.+++.++|+||+++ ++.+-...-..|+++++|+|- ||+|+
T Consensus 68 ~~ll~~~DVVIDfT-~p~a~~~~~~~al~~G~~vVi-gTTG~ 107 (272)
T 4f3y_A 68 ERVCAEADYLIDFT-LPEGTLVHLDAALRHDVKLVI-GTTGF 107 (272)
T ss_dssp HHHHHHCSEEEECS-CHHHHHHHHHHHHHHTCEEEE-CCCCC
T ss_pred HHHhcCCCEEEEcC-CHHHHHHHHHHHHHcCCCEEE-ECCCC
Confidence 35677899999998 566666677789999999884 77776
No 33
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=58.22 E-value=10 Score=38.69 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=32.1
Q ss_pred hhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccccc
Q 006996 68 VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 109 (622)
Q Consensus 68 ~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~ 109 (622)
.+++.++|+||+++ ++.+-...-..|.++++|+| .||+|+
T Consensus 83 ~~ll~~aDVvIDFT-~p~a~~~~~~~~l~~Gv~vV-iGTTG~ 122 (288)
T 3ijp_A 83 ESAFSNTEGILDFS-QPQASVLYANYAAQKSLIHI-IGTTGF 122 (288)
T ss_dssp HHHTTSCSEEEECS-CHHHHHHHHHHHHHHTCEEE-ECCCCC
T ss_pred HHHhcCCCEEEEcC-CHHHHHHHHHHHHHcCCCEE-EECCCC
Confidence 35678999999998 56666666778999999999 667776
No 34
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=57.42 E-value=21 Score=28.63 Aligned_cols=60 Identities=20% Similarity=0.382 Sum_probs=40.0
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
..+.++++ ...|+.+|-..| .++.|+.... .+++|... .|+ -.++|+++ ++.+|+.|.+.
T Consensus 23 ~~~~~~v~-~~~tV~~lK~~i-~~~~gip~~~----qrL~~~G~-~L~----------d~~tL~~~--~i~~~~~i~l~ 82 (88)
T 3dbh_I 23 KEIEIDIE-PTDKVERIKERV-EEKEGIPPQQ----QRLIYSGK-QMN----------DEKTAADY--KILGGSVLHLV 82 (88)
T ss_dssp CEEEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----CCEEETTE-ECC----------TTSBGGGG--TCCTTCEEEEC
T ss_pred CEEEEEEC-CCCCHHHHHHHH-HHHHCcCHHH----EEEEECCe-ECC----------CCCcHHHc--CCCCCCEEEEE
Confidence 34567777 468999999984 6777865432 24555321 121 15789999 99999987763
No 35
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=57.12 E-value=36 Score=27.71 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEee
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVED 485 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D 485 (622)
...++++ ...|+.+|-.. +.++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+..
T Consensus 23 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----qrL~~~-Gk~L~----------D~~tL~~~--gi~~g~~l~l~~ 82 (85)
T 2kd0_A 23 SIPLSVS-PDCTVKDLKSQ-LQPITNVLPRG----QKLIFK-GKVLV----------ETSTLKQS--DVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEEC-TTSBHHHHHHH-HHHHHCCCTTT----CEEEET-TEECC----------TTCBTTTT--TCCTTEEEEEEC
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCcChHH----EEEEEC-CeECC----------CcCCHHHC--CCCCCCEEEEEE
Confidence 3456776 46899999998 46777765422 234442 11121 14789999 999999887754
No 36
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=56.61 E-value=38 Score=28.49 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-.. +.++.|+.... +.++++.| + -.++|+++ |+.+|+.|.+.
T Consensus 36 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~qrLi~~Gk~L-------~----------D~~tL~~~--gI~~g~~I~l~ 94 (101)
T 2klc_A 36 KEEFAVP-ENSSVQQFKEE-ISKRFKSHTDQLVLIFAGKIL-------K----------DQDTLSQH--GIHDGLTVHLV 94 (101)
T ss_dssp EEEEEEC-SCCCHHHHHHH-HHHHHTCCGGGEEEEETTEEE-------C----------TTCCTGGG--TCCTTCEEEEE
T ss_pred EEEEEEC-CCCCHHHHHHH-HHHHHCcChhhEEEEECCEEC-------C----------CcCcHHHc--CCCCCCEEEEE
Confidence 4567777 46899999998 46777865432 23333332 1 14789999 99999988776
Q ss_pred eC
Q 006996 485 DL 486 (622)
Q Consensus 485 D~ 486 (622)
..
T Consensus 95 ~~ 96 (101)
T 2klc_A 95 IK 96 (101)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 37
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=56.45 E-value=23 Score=28.10 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=38.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
++.++++ ...|+.+|...| .++.++..... +++|... .|+ -+++|+++ ++.+|+.|.+.
T Consensus 15 ~~~~~v~-~~~tV~~lK~~i-~~~~~ip~~~q----rL~~~g~-~L~----------d~~tL~~~--~i~~~~~i~l~ 73 (85)
T 3n3k_B 15 TIILEVE-PSDTIENVKAKI-QDKEGIPPDQQ----RLIFAGK-QLE----------DGRTLSDY--NIHNHSALYLL 73 (85)
T ss_dssp EEEEECC-TTCBHHHHHHHH-HHHHCCCGGGE----EEEETBE-ECC----------TTCBTTTT--TCCTTCEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHHH-HHHHCCCHHHE----EEEECCe-ECC----------CCCCHHHC--CCCCCCEEEEE
Confidence 3456676 468999999984 67778765332 3455321 121 14689999 89999876653
No 38
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=56.16 E-value=25 Score=27.69 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-..| .++.|+.... .+++|.. ..|+ + .++|+++ |+.+|+.|.+.
T Consensus 16 ~~~~~v~-~~~tV~~lK~~i-~~~~gip~~~----qrL~~~G-~~L~--------d--~~tL~~~--~i~~~~~l~l~ 74 (79)
T 3phx_B 16 SSTYEVR-LTQTVAHLKQQV-SGLEGVQDDL----FWLTFEG-KPLE--------D--QLPLGEY--GLKPLSTVFMN 74 (79)
T ss_dssp EEEEEEC-TTSBHHHHHHHH-HHHHTCCGGG----EEEEETT-EECC--------T--TSBGGGG--TCCTTCEEEEE
T ss_pred EEEEEEC-CcChHHHHHHHH-HhhcCCCHHH----EEEEECC-EECC--------C--CCcHHHC--CCCCCCEEEEE
Confidence 4567777 467999999984 6777875433 1344421 1121 1 5789999 99999987653
No 39
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=55.26 E-value=29 Score=28.30 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ .+.|+.+|-.. +.++.|+.... .+++|. +..|+ -+++|+++ |+.+|+.|.+.
T Consensus 21 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----qrL~~~-Gk~L~----------D~~tL~~~--gi~~g~~i~l~ 79 (88)
T 1sif_A 21 TFTVEME-PSDTIENLKAK-IQDKEGIPPDQ----QRLIFA-GKQLE----------DGRTLSDY--NIQKESTLHLV 79 (88)
T ss_dssp EEEEECC-TTSBHHHHHHH-HHHHHCCCGGG----CEEEET-TEECC----------TTSBSGGG--TCCTTCEEEEE
T ss_pred EEEEEEC-CCChHHHHHHH-HHHHHCcChhh----EEEEEC-CEECC----------CCCcHHHc--CCCCCCEEEEE
Confidence 3456666 46899999998 46777865432 234442 11121 15789999 99999877653
No 40
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.52 E-value=28 Score=27.32 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=37.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ .+.|+.+|-.. +.++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+
T Consensus 19 ~~~~~v~-~~~tV~~LK~~-i~~~~~i~~~~----qrL~~~-gk~L~----------d~~tL~~~--~i~~g~~i~l 76 (81)
T 2dzi_A 19 ECSLQVP-EDELVSTLKQL-VSEKLNVPVRQ----QRLLFK-GKALA----------DGKRLSDY--SIGPNSKLNL 76 (81)
T ss_dssp EEEEEEC-SSCBHHHHHHH-HHHHTCCCTTT----CEEEET-TEECC----------TTSBGGGG--TCCSSBCCEE
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCcCHHH----EEEEEC-CeECC----------CCCcHHHc--CCCCCCEEEE
Confidence 3456777 46899999998 46777765422 234442 21121 14789999 9999987765
No 41
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.90 E-value=33 Score=28.05 Aligned_cols=61 Identities=16% Similarity=0.334 Sum_probs=39.4
Q ss_pred cEEEEEcCC----CCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcE
Q 006996 407 PLSLEINTS----RSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTM 480 (622)
Q Consensus 407 ~~~l~i~~~----~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~ 480 (622)
...++++.. ..|+.+|-.. +.++.|+.... |.++++.| + .-.++|+++ |+++|+.
T Consensus 18 ~~~i~v~~~~~~~~~TV~~LK~~-i~~~~gip~~~qrL~~~Gk~L-------~---------D~~~~L~~~--~i~~g~~ 78 (92)
T 1wxv_A 18 KHDLHVTSQQGSSEPVVQDLAQV-VEEVIGVPQSFQKLIFKGKSL-------K---------EMETPLSAL--GIQDGCR 78 (92)
T ss_dssp EEEEEECCCSSSSSCBHHHHHHH-HHHHTCCCTTTCEEEETTEEE-------C---------CSSSBHHHH--TCCSSEE
T ss_pred EEEEEECCCcCcccCcHHHHHHH-HHHHHCcCHHHEEEEECCeec-------C---------CCcccHHHC--CCCCCCE
Confidence 345677754 4899999998 46777765432 33333332 1 114679999 8999988
Q ss_pred EEEeeC
Q 006996 481 LTVEDL 486 (622)
Q Consensus 481 l~v~D~ 486 (622)
|.+...
T Consensus 79 i~l~~~ 84 (92)
T 1wxv_A 79 VMLIGK 84 (92)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 877653
No 42
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.40 E-value=42 Score=29.61 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ .+.|+.+|-..| .++.|+.... +.++++.| + -.++|+++ ||.+|+.|.+.
T Consensus 43 ~~~l~v~-~~~TV~~LK~~I-~~~~gip~~~QrLi~~Gk~L-------~----------D~~tL~dy--gI~~gstI~lv 101 (125)
T 1j8c_A 43 KEEFAVP-ENSSVQQFKEAI-SKRFKSQTDQLVLIFAGKIL-------K----------DQDTLIQH--GIHDGLTVHLV 101 (125)
T ss_dssp EEEEEEC-TTCCHHHHHHHH-HHHHCSCSSSEEEEETTEEE-------S----------TTSCGGGT--TCSSSEEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHHH-HHHHCcCcceEEEEECCEEc-------C----------CCCCHHHc--CCCCCCEEEEE
Confidence 3456666 468999999984 6777765432 23333332 1 14789999 99999877665
Q ss_pred eC
Q 006996 485 DL 486 (622)
Q Consensus 485 D~ 486 (622)
..
T Consensus 102 ~~ 103 (125)
T 1j8c_A 102 IK 103 (125)
T ss_dssp EC
T ss_pred ec
Confidence 44
No 43
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=53.36 E-value=24 Score=29.03 Aligned_cols=58 Identities=21% Similarity=0.356 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+.+|-..| .++.|+..... +++|.. ..|+ -.++|+++ ++.+|+.|.+
T Consensus 13 ~~~~~v~-~~~TV~~LK~~i-~~~~gip~~~q----rL~~~G-~~L~----------d~~tL~~~--~i~~~~~i~l 70 (96)
T 3k9o_B 13 TITLEVE-PSDTIENVKAKI-QDKEGIPPDQQ----RLIFAG-KQLE----------DGRTLSDY--NIQKESTLHL 70 (96)
T ss_dssp EEEEECC-TTCBHHHHHHHH-HHHHCCCGGGE----EEEETT-EECC----------TTSBTGGG--TCCTTCEEEE
T ss_pred EEEEEEC-CCCCHHHHHHHH-HhhhCCChhHE----EEEECC-EECC----------CCCcHHHc--CCCCCCEEEE
Confidence 3456776 478999999984 67778755332 344421 1121 14789999 8999875443
No 44
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=53.26 E-value=34 Score=28.38 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeC
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDL 486 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~ 486 (622)
.+.+.++ .+.|+++|-..| .++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+...
T Consensus 12 ~~~~~v~-~~~TV~~LK~~I-~~~~gi~~~~----qrL~~~-Gk~L~----------D~~tL~~~--gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 12 TITLEVE-PSDTIENVKAKI-QDKEGIPPDQ----QRLIFA-GKQLE----------DGRTLSDY--NIQKESTLHLVLR 72 (98)
T ss_dssp EEEEECC-TTCBHHHHHHHH-HHHTCCCGGG----EEEEET-TEECC----------TTSBTGGG--TCCTTCEEEEEEC
T ss_pred EEEEEEC-CCCcHHHHHHHH-HHHHCcChhh----EEEEEC-CEECC----------CCCCHHHc--CCCCCCEEEEEEe
Confidence 3456666 467999999984 6777875432 234442 21121 15789999 9999988776543
No 45
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=53.21 E-value=30 Score=27.42 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-..| .++.++.... .+++|.. ..|+ -.++|+++ ++.+|+.|.+.
T Consensus 15 ~~~~~v~-~~~tV~~lK~~i-~~~~~i~~~~----qrL~~~g-~~L~----------d~~tL~~~--~i~~~~~l~l~ 73 (85)
T 3mtn_B 15 TITLEVE-PSDTIENVKAKI-QDKEGIPPDQ----QRLIFAG-KQLE----------DGRTLSDY--NIQKWSTLFLL 73 (85)
T ss_dssp EEEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----CEEEETT-EECC----------TTSBTGGG--TCCTTCEEEEE
T ss_pred EEEEEEC-CCCCHHHHHHHH-HHHHCcChHH----EEEEECC-EECC----------CCCCHHHc--CCCCCCEEEEE
Confidence 4567777 468999999984 6777765432 2344421 1121 14789999 89999877654
No 46
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.05 E-value=35 Score=28.41 Aligned_cols=68 Identities=18% Similarity=0.097 Sum_probs=43.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCC-C-ccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGD-D-LDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~-~-l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.+.+. ..+|+++|-.. +.+.+|+..... ++.|.... + ..- .-.+-.++|..+ |+.+|..|.|.
T Consensus 24 ~~e~~l~-~~~TV~~LK~~-i~~~~gip~~~q----~L~~~~~~~~~~~~-----~L~~d~~~L~~y--~i~~G~~I~V~ 90 (97)
T 1wjn_A 24 ILEKQLP-DSMTVQKVKGL-LSRLLKVPVSEL----LLSYESSKMPGREI-----ELENDLQPLQFY--SVENGDCLLVR 90 (97)
T ss_dssp CEEEEEE-TTSBHHHHHHH-HHTTTTCCTTTC----EEEEECTTSCSCEE-----ECCCSSSBSGGG--TCCTTCEEEEE
T ss_pred EEEEECC-CCCCHHHHHHH-HHHHHCCChhHe----EEEEEcCCCCceee-----ccCCCcccHhhc--CCCCCCEEEEE
Confidence 4455666 57999999998 688888766432 23333111 0 000 001336789999 89999999999
Q ss_pred eCC
Q 006996 485 DLQ 487 (622)
Q Consensus 485 D~~ 487 (622)
|..
T Consensus 91 d~~ 93 (97)
T 1wjn_A 91 WSG 93 (97)
T ss_dssp CCS
T ss_pred ecC
Confidence 853
No 47
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.97 E-value=41 Score=27.88 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=41.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEee--CCC---ccHHHHHHHhhhhhcccccCCCCCCCCcEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEV--GDD---LDEVEVANYAANLEKVLSQLPSPVTNGTML 481 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~--~~~---l~~~~~~~~~~nl~k~L~el~~~i~~g~~l 481 (622)
...+++. ..+|+.+|-.+ +..+.|+.... .+++|.. +.. +. .-.++|.+. |+.+|+.|
T Consensus 20 ~~~~~v~-~~~TV~~lK~k-i~~~~gip~~~----qrL~~~~~~g~~~~~l~---------~D~~tL~~y--~i~~g~~l 82 (95)
T 1v6e_A 20 RSEKRYS-RSLTIAEFKCK-LELVVGSPASC----MELELYGADDKFYSKLD---------QEDALLGSY--PVDDGCRI 82 (95)
T ss_dssp CEEEEEC-TTSBHHHHHHH-HHHHTCSCTTT----CBCEEECSSSCEEEECC---------CSSSBTTSS--SCCTTCEE
T ss_pred eEEEEcC-ccCHHHHHHHH-HHHHHCCCHHH----eEEEEeCCCCccccccC---------CCcCCHhHC--CCCCCCEE
Confidence 4567777 46899999998 57788875432 2333321 110 11 115789999 99999999
Q ss_pred EEeeC
Q 006996 482 TVEDL 486 (622)
Q Consensus 482 ~v~D~ 486 (622)
.|.|.
T Consensus 83 ~v~d~ 87 (95)
T 1v6e_A 83 HVIDH 87 (95)
T ss_dssp EEBCC
T ss_pred EEEEC
Confidence 99885
No 48
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=52.13 E-value=15 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCcc
Q 006996 347 VATTNAIIAGLIVIEAIKVLLKDTD 371 (622)
Q Consensus 347 IATTnAiVAGl~vlE~~Kvl~~~~~ 371 (622)
++.+.++||+++++|++|+|.+..+
T Consensus 513 l~p~vgvigslqA~Ealk~Llg~~~ 537 (598)
T 3vh1_A 513 TRPGVAMMASSLAVELMTSLLQTKY 537 (598)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 5667889999999999999997643
No 49
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=51.86 E-value=27 Score=28.55 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
++.+.++ ...|+.+|-.. +.++.|+.... .+++|. +..|+ -.++|+++ ++.+|+.|.+
T Consensus 12 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----qrLi~~-Gk~L~----------D~~tL~~~--~i~~g~~l~l 69 (88)
T 4fbj_B 12 EIEIDIE-PTDKVERIKER-VEEKEGIPPQQ----QRLIYS-GKQMN----------DEKTAADY--KILGGSVLHL 69 (88)
T ss_dssp EEEEECC-TTCBHHHHHHH-HHHHHCCCGGG----CEEEET-TEECC----------TTSBTTTT--TCCTTCEEEE
T ss_pred EEEEEEC-CCCCHHHHHHH-HHHHHCcChhH----EEEEEC-CeECC----------CCCcHHHc--CCCCCCEEEE
Confidence 3456676 46799999998 47777865432 244552 11121 15789999 8999986554
No 50
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=49.27 E-value=23 Score=29.18 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=33.7
Q ss_pred EEeccCCCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEec
Q 006996 56 AHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 105 (622)
Q Consensus 56 a~~~~i~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sG 105 (622)
.+..++.+...-.+.+.++|+||+++- ......+-..|...++++++.+
T Consensus 52 ~~~~d~~~~~~~~~~~~~~d~vi~~~~-~~~~~~~~~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 52 TKQVDAKDEAGLAKALGGFDAVISAAP-FFLTPIIAKAAKAAGAHYFDLT 100 (118)
T ss_dssp EEECCTTCHHHHHHHTTTCSEEEECSC-GGGHHHHHHHHHHTTCEEECCC
T ss_pred EEEecCCCHHHHHHHHcCCCEEEECCC-chhhHHHHHHHHHhCCCEEEec
Confidence 344555433222456789999999984 3345667778899999998754
No 51
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=46.90 E-value=26 Score=30.00 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=41.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCC---CccHHHHHHHh--hhhhcccccCCCCCCCCcEEEE
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGD---DLDEVEVANYA--ANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~---~l~~~~~~~~~--~nl~k~L~el~~~i~~g~~l~v 483 (622)
.++++....|+.+|.++ +.++.|+.... .++.|.... ..... ..... .+-.++|+++ |+.+|+.|.+
T Consensus 20 ~v~v~~~~~Tv~~LK~k-I~~~~gip~~~----QrL~~~~~~~~~k~~~~-~~~l~~~l~d~~tL~~~--gi~~G~~L~l 91 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTL-IQDQLQIPIHN----QTLSTNRNLLLAKSPSD-FLAFTDMADPNLRISSL--NLAHGSMVYL 91 (107)
T ss_dssp EEEECCTTSBHHHHHHH-HHHHSCCCTTT----CCCBSSGGGGTCCSHHH-HTTCCSSCCTTCBGGGT--CCCTTCEEEC
T ss_pred EEEECCCCCcHHHHHHH-HHHHhCcCccc----CEEEECCccccccCccc-cccccccCCCCCCHHHC--CCCCCCEEEE
Confidence 56676346899999998 57788865422 122221110 00000 00000 1346889999 9999999998
Q ss_pred eeCC
Q 006996 484 EDLQ 487 (622)
Q Consensus 484 ~D~~ 487 (622)
.+..
T Consensus 92 ~~~~ 95 (107)
T 1wf9_A 92 AYEG 95 (107)
T ss_dssp CCSS
T ss_pred EeCC
Confidence 8774
No 52
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.57 E-value=35 Score=28.70 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ .+.|+.+|-.. +.++.|+.... +.++++.| + +-.++|+++ +|++|+.|.+.
T Consensus 23 ~~~i~v~-~~~TV~~LK~~-I~~~~gip~~~qrL~~~gk~L-------~---------D~~~tL~~y--gI~~g~~l~l~ 82 (102)
T 1v5o_A 23 TFSLQVN-PDFELSNFRVL-CELESGVPAEEAQIVYMEQLL-------T---------DDHCSLGSY--GLKDGDMVVLL 82 (102)
T ss_dssp EEEEEEC-TTCBHHHHHHH-HHHHTCCCGGGBCEEETTEEE-------C---------CSSSBHHHH--TCCTTEEEEEC
T ss_pred EEEEEcC-CCCCHHHHHHH-HHHHHCcChHHeEEEECCEEC-------C---------CCcccHHHC--CCCCCCEEEEE
Confidence 4457777 46899999998 57777865432 33333332 1 113689999 89999876554
No 53
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.95 E-value=32 Score=27.61 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-.. +.++.|+..... +++|. +..|+ -.++|+++ ++.+|+.|.+.
T Consensus 19 ~~~~~v~-~~~tV~~lK~~-i~~~~gi~~~~q----rL~~~-Gk~L~----------d~~tL~~~--~i~~g~~i~l~ 77 (87)
T 1wh3_A 19 SYAYAIN-PNSFILGLKQQ-IEDQQGLPKKQQ----QLEFQ-GQVLQ----------DWLGLGIY--GIQDSDTLILS 77 (87)
T ss_dssp EEEEEEC-SSSBHHHHHHH-HHHHTCCCTTTE----EEEET-TEECC----------SSSBHHHH--TCCTTEEEEEE
T ss_pred EEEEEeC-CCChHHHHHHH-HHHHhCCChHHE----EEEEC-CEEcc----------CCCCHHHC--CCCCCCEEEEE
Confidence 4466777 46899999998 467777654321 23442 11121 14789999 89999876543
No 54
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=45.13 E-value=35 Score=28.42 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-.. +.++.|+.... .+++|.. ..|+ -.++|+++ +|.+|+.|.+.
T Consensus 34 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----qrLi~~G-k~L~----------D~~tL~~~--~i~~g~~i~l~ 92 (98)
T 4hcn_B 34 TITLEVE-SSDTIDNVKSK-IQDKEGIPPDQ----QRLIFAG-KQLE----------DGRTLSDY--NIQKESTLHLV 92 (98)
T ss_dssp EEEEECC-TTCBHHHHHHH-HHHHHCCCGGG----CEEEETT-EECC----------TTCBSGGG--TCCTTEEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHhCCChhH----EEEEECC-EECC----------CCCcHHHC--CCCCCCEEEEE
Confidence 3456666 46899999998 46777865432 2444421 1121 14789999 99999877653
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=44.51 E-value=59 Score=27.73 Aligned_cols=58 Identities=22% Similarity=0.401 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 408 LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 408 ~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
+.++++ ...|+.+|-..| .++.|+..... +++|. +..|+ -.++|+++ |+.+|+.|.+.
T Consensus 48 ~~l~v~-~~~TV~~LK~~I-~~~~gip~~~q----rLi~~-Gk~L~----------D~~tL~~~--gI~~gs~I~l~ 105 (111)
T 2ojr_A 48 ITLEVE-PSDTIENVKAKI-QDKEGIPPDQQ----RLIFA-GKQLE----------DGRTLSDY--NIQKESTLHLV 105 (111)
T ss_dssp EEEEEC-TTCBHHHHHHHH-HHHHCCCTTTE----EEEET-TEECC----------SSCBTTTT--TCCTTCEEEEE
T ss_pred EEEEeC-CCCCHHHHHHHH-HHHHCcCcccE----EEEEC-CEECC----------CCCcHHHc--CCCCCCEEEEE
Confidence 355666 468999999984 67778754321 23342 11121 15789999 99999877653
No 56
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=44.20 E-value=61 Score=28.28 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=42.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCC--ccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDD--LDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~--l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
...+++. ..+|+.+|-.+ +.++.|+..... +++|..... +. +. ..-.++|.+. ||.+|+.|.|.
T Consensus 19 ~~e~~v~-~~~TV~~lK~k-i~~~~Gip~~~q----rL~~~g~~~~~~~-----~l-~~D~~tL~~y--~i~~g~~ihvv 84 (122)
T 1t0y_A 19 PMEKKYP-AGMSLNDLKKK-LELVVGTTVDSM----RIQLFDGDDQLKG-----EL-TDGAKSLKDL--GVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEE-TTSBHHHHHHH-HHHHHCCCTTTE----EEEEECSSSSEEE-----EC-CCCSSBTTTT--TCCSSEEEEEE
T ss_pred cEEEEeC-CCCcHHHHHHH-HHHHhCCCHHHe----EEEEecCCCcccc-----cc-CCCcCCHHHC--CCCCCCEEEEE
Confidence 4566777 46899999998 577888765331 233322000 00 00 0125789999 99999999999
Q ss_pred eCC
Q 006996 485 DLQ 487 (622)
Q Consensus 485 D~~ 487 (622)
|..
T Consensus 85 d~~ 87 (122)
T 1t0y_A 85 DVT 87 (122)
T ss_dssp ECT
T ss_pred eCC
Confidence 854
No 57
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=44.06 E-value=74 Score=24.74 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=37.0
Q ss_pred EEE-EcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 409 SLE-INTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 409 ~l~-i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.++ ++ ...|+.+|-..| .++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+.
T Consensus 17 ~l~~v~-~~~tv~~lK~~i-~~~~gip~~~----qrL~~~-g~~L~----------d~~tL~~~--~i~~g~~i~l~ 74 (78)
T 2faz_A 17 TVDSLS-RLTKVEELRRKI-QELFHVEPGL----QRLFYR-GKQME----------DGHTLFDY--EVRLNDTIQLL 74 (78)
T ss_dssp EEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----EEEEET-TEECC----------TTCBTTTT--TCCTTCEEEEE
T ss_pred EEeccC-CCCCHHHHHHHH-HHHHCcChhh----EEEEEC-CEECC----------CCCCHHHc--CCCCCCEEEEE
Confidence 566 77 467999999984 6777865432 133442 21121 14789999 99999877653
No 58
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=43.78 E-value=45 Score=27.73 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=37.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhh-cccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLE-KVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~-k~L~el~~~i~~g~~l~v 483 (622)
...++++ ...|+.+|-.. +.++.|+.... +.++++.| + -. ++|+++ ||.+|+.|.+
T Consensus 26 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~QrLi~~Gk~L-------~----------D~~~tL~~y--gI~~gstl~l 84 (94)
T 2kan_A 26 QFTVEVD-RTETVSSLKDK-IHIVENTPIKRMQLYYSGIEL-------A----------DDYRNLNEY--GITEFSEIVV 84 (94)
T ss_dssp EEEEEEC-TTCBHHHHHHH-HHHHSSSCTTTEEEEETTEEE-------C----------CTTSBHHHH--TCCTTEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCcCHHHEEEEECCEEC-------C----------CCcccHHHC--CCCCCCEEEE
Confidence 4567777 46899999998 46777775432 33333332 1 13 789999 8999987665
Q ss_pred e
Q 006996 484 E 484 (622)
Q Consensus 484 ~ 484 (622)
.
T Consensus 85 v 85 (94)
T 2kan_A 85 F 85 (94)
T ss_dssp E
T ss_pred E
Confidence 4
No 59
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=42.22 E-value=37 Score=28.90 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.+.++ ...|+.+|-.. +.++.|+.... .+++|. |..|+ + .++|+++ ||++|+.|.+.
T Consensus 13 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----QrLi~~-Gk~L~--------D--~~tL~~~--~i~~g~~i~lv 71 (106)
T 3m62_B 13 KVPLDLE-PSNTILETKTK-LAQSISCEESQ----IKLIYS-GKVLQ--------D--SKTVSEC--GLKDGDQVVFM 71 (106)
T ss_dssp EEEECCC-TTSBHHHHHHH-HHHTTTSCGGG----CEEEET-TEECC--------T--TSBTTTT--TCCTTCEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCCChhh----EEEEEC-CEECC--------C--cCCHHHc--CCCCCCEEEEE
Confidence 3456666 46799999998 46777764322 244553 21121 1 4789999 99999865443
No 60
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.38 E-value=45 Score=28.13 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEE
Q 006996 408 LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTML 481 (622)
Q Consensus 408 ~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l 481 (622)
..++++ ...|+.+|-.+| .++.|+.... .+++|. +..|+ -.++|+++ +|++|+.|
T Consensus 29 ~~l~v~-~~~TV~~LK~~I-~~~~gip~~~----qrLi~~-Gk~L~----------D~~tL~~~--gi~~g~~i 83 (106)
T 1wx7_A 29 EDFSVT-DTCTIQQLKEEI-SQRFKAHPDQ----LVLIFA-GKILK----------DPDSLAQC--GVRDGLTV 83 (106)
T ss_dssp EEEEEE-TTCCHHHHHHHH-HHHHTCCTTT----EEEEET-TEECC----------TTSCHHHH--TCCTTEEE
T ss_pred EEEEEC-CCCcHHHHHHHH-HHHHCcChhh----EEEEEC-CEECC----------CcCcHHHc--CCCCCCEE
Confidence 356666 468999999984 6777765432 233442 11121 14789999 89888654
No 61
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.72 E-value=50 Score=28.29 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=38.7
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
..+.++|+. ..|+.+|-.. +.++.|+.... .+++|.-- -|+ -.++|++. +|++|+.|.|
T Consensus 30 ~~~~lev~~-~~TV~~lK~k-I~~k~gip~~q----QrLI~~GK-iL~----------D~~TL~~y--~I~~gsti~v 88 (100)
T 1wju_A 30 RKNLLETRL-HITGRELRSK-IAETFGLQENY----IKIVINKK-QLQ----------LGKTLEEQ--GVAHNVKAMV 88 (100)
T ss_dssp SSEEEEEES-SSBHHHHHHH-HHHHTTCCSTT----CEEEETTE-ECC----------TTSBHHHH--TCCSSEEEEE
T ss_pred cEEEEEeCC-cCHHHHHHHH-HHHHHCcCHHH----eEEEeCCe-ECC----------CCCcHHHc--CCCCCCEEEE
Confidence 356777774 5799999998 57788875432 23444311 111 14789999 8999987753
No 62
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=40.51 E-value=66 Score=25.44 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAK---LGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~---~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+.+|-..| .++ .|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+
T Consensus 17 ~~~~~v~-~~~TV~~lK~~i-~~~~~~~gip~~~----qrLi~~-Gk~L~----------D~~tL~~~--~i~~g~~i~l 77 (85)
T 2wyq_A 17 TFKIRME-PDETVKVLKEKI-EAEKGRDAFPVAG----QKLIYA-GKILS----------DDVPIRDY--RIDEKNFVVV 77 (85)
T ss_dssp EEEEEEC-TTSBHHHHHHHH-HHHHCTTTCCGGG----EEEEET-TEECC----------TTSBGGGG--CCCTTSEEEE
T ss_pred EEEEEEC-CCCCHHHHHHHH-HhhccccCCCHHH----eEEEEC-CEECc----------CCCCHHHc--CCCCCCEEEE
Confidence 3456777 468999999985 555 3443221 234442 21121 14789999 9999998877
Q ss_pred eeC
Q 006996 484 EDL 486 (622)
Q Consensus 484 ~D~ 486 (622)
...
T Consensus 78 ~~~ 80 (85)
T 2wyq_A 78 MVT 80 (85)
T ss_dssp EEC
T ss_pred EEc
Confidence 653
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=40.14 E-value=64 Score=27.81 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEee
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVED 485 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D 485 (622)
.+.++++ ...|+.+|-.. +.++.|+..... +++|. +..|+ -.++|+++ |+.+|+.|.+..
T Consensus 21 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~q----rLi~~-Gk~L~----------D~~tL~~y--gI~~gstI~l~~ 80 (114)
T 2kdi_A 21 TITLEVE-SSDTIDNVKSK-IQDKEGIPPDQQ----RLIWA-GKQLE----------DGRTLSDY--NIQRESTLHLVL 80 (114)
T ss_dssp EEEEECC-TTCBHHHHHHH-HHHHHCCCGGGE----EEEET-TEECC----------TTCBTTTT--TCCSSCEEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCcChHHE----EEEEC-CEECC----------CCCcHHHC--CCCCCCEEEEEE
Confidence 3456666 46899999998 467778754332 23442 21121 14789999 899998766543
No 64
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=39.91 E-value=93 Score=25.49 Aligned_cols=66 Identities=15% Similarity=0.064 Sum_probs=42.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCC-ccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeCC
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDD-LDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQ 487 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~-l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~~ 487 (622)
.++++ ..+|+++|-.+ +..+.|+.+.. .+++|...+. .-. ....-.++|++. ++.+|+.|-+.|-.
T Consensus 18 E~r~~-~s~TI~~lK~k-i~~~~Gip~~~----QrLi~~~~~~~~~g-----~~l~d~~tL~~Y--~i~~g~~ihlvd~~ 84 (86)
T 4b6w_A 18 EKRYG-LAQTIESIKEN-VFTHFATPPEY----MQLQLIDDRGITIE-----KNMANDKQLGYY--QCRDEFVIHVVDLQ 84 (86)
T ss_dssp EEEEE-TTSBHHHHHHH-HHTTSCCCGGG----EEEEEECTTSCEEE-----SSCCTTSBGGGG--TCCTTCEEEEEECC
T ss_pred EEEcC-ccCcHHHHHHH-HHHHHCCCHHH----EEEEEecCCCCcee-----eEcCCCCCHHHC--CCCCCCEEEEEeCC
Confidence 46666 46899999998 57788876532 2355532110 000 011236899999 99999999988753
No 65
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=39.57 E-value=58 Score=27.88 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.+.++ ...|+.+|-.+| .++.|+.... .+++|.- ..|+ -.++|+++ ++.+|+.|.+.
T Consensus 47 ~~~l~v~-~~~TV~~LK~~I-~~~~gip~~~----QrLi~~G-k~L~----------D~~tL~~~--gI~~gs~I~l~ 105 (111)
T 3vdz_A 47 TITLEVE-PSDTIENVKAKI-QDKEGIPPDQ----QRLIFAG-KQLE----------DGRTLSDY--NIQKESTLHLV 105 (111)
T ss_dssp EEEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----EEEEETT-EECC----------TTSBTTTT--TCCTTCEEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHH-HHHhCCChHH----EEEEECC-EECC----------CCCcHHHC--CCCCCCEEEEE
Confidence 4567777 478999999984 6677875432 2344522 1121 14789999 89999877654
No 66
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.49 E-value=69 Score=26.36 Aligned_cols=60 Identities=17% Similarity=0.371 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhc---CCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKL---GINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~---~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+.+|-..| .+++ |+.... .+++|. |..|+ + +++|+++ ||.+|+.|.+
T Consensus 12 ~~~~~v~-~~~TV~~LK~~I-~~~~~~~gip~~~----qrLi~~-Gk~L~--------D--~~tL~~y--gI~~g~~i~l 72 (95)
T 1uel_A 12 TFKIDID-PEETVKALKEKI-ESEKGKDAFPVAG----QKLIYA-GKILN--------D--DTALKEY--KIDEKNFVVV 72 (95)
T ss_dssp EEEEECC-TTSBHHHHHHHH-HHHHCTTTCCTTT----EEEEET-TEECC--------T--TSBGGGG--TCCSSSEEEE
T ss_pred EEEEEEC-CCCHHHHHHHHH-HhhcccCCCChhh----EEEEEC-CEECC--------C--cCcHHHC--CCCCCCEEEE
Confidence 3456666 468999999985 5553 443221 123442 21121 1 4789999 9999987765
Q ss_pred ee
Q 006996 484 ED 485 (622)
Q Consensus 484 ~D 485 (622)
..
T Consensus 73 ~~ 74 (95)
T 1uel_A 73 MV 74 (95)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 67
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.15 E-value=44 Score=27.50 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-+. +.++.|+.... .+++|. +..|+ -.++|+++ ++.+|+.|.+.
T Consensus 28 ~~~~~v~-~~~TV~~LK~~-I~~~~gip~~~----qrL~~~-Gk~L~----------D~~tL~~~--gi~~g~~i~l~ 86 (96)
T 1wx8_A 28 CHEFFLA-ENSNVRRFKKQ-ISKYLHCNADR----LVLIFT-GKILR----------DQDILSQR--GILDGSTVHVV 86 (96)
T ss_dssp EEEEEEE-TTCCHHHHHHH-HHHHTCSCTTT----BCCEET-TEECC----------TTSCHHHH--TCCTTEEEECC
T ss_pred EEEEEEC-CCCCHHHHHHH-HHHHhCCCHHH----EEEEEC-CEECC----------CcCCHHHC--CCCCCCEEEEE
Confidence 4456776 46899999998 46777765432 233442 11121 14789999 89999877654
No 68
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=37.71 E-value=70 Score=26.39 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=39.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCc-----ceeecCc-EEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFP-----LIMHGSN-LLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTM 480 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~-----~I~~g~~-~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~ 480 (622)
.+-+++. ..+|+++|++. +.+.|+++.+ .|-+-++ ++... ..+|++. |+++|+.
T Consensus 18 ~~DLRIP-~~~tvK~Li~~-l~ea~~l~~~~~~~~~irv~NK~~~L~~----------------~~~L~d~--~ItnGD~ 77 (81)
T 2bps_A 18 VFDLRLS-DYHPVKKVIDI-AWQAQSVSMPPREGHWIRVVNKDKVFSG----------------ECKLSDC--GITNGDR 77 (81)
T ss_dssp EEEEEEE-TTSBTTHHHHH-HHHHSCCCSCCCTTCEEEEGGGTEEEET----------------TSBTGGG--TCCTTCE
T ss_pred eEEEECC-CchhHHHHHHH-HHHHhCCCcCCCCCCEEEEecCCEEEcC----------------CCEEeeC--CcCCCCE
Confidence 4456776 47999999996 6788888764 3333332 33322 3568888 7999999
Q ss_pred EEE
Q 006996 481 LTV 483 (622)
Q Consensus 481 l~v 483 (622)
|.|
T Consensus 78 Lei 80 (81)
T 2bps_A 78 LEI 80 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 976
No 69
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=37.20 E-value=33 Score=27.89 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeC
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDL 486 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~ 486 (622)
.+.++++ ...|+.+|-.. +.++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+...
T Consensus 16 ~~~~~v~-~~~TV~~LK~~-I~~~~gip~~~----qrL~~~-Gk~L~----------D~~tL~~~--~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 16 SSTYEVR-LTQTVAHLKQQ-VSGLEGVQDDL----FWLTFE-GKPLE----------DQLPLGEY--GLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEE-SSSBHHHHHHH-HHHHTCSCTTT----EEEESS-SSCCC----------TTSBHHHH--HCSTTCEEEEEEC
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHhCCChhH----EEEEEC-CEECC----------CCCcHHHc--CCCCCCEEEEEEE
Confidence 3456777 46799999998 46777765432 133442 22232 14789999 8999998877644
No 70
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=37.10 E-value=61 Score=27.19 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 408 LSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 408 ~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
..++++ ...|+.+|-..| .++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+.
T Consensus 34 ~~l~v~-~~~TV~~LK~~I-~~~~gip~~~----QrLi~~-Gk~L~----------D~~tL~~y--gI~~gstI~l~ 91 (100)
T 1yqb_A 34 EDFSVT-DTCTIQQLKEEI-SQRFKAHPDQ----LVLIFA-GKILK----------DPDSLAQC--GVRDGLTVHLV 91 (100)
T ss_dssp EEEEEE-TTCBHHHHHHHH-HHHHTCCGGG----EEEEET-TEECC----------TTSBHHHH--TCCTTCEEEEE
T ss_pred EEEEEC-CCCcHHHHHHHH-HHHHCcChhh----EEEEEC-CEECC----------CcCcHHHC--CCCCCCEEEEE
Confidence 356777 468999999984 6777765422 234442 21121 14789999 89999877654
No 71
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=36.95 E-value=57 Score=26.89 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-.. +.++.|+.... .+++|. +..|+ -.++|+++ ++.+|+.|.+.
T Consensus 29 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----qrLi~~-Gk~L~----------D~~tL~~y--~I~~gstI~lv 87 (93)
T 2l7r_A 29 LHTFEVT-GQETVAQIKAH-VASLEGIAPED----QVVLLA-GAPLE----------DEATLGQC--GVEALTTLEVA 87 (93)
T ss_dssp EEEEECC-SSCBHHHHHHH-HHHHHTCCGGG----CEEEET-TEECC----------TTSBHHHH--TCCSSCEEEEE
T ss_pred EEEEEeC-CCCcHHHHHHH-HHHHhCcChhH----EEEEEC-CEECC----------CCCcHHHC--CCCCCCEEEEE
Confidence 4466776 46899999998 46777765322 234443 21121 14789999 89999887654
No 72
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=36.68 E-value=31 Score=34.79 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEec
Q 006996 36 SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGL 81 (622)
Q Consensus 36 ~KaevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~al 81 (622)
.|++.+++.+....|.+++.++. + ... .+.+.++|+||||+
T Consensus 162 ~~a~~la~~~~~~~~~~~i~~~~--~--~~l-~~~l~~~DiVInaT 202 (283)
T 3jyo_A 162 SRAQALADVINNAVGREAVVGVD--A--RGI-EDVIAAADGVVNAT 202 (283)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEC--S--TTH-HHHHHHSSEEEECS
T ss_pred HHHHHHHHHHHhhcCCceEEEcC--H--HHH-HHHHhcCCEEEECC
Confidence 68888888888887887777653 1 112 35677899999995
No 73
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=35.60 E-value=71 Score=25.70 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+.+|-..| .++.|+.... .+++|. +..|+ -.++|+++ ++ +|+.|.+
T Consensus 17 ~~~~~v~-~~~tV~~lK~~i-~~~~gip~~~----qrLi~~-Gk~L~----------d~~tL~~~--~i-~g~~i~l 73 (90)
T 4dwf_A 17 TRTFIVG-AQMNVKEFKEHI-AASVSIPSEK----QRLIYQ-GRVLQ----------DDKKLQEY--NV-GGKVIHL 73 (90)
T ss_dssp EEEEEEE-TTCBHHHHHHHH-HHHHTCCGGG----EEEEET-TEECC----------TTSBGGGG--TC-TTEEEEE
T ss_pred EEEEEEC-CCCCHHHHHHHH-HHHhCCCHHH----EEEEEC-CeECC----------CCCCHHHc--CC-CCcEEEE
Confidence 4567777 467999999984 6777875432 144552 21121 15789999 88 7764433
No 74
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.88 E-value=62 Score=27.32 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=39.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeC
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDL 486 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~ 486 (622)
.+.++++ ...|+.+|-.. +.++.|+.... .+++|. |..|+ -.++|+++ |+.+|+.|.+...
T Consensus 35 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----qrLi~~-Gk~L~----------D~~tL~~y--gI~~g~ti~lv~~ 95 (106)
T 1ttn_A 35 DLKLVVR-STDTVFHMKRR-LHAAEGVEPGS----QRWFFS-GRPLT----------DKMKFEEL--KIPKDYVVQVIVS 95 (106)
T ss_dssp EEEEEEC-TTSHHHHHHHH-HHHTTCCCSTT----CEEEET-TEECC----------TTSHHHHC--CCSSSCEEEEECC
T ss_pred EEEEEeC-CCCcHHHHHHH-HHHHHCcCccc----EEEEEC-CEECC----------CCCcHHHc--CCCCCCEEEEEEe
Confidence 3456676 46799999998 46777764322 234442 21121 14789999 9999988877654
No 75
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=34.52 E-value=52 Score=26.71 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCC-ccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDD-LDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~-l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
...++++ ...|+.+|-.. +.++.|+.... .+++|. |.. |+ -.++|+++ |+.+|+.|.+
T Consensus 22 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~----QrLi~~-Gk~lL~----------D~~tL~~y--~I~~gs~i~l 80 (84)
T 2kk8_A 22 SFELEVD-YRDTLLVVKQK-IERSQHIPVSK----QTLIVD-GIVILR----------EDLTVEQC--QIVPTSDIQL 80 (84)
T ss_dssp EEEEEEC-TTSBHHHHHHH-HHHHHTCCGGG----EEEEET-TEECCC----------SSSBHHHH--TCCTTSCEEE
T ss_pred EEEEEEC-CCChHHHHHHH-HHHHHCcChHH----EEEEEC-CEEecC----------CcCCHHHc--CCCCCCEEEE
Confidence 3467777 46799999998 57777865422 234442 211 11 14789999 8999987765
No 76
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=34.35 E-value=1.1e+02 Score=27.29 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEE-EeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEee
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLL-YEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVED 485 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~L-Y~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D 485 (622)
.+.++++ ...|+.+|-.. +.++.|+.... .+++ |..+..|+ -.++|++. ++.+|+.|.+.-
T Consensus 14 ~~~l~v~-~~~tV~~lK~~-I~~~~gip~~~----QrL~~~~~g~~L~----------d~~tL~~y--~i~~~~~l~l~~ 75 (159)
T 3rt3_B 14 EFQVSLS-SSMSVSELKAQ-ITQKIGVHAFQ----QRLAVHPSGVALQ----------DRVPLASQ--GLGPGSTVLLVV 75 (159)
T ss_dssp EEEEECC-TTCCHHHHHHH-HHHHHCCCGGG----EEEEEETTCCBCC----------TTSCGGGG--TCCTTCEEEEEE
T ss_pred EEEEEeC-CCCcHHHHHHH-HHHHhCCCHHH----EEEEEcCCCCCCC----------CCCCHHHc--CCCCCCEEEEEc
Confidence 3456676 46799999998 57777865422 2344 53332232 25789999 999999988876
Q ss_pred CCCCeEEEEEEEe
Q 006996 486 LQQELTCNINIKH 498 (622)
Q Consensus 486 ~~~~~~~~l~i~~ 498 (622)
....-.+.|.|+.
T Consensus 76 ~~~~~~m~i~vk~ 88 (159)
T 3rt3_B 76 DKSDEPLSILVRN 88 (159)
T ss_dssp CCCCCCEEEEEEC
T ss_pred cCCCCcEEEEEEC
Confidence 5323345555654
No 77
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=34.25 E-value=47 Score=26.05 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++. ..|+++|.+.+ .++.|+.... .+++|. +..|+ -.++|+++ ++.+|+.|.+.
T Consensus 15 ~~~~~v~~-~~tv~~lk~~i-~~~~gi~~~~----qrL~~~-G~~L~----------d~~tl~~~--~i~~~~~i~l~ 73 (79)
T 2uyz_B 15 EIHFKVKM-TTHLKKLKESY-CQRQGVPMNS----LRFLFE-GQRIA----------DNHTPKEL--GMEEEDVIEVY 73 (79)
T ss_dssp EEEEEEET-TSCTHHHHHHH-HHHHTCCGGG----EEEEET-TEECC----------TTCCHHHH--TCCTTEEEEEE
T ss_pred EEEEEECC-CChHHHHHHHH-HHHHCCCccc----EEEEEC-CEEeC----------CCCCHHHc--CCCCCCEEEEE
Confidence 45677774 67999999984 6677765432 234553 22222 24789999 99999887653
No 78
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=33.43 E-value=1.7e+02 Score=25.39 Aligned_cols=63 Identities=19% Similarity=0.343 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeC
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDL 486 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~ 486 (622)
.+.++++ ...|+.+|-.. +.++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+...
T Consensus 12 ~~~~~v~-~~~tv~~lK~~-i~~~~gip~~~----q~L~~~-g~~L~----------d~~tL~~~--~i~~~~~l~l~~~ 72 (152)
T 3b08_A 12 TITLEVE-PSDTIENVKAK-IQDKEGIPPDQ----QRLIFA-GKQLE----------DGRTLSDY--NIQKESTLHLVLR 72 (152)
T ss_dssp EEEEECC-TTCBHHHHHHH-HHHHHCCCGGG----EEEEET-TEECC----------TTSBTGGG--TCCTTCEEEEEEC
T ss_pred EEEEEEC-CCCCHHHHHHH-HHHHHCcChHH----eEEEEC-CeECc----------CcccHHHh--ccCCCCeeEEEee
Confidence 3456666 46799999998 47777875432 123442 11121 14789999 9999999988876
Q ss_pred CC
Q 006996 487 QQ 488 (622)
Q Consensus 487 ~~ 488 (622)
..
T Consensus 73 ~~ 74 (152)
T 3b08_A 73 LR 74 (152)
T ss_dssp CT
T ss_pred cc
Confidence 43
No 79
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.84 E-value=73 Score=25.54 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=36.5
Q ss_pred cEEE-EEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSL-EINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l-~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.+ .++. ..|+.+|-.. +.++.|+.... .+++|. +..|+ -.++|+++ ++.+|+.|.+
T Consensus 20 ~~~l~~v~~-~~tV~~lK~~-i~~~~gip~~~----qrL~~~-gk~L~----------d~~tL~~~--~i~~g~~i~l 78 (89)
T 1wy8_A 20 TCTIEDVSR-KATIEELRER-VWALFDVRPEC----QRLFYR-GKQLE----------NGYTLFDY--DVGLNDIIQL 78 (89)
T ss_dssp EEEEEEECT-TCBHHHHHHH-HHHHSCCCTTT----EEEEET-TEECC----------SSSBHHHH--TCCTTCEEEE
T ss_pred eEEEEecCC-CCCHHHHHHH-HHHHHCcChhh----EEEEEC-CeECC----------CCCCHHHC--CCCCCCEEEE
Confidence 4567 3774 6899999998 46777765432 134442 11121 14789999 8999876654
No 80
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=32.39 E-value=71 Score=25.80 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=39.3
Q ss_pred EcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEee-CCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeCC
Q 006996 412 INTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEV-GDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDLQ 487 (622)
Q Consensus 412 i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~-~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~~ 487 (622)
++ .+.|+.+|...| .++.|+... ..+++|.. +-.++ -.+-.++|+++ |+.+|+.|.|.+..
T Consensus 17 l~-~~~Tv~~Lk~~I-~~~~gi~~~----~qrL~~~~p~k~l~-------l~~~~~tL~~~--gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LS-SRTRLRELQGQI-AAITGIAPG----SQRILVGYPPECLD-------LSDRDITLGDL--PIQSGDMLIVEEDQ 78 (86)
T ss_dssp CC-TTCBHHHHHHHH-HHHTCCCTT----TCCCEESSCCCCCC-------CCCSSCBTTTS--SCCTTCEEECCCCS
T ss_pred cC-CCCCHHHHHHHH-HHHhCCCcc----ceEEEeCCCCcccc-------cCCCCCCHHHc--CCCCCCEEEEEeCC
Confidence 44 467999999984 677776421 12345532 11111 01246899999 99999999998764
No 81
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=31.66 E-value=1e+02 Score=26.00 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=36.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCC-CCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPV-TNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i-~~g~~l~v~ 484 (622)
++.++++ ...|+.+|-++|..++.|+.... .+++|. |..|+ -.++|+++ ++ ++|+.|.+.
T Consensus 33 ~i~v~v~-~~~TV~~lK~~I~~~~~gip~~~----QrLi~~-Gk~L~----------D~~tL~dy--~I~~~g~ti~lm 93 (98)
T 4a20_A 33 SIEHDFS-PSDTILQIKQHLISEEKASHISE----IKLLLK-GKVLH----------DNLFLSDL--KVTPANSTITVM 93 (98)
T ss_dssp EEEEEEC-TTCBHHHHHHHHHHTTSCSCGGG----EEEEET-TEEEC----------TTCBGGGS--CCBTTBCEEEEE
T ss_pred EEEEecC-CCChHHHHHHHHHHHhcCCChhh----EEEEEC-CEECc----------CcCCHHHc--CcCCCCCEEEEE
Confidence 3455665 46799999998536655654321 234442 11121 14789999 89 999877653
No 82
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=31.65 E-value=37 Score=28.67 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=38.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEee
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVED 485 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D 485 (622)
.++++ ...|+.+|-.. +.++.|+.... .+++|.. ..|+ -.++|+++ |+++|+.|.+..
T Consensus 41 ~l~v~-~~~TV~~LK~~-I~~~~gip~~~----QrLi~~G-k~L~----------D~~tL~~~--gI~~g~tI~lv~ 98 (101)
T 3m63_B 41 EVNVA-PESTVLQFKEA-INKANGIPVAN----QRLIYSG-KILK----------DDQTVESY--HIQDGHSVHLVK 98 (101)
T ss_dssp CBCCC-TTSBHHHHHHH-HHHHHSCCSTT----CCEEETT-EECC----------TTSBTTTT--TCCTTEEEEECC
T ss_pred EEEeC-CCCCHHHHHHH-HHHHHCcChHH----EEEEECC-EECC----------CcCcHHHC--CCCCCCEEEEEe
Confidence 34455 46799999998 46677765432 2455532 1121 15789999 999999888764
No 83
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=30.53 E-value=55 Score=33.70 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=34.8
Q ss_pred eccCCCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEec
Q 006996 58 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 105 (622)
Q Consensus 58 ~~~i~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sG 105 (622)
..++.+...-.++++++|+||+|+-.. ....|-+.|.++++.+++..
T Consensus 62 ~~d~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 62 KVDASNFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp ECCTTCHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHHHTCEEEECC
T ss_pred EEecCCHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHhcCcceEeee
Confidence 334443333356789999999999765 35678899999999999964
No 84
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.52 E-value=63 Score=26.48 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhh-cccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLE-KVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~-k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+.+|-.+| .++. . ...+++|. +..|+ -. ++|+++ ||.+|+.|.+
T Consensus 19 ~~~~~v~-~~~TV~~LK~~i-~~~~-~------~~qrLi~~-Gk~L~----------D~~~tL~~y--~i~~g~~i~l 74 (95)
T 1wia_A 19 EELAVAR-PEDTVGTLKSKY-FPGQ-E------SQMKLIYQ-GRLLQ----------DPARTLSSL--NITNNCVIHC 74 (95)
T ss_dssp EEEEEEC-SSSBHHHHHHHH-SSST-T------TTCEEEET-TEECC----------CSSCBTTTT--TCCTTEEEEE
T ss_pred EEEEEEC-CCCcHHHHHHHH-HhhC-c------CcEEEEEC-CEEcc----------CCcCCHHHc--CCCCCCEEEE
Confidence 3456776 467999998875 3332 1 12344553 21121 13 789999 8998875443
No 85
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=30.24 E-value=1e+02 Score=24.58 Aligned_cols=57 Identities=23% Similarity=0.453 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
...+.++ ...|+.+|-..| .++.|+.... .+++|. +..|+ + .++|+++ |+ +|+.|.+
T Consensus 29 ~~~~~v~-~~~tV~~lK~~i-~~~~gip~~~----qrLi~~-Gk~L~--------D--~~tL~~~--~i-~g~~i~l 85 (88)
T 4eew_A 29 TRTFIVG-AQMNVKEFKEHI-AASVSIPSEK----QRLIYQ-GRVLQ--------D--DKKLQEY--NV-GGKVIHL 85 (88)
T ss_dssp EEEEEEE-TTCBHHHHHHHH-HHHHTCCGGG----EEEEET-TEECC--------T--TSBGGGG--TC-TTEEEEE
T ss_pred EEEEEEC-CCCCHHHHHHHH-HHHhCCCHHH----EEEEEC-CEECC--------C--CCcHHHc--CC-CCcEEEE
Confidence 4466777 467999999984 6777875432 144552 21121 1 5789999 89 7887754
No 86
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=29.52 E-value=91 Score=26.44 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++.-..|+.+|-.. +.++.|+.... .+++|. +..++ -.++|+++ +|.+|+.|.+.
T Consensus 42 ~~~l~v~~l~~TV~~LK~~-I~~~~gip~~~----QrL~~~-Gk~L~----------D~~tL~~y--~I~~g~~l~l~ 101 (111)
T 1we6_A 42 FMEITVQSLSENVGSLKEK-IAGEIQIPANK----QKLSGK-AGFLK----------DNMSLAHY--NVGAGEILTLS 101 (111)
T ss_dssp CEEEEESCSSSBHHHHHHH-HHHHTTCCTTT----SEEECS-SSBCC----------TTSBTTTT--TCSSSCEEEEE
T ss_pred EEEEEecCCCCcHHHHHHH-HHHHHCCCHHH----eEEEEC-CEECC----------CCCcHHHC--CCCCCCEEEEE
Confidence 4567777316899999998 46777765422 234442 21121 15789999 89999876553
No 87
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=29.50 E-value=76 Score=26.72 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=30.2
Q ss_pred ccCCEEEEecCCH-HHHHHHHHHHHHcCCCEEEecccc
Q 006996 72 KQFNVVLNGLDNL-DARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 72 ~~~DlVi~alDn~-~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
.+.-+||-|-|-. ..+.++..+|..+++|++..++.-
T Consensus 33 gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~ 70 (101)
T 3on1_A 33 GQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQ 70 (101)
T ss_dssp TCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHH
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHH
Confidence 3577899998864 478899999999999999887653
No 88
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=29.28 E-value=51 Score=28.60 Aligned_cols=65 Identities=11% Similarity=0.037 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006996 38 AKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 107 (622)
Q Consensus 38 aevAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~ 107 (622)
++.+.+..++++-.++|+.....=-+..+..+-+..+|+||-+.|-.- ....+..|+|++..++.
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v-----~~~~RF~gk~v~~~~v~ 86 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKV-----RNKERFDGKVVLEVPVS 86 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCC-----STHHHHTTSEEEEECTT
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccc-----cchhccCCCcEEEEcHH
Confidence 344555556677677777765422233455678899999999999431 12333459999988764
No 89
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=28.76 E-value=65 Score=26.75 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=38.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++|.. ..|+++|...| .++.|+.... .+++|. |..|+ -.++|+++ ++.+|+.|.+.
T Consensus 33 ~~~l~v~~-~~tv~~lK~~i-~~~~gip~~~----qrLif~-Gk~L~----------d~~tl~dy--~i~~g~~I~l~ 91 (97)
T 1wyw_B 33 EIHFKVKM-TTHLKKLKESY-CQRQGVPMNS----LRFLFE-GQRIA----------DNHTPKEL--GMEEEDVIEVY 91 (97)
T ss_dssp EEEEEEET-TSCTHHHHHHH-HHHHTCCGGG----EEEEET-TEECC----------TTCCHHHH--TCCTTCEEEEE
T ss_pred EEEEEECC-CCcHHHHHHHH-HHHHCCChhh----EEEEEC-CeEcC----------CCCCHHHC--CCCCCCEEEEE
Confidence 45677774 67999999984 6777865432 234553 22222 24789999 99999887653
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=28.17 E-value=83 Score=24.62 Aligned_cols=58 Identities=14% Similarity=0.322 Sum_probs=39.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.+.+. ...+|+.|.+.+ .++.|+.... .+++|+ |..+ +-..|..+| ++.+|..|.|
T Consensus 13 ~v~~~v~-~~t~l~kl~~~y-~~~~gi~~~~----~rf~fd-G~~l----------~~~~Tp~~l--~medgD~Idv 70 (72)
T 1wm3_A 13 VVQFKIK-RHTPLSKLMKAY-CERQGLSMRQ----IRFRFD-GQPI----------NETDTPAQL--EMEDEDTIDV 70 (72)
T ss_dssp EEEEEEC-TTSCTHHHHHHH-HHHHTCCTTT----CEEEET-TEEC----------CTTCCTTTT--TCCTTEEEEE
T ss_pred EEEEEEC-CCChHHHHHHHH-HHHhCCCcce----EEEEEC-CEEc----------CCCCCHHHc--CCCCCCEEEE
Confidence 5677777 467999999985 5677875432 245554 3222 235788899 9999998866
No 91
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=28.02 E-value=99 Score=30.09 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=30.2
Q ss_pred CchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEE
Q 006996 65 KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLV 102 (622)
Q Consensus 65 ~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI 102 (622)
.|..+.+.++|+||.|+|+.+.-..|-..|. .++|+-
T Consensus 83 ~~~~~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~VN 119 (223)
T 3dfz_A 83 KVGEEDLLNVFFIVVATNDQAVNKFVKQHIK-NDQLVN 119 (223)
T ss_dssp CCCGGGSSSCSEEEECCCCTHHHHHHHHHSC-TTCEEE
T ss_pred CCCHhHhCCCCEEEECCCCHHHHHHHHHHHh-CCCEEE
Confidence 3455678899999999999988888888887 788854
No 92
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=27.95 E-value=1.2e+02 Score=29.97 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=40.0
Q ss_pred hCCCCeEEEEeccCCCCCchhhhhc-cCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecccccc
Q 006996 48 FRPQMSITAHHANVKDPKFNVEFFK-QFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 110 (622)
Q Consensus 48 ~NP~v~I~a~~~~i~~~~~~~~f~~-~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~ 110 (622)
..|+.++.+....-. .+ .+++. .+|+||+++ ++.+-...-..|.++++|+|-+ |+|+.
T Consensus 22 ~~~~~elva~~d~~~--dl-~~~~~~~~DvvIDfT-~p~a~~~~~~~a~~~g~~~Vig-TTG~~ 80 (245)
T 1p9l_A 22 AADDLTLSAELDAGD--PL-SLLTDGNTEVVIDFT-HPDVVMGNLEFLIDNGIHAVVG-TTGFT 80 (245)
T ss_dssp HCTTCEEEEEECTTC--CT-HHHHHTTCCEEEECS-CTTTHHHHHHHHHHTTCEEEEC-CCCCC
T ss_pred hCCCCEEEEEEccCC--CH-HHHhccCCcEEEEcc-ChHHHHHHHHHHHHcCCCEEEc-CCCCC
Confidence 357888887655422 22 23443 899999999 5556666677899999998765 55654
No 93
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=27.22 E-value=1.2e+02 Score=26.01 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.++++ ...|+.+|-.. +.++.|+.... +.++++.| + -.++|+++ ++.+|+.|.+
T Consensus 47 ~~~l~v~-~~~TV~~LK~~-I~~~~gip~~~QrL~~~Gk~L-------~----------D~~tL~~y--~i~~g~~i~l 104 (115)
T 1we7_A 47 GLVFTLP-LTDQVSVIKVK-IHEATGMPAGKQKLQYEGIFI-------K----------DSNSLAYY--NMASGAVIHL 104 (115)
T ss_dssp EEEEEEC-SCSBTHHHHHH-HHHHSSCCTTTEEEEETTEEE-------C----------TTSBHHHH--TCCSSCEEEE
T ss_pred EEEEEEC-CCCCHHHHHHH-HHHHHCCChHHEEEEECCEEC-------C----------CCCCHHHC--CCCCCCEEEE
Confidence 4567777 46899999998 46777765422 33333332 1 14789999 8998876544
No 94
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=25.37 E-value=1.2e+02 Score=27.03 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=38.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
..+.++++. ..|+.+|-..| .++.|+.... .+++|. +..|+ -.++|++. ++++|+.|.+.
T Consensus 92 ~~~~~~v~~-~~tV~~lK~~i-~~~~gip~~~----q~L~~~-G~~L~----------d~~tL~~y--~i~~g~~l~l~ 151 (159)
T 3rt3_B 92 RSSTYEVRL-TQTVAHLKQQV-SGLEGVQDDL----FWLTFE-GKPLE----------DQLPLGEY--GLKPLSTVFMN 151 (159)
T ss_dssp CEEEEEECT-TSBHHHHHHHH-HHHHTCCGGG----EEEEET-TEECC----------TTSBGGGG--TCCTTCEEEEE
T ss_pred CEEEEEeCC-CCCHHHHHHHH-HHHHCCCHHH----EEEEEC-CeecC----------CCCCHHHc--CCCCCCEEEEE
Confidence 345677774 67999999984 6777875432 123332 11121 15789999 99999877654
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=25.30 E-value=92 Score=24.97 Aligned_cols=58 Identities=16% Similarity=0.378 Sum_probs=39.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.+.+.|.. ..+|+.|.+.+ .++.|+.... .+++|+ |..+ +-..|..+| ++.+|..|.|
T Consensus 20 ~i~~~i~~-~t~l~kl~~~y-~~~~gi~~~~----~rf~fd-G~~l----------~~~~Tp~~l--~medgD~Idv 77 (79)
T 3a4r_A 20 MLEISLSP-DSPLKVLMSHY-EEAMGLSGHK----LSFFFD-GTKL----------SGKELPADL--GLESGDLIEV 77 (79)
T ss_dssp EEEEEECT-TSCHHHHHHHH-HHHHTCTTCC----CEEEET-TEEC----------CSCCCHHHH--TCCTTCEEEE
T ss_pred EEEEEECC-CChHHHHHHHH-HHHhCCCccc----EEEEEC-CEEc----------CCCCCHHHc--CCCCCCEEEE
Confidence 56777774 67999999985 6677876432 345553 2221 235788899 9999998876
No 96
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=25.26 E-value=1.1e+02 Score=25.74 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=29.7
Q ss_pred cCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEecccc
Q 006996 73 QFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 73 ~~DlVi~alDn-~~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
+.-+||-|-|- ...+..+-.+|..+++|++..++.-
T Consensus 35 ka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~ 71 (101)
T 3v7q_A 35 RAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRA 71 (101)
T ss_dssp CCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHH
T ss_pred ceeEEEEeccccccchhhhcccccccCCCeeeechHH
Confidence 56789999885 4578889999999999999987653
No 97
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=25.04 E-value=1e+02 Score=25.58 Aligned_cols=59 Identities=15% Similarity=0.327 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.+.|.. ..+|+.|.+.+ .++.|+....+ +++|+ |..+ +-..|..+| ++.+|..|.|.
T Consensus 29 ~i~~~v~~-~t~l~kl~~~y-~~~~gi~~~~~----rf~fd-G~~l----------~~~~Tp~dl--~medgD~Idv~ 87 (93)
T 2d07_B 29 VVQFKIKR-HTPLSKLMKAY-CERQGLSMRQI----RFRFD-GQPI----------NETDTPAQL--EMEDEDTIDVF 87 (93)
T ss_dssp EEEEEEET-TSCHHHHHHHH-HHHHTCCGGGE----EEEET-TEEC----------CTTCCTTTT--TCCTTEEEEEE
T ss_pred EEEEEEcc-CCHHHHHHHHH-HHHhCCCccce----EEEEC-CEEc----------CCCCCHHHc--CCCCCCEEEEE
Confidence 45677774 57999999985 67778765432 35554 2222 235788999 99999988764
No 98
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.84 E-value=77 Score=26.24 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-.+ +.++.|+.... |.+.++.| + +.+|+++ +|++|+.|.+.
T Consensus 28 ~~~i~v~-~~~TV~~LK~~-I~~~tgip~~~QrL~~~Gk~L-d-----------------d~tL~~~--~i~~g~~i~lv 85 (95)
T 1v86_A 28 KHDVKVP-LDSTGSELKQK-IHSITGLPPAMQKVMYKGLVP-E-----------------DKTLREI--KVTSGAKIMVV 85 (95)
T ss_dssp EEEEEEC-TTSBHHHHHHH-HHHHHCSCSTTCCCBSSSBCC-S-----------------SSBHHHH--CCCTTEEEEEC
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCcCHHHeEEEECCeeC-C-----------------cCcHHHC--CCCCCCEEEEE
Confidence 3456666 46899999998 57777865432 33333332 1 2378899 89999888775
Q ss_pred eC
Q 006996 485 DL 486 (622)
Q Consensus 485 D~ 486 (622)
+.
T Consensus 86 ~~ 87 (95)
T 1v86_A 86 GS 87 (95)
T ss_dssp CS
T ss_pred ec
Confidence 43
No 99
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=24.71 E-value=1.8e+02 Score=25.02 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=36.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcc--eeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCC-CCCcEEE
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPL--IMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPV-TNGTMLT 482 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~--I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i-~~g~~l~ 482 (622)
.+++.+. ...|+.+|-+. +.+++|+.... +.+|+++ - .-.++|.+. || .+|+.+.
T Consensus 38 ~i~l~V~-ps~TV~~LK~~-I~~k~Gipp~~QRli~ggkl-l----------------~D~~TL~~y--gI~~~G~t~h 95 (105)
T 4dbg_A 38 TIWLTVR-PDMTVASLKDM-VFLDYGFPPVLQQWVIGQRL-A----------------RDQETLHSH--GVRQNGDSAY 95 (105)
T ss_dssp EEEEEEC-TTCBHHHHHHH-HHHHHCCCGGGEEEEETTEE-E----------------CTTCBTGGG--TCCSTTCEEE
T ss_pred eEEEEEC-CcChHHHHHHH-HHHHhCCCHHHEEEeccCeE-c----------------cCcCcHHHc--CCCCCCCEEE
Confidence 4566666 46899999998 47788986532 3333332 1 115789998 99 4887654
No 100
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=24.68 E-value=1.7e+02 Score=26.62 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEeeC
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVEDL 486 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~D~ 486 (622)
.+.++++ ...|+.+|-.+ +.++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+.-.
T Consensus 32 ~~~l~v~-~~~tV~~lK~~-I~~~~gip~~~----QrL~~~-g~~L~----------d~~tL~~~--~i~~~~~l~l~~~ 92 (172)
T 3u30_A 32 TITLEVE-PSDTIENVKAK-IQDKEGIPPDQ----QRLIFA-GKQLE----------DGRTLSDY--NIQKESTLHLVLR 92 (172)
T ss_dssp EEEEEEC-TTCBHHHHHHH-HHHHHCCCGGG----EEEEET-TEECC----------TTCBTGGG--TCCTTCEEEEEEC
T ss_pred EEEEEEC-CCCcHHHHHHH-HHHHHCcChHH----EEEEEC-Ccccc----------ccCCHhHc--CCcccceeeeeec
Confidence 4567777 46899999998 47777875432 133342 11121 15789999 9999998888754
Q ss_pred C
Q 006996 487 Q 487 (622)
Q Consensus 487 ~ 487 (622)
.
T Consensus 93 ~ 93 (172)
T 3u30_A 93 L 93 (172)
T ss_dssp C
T ss_pred c
Confidence 3
No 101
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.30 E-value=1.1e+02 Score=26.20 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=38.4
Q ss_pred ccEEEEEcCCCCCHHHHHHHHHHHhcCCCCc--ceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 406 TPLSLEINTSRSKLRDFVEKIVKAKLGINFP--LIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 406 ~~~~l~i~~~~~TL~~li~~ilk~~~~~~~~--~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
..+.++|+. ..|+++|-+. +.++.|+... .+.++++.| + + .++|++. +|.+|+.|.+
T Consensus 39 k~i~lev~p-~dTV~~lK~~-Ia~k~Gip~~qQrLi~~Gk~L-------~--------D--~~TL~dy--gI~~gstlhL 97 (100)
T 1uh6_A 39 KKVRVKCNT-DDTIGDLKKL-IAAQTGTRWNKIVLKKWYTIF-------K--------D--HVSLGDY--EIHDGMNLEL 97 (100)
T ss_dssp SCEEEEEET-TSBHHHHHHH-HHHHHCCCGGGCEEEETTEEC-------C--------S--SCBHHHH--TCCTTEEEEE
T ss_pred CEEEEEeCC-CCcHHHHHHH-HHHHhCCCHHHEEEEECCEEC-------C--------C--CCCHHHc--CCCCCCEEEE
Confidence 456678885 5699999998 4777787543 234444443 1 1 4778888 8999987654
No 102
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=24.27 E-value=79 Score=23.25 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.0
Q ss_pred cCchHHHHHHHHHHhhCCCCeEEEEec
Q 006996 33 VGQSKAKVARDAVLKFRPQMSITAHHA 59 (622)
Q Consensus 33 IGk~KaevAa~~l~~~NP~v~I~a~~~ 59 (622)
||.+ ++.|+..|++-||+++|..+..
T Consensus 14 VG~~-~~~A~~~I~~e~P~v~v~vl~~ 39 (45)
T 1hym_A 14 VGVG-GSVAKAIIERQNPNVKAVILEE 39 (45)
T ss_dssp TTSC-HHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCCc-HHHHHHHHHHHCCCCeEEEecC
Confidence 6766 7889999999999999988754
No 103
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=24.26 E-value=1.3e+02 Score=25.02 Aligned_cols=59 Identities=15% Similarity=0.327 Sum_probs=40.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.+.|. ...+|+.|.+.+ .++.|+....+ +++|+ |..+ +-..|..+| ++.+|..|.|-
T Consensus 17 ~v~~~vk-~~t~l~kl~~~y-~~~~gi~~~~~----rf~Fd-G~~l----------~~~~Tp~dl--~medgD~Idv~ 75 (91)
T 2io0_B 17 VVQFKIK-RHTPLSKLMKAY-CERQGLSMRQI----RFRFD-GQPI----------NETDTPAQL--EMEDEDTIDVF 75 (91)
T ss_dssp EEEEEEE-TTSCTHHHHHHH-HHHTTCCSTTE----EEEET-TEEC----------CTTCCTTTT--TCCTTEEEEEE
T ss_pred EEEEEEC-CCChHHHHHHHH-HHHhCCCcccE----EEEEC-CEEc----------CCCCCHHHc--CCCCCCEEEEE
Confidence 5677777 467999999985 66778765332 34553 3222 235788899 99999988765
No 104
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.63 E-value=93 Score=25.97 Aligned_cols=59 Identities=15% Similarity=0.327 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++|.. ..||+.|.+.+ .++.|+....+ +++|+ |..+ +-.+|+.+| ++.+|+.|.|.
T Consensus 19 ~i~~~v~~-~t~l~kl~~~y-~~~~gi~~~~~----rf~Fd-G~~l----------~~~~Tp~dl--~medgD~Idv~ 77 (94)
T 2io1_B 19 VVQFKIKR-HTPLSKLMKAY-CERQGLSMRQI----RFRFD-GQPI----------NETDTPAQL--EMEDEDTIDVF 77 (94)
T ss_dssp EEEEEEET-TSCTHHHHHHH-HHHHTCCGGGE----EEEET-TEEC----------CTTCCTTTT--TCCTTCEEEEE
T ss_pred EEEEEECC-CCHHHHHHHHH-HHHhCCCcccE----EEEEC-CEEc----------CCCCCHHHc--CCCCCCEEEEE
Confidence 46677774 67999999985 67778765332 45554 2222 235789999 89999887664
No 105
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.56 E-value=1.4e+02 Score=26.00 Aligned_cols=59 Identities=22% Similarity=0.407 Sum_probs=38.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
...+.++ ...|+.+|-..| .++.|+.... .+++|. +..|+ -.++|+++ |+.+|+.|.+.
T Consensus 88 ~~~~~v~-~~~tv~~lK~~i-~~~~gi~~~~----qrL~~~-g~~L~----------d~~tL~~~--~i~~~~~i~l~ 146 (152)
T 3b08_A 88 TITLEVE-PSDTIENVKAKI-QDKEGIPPDQ----QRLIFA-GKQLE----------DGRTLSDY--NIQKESTLHLV 146 (152)
T ss_dssp EEEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----EEEEET-TEECC----------TTSBTGGG--TCCTTCEEEEE
T ss_pred EEEEEeC-CCCcHHHHHHHH-HHHhCcChhh----EEEEEC-CEECC----------CCCCHHHc--CCCCCCEEEEE
Confidence 4566777 467999999985 6677765432 223442 11121 15789999 99999887654
No 106
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=22.66 E-value=86 Score=31.29 Aligned_cols=40 Identities=20% Similarity=0.247 Sum_probs=31.1
Q ss_pred hhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEecccccc
Q 006996 69 EFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 110 (622)
Q Consensus 69 ~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~G~~ 110 (622)
+++.++|+||+++ ++.+-..+-..|.++++|+|-+ |.|+.
T Consensus 68 ~~l~~~DvVIDft-~p~~~~~~~~~a~~~G~~vVig-TtG~~ 107 (273)
T 1dih_A 68 AVKDDFDVFIDFT-RPEGTLNHLAFCRQHGKGMVIG-TTGFD 107 (273)
T ss_dssp TTTTSCSEEEECS-CHHHHHHHHHHHHHTTCEEEEC-CCCCC
T ss_pred HHhcCCCEEEEcC-ChHHHHHHHHHHHhCCCCEEEE-CCCCC
Confidence 5567899999888 6777778888999999997654 44653
No 107
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=22.55 E-value=46 Score=29.20 Aligned_cols=64 Identities=6% Similarity=0.040 Sum_probs=40.1
Q ss_pred HHHHHHHHhhCCCCeEEEEeccCCCCCchhhhhccCCEEEEecCCHHHHHHHHHHHHHcCCCEEEeccc
Q 006996 39 KVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 107 (622)
Q Consensus 39 evAa~~l~~~NP~v~I~a~~~~i~~~~~~~~f~~~~DlVi~alDn~~aR~~vn~~c~~~~iPlI~sGt~ 107 (622)
+.+.+..++++-.++|+..-..=-+..+..+-+...|+||-+.|.. +....+..|+|++.+++.
T Consensus 26 eaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~-----v~~~~RF~GK~v~~~~v~ 89 (111)
T 2kyr_A 26 QALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVT-----PEDNERFESRDVYEITLQ 89 (111)
T ss_dssp HHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSC-----CTTGGGGTTSCEEEEETT
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCCC-----cCchhhcCCCeEEEeCHH
Confidence 3344444456556666664432223345567889999999998853 222344579999988764
No 108
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=27.40 E-value=19 Score=28.09 Aligned_cols=56 Identities=11% Similarity=0.324 Sum_probs=34.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEE
Q 006996 409 SLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTV 483 (622)
Q Consensus 409 ~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v 483 (622)
.++++ .+.|+.+|-..| .++.|+.... .+++|. +..|+ + +++|+++ |+.+|+.|.+
T Consensus 14 ~~~v~-~~~tV~~lK~~i-~~~~gi~~~~----qrL~~~-gk~L~--------d--~~tL~~~--~i~~g~~i~l 69 (76)
T 3b1l_X 14 PVEVD-SDTSILQLKEVV-AKQQGVPADQ----LRVIFA-GKELP--------N--HLTVQNC--DLEQQSIVHI 69 (76)
Confidence 45555 367999998884 6666654321 234443 21121 1 4789999 8999987654
No 109
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.15 E-value=1.6e+02 Score=25.16 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=40.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.+.|. ...+|+.|.+.+ .++.|+.... .+++|+ |..+ +-..|..+| ++.+|.+|.|.
T Consensus 36 ~i~~kVk-~~t~l~kL~~~y-~ek~gi~~~~----~rf~Fd-G~~l----------~~~~Tp~dl--~medgD~Idv~ 94 (104)
T 1wz0_A 36 VVQFKIK-RHTPLSKLMKAY-CERQGLSMRQ----IRFRFD-GQPI----------NETDTPAQL--EMEDEDTIDVF 94 (104)
T ss_dssp EEEEEEC-TTSCHHHHHHHH-HHHHTCCTTT----SCEESS-SSBC----------CTTSCTTTT--TCCTTEEEEEC
T ss_pred EEEEEEc-CCChHHHHHHHH-HHHhCCCcce----EEEEEC-CEEc----------CCCCCHHHc--CCCCCCEEEEE
Confidence 4567776 467999999985 6777876432 345554 3322 235788999 99999988764
No 110
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=21.00 E-value=2e+02 Score=26.45 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
.+.++++ ...|+.+|-.+| .++.|+.... .+++|.. ..|+ -.++|+++ |+++|+.|.+.
T Consensus 12 ~~~l~v~-~~~TV~~LK~~I-~~~~gip~~~----QrLi~~G-k~L~----------D~~tL~~y--~I~~gstI~Lv 70 (169)
T 3l0w_B 12 TITLEVE-SSDTIDNVKSKI-QDKEGIPPDQ----QRLIFAG-KQLE----------DGRTLSDY--NIQKESTLHLV 70 (169)
T ss_dssp EEEEECC-TTCBHHHHHHHH-HHHHCCCTTT----EEEEETT-EECC----------TTSBGGGG--TCCTTCEEEEE
T ss_pred EEEEEeC-CCCCHHHHHHHH-HHHHCcCHHH----EEEEECC-cccc----------CcCcHHHc--CCCCCCEEEEE
Confidence 4456776 467999999984 6777865432 1344421 1121 14789999 89999865554
No 111
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=20.73 E-value=1.2e+02 Score=24.55 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=29.1
Q ss_pred cCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEecccc
Q 006996 73 QFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTG 108 (622)
Q Consensus 73 ~~DlVi~alDn-~~aR~~vn~~c~~~~iPlI~sGt~G 108 (622)
+.-+||-|-|- +..+.++-.+|..+++|++...+.-
T Consensus 27 kaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~ 63 (82)
T 3v7e_A 27 SVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMK 63 (82)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHH
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 56788888875 4577889999999999999877543
No 112
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=20.17 E-value=1.6e+02 Score=27.87 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHHHhcCCCCcceeecCcEEEeeCCCccHHHHHHHhhhhhcccccCCCCCCCCcEEEEe
Q 006996 407 PLSLEINTSRSKLRDFVEKIVKAKLGINFPLIMHGSNLLYEVGDDLDEVEVANYAANLEKVLSQLPSPVTNGTMLTVE 484 (622)
Q Consensus 407 ~~~l~i~~~~~TL~~li~~ilk~~~~~~~~~I~~g~~~LY~~~~~l~~~~~~~~~~nl~k~L~el~~~i~~g~~l~v~ 484 (622)
++.++++ ...|+.+|-..| .++.|+.... .+++|... .|+ + .++|+++ +|++|+.|.+.
T Consensus 117 t~~l~V~-~s~TV~~LK~kI-~~~~gIp~~~----QrLi~~Gk-~L~--------D--~~tL~dy--gI~~gstI~Lv 175 (189)
T 3q3f_A 117 TITLEVE-PSDTIENVKAKI-QDKEGIPPDQ----QRLIFAGK-QLE--------D--GRTLSDY--NIQKESTLHLV 175 (189)
T ss_dssp EEEEEEC-TTCBHHHHHHHH-HHHHCCCGGG----CCEEETTE-ECC--------T--TCBGGGG--TCCTTCEEEEC
T ss_pred EEEEEeC-CCCcHHHHHHHH-HhccCCCHHH----EEEEECCE-ECC--------C--CCCHHHC--CCCCCCEEEEE
Confidence 4566777 468999999984 6677765422 23444221 121 1 5789999 89999877654
Done!