BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006997
         (622 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OC3|A Chain A, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
 pdb|3OC3|B Chain B, Crystal Structure Of The Mot1 N-Terminal Domain In Complex
           With Tbp
          Length = 800

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 145 FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDE-IGETSIVSWTTII 203
           F   +  H   +K+G L N +   +  + +Y K  ++ +   +FD+ + E +I    T+I
Sbjct: 650 FNTRLLAHSFFHKIGSLENRLDFFSKTIHIYTKTSQIQKIGFVFDDALREKNI----TVI 705

Query: 204 GGYVNVGNVNEAF 216
            G++     NE F
Sbjct: 706 NGFMRSLEFNEKF 718


>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
           Mycobacterium Abscessus
          Length = 415

 Score = 30.8 bits (68), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 107 AHSRACLNDEAILVLKEMWVLGL-----ELSASTFVSVVSGCSFRQGISMHCCVYKLGLL 161
           A +R  +N   +LVL   W+L        LSA + + V +    +Q I M   ++  G L
Sbjct: 315 ADARIAINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGL 374

Query: 162 NNEIPLA 168
           +N+ PLA
Sbjct: 375 SNDFPLA 381


>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
           Thermotoga Maritima At 2.00 A Resolution
 pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
           Thermotoga Maritima At 2.00 A Resolution
 pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
           Thermotoga Maritima At 2.00 A Resolution
 pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
           Thermotoga Maritima At 2.00 A Resolution
          Length = 380

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 478 DLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537
           +LL R G + +A   + + PV  +   W  L +A  K   V    +  K +      ++ 
Sbjct: 286 ELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSI----TSR 341

Query: 538 NYILMANLFTSAGMWKEAATARGLMDDRRLTK 569
           NY L++ L T     KEA  A  LM+ R   K
Sbjct: 342 NYQLLSKLITHRLPLKEANKALELMESREALK 373


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,414,649
Number of Sequences: 62578
Number of extensions: 670194
Number of successful extensions: 1476
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 4
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)