Query 006997
Match_columns 622
No_of_seqs 654 out of 3662
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 17:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.3E-96 5E-101 791.6 70.8 616 1-622 158-777 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.8E-81 3.8E-86 660.1 64.1 526 95-622 84-614 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.7E-80 8E-85 665.9 60.7 562 1-571 57-625 (857)
4 PLN03081 pentatricopeptide (PP 100.0 5.2E-67 1.1E-71 550.5 51.7 460 2-468 94-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 2.2E-65 4.7E-70 539.2 62.1 509 26-572 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 5E-64 1.1E-68 528.9 53.0 493 2-534 377-914 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-34 2.7E-39 321.3 60.0 549 4-567 304-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-34 4.5E-39 319.5 61.5 544 5-565 271-832 (899)
9 PRK11447 cellulose synthase su 100.0 4.6E-26 1E-30 252.2 58.7 543 4-564 121-739 (1157)
10 PRK11447 cellulose synthase su 100.0 2.4E-26 5.1E-31 254.5 56.2 550 3-567 70-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.1E-22 2.4E-27 214.8 58.0 538 6-566 55-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 4.1E-24 8.9E-29 200.0 35.5 379 164-554 115-508 (966)
13 PRK09782 bacteriophage N4 rece 99.9 8.8E-22 1.9E-26 208.0 55.5 540 2-566 85-741 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 4.5E-23 9.7E-28 193.1 32.4 361 197-569 117-489 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-20 4.8E-25 194.5 40.8 417 101-565 130-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 3.7E-19 7.9E-24 176.0 41.8 541 11-565 146-745 (1018)
17 PRK11788 tetratricopeptide rep 99.9 3.5E-20 7.5E-25 183.6 29.6 266 299-572 71-354 (389)
18 KOG2002 TPR-containing nuclear 99.9 4.7E-18 1E-22 168.3 43.5 508 45-565 145-709 (1018)
19 PRK15174 Vi polysaccharide exp 99.9 1.2E-18 2.6E-23 180.7 41.3 367 176-564 16-402 (656)
20 PRK10049 pgaA outer membrane p 99.9 2.4E-18 5.2E-23 182.5 42.9 394 164-566 14-457 (765)
21 PRK10049 pgaA outer membrane p 99.9 1E-17 2.2E-22 177.7 46.6 367 167-540 51-465 (765)
22 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-18 5.4E-23 179.2 40.9 419 68-536 130-576 (615)
23 PRK15174 Vi polysaccharide exp 99.9 1.5E-18 3.3E-23 179.9 38.7 352 207-568 16-384 (656)
24 PRK11788 tetratricopeptide rep 99.9 3.5E-19 7.6E-24 176.5 30.8 283 207-497 46-345 (389)
25 PRK14574 hmsH outer membrane p 99.8 2.3E-16 4.9E-21 163.9 45.9 437 40-539 44-521 (822)
26 PRK14574 hmsH outer membrane p 99.8 7E-16 1.5E-20 160.3 46.0 195 373-567 298-515 (822)
27 KOG4422 Uncharacterized conser 99.8 1.6E-15 3.5E-20 136.8 40.6 432 7-496 127-587 (625)
28 KOG0495 HAT repeat protein [RN 99.8 1E-13 2.2E-18 132.0 50.4 443 116-575 364-854 (913)
29 KOG2076 RNA polymerase III tra 99.8 2.5E-14 5.5E-19 141.4 44.7 557 8-566 152-850 (895)
30 KOG2003 TPR repeat-containing 99.8 3E-16 6.4E-21 142.5 27.6 483 4-552 210-710 (840)
31 KOG2003 TPR repeat-containing 99.8 2E-15 4.4E-20 137.1 29.2 257 305-566 427-690 (840)
32 KOG0495 HAT repeat protein [RN 99.8 1.7E-12 3.7E-17 123.8 48.8 368 197-577 517-890 (913)
33 KOG4422 Uncharacterized conser 99.7 8.6E-14 1.9E-18 125.8 36.3 320 97-462 115-461 (625)
34 KOG2076 RNA polymerase III tra 99.7 2E-14 4.3E-19 142.1 34.6 333 238-575 146-522 (895)
35 KOG1915 Cell cycle control pro 99.7 3.8E-13 8.3E-18 123.3 39.3 459 63-564 71-584 (677)
36 PF13429 TPR_15: Tetratricopep 99.7 1.5E-17 3.4E-22 155.6 11.3 257 303-564 14-276 (280)
37 KOG1915 Cell cycle control pro 99.7 8.8E-13 1.9E-17 121.0 40.1 481 42-565 85-625 (677)
38 KOG4318 Bicoid mRNA stability 99.7 3.1E-13 6.8E-18 133.1 37.6 534 16-569 11-598 (1088)
39 KOG1155 Anaphase-promoting com 99.7 1.1E-12 2.3E-17 120.2 35.0 256 303-564 233-494 (559)
40 KOG1155 Anaphase-promoting com 99.7 1.1E-12 2.4E-17 120.1 33.1 249 305-564 270-535 (559)
41 KOG0547 Translocase of outer m 99.7 4.2E-13 9.1E-18 123.6 29.0 186 373-564 366-565 (606)
42 PRK10747 putative protoheme IX 99.6 2.8E-13 6E-18 132.7 29.7 275 279-564 97-389 (398)
43 KOG1126 DNA-binding cell divis 99.6 6.7E-14 1.5E-18 134.2 21.9 276 281-567 334-622 (638)
44 KOG1126 DNA-binding cell divis 99.6 6E-14 1.3E-18 134.5 21.2 245 312-564 334-585 (638)
45 KOG1173 Anaphase-promoting com 99.6 2E-12 4.4E-17 121.5 29.2 497 32-545 18-532 (611)
46 PRK10747 putative protoheme IX 99.6 1.4E-12 3E-17 127.8 29.8 284 209-532 97-391 (398)
47 KOG1173 Anaphase-promoting com 99.6 1.1E-11 2.3E-16 116.8 33.0 261 296-564 243-517 (611)
48 TIGR00540 hemY_coli hemY prote 99.6 2.4E-12 5.3E-17 126.9 29.9 285 243-563 96-397 (409)
49 TIGR00540 hemY_coli hemY prote 99.6 8.1E-12 1.8E-16 123.2 33.1 288 206-530 94-398 (409)
50 PF13429 TPR_15: Tetratricopep 99.5 2.2E-14 4.8E-19 134.3 9.8 252 35-324 13-275 (280)
51 KOG3785 Uncharacterized conser 99.5 1.6E-10 3.5E-15 102.5 31.7 268 37-323 29-311 (557)
52 KOG4162 Predicted calmodulin-b 99.5 1.6E-10 3.4E-15 113.1 34.1 125 437-564 653-782 (799)
53 KOG2047 mRNA splicing factor [ 99.5 2.3E-09 4.9E-14 102.8 40.4 509 30-564 102-686 (835)
54 COG2956 Predicted N-acetylgluc 99.5 6.1E-11 1.3E-15 103.9 26.8 216 209-426 48-277 (389)
55 KOG0547 Translocase of outer m 99.5 9.9E-11 2.1E-15 108.3 27.7 187 269-461 363-564 (606)
56 COG3071 HemY Uncharacterized e 99.5 5.6E-10 1.2E-14 101.2 31.9 119 209-328 97-218 (400)
57 COG3071 HemY Uncharacterized e 99.5 1.5E-10 3.2E-15 104.8 27.8 253 303-564 124-389 (400)
58 KOG3785 Uncharacterized conser 99.5 2E-09 4.2E-14 95.7 33.5 464 72-572 29-521 (557)
59 COG2956 Predicted N-acetylgluc 99.4 1.5E-10 3.2E-15 101.6 25.2 293 245-571 49-353 (389)
60 KOG1174 Anaphase-promoting com 99.4 1.7E-09 3.8E-14 98.1 32.4 369 164-539 96-508 (564)
61 KOG2376 Signal recognition par 99.4 1.4E-09 3.1E-14 103.3 33.2 438 72-562 19-517 (652)
62 TIGR02521 type_IV_pilW type IV 99.4 3E-11 6.5E-16 110.6 22.0 195 367-564 31-231 (234)
63 KOG4318 Bicoid mRNA stability 99.4 2.7E-09 5.9E-14 106.0 32.6 482 51-564 11-556 (1088)
64 KOG1129 TPR repeat-containing 99.4 2.7E-11 5.8E-16 106.1 16.7 228 301-567 227-460 (478)
65 COG3063 PilF Tfp pilus assembl 99.4 5E-11 1.1E-15 99.6 17.1 162 400-567 37-204 (250)
66 KOG2047 mRNA splicing factor [ 99.4 1.3E-07 2.9E-12 91.1 41.5 441 65-564 102-614 (835)
67 KOG1174 Anaphase-promoting com 99.4 1.6E-08 3.5E-13 91.9 32.7 281 295-610 230-519 (564)
68 KOG1840 Kinesin light chain [C 99.4 2E-10 4.3E-15 111.9 22.3 232 333-564 200-478 (508)
69 PRK12370 invasion protein regu 99.3 3.5E-10 7.6E-15 116.0 25.1 244 312-566 276-536 (553)
70 PRK11189 lipoprotein NlpI; Pro 99.3 2.6E-10 5.6E-15 106.9 19.3 189 368-566 65-266 (296)
71 PRK12370 invasion protein regu 99.3 3.4E-10 7.3E-15 116.2 21.5 210 346-564 275-501 (553)
72 TIGR02521 type_IV_pilW type IV 99.3 1.3E-09 2.8E-14 99.7 22.9 198 297-531 31-232 (234)
73 KOG1129 TPR repeat-containing 99.3 1.3E-10 2.8E-15 102.0 14.5 236 265-537 222-464 (478)
74 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 80.3 6.1 50 194-243 1-50 (50)
75 PF12569 NARP1: NMDA receptor- 99.3 1.7E-07 3.8E-12 92.9 37.8 410 106-561 12-516 (517)
76 PRK11189 lipoprotein NlpI; Pro 99.3 2.8E-09 6.1E-14 99.9 24.0 232 311-551 40-286 (296)
77 KOG1156 N-terminal acetyltrans 99.3 3.3E-07 7.2E-12 88.6 37.8 470 33-564 11-510 (700)
78 KOG4162 Predicted calmodulin-b 99.2 9.1E-08 2E-12 94.3 33.6 436 53-537 311-789 (799)
79 KOG0548 Molecular co-chaperone 99.2 6.8E-09 1.5E-13 97.9 24.2 373 173-566 10-456 (539)
80 PF13041 PPR_2: PPR repeat fam 99.2 5.2E-11 1.1E-15 77.4 6.7 50 295-344 1-50 (50)
81 KOG1156 N-terminal acetyltrans 99.2 4.4E-07 9.5E-12 87.8 35.5 385 174-567 50-470 (700)
82 KOG3616 Selective LIM binding 99.2 1E-07 2.2E-12 93.1 31.5 220 305-561 714-933 (1636)
83 KOG0548 Molecular co-chaperone 99.2 2.6E-08 5.5E-13 94.1 25.5 248 300-560 227-484 (539)
84 KOG1840 Kinesin light chain [C 99.2 4.2E-09 9.1E-14 102.8 21.1 192 339-530 248-478 (508)
85 KOG2376 Signal recognition par 99.2 1.2E-06 2.5E-11 84.1 36.3 118 3-129 20-141 (652)
86 KOG0985 Vesicle coat protein c 99.2 6.2E-07 1.4E-11 90.8 36.0 373 36-457 844-1243(1666)
87 KOG0624 dsRNA-activated protei 99.2 8.1E-08 1.8E-12 85.3 26.1 189 341-536 164-375 (504)
88 COG3063 PilF Tfp pilus assembl 99.2 1.2E-08 2.7E-13 85.6 19.9 194 339-537 42-242 (250)
89 KOG1125 TPR repeat-containing 99.1 2.6E-09 5.7E-14 101.5 17.3 248 342-610 295-556 (579)
90 KOG0985 Vesicle coat protein c 99.1 3.4E-06 7.3E-11 85.7 39.4 522 3-563 614-1247(1666)
91 KOG3616 Selective LIM binding 99.1 1.7E-06 3.7E-11 84.9 35.0 78 34-121 561-638 (1636)
92 KOG1127 TPR repeat-containing 99.1 7E-07 1.5E-11 90.6 31.7 179 11-224 474-658 (1238)
93 PF04733 Coatomer_E: Coatomer 99.1 1.3E-08 2.9E-13 93.7 18.3 250 275-536 10-270 (290)
94 KOG0624 dsRNA-activated protei 99.1 1.3E-06 2.8E-11 77.9 29.4 307 164-497 37-368 (504)
95 PF12569 NARP1: NMDA receptor- 99.0 3.8E-07 8.2E-12 90.5 26.9 286 172-463 11-334 (517)
96 KOG4340 Uncharacterized conser 99.0 5.7E-07 1.2E-11 78.5 24.5 383 169-566 14-444 (459)
97 PF04733 Coatomer_E: Coatomer 99.0 1.8E-08 3.9E-13 92.9 16.5 245 305-565 9-265 (290)
98 KOG4340 Uncharacterized conser 99.0 1.5E-06 3.2E-11 76.0 26.5 293 26-355 6-333 (459)
99 KOG3617 WD40 and TPR repeat-co 99.0 1.8E-05 4E-10 78.9 37.0 50 517-567 1306-1361(1416)
100 cd05804 StaR_like StaR_like; a 99.0 1.5E-06 3.3E-11 85.0 29.6 257 306-565 52-336 (355)
101 PRK15363 pathogenicity island 99.0 6.1E-08 1.3E-12 77.8 15.4 120 469-611 34-155 (157)
102 KOG3617 WD40 and TPR repeat-co 99.0 3.8E-06 8.2E-11 83.6 30.7 355 64-460 725-1171(1416)
103 KOG1127 TPR repeat-containing 98.9 4.3E-06 9.3E-11 85.1 30.6 538 10-563 507-1102(1238)
104 PRK10370 formate-dependent nit 98.9 8.7E-08 1.9E-12 83.4 16.9 148 405-567 23-175 (198)
105 TIGR03302 OM_YfiO outer membra 98.9 7.6E-08 1.7E-12 87.7 17.3 180 366-566 32-233 (235)
106 KOG1914 mRNA cleavage and poly 98.9 6.4E-05 1.4E-09 71.7 36.4 149 313-463 347-501 (656)
107 PRK15359 type III secretion sy 98.9 2.6E-08 5.6E-13 81.9 12.6 108 455-567 14-123 (144)
108 PRK15359 type III secretion sy 98.9 2.6E-08 5.6E-13 81.9 12.3 123 418-548 13-138 (144)
109 KOG1125 TPR repeat-containing 98.9 9.6E-08 2.1E-12 91.2 17.4 248 306-558 294-564 (579)
110 KOG1070 rRNA processing protei 98.9 1.5E-07 3.2E-12 98.5 20.0 199 364-567 1455-1665(1710)
111 PRK04841 transcriptional regul 98.9 4E-06 8.7E-11 93.1 32.0 324 242-565 385-760 (903)
112 cd05804 StaR_like StaR_like; a 98.8 2.2E-05 4.8E-10 76.8 32.2 192 338-532 120-337 (355)
113 PRK04841 transcriptional regul 98.8 2.5E-05 5.4E-10 86.9 33.8 361 173-534 349-763 (903)
114 PLN02789 farnesyltranstransfer 98.7 5E-06 1.1E-10 77.9 22.4 144 415-563 125-300 (320)
115 PRK15179 Vi polysaccharide bio 98.7 1E-06 2.3E-11 91.0 19.2 136 397-538 85-224 (694)
116 COG5010 TadD Flp pilus assembl 98.7 1.9E-06 4.2E-11 74.4 16.1 122 440-563 72-195 (257)
117 KOG1128 Uncharacterized conser 98.7 1.3E-06 2.7E-11 86.0 16.7 189 362-566 393-583 (777)
118 TIGR02552 LcrH_SycD type III s 98.6 4E-07 8.8E-12 74.7 11.5 108 456-566 5-115 (135)
119 PRK10370 formate-dependent nit 98.6 3.1E-06 6.8E-11 73.7 17.5 153 374-540 23-182 (198)
120 COG5010 TadD Flp pilus assembl 98.6 2E-06 4.4E-11 74.3 15.7 157 402-562 70-228 (257)
121 KOG1128 Uncharacterized conser 98.6 2.5E-06 5.4E-11 84.0 17.1 217 329-565 395-616 (777)
122 KOG1070 rRNA processing protei 98.6 1.3E-05 2.9E-10 84.6 22.6 227 331-562 1457-1697(1710)
123 PRK14720 transcript cleavage f 98.6 3.1E-05 6.6E-10 81.1 25.3 112 334-461 118-250 (906)
124 TIGR03302 OM_YfiO outer membra 98.6 3.6E-06 7.8E-11 76.7 16.3 181 330-533 31-234 (235)
125 PLN02789 farnesyltranstransfer 98.5 1E-05 2.2E-10 75.8 18.8 184 377-566 47-251 (320)
126 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.3E-06 4.9E-11 81.7 13.9 123 436-563 171-295 (395)
127 KOG3081 Vesicle coat complex C 98.5 0.00013 2.8E-09 63.3 23.0 249 276-536 18-276 (299)
128 KOG2053 Mitochondrial inherita 98.5 0.0023 4.9E-08 65.4 40.4 521 6-563 20-606 (932)
129 COG4783 Putative Zn-dependent 98.5 3E-05 6.6E-10 73.2 20.0 137 407-566 315-455 (484)
130 KOG3060 Uncharacterized conser 98.5 4.7E-05 1E-09 65.5 19.3 130 408-541 96-230 (289)
131 COG4783 Putative Zn-dependent 98.5 0.00019 4.1E-09 68.0 24.6 122 440-564 312-436 (484)
132 PF12854 PPR_1: PPR repeat 98.4 3.7E-07 8E-12 53.0 4.1 32 261-292 2-33 (34)
133 PF12854 PPR_1: PPR repeat 98.4 4.4E-07 9.6E-12 52.6 4.3 32 465-496 2-33 (34)
134 PRK15179 Vi polysaccharide bio 98.4 3.9E-05 8.5E-10 79.6 21.5 143 362-509 81-229 (694)
135 PRK14720 transcript cleavage f 98.4 0.00011 2.4E-09 77.2 24.5 243 153-445 19-268 (906)
136 KOG0553 TPR repeat-containing 98.4 2.9E-06 6.3E-11 74.9 10.4 109 442-553 89-200 (304)
137 PF09976 TPR_21: Tetratricopep 98.4 1.4E-05 2.9E-10 66.2 13.9 115 447-562 24-144 (145)
138 TIGR02552 LcrH_SycD type III s 98.4 1.2E-05 2.5E-10 66.0 13.1 115 420-539 5-122 (135)
139 PRK15331 chaperone protein Sic 98.3 1.1E-05 2.4E-10 65.3 12.0 100 465-564 31-133 (165)
140 KOG1914 mRNA cleavage and poly 98.3 0.0037 8E-08 60.2 37.3 210 349-562 310-536 (656)
141 PF13414 TPR_11: TPR repeat; P 98.3 1.3E-06 2.9E-11 61.6 5.5 65 501-565 2-67 (69)
142 KOG3060 Uncharacterized conser 98.3 8.7E-05 1.9E-09 63.9 16.4 161 401-567 55-222 (289)
143 cd00189 TPR Tetratricopeptide 98.3 7.6E-06 1.7E-10 62.4 9.5 93 473-565 3-97 (100)
144 PF12895 Apc3: Anaphase-promot 98.3 6.7E-07 1.4E-11 65.9 3.2 78 483-561 2-83 (84)
145 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.1E-05 2.3E-10 64.5 10.5 96 472-567 4-107 (119)
146 PF13432 TPR_16: Tetratricopep 98.3 2.5E-06 5.5E-11 59.2 5.8 60 508-567 3-62 (65)
147 KOG3081 Vesicle coat complex C 98.2 0.00025 5.5E-09 61.6 18.2 243 304-563 15-269 (299)
148 PF09976 TPR_21: Tetratricopep 98.2 7.9E-05 1.7E-09 61.6 15.2 124 401-529 15-145 (145)
149 PLN03088 SGT1, suppressor of 98.2 2.2E-05 4.9E-10 75.5 13.2 101 442-545 10-113 (356)
150 TIGR00756 PPR pentatricopeptid 98.2 3.3E-06 7.1E-11 50.0 4.3 35 99-133 1-35 (35)
151 PF13812 PPR_3: Pentatricopept 98.1 4.5E-06 9.7E-11 49.0 4.2 34 98-131 1-34 (34)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.1E-05 1.8E-09 71.3 14.6 123 369-497 171-295 (395)
153 KOG0550 Molecular chaperone (D 98.1 0.00027 5.9E-09 65.3 16.7 154 406-565 177-350 (486)
154 COG4235 Cytochrome c biogenesi 98.1 9E-05 1.9E-09 66.2 13.1 105 467-571 153-262 (287)
155 COG4700 Uncharacterized protei 98.1 0.00035 7.7E-09 57.1 15.1 152 409-565 67-222 (251)
156 TIGR00756 PPR pentatricopeptid 98.1 7.1E-06 1.5E-10 48.5 4.4 34 197-230 1-34 (35)
157 PRK02603 photosystem I assembl 98.0 4.9E-05 1.1E-09 65.1 10.7 82 470-551 35-121 (172)
158 TIGR02795 tol_pal_ybgF tol-pal 98.0 9.5E-05 2.1E-09 59.0 11.7 105 436-540 4-114 (119)
159 KOG0553 TPR repeat-containing 98.0 1.8E-05 3.9E-10 70.0 7.8 90 477-566 88-179 (304)
160 KOG2053 Mitochondrial inherita 98.0 0.024 5.2E-07 58.4 38.8 64 504-567 438-504 (932)
161 PF14559 TPR_19: Tetratricopep 98.0 8.3E-06 1.8E-10 57.3 4.7 54 513-566 2-55 (68)
162 PRK10153 DNA-binding transcrip 98.0 0.00026 5.5E-09 71.3 16.9 62 503-565 421-482 (517)
163 PLN03088 SGT1, suppressor of 98.0 6.8E-05 1.5E-09 72.2 12.3 100 404-509 8-110 (356)
164 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 47.1 4.2 33 197-229 2-34 (34)
165 PF13371 TPR_9: Tetratricopept 98.0 2.1E-05 4.5E-10 56.2 6.3 59 509-567 2-60 (73)
166 CHL00033 ycf3 photosystem I as 98.0 5.3E-05 1.2E-09 64.6 9.7 94 470-563 35-140 (168)
167 PRK02603 photosystem I assembl 97.9 0.00033 7.2E-09 60.0 13.4 128 399-551 36-166 (172)
168 PF13432 TPR_16: Tetratricopep 97.9 2.4E-05 5.2E-10 54.3 5.2 61 476-536 3-65 (65)
169 KOG2280 Vacuolar assembly/sort 97.9 0.04 8.6E-07 55.7 30.8 129 418-562 668-796 (829)
170 COG3898 Uncharacterized membra 97.9 0.023 5.1E-07 52.6 28.3 271 279-565 97-392 (531)
171 PF13431 TPR_17: Tetratricopep 97.8 9.9E-06 2.1E-10 46.9 1.9 34 524-557 1-34 (34)
172 COG4700 Uncharacterized protei 97.8 0.00051 1.1E-08 56.2 11.9 137 465-611 84-225 (251)
173 PF14938 SNAP: Soluble NSF att 97.8 0.0013 2.8E-08 61.4 16.6 144 404-563 100-264 (282)
174 PF14938 SNAP: Soluble NSF att 97.8 0.014 3E-07 54.6 23.1 101 299-399 157-269 (282)
175 PF13414 TPR_11: TPR repeat; P 97.8 6.1E-05 1.3E-09 53.0 5.6 65 469-533 2-69 (69)
176 cd00189 TPR Tetratricopeptide 97.8 0.00025 5.4E-09 53.7 9.6 92 439-533 5-99 (100)
177 PF05843 Suf: Suppressor of fo 97.8 0.0013 2.8E-08 61.1 15.7 134 399-536 2-141 (280)
178 PF04840 Vps16_C: Vps16, C-ter 97.8 0.037 8E-07 52.1 29.8 110 369-496 179-288 (319)
179 PF01535 PPR: PPR repeat; Int 97.8 3.6E-05 7.8E-10 43.9 3.4 31 99-129 1-31 (31)
180 PF14559 TPR_19: Tetratricopep 97.7 4E-05 8.7E-10 53.7 4.0 49 446-497 3-52 (68)
181 PF12895 Apc3: Anaphase-promot 97.7 0.00012 2.5E-09 53.9 6.6 76 412-494 3-82 (84)
182 PRK10153 DNA-binding transcrip 97.7 0.00083 1.8E-08 67.7 14.6 143 394-539 333-490 (517)
183 PF12688 TPR_5: Tetratrico pep 97.7 0.00041 8.9E-09 54.1 9.4 88 476-563 7-102 (120)
184 CHL00033 ycf3 photosystem I as 97.7 0.00065 1.4E-08 57.9 11.5 61 400-461 37-99 (168)
185 PRK10803 tol-pal system protei 97.7 0.00033 7.1E-09 63.7 10.0 93 473-565 146-246 (263)
186 PF01535 PPR: PPR repeat; Int 97.7 6.3E-05 1.4E-09 42.8 3.6 30 197-226 1-30 (31)
187 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00021 4.6E-09 68.0 8.5 67 499-565 72-141 (453)
188 COG3898 Uncharacterized membra 97.6 0.055 1.2E-06 50.3 26.4 288 209-507 97-400 (531)
189 PF04840 Vps16_C: Vps16, C-ter 97.6 0.063 1.4E-06 50.6 27.3 103 271-389 182-284 (319)
190 KOG1538 Uncharacterized conser 97.6 0.0084 1.8E-07 59.0 18.4 195 171-426 638-845 (1081)
191 PF07079 DUF1347: Protein of u 97.6 0.075 1.6E-06 50.6 38.5 448 5-506 16-529 (549)
192 PF05843 Suf: Suppressor of fo 97.6 0.00075 1.6E-08 62.7 11.1 129 435-565 2-136 (280)
193 KOG0550 Molecular chaperone (D 97.6 0.0097 2.1E-07 55.5 17.7 94 444-542 259-360 (486)
194 PF13428 TPR_14: Tetratricopep 97.6 0.00012 2.7E-09 45.6 4.0 42 503-544 2-43 (44)
195 KOG0543 FKBP-type peptidyl-pro 97.6 0.00063 1.4E-08 63.3 10.1 63 502-564 257-319 (397)
196 KOG1130 Predicted G-alpha GTPa 97.6 0.00065 1.4E-08 62.8 9.9 130 435-564 196-343 (639)
197 PRK10866 outer membrane biogen 97.5 0.013 2.9E-07 52.9 18.4 56 508-563 181-239 (243)
198 PRK15363 pathogenicity island 97.5 0.0031 6.7E-08 51.2 12.6 89 403-497 40-130 (157)
199 KOG2041 WD40 repeat protein [G 97.5 0.12 2.6E-06 51.8 27.7 194 80-321 678-876 (1189)
200 KOG2796 Uncharacterized conser 97.5 0.005 1.1E-07 53.6 13.9 134 437-571 180-321 (366)
201 PF13371 TPR_9: Tetratricopept 97.5 0.00033 7.1E-09 49.9 6.1 66 477-542 2-69 (73)
202 PF08579 RPM2: Mitochondrial r 97.4 0.0018 3.9E-08 48.5 9.2 79 200-278 29-116 (120)
203 PF08579 RPM2: Mitochondrial r 97.4 0.0032 6.8E-08 47.2 9.8 81 299-379 27-116 (120)
204 PF10037 MRP-S27: Mitochondria 97.4 0.0023 5E-08 61.8 11.8 118 25-142 61-182 (429)
205 KOG0543 FKBP-type peptidyl-pro 97.4 0.0027 5.9E-08 59.3 11.6 96 470-565 257-355 (397)
206 PRK10803 tol-pal system protei 97.4 0.0032 7E-08 57.3 12.1 99 436-537 145-252 (263)
207 PRK10866 outer membrane biogen 97.3 0.11 2.5E-06 46.9 22.7 67 296-362 31-99 (243)
208 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.16 3.4E-06 48.3 30.7 134 397-535 396-535 (660)
209 PF13424 TPR_12: Tetratricopep 97.3 0.00033 7.1E-09 50.7 4.0 63 502-564 5-74 (78)
210 PF10037 MRP-S27: Mitochondria 97.3 0.0035 7.6E-08 60.6 11.7 74 299-372 105-178 (429)
211 PF12688 TPR_5: Tetratrico pep 97.2 0.011 2.5E-07 46.1 11.8 103 303-405 7-113 (120)
212 KOG2796 Uncharacterized conser 97.1 0.039 8.4E-07 48.3 15.4 136 299-437 179-322 (366)
213 PF06239 ECSIT: Evolutionarily 97.1 0.0053 1.1E-07 52.3 9.5 98 184-281 33-153 (228)
214 KOG4555 TPR repeat-containing 97.1 0.0043 9.3E-08 47.6 8.0 92 478-569 51-148 (175)
215 PF13525 YfiO: Outer membrane 97.1 0.033 7.1E-07 49.0 15.0 50 508-557 147-199 (203)
216 PF03704 BTAD: Bacterial trans 97.1 0.0085 1.8E-07 49.6 10.7 62 503-564 63-124 (146)
217 KOG1130 Predicted G-alpha GTPa 97.0 0.034 7.3E-07 52.0 14.8 154 400-554 197-373 (639)
218 PF13281 DUF4071: Domain of un 97.0 0.14 3E-06 48.8 19.1 35 501-535 304-338 (374)
219 PRK11906 transcriptional regul 97.0 0.012 2.5E-07 56.7 12.0 144 413-560 273-431 (458)
220 PF13512 TPR_18: Tetratricopep 97.0 0.019 4.1E-07 45.8 11.2 91 477-567 17-130 (142)
221 KOG1538 Uncharacterized conser 97.0 0.073 1.6E-06 52.8 17.0 217 302-564 603-845 (1081)
222 COG4235 Cytochrome c biogenesi 96.9 0.056 1.2E-06 48.9 14.7 104 432-537 154-262 (287)
223 PRK11906 transcriptional regul 96.8 0.063 1.4E-06 51.8 15.5 81 486-566 320-402 (458)
224 KOG1585 Protein required for f 96.8 0.23 4.9E-06 43.3 17.1 87 472-559 152-250 (308)
225 PF06239 ECSIT: Evolutionarily 96.8 0.02 4.4E-07 48.9 10.6 97 286-382 34-153 (228)
226 PF13424 TPR_12: Tetratricopep 96.8 0.0045 9.7E-08 44.6 5.9 60 472-531 7-75 (78)
227 KOG2114 Vacuolar assembly/sort 96.8 0.89 1.9E-05 47.2 24.0 52 372-423 710-761 (933)
228 COG1729 Uncharacterized protei 96.7 0.01 2.2E-07 52.8 8.7 84 482-567 153-246 (262)
229 PF13525 YfiO: Outer membrane 96.7 0.38 8.2E-06 42.4 19.3 59 303-361 11-71 (203)
230 PF07079 DUF1347: Protein of u 96.7 0.66 1.4E-05 44.5 37.9 190 368-564 299-523 (549)
231 PRK11619 lytic murein transgly 96.6 1.2 2.5E-05 46.9 31.4 72 273-346 106-177 (644)
232 KOG1941 Acetylcholine receptor 96.6 0.033 7.1E-07 51.1 11.0 47 307-353 16-64 (518)
233 KOG4234 TPR repeat-containing 96.5 0.0069 1.5E-07 50.5 6.0 90 480-569 105-201 (271)
234 COG0457 NrfG FOG: TPR repeat [ 96.5 0.59 1.3E-05 42.3 26.3 195 367-567 59-267 (291)
235 PF10300 DUF3808: Protein of u 96.5 0.12 2.5E-06 52.1 15.7 159 403-564 193-375 (468)
236 PRK15331 chaperone protein Sic 96.4 0.036 7.9E-07 45.3 9.4 86 442-530 45-133 (165)
237 KOG2066 Vacuolar assembly/sort 96.4 1.5 3.2E-05 45.3 22.4 106 104-243 362-467 (846)
238 KOG2280 Vacuolar assembly/sort 96.4 1.5 3.2E-05 45.0 33.5 113 366-495 683-795 (829)
239 PF12921 ATP13: Mitochondrial 96.3 0.056 1.2E-06 42.8 10.0 97 367-480 2-98 (126)
240 COG3118 Thioredoxin domain-con 96.3 0.29 6.3E-06 44.2 15.3 122 442-567 142-267 (304)
241 KOG0890 Protein kinase of the 96.3 3.3 7.2E-05 48.6 28.4 312 237-567 1389-1733(2382)
242 PF09205 DUF1955: Domain of un 96.2 0.33 7.2E-06 37.8 13.0 141 408-568 12-152 (161)
243 PF13281 DUF4071: Domain of un 96.2 0.75 1.6E-05 44.0 18.4 75 268-342 143-227 (374)
244 PF07719 TPR_2: Tetratricopept 96.2 0.012 2.5E-07 34.1 4.3 32 504-535 3-34 (34)
245 PF00515 TPR_1: Tetratricopept 96.2 0.0086 1.9E-07 34.7 3.7 32 503-534 2-33 (34)
246 KOG1941 Acetylcholine receptor 96.2 1.1 2.3E-05 41.7 18.1 194 268-461 45-273 (518)
247 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.028 6E-07 54.1 8.6 62 470-531 75-141 (453)
248 KOG1920 IkappaB kinase complex 96.1 2.7 5.8E-05 45.7 23.5 78 307-395 975-1054(1265)
249 COG4105 ComL DNA uptake lipopr 96.1 0.92 2E-05 40.3 17.7 58 507-564 172-232 (254)
250 COG0457 NrfG FOG: TPR repeat [ 96.1 1 2.2E-05 40.7 24.8 196 333-534 60-268 (291)
251 KOG2041 WD40 repeat protein [G 96.1 2 4.3E-05 43.7 25.8 63 62-127 689-763 (1189)
252 COG3118 Thioredoxin domain-con 96.0 0.66 1.4E-05 42.0 15.9 148 406-557 142-293 (304)
253 KOG1258 mRNA processing protei 96.0 2 4.2E-05 43.1 27.1 122 434-557 297-421 (577)
254 KOG4555 TPR repeat-containing 95.9 0.021 4.5E-07 44.0 5.4 55 510-564 51-105 (175)
255 PF13512 TPR_18: Tetratricopep 95.9 0.23 5E-06 39.8 11.2 116 405-536 17-133 (142)
256 COG1729 Uncharacterized protei 95.9 0.082 1.8E-06 47.2 9.6 62 476-537 184-250 (262)
257 PF04053 Coatomer_WDAD: Coatom 95.9 0.61 1.3E-05 46.3 16.7 160 305-497 269-429 (443)
258 KOG2610 Uncharacterized conser 95.8 0.11 2.4E-06 47.3 10.4 159 410-572 115-283 (491)
259 PF02259 FAT: FAT domain; Int 95.7 2.3 4.9E-05 41.5 20.4 150 396-549 144-305 (352)
260 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.4 5.3E-05 40.8 31.6 82 28-110 40-121 (660)
261 PF04184 ST7: ST7 protein; In 95.5 1.9 4.2E-05 42.2 17.9 17 520-536 364-380 (539)
262 KOG1258 mRNA processing protei 95.5 3.2 6.8E-05 41.7 32.2 181 366-550 296-489 (577)
263 smart00299 CLH Clathrin heavy 95.4 0.94 2E-05 37.0 14.2 84 337-424 12-95 (140)
264 PF04053 Coatomer_WDAD: Coatom 95.3 0.67 1.5E-05 46.0 14.8 155 75-291 271-427 (443)
265 KOG1586 Protein required for f 95.3 1.2 2.5E-05 38.9 13.9 23 516-538 209-231 (288)
266 PF03704 BTAD: Bacterial trans 95.3 0.22 4.8E-06 41.1 10.0 70 299-369 64-138 (146)
267 KOG1464 COP9 signalosome, subu 95.2 2.1 4.6E-05 38.1 19.6 241 280-526 41-327 (440)
268 COG1747 Uncharacterized N-term 95.2 3.6 7.7E-05 40.4 18.9 157 299-462 68-233 (711)
269 PF13176 TPR_7: Tetratricopept 95.0 0.042 9.1E-07 32.2 3.6 26 538-563 1-26 (36)
270 PF12921 ATP13: Mitochondrial 95.0 0.3 6.6E-06 38.7 9.4 49 227-275 48-97 (126)
271 KOG3941 Intermediate in Toll s 95.0 0.19 4.2E-06 44.7 8.8 98 184-281 53-173 (406)
272 KOG1920 IkappaB kinase complex 95.0 7 0.00015 42.8 22.5 120 369-500 910-1029(1265)
273 KOG2610 Uncharacterized conser 95.0 0.86 1.9E-05 41.8 12.9 174 378-556 114-306 (491)
274 smart00299 CLH Clathrin heavy 94.9 1.7 3.7E-05 35.5 14.9 126 401-547 10-136 (140)
275 PF13428 TPR_14: Tetratricopep 94.9 0.046 1E-06 33.9 3.7 32 536-567 1-32 (44)
276 KOG4648 Uncharacterized conser 94.8 0.098 2.1E-06 47.7 6.7 94 443-539 106-202 (536)
277 COG1747 Uncharacterized N-term 94.7 4.8 0.0001 39.6 21.5 190 366-563 65-286 (711)
278 KOG4648 Uncharacterized conser 94.7 0.059 1.3E-06 49.1 5.1 88 477-564 104-193 (536)
279 PF13181 TPR_8: Tetratricopept 94.7 0.058 1.3E-06 31.0 3.5 31 504-534 3-33 (34)
280 PF04184 ST7: ST7 protein; In 94.5 1.7 3.6E-05 42.6 14.3 147 405-564 175-323 (539)
281 PF07035 Mic1: Colon cancer-as 94.4 2.6 5.7E-05 35.1 14.5 56 169-224 93-148 (167)
282 PF13176 TPR_7: Tetratricopept 94.3 0.069 1.5E-06 31.3 3.3 28 504-531 1-28 (36)
283 PF09613 HrpB1_HrpK: Bacterial 94.1 2.1 4.6E-05 35.2 12.2 88 443-533 19-108 (160)
284 PF09613 HrpB1_HrpK: Bacterial 94.0 0.39 8.4E-06 39.3 8.0 53 513-565 21-73 (160)
285 PF07719 TPR_2: Tetratricopept 93.9 0.077 1.7E-06 30.5 3.0 30 537-566 2-31 (34)
286 TIGR02561 HrpB1_HrpK type III 93.8 0.41 8.8E-06 38.4 7.6 55 513-567 21-75 (153)
287 KOG3941 Intermediate in Toll s 93.6 0.55 1.2E-05 42.0 8.7 96 84-180 53-173 (406)
288 PF14432 DYW_deaminase: DYW fa 93.6 0.076 1.6E-06 41.4 3.2 38 572-621 2-39 (116)
289 PF00515 TPR_1: Tetratricopept 93.5 0.1 2.2E-06 30.0 3.0 30 537-566 2-31 (34)
290 COG2976 Uncharacterized protei 93.5 2.2 4.7E-05 36.2 11.5 87 478-565 97-188 (207)
291 COG4785 NlpI Lipoprotein NlpI, 93.4 4.2 9.2E-05 35.1 13.2 158 398-565 99-266 (297)
292 PRK10941 hypothetical protein; 93.4 0.52 1.1E-05 43.1 8.7 63 505-567 184-246 (269)
293 COG4649 Uncharacterized protei 93.4 4 8.6E-05 33.9 15.1 119 408-530 68-195 (221)
294 KOG1585 Protein required for f 93.3 1.8 3.9E-05 38.0 11.0 20 406-425 39-58 (308)
295 PF09205 DUF1955: Domain of un 92.7 4 8.7E-05 32.1 13.8 139 308-466 13-151 (161)
296 PF07721 TPR_4: Tetratricopept 92.7 0.18 4E-06 26.8 2.9 24 537-560 2-25 (26)
297 KOG4234 TPR repeat-containing 92.6 1.1 2.4E-05 37.9 8.6 101 443-545 104-211 (271)
298 PF06552 TOM20_plant: Plant sp 92.5 0.23 4.9E-06 41.3 4.6 33 518-550 51-83 (186)
299 PF00637 Clathrin: Region in C 92.5 0.021 4.6E-07 47.0 -1.4 86 35-125 12-97 (143)
300 PF13174 TPR_6: Tetratricopept 92.4 0.14 3.1E-06 29.1 2.5 29 538-566 2-30 (33)
301 PF00637 Clathrin: Region in C 92.4 0.018 4E-07 47.4 -1.9 86 338-426 13-98 (143)
302 COG4649 Uncharacterized protei 92.4 4.3 9.3E-05 33.7 11.4 128 435-564 60-195 (221)
303 KOG4642 Chaperone-dependent E3 92.3 0.39 8.5E-06 41.8 5.8 79 484-562 24-104 (284)
304 PF14853 Fis1_TPR_C: Fis1 C-te 92.2 0.96 2.1E-05 29.2 6.2 51 538-614 3-53 (53)
305 PF10300 DUF3808: Protein of u 92.2 15 0.00032 37.4 23.3 112 245-359 247-374 (468)
306 KOG2114 Vacuolar assembly/sort 92.1 18 0.00039 38.2 28.3 54 476-530 711-764 (933)
307 COG3629 DnrI DNA-binding trans 91.8 0.77 1.7E-05 41.9 7.5 62 503-564 154-215 (280)
308 KOG1550 Extracellular protein 91.6 19 0.00041 37.5 22.4 212 347-566 308-539 (552)
309 PF13181 TPR_8: Tetratricopept 91.6 0.34 7.3E-06 27.7 3.5 28 537-564 2-29 (34)
310 PF14561 TPR_20: Tetratricopep 91.5 1 2.2E-05 33.2 6.6 46 522-567 8-53 (90)
311 PF02259 FAT: FAT domain; Int 91.4 10 0.00022 36.9 15.8 67 499-565 143-213 (352)
312 PF13174 TPR_6: Tetratricopept 91.4 0.36 7.8E-06 27.3 3.5 31 505-535 3-33 (33)
313 PF08631 SPO22: Meiosis protei 91.4 12 0.00027 34.8 25.0 60 334-394 86-148 (278)
314 PF08631 SPO22: Meiosis protei 90.9 14 0.0003 34.5 22.8 21 543-563 253-273 (278)
315 PF13374 TPR_10: Tetratricopep 90.8 0.54 1.2E-05 28.4 4.1 27 504-530 4-30 (42)
316 PRK09687 putative lyase; Provi 90.7 14 0.00031 34.4 25.6 68 468-540 204-271 (280)
317 COG4785 NlpI Lipoprotein NlpI, 90.7 0.76 1.6E-05 39.4 5.9 91 443-536 74-167 (297)
318 COG3629 DnrI DNA-binding trans 90.7 0.97 2.1E-05 41.3 7.0 71 66-136 154-230 (280)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 90.6 1.4 3E-05 32.3 6.3 45 13-57 25-69 (103)
320 COG2976 Uncharacterized protei 90.4 10 0.00023 32.3 13.8 91 439-534 94-191 (207)
321 KOG1308 Hsp70-interacting prot 90.2 0.21 4.5E-06 45.9 2.4 88 482-569 126-215 (377)
322 KOG0545 Aryl-hydrocarbon recep 89.9 1.6 3.4E-05 38.4 7.2 62 505-566 233-294 (329)
323 PF10602 RPN7: 26S proteasome 89.9 7.5 0.00016 33.2 11.5 97 400-497 38-140 (177)
324 PF13374 TPR_10: Tetratricopep 89.7 0.59 1.3E-05 28.2 3.6 28 537-564 3-30 (42)
325 PF02284 COX5A: Cytochrome c o 89.6 1.5 3.3E-05 32.5 5.8 43 17-59 32-74 (108)
326 smart00028 TPR Tetratricopepti 89.5 0.77 1.7E-05 25.3 3.9 29 505-533 4-32 (34)
327 PF04097 Nic96: Nup93/Nic96; 89.4 8.8 0.00019 40.4 13.9 86 203-293 265-354 (613)
328 PF14853 Fis1_TPR_C: Fis1 C-te 89.3 1.3 2.7E-05 28.7 4.8 37 505-541 4-40 (53)
329 TIGR02561 HrpB1_HrpK type III 89.2 10 0.00023 30.7 10.8 52 42-94 22-73 (153)
330 KOG0376 Serine-threonine phosp 88.9 0.71 1.5E-05 44.8 4.9 86 479-564 13-100 (476)
331 KOG4507 Uncharacterized conser 88.9 1.4 3E-05 43.8 6.9 100 445-547 618-721 (886)
332 PF11207 DUF2989: Protein of u 88.9 2.4 5.3E-05 36.3 7.6 70 487-556 123-198 (203)
333 PRK15180 Vi polysaccharide bio 88.2 5.9 0.00013 38.6 10.4 88 444-533 333-422 (831)
334 PF04097 Nic96: Nup93/Nic96; 88.0 40 0.00086 35.7 21.6 45 164-209 111-158 (613)
335 PRK09687 putative lyase; Provi 87.9 23 0.0005 33.0 26.2 73 366-444 205-277 (280)
336 PF10602 RPN7: 26S proteasome 87.8 6.5 0.00014 33.6 9.7 62 198-259 38-101 (177)
337 PF13170 DUF4003: Protein of u 87.8 24 0.00052 33.1 15.8 28 212-239 198-225 (297)
338 PF13170 DUF4003: Protein of u 87.7 24 0.00051 33.2 14.0 49 212-260 78-132 (297)
339 KOG4570 Uncharacterized conser 87.5 7.7 0.00017 35.7 10.1 99 260-362 58-165 (418)
340 PF13431 TPR_17: Tetratricopep 87.4 0.99 2.2E-05 25.9 3.2 24 364-387 10-33 (34)
341 PF06552 TOM20_plant: Plant sp 87.2 1.8 3.9E-05 36.2 5.7 45 518-569 96-140 (186)
342 KOG3364 Membrane protein invol 87.1 7.8 0.00017 30.7 8.6 70 467-536 29-105 (149)
343 PF07035 Mic1: Colon cancer-as 87.1 17 0.00036 30.5 13.7 133 216-360 14-148 (167)
344 PF04190 DUF410: Protein of un 86.8 26 0.00055 32.3 15.0 87 159-260 84-170 (260)
345 TIGR03504 FimV_Cterm FimV C-te 86.6 1.3 2.8E-05 27.3 3.5 26 540-565 3-28 (44)
346 PF09986 DUF2225: Uncharacteri 86.6 2.8 6.1E-05 37.0 7.0 64 503-566 119-195 (214)
347 PRK11619 lytic murein transgly 86.3 49 0.0011 35.1 39.3 80 477-556 414-496 (644)
348 COG3947 Response regulator con 86.2 5.2 0.00011 36.3 8.2 60 505-564 282-341 (361)
349 COG2909 MalT ATP-dependent tra 86.0 54 0.0012 35.3 26.2 222 341-563 424-686 (894)
350 KOG4570 Uncharacterized conser 85.8 8.4 0.00018 35.4 9.4 101 361-463 58-164 (418)
351 KOG1586 Protein required for f 85.5 25 0.00055 31.0 15.3 150 276-463 24-183 (288)
352 KOG0276 Vesicle coat complex C 85.4 15 0.00033 37.1 11.7 151 379-563 598-748 (794)
353 cd00923 Cyt_c_Oxidase_Va Cytoc 85.3 8.1 0.00018 28.5 7.4 63 413-478 22-84 (103)
354 KOG0276 Vesicle coat complex C 85.2 8 0.00017 39.0 9.7 75 176-261 648-722 (794)
355 PF02284 COX5A: Cytochrome c o 84.8 8.2 0.00018 28.8 7.3 60 416-478 28-87 (108)
356 COG4455 ImpE Protein of avirul 84.6 4.3 9.3E-05 35.1 6.7 64 473-536 4-69 (273)
357 smart00386 HAT HAT (Half-A-TPR 84.5 1.8 4E-05 24.1 3.4 30 516-545 1-30 (33)
358 smart00028 TPR Tetratricopepti 84.4 1.7 3.7E-05 23.7 3.4 29 537-565 2-30 (34)
359 KOG2066 Vacuolar assembly/sort 84.1 61 0.0013 34.3 31.2 170 72-297 363-536 (846)
360 COG4976 Predicted methyltransf 84.0 1.9 4.1E-05 37.5 4.4 57 512-568 5-61 (287)
361 TIGR02508 type_III_yscG type I 83.8 8.9 0.00019 28.5 7.1 80 44-128 19-98 (115)
362 KOG3824 Huntingtin interacting 83.6 4.7 0.0001 36.7 6.9 53 512-564 126-178 (472)
363 KOG2396 HAT (Half-A-TPR) repea 83.5 50 0.0011 32.9 35.6 89 13-103 89-179 (568)
364 PRK12798 chemotaxis protein; R 83.5 46 0.001 32.4 25.1 181 380-564 125-323 (421)
365 KOG4279 Serine/threonine prote 82.7 27 0.00058 36.5 12.4 183 298-533 202-397 (1226)
366 PHA02875 ankyrin repeat protei 82.0 52 0.0011 32.9 14.9 70 17-90 17-90 (413)
367 PF07721 TPR_4: Tetratricopept 81.9 2.9 6.3E-05 22.1 3.2 20 475-494 6-25 (26)
368 PF11207 DUF2989: Protein of u 81.9 15 0.00033 31.7 9.0 73 415-489 123-197 (203)
369 KOG0551 Hsp90 co-chaperone CNS 81.3 9.1 0.0002 35.6 7.9 94 470-563 81-180 (390)
370 KOG4507 Uncharacterized conser 81.3 6.9 0.00015 39.2 7.6 132 431-567 568-707 (886)
371 COG4105 ComL DNA uptake lipopr 81.1 42 0.0009 30.3 22.7 59 304-362 41-101 (254)
372 TIGR02508 type_III_yscG type I 80.4 22 0.00047 26.6 9.3 62 272-336 45-106 (115)
373 PRK10941 hypothetical protein; 80.1 12 0.00026 34.5 8.5 68 474-541 185-254 (269)
374 PRK13800 putative oxidoreducta 78.2 1.2E+02 0.0027 34.0 26.1 256 286-564 624-880 (897)
375 KOG4642 Chaperone-dependent E3 78.1 23 0.00049 31.4 8.9 79 379-460 22-104 (284)
376 COG2912 Uncharacterized conser 77.9 18 0.00038 32.9 8.6 62 506-567 185-246 (269)
377 KOG2396 HAT (Half-A-TPR) repea 77.1 84 0.0018 31.5 33.2 98 467-564 456-558 (568)
378 PF07720 TPR_3: Tetratricopept 75.5 9.6 0.00021 22.2 4.3 30 505-534 4-35 (36)
379 PF12862 Apc5: Anaphase-promot 75.1 9.4 0.0002 28.4 5.4 53 512-564 8-69 (94)
380 KOG3364 Membrane protein invol 75.0 28 0.0006 27.8 7.8 65 431-497 29-98 (149)
381 PF13929 mRNA_stabil: mRNA sta 74.0 74 0.0016 29.4 15.2 114 383-496 144-264 (292)
382 PF14863 Alkyl_sulf_dimr: Alky 73.4 14 0.00029 30.1 6.2 65 487-554 58-122 (141)
383 KOG4077 Cytochrome c oxidase, 73.4 13 0.00029 29.0 5.6 47 48-94 67-113 (149)
384 KOG0403 Neoplastic transformat 72.4 1E+02 0.0022 30.3 17.1 58 437-496 512-569 (645)
385 COG4976 Predicted methyltransf 72.3 5.8 0.00013 34.6 4.0 56 480-535 5-62 (287)
386 PF10345 Cohesin_load: Cohesin 72.0 1.4E+02 0.0031 31.7 36.7 50 515-564 547-605 (608)
387 KOG1464 COP9 signalosome, subu 71.7 79 0.0017 28.7 17.0 148 178-325 40-219 (440)
388 PF09670 Cas_Cas02710: CRISPR- 71.5 79 0.0017 31.1 12.2 53 408-462 141-197 (379)
389 PF09477 Type_III_YscG: Bacter 71.2 43 0.00093 25.4 7.8 82 42-128 18-99 (116)
390 PF08424 NRDE-2: NRDE-2, neces 70.9 1E+02 0.0022 29.5 14.1 79 487-565 48-131 (321)
391 PF10579 Rapsyn_N: Rapsyn N-te 70.8 9.8 0.00021 26.9 4.1 46 514-559 18-66 (80)
392 TIGR03504 FimV_Cterm FimV C-te 69.6 12 0.00026 23.1 3.9 24 303-326 5-28 (44)
393 COG4455 ImpE Protein of avirul 69.6 79 0.0017 27.8 12.4 123 401-536 4-139 (273)
394 KOG0686 COP9 signalosome, subu 69.1 1.2E+02 0.0025 29.6 13.4 59 167-225 152-216 (466)
395 PF14561 TPR_20: Tetratricopep 69.0 44 0.00095 24.6 8.5 64 499-562 19-85 (90)
396 PF04910 Tcf25: Transcriptiona 68.9 1.2E+02 0.0026 29.6 13.7 57 508-564 109-167 (360)
397 PF12968 DUF3856: Domain of Un 68.7 31 0.00066 26.8 6.6 60 504-563 57-127 (144)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 68.6 35 0.00076 27.1 7.6 42 520-561 81-124 (126)
399 PF15469 Sec5: Exocyst complex 68.5 76 0.0016 27.2 10.5 116 404-542 63-179 (182)
400 PF07163 Pex26: Pex26 protein; 68.4 75 0.0016 29.1 10.0 87 304-390 90-181 (309)
401 PF10579 Rapsyn_N: Rapsyn N-te 68.3 16 0.00034 25.9 4.7 16 447-462 19-34 (80)
402 COG5191 Uncharacterized conser 67.3 12 0.00026 34.4 5.0 77 469-545 106-185 (435)
403 PF09477 Type_III_YscG: Bacter 67.3 53 0.0012 25.0 8.9 79 246-327 21-99 (116)
404 COG3947 Response regulator con 66.2 1.1E+02 0.0024 28.3 11.9 59 400-461 281-340 (361)
405 PF07163 Pex26: Pex26 protein; 66.2 78 0.0017 29.0 9.7 90 405-497 90-185 (309)
406 KOG3807 Predicted membrane pro 66.1 42 0.00091 31.3 8.2 114 404-539 281-399 (556)
407 KOG2063 Vacuolar assembly/sort 65.7 2.2E+02 0.0047 31.4 18.0 131 198-343 506-637 (877)
408 PRK13800 putative oxidoreducta 65.7 2.4E+02 0.0051 31.8 26.7 248 263-530 632-880 (897)
409 COG2909 MalT ATP-dependent tra 65.6 2.1E+02 0.0045 31.2 27.1 24 439-462 623-646 (894)
410 KOG2063 Vacuolar assembly/sort 65.4 2.2E+02 0.0048 31.4 17.3 28 299-326 506-533 (877)
411 KOG2422 Uncharacterized conser 65.2 93 0.002 31.8 10.9 89 37-126 349-447 (665)
412 PF13762 MNE1: Mitochondrial s 65.0 76 0.0016 25.9 9.5 77 168-244 42-128 (145)
413 PF10366 Vps39_1: Vacuolar sor 64.1 64 0.0014 24.8 8.0 27 299-325 41-67 (108)
414 KOG2300 Uncharacterized conser 64.0 1.6E+02 0.0035 29.4 32.6 154 407-562 332-511 (629)
415 PF11846 DUF3366: Domain of un 64.0 28 0.00061 30.2 6.9 30 467-496 141-170 (193)
416 PF10516 SHNi-TPR: SHNi-TPR; 63.9 16 0.00034 21.7 3.5 28 537-564 2-29 (38)
417 cd08819 CARD_MDA5_2 Caspase ac 63.3 54 0.0012 23.9 6.7 38 278-316 48-85 (88)
418 KOG0376 Serine-threonine phosp 63.0 13 0.00028 36.5 4.8 102 405-512 11-115 (476)
419 KOG3824 Huntingtin interacting 62.0 12 0.00025 34.3 4.0 58 482-539 128-187 (472)
420 COG5159 RPN6 26S proteasome re 62.0 36 0.00077 31.1 6.9 127 36-189 9-149 (421)
421 KOG2471 TPR repeat-containing 61.8 1.8E+02 0.0039 29.2 15.2 43 507-549 340-382 (696)
422 PF13929 mRNA_stabil: mRNA sta 60.6 1.4E+02 0.0031 27.6 15.7 57 365-421 200-261 (292)
423 cd08819 CARD_MDA5_2 Caspase ac 60.3 63 0.0014 23.5 6.6 66 148-216 21-86 (88)
424 smart00777 Mad3_BUB1_I Mad3/BU 59.3 67 0.0014 25.5 7.3 40 521-560 82-123 (125)
425 PF04781 DUF627: Protein of un 58.4 51 0.0011 25.3 6.2 37 520-556 62-98 (111)
426 COG4941 Predicted RNA polymera 58.3 1.7E+02 0.0037 27.7 11.4 119 414-537 272-400 (415)
427 PF08967 DUF1884: Domain of un 58.2 13 0.00028 26.2 2.8 25 594-618 6-30 (85)
428 PF13762 MNE1: Mitochondrial s 58.1 90 0.002 25.5 8.0 49 96-144 77-126 (145)
429 PF10366 Vps39_1: Vacuolar sor 57.9 68 0.0015 24.7 7.1 28 197-224 40-67 (108)
430 KOG1550 Extracellular protein 55.7 2.7E+02 0.0058 29.2 19.9 143 181-327 228-394 (552)
431 KOG4077 Cytochrome c oxidase, 55.5 86 0.0019 24.7 7.0 59 416-477 67-125 (149)
432 PF04034 DUF367: Domain of unk 55.0 1E+02 0.0023 24.3 7.9 59 470-528 66-125 (127)
433 PF10255 Paf67: RNA polymerase 54.7 26 0.00057 34.3 5.4 29 535-563 163-191 (404)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 54.0 1.1E+02 0.0024 24.3 8.9 42 452-494 81-123 (126)
435 COG0790 FOG: TPR repeat, SEL1 52.2 2E+02 0.0044 26.8 18.5 115 449-567 128-268 (292)
436 PF11768 DUF3312: Protein of u 52.1 1.6E+02 0.0035 30.1 10.2 24 371-394 412-435 (545)
437 COG0735 Fur Fe2+/Zn2+ uptake r 52.1 70 0.0015 26.2 6.8 64 16-80 7-70 (145)
438 PF02184 HAT: HAT (Half-A-TPR) 52.0 38 0.00081 19.2 3.4 27 517-544 2-28 (32)
439 PF11846 DUF3366: Domain of un 51.8 64 0.0014 28.0 7.0 54 410-463 120-173 (193)
440 KOG2581 26S proteasome regulat 51.6 2.4E+02 0.0053 27.6 11.4 135 399-534 125-279 (493)
441 PF11848 DUF3368: Domain of un 51.2 54 0.0012 20.7 4.6 36 106-141 10-45 (48)
442 PF12862 Apc5: Anaphase-promot 50.8 46 0.001 24.7 5.2 26 506-531 45-70 (94)
443 PF14689 SPOB_a: Sensor_kinase 49.6 36 0.00077 22.9 3.9 24 438-461 27-50 (62)
444 PRK13342 recombination factor 49.6 2.8E+02 0.0061 27.7 15.5 101 228-346 173-279 (413)
445 PF14669 Asp_Glu_race_2: Putat 49.5 1.7E+02 0.0037 25.2 12.9 159 224-392 1-206 (233)
446 TIGR02710 CRISPR-associated pr 48.9 2.7E+02 0.0059 27.3 11.3 19 408-426 140-158 (380)
447 PF11817 Foie-gras_1: Foie gra 48.5 62 0.0013 29.5 6.6 22 440-461 184-205 (247)
448 PF04190 DUF410: Protein of un 48.2 2.3E+02 0.0049 26.2 18.5 158 177-360 2-169 (260)
449 COG5191 Uncharacterized conser 47.9 44 0.00095 31.0 5.2 68 498-565 103-171 (435)
450 KOG0292 Vesicle coat complex C 47.3 24 0.00052 37.6 4.0 96 410-530 605-700 (1202)
451 KOG1498 26S proteasome regulat 46.8 2.9E+02 0.0062 27.0 13.5 206 37-292 20-238 (439)
452 KOG4814 Uncharacterized conser 46.5 2.2E+02 0.0047 29.7 10.1 85 481-565 365-457 (872)
453 PF14044 NETI: NETI protein 46.5 15 0.00033 23.8 1.6 17 602-618 10-26 (57)
454 KOG0545 Aryl-hydrocarbon recep 45.8 2.3E+02 0.005 25.6 11.1 68 473-540 233-302 (329)
455 PF14689 SPOB_a: Sensor_kinase 45.1 39 0.00084 22.7 3.5 29 469-497 22-50 (62)
456 KOG2034 Vacuolar sorting prote 44.1 4.7E+02 0.01 28.7 28.8 52 171-222 364-415 (911)
457 PF04910 Tcf25: Transcriptiona 43.9 3.2E+02 0.0069 26.7 16.4 54 304-357 110-164 (360)
458 cd02680 MIT_calpain7_2 MIT: do 43.8 37 0.00081 23.9 3.3 16 549-564 19-34 (75)
459 KOG4567 GTPase-activating prot 43.6 2.3E+02 0.0051 26.5 9.0 42 51-92 264-305 (370)
460 KOG2581 26S proteasome regulat 43.4 3.3E+02 0.0071 26.7 12.0 130 367-501 124-279 (493)
461 PRK10564 maltose regulon perip 43.3 45 0.00097 31.0 4.7 37 198-234 259-295 (303)
462 PF11848 DUF3368: Domain of un 43.2 84 0.0018 19.8 4.9 31 208-238 14-44 (48)
463 PF11663 Toxin_YhaV: Toxin wit 43.2 33 0.00071 27.3 3.3 33 207-241 106-138 (140)
464 PF13934 ELYS: Nuclear pore co 43.1 2.5E+02 0.0054 25.2 13.1 70 440-513 114-183 (226)
465 KOG1308 Hsp70-interacting prot 42.8 27 0.00058 32.9 3.2 114 446-562 126-241 (377)
466 PRK10564 maltose regulon perip 42.3 44 0.00095 31.0 4.5 42 96-137 254-296 (303)
467 PF11817 Foie-gras_1: Foie gra 42.2 94 0.002 28.4 6.8 51 475-525 183-241 (247)
468 PF00244 14-3-3: 14-3-3 protei 41.4 2.7E+02 0.0059 25.2 12.3 162 404-567 7-200 (236)
469 TIGR02328 conserved hypothetic 40.5 34 0.00074 26.0 2.8 26 596-621 48-73 (120)
470 PF03745 DUF309: Domain of unk 40.0 46 0.001 22.4 3.3 35 6-40 10-44 (62)
471 cd02679 MIT_spastin MIT: domai 39.8 20 0.00042 25.6 1.5 42 514-564 20-67 (79)
472 COG0735 Fur Fe2+/Zn2+ uptake r 38.9 1.9E+02 0.0041 23.7 7.4 36 199-234 23-58 (145)
473 cd00280 TRFH Telomeric Repeat 38.8 2.4E+02 0.0053 24.2 7.8 21 441-461 118-138 (200)
474 PF11663 Toxin_YhaV: Toxin wit 38.8 42 0.0009 26.8 3.2 31 109-141 106-136 (140)
475 KOG2659 LisH motif-containing 38.6 2.8E+02 0.0061 24.7 8.5 91 401-495 29-128 (228)
476 KOG2034 Vacuolar sorting prote 37.8 5.9E+02 0.013 28.0 23.8 23 300-322 533-555 (911)
477 KOG2471 TPR repeat-containing 37.5 4.5E+02 0.0098 26.6 21.9 59 504-562 621-681 (696)
478 KOG0890 Protein kinase of the 36.9 9.5E+02 0.021 30.1 30.2 356 170-543 1388-1796(2382)
479 KOG0292 Vesicle coat complex C 36.8 2.8E+02 0.006 30.3 9.5 26 435-460 673-698 (1202)
480 KOG0403 Neoplastic transformat 36.6 4.4E+02 0.0096 26.2 18.4 56 371-426 513-571 (645)
481 COG5108 RPO41 Mitochondrial DN 35.6 2.3E+02 0.0049 29.7 8.4 85 169-256 32-128 (1117)
482 PF06957 COPI_C: Coatomer (COP 35.5 2.6E+02 0.0057 27.8 8.8 43 492-534 288-332 (422)
483 TIGR02996 rpt_mate_G_obs repea 35.5 99 0.0021 18.9 3.7 33 524-556 4-36 (42)
484 KOG4521 Nuclear pore complex, 35.3 7.4E+02 0.016 28.4 15.7 54 401-456 986-1043(1480)
485 KOG1524 WD40 repeat-containing 35.0 1.9E+02 0.0041 29.2 7.6 88 470-560 573-668 (737)
486 PF15015 NYD-SP12_N: Spermatog 34.9 90 0.002 30.4 5.4 46 511-556 237-282 (569)
487 PRK02287 hypothetical protein; 34.9 2.8E+02 0.0061 23.5 8.0 60 470-529 107-167 (171)
488 PHA02875 ankyrin repeat protei 34.7 4.7E+02 0.01 26.0 16.6 113 172-293 72-192 (413)
489 PRK11639 zinc uptake transcrip 34.7 2E+02 0.0042 24.4 7.0 45 199-243 28-72 (169)
490 PRK13342 recombination factor 34.4 4.9E+02 0.011 26.1 15.2 34 100-133 229-265 (413)
491 COG4941 Predicted RNA polymera 34.1 4.3E+02 0.0092 25.3 9.9 113 449-564 271-393 (415)
492 PF12926 MOZART2: Mitotic-spin 33.2 1.5E+02 0.0033 21.6 5.0 43 15-57 28-70 (88)
493 KOG0687 26S proteasome regulat 32.8 4.4E+02 0.0095 25.1 11.7 19 445-463 192-210 (393)
494 KOG2908 26S proteasome regulat 32.5 4.5E+02 0.0098 25.1 10.4 52 444-495 85-140 (380)
495 COG4259 Uncharacterized protei 32.2 1.7E+02 0.0038 21.9 5.2 30 533-562 69-98 (121)
496 KOG4279 Serine/threonine prote 31.9 5.9E+02 0.013 27.4 10.7 183 198-435 203-400 (1226)
497 PF09986 DUF2225: Uncharacteri 31.9 3.6E+02 0.0078 24.0 8.5 23 475-497 170-192 (214)
498 PRK09462 fur ferric uptake reg 31.9 2E+02 0.0043 23.6 6.6 62 19-81 6-68 (148)
499 cd00280 TRFH Telomeric Repeat 31.8 3.3E+02 0.0073 23.4 13.9 28 510-538 119-146 (200)
500 PF11768 DUF3312: Protein of u 31.7 5.3E+02 0.011 26.6 10.2 56 169-224 412-472 (545)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-96 Score=791.59 Aligned_cols=616 Identities=37% Similarity=0.668 Sum_probs=606.0
Q ss_pred CccchhhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC
Q 006997 1 MIRNSTNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD 80 (622)
Q Consensus 1 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (622)
||++|.+.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|+++|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh----hhhhHHHHHHHH
Q 006997 81 FVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS----FRQGISMHCCVY 156 (622)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~~~~~~~ 156 (622)
+++|.++|++|+ .+|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|. .+.+.+++..+.
T Consensus 238 ~~~A~~lf~~m~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 238 VVSARLVFDRMP--RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHHHHHHHhcCC--CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 999999999999 89999999999999999999999999999999999999999999999998 889999999999
Q ss_pred HhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 006997 157 KLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLN 236 (622)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 236 (622)
+.|+.| |..+|++|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 316 ~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 316 KTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHH
Q 006997 237 LILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (622)
++.+|++.|+++.|.++++.+.+.|+.|+..++++|+.+|+++|++++|.++|++|.++|+++|+++|.+|++.|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 006997 317 VNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK 396 (622)
Q Consensus 317 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 396 (622)
+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 999999986 5899999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHH
Q 006997 397 DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCL 476 (622)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 476 (622)
|..+||+++.+|++.|+.++|+++|++|.+ .|+.||..||+.++.+|.+.|++++|.++|+.|.+.+|+.|+..+|+++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999777999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006997 477 VDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
+++|.+.|++++|.+++++|+.+|+..+|++|+.+|..+|+.+.++.+.+++++++|+++..|..++++|.+.|+|++|.
T Consensus 632 v~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCCCCC
Q 006997 557 TARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLLEAGYIAEADIVP 622 (622)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~pd~~~~~ 622 (622)
++++.|.++|+++.||+||+++++.+|.|.+++.+||+.+++|+.|.++.++|++.||+||++.++
T Consensus 712 ~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~ 777 (857)
T PLN03077 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM 777 (857)
T ss_pred HHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc
Confidence 999999999999999999999999999999999999999999999999999999999999998763
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-81 Score=660.07 Aligned_cols=526 Identities=33% Similarity=0.571 Sum_probs=514.3
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHHHHhhhh----hhhhHHHHHHHHHhCCCCCChhhHh
Q 006997 95 LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLG-LELSASTFVSVVSGCS----FRQGISMHCCVYKLGLLNNEIPLAN 169 (622)
Q Consensus 95 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (622)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|. ...+.+++..+.+.|+.| |..+++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHH
Confidence 4566799999999999999999999999998764 7899999999999998 778899999999999999 999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHH
Q 006997 170 SVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFL 249 (622)
Q Consensus 170 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 249 (622)
.|+.+|++.|+++.|.++|++|++||.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006997 250 ALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVR 329 (622)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 329 (622)
+.+++..+.+.|+.+|..++++|+++|+++|++++|.++|+.|..+|+++||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHH
Q 006997 330 PNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYA 409 (622)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 409 (622)
||..||+.++.+|++.|+++.|.+++..+.+.|++++..++++|+++|+++|++++|.++|++|.++|..+||+|+.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006997 410 IHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 489 (622)
++|+.++|+++|++|.+ .|+.||..||+.++.+|.+.|.+++|.++|+.|.+++|+.|+..+|++++++|.+.|++++|
T Consensus 403 ~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 403 NHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999 99999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 006997 490 LKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTK 569 (622)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (622)
.+++++++..|+..+|++|+.+|..+|+++.|..++++++++.|++...|..++++|.+.|+|++|.++++.|.++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCCCCC
Q 006997 570 EPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLLEAGYIAEADIVP 622 (622)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~pd~~~~~ 622 (622)
.||++|+++++.++.|++++.+||...++|+.|.++..+|++.||+||+++++
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~ 614 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELL 614 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999998764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-80 Score=665.91 Aligned_cols=562 Identities=28% Similarity=0.480 Sum_probs=542.8
Q ss_pred CccchhhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC
Q 006997 1 MIRNSTNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD 80 (622)
Q Consensus 1 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (622)
+|+++.+.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.+..+.+++..+.+.+..++..++|.++..|++.|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh----hhhhHHHHHHHH
Q 006997 81 FVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS----FRQGISMHCCVY 156 (622)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~~~~~~~ 156 (622)
++.|.++|++|+ .||+.+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|. ...+.+++..+.
T Consensus 137 ~~~A~~~f~~m~--~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 137 LVHAWYVFGKMP--ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred hHHHHHHHhcCC--CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 999999999999 89999999999999999999999999999999999999999999999998 788999999999
Q ss_pred HhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 006997 157 KLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLN 236 (622)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 236 (622)
+.|+.+ |..++++|+.+|++.|++++|.++|++|+.+|.++||++|.+|++.|++++|+++|.+|...|+.||..||+.
T Consensus 215 ~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 215 RFGFEL-DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred HcCCCc-ccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHH
Q 006997 237 LILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (622)
++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..+|+.+||++|.+|++.|++++|
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 006997 317 VNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK 396 (622)
Q Consensus 317 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 396 (622)
+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.++
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHH
Q 006997 397 DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCL 476 (622)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 476 (622)
|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naL 530 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNAL 530 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHH
Confidence 999999999999999999999999999985 69999999999999999999999999999999976 999999999999
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHH
Q 006997 477 VDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT--LNPGSTGNYILMANLFTSAGMWKE 554 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~ 554 (622)
+++|.++|++++|.++|+++ .||..+|++++.+|.++|+.++|.++|+++.+ ..| |..+|..++.+|.+.|++++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHH
Confidence 99999999999999999998 78999999999999999999999999999887 456 67789999999999999999
Q ss_pred HHHHHHHhh-hCCCccCC
Q 006997 555 AATARGLMD-DRRLTKEP 571 (622)
Q Consensus 555 A~~~~~~~~-~~~~~~~~ 571 (622)
|.++|+.|. +.|+.+..
T Consensus 608 a~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHHhCCCCch
Confidence 999999998 56776643
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-67 Score=550.52 Aligned_cols=460 Identities=27% Similarity=0.483 Sum_probs=445.5
Q ss_pred ccchhhcCCchhHHHHHHHHHhCC-CCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC
Q 006997 2 IRNSTNNGSFEETLSTYSSMLQTG-VHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD 80 (622)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (622)
|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.+++.|+++|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 567899999999999999998864 7899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh----hhhhHHHHHHHH
Q 006997 81 FVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS----FRQGISMHCCVY 156 (622)
Q Consensus 81 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~~~~~~~ 156 (622)
+++|.++|++|+ .||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|. ...+.+++..+.
T Consensus 174 ~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 174 LIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999999999 89999999999999999999999999999999999999999999999998 788999999999
Q ss_pred HhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 006997 157 KLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLN 236 (622)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 236 (622)
+.|+.+ |..++++|+++|+++|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 252 ~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 252 KTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred HhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHH
Q 006997 237 LILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (622)
++.+|++.|+++.|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|+.++|
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC-
Q 006997 317 VNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVL-NGLESNRQVQTSLIHMFSKCGRINKAKEVFERVP- 394 (622)
Q Consensus 317 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 394 (622)
+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++.
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~ 490 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999976 5999999999999999999999999999999997
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC
Q 006997 395 DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP 468 (622)
Q Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 468 (622)
.|+..+|++++.+|...|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.++ |+..
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 58999999999999999999999999999876 6775 578999999999999999999999999977 7754
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-65 Score=539.16 Aligned_cols=509 Identities=20% Similarity=0.267 Sum_probs=465.2
Q ss_pred CCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcC-CCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHH
Q 006997 26 VHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGF-QQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSI 104 (622)
Q Consensus 26 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 104 (622)
..++...|..++..|++.|+++.|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|+ .|+..+|+.+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~--~pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR--NPTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC--CCCHHHHHHH
Confidence 345667899999999999999999999999999985 5778888999999999999999999999999 6999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHH
Q 006997 105 ISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEA 184 (622)
Q Consensus 105 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 184 (622)
+.+|++.|+++.|.++|++|.+.|+.||..+| ++||.+|++.|++++|
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~ty--------------------------------nsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLY--------------------------------TTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH--------------------------------HHHHHHHHhCcCHHHH
Confidence 99999999999999999999999988877776 8888999999999999
Q ss_pred HHHHhhcC----CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH-
Q 006997 185 RSIFDEIG----ETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLK- 259 (622)
Q Consensus 185 ~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 259 (622)
.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|..
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999997 4899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -hCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 006997 260 -SGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE----KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEAT 334 (622)
Q Consensus 260 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 334 (622)
.|+.||..+|++++.+|++.|++++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 572 ~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 67899999999999999999999999999999954 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC----CCChhHHHHHHHHHHH
Q 006997 335 LATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVP----DKDLAVWSAMINGYAI 410 (622)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 410 (622)
|+.++.+|++.|++++|.++++.|.+.|+.|+..+|++|+.+|+++|++++|.++|++|. .||..+|+.|+.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 5899999999999999
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c---
Q 006997 411 HGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR----A--- 483 (622)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~--- 483 (622)
.|++++|.++|++|.+ .|+.||..||+.++.+|++.|+++.|.+++++|.+. |+.||..+|++++..|.+ +
T Consensus 732 ~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 732 GNQLPKALEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred CCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998 999999999999999999999999999999999977 999999999999876432 2
Q ss_pred ----------------CChHHHHHHHHhCC---CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCCCCchHHHHH
Q 006997 484 ----------------GRFDLALKTIHEMP---VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT-LNPGSTGNYILMA 543 (622)
Q Consensus 484 ----------------g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~ 543 (622)
+..++|..+|++|. ..||..+|+.++.++.+.+..+.+..+++.+.. -.+.+..+|..++
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 23468999999997 789999999999888788888888888876543 3344678899999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCccCCC
Q 006997 544 NLFTSAGMWKEAATARGLMDDRRLTKEPG 572 (622)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 572 (622)
+.+.+. .++|..+++.|...|+.+...
T Consensus 890 ~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 890 DGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 987332 368999999999999977653
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-64 Score=528.88 Aligned_cols=493 Identities=16% Similarity=0.251 Sum_probs=411.9
Q ss_pred ccchhhcCCchhHHHHHHHHHhCCC-CCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC
Q 006997 2 IRNSTNNGSFEETLSTYSSMLQTGV-HGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD 80 (622)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (622)
+..+.+.|++++|+++|+.|.+.|+ .|+..+++.++..|.+.|..+.|..+++.|.. ||..+|+.++.+|++.|+
T Consensus 377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence 4567889999999999999999986 56777888899999999999999999998864 999999999999999999
Q ss_pred hhHHHHHhccCCCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHh
Q 006997 81 FVSSRKVLDEMPVR--LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKL 158 (622)
Q Consensus 81 ~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~ 158 (622)
++.|.++|+.|.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy---------------------- 510 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF---------------------- 510 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH----------------------
Confidence 99999999999876 799999999999999999999999999999999999887777
Q ss_pred CCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHcCCChhHHHHHHHHHHH--CCCCCCHh
Q 006997 159 GLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE----TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRR--MSVTPDLV 232 (622)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~ 232 (622)
+.+|.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|.++|++|.. .|+.||..
T Consensus 511 ----------naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 511 ----------GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred ----------HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 6777777888888888888877753 6777888888888888888888888888865 56778888
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHH
Q 006997 233 VFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVL----EKSVFLWTSMIGGYA 308 (622)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~ 308 (622)
+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888887774 457778888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006997 309 QLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKE 388 (622)
Q Consensus 309 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (622)
+.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.||.+|++.|++++|.+
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888877788888888888888888888888888
Q ss_pred HhccCC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhc------------------
Q 006997 389 VFERVP----DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSH------------------ 446 (622)
Q Consensus 389 ~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~------------------ 446 (622)
+|++|. .||..+|+.++.+|++.|+.++|.+++.+|.+ .|+.||..+|+.++..|.+
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 888775 37778888888888888888888888888887 7888888888877765432
Q ss_pred -----cCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCcHHhHHHHHHHHHhcCCH
Q 006997 447 -----SGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP---VEVQAQVWAPLLSACMKHHNV 518 (622)
Q Consensus 447 -----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 518 (622)
.+..+.|..+|++|.+. |+.||..+|+.++.++.+.+....+..+++.|. ..|+..+|++++.++.+. .
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~ 896 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--D 896 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--h
Confidence 12246799999999987 999999999999999989999999999999886 566788999999988432 4
Q ss_pred HHHHHHHHHHHcc--CCC
Q 006997 519 ELGEYAAKNLLTL--NPG 534 (622)
Q Consensus 519 ~~a~~~~~~~~~~--~p~ 534 (622)
++|..+++.+.+. .|+
T Consensus 897 ~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 6899999999874 454
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-34 Score=321.31 Aligned_cols=549 Identities=15% Similarity=0.103 Sum_probs=362.8
Q ss_pred chhhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhH
Q 006997 4 NSTNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVS 83 (622)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (622)
.+...|++++|...|+.+.+.. +.+...+..+...+...|+++.|...++.+.... +.+...+..+...+.+.|++++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3556788888888888877753 2244456666777778888888888888877665 4566777778888888888888
Q ss_pred HHHHhccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh----hhhhHHHHHHHHHh
Q 006997 84 SRKVLDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS----FRQGISMHCCVYKL 158 (622)
Q Consensus 84 A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~~~~~~~~~ 158 (622)
|.+.|+.+... +.+...|..+...+...|++++|++.++.+.+.+..+.. ....+...+. .+.+..++..+.+.
T Consensus 382 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGR-ADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchh-hHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 88888877654 445566777777778888888888888877764322211 1112222222 56666666666553
Q ss_pred CCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHH
Q 006997 159 GLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFL 235 (622)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 235 (622)
. |++..++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++...+ +.+..++.
T Consensus 461 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 461 Q--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred C--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 2 33566677777777777777777777776643 334556666777777777777777777776643 33455666
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCC
Q 006997 236 NLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE---KSVFLWTSMIGGYAQLGY 312 (622)
Q Consensus 236 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 312 (622)
.+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..++..+...|+
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 67777777777777777777776654 44555666677777777777777777776642 345667777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 006997 313 PSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFER 392 (622)
Q Consensus 313 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (622)
+++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776643 2345556666666777777777777777766554 44556666677777777777777777766
Q ss_pred CCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC
Q 006997 393 VPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS 469 (622)
Q Consensus 393 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 469 (622)
+.+ .+...+..+...+...|++++|.+.|+++.. ..|+..++..+..++.+.|++++|.+.++++.+. .+.+
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~ 769 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPND 769 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC
Confidence 653 2445566666666677777777777777666 4455555666666666777777777777666643 2334
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...+..+...|...|++++|.++|+++. .++++..++.++..+...|+ ++|+..+++++++.|+++..+..++.++.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5666666666777777777777776664 33445566666666666666 55666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHhhhCCC
Q 006997 548 SAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~ 567 (622)
..|++++|.+.++++.+.++
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 66666666666666666544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-34 Score=319.53 Aligned_cols=544 Identities=11% Similarity=0.016 Sum_probs=383.8
Q ss_pred hhhcCCchhHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhH
Q 006997 5 STNNGSFEETLSTYSSMLQTGVHGN-SFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVS 83 (622)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (622)
+...|++++|++.|+.+.+.+ |+ ...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++
T Consensus 271 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 271 DFQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHH
Confidence 346677888888887777643 22 2233344455667778888888888777664 4455666677777778888888
Q ss_pred HHHHhccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhh-hh----hhhhHHHHHHHHH
Q 006997 84 SRKVLDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSG-CS----FRQGISMHCCVYK 157 (622)
Q Consensus 84 A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~----~~~~~~~~~~~~~ 157 (622)
|...++.+... +.+...++.+...+.+.|++++|.++|+++.+. .|+.......+.. +. ...+...+..+.+
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 425 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQ 425 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 88887776554 445667777777788888888888888877664 3433332222222 22 5666666766665
Q ss_pred hCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHH
Q 006997 158 LGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVF 234 (622)
Q Consensus 158 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 234 (622)
.... .......++..+.+.|++++|..+++.+.. .+...|+.+...+...|++++|.+.|+++.+.. +.+...+
T Consensus 426 ~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 502 (899)
T TIGR02917 426 LDPE--LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAA 502 (899)
T ss_pred hCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHH
Confidence 5432 344555667777788888888888877754 345677777788888888888888888777643 2344556
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcC
Q 006997 235 LNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE---KSVFLWTSMIGGYAQLG 311 (622)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 311 (622)
..+...+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...|+++.. .+...+..++..|...|
T Consensus 503 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 503 ANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCC
Confidence 667777777788888888888777665 55666777777778888888888888777633 24556677777788888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 006997 312 YPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFE 391 (622)
Q Consensus 312 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (622)
++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.++..+..+..+|.+.|++++|...|+
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888777653 4456677777777888888888888887777654 4456667777777888888888888887
Q ss_pred cCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC
Q 006997 392 RVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP 468 (622)
Q Consensus 392 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 468 (622)
++.+ .+..++..++..+...|++++|.++++.+.+ .. +++...+..+...+...|++++|.+.|+.+... .|
T Consensus 660 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~ 734 (899)
T TIGR02917 660 RALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-QH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---AP 734 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CC
Confidence 7653 3456777777778888888888888888776 22 334566677777777888888888888877743 56
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
+..++..++.++.+.|++++|.+.++++. .+.+...+..++..+...|++++|.+.|+++++..|+++.++..+++++
T Consensus 735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 735 SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 55667777777888888888888777765 3445667777777777788888888888888888887777888888888
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 006997 547 TSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (622)
...|+ ++|+..++++.+.
T Consensus 815 ~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKL 832 (899)
T ss_pred HhcCc-HHHHHHHHHHHhh
Confidence 88888 7788888777654
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=4.6e-26 Score=252.18 Aligned_cols=543 Identities=11% Similarity=0.033 Sum_probs=400.5
Q ss_pred chhhcCCchhHHHHHHHHHhCCCCCCccc-HHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChh
Q 006997 4 NSTNNGSFEETLSTYSSMLQTGVHGNSFT-FPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFV 82 (622)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (622)
.+...|++++|++.|+++.+.+ +|+... ...........++.++|.+.++.+.+.. +.+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 4667899999999999998753 333221 1111222334689999999999999885 556778888999999999999
Q ss_pred HHHHHhccCCCCCCC----cchH-----------------HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHh
Q 006997 83 SSRKVLDEMPVRLRS----VVSW-----------------NSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVS 141 (622)
Q Consensus 83 ~A~~~~~~~~~~~~~----~~~~-----------------~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 141 (622)
+|+..|+++....+. ...| ...+..+-.......|...+..+......|+......-..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 999999987543211 0111 1111111122223445555555443322232221110011
Q ss_pred hhh---hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC--CCc---chHHH------------
Q 006997 142 GCS---FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE--TSI---VSWTT------------ 201 (622)
Q Consensus 142 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------ 201 (622)
... .+.+...+...++.. |.+..++..+...|.+.|++++|+..|++..+ |+. ..|..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 111 778888888888753 44788889999999999999999999998765 322 12222
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 006997 202 IIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGD 281 (622)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (622)
....+.+.|++++|+..|++..... +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 2346778999999999999998863 3345667778889999999999999999998875 455666777777775 467
Q ss_pred HHHHHHHHhhcCCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 006997 282 LELARRVFDAVLEKS------------VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLS 349 (622)
Q Consensus 282 ~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 349 (622)
.++|..+++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+...|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 899999988775432 1234556778889999999999999998864 224566778888999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC----h---------hHHHHHHHHHHHcCCHHH
Q 006997 350 KGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKD----L---------AVWSAMINGYAIHGMGDQ 416 (622)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~ 416 (622)
+|...++.+.+.. +.++..+..+...+...++.++|...++.+.... . ..+......+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999998765 4455555566667788999999999999886421 1 112344567889999999
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006997 417 ALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHE 495 (622)
Q Consensus 417 a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (622)
|.++++ . .+++...+..+...+.+.|++++|+..|+++.+. .| +...+..++..|...|++++|++.++.
T Consensus 592 A~~~l~---~---~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 592 AEALLR---Q---QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHH---h---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999987 2 3345567778889999999999999999999954 45 578888999999999999999999998
Q ss_pred CC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc------hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 496 MP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG------NYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 496 ~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.. ..| +...+..+..++...|++++|.++++++++..|+++. ++..++.++.+.|++++|++.|++...
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 87 444 4666778888999999999999999999998776543 667789999999999999999998864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.4e-26 Score=254.48 Aligned_cols=550 Identities=12% Similarity=0.031 Sum_probs=406.9
Q ss_pred cchhhcCCchhHHHHHHHHHhCCCCCCcccH-----------------HHHHHHhhccCChhhHHHHHHHHHHhcCCCCc
Q 006997 3 RNSTNNGSFEETLSTYSSMLQTGVHGNSFTF-----------------PLVLKACANINSIWDGKRVHSHVLKVGFQQDA 65 (622)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 65 (622)
..+.+.|+.++|.+.++++.+. .|+...+ ..+.+.+...|++++|.+.++.+.+.+ +++.
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~ 146 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL 146 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh
Confidence 4567899999999999999985 3444332 223446788999999999999998765 4443
Q ss_pred hhHHHHHH-HhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC--hhhHHHH--
Q 006997 66 FVQTGLID-MYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELS--ASTFVSV-- 139 (622)
Q Consensus 66 ~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~t~~~l-- 139 (622)
........ .....|+.++|++.|+.+.+. +.+...+..+...+...|++++|+..++++.+...... ...+...
T Consensus 147 ~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 147 DLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 32111222 223459999999999998876 55677788899999999999999999999865321100 0011010
Q ss_pred -----------Hhh----hh----hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC--C-Ccc
Q 006997 140 -----------VSG----CS----FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE--T-SIV 197 (622)
Q Consensus 140 -----------l~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~ 197 (622)
+.. +. ...+...+.........| + .........+...|++++|+..|++..+ | +..
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp-~-~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~ 304 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP-A-FRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE 304 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc-c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 111 11 112223333322222222 1 1122345677889999999999998865 3 567
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHhHH------------HHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 006997 198 SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTP-DLVVF------------LNLILGCAQVGNLFLALSMHSLLLKSGYNN 264 (622)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (622)
.+..+..++.+.|++++|+..|++..+..... +...+ ......+.+.|++++|...++++++.. +.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~ 383 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NT 383 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 88999999999999999999999988753221 11111 122345678899999999999999875 56
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--------CCHH
Q 006997 265 EDPLDNLLVSMYTKCGDLELARRVFDAVLE---KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVR--------PNEA 333 (622)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~ 333 (622)
+...+..+...+...|++++|++.|+++.+ .+..++..+...|. .++.++|+..++.+...... ....
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 677788899999999999999999999864 24567777777774 46789999988775432100 0112
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHHHHH
Q 006997 334 TLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--K-DLAVWSAMINGYAI 410 (622)
Q Consensus 334 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 410 (622)
.+..+...+...|++++|.+.++++.+.. |.++.++..+...|.+.|++++|...++++.+ | +...+..+...+..
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34556677888999999999999999876 55677888899999999999999999998753 3 44455555556678
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHH---------HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 006997 411 HGMGDQALNLFYKMQHVEGLKPDAV---------VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLG 481 (622)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~p~~~---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 481 (622)
.++.++|+..++++.. ....++.. .+......+...|+.++|..+++. .+++...+..+...+.
T Consensus 542 ~~~~~~Al~~l~~l~~-~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 542 SDRDRAALAHLNTLPR-AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred CCCHHHHHHHHHhCCc-hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHH
Confidence 8999999999998764 22222221 123456678899999999999872 2456677788999999
Q ss_pred hcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006997 482 RAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (622)
+.|++++|++.++++. .+.+...+..++..+...|++++|++.++++++..|+++..+..++.++.+.|++++|.+++
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999987 34457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCC
Q 006997 560 GLMDDRRL 567 (622)
Q Consensus 560 ~~~~~~~~ 567 (622)
+++.....
T Consensus 695 ~~al~~~~ 702 (1157)
T PRK11447 695 NRLIPQAK 702 (1157)
T ss_pred HHHhhhCc
Confidence 99987544
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.1e-22 Score=214.78 Aligned_cols=538 Identities=10% Similarity=-0.014 Sum_probs=353.1
Q ss_pred hhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHH
Q 006997 6 TNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSR 85 (622)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 85 (622)
...|++++|++.|+...+.... ++.++..+...+...|+.++|+...++..+.. |+...+..++..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 3458888999999988885433 35567778888888999999999988888774 4433333333222 8888888
Q ss_pred HHhccCCCC-CCCcchHHHHHHH--------HHhCCCchHHHHHHHHHHHcCCCCChhhHHHH-Hhhhh----hhhhHHH
Q 006997 86 KVLDEMPVR-LRSVVSWNSIISA--------HSRACLNDEAILVLKEMWVLGLELSASTFVSV-VSGCS----FRQGISM 151 (622)
Q Consensus 86 ~~~~~~~~~-~~~~~~~~~li~~--------~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~----~~~~~~~ 151 (622)
.+++++... +.+...+..+... |.+. ++|.+.++ .......|+..+.... ...+. ++.+..+
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 888888766 3345555555554 4444 44444444 3332233334333333 33333 5667777
Q ss_pred HHHHHHhCCCCCChhhHhHHHHHHHh-cCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCC-C
Q 006997 152 HCCVYKLGLLNNEIPLANSVMSMYAK-FGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVT-P 229 (622)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p 229 (622)
+..+.+.+.. +......|...|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++...... |
T Consensus 205 L~~L~k~~pl--~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 205 YNEARQQNTL--SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHHhcCCC--CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 7777777643 44445566667776 366 77777766544456777778888888888888888888776443211 2
Q ss_pred CHhHHHHH------------------------------HHHHhccCChHHHHHH--------------------------
Q 006997 230 DLVVFLNL------------------------------ILGCAQVGNLFLALSM-------------------------- 253 (622)
Q Consensus 230 ~~~~~~~l------------------------------l~~~~~~~~~~~a~~~-------------------------- 253 (622)
+..++..+ +..+.+.++++.++++
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence 22222111 2333333444433333
Q ss_pred ---HHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----CHHHHHHHHHHHHhcCC---hHHHHHH--
Q 006997 254 ---HSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE-K-----SVFLWTSMIGGYAQLGY---PSEAVNL-- 319 (622)
Q Consensus 254 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~---~~~a~~~-- 319 (622)
+..+.+.. +-+.....-+.-...+.|+.++|..+|+.... + +...-+-++..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 362 LRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 22221110 22333333344445667888888888887754 1 22344466667766655 3333322
Q ss_pred --------------------HHHHHh-CCC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006997 320 --------------------FKRLLK-TSV-RP--NEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIH 375 (622)
Q Consensus 320 --------------------~~~m~~-~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (622)
+..... .+. ++ +...+..+..++.. ++.++|...+....... |+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHH
Confidence 111111 111 22 45566666666655 78888888777776654 34333334455
Q ss_pred HHHhcCChHHHHHHhccCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHH
Q 006997 376 MFSKCGRINKAKEVFERVPD--KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDD 452 (622)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~ 452 (622)
.+...|++++|...|+++.. ++...+..+...+.+.|++++|...+++..+ ..|+. ..+..+.......|++++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~---l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ---RGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHhCCCHHH
Confidence 55688999999999987663 3445566677788889999999999999887 44554 333344445556799999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 453 GLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 453 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
|...+++..+ +.|+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++...|++++|+..++++++
T Consensus 595 Al~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999884 47788888889999999999999999999886 444 466788888889999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 531 LNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
++|+++.++..++.++...|++++|+..+++..+..
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999887644
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-24 Score=200.01 Aligned_cols=379 Identities=15% Similarity=0.177 Sum_probs=329.4
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHH
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLN-LIL 239 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~ 239 (622)
-..+|+.+.+.+-..|++++|+.+++.+.+ ..+.+|-.+..++...|+.+.|.+.|.+..+ +.|+.....+ +..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 566788999999999999999999999876 4568899999999999999999999999887 4677665443 333
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCH---HHHHHHHHHHHhcCChHHH
Q 006997 240 GCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSV---FLWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 316 (622)
.....|++++|...+.+.++.. +.-...|..|...+-..|+...|+..|++..+-|+ .+|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 4445799999999998888764 44566788899999999999999999999976554 6899999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC
Q 006997 317 VNLFKRLLKTSVRPN-EATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD 395 (622)
Q Consensus 317 ~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 395 (622)
+..|.+.... .|+ ...+..+...|-..|.++.|+..+++..+.. |.-+..|+.|..++...|++.+|...|.+...
T Consensus 272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999988775 454 4677788888999999999999999998875 44578999999999999999999999998774
Q ss_pred --C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-h
Q 006997 396 --K-DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-I 470 (622)
Q Consensus 396 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 470 (622)
| -..+.+.+...|...|.+++|..+|.+..+ +.|. ...++.+...|-+.|++++|+..|++.. .+.|+ .
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fA 422 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFA 422 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHH
Confidence 3 446788899999999999999999999998 8888 4679999999999999999999999998 67887 6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 471 EHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
..|+.+...|...|+...|++.+.+++ ..|. ....+.|...|...|+..+|+..|+.++.+.|+.+.++-.++.++.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 789999999999999999999999987 5665 66899999999999999999999999999999999999999988766
Q ss_pred cCChHH
Q 006997 549 AGMWKE 554 (622)
Q Consensus 549 ~g~~~~ 554 (622)
-.+|.+
T Consensus 503 vcdw~D 508 (966)
T KOG4626|consen 503 VCDWTD 508 (966)
T ss_pred Hhcccc
Confidence 655555
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.8e-22 Score=208.05 Aligned_cols=540 Identities=10% Similarity=-0.014 Sum_probs=388.3
Q ss_pred ccchhhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHH-------
Q 006997 2 IRNSTNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDM------- 74 (622)
Q Consensus 2 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------- 74 (622)
.+.|...|++++|+..+++..+. .|+...|..++..+ ++.+.|..+++++.+.. +.+..++..+...
T Consensus 85 A~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 85 AEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchh
Confidence 46789999999999999999985 45555555555333 88889999999999986 5566777777666
Q ss_pred -hhcCCChhHHHHHhccCCCCCCCcchHHHH-HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhh-hhh--hhhH
Q 006997 75 -YSKCSDFVSSRKVLDEMPVRLRSVVSWNSI-ISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSG-CSF--RQGI 149 (622)
Q Consensus 75 -~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~--~~~~ 149 (622)
|.+.++..++++ ..... ..|+....... ...|.+.|++++|++.+.++.+.+ |....+...+.. +.- .. .
T Consensus 159 ~y~q~eqAl~AL~-lr~~~-~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~ 233 (987)
T PRK09782 159 RLAQLPVARAQLN-DATFA-ASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-D 233 (987)
T ss_pred hhhhHHHHHHHHH-HhhhC-CCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-H
Confidence 777766666666 22222 12234444444 889999999999999999999975 333333222222 221 11 2
Q ss_pred HHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC-----CCcc---------------------------
Q 006997 150 SMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE-----TSIV--------------------------- 197 (622)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--------------------------- 197 (622)
++... .+..+. .+..++..++..|.+.|+.++|.+++++++. |+..
T Consensus 234 ~a~al-~~~~lk-~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~ 311 (987)
T PRK09782 234 RLLAL-QSQGIF-TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN 311 (987)
T ss_pred HHHHH-hchhcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence 22222 222333 3888999999999999999999999998864 1111
Q ss_pred ---hHHHHHHHHHcCCChhHHHHHHH-----------------------------HHHHCCCCCCHhHHHHHHHHHhccC
Q 006997 198 ---SWTTIIGGYVNVGNVNEAFGLCN-----------------------------QMRRMSVTPDLVVFLNLILGCAQVG 245 (622)
Q Consensus 198 ---~~~~li~~~~~~~~~~~a~~~~~-----------------------------~m~~~~~~p~~~~~~~ll~~~~~~~ 245 (622)
..-.++..+.+.++++.+.++.. .|... .+-+......+.-.....|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcc
Confidence 11222455666666665554421 11110 0112222223333345678
Q ss_pred ChHHHHHHHHHHHHh-C-CCCCchhHHHHHHHHHhcCC---HHHHHHH-------------------------HhhcCC-
Q 006997 246 NLFLALSMHSLLLKS-G-YNNEDPLDNLLVSMYTKCGD---LELARRV-------------------------FDAVLE- 294 (622)
Q Consensus 246 ~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~-------------------------~~~~~~- 294 (622)
+.++|.++++..... + -..+....+-|+..|.+.+. ..++..+ +.....
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 899999999988763 1 22344556678888887766 3333333 222221
Q ss_pred --C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHH
Q 006997 295 --K--SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQ 370 (622)
Q Consensus 295 --~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 370 (622)
+ +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++.+... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 2 56678888888776 8999999988888775 466655445555667899999999999987654 3444456
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhcc
Q 006997 371 TSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAM---INGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHS 447 (622)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 447 (622)
..+..++.+.|++++|...|+...+.++...... .......|++++|+..+++..+ ..|+...+..+..++.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHC
Confidence 6778888999999999999998875443333333 2333455999999999999998 778888899999999999
Q ss_pred CchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHH
Q 006997 448 GMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYA 524 (622)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 524 (622)
|++++|+..+++.... .| +...+..+...+...|++++|++.++++. ..| +...+..+..++...|++++|+..
T Consensus 623 G~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 623 HNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999954 66 57778888999999999999999999886 444 577899999999999999999999
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 525 AKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
++++++++|+++.+....+++..+..+++.|.+.+++.-.-.
T Consensus 700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999998665533
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.5e-23 Score=193.14 Aligned_cols=361 Identities=14% Similarity=0.176 Sum_probs=311.7
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPD-LVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSM 275 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 275 (622)
.+|..+...+-..|++++|+.+++.+.+. +|+ ...|..+..++...|+.+.|.+.|.+.++.+ |........+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHH
Confidence 46888899999999999999999999885 454 6688889999999999999999999888764 2223344456666
Q ss_pred HHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChHHH
Q 006997 276 YTKCGDLELARRVFDAVLEKS---VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNE-ATLATTLSACAELGSLSKG 351 (622)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a 351 (622)
....|++.+|...|.+....+ .++|+.|...+..+|+...|+..|++..+. .|+. ..|..|...|...+.++.|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 777899999999888775443 378999999999999999999999999875 4543 5788889999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 006997 352 KEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KD-LAVWSAMINGYAIHGMGDQALNLFYKMQHVE 428 (622)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (622)
...+..+.... +....++..+...|..+|.++-|+..|++..+ |+ +..|+.|..++-..|+..+|...+.+...
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-- 348 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-- 348 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--
Confidence 99998887665 45667788888889999999999999999875 33 46899999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHh
Q 006997 429 GLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQV 504 (622)
Q Consensus 429 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~ 504 (622)
+.|+ ....+.+...+...|.++.|..+|.... .+.|. ....+.|...|-.+|++++|+..++++. +.|. ...
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 7777 5688999999999999999999999988 44665 6778899999999999999999999987 7777 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTK 569 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (622)
++.++..|...|+.+.|.+.+.+++..+|.-++++..|+.+|...|++.+|++-|+..++-.+..
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988754433
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.2e-20 Score=194.51 Aligned_cols=417 Identities=14% Similarity=0.022 Sum_probs=291.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCC
Q 006997 101 WNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGK 180 (622)
Q Consensus 101 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 180 (622)
+......+.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~--------------------------------~~~~~n~a~~~~~l~~ 175 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPD--------------------------------PVYYSNRAACHNALGD 175 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc--------------------------------hHHHHHHHHHHHHhCC
Confidence 445667788889999999999887753 343 3344677778888899
Q ss_pred hHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHH
Q 006997 181 VNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLL 257 (622)
Q Consensus 181 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 257 (622)
+++|+..++...+ .+..+|..+..+|...|++++|+..|......+. .+......++..... ..+.......
T Consensus 176 ~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~ 250 (615)
T TIGR00990 176 WEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEI 250 (615)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHH
Confidence 9999998888765 2445788888889999999999888876654321 111111122221111 1222222222
Q ss_pred HHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCH---HHHHHHHHH---HHhcCChHHHHHHHHHHHhCC-CCC
Q 006997 258 LKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSV---FLWTSMIGG---YAQLGYPSEAVNLFKRLLKTS-VRP 330 (622)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~-~~~ 330 (622)
.+.. +++...+..+.. |...........-+....+.+. ..+..+... ....+++++|.+.|++..+.+ ..|
T Consensus 251 l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 251 LETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred HhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 2222 233333333322 2221111111111111111111 111111111 123478999999999998865 233
Q ss_pred -CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHH
Q 006997 331 -NEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMIN 406 (622)
Q Consensus 331 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 406 (622)
....+..+...+...|++++|...++.+.+.. +.....+..+..++...|++++|...|+++.+ .+...|..+..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34567777778888999999999999998765 44566788889999999999999999987763 35678888999
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAG 484 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 484 (622)
.+...|++++|+..|++..+ ..|+ ...+..+..++.+.|++++|+..|++.... .| ++..++.+..++...|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSID---LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHH---cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcc
Confidence 99999999999999999998 6675 567778888999999999999999999854 45 5788899999999999
Q ss_pred ChHHHHHHHHhCC-CCCcH-Hh-------HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006997 485 RFDLALKTIHEMP-VEVQA-QV-------WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEA 555 (622)
Q Consensus 485 ~~~~A~~~~~~~~-~~~~~-~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (622)
++++|++.|++.. ..|+. .. ++.....+...|++++|+..++++++++|++...+..++.++.+.|++++|
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999875 33331 11 122222334469999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhC
Q 006997 556 ATARGLMDDR 565 (622)
Q Consensus 556 ~~~~~~~~~~ 565 (622)
.+.|++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.7e-19 Score=176.04 Aligned_cols=541 Identities=12% Similarity=0.064 Sum_probs=364.5
Q ss_pred chhHHHHHHHHHhCCCCCCcccHHHHHHHhh--ccCChhhHHHHHHHHHHhc--CCCCchhHHHHHHHhhcCCChhHHHH
Q 006997 11 FEETLSTYSSMLQTGVHGNSFTFPLVLKACA--NINSIWDGKRVHSHVLKVG--FQQDAFVQTGLIDMYSKCSDFVSSRK 86 (622)
Q Consensus 11 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 86 (622)
.+.|...|....+. .|+. ....+.++|. ..+++..|..+|..++... .+||+.+ .+-..+.+.|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~--sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ--SPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhh--CCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 46777777777663 2222 2444555554 5568888888888866554 3444433 23345567788888888
Q ss_pred HhccCCCCCC-CcchHHHHHHHHHhCCC---chHHHHHHHHHHHcCCCCChhhHHHHHhhhh-----hhhhHHHHHHHHH
Q 006997 87 VLDEMPVRLR-SVVSWNSIISAHSRACL---NDEAILVLKEMWVLGLELSASTFVSVVSGCS-----FRQGISMHCCVYK 157 (622)
Q Consensus 87 ~~~~~~~~~~-~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-----~~~~~~~~~~~~~ 157 (622)
.|+...+..| ++.++-.|...-....+ +..++.++...-. ..|+.......+.... ...+..+...++.
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~--~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYK--ENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh--hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 8887774422 33333333333233333 3444444444433 2233222333333322 5556666666555
Q ss_pred hCCCC-CChhhHhHHHHHHHhcCChHHHHHHHhhcCC--CC--cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh
Q 006997 158 LGLLN-NEIPLANSVMSMYAKFGKVNEARSIFDEIGE--TS--IVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLV 232 (622)
Q Consensus 158 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 232 (622)
..... --...+--+.++|...|++++|...|-+..+ ++ +..+--+...+.+.|+++.+...|+..... .+-+..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~e 377 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYE 377 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHH
Confidence 44211 0233456788999999999999999987765 22 345666788999999999999999998875 234466
Q ss_pred HHHHHHHHHhccC----ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhc--------CCCCHHHH
Q 006997 233 VFLNLILGCAQVG----NLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAV--------LEKSVFLW 300 (622)
Q Consensus 233 ~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~ 300 (622)
|...|...|+..+ ..+.|..++....+.. +.|...|-.+...|-...-+. ++.+|..+ ....+...
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7777777777664 4566777777766654 667777777777766554433 25544433 23467788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHH
Q 006997 301 TSMIGGYAQLGYPSEAVNLFKRLLKT---SVRPNE------ATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQT 371 (622)
Q Consensus 301 ~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (622)
|.+...+...|++.+|...|...... ...++. .+-..+....-..++.+.|.+.|..+.+.. |.-+..|-
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHH
Confidence 99999999999999999999887654 122333 223345556667788999999999988764 22233344
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhc--
Q 006997 372 SLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSH-- 446 (622)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-- 446 (622)
.++.+-...+...+|...+..+.. .++..+..+...+.+...+..|.+-|..+.+.....+|..+...|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 444333344677888888887763 567778878888888888988988887777634445677777777776543
Q ss_pred ----------cCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHH
Q 006997 447 ----------SGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACM 513 (622)
Q Consensus 447 ----------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 513 (622)
.+..++|+++|.++++. .| |...-+-+.-+++..|++.+|..+|.++. ......+|..++.+|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~---dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRN---DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhc---CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 23467788888887742 44 67777778888999999999999999886 3345678999999999
Q ss_pred hcCCHHHHHHHHHHHHcc--CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 514 KHHNVELGEYAAKNLLTL--NPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
..|++-.|+++|+..+.. ..+++.+...|+.++.+.|++.+|.+........
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999998873 3457788999999999999999999988877653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=3.5e-20 Score=183.65 Aligned_cols=266 Identities=15% Similarity=0.147 Sum_probs=177.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPN---EATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIH 375 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (622)
++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|..+++.+.+.. +.+..+++.++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444444444444444444443221111 1233344444444455555555544444332 233444445555
Q ss_pred HHHhcCChHHHHHHhccCCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhc
Q 006997 376 MFSKCGRINKAKEVFERVPDKD--------LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSH 446 (622)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~ 446 (622)
++.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+.+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALA---ADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---HCcCCHHHHHHHHHHHHH
Confidence 5555555555555555443211 11344566777888999999999999887 4455 4577778888999
Q ss_pred cCchHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006997 447 SGMVDDGLSFFKSMQSNFGIEPS--IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVELGEY 523 (622)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 523 (622)
.|++++|.++++++... .|+ ...+..++.+|...|++++|.+.++++. ..|+...+..++..+.+.|++++|..
T Consensus 227 ~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 227 QGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred CCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999998854 443 4567888899999999999999999876 56776777888999999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHh---cCChHHHHHHHHHhhhCCCccCCC
Q 006997 524 AAKNLLTLNPGSTGNYILMANLFTS---AGMWKEAATARGLMDDRRLTKEPG 572 (622)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 572 (622)
.++++++..|+++. +..+...+.. .|+.+++..+++++.+++++++|.
T Consensus 304 ~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 304 LLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999997664 4444444443 569999999999999999988885
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.7e-18 Score=168.31 Aligned_cols=508 Identities=12% Similarity=0.075 Sum_probs=370.5
Q ss_pred ChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC----CCCcchHHHHHHHHHhCCCchHHHHH
Q 006997 45 SIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR----LRSVVSWNSIISAHSRACLNDEAILV 120 (622)
Q Consensus 45 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~ 120 (622)
+.+.|.+.|..+++.. ++|.-..-.-.......+++..|+.+|+..... ++|+. -.+..++.+.|+.+.|+..
T Consensus 145 ~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred cHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 3688999999988875 455444333333344568999999999985433 33432 2233566788999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHhhhh--------hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcC
Q 006997 121 LKEMWVLGLELSASTFVSVVSGCS--------FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIG 192 (622)
Q Consensus 121 ~~~m~~~~~~p~~~t~~~ll~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 192 (622)
|.+..+. .|+...-...|..+. ...+.+++...... .+.++.+.+.|.+.|...|++..+..+...+.
T Consensus 222 ~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999874 443322222222222 44455555554443 34478888999999999999999999988876
Q ss_pred CCC------cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 006997 193 ETS------IVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVV--FLNLILGCAQVGNLFLALSMHSLLLKSGYNN 264 (622)
Q Consensus 193 ~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (622)
..+ ..+|..+.++|-..|++++|...|.+..+. .||.++ +.-+.+.+...|+++.+...|+.+.+.. |.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~ 374 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PN 374 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cc
Confidence 532 245888999999999999999999887764 455544 4467788999999999999999998875 77
Q ss_pred CchhHHHHHHHHHhcC----CHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHH
Q 006997 265 EDPLDNLLVSMYTKCG----DLELARRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLL----KTSVRPNEA 333 (622)
Q Consensus 265 ~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~ 333 (622)
+..+...|...|...+ ..+.|..++.....+ |+.+|-.+...+-...- ..++..|.... ..+-.+...
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 7788888888888775 567777777776554 56677777777655444 44477776544 455567888
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHc---CCCCch------hHHHHHHHHHHhcCChHHHHHHhccCCCCCh---hHH
Q 006997 334 TLATTLSACAELGSLSKGKEIEEYIVLN---GLESNR------QVQTSLIHMFSKCGRINKAKEVFERVPDKDL---AVW 401 (622)
Q Consensus 334 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~ 401 (622)
..+.+...+...|+++.|...|+.+... ...++. .+--.+..++-..++++.|.+.|..+.+..+ ..|
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 9999999999999999999999988665 112222 2233356666777899999999999886433 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 006997 402 SAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLG 481 (622)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 481 (622)
.-+.......++..+|...+..... ....++..+..+...+.+...+..|.+-|+.+.++....+|+.+.-+|.+.|.
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3333233345778899999999886 23334455555677888888888888877777665344567777777777654
Q ss_pred h------------cCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 482 R------------AGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 482 ~------------~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
+ .+..++|+++|.++. .+.+..+-+.++-.+...|++..|..+|.++.+--.+.+++|.+++.+|.
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 2 346788999998876 34456666778888889999999999999999977778999999999999
Q ss_pred hcCChHHHHHHHHHhhhC
Q 006997 548 SAGMWKEAATARGLMDDR 565 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~ 565 (622)
.+|+|-.|.+.|+...+.
T Consensus 692 e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.2e-18 Score=180.66 Aligned_cols=367 Identities=9% Similarity=0.031 Sum_probs=284.9
Q ss_pred HhcCChHHHHHHHhhcCC------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHH
Q 006997 176 AKFGKVNEARSIFDEIGE------TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFL 249 (622)
Q Consensus 176 ~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 249 (622)
.+..+++.-.-.|...++ .+......++..+.+.|++++|..+++........+ ...+..++.++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 355666666666666554 123345567788899999999999999988764333 3445556667778999999
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006997 250 ALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE--K-SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT 326 (622)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 326 (622)
|...++.+.+.. |.+...+..+...+...|++++|...++++.. | +...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999999875 66777888899999999999999999998854 3 5678888999999999999999999988776
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHH
Q 006997 327 SVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSA 403 (622)
Q Consensus 327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 403 (622)
...+ ...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4332 2233233 34778899999999999987765334444555567788899999999999998764 35567788
Q ss_pred HHHHHHHcCCHHH----HHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 006997 404 MINGYAIHGMGDQ----ALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLV 477 (622)
Q Consensus 404 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 477 (622)
+...+...|++++ |...|+++.+ ..|+ ...+..+...+...|++++|...++++... .| +...+..+.
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La 325 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 8899999999985 8999999988 6676 567888899999999999999999998854 55 466677888
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006997 478 DLLGRAGRFDLALKTIHEMP-VEVQAQV-WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEA 555 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (622)
.+|.+.|++++|++.++++. ..|+... +..+..++...|+.++|...|+++++..|++. ..++++|
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea 393 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEG 393 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHH
Confidence 99999999999999999887 5566433 44456778899999999999999999999764 2344455
Q ss_pred HHHHHHhhh
Q 006997 556 ATARGLMDD 564 (622)
Q Consensus 556 ~~~~~~~~~ 564 (622)
...+....+
T Consensus 394 ~~~~~~~~~ 402 (656)
T PRK15174 394 LLALDGQIS 402 (656)
T ss_pred HHHHHHHHH
Confidence 555555544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=2.4e-18 Score=182.48 Aligned_cols=394 Identities=11% Similarity=0.045 Sum_probs=294.4
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILG 240 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 240 (622)
+.....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.+++++..... +.+......+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444556667778888999999999988764 233458888899999999999999999987752 3345566677788
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHH
Q 006997 241 CAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAV 317 (622)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 317 (622)
+...|++++|...++++.+.. +.+.. +..+..++...|+.++|...++++.+. +...+..+...+...+..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 889999999999999998874 55556 888888999999999999999888543 5566677888888889999999
Q ss_pred HHHHHHHhCCCCCCH------HHHHHHHHHHh-----ccCCh---HHHHHHHHHHHHc-CCCCchh-HH-HH---HHHHH
Q 006997 318 NLFKRLLKTSVRPNE------ATLATTLSACA-----ELGSL---SKGKEIEEYIVLN-GLESNRQ-VQ-TS---LIHMF 377 (622)
Q Consensus 318 ~~~~~m~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~-~~---l~~~~ 377 (622)
+.+++... .|+. .....++.... ..+++ +.|.+.++.+.+. ...|+.. .+ .. .+..+
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence 98886654 2321 01112222221 12233 6677788887754 2222221 11 11 12344
Q ss_pred HhcCChHHHHHHhccCCCCC---hh-HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHhccC
Q 006997 378 SKCGRINKAKEVFERVPDKD---LA-VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-----AVVYTSILSACSHSG 448 (622)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g 448 (622)
...|++++|...|+.+.+.+ +. ....+..+|...|++++|+..|+++.+ ..|. ......+..++...|
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~---~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY---HPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh---cCCCCCCCChHHHHHHHHHHHhcc
Confidence 57799999999999988532 21 222256789999999999999999876 3332 234666777889999
Q ss_pred chHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHH
Q 006997 449 MVDDGLSFFKSMQSNFG----------IEPS---IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACM 513 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 513 (622)
++++|.+.++.+.+... -.|+ ...+..++..+...|++++|++.++++. .+.+...+..++..+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999885410 0122 2345567788999999999999999986 4445778899999999
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 514 KHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
..|++++|++.++++++++|+++..+..++.++.+.|++++|..+++.+++..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1e-17 Score=177.68 Aligned_cols=367 Identities=10% Similarity=0.006 Sum_probs=245.1
Q ss_pred hHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 006997 167 LANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ 243 (622)
Q Consensus 167 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (622)
.+..+...+...|++++|..+|++..+ .+...+..+...+...|++++|+..+++..+.. +.+.. +..+...+..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHH
Confidence 345555555666666666666665432 233445555566666666666666666666541 22333 5555666666
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHH--------HHHHHHHHHH-----hc
Q 006997 244 VGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVF--------LWTSMIGGYA-----QL 310 (622)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~-----~~ 310 (622)
.|+.++|...++++.+.. |.+...+..+..++...+..+.|.+.++.... ++. ....++.... ..
T Consensus 129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 677777777777666654 44455555566667777777777777776654 211 1122222221 12
Q ss_pred CCh---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006997 311 GYP---SEAVNLFKRLLKT-SVRPNEA-TLA----TTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCG 381 (622)
Q Consensus 311 ~~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (622)
+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++|...|+.+.+.+.+........+...|...|
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 233 6788888888754 2223221 111 113345667899999999999887753211122233577899999
Q ss_pred ChHHHHHHhccCCCCC-------hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC-----------CCCCH---HHHHHH
Q 006997 382 RINKAKEVFERVPDKD-------LAVWSAMINGYAIHGMGDQALNLFYKMQHVEG-----------LKPDA---VVYTSI 440 (622)
Q Consensus 382 ~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~p~~---~~~~~l 440 (622)
++++|...|+++.+.+ ......+..++...|++++|.+.++.+.+ .. -.|+. ..+..+
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~-~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN-NSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh-cCCceEeecCCCCCCCCchHHHHHHHH
Confidence 9999999998876422 12455566678899999999999999887 21 11232 245567
Q ss_pred HHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCH
Q 006997 441 LSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNV 518 (622)
Q Consensus 441 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~ 518 (622)
...+...|+.++|++.++++... .+.+...+..++..+...|++++|++.++++. ..|+ ...+..++..+...|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 77888999999999999999854 23467888899999999999999999999987 4555 66777788888999999
Q ss_pred HHHHHHHHHHHccCCCCCchHH
Q 006997 519 ELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
++|+.+++++++..|+++.+..
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999998885544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.5e-18 Score=179.19 Aligned_cols=419 Identities=11% Similarity=-0.006 Sum_probs=291.9
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhh
Q 006997 68 QTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQ 147 (622)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 147 (622)
+......|.+.|+++.|+..|+......|+...|..+..+|...|++++|++.++...+. .|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~--------------- 192 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPD--------------- 192 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCC---------------
Confidence 345667788889999999999988766777888889999999999999999999998763 333
Q ss_pred hHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCC---cchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006997 148 GISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETS---IVSWTTIIGGYVNVGNVNEAFGLCNQMRR 224 (622)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 224 (622)
+..++..+..+|...|++++|...|......+ ......++..+.. ..+........+
T Consensus 193 ----------------~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~ 252 (615)
T TIGR00990 193 ----------------YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILE 252 (615)
T ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 66677888889999999999988876543211 1111111111111 122222222222
Q ss_pred CCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc-hhHHHHHHH---HHhcCCHHHHHHHHhhcCCC-----
Q 006997 225 MSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNED-PLDNLLVSM---YTKCGDLELARRVFDAVLEK----- 295 (622)
Q Consensus 225 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~----- 295 (622)
.. +++...+..+.. +...........-+....+ ..+.. ..+..+... ....+++++|.+.|+.....
T Consensus 253 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 253 TK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred cC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 21 122222222211 1111111111111111111 11111 111111111 12346889999999887542
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 006997 296 -SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPN-EATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSL 373 (622)
Q Consensus 296 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (622)
....|+.+...+...|++++|+..|++.++. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l 405 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHR 405 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3467888888999999999999999999876 344 5577888888899999999999999998775 5567888999
Q ss_pred HHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCc
Q 006997 374 IHMFSKCGRINKAKEVFERVPD--K-DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGM 449 (622)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 449 (622)
..++...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|+
T Consensus 406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccC
Confidence 9999999999999999998864 3 456777788899999999999999999987 5565 6788889999999999
Q ss_pred hHHHHHHHHHhHHhcCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHH
Q 006997 450 VDDGLSFFKSMQSNFGIEPSI-E-------HYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~ 519 (622)
+++|+..|++.... .|+. . .++.....+...|++++|.+++++.. ..|+ ...+..++..+...|+++
T Consensus 483 ~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 483 FDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred HHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 99999999998843 4431 1 11222233445799999999999865 4454 557889999999999999
Q ss_pred HHHHHHHHHHccCCCCC
Q 006997 520 LGEYAAKNLLTLNPGST 536 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~ 536 (622)
+|+..|++++++.+...
T Consensus 560 eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 560 EALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHHhccHH
Confidence 99999999999887543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.5e-18 Score=179.88 Aligned_cols=352 Identities=11% Similarity=-0.002 Sum_probs=279.8
Q ss_pred HcCCChhHHHHHHHHHHHC--CCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHH
Q 006997 207 VNVGNVNEAFGLCNQMRRM--SVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLEL 284 (622)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (622)
.++.+++.---+|....++ .-.-+..-...++..+.+.|+++.|..++...+... +.+......++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 4455555444444433221 011233345566778889999999999999998876 4455566666677788999999
Q ss_pred HHHHHhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 006997 285 ARRVFDAVLE--K-SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLN 361 (622)
Q Consensus 285 a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (622)
|...|+++.. | +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999854 3 56788889999999999999999999998863 335567778888999999999999999988776
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHH
Q 006997 362 GLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVV 436 (622)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~ 436 (622)
.. .+...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+ ..|+ ...
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~---~~p~~~~~ 248 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA---RGLDGAAL 248 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHH
Confidence 53 333344333 3478899999999999987643 233445556788899999999999999998 5565 567
Q ss_pred HHHHHHHHhccCchHH----HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHH
Q 006997 437 YTSILSACSHSGMVDD----GLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLL 509 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~ 509 (622)
+..+...+...|++++ |...|+++... .| +...+..+...+.+.|++++|+..++++. ..|+ ...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7888999999999986 89999999843 55 57788899999999999999999999986 4444 66788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLT 568 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (622)
.++...|++++|+..++++++..|+++..+..++.++...|++++|...|++..+..++
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999988877777899999999999999999999876554
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.5e-19 Score=176.47 Aligned_cols=283 Identities=16% Similarity=0.141 Sum_probs=149.5
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---chhHHHHHHHHHhcCCHH
Q 006997 207 VNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNE---DPLDNLLVSMYTKCGDLE 283 (622)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 283 (622)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444555554444431 11223444444444455555555555544444321111 123445555555556666
Q ss_pred HHHHHHhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHH
Q 006997 284 LARRVFDAVLE---KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNE----ATLATTLSACAELGSLSKGKEIEE 356 (622)
Q Consensus 284 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~ 356 (622)
+|..+|+++.+ .+..+++.++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...++
T Consensus 125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66665555543 23445555666666666666666666666554322211 123344445555666666666666
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC--hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC
Q 006997 357 YIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KD--LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP 432 (622)
Q Consensus 357 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 432 (622)
++.+.. +.+...+..+...|.+.|++++|.+.|+++.. |+ ..+++.++.+|...|++++|...++++.+ ..|
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p 280 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYP 280 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCC
Confidence 665543 23344555556666666666666666666553 22 23455566666666666666666666665 345
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhCC
Q 006997 433 DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR---AGRFDLALKTIHEMP 497 (622)
Q Consensus 433 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 497 (622)
+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 5555555666666666666666666666533 5665566655555443 345666666666553
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=2.3e-16 Score=163.93 Aligned_cols=437 Identities=10% Similarity=0.004 Sum_probs=279.1
Q ss_pred hhccCChhhHHHHHHHHHHhcCCCCc--hhHHHHHHHhhcCCChhHHHHHhccCCCCCCCc-chHHHH--HHHHHhCCCc
Q 006997 40 CANINSIWDGKRVHSHVLKVGFQQDA--FVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSV-VSWNSI--ISAHSRACLN 114 (622)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~l--i~~~~~~~~~ 114 (622)
..+.|++..|...|+++.+.. |+. .++ .++..+...|+.++|+..+++.. .|+. ..+..+ ...+...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCH
Confidence 346677777777777777664 332 233 66677777777777777777776 3432 233333 3456666777
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC-
Q 006997 115 DEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE- 193 (622)
Q Consensus 115 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 193 (622)
++|+++|+++.+. .|+ ++.++..++..|...++.++|++.++++..
T Consensus 119 d~Aiely~kaL~~--dP~-------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 119 DQALALWQSSLKK--DPT-------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHHHHHHhh--CCC-------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 7777777777663 232 555566667777777777777777777765
Q ss_pred -CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHH
Q 006997 194 -TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLL 272 (622)
Q Consensus 194 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (622)
|+...+..++..+...++..+|++.++++.+.. +-+...+..+.....+.|-...|.++..+ .|+..+-...
T Consensus 166 dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~ 238 (822)
T PRK14574 166 DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHY 238 (822)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHH
Confidence 332333223233333445545777777776652 22344555666666666666666655443 2221111110
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhC-CCCCCHH-----HHHHHHHHHh
Q 006997 273 VSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLG---YPSEAVNLFKRLLKT-SVRPNEA-----TLATTLSACA 343 (622)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~-~~~~~~~-----~~~~ll~~~~ 343 (622)
.. =+.+.|.+..+....++. .... -.+.|+.-++.+... +..|... ...-.+-++.
T Consensus 239 ~~-----l~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 239 RQ-----LERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HH-----HHHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 00 011122222211111100 0011 234555556665542 1123221 2223455677
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---------ChhHHHHHHHHHHHcCCH
Q 006997 344 ELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK---------DLAVWSAMINGYAIHGMG 414 (622)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~ 414 (622)
..++..++.+.++.+...+.+....+-.++.++|...+++++|..+|..+..+ +......|.-+|...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 78888888888888888876666677888888999999999999998877532 222346678888899999
Q ss_pred HHHHHHHHHhHHhcCC-----------CCC--H-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006997 415 DQALNLFYKMQHVEGL-----------KPD--A-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLL 480 (622)
Q Consensus 415 ~~a~~~~~~~~~~~~~-----------~p~--~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 480 (622)
++|..+++++.+ ..- .|| - ..+..++..+...|+..+|++.++++... -+-|......+.+.+
T Consensus 384 ~~A~~~l~~~~~-~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 384 DKAYQFAVNYSE-QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIY 460 (822)
T ss_pred HHHHHHHHHHHh-cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999886 211 122 2 23455667788999999999999999854 244788899999999
Q ss_pred HhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 006997 481 GRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 481 ~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 539 (622)
...|++.+|++.++.+. ..|+ .......+.++...+++.+|..+.+++++..|+++.+.
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999998876 4555 55677788888899999999999999999999988654
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=7e-16 Score=160.31 Aligned_cols=195 Identities=14% Similarity=0.094 Sum_probs=158.9
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC----CCCCHHHHHHHHHHH
Q 006997 373 LIHMFSKCGRINKAKEVFERVPDKD----LAVWSAMINGYAIHGMGDQALNLFYKMQHVEG----LKPDAVVYTSILSAC 444 (622)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~ll~~~ 444 (622)
.+-++...|++.++++.|+.+..+. ..+-..+.++|...+++++|+.+++.+....+ ..++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3456778999999999999998532 23556688999999999999999999876221 122334457889999
Q ss_pred hccCchHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHH
Q 006997 445 SHSGMVDDGLSFFKSMQSNFG----------IEPS---IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLL 509 (622)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 509 (622)
...+++++|..+++.+.+... -.|+ ...+..++..+...|+..+|++.++++. .+-|...+..+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999986311 0122 2334456788899999999999999987 455688889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
..+...|.+.+|++.++.+..++|++..+....+.++...|+|++|..+.+++.+..+
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999988866433
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.6e-15 Score=136.79 Aligned_cols=432 Identities=13% Similarity=0.112 Sum_probs=277.9
Q ss_pred hcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhh--ccCChhhH-HHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhH
Q 006997 7 NNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACA--NINSIWDG-KRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVS 83 (622)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (622)
.+|..+++.-+|+.|.+.|+..++..-..|++.-+ ...++.-+ ++.|-.|...| +.+..+| +.|++.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH
Confidence 45667777777777777777766666555554333 22233322 23344444444 2233333 3344443
Q ss_pred HHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCC
Q 006997 84 SRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNN 163 (622)
Q Consensus 84 A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 163 (622)
++-+.. +....+|..||.++++-...+.|.++|++-.....+.+..+||.+|.+..+...+++..+|+.....|
T Consensus 198 ---L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~P- 271 (625)
T KOG4422|consen 198 ---LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTP- 271 (625)
T ss_pred ---HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCC-
Confidence 344444 46778999999999999999999999999999888999999999999888777788888888888888
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ 243 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (622)
|..++|+++....+.|+++.|. ..|++++.+|++-|+.|...+|..+|..+++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 7777777777777777776663 3456677788888888888888888888877
Q ss_pred cCChHH-HHHHHHHHHH----hCCCC----CchhHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------CHHHHHHH
Q 006997 244 VGNLFL-ALSMHSLLLK----SGYNN----EDPLDNLLVSMYTKCGDLELARRVFDAVLEK-----------SVFLWTSM 303 (622)
Q Consensus 244 ~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l 303 (622)
.++..+ +..++.++.. ..++| |...+..-+..|.+..+.+.|.++-.-+... ...-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 776644 3444444433 22222 3344556667777777777777665544221 12345667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 006997 304 IGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRI 383 (622)
Q Consensus 304 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (622)
....|+....+.-+..|+.|.-.-+-|+..+...++++....+.++-..++|..++..|...+.....-++..+++.+
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k-- 482 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK-- 482 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC--
Confidence 777888888999999999999888889999999999999999999999999999988875544433333333333221
Q ss_pred HHHHHHhccCCCCChh---HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHh
Q 006997 384 NKAKEVFERVPDKDLA---VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSM 460 (622)
Q Consensus 384 ~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 460 (622)
..|+.. -+.....-++ ..-.+.....-.++.+ ..-.....+.++-.+.+.|..++|.+++..+
T Consensus 483 ----------~hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 483 ----------LHPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred ----------CCCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 012211 1111111110 1111112222233333 3333455666667777888888888888887
Q ss_pred HHhcCCCCChhHHHHH---HHHHHhcCChHHHHHHHHhC
Q 006997 461 QSNFGIEPSIEHYLCL---VDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 461 ~~~~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~ 496 (622)
.++++--|-....+++ ++.-.+.++.-.|...++-+
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6654545555555543 34444555566666666555
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=1e-13 Score=132.01 Aligned_cols=443 Identities=14% Similarity=0.103 Sum_probs=340.1
Q ss_pred HHHHHHHHHHHcCCCCChh-hHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC-
Q 006997 116 EAILVLKEMWVLGLELSAS-TFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE- 193 (622)
Q Consensus 116 ~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 193 (622)
.=.++++..++. .|++. .|-..+..-....++-++....+.-... .-|--+|.+..-++.|.++++...+
T Consensus 364 ~K~RVlRKALe~--iP~sv~LWKaAVelE~~~darilL~rAveccp~s------~dLwlAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 364 NKKRVLRKALEH--IPRSVRLWKAAVELEEPEDARILLERAVECCPQS------MDLWLALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHHHh--CCchHHHHHHHHhccChHHHHHHHHHHHHhccch------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555555553 34433 3333332222455777777776654333 4455667777788889988887765
Q ss_pred --CCcchHHHHHHHHHcCCChhHHHHHHHH----HHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--
Q 006997 194 --TSIVSWTTIIGGYVNVGNVNEAFGLCNQ----MRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNE-- 265 (622)
Q Consensus 194 --~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 265 (622)
.+...|-+-...--.+|+.+...+++.+ +...|+..+..-|..=...|-..|..-.+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 4666777766667778898888887765 45568888988888888899999999999999999988886543
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006997 266 DPLDNLLVSMYTKCGDLELARRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSAC 342 (622)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 342 (622)
..+|..-...|.+.+.++-|..+|....+- +...|...+..--..|..+....+|++....- +-....|......+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 457788888899999999999999887643 55778887777777899999999999998863 23444555555666
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHHHHHcCCHHHHHHH
Q 006997 343 AELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KDLAVWSAMINGYAIHGMGDQALNL 420 (622)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 420 (622)
-..|+...|..++..+.+.. +.+..++-+-+.......+++.|..+|.+... ++...|..-+...-..++.++|+++
T Consensus 595 w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 77899999999999998876 45788888889999999999999999988764 6667777777777778899999999
Q ss_pred HHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 006997 421 FYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-- 497 (622)
Q Consensus 421 ~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 497 (622)
+++..+ ..|+. ..|..+.+.+-+.++.+.|...|..-.+ ..+..+..|-.|.+.=.+.|++-.|..++++..
T Consensus 674 lEe~lk---~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 674 LEEALK---SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHH---hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999888 77885 5678888899999999999999987663 234457778888888888999999999999876
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------------------------------CCchHHHHHHHHH
Q 006997 498 VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG------------------------------STGNYILMANLFT 547 (622)
Q Consensus 498 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------------------------~~~~~~~l~~~~~ 547 (622)
.+.+...|...+..-.+.|+.+.|..+..++++-.|+ |+.+....+.++.
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 5556788999999999999999999999888876665 3567778888888
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCCceE
Q 006997 548 SAGMWKEAATARGLMDDRRLTKEPGWSQ 575 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 575 (622)
...++++|++.|.+..+.+. +.|-.|
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~--d~GD~w 854 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDP--DNGDAW 854 (913)
T ss_pred HHHHHHHHHHHHHHHHccCC--ccchHH
Confidence 89999999999998887554 344444
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=2.5e-14 Score=141.36 Aligned_cols=557 Identities=12% Similarity=0.089 Sum_probs=347.6
Q ss_pred cCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHH
Q 006997 8 NGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKV 87 (622)
Q Consensus 8 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (622)
.|+.++|.+++.+.++.. +.+...|.+|...|-..|+.+.+...+-.+.... +.|...|-.+.......|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 499999999999999864 3356689999999999999998877665544443 56778899999999999999999999
Q ss_pred hccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh--------hhhhHHHHHHHHHh
Q 006997 88 LDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS--------FRQGISMHCCVYKL 158 (622)
Q Consensus 88 ~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--------~~~~~~~~~~~~~~ 158 (622)
|.+..+. +++...+---+..|-+.|+...|.+.|.++.+.....|..-+..++.... .+.+.+.+......
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9998865 45544455556778899999999999999988654334444444444433 34444555555443
Q ss_pred CCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC----C----------------------CcchHH----HHHHHHHc
Q 006997 159 GLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE----T----------------------SIVSWT----TIIGGYVN 208 (622)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~----~li~~~~~ 208 (622)
+....+...++.++..|.+...++.|......... + +..+|+ -++-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 33333566677888888888888888777654432 1 111121 22233444
Q ss_pred CCChhHHHHHHHHHHHCCC--CCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHH
Q 006997 209 VGNVNEAFGLCNQMRRMSV--TPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELAR 286 (622)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 286 (622)
.+..+....+.....+..+ .-+...|..+..++...|.+.+|..++..+.......+..+|-.+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444445555555553 33456788888889999999999999998888765666778888888999999999999
Q ss_pred HHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 006997 287 RVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLK--------TSVRPNEATLATTLSACAELGSLSKGKEIE 355 (622)
Q Consensus 287 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 355 (622)
+.|..+... +....-.|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.++-..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 998887543 345555667778888999999988888642 223444444555556677778877765555
Q ss_pred HHHHHcC-----CCC-----------------chhHHHHHHHHHHhcCChHHHHHHhccCC--------C---CCh-hHH
Q 006997 356 EYIVLNG-----LES-----------------NRQVQTSLIHMFSKCGRINKAKEVFERVP--------D---KDL-AVW 401 (622)
Q Consensus 356 ~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~---~~~-~~~ 401 (622)
..++... +-| .......++.+-.+.++.....+-...-. . .|. ..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 5444211 001 11111122222222222221111111110 0 011 133
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH---H-HHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC---hhHHH
Q 006997 402 SAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV---V-YTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS---IEHYL 474 (622)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~ 474 (622)
.-++.++++.+++++|+.+...+....-+.-+.. . -...+.++...+++..|...++.+...++...+ ...|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4566678888999999999888876222222332 2 234455677888999999888888765443332 23344
Q ss_pred HHHHHHHh-----------------------------------cCChHHHHHHHHhCC-CCCcHHhHHH-HHHHHH----
Q 006997 475 CLVDLLGR-----------------------------------AGRFDLALKTIHEMP-VEVQAQVWAP-LLSACM---- 513 (622)
Q Consensus 475 ~l~~~~~~-----------------------------------~g~~~~A~~~~~~~~-~~~~~~~~~~-l~~~~~---- 513 (622)
...+.+.+ ++.+.-|+..+-++- ..|+.+..+- ++.++.
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~ 789 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLAL 789 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 22232222 344455555443332 2333222222 111111
Q ss_pred ------hcCCHHHHHHHHHHHHccCC--CCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 514 ------KHHNVELGEYAAKNLLTLNP--GSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 514 ------~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
++-..-.+...+++..++.- +.-.+++++|.+|-..|-..-|..+|++++.-.
T Consensus 790 qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 790 QRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 11123344444444444322 245688999999999999999999999998754
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3e-16 Score=142.49 Aligned_cols=483 Identities=12% Similarity=0.107 Sum_probs=305.0
Q ss_pred chhhcCCchhHHHHHHHHHhCCCCCCcccHHH-HHHHhhccCChhhHHHHHHHHHHhcCCCC----chhHHHHHHHhhcC
Q 006997 4 NSTNNGSFEETLSTYSSMLQTGVHGNSFTFPL-VLKACANINSIWDGKRVHSHVLKVGFQQD----AFVQTGLIDMYSKC 78 (622)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 78 (622)
-|..+....+|+..|+-+.+....|+...... +.+.+.+.+++..|...+...+..-...+ ..+.+.+.-.+.+.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 45566777788888888888777777765443 33566777788888888887776531112 23455555567788
Q ss_pred CChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHh
Q 006997 79 SDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKL 158 (622)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~ 158 (622)
|++++|+.-|+...+..||..+--.|+-++..-|+.++..+.|..|...-..||...|. +.
T Consensus 290 gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi-------------------~~ 350 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI-------------------KE 350 (840)
T ss_pred ccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------------------CC
Confidence 99999999988877666776655455555566788888888888888766666655440 00
Q ss_pred CCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh-HHHHH
Q 006997 159 GLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLV-VFLNL 237 (622)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l 237 (622)
.-+| + ..|+.--.+...+ +.|...+ ..+.++++-.-.++..--+.||-. -|...
T Consensus 351 ~ddp-~----~~ll~eai~nd~l-------k~~ek~~-------------ka~aek~i~ta~kiiapvi~~~fa~g~dwc 405 (840)
T KOG2003|consen 351 KDDP-D----DNLLNEAIKNDHL-------KNMEKEN-------------KADAEKAIITAAKIIAPVIAPDFAAGCDWC 405 (840)
T ss_pred cCCc-c----hHHHHHHHhhHHH-------HHHHHhh-------------hhhHHHHHHHHHHHhccccccchhcccHHH
Confidence 0111 1 1111111111111 1111000 011122222222222222233311 11111
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHH----HHHH-HHHh-cC
Q 006997 238 ILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWT----SMIG-GYAQ-LG 311 (622)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~l~~-~~~~-~~ 311 (622)
+...-.....+.|..+ +| .-..-|.+.|+++.|.++++-..+.|..+-+ .|-. -|.+ ..
T Consensus 406 le~lk~s~~~~la~dl--ei-------------~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 406 LESLKASQHAELAIDL--EI-------------NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred HHHHHHhhhhhhhhhh--hh-------------hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 1111111111111111 00 1122366778888887777766655433222 2211 1222 23
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 006997 312 YPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFE 391 (622)
Q Consensus 312 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (622)
++..|.+.-....... +-+......-.......|++++|.+.++++...+-.-....|| +.-.+-..|++++|++.|-
T Consensus 471 ~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 471 DFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFL 548 (840)
T ss_pred chhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHH
Confidence 4566665555444322 2233333333334456788999999998887765333333333 4445677899999999997
Q ss_pred cCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCC
Q 006997 392 RVP---DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIE 467 (622)
Q Consensus 392 ~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 467 (622)
++. ..+....-.+...|-...++.+|++++-+... +-| |+....-+...|-+.|+-.+|.+.+-+--+ -++
T Consensus 549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp 623 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFP 623 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccC
Confidence 765 35666777778888889999999999988875 555 578889999999999999999998765442 345
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHH-HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 468 PSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSAC-MKHHNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 468 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
.+.++..-|..-|....-+++|+.+|++.. ..|+..-|..++..| ++.|++++|..+|+......|++...+..|..+
T Consensus 624 ~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 624 CNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 588898889999999999999999999987 899999999888776 468999999999999999999999999999999
Q ss_pred HHhcCCh
Q 006997 546 FTSAGMW 552 (622)
Q Consensus 546 ~~~~g~~ 552 (622)
....|-.
T Consensus 704 ~~dlgl~ 710 (840)
T KOG2003|consen 704 AGDLGLK 710 (840)
T ss_pred hccccch
Confidence 8887753
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2e-15 Score=137.13 Aligned_cols=257 Identities=16% Similarity=0.131 Sum_probs=193.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006997 305 GGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATT--LSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGR 382 (622)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (622)
..|.++|+++.|+++++-+.+..-+.-...-+.| +..+..-.++..|.++-+.+...+ ..++.....-...-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 4578999999999999988775433333333322 222223446777777777665443 2233332222333345799
Q ss_pred hHHHHHHhccCCCCChhHHHHHHH---HHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 006997 383 INKAKEVFERVPDKDLAVWSAMIN---GYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKS 459 (622)
Q Consensus 383 ~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 459 (622)
+++|.+.|.+....|...-.++.. .+-..|+.++|+..|-++.. -+..+......+.+.|....+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999999877765554443 46678999999999998875 1334567788899999999999999999988
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 460 MQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEM-P-VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 460 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
..+ -++.|+.+.+.|.+.|-+.|+...|.+..-.- . ++-+..+..=|...|....-.++|+..|+++.-+.|+...
T Consensus 584 ~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 874 24457899999999999999999999886543 3 4556666666777788888889999999999999998888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 538 NYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
....++.++.+.|++.+|.++|+.+.++-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 88888999999999999999999987653
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.76 E-value=1.7e-12 Score=123.80 Aligned_cols=368 Identities=10% Similarity=0.054 Sum_probs=298.1
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMY 276 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (622)
.+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+....+++++...- +.....|-.....+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 57888888888889999999998887764 23344556556555566788899999999888773 56666777777888
Q ss_pred HhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 006997 277 TKCGDLELARRVFDAVLE---KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKE 353 (622)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 353 (622)
...|+...|..++....+ .+...|-+-+.....+.+++.|..+|.+.... .|+...|..-+..---.++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 889999999999887743 35678888888899999999999999988764 5677777666666666789999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 006997 354 IEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--K-DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGL 430 (622)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (622)
++++..+.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.+...--+.|+.-.|..++++..- ..
T Consensus 673 llEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kN 749 (913)
T KOG0495|consen 673 LLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KN 749 (913)
T ss_pred HHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cC
Confidence 998888763 55667888899999999999999999987664 3 456788888888888999999999999886 22
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHH
Q 006997 431 KPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLS 510 (622)
Q Consensus 431 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 510 (622)
+-|...|...++.-.+.|+.+.|..+..++.++ .+.+...|..-|.+..+.++-....+.+++.. .|+..+.....
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHH
Confidence 335678999999999999999999999999875 35567788888888888888888888888774 45566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceEEE
Q 006997 511 ACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQVE 577 (622)
Q Consensus 511 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 577 (622)
.+....+++.|.+-|.+++..+|++.++|..+-..+.+.|.-++-.+++.+.... .+.-|..|..
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 7788889999999999999999999999999999999999999999999988764 3445556644
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.6e-14 Score=125.84 Aligned_cols=320 Identities=13% Similarity=0.088 Sum_probs=212.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh-------hhhhHHHHHHHHHhCCCCCChhhHh
Q 006997 97 SVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS-------FRQGISMHCCVYKLGLLNNEIPLAN 169 (622)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (622)
.+.+=|.|+.. ..+|..+++.-+|+.|.+.|+..+...-..++.... .-.-.+.|-.+.+.|-.. ..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S--~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS--TSSW- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc--cccc-
Confidence 45566777664 557899999999999999998888877777776655 111122333333333222 2222
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHH
Q 006997 170 SVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFL 249 (622)
Q Consensus 170 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 249 (622)
+.|.+.+ ++-+...+...+|.+||.++++--..+.|.+++++......+.+..+||.+|.+..-. .
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 3444433 5555555677899999999999999999999999999888899999999998876433 3
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006997 250 ALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVR 329 (622)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 329 (622)
..+++.+|....+.||..|+|+++.+..+.|+++.|.+ .|++++.+|++.|+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVe 309 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVE 309 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCC
Confidence 38889999999999999999999999999998877653 345566666666666
Q ss_pred CCHHHHHHHHHHHhccCChHHH-HHHHHHHHH----cCC----CCchhHHHHHHHHHHhcCChHHHHHHhccCCC-----
Q 006997 330 PNEATLATTLSACAELGSLSKG-KEIEEYIVL----NGL----ESNRQVQTSLIHMFSKCGRINKAKEVFERVPD----- 395 (622)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 395 (622)
|...+|..+|..+++.++..+. ..+..++.. ..+ +.+...+..-+..+.+..+.+-|.++-.-+..
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 6666666666666665554332 222222221 111 12334445555555566666655555443331
Q ss_pred ---C---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHH
Q 006997 396 ---K---DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQS 462 (622)
Q Consensus 396 ---~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 462 (622)
+ ...-|..+....|+....+.-...|+.|.- .-+-|+..+...++++....|.++-.-++|..++.
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH
Confidence 1 112344555666677777777777777776 66667777777777777777777777777766663
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=2e-14 Score=142.07 Aligned_cols=333 Identities=17% Similarity=0.164 Sum_probs=235.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHhcCChH
Q 006997 238 ILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAV---LEKSVFLWTSMIGGYAQLGYPS 314 (622)
Q Consensus 238 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 314 (622)
.+.....|++++|..++.++++.. +.....|.+|...|-..|+.+++...+-.+ ...|...|..+.....+.|.++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 333344478888888888777775 666777777888888888888877765433 3446677887877778888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHH----HHHHHHhcCChHHHHHHh
Q 006997 315 EAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTS----LIHMFSKCGRINKAKEVF 390 (622)
Q Consensus 315 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~ 390 (622)
+|.-.|.+.++.. +++...+..-...|-+.|+...|...+.++.....+.+..-... .++.|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8888888877764 33444445556667777888888888887777654434333332 344455566667777777
Q ss_pred ccCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC---------------------------CHHHHH
Q 006997 391 ERVPD-----KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP---------------------------DAVVYT 438 (622)
Q Consensus 391 ~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---------------------------~~~~~~ 438 (622)
+.... -+...++.++..|.+..+++.|......+.. ....+ +... .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~-r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN-RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc-cccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 66553 2345677778888888888888777766654 22222 2212 1
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-C--CcHHhHHHHHHHHH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEP--SIEHYLCLVDLLGRAGRFDLALKTIHEMPV-E--VQAQVWAPLLSACM 513 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~l~~~~~ 513 (622)
.+.-++.+....+....+..-.... .+.| +...|.-+.++|...|++.+|+.++..+.. + .+...|..++.+|.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1222333333333333333333333 5444 578889999999999999999999999872 2 23668999999999
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceE
Q 006997 514 KHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQ 575 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 575 (622)
..|..+.|.+.|++++.+.|++..+...|+.+|.++|+.++|.++++.+...+.+..+++.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999999998777666677666
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.8e-13 Score=123.29 Aligned_cols=459 Identities=14% Similarity=0.112 Sum_probs=312.8
Q ss_pred CCchhHHHHHHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHh
Q 006997 63 QDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVS 141 (622)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 141 (622)
.+...|-.....=..++++..|+++|+..... ..+...|--.+..-.++..+..|..++++.... -|..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRV-------- 140 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRV-------- 140 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchH--------
Confidence 44455555555555677888999999987754 667777888888888999999999999988652 2322
Q ss_pred hhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHcCCChhHHHHHH
Q 006997 142 GCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE--TSIVSWTTIIGGYVNVGNVNEAFGLC 219 (622)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 219 (622)
...|-..+.+=-..|++..|.++|++..+ |+..+|++.|..-.+.+.++.|..++
T Consensus 141 -----------------------dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY 197 (677)
T KOG1915|consen 141 -----------------------DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY 197 (677)
T ss_pred -----------------------HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 22233344444556888888888888765 88888888888888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHh-C-CCCCchhHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 006997 220 NQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKS-G-YNNEDPLDNLLVSMYTKCGDLELARRVFDAVL---- 293 (622)
Q Consensus 220 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---- 293 (622)
+..+- +.|+..+|.-....-.+.|+...+..+|....+. | -..+...+.+....-.++..++.|.-+|+-..
T Consensus 198 erfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 198 ERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88876 4588888887777778888888888888877663 2 11223345555555556677777777775443
Q ss_pred CCC-HHHHHHHHHHHHhcCCh---HHHHH-----HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 006997 294 EKS-VFLWTSMIGGYAQLGYP---SEAVN-----LFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLE 364 (622)
Q Consensus 294 ~~~-~~~~~~l~~~~~~~~~~---~~a~~-----~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (622)
+.. ...|..+..---+-|+- +.++- -|+.+...+ +.|-.+|-..+..-...|+.+...++++.++..-.+
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 222 23333333332333443 33321 234444443 346666666777777778888888888888765422
Q ss_pred Cch-hHHHHHHH--------HHHhcCChHHHHHHhccCCC--C-ChhH----HHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 006997 365 SNR-QVQTSLIH--------MFSKCGRINKAKEVFERVPD--K-DLAV----WSAMINGYAIHGMGDQALNLFYKMQHVE 428 (622)
Q Consensus 365 ~~~-~~~~~l~~--------~~~~~~~~~~A~~~~~~~~~--~-~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (622)
.+. ..+...|- .-....+.+.+.++|+...+ | ...| |.....--.++.+...|.+++....
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--- 431 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--- 431 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---
Confidence 221 11221111 11245677788888866553 1 2233 4334444557788888888888875
Q ss_pred CCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCc----HH
Q 006997 429 GLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQ----AQ 503 (622)
Q Consensus 429 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~ 503 (622)
|.-|...+|...|..-.+.++++.+..+|++.+. ..| +..+|......=...|+.+.|..+|+-+...|. ..
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 4778888888888888888999999999988883 355 567787777777888999999999988775553 44
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH-----hcC-----------ChHHHHHHHHHhhh
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT-----SAG-----------MWKEAATARGLMDD 564 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 564 (622)
.|.+.+..-...|.++.|..+|+++++..+ +..+|...+..-. +.| +...|..+|+....
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 677777777788899999999999998887 4557777776655 445 66678888887654
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=1.5e-17 Score=155.56 Aligned_cols=257 Identities=19% Similarity=0.194 Sum_probs=114.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATL-ATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCG 381 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (622)
+...+.+.|++++|++++++......+|+...| ..+...+...++++.|...++.+...+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 355566777778888777654444323444333 334445566777888888888877665 3356666777766 6888
Q ss_pred ChHHHHHHhccCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 006997 382 RINKAKEVFERVPD--KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKS 459 (622)
Q Consensus 382 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 459 (622)
++++|.+++...-+ +++..+..++..+...++++++..+++++......+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876643 4566777788888999999999999999876233455677888899999999999999999999
Q ss_pred hHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 460 MQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 460 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
+.+. .| +......++..+...|+.+++.++++... .+.++..|..+..++...|+.++|...++++++.+|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9965 66 47788899999999999999888887765 345667889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.+...+++++...|+.++|.++++++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999987754
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=8.8e-13 Score=120.98 Aligned_cols=481 Identities=13% Similarity=0.118 Sum_probs=351.3
Q ss_pred ccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCC-cchHHHHHHHHHhCCCchHHHHH
Q 006997 42 NINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRS-VVSWNSIISAHSRACLNDEAILV 120 (622)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~ 120 (622)
.+++...|..+|+.++... ..+...|...+.+=.++..+..|+.+++.....-|- ...|--.+..--..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3556788999999998776 567888888888889999999999999987655343 34566666666677999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcC--CCCcch
Q 006997 121 LKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIG--ETSIVS 198 (622)
Q Consensus 121 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 198 (622)
|++-.+ ..| +...|.+.|+.=.+-..++.|..++++.. .|++.+
T Consensus 164 ferW~~--w~P--------------------------------~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~ 209 (677)
T KOG1915|consen 164 FERWME--WEP--------------------------------DEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSN 209 (677)
T ss_pred HHHHHc--CCC--------------------------------cHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHH
Confidence 988765 233 56666888888888889999999998865 488888
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--chhHHHH
Q 006997 199 WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDL----VVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNE--DPLDNLL 272 (622)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 272 (622)
|-.....-.++|+...+..+|+...+. -.|. ..|.+....-.+...++.|.-+|.-.++.- |.+ ...|..+
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~ 286 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKY 286 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHH
Confidence 888888888899999999998887664 1222 233333333344567788888888887762 333 4456666
Q ss_pred HHHHHhcCCHHHHHHHH--------hhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-H------H
Q 006997 273 VSMYTKCGDLELARRVF--------DAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNE-A------T 334 (622)
Q Consensus 273 ~~~~~~~~~~~~a~~~~--------~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~------~ 334 (622)
...--+.|+.....+.. +..... |-.+|--.+..-...|+.+...++|++.+.. ++|-. . .
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYI 365 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYI 365 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHH
Confidence 66556667765554432 333333 4456767777777789999999999999886 34422 1 2
Q ss_pred HHHHHHHH---hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH----hcCChHHHHHHhccCCC--CChhHHHHHH
Q 006997 335 LATTLSAC---AELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFS----KCGRINKAKEVFERVPD--KDLAVWSAMI 405 (622)
Q Consensus 335 ~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~--~~~~~~~~l~ 405 (622)
|.-+--+| ....+.+.+.++++..++. +|....++..+--+|+ ++.++..|.+++..... |...++...|
T Consensus 366 YLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YI 444 (677)
T KOG1915|consen 366 YLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHH
Confidence 22222222 3567899999999998883 4666667766655554 68899999999988764 6777888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 006997 406 NGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG 484 (622)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 484 (622)
..-.+.++++.+.+++++..+ ..| |..+|......-...|+.+.|..+|+-+++...+......|.+.|+.=...|
T Consensus 445 elElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~ 521 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEG 521 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcc
Confidence 888999999999999999998 667 4688988888888999999999999998864333334556777888888999
Q ss_pred ChHHHHHHHHhCC-CCCcHHhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHcc----CCCC--CchHHH
Q 006997 485 RFDLALKTIHEMP-VEVQAQVWAPLLSACM-----KHH-----------NVELGEYAAKNLLTL----NPGS--TGNYIL 541 (622)
Q Consensus 485 ~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~ 541 (622)
.+++|..+++++. ..+...+|-++...-. ..+ +...|..+|+.+... .|.. ...+..
T Consensus 522 E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEa 601 (677)
T KOG1915|consen 522 EFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEA 601 (677)
T ss_pred hHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999999987 5666778887766443 334 677899999998762 3321 123334
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhC
Q 006997 542 MANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+-++-...|...+-..+-.+|+++
T Consensus 602 w~~~E~~~G~~~d~~~V~s~mPk~ 625 (677)
T KOG1915|consen 602 WKNMEETFGTEGDVERVQSKMPKK 625 (677)
T ss_pred HHHHHHhcCchhhHHHHHHhccHH
Confidence 444556678888888888877753
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.71 E-value=3.1e-13 Score=133.08 Aligned_cols=534 Identities=10% Similarity=0.012 Sum_probs=310.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCC
Q 006997 16 STYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRL 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 95 (622)
.++-.+...|+.|+.+||..++..||..|+.+.|. +|..|.....+.+..+++.++.+....++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 56788889999999999999999999999999999 9999998888889999999999999988877664 5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHH-HH-------HcCCCCChhhHHHHHhhhh-----------hhhhHHHHHHHH
Q 006997 96 RSVVSWNSIISAHSRACLNDEAILVLKE-MW-------VLGLELSASTFVSVVSGCS-----------FRQGISMHCCVY 156 (622)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~A~~~~~~-m~-------~~~~~p~~~t~~~ll~~~~-----------~~~~~~~~~~~~ 156 (622)
|.+.+|..|..+|.+.||... ++..++ |. ..|+..-..-+...+..|. ....+.+++..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999765 222222 22 2333333333333333333 333445556666
Q ss_pred HhCCCCCChhhHhHH---HHHHHhc-CChHHHHHHHhhcCC-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 006997 157 KLGLLNNEIPLANSV---MSMYAKF-GKVNEARSIFDEIGE-TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDL 231 (622)
Q Consensus 157 ~~~~~~~~~~~~~~l---~~~~~~~-g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 231 (622)
+.+...|...-++.. ++-.... ..+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|.+.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 655322111111111 1111111 223333333333333 88899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC
Q 006997 232 VVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLG 311 (622)
Q Consensus 232 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 311 (622)
+-|..|+-+ .++...++.+++-|...|+.|+..|+...+..+..+|....+.+....-.......+..+..+.....
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 888888876 78888899999999999999999999888877777665333322211111111122222222211111
Q ss_pred Ch-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHhcCCh
Q 006997 312 YP-----SEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNG---LESNRQVQTSLIHMFSKCGRI 383 (622)
Q Consensus 312 ~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 383 (622)
+. .-....+++..-.|+......|.... -...+|.-+..+++...+..-. -+.++..+..++.-|.+.-+.
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 11 11222233322334433333333322 2333666677777666664321 122334444444444332111
Q ss_pred HHHHHHhc--cCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHh---cCCCC-------CHHHHHHHHHHHhccCc
Q 006997 384 NKAKEVFE--RVPDK--DLAVWSAMINGYAIHGMGDQALNLFYKMQHV---EGLKP-------DAVVYTSILSACSHSGM 449 (622)
Q Consensus 384 ~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p-------~~~~~~~ll~~~~~~g~ 449 (622)
.-...++. ..... +......+... ...-+...+++.+...... ....| -...-+.++..|.+.-+
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsel-l~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSEL-LENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHH-HHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 11111110 00000 00000000110 0001111122211111110 01111 11223445555665555
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 006997 450 VDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-----VEVQAQVWAPLLSACMKHHNVELGEYA 524 (622)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~ 524 (622)
..+++..-+..... - .+ ..|..|++.+....+.+.|..+.++.. ..-|..-+..+.....+.+....+..+
T Consensus 475 ~lK~l~~~ekye~~-l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDL-L-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHH-H-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 56665544443321 1 22 678888999999999999999988876 223344556677777788888888888
Q ss_pred HHHHHcc---CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 006997 525 AKNLLTL---NPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTK 569 (622)
Q Consensus 525 ~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (622)
++...+. .|.-......+.+-....|+.+.-.+.++-+...|+.-
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8877653 33334455555566677888888888888777766543
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-12 Score=120.21 Aligned_cols=256 Identities=13% Similarity=0.122 Sum_probs=201.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhc
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLE--SNRQVQTSLIHMFSKC 380 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 380 (622)
+..++....+.+++++-.+.....|.+-+...-+....+.-...++++|+.+|+++.+...- .|..+|+.++-.-..+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34456666677888888888888776555555555555566778899999999998887421 2455666554333222
Q ss_pred CChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHH
Q 006997 381 GRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKS 459 (622)
Q Consensus 381 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 459 (622)
.++.---...-.+.+--+.|..++.+-|.-.++.++|...|++..+ +.|.. ..|+.+.+-|....+...|++-++.
T Consensus 313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2222211222222333455667777888889999999999999998 77874 6788889999999999999999999
Q ss_pred hHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 460 MQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 460 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
++ .+.| |-..|..|.++|.-.+...-|+-+|+++. .+.|...|.+|+.+|.+.++.++|++.|.+++....-+.
T Consensus 390 Av---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 390 AV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 99 4566 78899999999999999999999999987 566788999999999999999999999999999888889
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..+..|+++|.+.++..+|...|++-.+
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998776
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-12 Score=120.10 Aligned_cols=249 Identities=13% Similarity=0.142 Sum_probs=186.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHHH-HHHHcCCCCchhHHHHHHHHHHhcC
Q 006997 305 GGYAQLGYPSEAVNLFKRLLKTSV--RPNEATLATTLSACAELGSLSKGKEIEE-YIVLNGLESNRQVQTSLIHMFSKCG 381 (622)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (622)
.+.-.+.++++|+.+|+++.+... --|..+|..++-.-.....+ .++. ...+.+ +-.+.+...+.+-|+-.+
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~ 344 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNID-KYRPETCCIIANYYSLRS 344 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhc-cCCccceeeehhHHHHHH
Confidence 344456677777777777776531 11445666655443222111 1111 111111 233445566677777788
Q ss_pred ChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHH
Q 006997 382 RINKAKEVFERVPDK---DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFF 457 (622)
Q Consensus 382 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 457 (622)
+.++|...|++..+- ....|+.|..-|...++...|.+.++.+.+ +.| |-..|-.+.++|.-.+.+.-|+-+|
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHH
Confidence 888888888877653 346788899999999999999999999998 777 5678999999999999999999999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc----
Q 006997 458 KSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT---- 530 (622)
Q Consensus 458 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 530 (622)
+++. .+.| |...|.+|.++|.+.++.++|++.|.+.. .+.+...+..|+..+.+.++.++|...|++-++
T Consensus 422 qkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 422 QKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 9988 4466 78999999999999999999999999987 344568899999999999999999999999877
Q ss_pred ---cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 531 ---LNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 531 ---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..|+...+...|+.-+.+.+++++|..+-.....
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 3454555666788899999999999987776654
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=4.2e-13 Score=123.60 Aligned_cols=186 Identities=17% Similarity=0.203 Sum_probs=127.0
Q ss_pred HHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccC
Q 006997 373 LIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSG 448 (622)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 448 (622)
+..+|....+.++-...|++..+ .|+.+|..-...+.-.+++++|..=|++... +.|+ ...|..+.-+..+.+
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS---LDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHHH
Confidence 33344444444444444443332 2334444444445555667777777777776 6665 355666666666777
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc---------HHhHHHHHHHHHhcCCH
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ---------AQVWAPLLSACMKHHNV 518 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---------~~~~~~l~~~~~~~~~~ 518 (622)
.++++...|++.+.+ ++-.+++|+.....+...+++++|.+.|+... .+|+ +.+...++..- =.+|+
T Consensus 443 k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 888888888887765 34457777777888888888888888887764 3333 22222232222 23899
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 519 ELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..|+.+++++++++|....++..|+.+..++|+.++|+++|++...
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998754
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=2.8e-13 Score=132.70 Aligned_cols=275 Identities=10% Similarity=0.062 Sum_probs=182.3
Q ss_pred cCCHHHHHHHHhhcCCC--CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCChHHHHH
Q 006997 279 CGDLELARRVFDAVLEK--SV-FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLA--TTLSACAELGSLSKGKE 353 (622)
Q Consensus 279 ~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 353 (622)
.|+++.|.+.+....+. ++ ..+.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554332 12 22322333446677777777777777654 34433222 22445666777777777
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC---h--------hHHHHHHHHHHHcCCHHHHHHHHH
Q 006997 354 IEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKD---L--------AVWSAMINGYAIHGMGDQALNLFY 422 (622)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~--------~~~~~l~~~~~~~~~~~~a~~~~~ 422 (622)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777776665 4556666777777777777777777776665321 1 123333333344455666667777
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-
Q 006997 423 KMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV- 500 (622)
Q Consensus 423 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 500 (622)
...+ ..+.++.....+..++...|+.++|.+.+++..+. +|+.... ++.+....++.+++++.+++.. ..|
T Consensus 254 ~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 7654 13446677888888888999999999999888743 5555332 2333345588888888888876 344
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 501 QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
|+..+..++..|...+++++|.+.|+++++..|+ ...+..++.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556778888999999999999999999999994 56677899999999999999999987654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6.7e-14 Score=134.16 Aligned_cols=276 Identities=13% Similarity=0.056 Sum_probs=218.5
Q ss_pred CHHHHHHHHhhcCCC--CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 006997 281 DLELARRVFDAVLEK--SV-FLWTSMIGGYAQLGYPSEAVNLFKRLLKTS--VRPNEATLATTLSACAELGSLSKGKEIE 355 (622)
Q Consensus 281 ~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 355 (622)
+..+|...|..++.. |+ -....+..+|...+++++|.++|+.+.+.. ..-+...|.+.+.-+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 457788888775433 32 344567788888899999999998887742 11255677777765432 1222233
Q ss_pred -HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCC
Q 006997 356 -EYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK---DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLK 431 (622)
Q Consensus 356 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 431 (622)
+.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~ 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VD 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CC
Confidence 3344433 667899999999999999999999999998864 446788888888899999999999999876 66
Q ss_pred CCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHH
Q 006997 432 PDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAP 507 (622)
Q Consensus 432 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 507 (622)
|+. ..|..+...|.+.++++.|+-.|+++. .+.| +......+...+.+.|+.++|+++++++. .+.++..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 654 567788889999999999999999998 5677 56667778889999999999999999986 3445555556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
-+..+...++.++|...++++.++.|++..++..++.+|.+.|+.+.|+.-|--+.+-++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 667777889999999999999999999999999999999999999999999998877554
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6e-14 Score=134.49 Aligned_cols=245 Identities=15% Similarity=0.178 Sum_probs=142.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCChHH-HHH
Q 006997 312 YPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGL--ESNRQVQTSLIHMFSKCGRINK-AKE 388 (622)
Q Consensus 312 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-A~~ 388 (622)
+..+|+..|.++... +.-+......+..+|...+++++++++|+.+.+... -.+..+|.+.+--+-+.=.+.- |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345666666664333 222334455566667777777777777776655421 1234455444432221111111 111
Q ss_pred HhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCC
Q 006997 389 VFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIE 467 (622)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 467 (622)
+.+. -...+.+|.++..+|.-+++.+.|++.|++..+ +.|+ ..+|+.+..-+.....+|.|...|+.++ ++.
T Consensus 413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~ 485 (638)
T KOG1126|consen 413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVD 485 (638)
T ss_pred HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCC
Confidence 1111 123456677777777777777777777777666 6663 5666666666666667777777776665 333
Q ss_pred C-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 006997 468 P-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMAN 544 (622)
Q Consensus 468 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (622)
| +-..|.-+.-.|.+.++++.|+-.|+++. +.|. ......++..+.+.|+.++|++++++++.++|.++-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 3 23334445566677777777777776665 3333 4445556666666677777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 006997 545 LFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~ 564 (622)
++...+++++|+..++++.+
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 77777777777777766654
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2e-12 Score=121.53 Aligned_cols=497 Identities=10% Similarity=0.002 Sum_probs=255.5
Q ss_pred cHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhC
Q 006997 32 TFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRA 111 (622)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 111 (622)
-+..+++-+..+..+..|.-+-+.+...+..|+. ---+.+.+.-.|++..|..+...-.-...|..+......++.+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d--~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLTNDPAD--IYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHH--HHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3555555555666777777777777666534433 33466777778888888777665432267777888888888899
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh--hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHh
Q 006997 112 CLNDEAILVLKEMWVLGLELSASTFVSVVSGCS--FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFD 189 (622)
Q Consensus 112 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 189 (622)
.++++|+.++..-. +.-+...+-.--.+.. ...+.+....-.+.++ +-.-...|.....+++|...|.
T Consensus 96 k~~~~al~vl~~~~---~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essi-------c~lRgk~y~al~n~~~ar~~Y~ 165 (611)
T KOG1173|consen 96 KEWDQALLVLGRGH---VETNPFSYYEKDAANTLELNSAGEDLMINLESSI-------CYLRGKVYVALDNREEARDKYK 165 (611)
T ss_pred HHHHHHHHHhcccc---hhhcchhhcchhhhceeccCcccccccccchhce-------eeeeeehhhhhccHHHHHHHHH
Confidence 99999998887331 1111111100000000 0000000000000000 0011123444456667777776
Q ss_pred hcCCCCcchHHHHHHHHHcCC-ChhHHHHHHHHHHHC-CCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCch
Q 006997 190 EIGETSIVSWTTIIGGYVNVG-NVNEAFGLCNQMRRM-SVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDP 267 (622)
Q Consensus 190 ~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (622)
+..-.|+..+.++...-...= -.++-..+|+.+.-. -...+......+.........-+.....-.+..-.+...+..
T Consensus 166 ~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 166 EALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred HHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 665555554444332211110 011112222210000 001111111111111100000000000000011112344445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 006997 268 LDNLLVSMYTKCGDLELARRVFDAVLEKSV---FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAE 344 (622)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 344 (622)
+......-+...+++.+..++++.+.+.++ ..+..-|..+...|+..+-..+=.++.+.- +-.+.+|-++...|..
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 555555566666777777777776654433 344445556666777666666666666652 3345666666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHH
Q 006997 345 LGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLF 421 (622)
Q Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (622)
.|+.++|.++|.+....+ +.-...|-.+...|+-.|.-+.|...+....+ .....+--+..-|.+.++.+.|.+.|
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 677777777776665543 22234556666666666666666666554332 11122222334456666677777777
Q ss_pred HHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhc-CC---C-CChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006997 422 YKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNF-GI---E-PSIEHYLCLVDLLGRAGRFDLALKTIHE 495 (622)
Q Consensus 422 ~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (622)
.+... +.|+ +...+-+.-.....+.+.+|..+|+..+..- .+ . -...+++.|..+|.+.+.+++|+..+++
T Consensus 404 ~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 66665 5554 4445555555555666677777666654210 00 0 1234466666677777777777777766
Q ss_pred CC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 496 MP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 496 ~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
.. .+.+..++.+++-.|...|+++.|...|.+++.+.|++..+-..|..+
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 54 445566666666666677777777777777777777665555555444
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=1.4e-12 Score=127.84 Aligned_cols=284 Identities=16% Similarity=0.073 Sum_probs=172.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHH--HHHHHHHhcCCHHHH
Q 006997 209 VGNVNEAFGLCNQMRRMSVTPDLVV-FLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDN--LLVSMYTKCGDLELA 285 (622)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 285 (622)
.|+++.|.+.+....+.. +++.. |..........|+++.+...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466776666665544321 11222 222233335566666666666666543 33332221 224455556666666
Q ss_pred HHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 006997 286 RRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNG 362 (622)
Q Consensus 286 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 362 (622)
...++++.+. ++.....+...|.+.|++++|.+++..+.+.+..+ ......+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHH-----------------------
Confidence 6665555322 44555555666666666666666666666554332 11111000
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 006997 363 LESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTS 439 (622)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 439 (622)
...|..++.......+.+...++++.+++ .++.....+...+...|+.++|.+.+++..+ .+|+....
T Consensus 229 ----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~-- 299 (398)
T PRK10747 229 ----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV-- 299 (398)
T ss_pred ----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--
Confidence 01112222222233344555555555542 4666777778888888888888888888876 45555322
Q ss_pred HHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCC
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHN 517 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 517 (622)
++.+....++.+++.+..+...++ .| |+..+.++...+.+.|++++|.+.|+++. ..|+...+..+...+.+.|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 233344558888888888888855 44 56667788888999999999999998876 67888888888888889999
Q ss_pred HHHHHHHHHHHHccC
Q 006997 518 VELGEYAAKNLLTLN 532 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~ 532 (622)
.++|.+++++.+.+.
T Consensus 377 ~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999887754
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-11 Score=116.81 Aligned_cols=261 Identities=16% Similarity=0.093 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006997 296 SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIH 375 (622)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (622)
++.....-..-+...+++.+..++++...+.. ++....+..-|..+...|+...-..+-..+++.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33444455566778899999999999988864 4555566666667888888877777777777664 667888999999
Q ss_pred HHHhcCChHHHHHHhccCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchH
Q 006997 376 MFSKCGRINKAKEVFERVPDKD---LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVD 451 (622)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~ 451 (622)
-|.-.|+..+|.+.|.+...-| ...|-.+..+|+..|..++|+..+..+.+ +-|.. -.+..+.--|.+.++.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar---l~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR---LMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH---hccCCcchHHHHHHHHHHhccHH
Confidence 9999999999999999877533 35899999999999999999999998877 44442 34555666788999999
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC----cHHhHHHHHHHHHhcCCHHHH
Q 006997 452 DGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-----VEV----QAQVWAPLLSACMKHHNVELG 521 (622)
Q Consensus 452 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~----~~~~~~~l~~~~~~~~~~~~a 521 (622)
.|.++|.++. ++.| |+...+-+.-.....+.+.+|..+|+... ..+ -.++++.|+.+|++.+.+++|
T Consensus 398 LAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999988 6777 57778888888888899999999998764 111 245688999999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 522 EYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+..+++++.+.|.+++++..+|-+|...|+++.|.+.|.+.+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998865
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=2.4e-12 Score=126.85 Aligned_cols=285 Identities=13% Similarity=0.009 Sum_probs=142.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCch-hHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--HHHHHHHHHHHHhcCChHHHH
Q 006997 243 QVGNLFLALSMHSLLLKSGYNNEDP-LDNLLVSMYTKCGDLELARRVFDAVLE--KS--VFLWTSMIGGYAQLGYPSEAV 317 (622)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~ 317 (622)
..|+++.|++.+....+. .|++. .+-....++.+.|+.+.|.+.+.+..+ |+ ....-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 346666666666554443 22222 222233445555555555555555421 11 122222344555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 006997 318 NLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKD 397 (622)
Q Consensus 318 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 397 (622)
..++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a--------------------- 231 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA--------------------- 231 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------------
Confidence 5555555543 113334445555555555555555555555555422111110000000
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC---CCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHH-
Q 006997 398 LAVWSAMINGYAIHGMGDQALNLFYKMQHVEG---LKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHY- 473 (622)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~- 473 (622)
..+....+..+++.+.+..+.+ .. .+.+...+..+...+...|+.++|.+.+++..++ .|+....
T Consensus 232 -------~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~ 300 (409)
T TIGR00540 232 -------EIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAIS 300 (409)
T ss_pred -------HHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccch
Confidence 0111111122222223333322 00 1124555666666666666777777766666643 3332210
Q ss_pred HHHHHH--HHhcCChHHHHHHHHhCC-CCCc-H--HhHHHHHHHHHhcCCHHHHHHHHH--HHHccCCCCCchHHHHHHH
Q 006997 474 LCLVDL--LGRAGRFDLALKTIHEMP-VEVQ-A--QVWAPLLSACMKHHNVELGEYAAK--NLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 474 ~~l~~~--~~~~g~~~~A~~~~~~~~-~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~ 545 (622)
..++.. ....++.+.+.+.+++.. ..|+ + ....++++.+.+.|++++|.+.++ .+++..|+ +..+..++.+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~l 379 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADA 379 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHH
Confidence 001111 122355666666666654 2333 3 456677777888888888888888 46667774 4446688888
Q ss_pred HHhcCChHHHHHHHHHhh
Q 006997 546 FTSAGMWKEAATARGLMD 563 (622)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~ 563 (622)
+.+.|+.++|.+++++..
T Consensus 380 l~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 380 FDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 888888888888887654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=8.1e-12 Score=123.17 Aligned_cols=288 Identities=13% Similarity=0.037 Sum_probs=200.0
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHH
Q 006997 206 YVNVGNVNEAFGLCNQMRRMSVTPDLV-VFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLEL 284 (622)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (622)
....|+++.|.+.+.+..+. .|+.. .+..........|+.+.+.+.+....+....+...+.......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 34679999999999887765 45543 3445566777889999999999998775422222344556888999999999
Q ss_pred HHHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCChHHHHHHHHHHHH
Q 006997 285 ARRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATT-LSACAELGSLSKGKEIEEYIVL 360 (622)
Q Consensus 285 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~ 360 (622)
|...++.+.+. ++..+..+...+...|++++|.+.+..+.+.++. +...+..+ ..++
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------ 232 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------ 232 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH------------------
Confidence 99999988543 6678889999999999999999999999998754 33333211 1111
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 006997 361 NGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVY 437 (622)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 437 (622)
..++..-......+...+.+...++ .++..+..+...+...|+.++|.+.+++..+ ..||....
T Consensus 233 ----------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~ 299 (409)
T TIGR00540 233 ----------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAI 299 (409)
T ss_pred ----------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccc
Confidence 0000000111122333334444432 3666677777788888888888888888877 45554421
Q ss_pred ---HHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-h--hHHHHHHHHHHhcCChHHHHHHHHh--CC-CCCcHHhHHHH
Q 006997 438 ---TSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-I--EHYLCLVDLLGRAGRFDLALKTIHE--MP-VEVQAQVWAPL 508 (622)
Q Consensus 438 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~-~~~~~~~~~~l 508 (622)
..........++.+.+.+.+++..+. .|+ + ....++...+.+.|++++|.+.|+. .. ..|+...+..+
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 11222233457778888888887754 443 3 5566888889999999999999994 32 57888778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHc
Q 006997 509 LSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 509 ~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
+..+.+.|+.++|.+++++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.2e-14 Score=134.25 Aligned_cols=252 Identities=15% Similarity=0.163 Sum_probs=85.7
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhc-CCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhCC
Q 006997 35 LVLKACANINSIWDGKRVHSHVLKVG-FQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRAC 112 (622)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~ 112 (622)
.+...+.+.|+++.|.+++....... .+.+...|..+.......++++.|++.++.+... +.+...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 33555566677777777665443332 2334445555555555666777777777766654 2234445555555 5667
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcC
Q 006997 113 LNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIG 192 (622)
Q Consensus 113 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 192 (622)
++++|.++++...+.. + ++..+..++..+.+.|+++++.++++.+.
T Consensus 92 ~~~~A~~~~~~~~~~~--~--------------------------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--G--------------------------------DPRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred cccccccccccccccc--c--------------------------------ccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7777777666554421 1 22233445555666666666666666643
Q ss_pred -----CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc
Q 006997 193 -----ETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPD-LVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNED 266 (622)
Q Consensus 193 -----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (622)
..+...|..+...+.+.|+.++|++.+++..+. .|+ ......++..+...|+.+++..++....+.. +.++
T Consensus 138 ~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~ 214 (280)
T PF13429_consen 138 ELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDP 214 (280)
T ss_dssp H-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSC
T ss_pred hccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHH
Confidence 134455666667777777777777777777664 343 5556667777777777777777777766654 5566
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006997 267 PLDNLLVSMYTKCGDLELARRVFDAVLE---KSVFLWTSMIGGYAQLGYPSEAVNLFKRLL 324 (622)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 324 (622)
..+..+..+|...|+.++|...|++... .|+.....+..++...|+.++|..+.++..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6677777777777788888777777632 366677777777778888888877776654
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.6e-10 Score=102.47 Aligned_cols=268 Identities=11% Similarity=0.018 Sum_probs=136.4
Q ss_pred HHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhCCCch
Q 006997 37 LKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRACLND 115 (622)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~ 115 (622)
+.-+...+|+..|..+++.-...+-+....+-.-+...+.+.|++++|...+..+.+. .++...|-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4444556677777777776654432222223333445556677888887777766554 555566666666666667777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHhhhh--hhh---hHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhh
Q 006997 116 EAILVLKEMWVLGLELSASTFVSVVSGCS--FRQ---GISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDE 190 (622)
Q Consensus 116 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 190 (622)
+|..+-... |+......++-.++ +.. ....+..+.. ...---+|..+..-.-++.+|+.++.+
T Consensus 109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 776665443 23333333333322 111 1111111111 112223455555555677888888888
Q ss_pred cCC--CCcchHHHHH-HHHHcCCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc
Q 006997 191 IGE--TSIVSWTTII-GGYVNVGNVNEAFGLCNQMRRMSVTPDLV-VFLNLILGCAQVGNLFLALSMHSLLLKSGYNNED 266 (622)
Q Consensus 191 ~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (622)
+.. |+....|.-+ -+|.+..-++-+.+++.-.... -||+. ..+..+....+.=+-..|++-...+.+.+-..
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 776 3444555533 4566777777777777766553 34432 33333333333222222333333333222110
Q ss_pred hhHHHHHHHHHhc-----CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006997 267 PLDNLLVSMYTKC-----GDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRL 323 (622)
Q Consensus 267 ~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 323 (622)
| ..+.-.++. ..-+.|++++-.+.+.=+.+.-.|+--|.+++++.+|..+.+++
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc
Confidence 0 011111111 23345555555444444455566667777888888888777665
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-10 Score=113.09 Aligned_cols=125 Identities=18% Similarity=0.165 Sum_probs=106.2
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHH
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACM 513 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~ 513 (622)
|......+.+.+..++|...+.++. ++.| ....|......+...|++++|.+.|.... ..|+ +.+..+++..+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555667788888899988888877 3344 56777777788899999999999998876 5555 778889999999
Q ss_pred hcCCHHHHHH--HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 514 KHHNVELGEY--AAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 514 ~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+.|+...|.. ++..+++++|.++.+|+.+|.++.+.|+.++|.+.|+...+
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 9998888877 99999999999999999999999999999999999998765
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=2.3e-09 Score=102.80 Aligned_cols=509 Identities=14% Similarity=0.112 Sum_probs=256.1
Q ss_pred cccHHHHHHHhhccCChhhHHHHHHHHHHh-cCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHH
Q 006997 30 SFTFPLVLKACANINSIWDGKRVHSHVLKV-GFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAH 108 (622)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 108 (622)
+..|..-+..+..++++..-...|+..+.. .+.-...+|...+...-..+-++.+..+++... +-++..-+-.|..+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL--k~~P~~~eeyie~L 179 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL--KVAPEAREEYIEYL 179 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 334556666667778888888888776644 334445677777877777888888888888877 55556678888888
Q ss_pred HhCCCchHHHHHHHHHHHcC------CCCChhhHHHHHhhhh--hhhhHH-HHHHHHHhCCCCC---ChhhHhHHHHHHH
Q 006997 109 SRACLNDEAILVLKEMWVLG------LELSASTFVSVVSGCS--FRQGIS-MHCCVYKLGLLNN---EIPLANSVMSMYA 176 (622)
Q Consensus 109 ~~~~~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~--~~~~~~-~~~~~~~~~~~~~---~~~~~~~l~~~~~ 176 (622)
+..++.++|-+.+....... .+.+...|.-+....+ ...... -.+.+++.|+..- -...|.+|.+-|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 88899988888888776432 1223333333333333 111111 1234444454321 2346788999999
Q ss_pred hcCChHHHHHHHhhcCC--CCcchHHHHHHHHHcCC----------------C------hhHHHHHHHHHHHCCC-----
Q 006997 177 KFGKVNEARSIFDEIGE--TSIVSWTTIIGGYVNVG----------------N------VNEAFGLCNQMRRMSV----- 227 (622)
Q Consensus 177 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~----------------~------~~~a~~~~~~m~~~~~----- 227 (622)
+.|+++.|..+|++..+ -.+..|..+.++|++-. + ++-.+.-|+.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 99999999999987655 22333344444433211 1 1112222222222110
Q ss_pred ------CCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC------CchhHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 006997 228 ------TPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNN------EDPLDNLLVSMYTKCGDLELARRVFDAVLEK 295 (622)
Q Consensus 228 ------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (622)
+-+..+|..- .-...|+..+....+.++.+.- .| -...|..+...|-..|+++.|..+|++..+-
T Consensus 340 VlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 0011111111 1111233444444444444321 11 1123445555555666666666666655433
Q ss_pred CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh
Q 006997 296 SV-------FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQ 368 (622)
Q Consensus 296 ~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 368 (622)
+- ..|......-.+..+++.|+++.+..... |.... + .+...+..-++ . +-.+..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~----~-~~yd~~~pvQ~-r---------lhrSlk 478 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE----L-EYYDNSEPVQA-R---------LHRSLK 478 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh----h-hhhcCCCcHHH-H---------HHHhHH
Confidence 21 23334444444455555555555544332 11110 0 00011110000 0 001233
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHH---HHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHH
Q 006997 369 VQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAM---INGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSAC 444 (622)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~ 444 (622)
+|...++..-..|-++....+|+++.+--+.|=..+ ...+-.+.-++++.+++++-.. .--.|+. ..|+..+.-+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~-LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS-LFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc-cCCCccHHHHHHHHHHHH
Confidence 445555555556666666667766654222111111 1222334456677777766554 2223443 3444444433
Q ss_pred hc---cCchHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCc--HHhHHHHHHHHHhc
Q 006997 445 SH---SGMVDDGLSFFKSMQSNFGIEPSI--EHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQ--AQVWAPLLSACMKH 515 (622)
Q Consensus 445 ~~---~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~ 515 (622)
.+ ...++.|..+|++.++ |.+|.. ..|-.....=.+.|-...|+.+++++. .++. ...|+.++.-....
T Consensus 558 i~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 32 2356777777777764 445431 222222333344566677777777764 2222 23444444433322
Q ss_pred CCHHHHHHHHHHHHccCCCCCch--HHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGN--YILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
=-+.....+|+++++.-|++... -...+++-.+.|..+.|..++.--.+
T Consensus 636 yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 23344566777777766643322 23446666677777777777765444
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=6.1e-11 Score=103.93 Aligned_cols=216 Identities=18% Similarity=0.169 Sum_probs=112.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCC--chhHHHHHHHHHhcCCHHHH
Q 006997 209 VGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSG-YNNE--DPLDNLLVSMYTKCGDLELA 285 (622)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a 285 (622)
+++.++|.++|-+|.+.. +.+..+-.+|.+.|.+.|..+.|..+++.+.++. .+.+ ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456778888888877632 2223344456666777777777777777666542 1111 11233445556666666666
Q ss_pred HHHHhhcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHH
Q 006997 286 RRVFDAVLEKS---VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEA----TLATTLSACAELGSLSKGKEIEEYI 358 (622)
Q Consensus 286 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~ 358 (622)
+.+|..+.+.+ ..+...|+..|-...+|++|+++-+++.+.+-.+... .|.-+...+....+.+.|...++.+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 66666665532 2344556666666666666666666666554333321 2333444444445555555555555
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 006997 359 VLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLA----VWSAMINGYAIHGMGDQALNLFYKMQH 426 (622)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (622)
.+.+ +.++.+--.+.+.+...|+++.|.+.++.+.+.|+. +...+..+|.+.|+.++....+.++.+
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5443 223333333444444555555555555544433322 233344444555555555555544444
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=9.9e-11 Score=108.31 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 006997 269 DNLLVSMYTKCGDLELARRVFDAVLE---KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAEL 345 (622)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 345 (622)
|..+..+|....+.++....|..... .++.+|..-...+.-.+++++|..-|++.+... +-+...|..+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 44444445555555555555544421 133444444444444555555555555554432 11233444444444455
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-------hhH--HHHHHHHHHHcCCH
Q 006997 346 GSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KD-------LAV--WSAMINGYAIHGMG 414 (622)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-------~~~--~~~l~~~~~~~~~~ 414 (622)
+.++.+...|++..+. +|..+.+|+-....+..++++++|.+.|+...+ |+ ..+ -..++. +.=.+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhH
Confidence 5555555555555443 344555555555555555666666655554431 21 111 111111 1123677
Q ss_pred HHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHhH
Q 006997 415 DQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 415 ~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
..|.+++.+..+ +.|.. ..|..|...-.+.|+.++|+++|++..
T Consensus 520 ~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 520 NQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888888877 77764 578888888888888888888888765
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=5.6e-10 Score=101.18 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=57.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 006997 209 VGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRV 288 (622)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 288 (622)
.|++.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-.++.++-+..-.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544222 2233344444455556666655555555442233444444444444555555555444
Q ss_pred HhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006997 289 FDAVL---EKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSV 328 (622)
Q Consensus 289 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 328 (622)
++++. ..++........+|.+.|++.....++.++.+.|.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 44332 22344444444555555555555555555554443
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=1.5e-10 Score=104.84 Aligned_cols=253 Identities=12% Similarity=0.082 Sum_probs=145.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGR 382 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (622)
-+.+-.+.|+.+.+-.++.+..+.--.++...+.+..+.....|+++.|..-.+.+.+.+ +.++.+......+|.+.|+
T Consensus 124 aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~ 202 (400)
T COG3071 124 AAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGA 202 (400)
T ss_pred HHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhcc
Confidence 333444445555555555544443222333333344444444555555555555444443 3344444445555555555
Q ss_pred hHHHHHHhccCCCCC-----------hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchH
Q 006997 383 INKAKEVFERVPDKD-----------LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVD 451 (622)
Q Consensus 383 ~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 451 (622)
+.....++..+.+.. ..+|+.++.-....+..+.-...|+.... ..+.++..-.+++.-+...|+.+
T Consensus 203 ~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 203 WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChH
Confidence 555555555444321 12455555544444444444455555543 23444555566666777778888
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006997 452 DGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLL 529 (622)
Q Consensus 452 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 529 (622)
+|.++.++..++ +..|+ ...+ -...+-++...-++..++.. .+.++..+.+|+..|.+++.+.+|...++.++
T Consensus 281 ~A~~~i~~~Lk~-~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 281 EAQEIIEDALKR-QWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred HHHHHHHHHHHh-ccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888877777755 44444 1111 12234455555555554443 23345677888888888888888888888888
Q ss_pred ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 530 TLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 530 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
...| +.+.|..+++++.+.|+..+|.++++....
T Consensus 356 ~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 356 KLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8888 678888888888888888888888887653
No 58
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2e-09 Score=95.73 Aligned_cols=464 Identities=12% Similarity=0.086 Sum_probs=277.9
Q ss_pred HHHhhcCCChhHHHHHhccCCCC-CCCcchHH-HHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh-----
Q 006997 72 IDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWN-SIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS----- 144 (622)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----- 144 (622)
+.-+...+++..|+.+++--... .......+ .+..++.+.|++++|+..|..+.+.. .|+......+ ..|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnL-Acc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNL-ACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhH-HHHHHHHHH
Confidence 44556678899999988765432 11122222 34567789999999999999987744 3333333222 1111
Q ss_pred hhhhHHHHHHHHHhCCCCCChhh-HhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 006997 145 FRQGISMHCCVYKLGLLNNEIPL-ANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMR 223 (622)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 223 (622)
..+++.+.... | +.+. ...|+....+.|+-.+-..+-+.+.+.. ..--++.....-.-.+++|++++....
T Consensus 107 Y~eA~~~~~ka------~-k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 107 YIEAKSIAEKA------P-KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHhhC------C-CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344333322 2 3333 3444566666777666666555554321 222334444444456889999998887
Q ss_pred HCCCCCCHhHHHHHHH-HHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHH
Q 006997 224 RMSVTPDLVVFLNLIL-GCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTS 302 (622)
Q Consensus 224 ~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 302 (622)
.. .|+-...+.-+. +|.+..-++-+.++++-.++. ++.++...|.......+.=.-..|..-..++...-...| .
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~ 254 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-P 254 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-h
Confidence 64 355555554333 455667777777777766654 345555555554444443222222222222221111111 1
Q ss_pred HHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006997 303 MIGGYAQL-----GYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMF 377 (622)
Q Consensus 303 l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (622)
.+.-.++. ..-+.|++++-.+.+. .|.. -..++-.|.+.+++.+|..+.+.+. |.++.-|-.-.-.+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVF 326 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHH
Confidence 22223333 3456778777766543 3322 2345556889999999988876652 33333332222223
Q ss_pred Hhc-------CChHHHHHHhccCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh
Q 006997 378 SKC-------GRINKAKEVFERVPDK-----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACS 445 (622)
Q Consensus 378 ~~~-------~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 445 (622)
... ..+.-|.+.|+-.-.. .+.--.++.+.+.-..++++++..+..+.. .-. .|...-..+..+++
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~-NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFT-NDDDFNLNLAQAKL 404 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-CcchhhhHHHHHHH
Confidence 332 3456677777765432 333455677777788899999999999886 333 33333345788999
Q ss_pred ccCchHHHHHHHHHhHHhcCCC-CChhHHH-HHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHH-HHHHHHhcCCHHHHH
Q 006997 446 HSGMVDDGLSFFKSMQSNFGIE-PSIEHYL-CLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAP-LLSACMKHHNVELGE 522 (622)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~ 522 (622)
..|++.+|.++|-.+. |.+ .|..+|. .|.++|.++++++-|++++-++..+.+..++.. +..-|.+.+.+=-|.
T Consensus 405 atgny~eaEelf~~is---~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRIS---GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred HhcChHHHHHHHhhhc---ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 333 3555665 567899999999999999999874444444444 455788999999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCC
Q 006997 523 YAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTKEPG 572 (622)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 572 (622)
+.|..+-.++| +|+.|. |+--...-+|..+......+.|+
T Consensus 482 KAFd~lE~lDP-~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 482 KAFDELEILDP-TPENWE---------GKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HhhhHHHccCC-CccccC---------CccchHHHHHHHHHcCCCCCCch
Confidence 99999988999 565553 44444556777776655555553
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1.5e-10 Score=101.60 Aligned_cols=293 Identities=14% Similarity=0.144 Sum_probs=160.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC-CH------HHHHHHHHHHHhcCChHHHH
Q 006997 245 GNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK-SV------FLWTSMIGGYAQLGYPSEAV 317 (622)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~------~~~~~l~~~~~~~~~~~~a~ 317 (622)
.+.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+++-..+.++ |. .+.-.|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45556666666665532 334444455666666666666666665555332 21 23334455555566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 006997 318 NLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKD 397 (622)
Q Consensus 318 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 397 (622)
.+|..+.+.+ ..-......|+..|-...+|++|.++-+.+.+.+.++... .+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA----------------------- 180 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIA----------------------- 180 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHH-----------------------
Confidence 6666555543 2233344455555555555555555555554443222110 001
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHH
Q 006997 398 LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCL 476 (622)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 476 (622)
..|.-+...+....+.+.|..++.+..+ ..|+.+ .-..+.+.....|+++.|.+.|+.+.+. +..--..+...|
T Consensus 181 -qfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L 255 (389)
T COG2956 181 -QFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEML 255 (389)
T ss_pred -HHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence 1233344455555667777777777666 445432 3334455666777777777777777644 222235566667
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH-H--hcCCh
Q 006997 477 VDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF-T--SAGMW 552 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~ 552 (622)
..+|...|+.++....+.++. ..+.......+........-.+.|...+.+-+...|. ...+..+.+.. . .-|+.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccch
Confidence 777777777777777776654 4444444444444444444556666666666667773 33344444433 2 23567
Q ss_pred HHHHHHHHHhhhCCCccCC
Q 006997 553 KEAATARGLMDDRRLTKEP 571 (622)
Q Consensus 553 ~~A~~~~~~~~~~~~~~~~ 571 (622)
.+.+..++.|....++..|
T Consensus 335 k~sL~~lr~mvge~l~~~~ 353 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKP 353 (389)
T ss_pred hhhHHHHHHHHHHHHhhcC
Confidence 7888888888776665555
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.7e-09 Score=98.07 Aligned_cols=369 Identities=12% Similarity=0.037 Sum_probs=248.1
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcch-HHHHHHHHHcCC-C-hhHHH-------------HHHHHHHHC--
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVS-WTTIIGGYVNVG-N-VNEAF-------------GLCNQMRRM-- 225 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~-~-~~~a~-------------~~~~~m~~~-- 225 (622)
+.......+..|...|+-+.|.....+.+..-... -|.|+.-+.+.| + .+.+. +.+.-..+.
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 55555566777778888888888888877633222 333333332222 1 11111 111111111
Q ss_pred -------------CCCCCHhHHHHHHHHHhc--cCChHHHHHHHHHHHH-hCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 006997 226 -------------SVTPDLVVFLNLILGCAQ--VGNLFLALSMHSLLLK-SGYNNEDPLDNLLVSMYTKCGDLELARRVF 289 (622)
Q Consensus 226 -------------~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 289 (622)
.+.|+..+....+.+++. .++-..+...+-.+.. .-++.+......+...+...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 123333444444444433 3333344444333333 347888889999999999999999999999
Q ss_pred hhcCCCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc
Q 006997 290 DAVLEKSVFLWTS---MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESN 366 (622)
Q Consensus 290 ~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 366 (622)
++...-|+.+... ..-.+.+.|+.++...+...+.... .-+...|-.-....-..++++.|..+-++.++.+ +.+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 9876555443332 3334567788888877777765432 1222233233334455678888888888887765 445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCC--C-CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH-H
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVP--D-KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSIL-S 442 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll-~ 442 (622)
...+-.-...+...|++++|.-.|+... . .+...|.-++.+|...|++.+|..+-....+ -++.+..+...+. .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhhcce
Confidence 5555555677888999999999998765 3 4778999999999999999999988877665 2334556665553 3
Q ss_pred HHh-ccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHH
Q 006997 443 ACS-HSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 443 ~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 519 (622)
.|. ....-++|.+++++.. .+.|+ ....+.+...+.+.|..++++.++++.. ..||....+.|+..+...+.++
T Consensus 412 V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 333 3334578999998877 55776 4566778889999999999999999876 7899999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCchH
Q 006997 520 LGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~ 539 (622)
+|...|..++.++|++..+.
T Consensus 489 ~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhcCccchHHH
Confidence 99999999999999765433
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=1.4e-09 Score=103.32 Aligned_cols=438 Identities=12% Similarity=0.107 Sum_probs=245.7
Q ss_pred HHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHH
Q 006997 72 IDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGIS 150 (622)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~ 150 (622)
++.+...|++++|.+....+... +.+...+..=+-++.+.+++++|+.+.+.-... . ++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~----~~-------------- 78 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--L----VI-------------- 78 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--h----hc--------------
Confidence 34455566666666666655544 344555566666666666677766444332100 0 00
Q ss_pred HHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 006997 151 MHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPD 230 (622)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 230 (622)
+... -.-.-+..+.++.++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+..--
T Consensus 79 -------------~~~~-fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 79 -------------NSFF-FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred -------------chhh-HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 0000 01112234567777777777755444544555556677788888888888888766543211
Q ss_pred -HhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHH---HHHHHHhcCCHHHHHHHHhhc--------CCCC--
Q 006997 231 -LVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNL---LVSMYTKCGDLELARRVFDAV--------LEKS-- 296 (622)
Q Consensus 231 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~--------~~~~-- 296 (622)
...-..++.+-... .+ ..+......| ..+|.. ....+...|++.+|+++++.. ...|
T Consensus 145 d~~~r~nl~a~~a~l----~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~ 215 (652)
T KOG2376|consen 145 DEERRANLLAVAAAL----QV----QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN 215 (652)
T ss_pred HHHHHHHHHHHHHhh----hH----HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc
Confidence 11111111111100 00 0111111122 223332 233456778888888887766 1111
Q ss_pred ---H-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHhccCChHH--HHHHHH-------
Q 006997 297 ---V-----FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLS---ACAELGSLSK--GKEIEE------- 356 (622)
Q Consensus 297 ---~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~---~~~~~~~~~~--a~~~~~------- 356 (622)
+ .....|..++...|+.++|.++|...++.. .+|......... +.....++.. ....++
T Consensus 216 eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~ 294 (652)
T KOG2376|consen 216 EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLA 294 (652)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhH
Confidence 1 133446667888999999999999998875 344432222211 2221111111 111111
Q ss_pred ----HHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC-hhHHHHHHHHH--HHcCCHHHHHHHHHHhHHhcC
Q 006997 357 ----YIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKD-LAVWSAMINGY--AIHGMGDQALNLFYKMQHVEG 429 (622)
Q Consensus 357 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~ 429 (622)
.............-+.++.+|. +..+.+.++....+... ...+.+++... ++...+.++.+++....+
T Consensus 295 ~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--- 369 (652)
T KOG2376|consen 295 EFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--- 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---
Confidence 1111111112222344555554 44566777776666432 23334444332 233357788888888776
Q ss_pred CCCCH--HHHHHHHHHHhccCchHHHHHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 006997 430 LKPDA--VVYTSILSACSHSGMVDDGLSFFK--------SMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-- 497 (622)
Q Consensus 430 ~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 497 (622)
-.|.. ......+......|+++.|.+++. .+. .+...+.+...+...+.+.++.+-|..++.+..
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 34443 455666677889999999999998 444 234456677778888988888777777776653
Q ss_pred ---CCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 498 ---VEVQAQ----VWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 498 ---~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
..+... .|.-+...-.++|+-++|..+++++++.+|++..+...++-+|++. +.+.|..+-+++
T Consensus 447 ~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 447 WRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 112222 3333444456779999999999999999999999999999998876 466677666554
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=3e-11 Score=110.60 Aligned_cols=195 Identities=13% Similarity=0.096 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILS 442 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~ 442 (622)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+ ..| +...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT---LNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHH
Confidence 45566667777777777777777776543 2355677778888889999999999998887 334 3566777888
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVEL 520 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~ 520 (622)
.+...|++++|.+.++++............+..+...+...|++++|.+.+++.. . +.+...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999988541222245567778888999999999999998876 3 3346678888999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 521 GEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
|...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888899999999999999999999887764
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=2.7e-09 Score=106.03 Aligned_cols=482 Identities=11% Similarity=0.072 Sum_probs=281.9
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 006997 51 RVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR--LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLG 128 (622)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 128 (622)
.++..+...|+.|+..+|.++|..||..|+.+.|- +|..|.-. +-+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677788999999999999999999999999998 88888754 456677899999999999887766
Q ss_pred CCCChhhHHHHHhhhh-------hhhhHHHHHH----HHHhCCCC-------------CChhhHhHHHHHHHhcCChHHH
Q 006997 129 LELSASTFVSVVSGCS-------FRQGISMHCC----VYKLGLLN-------------NEIPLANSVMSMYAKFGKVNEA 184 (622)
Q Consensus 129 ~~p~~~t~~~ll~~~~-------~~~~~~~~~~----~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A 184 (622)
.|.+.||..++.++. ++..++.+.. ....|... .-.....+.+......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 788889999999988 2333331111 22222221 1222224455556666778888
Q ss_pred HHHHhhcCCCCc-chHHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 006997 185 RSIFDEIGETSI-VSWTTIIGGYVNVG-NVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGY 262 (622)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 262 (622)
++++..++.... ...-.+++-..... .+++-........+ .|++.+|..++.+-...|+.+.|..++..|.+.|+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 888877764111 01111233333222 23333333333322 59999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhhc----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006997 263 NNEDPLDNLLVSMYTKCGDLELARRVFDAV----LEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATT 338 (622)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 338 (622)
+.+..-|-.|+-+ .++...+..+++.| ..|+..|+...+..+..+|+...+ +.| .+....+.+-
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAa 303 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAA 303 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHH
Confidence 9999888887655 67777777776666 466778887777776665552221 122 2233332222
Q ss_pred HHHHhccC-----ChHH-----HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-------ChhHH
Q 006997 339 LSACAELG-----SLSK-----GKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK-------DLAVW 401 (622)
Q Consensus 339 l~~~~~~~-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~ 401 (622)
..+-.-.| ..+. ....+....-.|+.....+|...+.. ..+|+-+..+++-..+..| ++..|
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 22222222 1111 11112222223444444455444333 3368888888887777654 34455
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHh---cCCCC-------C
Q 006997 402 SAMINGYAIHGMGDQALNLFY--KMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSN---FGIEP-------S 469 (622)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-------~ 469 (622)
..++.-|.+.-+..-...++. +... ...+....-.+.....+. ....+.+-+..+... ....| -
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~~~qgls---~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYYAGQGLS---LNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH---hhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 554444433221111111111 1111 000111001111111111 222222222211111 01111 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---CCchHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG---STGNYILMANLF 546 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 546 (622)
...-+.++..+.+.-+..+++..-++....--...|..|+.-+..+...+.|.....+....+.. +-.-+..+.+++
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 23344566667776666777655554431111366888999999999999999999988664432 345677889999
Q ss_pred HhcCChHHHHHHHHHhhh
Q 006997 547 TSAGMWKEAATARGLMDD 564 (622)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~ 564 (622)
.+.+...++..+++.+.+
T Consensus 539 ~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHhHHHHHHHHHHhhhhH
Confidence 999999999999998876
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=2.7e-11 Score=106.12 Aligned_cols=228 Identities=15% Similarity=0.100 Sum_probs=163.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006997 301 TSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKC 380 (622)
Q Consensus 301 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (622)
+.+...|.+.|.+.+|.+.|+...+. .|-+.||..|-+.|.+..+++.|..++.+-.+.- |.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~--------------- 288 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PF--------------- 288 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cc---------------
Confidence 44555566666666666655555544 3444455445555555555544444444433321 11
Q ss_pred CChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHH
Q 006997 381 GRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKS 459 (622)
Q Consensus 381 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 459 (622)
|+....-+...+-..++.++|.++++...+ ..| +.....++...|.-.++++-|..+|++
T Consensus 289 ----------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 289 ----------------DVTYLLGQARIHEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ----------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 222223345566667788888888888876 444 355666777778888888999999988
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 460 MQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP---VEVQ--AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 460 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
+.+. |+ .+++.|+.+.-+|.-.++++-++.-|++.. ..|+ .++|..+.......||+..|.+.|+-++..+|+
T Consensus 350 iLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 8865 53 467888888888888889998888888775 2344 668999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 535 STGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
+...+++|+-+-.+.|++++|..++.......+
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999999999998876544
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=5e-11 Score=99.65 Aligned_cols=162 Identities=17% Similarity=0.107 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLV 477 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 477 (622)
+..-+.-+|...|+...|.+-+++..+ ..|+. .++..+...|.+.|..+.|.+.|+++.+ +.| +..+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhh
Confidence 344567789999999999999999998 77874 6888999999999999999999999984 466 578889999
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006997 478 DLLGRAGRFDLALKTIHEMPVEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWK 553 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (622)
.-++..|++++|...|+++...|. ..+|..++.+..+.|+++.|+..++++++.+|+.+.....++....+.|++-
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 999999999999999999874443 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCC
Q 006997 554 EAATARGLMDDRRL 567 (622)
Q Consensus 554 ~A~~~~~~~~~~~~ 567 (622)
.|...++....++.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999887665
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=1.3e-07 Score=91.08 Aligned_cols=441 Identities=12% Similarity=0.114 Sum_probs=237.6
Q ss_pred chhHHHHHHHhhcCCChhHHHHHhccCCCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHh
Q 006997 65 AFVQTGLIDMYSKCSDFVSSRKVLDEMPVR---LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVS 141 (622)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 141 (622)
+.+|-..+....++|++..-+..|+..... ......|...+......+-++-++.+|++.++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-------------- 167 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-------------- 167 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--------------
Confidence 445555566666666666666666654433 223445666666666666666666666666552
Q ss_pred hhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCC----------CcchHHHHHHHHHcCCC
Q 006997 142 GCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGET----------SIVSWTTIIGGYVNVGN 211 (622)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~ 211 (622)
++...+..+..++..+++++|.+.+..+... +-..|+.+-...+++-+
T Consensus 168 ----------------------~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~ 225 (835)
T KOG2047|consen 168 ----------------------APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPD 225 (835)
T ss_pred ----------------------CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcc
Confidence 3333455666677777777777777766542 22345554444444433
Q ss_pred hhH---HHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHH
Q 006997 212 VNE---AFGLCNQMRRMSVTPDL--VVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELAR 286 (622)
Q Consensus 212 ~~~---a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 286 (622)
.-. ...+++.+.. .-+|. ..+++|.+-|.+.|.++.|..++++.+..- .+..-++.+.+.|+.-....-+.
T Consensus 226 ~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~ 301 (835)
T KOG2047|consen 226 KVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAA 301 (835)
T ss_pred hhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHH
Confidence 222 2223333322 12332 345666666666666666666666655542 22223333333343221111111
Q ss_pred HHH-h--hc-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHhccCChHHH
Q 006997 287 RVF-D--AV-LEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTS-----------VRPNEATLATTLSACAELGSLSKG 351 (622)
Q Consensus 287 ~~~-~--~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----------~~~~~~~~~~ll~~~~~~~~~~~a 351 (622)
.+= . .. .+.+.. +++-.+.-|+.+...+ -+-+..+|..-.. ...|+..+.
T Consensus 302 ~me~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~ 366 (835)
T KOG2047|consen 302 KMELADEESGNEEDDV-------------DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ 366 (835)
T ss_pred HHhhhhhcccChhhhh-------------hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH
Confidence 000 0 00 000000 1111222222222211 0112223322222 223455555
Q ss_pred HHHHHHHHHcCCCC------chhHHHHHHHHHHhcCChHHHHHHhccCCCCCh-------hHHHHHHHHHHHcCCHHHHH
Q 006997 352 KEIEEYIVLNGLES------NRQVQTSLIHMFSKCGRINKAKEVFERVPDKDL-------AVWSAMINGYAIHGMGDQAL 418 (622)
Q Consensus 352 ~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 418 (622)
...+.++++.- .| -...+..+.+.|-..|+++.|..+|++..+-+- .+|..-...-.++.+++.|+
T Consensus 367 i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 367 INTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 56666665431 11 124556677777777778888777777665322 24444445555667777777
Q ss_pred HHHHHhHHhcCC----------CC-------CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 006997 419 NLFYKMQHVEGL----------KP-------DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLG 481 (622)
Q Consensus 419 ~~~~~~~~~~~~----------~p-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 481 (622)
++.++... ..- .| +...|...++.--..|-++....+|+++..- .+ .++.+.-.....+.
T Consensus 446 ~lm~~A~~-vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLE 522 (835)
T KOG2047|consen 446 KLMRRATH-VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLE 522 (835)
T ss_pred HHHHhhhc-CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHH
Confidence 77777654 111 11 1223455555556677888888888888754 22 23333334445556
Q ss_pred hcCChHHHHHHHHhCC---CCCc-HHhHHHHHHHHHh---cCCHHHHHHHHHHHHccCCCC--CchHHHHHHHHHhcCCh
Q 006997 482 RAGRFDLALKTIHEMP---VEVQ-AQVWAPLLSACMK---HHNVELGEYAAKNLLTLNPGS--TGNYILMANLFTSAGMW 552 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~---~~~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 552 (622)
...-++++.+.+++-. ..|+ ...|++.+.-+.+ ....+.|..+|+++++..|.. ...|...+..-.+-|.-
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 6777889999998865 3444 5578887776654 246889999999999987732 23466667777777888
Q ss_pred HHHHHHHHHhhh
Q 006997 553 KEAATARGLMDD 564 (622)
Q Consensus 553 ~~A~~~~~~~~~ 564 (622)
..|..++++...
T Consensus 603 r~amsiyerat~ 614 (835)
T KOG2047|consen 603 RHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHh
Confidence 888888887643
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.6e-08 Score=91.93 Aligned_cols=281 Identities=10% Similarity=-0.002 Sum_probs=181.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 006997 295 KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEAT-LATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSL 373 (622)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 373 (622)
.|+.....+...+...|+.++|+-.|++.+.. .|...+ ...-.-.+...|+.+....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 36677777778888888888888888776653 232221 1111122345677777777766665432 1122222222
Q ss_pred HHHHHhcCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCc
Q 006997 374 IHMFSKCGRINKAKEVFERVPDK---DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGM 449 (622)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 449 (622)
.......++++.|..+-++..+. ++..+-.-...+...|++++|.-.|+..+. +.|. -..|..++.+|...|.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhch
Confidence 23334456777777777766643 334444444567777888888888888776 6663 5778888888888888
Q ss_pred hHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHH-hcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHH
Q 006997 450 VDDGLSFFKSMQSNFGIEPSIEHYLCLV-DLLG-RAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAA 525 (622)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 525 (622)
+.+|.-.-+..... +..+..+...+. ..+. ...--++|.+++++.. ..|+ ....+.+...|...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 88887777666543 233444444332 2222 2223467888887765 5665 556677777788888888888888
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHH
Q 006997 526 KNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKEL 605 (622)
Q Consensus 526 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 605 (622)
++.+...| |...+..|++++...+.+.+|.+.|....+. .|+.+...+-+..+
T Consensus 462 e~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 462 EKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHH
Confidence 88888888 6778888888888888888888888877652 56666666666566
Q ss_pred HHHHH
Q 006997 606 HIKLL 610 (622)
Q Consensus 606 ~~~~~ 610 (622)
.++|+
T Consensus 515 EK~~~ 519 (564)
T KOG1174|consen 515 EKSDD 519 (564)
T ss_pred HhccC
Confidence 65554
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.35 E-value=2e-10 Score=111.89 Aligned_cols=232 Identities=15% Similarity=0.169 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-----CC-CCch-hHHHHHHHHHHhcCChHHHHHHhccCCC-------C-C
Q 006997 333 ATLATTLSACAELGSLSKGKEIEEYIVLN-----GL-ESNR-QVQTSLIHMFSKCGRINKAKEVFERVPD-------K-D 397 (622)
Q Consensus 333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-~ 397 (622)
.+...+...|...|+++.|...++...+. |. .|.. ...+.+...|...+++.+|..+|+++.. + +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666677777777777776666543 20 1121 2223456677777777777777776542 1 1
Q ss_pred ---hhHHHHHHHHHHHcCCHHHHHHHHHHhHHh----cCC-CCCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcC--C
Q 006997 398 ---LAVWSAMINGYAIHGMGDQALNLFYKMQHV----EGL-KPDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFG--I 466 (622)
Q Consensus 398 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 466 (622)
..+++.|...|.+.|++++|...++++.+. .+. .|+. ..++.+...|...+.+++|..++....+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 235666777788888888777777765541 122 2222 3466777788899999999999887765432 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHc--
Q 006997 467 EPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP---------VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLT-- 530 (622)
Q Consensus 467 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 530 (622)
.++ ..+++.|...|...|++++|.++++++. ..+. ...++.+...|.+.++..+|.++|..+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4678899999999999999999999874 1222 45678899999999999999999988765
Q ss_pred --cCCCC---CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 531 --LNPGS---TGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 531 --~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..|+. ..+|..|+.+|.++|++++|.++.+.+.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34544 45688999999999999999999998875
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=3.5e-10 Score=116.04 Aligned_cols=244 Identities=14% Similarity=0.067 Sum_probs=178.7
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006997 312 YPSEAVNLFKRLLKTSVRPN-EATLATTLSACA---------ELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCG 381 (622)
Q Consensus 312 ~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (622)
..++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+.+ |.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457888888888875 343 334444443332 2345788999999988876 557788888888899999
Q ss_pred ChHHHHHHhccCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHH
Q 006997 382 RINKAKEVFERVPD--K-DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFF 457 (622)
Q Consensus 382 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 457 (622)
++++|...|++..+ | +...+..+...+...|++++|+..++++.+ ..|+.. .+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999998764 3 455788888899999999999999999998 677643 3334455566789999999999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 458 KSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 458 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
+++... .+| ++..+..+..+|...|++++|...++++. ..|+ ...++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998754 235 45557778889999999999999999876 4444 344556666667777 4788888887764333
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 535 STGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
.+........+|.-.|+-+.+... +++.+.+
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 333333477788888998888888 7776643
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=2.6e-10 Score=106.88 Aligned_cols=189 Identities=14% Similarity=0.075 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHH
Q 006997 368 QVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSA 443 (622)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~ 443 (622)
..+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+ +.|+ ..++..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3344455555566666666666655442 2345666666666666777777776666666 5554 3455666666
Q ss_pred HhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHH
Q 006997 444 CSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELG 521 (622)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 521 (622)
+...|++++|.+.+++..+. .|+..........+...++.++|...+++.. .+|+ .|. ........|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH
Confidence 66667777777777666633 4432211111222334556677777665433 1222 221 11122223333222
Q ss_pred HHHHHHHH-------ccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 522 EYAAKNLL-------TLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 522 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
+.++.+. ++.|+.+.+|..+|.++.+.|++++|...|++..+.+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1222222 3445555677777777777777777777777776543
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=3.4e-10 Score=116.18 Aligned_cols=210 Identities=13% Similarity=0.002 Sum_probs=167.6
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCC
Q 006997 346 GSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK---------CGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGM 413 (622)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 413 (622)
++.++|...++++.+.. |.+...+..+..+|.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999998875 4455666666665542 2458899999998774 356678888888999999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 006997 414 GDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSI-EHYLCLVDLLGRAGRFDLALK 491 (622)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 491 (622)
+++|...|+++.+ ..|+ ...+..+..++...|++++|...++++.+ +.|+. ..+..++..+...|++++|+.
T Consensus 354 ~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 354 YIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999998 6776 56788888899999999999999999984 46653 333444556777899999999
Q ss_pred HHHhCC--CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 492 TIHEMP--VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 492 ~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.++++. .+|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 999875 2354 4557778888889999999999999998899988888888999999888 488888888765
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.3e-09 Score=99.72 Aligned_cols=198 Identities=16% Similarity=0.118 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006997 297 VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHM 376 (622)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (622)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~-- 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG-- 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH--
Confidence 3456666666667777777777776666542 2234445555555666666666666666555543 22333334444
Q ss_pred HHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHH
Q 006997 377 FSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
..+...|++++|.+.++++.+ ....| ....+..+..++...|++++|..
T Consensus 107 -----------------------------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 107 -----------------------------TFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred -----------------------------HHHHHcccHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555555555544 21111 22334445555555666666666
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006997 456 FFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 456 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 531 (622)
.+++.... .| +...+..+...+...|++++|...+++.. .+.+...+..+...+...|+.+.|....+.+...
T Consensus 157 ~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 157 YLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 66655532 22 34445555556666666666666665543 1223444445555555666666666665555444
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.3e-10 Score=101.96 Aligned_cols=236 Identities=11% Similarity=0.097 Sum_probs=144.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 006997 265 EDPLDNLLVSMYTKCGDLELARRVFDAVL--EKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLAT-TLSA 341 (622)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-ll~~ 341 (622)
|-.--+.+..+|.+.|.+.+|.+.|+... .+-+.||-.|-.+|.+..++..|+.++.+-.+. .|-.+||.. ..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 33344678999999999999999998874 457889999999999999999999999998875 677777643 4566
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 006997 342 CAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLF 421 (622)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (622)
+...++.+.+.++++...+.. +.++....++...|.-.++++.|... +
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Alry-------------------------------Y 347 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRY-------------------------------Y 347 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHH-------------------------------H
Confidence 777778888888888777654 34444444444444444445555444 4
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 006997 422 YKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS--IEHYLCLVDLLGRAGRFDLALKTIHEMP-V 498 (622)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 498 (622)
+++.+ .|+ -++..|..+.-+|.-.+.+|-++.-|.+..+. --.|+ ..+|..+.....-.|++.-|.+.|+-.. .
T Consensus 348 RRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 348 RRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 44444 333 23344444444444455555555544444432 11222 3344445444555555555555555443 2
Q ss_pred CC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 499 EV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 499 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
.| ....++.|.-.-.+.|++++|..+++.+....|+-.+
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccc
Confidence 22 2445555555555566666666666666666664333
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.3e-11 Score=80.31 Aligned_cols=50 Identities=30% Similarity=0.609 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 006997 194 TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ 243 (622)
Q Consensus 194 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (622)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=1.7e-07 Score=92.88 Aligned_cols=410 Identities=15% Similarity=0.147 Sum_probs=256.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHH
Q 006997 106 SAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEAR 185 (622)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 185 (622)
..+...|++++|++.++.-.. ..+| ...........+.+.|+.++|.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~D-------------------------------k~~~~E~rA~ll~kLg~~~eA~ 58 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILD-------------------------------KLAVLEKRAELLLKLGRKEEAE 58 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCC-------------------------------HHHHHHHHHHHHHHcCCHHHHH
Confidence 445778999999999977543 2333 3344567788899999999999
Q ss_pred HHHhhcCC--CCcchH-HHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh-HHHHHHHHH
Q 006997 186 SIFDEIGE--TSIVSW-TTIIGGYVN-----VGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNL-FLALSMHSL 256 (622)
Q Consensus 186 ~~~~~~~~--~~~~~~-~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~ 256 (622)
.++..+.. |+-..| ..+..+..- ..+.+...++++++...- |.......+.-.+.....+ ..+..++..
T Consensus 59 ~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~ 136 (517)
T PF12569_consen 59 KIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRP 136 (517)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHH
Confidence 99999976 444444 444444422 235677788888887653 4433333332222222222 345566677
Q ss_pred HHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcC------------------CCCHH--HHHHHHHHHHhcCChHHH
Q 006997 257 LLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVL------------------EKSVF--LWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------~~~~~--~~~~l~~~~~~~~~~~~a 316 (622)
+...|+|+ +++.|-..|.......-..+++.... .|... ++..+...|...|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 77777654 55666666665555555555554431 11222 345667788899999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC
Q 006997 317 VNLFKRLLKTSVRPN-EATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD 395 (622)
Q Consensus 317 ~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 395 (622)
++.+++.++. .|+ ...|..-.+.+-..|++.+|.+.++.+...+ ..|..+-+..+..+.++|++++|.+++.....
T Consensus 214 l~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 214 LEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 9999999987 455 5577778889999999999999999999887 55778888889999999999999999988876
Q ss_pred CChh----------HH--HHHHHHHHHcCCHHHHHHHHHHhHHhc-CC---CCCH----------HHHHHHHHHHhccCc
Q 006997 396 KDLA----------VW--SAMINGYAIHGMGDQALNLFYKMQHVE-GL---KPDA----------VVYTSILSACSHSGM 449 (622)
Q Consensus 396 ~~~~----------~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~p~~----------~~~~~ll~~~~~~g~ 449 (622)
++.. .| .....+|.+.|++..|++.|..+.+.. .+ .-|- .+|..+++..-+...
T Consensus 291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~ 370 (517)
T PF12569_consen 291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRS 370 (517)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 5421 22 234568899999999988777765421 01 1222 233334433222111
Q ss_pred -------hHHHHHHHHHhHHhcCCCCC-----------hhHHHHHHHHH---HhcCChHHHHHHHHh-----------C-
Q 006997 450 -------VDDGLSFFKSMQSNFGIEPS-----------IEHYLCLVDLL---GRAGRFDLALKTIHE-----------M- 496 (622)
Q Consensus 450 -------~~~a~~~~~~~~~~~~~~p~-----------~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~- 496 (622)
...|+++|-.+......... ..--..+..-. .+...-+++...-.+ .
T Consensus 371 ~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (517)
T PF12569_consen 371 HPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKE 450 (517)
T ss_pred CHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccc
Confidence 23455555555432100000 00001111100 111111222211100 0
Q ss_pred ---C--CCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006997 497 ---P--VEVQAQVWAPLLSACMKH-HNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGL 561 (622)
Q Consensus 497 ---~--~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (622)
+ ..+|+. +.-+... .-+++|.+.++-+.+..|++..+|..-.++|.+.|++--|++.+.+
T Consensus 451 ~~~~~~~D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 451 KVEPKKKDDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cccCCcCCCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1 122221 1222233 3468899999999999999999999999999999999999988764
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=2.8e-09 Score=99.93 Aligned_cols=232 Identities=9% Similarity=-0.021 Sum_probs=147.1
Q ss_pred CChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 006997 311 GYPSEAVNLFKRLLKTS-VRPN--EATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAK 387 (622)
Q Consensus 311 ~~~~~a~~~~~~m~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (622)
++.+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|+.+.+.. +.++..++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455566665555432 1222 2345555556667777777777777776665 445677777777888888888888
Q ss_pred HHhccCCC--C-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhc
Q 006997 388 EVFERVPD--K-DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNF 464 (622)
Q Consensus 388 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 464 (622)
+.|++..+ | +..+|..+..++...|++++|.+.|++..+ ..|+..........+...++.++|...+++....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 88777653 3 345677777788888999999999998887 6665432222233345567889999999765532
Q ss_pred CCCCChhHHHHHHHHHHhcCChHH--HHHHHHhCC-C-----CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC-CC
Q 006997 465 GIEPSIEHYLCLVDLLGRAGRFDL--ALKTIHEMP-V-----EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP-GS 535 (622)
Q Consensus 465 ~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~-~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~ 535 (622)
..|+... ..+.. ...|+..+ +.+.+.+.. . +.....|..++..+...|++++|+..|+++++.+| +.
T Consensus 195 -~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 2333222 22222 33454433 333333221 1 12345788999999999999999999999999997 55
Q ss_pred CchHHHHHHHHHhcCC
Q 006997 536 TGNYILMANLFTSAGM 551 (622)
Q Consensus 536 ~~~~~~l~~~~~~~g~ 551 (622)
......++......++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555556555444333
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.26 E-value=3.3e-07 Score=88.63 Aligned_cols=470 Identities=14% Similarity=0.131 Sum_probs=245.4
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhC
Q 006997 33 FPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRA 111 (622)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~ 111 (622)
|..++..| ..+.+.......+.+++. ++....+.....-.+...|+-++|......-... ..+.+.|+.+.-.+-..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 33344433 445566666666666663 3344444444444455678888888887766544 56678899888888888
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhc
Q 006997 112 CLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEI 191 (622)
Q Consensus 112 ~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 191 (622)
.++++|++.|+.... +.|| |...+.-+.-.=++.|+++.....-...
T Consensus 89 K~Y~eaiKcy~nAl~--~~~d-------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALK--IEKD-------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred hhHHHHHHHHHHHHh--cCCC-------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999876 3444 4444444444445556666655555444
Q ss_pred CC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHhHHHHHHH------HHhccCChHHHHHHHHHHHHhC
Q 006997 192 GE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMS-VTPDLVVFLNLIL------GCAQVGNLFLALSMHSLLLKSG 261 (622)
Q Consensus 192 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~ 261 (622)
.+ .....|..+..++.-.|++..|..++++..+.. -.|+...|..... .....|.++.|.+.+......
T Consensus 136 Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 43 344668888888888899999999998887764 2455555443222 233445555555554433221
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC--CHHHHHH-HHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHHHHH
Q 006997 262 YNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK--SVFLWTS-MIGGYAQLGYPSEAV-NLFKRLLKTSVRPNEATLAT 337 (622)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~-l~~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ 337 (622)
+......-..-...+.+.+++++|..++..+..+ |...|.. +..++.+-.+..++. .+|....+. .|.......
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~R 292 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRR 292 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchh
Confidence 0111112223334455556666666666555433 2222222 222222122222222 444433332 111111111
Q ss_pred H-HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHH
Q 006997 338 T-LSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQ 416 (622)
Q Consensus 338 l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (622)
+ +.......-.+....++....+.|+++- +..+...|-.-. ++- +++ .++..|...-....
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~---k~~-~le-----------~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPE---KVA-FLE-----------KLVTSYQHSLSGTG 354 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchh---HhH-HHH-----------HHHHHHHhhccccc
Confidence 1 1111111112223333444444444332 222222221110 000 111 11111111100000
Q ss_pred HHHHHHHhHHhcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 006997 417 ALNLFYKMQHVEGLKPDA--VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTI 493 (622)
Q Consensus 417 a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 493 (622)
.....+.- .--+|.. .++..++..+-..|+++.|..+++.+. +-.|+ ++.|..-.+.+...|.+++|..++
T Consensus 355 ~f~~~D~~---~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 355 MFNFLDDG---KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred CCCccccc---ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 00000000 0023443 345566777888888888888888877 44665 455656667788888888888888
Q ss_pred HhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC-------chHHH--HHHHHHhcCChHHHHHHHHHh
Q 006997 494 HEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST-------GNYIL--MANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 494 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~--l~~~~~~~g~~~~A~~~~~~~ 562 (622)
++.. ..+|...-..-+.-..+.+..++|.++..+-....-+-. -.|+. =|.+|.++|++-.|++-|..+
T Consensus 429 ~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 429 DEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8876 334433333455555677888888888777655432100 12332 366788888888888777666
Q ss_pred hh
Q 006997 563 DD 564 (622)
Q Consensus 563 ~~ 564 (622)
.+
T Consensus 509 ~k 510 (700)
T KOG1156|consen 509 EK 510 (700)
T ss_pred HH
Confidence 54
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=9.1e-08 Score=94.30 Aligned_cols=436 Identities=14% Similarity=0.097 Sum_probs=239.6
Q ss_pred HHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 006997 53 HSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLEL 131 (622)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 131 (622)
+.++....+.-+..+|..+.-+..++|+++.+.+.|++.... -.....|+.+...+...|....|..+++.-....-.|
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 344444445678888888888899999999999999987633 3445678888889999999999999988766543345
Q ss_pred ChhhHHHHHhh-hh-----hhhhHHHHHHHHHhC-CCC--CChhhHhHHHHHHHhcC-----------ChHHHHHHHhhc
Q 006997 132 SASTFVSVVSG-CS-----FRQGISMHCCVYKLG-LLN--NEIPLANSVMSMYAKFG-----------KVNEARSIFDEI 191 (622)
Q Consensus 132 ~~~t~~~ll~~-~~-----~~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~ 191 (622)
+..+...+... |. .+.+..+...++... ... -.+..+..+.-+|...- ...++.+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 44444444333 33 555555555555521 111 13344444444444321 122334444444
Q ss_pred CCCC---cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchh
Q 006997 192 GETS---IVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPL 268 (622)
Q Consensus 192 ~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (622)
.+.+ ...-.-+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....- +.+...
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l 549 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVL 549 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhh
Confidence 3211 111111112233444455555555555444334444444444444444445555554444433210 000001
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccC
Q 006997 269 DNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT--SVRPNEATLATTLSACAELG 346 (622)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~ 346 (622)
...-++.-. .-++.++++.....+... ...+-..+ +
T Consensus 550 ~~~~~~i~~-------------------------------~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~ 587 (799)
T KOG4162|consen 550 MDGKIHIEL-------------------------------TFNDREEALDTCIHKLALWEAEYGVQQT-----------L 587 (799)
T ss_pred chhhhhhhh-------------------------------hcccHHHHHHHHHHHHHHHHhhhhHhhh-----------h
Confidence 111111111 233444444333333220 00000000 0
Q ss_pred ChHHHHHHHHHHHH--cCCCCchhHHHHH---HHHHHhcCChHHHHHHhccCCCCC------hhHHHHHHHHHHHcCCHH
Q 006997 347 SLSKGKEIEEYIVL--NGLESNRQVQTSL---IHMFSKCGRINKAKEVFERVPDKD------LAVWSAMINGYAIHGMGD 415 (622)
Q Consensus 347 ~~~~a~~~~~~~~~--~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 415 (622)
+-....+....+.- ......+.++..+ +..-.+.-..+.....+...+.|+ ...|......+.+.++.+
T Consensus 588 ~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~ 667 (799)
T KOG4162|consen 588 DEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDD 667 (799)
T ss_pred hhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCch
Confidence 00001111111000 0001111111111 111111111111111222222232 235666777888999999
Q ss_pred HHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHH--
Q 006997 416 QALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALK-- 491 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~-- 491 (622)
+|...+.+... +.|- ...|......+...|...+|.+.|.... -+.|+ +.+..++..++.+.|+..-|.+
T Consensus 668 ~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~ 741 (799)
T KOG4162|consen 668 EARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRS 741 (799)
T ss_pred HHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHH
Confidence 99988888876 5554 4567777778888999999999999887 56774 7888999999999998777777
Q ss_pred HHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 492 TIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 492 ~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
++..+. .+| +...|..++..+.+.|+.+.|.+.|+.++++++.+|.
T Consensus 742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 888776 444 5889999999999999999999999999999887664
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=6.8e-09 Score=97.90 Aligned_cols=373 Identities=15% Similarity=0.112 Sum_probs=223.9
Q ss_pred HHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChH
Q 006997 173 SMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPD-LVVFLNLILGCAQVGNLF 248 (622)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~ 248 (622)
+..+..|+++.|...|.+... +|.+.|..-..+|...|++++|++=-.+-++ +.|+ ...|.-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 344567899999999877654 5667788888889999999988877777666 3565 557888888888889999
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHH------hhcC-CC------CHHHHHHHHHHHHhc-----
Q 006997 249 LALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVF------DAVL-EK------SVFLWTSMIGGYAQL----- 310 (622)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~-~~------~~~~~~~l~~~~~~~----- 310 (622)
+|...|.+-++.. +.+...++.+..++... . .+.+.| ..+. .| ....|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999988887775 56666777777776111 0 011111 1110 00 011233333222111
Q ss_pred -----CChHHHHHHHHHH-----HhC-------CCCCC----------------------HHHHHHHHHHHhccCChHHH
Q 006997 311 -----GYPSEAVNLFKRL-----LKT-------SVRPN----------------------EATLATTLSACAELGSLSKG 351 (622)
Q Consensus 311 -----~~~~~a~~~~~~m-----~~~-------~~~~~----------------------~~~~~~ll~~~~~~~~~~~a 351 (622)
.+...+...+... ... +..|. ..-...+..+..+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111100 000 01110 01133455555666677777
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCh---hHHHH-------HHHHHHHcCCHHHHHHHH
Q 006997 352 KEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDL---AVWSA-------MINGYAIHGMGDQALNLF 421 (622)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~-------l~~~~~~~~~~~~a~~~~ 421 (622)
.+-+....... .+..-++....+|...|.+..+........+... .-|+. +..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 77777766655 4555566677777777777776666655443211 11222 333556667778888888
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 006997 422 YKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSI-EHYLCLVDLLGRAGRFDLALKTIHEMP--V 498 (622)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 498 (622)
.+... ....|+.. .+....+++....+... -+.|.. .-...-...+.+.|++.+|+..+.+++ .
T Consensus 322 ~kaLt-e~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 322 QKALT-EHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHhh-hhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 87766 44444322 12223344444433332 223332 112223556677788888888888776 3
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 499 EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
+.|...|..-..+|.+.|.+..|+.-.+..++++|+....|..-+.++..+.+|++|.+.|+..++.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44466777777778888888888888888888888888888888888888888888888888776654
No 80
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=5.2e-11 Score=77.44 Aligned_cols=50 Identities=26% Similarity=0.515 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 006997 295 KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAE 344 (622)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 344 (622)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=4.4e-07 Score=87.82 Aligned_cols=385 Identities=13% Similarity=0.076 Sum_probs=234.2
Q ss_pred HHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHH
Q 006997 174 MYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLA 250 (622)
Q Consensus 174 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (622)
.+...|+.++|......... .+.+.|..+.-.+-...++++|++.|......+ +-|...+.-+.-.-++.++++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 34567888888888877665 455778888888888888899998888887753 34556666666666677777777
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC-----CCHHHHHH------HHHHHHhcCChHHHHHH
Q 006997 251 LSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE-----KSVFLWTS------MIGGYAQLGYPSEAVNL 319 (622)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~------l~~~~~~~~~~~~a~~~ 319 (622)
......+.+.. +.....|..+..++.-.|+...|..+.+...+ ++...+.. -.......|..+.|++.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 76666666543 44455666777777777888888777765532 23322221 12345567777777777
Q ss_pred HHHHHhCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCChHHHHHHhccCCCC-
Q 006997 320 FKRLLKTSVRPNEATL-ATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK-CGRINKAKEVFERVPDK- 396 (622)
Q Consensus 320 ~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~- 396 (622)
+..-... ..|...+ ..-...+.+.+++++|..++..+...+ |.+...|-.+..++.+ .+..+....+|....+.
T Consensus 208 L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 208 LLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 7654432 1233322 233445677788888888888887765 3444444455555542 33333333555544321
Q ss_pred -Chh-HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchH---H-HHHHHHHhHHh--c----
Q 006997 397 -DLA-VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVD---D-GLSFFKSMQSN--F---- 464 (622)
Q Consensus 397 -~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~---~-a~~~~~~~~~~--~---- 464 (622)
-.. .-..-++......-.+..-+++..+.+ .|+++--..+.++ |-.....+ + +..+...+... +
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~-Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLS-KGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhh-cCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 000 000000111111122333445555555 6665533222222 22111111 1 11111111100 0
Q ss_pred -C--CCCChhHHH--HHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 465 -G--IEPSIEHYL--CLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 465 -~--~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
+ -+|....|. .++..|-+.|+++.|..+++.+. ..|+ +..|..-...+...|+++.|...++.+.+++-.|..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 0 145555454 57788999999999999999987 5555 445666678888999999999999999999876666
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 538 NYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.-..-+.-..++++.++|.++..+.-+.|.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 666778888999999999999998877664
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.20 E-value=1e-07 Score=93.06 Aligned_cols=220 Identities=14% Similarity=0.204 Sum_probs=142.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 006997 305 GGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRIN 384 (622)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (622)
..+...|+++.|+..|-+... ....+.+......+.+|..+++.+..... ....|..+.+-|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 344555666666655543321 12334455666778888888887766542 2345667778888888888
Q ss_pred HHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhc
Q 006997 385 KAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNF 464 (622)
Q Consensus 385 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 464 (622)
.|+++|-+.- .++-.|..|.++|+|.+|.++-.+... -......|..-..-.-..|++.+|.++|-.+.
T Consensus 783 ~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~---~e~t~~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 783 IAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG---PEATISLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC---chhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 8888886643 345567778888888888877665432 22234455555556677788888887775432
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 006997 465 GIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMAN 544 (622)
Q Consensus 465 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (622)
.|+. .|.+|-+.|..+..+++.++-....-..+...+..-+...|++..|++.|-++ .-|....+
T Consensus 852 --~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavn 916 (1636)
T KOG3616|consen 852 --EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVN 916 (1636)
T ss_pred --CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHH
Confidence 4543 46778888888888888877642333556667777777778888887776643 33445566
Q ss_pred HHHhcCChHHHHHHHHH
Q 006997 545 LFTSAGMWKEAATARGL 561 (622)
Q Consensus 545 ~~~~~g~~~~A~~~~~~ 561 (622)
+|...+.|++|-++-+.
T Consensus 917 myk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 917 MYKASELWEDAYRIAKT 933 (1636)
T ss_pred HhhhhhhHHHHHHHHhc
Confidence 67777777776665543
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.6e-08 Score=94.11 Aligned_cols=248 Identities=11% Similarity=0.067 Sum_probs=161.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc------hhHHHHH
Q 006997 300 WTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESN------RQVQTSL 373 (622)
Q Consensus 300 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 373 (622)
...+..+..+..+++.|++.+....+.. -+..-++....++...|.+......-....+.|...- ......+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445555666666777777776666543 2222333344455666665555555444444432110 1112224
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHH
Q 006997 374 IHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDD 452 (622)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~ 452 (622)
..+|.+.++++.+...|.+...+... -....+....+++++..+...- +.|+. .-...-...+.+.|++..
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHH
Confidence 44677778889999988875532111 1122333445566665555544 66664 223334677889999999
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006997 453 GLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLL 529 (622)
Q Consensus 453 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 529 (622)
|+..|.+++.+ .| |...|....-+|.+.|.+.+|++-.+... ..|+ ...|..-+.++....+++.|.+.|++++
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999865 45 68889999999999999999999888776 3443 5567666777777889999999999999
Q ss_pred ccCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006997 530 TLNPGSTGNYILMANLFTSAGMWKEAATARG 560 (622)
Q Consensus 530 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (622)
+.+|++..+...+..++..+.......++.+
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 9999988888888887776433333344444
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=4.2e-09 Score=102.78 Aligned_cols=192 Identities=16% Similarity=0.150 Sum_probs=126.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHc-----C--CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC----------CCh-hH
Q 006997 339 LSACAELGSLSKGKEIEEYIVLN-----G--LESNRQVQTSLIHMFSKCGRINKAKEVFERVPD----------KDL-AV 400 (622)
Q Consensus 339 l~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~-~~ 400 (622)
...|...+++++|..+|+.+... | .+.-..+++.|..+|.+.|++++|...+++..+ +.+ ..
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 33444455555555555444321 1 111123444455556666666655555544331 122 23
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHhccCchHHHHHHHHHhHHhc----C-CCC-
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEG--LKPD----AVVYTSILSACSHSGMVDDGLSFFKSMQSNF----G-IEP- 468 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p- 468 (622)
++.+...+...+++++|..++++..+... ..++ ..+++.+...|.+.|++++|.+++++++... + ..+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 45566677888888888888887655211 2222 2478899999999999999999999887642 1 122
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--------VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
....++.|...|.+.+++.+|.++|.+.. ..|+ ..++..|...|...|+++.|+++.++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 24567788889999999999999988763 3344 45789999999999999999999999874
No 85
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.2e-06 Score=84.06 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=81.5
Q ss_pred cchhhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHH--HHHHhh--cC
Q 006997 3 RNSTNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTG--LIDMYS--KC 78 (622)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~--~~ 78 (622)
+.+..+|++++|...-.+++..+ +-+...+..-+-++.+.+.++.|..+.+. .+ -..+.+. +=.+|| +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHHc
Confidence 34667888999999888888864 34455677777777788888888744432 22 1111111 234454 67
Q ss_pred CChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 006997 79 SDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGL 129 (622)
Q Consensus 79 ~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 129 (622)
++.++|...++... +.+..+...-...+.+.|++++|+.+|+.+.+.+.
T Consensus 93 nk~Dealk~~~~~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred ccHHHHHHHHhccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 88999999888555 55555677777888899999999999999877643
No 86
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=6.2e-07 Score=90.82 Aligned_cols=373 Identities=12% Similarity=0.096 Sum_probs=212.9
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCch
Q 006997 36 VLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLND 115 (622)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 115 (622)
|..-+-+++++.--...++..++.| ..++.++|+|...|..++.-.+- .+.+ |..-=+..+.-||..+++.
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLke------N~yYDs~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKE------NPYYDSKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hccc------CCcchhhHHhhhhcccCCc
Confidence 3333445566666677777777888 57889999999999887654432 1111 1111122233344433332
Q ss_pred HHHHHHHH-------------------HHHc-CCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCC-CCChhhHhHHHHH
Q 006997 116 EAILVLKE-------------------MWVL-GLELSASTFVSVVSGCSFRQGISMHCCVYKLGLL-NNEIPLANSVMSM 174 (622)
Q Consensus 116 ~A~~~~~~-------------------m~~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 174 (622)
-|.-.|++ .-+. --+.|...|..++.-- -...+++.+.++..+++ ..|+...+..+.+
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~-n~~rRqLiDqVv~tal~E~~dPe~vS~tVkA 993 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEE-NPYRRQLIDQVVQTALPETQDPEEVSVTVKA 993 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhcc-ChHHHHHHHHHHHhcCCccCChHHHHHHHHH
Confidence 22111111 0000 0022444444443221 12345566666666542 2366667777888
Q ss_pred HHhcCChHHHHHHHhhcCC-CCcc-----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChH
Q 006997 175 YAKFGKVNEARSIFDEIGE-TSIV-----SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLF 248 (622)
Q Consensus 175 ~~~~g~~~~A~~~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 248 (622)
+...+-..+-.++++.+.- +++. .-|.++-...+. +..++.+..+++-.-. .|+ +...+...+-++
T Consensus 994 fMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 994 FMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYE 1065 (1666)
T ss_pred HHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHH
Confidence 8888888888888888753 3332 334444444443 3455556665554322 122 233445556677
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006997 249 LALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSV 328 (622)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 328 (622)
+|..+|+.. ..+....+.|+. .-+.++.|.++-++..+ +..|+.+..+-.+.|...+|++-|-+
T Consensus 1066 EAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------ 1129 (1666)
T KOG0985|consen 1066 EAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------ 1129 (1666)
T ss_pred HHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------
Confidence 777777654 333334444433 34566777776666544 35688888888888888888877754
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHH
Q 006997 329 RPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGY 408 (622)
Q Consensus 329 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 408 (622)
.-|+..|..++..+.+.|.+++-.+++..+.+...+|.. -+.|+-+|++.+++.+.++++.. ||..-...+.+-|
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRC 1204 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHH
Confidence 236778888888888888888888888777776544443 46788888888888777766542 4444444455555
Q ss_pred HHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 006997 409 AIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFF 457 (622)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 457 (622)
...|.++.|.-+|..... |..+...+...|+++.|...-
T Consensus 1205 f~~~~y~aAkl~y~~vSN----------~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNVSN----------FAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred hhhhhhHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHh
Confidence 555555555444433222 444444444445555444443
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=8.1e-08 Score=85.34 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=92.3
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccC---CCCChhHHHHHHHHHHHcCCHHHH
Q 006997 341 ACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERV---PDKDLAVWSAMINGYAIHGMGDQA 417 (622)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a 417 (622)
.+...|+...++.....+.+.. +.+...+..-..+|...|++..|+.-+... ...+....-.+-..+...|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3344555556666555555543 445555555566666666666665444332 233444444444555556666666
Q ss_pred HHHHHHhHHhcCCCCCHHH----HHHH---------HHHHhccCchHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHH
Q 006997 418 LNLFYKMQHVEGLKPDAVV----YTSI---------LSACSHSGMVDDGLSFFKSMQSNFGIEPS-----IEHYLCLVDL 479 (622)
Q Consensus 418 ~~~~~~~~~~~~~~p~~~~----~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~ 479 (622)
+...++-.+ +.||... |..+ +......++|.++++..+...+. .|. ...+..+-.+
T Consensus 243 L~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 243 LKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 665555555 5555321 1111 01122334455555555444422 332 1223333444
Q ss_pred HHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 480 LGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
+...|++.+|++...++. ..|+ ..++-.-..+|....+++.|+.-|+++.+.+|++.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 555555555555555544 3333 44444444555555555555555555555555443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=1.2e-08 Score=85.60 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=106.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHH
Q 006997 339 LSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGD 415 (622)
Q Consensus 339 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 415 (622)
.-.|...|+...|..-++++++.+ |.+..++..+...|.+.|+.+.|.+.|++..+ .+..+.|....-+|..|+++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH
Confidence 334444444444444444444443 33344444455555555555555555554432 23344555555556666666
Q ss_pred HHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 006997 416 QALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTI 493 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (622)
+|...|++... ...-|. ..+|..+.-+..+.|+.+.|...|++.... .| .+.....+.+.....|++..|..++
T Consensus 121 eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~---dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 121 EAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL---DPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh---CcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 66666666655 222222 345666666666666666666666666632 34 2445556666666666666666666
Q ss_pred HhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 494 HEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 494 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
++.. ..++..++.-.+......||.+.+-+.-.++..+.|....
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 6654 3345555555555556667766666666666666665443
No 89
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=2.6e-09 Score=101.51 Aligned_cols=248 Identities=18% Similarity=0.115 Sum_probs=171.1
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHH
Q 006997 342 CAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQAL 418 (622)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 418 (622)
+.+.|++..|.-.|+..++.+ |.+...|..|.......++-..|+..+.+..+ .+......|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 345566666666666666655 45566666666666666666666666666554 23445555556677777777777
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHH---------HHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006997 419 NLFYKMQHVEGLKPDAVVYTSIL---------SACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 419 ~~~~~~~~~~~~~p~~~~~~~ll---------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 489 (622)
+.+++-.. ..|... |.... ..+..........++|-++....+..+|+.+...|.-.|.-.|.+++|
T Consensus 374 ~~L~~Wi~---~~p~y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 374 KMLDKWIR---NKPKYV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHH---hCccch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77776654 111100 00000 122222334556666666665546568899999999999999999999
Q ss_pred HHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 490 LKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 490 ~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
++.|+.+. .+| |...||.|+.++.-....++|+..|++++++.|+-..+.+.|+-.|...|.++||.+.|=.++.-..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999987 445 5778999999999999999999999999999999999999999999999999999999987765322
Q ss_pred ccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 006997 568 TKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLL 610 (622)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 610 (622)
+.. -..+.+++ ...+++.|...+.-|.
T Consensus 530 ks~---------------~~~~~~~~-se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 530 KSR---------------NHNKAPMA-SENIWQTLRLALSAMN 556 (579)
T ss_pred ccc---------------ccccCCcc-hHHHHHHHHHHHHHcC
Confidence 110 01112233 5678877776666554
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.4e-06 Score=85.75 Aligned_cols=522 Identities=13% Similarity=0.120 Sum_probs=297.4
Q ss_pred cchhhcCCchhHHHHHHHHHhC-CCCCCccc-HHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC
Q 006997 3 RNSTNNGSFEETLSTYSSMLQT-GVHGNSFT-FPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD 80 (622)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (622)
+.|.++|-...|++.+..+..- ........ =.--+-.+...-.++.+.+.+..|...++..|..+.-.+..-|..+-.
T Consensus 614 qLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg 693 (1666)
T KOG0985|consen 614 QLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLG 693 (1666)
T ss_pred HHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4688999999999888776542 01111110 111233444556788889999999998888888877777777777766
Q ss_pred hhHHHHHhccCCCC-------------CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhh-----
Q 006997 81 FVSSRKVLDEMPVR-------------LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSG----- 142 (622)
Q Consensus 81 ~~~A~~~~~~~~~~-------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~----- 142 (622)
.+.-+++|+..+.- ..|+...--.|.+.++.|++.+..++-++-- + -|+...-..+.-
T Consensus 694 ~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn---~-YdpErvKNfLkeAkL~D 769 (1666)
T KOG0985|consen 694 AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN---C-YDPERVKNFLKEAKLTD 769 (1666)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccc---c-CCHHHHHHHHHhccccc
Confidence 77777777766432 4466667778899999999888777655421 1 111111111111
Q ss_pred -------hh-h------------hhhHHHHHHHH-HhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHH
Q 006997 143 -------CS-F------------RQGISMHCCVY-KLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTT 201 (622)
Q Consensus 143 -------~~-~------------~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 201 (622)
|. + ....+..+-.+ +-+... .+.+...|++ ..-.++..+-+-. .-++...-+.
T Consensus 770 qlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~-~p~VvG~LLD----~dC~E~~ik~Li~-~v~gq~~~de 843 (1666)
T KOG0985|consen 770 QLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSR-TPQVVGALLD----VDCSEDFIKNLIL-SVRGQFPVDE 843 (1666)
T ss_pred cCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcc-cchhhhhhhc----CCCcHHHHHHHHH-HHhccCChHH
Confidence 10 0 00000000000 000000 1111111111 1111111111000 0012233444
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHH-HHH---HHHHH------HHh-----------
Q 006997 202 IIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFL-ALS---MHSLL------LKS----------- 260 (622)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~---~~~~~------~~~----------- 260 (622)
+..-.-+.++..--+-.++.....|. .|..+++.+...|..+++-.+ -.+ .++.. .++
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 55555666677777777777777774 588889999888887765332 111 11111 111
Q ss_pred C--------CCCCchhHHHHHHHHHhcCCHHHHHHHHh-----------hc------CCCCHHHHHHHHHHHHhcCChHH
Q 006997 261 G--------YNNEDPLDNLLVSMYTKCGDLELARRVFD-----------AV------LEKSVFLWTSMIGGYAQLGYPSE 315 (622)
Q Consensus 261 ~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----------~~------~~~~~~~~~~l~~~~~~~~~~~~ 315 (622)
| +...-..|..+.+-+.+..+.+.-.+++. +. ...|+..-+.-+.++...+-+.+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 1 01111123333333344444333333321 11 11255556667778888888888
Q ss_pred HHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcC-----------------------CCCchhHH
Q 006997 316 AVNLFKRLLKTSVRPN--EATLATTLSACAELGSLSKGKEIEEYIVLNG-----------------------LESNRQVQ 370 (622)
Q Consensus 316 a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~ 370 (622)
-+++++++.-.+-..+ ...-+.++-...+ .+...+.++.+++-..+ +..+....
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 8888888765331111 1112222222111 12222222222222111 11222222
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCch
Q 006997 371 TSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMV 450 (622)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 450 (622)
+.|++ .-+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+.. |+..|..+++.+.+.|.+
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcH
Confidence 22222 2244555555544443 34578999999999999999988775543 467799999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 451 DDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 451 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
++-.+++..+.++ .-+|.+. +.|+-+|++.++..+-.+++ ..|+.......+.-|...|.++.|.-+|.
T Consensus 1150 edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---- 1218 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYS---- 1218 (1666)
T ss_pred HHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHH----
Confidence 9999999877765 4555544 46899999999988866554 46788888889999999999999998887
Q ss_pred cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 531 LNPGSTGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 531 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
+.+.|..|+..+...|.+..|...-++.-
T Consensus 1219 ----~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1219 ----NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred ----HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 66778899999999999998887666553
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=1.7e-06 Score=84.85 Aligned_cols=78 Identities=5% Similarity=-0.043 Sum_probs=43.6
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCC
Q 006997 34 PLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACL 113 (622)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 113 (622)
...+..|.....++++..+-+ ..|.+.-...-.+.++++...|+-+.|-++-.. ..| + -+-|+.|.+.|.
T Consensus 561 e~aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s----dgd--~-laaiqlyika~~ 630 (1636)
T KOG3616|consen 561 EEAIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKES----DGD--G-LAAIQLYIKAGK 630 (1636)
T ss_pred HHHHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhccc----cCc--c-HHHHHHHHHcCC
Confidence 345556666666777666544 334333334445566666677777776554221 112 1 234667777887
Q ss_pred chHHHHHH
Q 006997 114 NDEAILVL 121 (622)
Q Consensus 114 ~~~A~~~~ 121 (622)
+.+|.+..
T Consensus 631 p~~a~~~a 638 (1636)
T KOG3616|consen 631 PAKAARAA 638 (1636)
T ss_pred chHHHHhh
Confidence 77776653
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.08 E-value=7e-07 Score=90.57 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=109.8
Q ss_pred chhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhcc
Q 006997 11 FEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 11 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 90 (622)
...|+..|-+..+..+.. ...|..+...|+...|...|.+.|+.+.+.. ..+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 455555555554432221 2246667777776667777777777776665 44556666777777777777777766333
Q ss_pred CCCC-CCCcch--HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhh
Q 006997 91 MPVR-LRSVVS--WNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPL 167 (622)
Q Consensus 91 ~~~~-~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (622)
..+. +.-... |....-.|...++..+|+.-|+...+. .|.|...
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~---------------------------------dPkD~n~ 598 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT---------------------------------DPKDYNL 598 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC---------------------------------CchhHHH
Confidence 2221 111222 222333455666666666666666542 3338888
Q ss_pred HhHHHHHHHhcCChHHHHHHHhhcCCCCcch-HHH--HHHHHHcCCChhHHHHHHHHHHH
Q 006997 168 ANSVMSMYAKFGKVNEARSIFDEIGETSIVS-WTT--IIGGYVNVGNVNEAFGLCNQMRR 224 (622)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--li~~~~~~~~~~~a~~~~~~m~~ 224 (622)
|..+..+|.++|++..|.+.|.+...-++.. |.. .....+..|.+.+++..+.....
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999998876533322 222 22334567888888888877643
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.3e-08 Score=93.72 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=157.0
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHH
Q 006997 275 MYTKCGDLELARRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKG 351 (622)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 351 (622)
-+.-.|++..++.-.+.-... +......+.+++...|+++.++. ++.... .|.......+...+...++.+.+
T Consensus 10 n~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 10 NQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 355567777777555411111 22344556778888888776543 333333 66666666666555544455555
Q ss_pred HHHHHHHHHcCCC-CchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 006997 352 KEIEEYIVLNGLE-SNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGL 430 (622)
Q Consensus 352 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (622)
..-++........ .+..+......++...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~ 160 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ---I 160 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---c
Confidence 4444433322222 23333344445677789999999988876 4566667778889999999999999999987 5
Q ss_pred CCCHHHHHHHHHHHh----ccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHh
Q 006997 431 KPDAVVYTSILSACS----HSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQV 504 (622)
Q Consensus 431 ~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 504 (622)
..|.. ...+..++. -.+.+.+|..+|+++..+ ..+++.+.+.+..++...|++++|.+++++.. .+.++.+
T Consensus 161 ~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 55543 333444332 234688899999998754 35677788888888888888888888888765 3344666
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHccCCCCC
Q 006997 505 WAPLLSACMKHHNV-ELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 505 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 536 (622)
+..++......|+. +.+.+.+.++....|+++
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777777777776 667778888777888654
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=1.3e-06 Score=77.95 Aligned_cols=307 Identities=10% Similarity=0.096 Sum_probs=189.1
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH---HHHHcCCChhHHHHHHHHHHHCCCCCCHhHHH-HHHH
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTII---GGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFL-NLIL 239 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~ 239 (622)
++.-.-.+.+.+...|++.+|+.-|....+-|...|.++. ..|...|+...|+.=+....+ .+||-..-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 3333445667777788899999999888887777666654 567788888888887777776 467643321 1233
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 006997 240 GCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNL 319 (622)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 319 (622)
.+.+.|.++.|..-|+.+++... +..+ ...++.+.--.++-.. ....+..+...|+...|++.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHH
Confidence 45677888888888887776642 1110 0111111111111111 11223334455666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC
Q 006997 320 FKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KD 397 (622)
Q Consensus 320 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~ 397 (622)
...+++.. +.+...+..-..+|...|++..|+.=++...+.. ..+...+-.+-..+...|+.+.++...++..+ ||
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 66665542 3355555555556666666666655555554443 22333344455555566666666666555543 22
Q ss_pred hh----HHHHH---------HHHHHHcCCHHHHHHHHHHhHHhcCCCCCH--H---HHHHHHHHHhccCchHHHHHHHHH
Q 006997 398 LA----VWSAM---------INGYAIHGMGDQALNLFYKMQHVEGLKPDA--V---VYTSILSACSHSGMVDDGLSFFKS 459 (622)
Q Consensus 398 ~~----~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~---~~~~ll~~~~~~g~~~~a~~~~~~ 459 (622)
.. .|..+ +......++|.++++..+...+ ..|.. . .+..+-.++...|++.+|++...+
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 11 11111 2234567888999998888887 45542 2 344566678889999999999999
Q ss_pred hHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 460 MQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 460 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
+. .+.|+ +.++.--..+|.-...+++|+.-|+.+.
T Consensus 333 vL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 333 VL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 98 56775 8888888999999999999999999886
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=3.8e-07 Score=90.52 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=190.0
Q ss_pred HHHHHhcCChHHHHHHHhhcCC--CCc-chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh----c-
Q 006997 172 MSMYAKFGKVNEARSIFDEIGE--TSI-VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCA----Q- 243 (622)
Q Consensus 172 ~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~- 243 (622)
...+...|++++|++.++.-.. .|. .........+.+.|+.++|..++..+.+. .|+...|...+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccc
Confidence 3456788999999999987655 343 34556678899999999999999999987 477777666666555 1
Q ss_pred -cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHH-HHHHHHhhcCCCCH-HHHHHHHHHHHhcCChHHHHHHH
Q 006997 244 -VGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLE-LARRVFDAVLEKSV-FLWTSMIGGYAQLGYPSEAVNLF 320 (622)
Q Consensus 244 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~ 320 (622)
..+.+....+++.+...- |.......+.-.+.....+. .+...+.....+++ .+|+.+-..|.......-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 235677788888776553 32222222221122222232 23344444444444 56777766666555555555555
Q ss_pred HHHHhC----C----------CCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 006997 321 KRLLKT----S----------VRPNE--ATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRIN 384 (622)
Q Consensus 321 ~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (622)
...... + -.|+. .++..+...|...|+++.|.++.+.++++. |..+..|..-...|-+.|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 554432 1 12333 244555667788899999999999888875 445778888888899999999
Q ss_pred HHHHHhccCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH--------HHHHHHHHHhccCchHHH
Q 006997 385 KAKEVFERVPDK---DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV--------VYTSILSACSHSGMVDDG 453 (622)
Q Consensus 385 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--------~~~~ll~~~~~~g~~~~a 453 (622)
+|.+.++....- |-..-+..+..+.++|+.++|.+++..... .+..|-.. -..-...+|.+.|++..|
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr-~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTR-EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC-CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999988877753 445555667788889999999999888877 55444221 124456678888998888
Q ss_pred HHHHHHhHHh
Q 006997 454 LSFFKSMQSN 463 (622)
Q Consensus 454 ~~~~~~~~~~ 463 (622)
++.|..+.+.
T Consensus 325 Lk~~~~v~k~ 334 (517)
T PF12569_consen 325 LKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHH
Confidence 8877776643
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=5.7e-07 Score=78.49 Aligned_cols=383 Identities=11% Similarity=0.032 Sum_probs=237.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhcc
Q 006997 169 NSVMSMYAKFGKVNEARSIFDEIGET---SIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLN-LILGCAQV 244 (622)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~ 244 (622)
++.+-.+.+..++++|++++....++ +......+..+|....++..|-+.++++-.. .|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 55566667778888888888766553 4556777788888888888888888888664 455444432 23455567
Q ss_pred CChHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 006997 245 GNLFLALSMHSLLLKSGYNNEDP--LDNLLVSMYTKCGDLELARRVFDAVLE-KSVFLWTSMIGGYAQLGYPSEAVNLFK 321 (622)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 321 (622)
+.+..|..+...|.+. +... +...-....-..+++..+..++++.+. .+..+.+.......+.|+++.|.+-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7788888887776542 1111 111111123356788888888888874 556666666666778889999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCch----------------------------hHHHHH
Q 006997 322 RLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNR----------------------------QVQTSL 373 (622)
Q Consensus 322 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~l 373 (622)
...+-+---....|+..+ +..+.++++.|.+...+++++|+...+ ..+|.-
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 887754333445565444 455678888888888888877653211 112222
Q ss_pred HHHHHhcCChHHHHHHhccCCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhcc
Q 006997 374 IHMFSKCGRINKAKEVFERVPD-----KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHS 447 (622)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 447 (622)
...+.+.|+++.|.+.+-.|+. -|++|...+.-. -..+++.+..+-+.-+.. +.| -..||..++-.|++.
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~---~nPfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ---QNPFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh---cCCCChHHHHHHHHHHhhh
Confidence 3345678999999999999984 366776554322 124556666665666555 445 357899999999999
Q ss_pred CchHHHHHHHHHhHHhcCC-CCChhHHHHHHHHH-HhcCChHHHHHHHHhCCCCCcHHhHHHHHHH--HHhcCC---HHH
Q 006997 448 GMVDDGLSFFKSMQSNFGI-EPSIEHYLCLVDLL-GRAGRFDLALKTIHEMPVEVQAQVWAPLLSA--CMKHHN---VEL 520 (622)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~ 520 (622)
.-++-|-.++-+-... .. -.+...|+ |++++ ...-..++|.+-++.+...-....-...+.. -...++ ...
T Consensus 324 eyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred HHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888888887543211 00 11333343 33333 3445677777766654311001111111111 111222 233
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 521 GEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
+++-|++.+++.- .+....++.|.+..++.-+.+.|+.-.+-.
T Consensus 402 ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 402 AVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 4555666666431 366788899999999999999999877643
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=1.8e-08 Score=92.85 Aligned_cols=245 Identities=14% Similarity=0.042 Sum_probs=164.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 006997 305 GGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRIN 384 (622)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (622)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.+.. +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886665 222221223334556677888888876443 3333333 566666655555444435556
Q ss_pred HHHHHhccCC-CC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 006997 385 KAKEVFERVP-DK----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKS 459 (622)
Q Consensus 385 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 459 (622)
.+..-+++.. ++ +..........+...|++++|++++.+. .+.......+.++.+.++++.|.+.++.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666665443 22 2222222234566679999999887542 3456677788899999999999999999
Q ss_pred hHHhcCCCCChhHHHHHHHH----HHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 460 MQSNFGIEPSIEHYLCLVDL----LGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 460 ~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
|. .+..|.. ...++.+ +.-.+.+.+|..+|+++. ..+++.+++.++.+....|++++|+++++++++.+|
T Consensus 157 ~~---~~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQ---QIDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HH---CCSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HH---hcCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 98 4455533 3333333 333457999999999986 456788889999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCh-HHHHHHHHHhhhC
Q 006997 534 GSTGNYILMANLFTSAGMW-KEAATARGLMDDR 565 (622)
Q Consensus 534 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 565 (622)
+++.+..+++-+..-.|+. +.+.+.+.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999998 6778888888764
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.5e-06 Score=76.03 Aligned_cols=293 Identities=12% Similarity=0.060 Sum_probs=161.4
Q ss_pred CCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHH-H
Q 006997 26 VHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNS-I 104 (622)
Q Consensus 26 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-l 104 (622)
+.....-+.+++..+.+..++..|.+++..-.+.. +.+......|...|-...++..|-..++++....|...-|.. -
T Consensus 6 ~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 6 AQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred ccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 33334445666666666667777777766655553 234555555666666677777777777776654444444432 2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHH
Q 006997 105 ISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEA 184 (622)
Q Consensus 105 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 184 (622)
...+.+.+.+.+|+++...|... |+. +...++ .-.......+++..+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L------------------~~~~lq------------LqaAIkYse~Dl~g~ 131 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PAL------------------HSRVLQ------------LQAAIKYSEGDLPGS 131 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHH------------------HHHHHH------------HHHHHhcccccCcch
Confidence 23455566777777777666431 110 111100 001122346778888
Q ss_pred HHHHhhcCC-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 006997 185 RSIFDEIGE-TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYN 263 (622)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (622)
..+.++.+. .+..+.+...-...+.|+++.|.+-|+...+-+--.....|+..+ +..+.++.+.|.+...+++++|+.
T Consensus 132 rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 132 RSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 888888874 555666666666778888998888888877654333445666554 444678888888888888888754
Q ss_pred CCchh----------------------------HHHHHHHHHhcCCHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhc
Q 006997 264 NEDPL----------------------------DNLLVSMYTKCGDLELARRVFDAVLEK-----SVFLWTSMIGGYAQL 310 (622)
Q Consensus 264 ~~~~~----------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~ 310 (622)
..+.. +|.-...+.+.|+.+.|.+.+..|+.+ |++|...+.-. -..
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-ccc
Confidence 32221 111222234455555555555555433 34443333211 112
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 006997 311 GYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIE 355 (622)
Q Consensus 311 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 355 (622)
+++....+-+.-+...+. ....||..++-.||+..-++.|-.++
T Consensus 290 ~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 333333333444443322 33445555555555555555555444
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.8e-05 Score=78.91 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHccCCC------CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 517 NVELGEYAAKNLLTLNPG------STGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
|....+.-...+++ .|. ....|-.++..+....+|..|-+.++.|..+.+
T Consensus 1306 D~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred hHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 44444444444444 232 235788899999999999999999999987654
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=1.5e-06 Score=84.97 Aligned_cols=257 Identities=12% Similarity=0.006 Sum_probs=133.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006997 306 GYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSAC----AELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCG 381 (622)
Q Consensus 306 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (622)
.+...|++++|.+.+++..+.. +.+...+.. ...+ ...+..+.+.+.+... ....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 3445566666666666665542 112222221 1111 1223333333333321 1111222233344555666677
Q ss_pred ChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHhccCchHHHHHH
Q 006997 382 RINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA--VVYTSILSACSHSGMVDDGLSF 456 (622)
Q Consensus 382 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~ 456 (622)
++++|.+.+++..+ .+...+..+..++...|++++|...+++........|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777766553 234455666667777777777777777766511111222 2344566677777777777777
Q ss_pred HHHhHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-HhCC-CCCc---HHhHHHHHHHHHhcCCHHHHHHHHH
Q 006997 457 FKSMQSNFGIEPSIEHY-L--CLVDLLGRAGRFDLALKT--I-HEMP-VEVQ---AQVWAPLLSACMKHHNVELGEYAAK 526 (622)
Q Consensus 457 ~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~ 526 (622)
++++.......+..... + .+...+...|..+.+.++ + .... ..+. .........++...|+.+.|...++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 77765221111111111 1 222333334432222222 1 1111 0011 1122245556677888888888888
Q ss_pred HHHccCC---------CCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 527 NLLTLNP---------GSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 527 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
.+....- .........+.++...|++++|.+.+......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7755221 13455667788889999999999999988764
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=6.1e-08 Score=77.78 Aligned_cols=120 Identities=11% Similarity=0.030 Sum_probs=101.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
+......+...+...|++++|.++|+-.. ..| +...|..|+.++...|++++|+..|.++..++|++|.++..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34556667778889999999999999876 444 5778999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 006997 547 TSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLLE 611 (622)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 611 (622)
...|+.++|++.|+..+...- .+|+..++.++....+..+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 999999999999998876321 367777777777666666543
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.8e-06 Score=83.59 Aligned_cols=355 Identities=16% Similarity=0.159 Sum_probs=201.7
Q ss_pred CchhHHHHH--HHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHc-C--------CCCC
Q 006997 64 DAFVQTGLI--DMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVL-G--------LELS 132 (622)
Q Consensus 64 ~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~--------~~p~ 132 (622)
|..+-.+++ +.|+.-|+.+.|.+-.+.++ +-..|..|.+.|.+.++++-|.-.+-.|... | ..|+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 455555555 36778899999988888776 5567999999999998888887777666431 1 1121
Q ss_pred h-hhHHHHHhh-hh-hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCC-CcchHHHHHHHHHc
Q 006997 133 A-STFVSVVSG-CS-FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGET-SIVSWTTIIGGYVN 208 (622)
Q Consensus 133 ~-~t~~~ll~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 208 (622)
. ..-.+++.. +. .+.|..+++...+. ..|-+.|...|.+++|.++-+.--+- =..+|..-...+-.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 1 111111111 11 66677777665543 33446677778888887776543221 12355555666666
Q ss_pred CCChhHHHHHHHHHH----------HCC---------CCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhH
Q 006997 209 VGNVNEAFGLCNQMR----------RMS---------VTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLD 269 (622)
Q Consensus 209 ~~~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (622)
.++.+.|++.|++.. ... -.-|...|.......-..|+.+.|+.+|....+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 777777777776531 110 012333444444444555666666666665543 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-----
Q 006997 270 NLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAE----- 344 (622)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----- 344 (622)
-+++...|-.|+.++|-++-++ ..|..+...|.+.|-..|++.+|...|.+.+. |...|+.|-.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 3455555666666666666543 33556677788888888888888888876542 2222222211
Q ss_pred ----------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--------------CChhH
Q 006997 345 ----------LGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--------------KDLAV 400 (622)
Q Consensus 345 ----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------~~~~~ 400 (622)
..+.-.|.++|++. |. -...-+..|-+.|.+.+|+++--+-.+ .|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 11222333333332 11 123345567788888887775433221 25555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHh---------cC----------------CCCCH----HHHHHHHHHHhccCchH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHV---------EG----------------LKPDA----VVYTSILSACSHSGMVD 451 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~----------------~~p~~----~~~~~ll~~~~~~g~~~ 451 (622)
.+.-..-++.+.++++|..++-...+. .| -.|+. .....+...|.+.|.+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 555555556666666666555443321 01 11222 23556667788888888
Q ss_pred HHHHHHHHh
Q 006997 452 DGLSFFKSM 460 (622)
Q Consensus 452 ~a~~~~~~~ 460 (622)
.|.+-|.++
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 777766554
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=4.3e-06 Score=85.07 Aligned_cols=538 Identities=11% Similarity=0.007 Sum_probs=287.3
Q ss_pred CchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhc-CCCCchhHHHHHHHhhcCCChhHHHHHh
Q 006997 10 SFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVG-FQQDAFVQTGLIDMYSKCSDFVSSRKVL 88 (622)
Q Consensus 10 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 88 (622)
+...|...|++.-+.+.. +..........+++..+++.|..+.-...+.. ...-...|..+.-.|.+.++...|+.-|
T Consensus 507 Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 456788888888775322 44567778899999999999988833222221 0111223334455677888999999999
Q ss_pred ccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhh---hh---hhhhHHHHHHHHHhC--
Q 006997 89 DEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSG---CS---FRQGISMHCCVYKLG-- 159 (622)
Q Consensus 89 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~---~~---~~~~~~~~~~~~~~~-- 159 (622)
+...+. +.|...|..+..+|.+.|++..|+++|.+... +.|+. +|.....+ |. ...+...+..++...
T Consensus 586 QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 586 QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 987655 67788999999999999999999999988765 44543 23222222 22 334444433333221
Q ss_pred ---CCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH-HHHHcCCC----hhHHHHHHHHHHHCCCCCCH
Q 006997 160 ---LLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTII-GGYVNVGN----VNEAFGLCNQMRRMSVTPDL 231 (622)
Q Consensus 160 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~~~~~~~----~~~a~~~~~~m~~~~~~p~~ 231 (622)
...+-..++-.+...+...|-...|..+|+.-. ..+...+ ...+.... ...|..+|-+.. .. .|+.
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~ 736 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNM 736 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHH
Confidence 111112222222233333333334444443321 1111111 11000000 112223333322 11 2333
Q ss_pred hHHHHHHHHHhccCCh---H---HHHHHHHHHHHhCCCCCchhHHHHHHHHHh----c----CCHHHHHHHHhhcC---C
Q 006997 232 VVFLNLILGCAQVGNL---F---LALSMHSLLLKSGYNNEDPLDNLLVSMYTK----C----GDLELARRVFDAVL---E 294 (622)
Q Consensus 232 ~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~~~a~~~~~~~~---~ 294 (622)
.....+..-.-+.+.. + .+.+.+-.-. .+..+..+|..|+..|.+ . .+...|...+.... .
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a 814 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA 814 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh
Confidence 3333333222222222 1 1111111111 112223344334333332 1 12335666666543 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 006997 295 KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLI 374 (622)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (622)
.+...||.|.-. ...|.+.-+...|-+-.... +....+|..+.-.+....+++.|...|....... |.+...+-...
T Consensus 815 nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~A 891 (1238)
T KOG1127|consen 815 NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEA 891 (1238)
T ss_pred ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHH
Confidence 466788877665 55567777777776655543 3355677777777888888998888888777654 33444444333
Q ss_pred HHHHhcCChHHHHHHhccC-----C---CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHh--------cCCCCCHHHHH
Q 006997 375 HMFSKCGRINKAKEVFERV-----P---DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHV--------EGLKPDAVVYT 438 (622)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~p~~~~~~ 438 (622)
..-...|+.-++..+|..- . .++..-|-........+|+.++-+...+++..- .+.+.+...|.
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYA 971 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHH
Confidence 3444567666777776541 1 134445555555556677666554444443220 12333456777
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYL----CLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMK 514 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 514 (622)
..+...-+.+.+..|.+...+...-...+-+...|+ .+.+.+...|.++.|..-+.......+..+...-+.. .-
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ff 1050 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FF 1050 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HH
Confidence 777777777777777776666542211123444444 3445566778888777776665544444443333333 34
Q ss_pred cCCHHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 515 HHNVELGEYAAKNLLTLNPGSTG---NYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 515 ~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
.++++++.+.|++++.+...+.. ....++.+....|..+.|...+-+..
T Consensus 1051 kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1051 KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 57889999999998886544444 23344555566677777776554443
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=8.7e-08 Score=83.37 Aligned_cols=148 Identities=11% Similarity=0.095 Sum_probs=116.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG 484 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 484 (622)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCC
Confidence 3467888888887555433322 11 0122366778888888887754 2447888999999999999
Q ss_pred ChHHHHHHHHhCC-C-CCcHHhHHHHHHHH-HhcCC--HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006997 485 RFDLALKTIHEMP-V-EVQAQVWAPLLSAC-MKHHN--VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 485 ~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (622)
++++|...+++.. . +.+...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999886 3 44577788888864 67677 599999999999999999999999999999999999999999
Q ss_pred HHhhhCCC
Q 006997 560 GLMDDRRL 567 (622)
Q Consensus 560 ~~~~~~~~ 567 (622)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99987544
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=7.6e-08 Score=87.74 Aligned_cols=180 Identities=10% Similarity=0.016 Sum_probs=110.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-h---hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH----
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPD--KD-L---AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV---- 435 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---- 435 (622)
....+..+...+...|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+ ..|+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR---LHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCchHH
Confidence 344555566666666777777777665543 21 1 2445556666666777777777777665 334321
Q ss_pred HHHHHHHHHhcc--------CchHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHH
Q 006997 436 VYTSILSACSHS--------GMVDDGLSFFKSMQSNFGIEPSI-EHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWA 506 (622)
Q Consensus 436 ~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 506 (622)
++..+..++... |++++|.+.++.+... .|+. ..+..+..... .... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR---L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH---H--------HHHHH
Confidence 344444444433 5566666666666643 3432 12211111100 0000 0 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 507 PLLSACMKHHNVELGEYAAKNLLTLNPGST---GNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 507 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
.+...+...|++++|+..++++++..|+++ ..+..++.++.+.|++++|..+++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456678889999999999999999887654 689999999999999999999999887643
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.92 E-value=6.4e-05 Score=71.74 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCChHHHHHHhc
Q 006997 313 PSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLES-NRQVQTSLIHMFSKCGRINKAKEVFE 391 (622)
Q Consensus 313 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (622)
.+...+.++++...-..--..+|...+....+..-+..|..+|.++.+.+..+ ++.++++++.-|+. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44455555555443222223345556666666666666777777766665444 55666666665543 55666666666
Q ss_pred cCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHhHHh
Q 006997 392 RVPD--KD-LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA--VVYTSILSACSHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 392 ~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 463 (622)
--.+ +| +.--...++-+...|+-..+..+|++... .++.|+. ..|..++.--+.-|+...+.++-+++...
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~-s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT-SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh-ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4432 22 23333445555666666666667776666 4555542 45666666666666666666666655544
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=2.6e-08 Score=81.92 Aligned_cols=108 Identities=10% Similarity=-0.022 Sum_probs=87.5
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 455 SFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 455 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
.++++.. .+.|+ .+..+...+...|++++|...|+... .+.+...|..++.++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455555 23454 35567788888999999999998876 34457788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 533 PGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
|+++.++..++.++.+.|++++|...|+...+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998877433
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=2.6e-08 Score=81.94 Aligned_cols=123 Identities=9% Similarity=-0.010 Sum_probs=103.5
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 418 LNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 418 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
..++++..+ +.|+. +.....++...|++++|...|+.+.. +.| +...+..+..++.+.|++++|+..|+++
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345666666 66664 44567788899999999999999884 355 6788889999999999999999999998
Q ss_pred C--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 497 P--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 497 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
. .+.+...+..++.++...|+.++|+..+++++++.|+++..+...+.+...
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 7 455678899999999999999999999999999999999999888887654
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=9.6e-08 Score=91.16 Aligned_cols=248 Identities=14% Similarity=0.075 Sum_probs=173.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 006997 306 GYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINK 385 (622)
Q Consensus 306 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (622)
-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3456677777777777776653 2244566666666677777777777777777665 4566667777777777777777
Q ss_pred HHHHhccCCCCCh-hHHHHHH---------HHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHH
Q 006997 386 AKEVFERVPDKDL-AVWSAMI---------NGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 386 A~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
|..+++......+ ..|.... ..+..........++|-++....+..+|+.....|.-.|-..|++++|+.
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 7777765421100 0000000 11111223345556666655535655777788888888889999999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 456 FFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 456 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
.|+.++. +.| |...||.|...++...+.++|+.-|.++. ..|. +.++..|+-.|...|.+++|...|-.++.+.
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999994 477 67889999999999999999999999987 6777 6688899999999999999999999999876
Q ss_pred CC-----CC-----chHHHHHHHHHhcCChHHHHHH
Q 006997 533 PG-----ST-----GNYILMANLFTSAGMWKEAATA 558 (622)
Q Consensus 533 p~-----~~-----~~~~~l~~~~~~~g~~~~A~~~ 558 (622)
+. .. .+|..|=.++.-+++.|-+.++
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 54 11 3666666677777777654443
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=1.5e-07 Score=98.48 Aligned_cols=199 Identities=16% Similarity=0.183 Sum_probs=167.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCCC--------ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH
Q 006997 364 ESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK--------DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV 435 (622)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 435 (622)
|.+...|-..+......++.++|.+++++.... -...|.++++.-...|.-+...++|+++.+ +--.-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq---ycd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ---YCDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH---hcchHH
Confidence 455677777888888899999999999887641 235788888877788888899999999987 322345
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---cHHhHHHHHHH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV---QAQVWAPLLSA 511 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~ 511 (622)
.|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-++|..++.++. .-| ........+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 688899999999999999999999998876 667889999999999999999999998875 222 35566677777
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
-.+.||.+++..+|+-.+.-.|.-.+.|..+++.-.+.|+.+.++.+|+++...++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999988665
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=4e-06 Score=93.13 Aligned_cols=324 Identities=12% Similarity=0.003 Sum_probs=204.4
Q ss_pred hccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcC----CC----C--H--HHHHHHHHHHHh
Q 006997 242 AQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVL----EK----S--V--FLWTSMIGGYAQ 309 (622)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~----~--~--~~~~~l~~~~~~ 309 (622)
...|+++.+...+..+.......+..........+...|+++++...+.... .. + . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3456666666666554221112223333445556677889999888876542 11 1 1 122223445667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhc
Q 006997 310 LGYPSEAVNLFKRLLKTSVRPNE----ATLATTLSACAELGSLSKGKEIEEYIVLNGL---ES--NRQVQTSLIHMFSKC 380 (622)
Q Consensus 310 ~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~ 380 (622)
.|++++|...+++..+.-...+. .....+...+...|+++.|...++....... .+ .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999987763111121 2334555567788999999998887764311 11 123445567778889
Q ss_pred CChHHHHHHhccCCC-------CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhc-CCCCC--HHHHHHHHHHHhc
Q 006997 381 GRINKAKEVFERVPD-------KD----LAVWSAMINGYAIHGMGDQALNLFYKMQHVE-GLKPD--AVVYTSILSACSH 446 (622)
Q Consensus 381 ~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~--~~~~~~ll~~~~~ 446 (622)
|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ...+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999888776442 11 1234445566777899999999998876511 11222 2344556667788
Q ss_pred cCchHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CcH----HhHHHHHHHHHhc
Q 006997 447 SGMVDDGLSFFKSMQSNFGIEPSIEHY-----LCLVDLLGRAGRFDLALKTIHEMPVE--VQA----QVWAPLLSACMKH 515 (622)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~ 515 (622)
.|+++.|...++++............+ ...+..+...|+.+.|..++...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999998875421111111111 11224455689999999998776511 111 1134566678889
Q ss_pred CCHHHHHHHHHHHHccCC------CCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 516 HNVELGEYAAKNLLTLNP------GSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
|+.++|...++++++... ....++..++.++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999987421 22346778899999999999999999998864
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=2.2e-05 Score=76.78 Aligned_cols=192 Identities=15% Similarity=0.065 Sum_probs=95.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----Ch--hHHHHHHHHHHH
Q 006997 338 TLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK-----DL--AVWSAMINGYAI 410 (622)
Q Consensus 338 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~ 410 (622)
+...+...|+++.|...++...+.. +.+...+..+..+|...|++++|...+++.... +. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344555556666666665555544 333445555566666666666666666554431 11 123345566667
Q ss_pred cCCHHHHHHHHHHhHHhcCC-CCCHHHH-H--HHHHHHhccCchHHHHHH--HHHhHHhcCCCCC--hhHHHHHHHHHHh
Q 006997 411 HGMGDQALNLFYKMQHVEGL-KPDAVVY-T--SILSACSHSGMVDDGLSF--FKSMQSNFGIEPS--IEHYLCLVDLLGR 482 (622)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~~~p~--~~~~~~l~~~~~~ 482 (622)
.|++++|..++++... ... .+..... . .++.-+...|..+.+.+. +...... ..+.. .......+.++..
T Consensus 199 ~G~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 199 RGDYEAALAIYDTHIA-PSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred CCCHHHHHHHHHHHhc-cccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 7777777777777654 111 1111111 1 223333333433222222 1111111 00111 1111245566677
Q ss_pred cCChHHHHHHHHhCC--CCC---c------HHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 483 AGRFDLALKTIHEMP--VEV---Q------AQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~--~~~---~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
.|+.++|..+++.+. ... . .........++...|+.+.|.+.+..++.+.
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788888888887764 111 1 1111223334567889999998888887653
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=2.5e-05 Score=86.88 Aligned_cols=361 Identities=11% Similarity=0.026 Sum_probs=222.6
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcch--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHH
Q 006997 173 SMYAKFGKVNEARSIFDEIGETSIVS--WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLA 250 (622)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (622)
..+...|++.+|.............. ...........|+++.+...+..+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34455566666665555544332111 1112234455677777777766652211112222233344455677899999
Q ss_pred HHHHHHHHHhCCC------CC--chhHHHHHHHHHhcCCHHHHHHHHhhcCC----CCH----HHHHHHHHHHHhcCChH
Q 006997 251 LSMHSLLLKSGYN------NE--DPLDNLLVSMYTKCGDLELARRVFDAVLE----KSV----FLWTSMIGGYAQLGYPS 314 (622)
Q Consensus 251 ~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~ 314 (622)
...+......--. +. ......+...+...|++++|...+++... .+. .+.+.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 9998887653111 11 11222334556788999999999887532 121 34566777788899999
Q ss_pred HHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHhcCC
Q 006997 315 EAVNLFKRLLKTSV---RPN--EATLATTLSACAELGSLSKGKEIEEYIVLN----GLES---NRQVQTSLIHMFSKCGR 382 (622)
Q Consensus 315 ~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~ 382 (622)
+|...+++.....- .+. ..++..+...+...|+++.|...+++.... +... ....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999988765211 111 234455666788899999999998876543 2211 22334556667778899
Q ss_pred hHHHHHHhccCCC------C--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHhccCc
Q 006997 383 INKAKEVFERVPD------K--DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVY-----TSILSACSHSGM 449 (622)
Q Consensus 383 ~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~ll~~~~~~g~ 449 (622)
+++|...+.+... + ....+..+...+...|++++|...+.+.............+ ...+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 9999998887642 1 12234445667788999999999998886511111111111 112234455889
Q ss_pred hHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCc-HHhHHHHHHHHHhcCCH
Q 006997 450 VDDGLSFFKSMQSNFGIEPS---IEHYLCLVDLLGRAGRFDLALKTIHEMP-------VEVQ-AQVWAPLLSACMKHHNV 518 (622)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~l~~~~~~~~~~ 518 (622)
.+.|...+...... ..... ...+..+..++...|++++|...+++.. ...+ ..+...+..++...|+.
T Consensus 669 ~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 669 KEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred HHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999998775521 11111 1113456778899999999999998874 1111 23556677788899999
Q ss_pred HHHHHHHHHHHccCCC
Q 006997 519 ELGEYAAKNLLTLNPG 534 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~ 534 (622)
++|...+.+++++...
T Consensus 748 ~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 748 SEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999997653
No 114
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=5e-06 Score=77.90 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=101.3
Q ss_pred HHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCh----
Q 006997 415 DQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRA---GRF---- 486 (622)
Q Consensus 415 ~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~---- 486 (622)
++++.+++++.+ ..|+ ..+|.....++...|+++++++.++++++. + .-+...|+....++.+. |..
T Consensus 125 ~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 125 NKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred HHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccH
Confidence 566777777776 5564 567777777777888888888888888754 1 22556666555555443 222
Q ss_pred HHHHHHHHhCC--CCCcHHhHHHHHHHHHhc----CCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC----------
Q 006997 487 DLALKTIHEMP--VEVQAQVWAPLLSACMKH----HNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG---------- 550 (622)
Q Consensus 487 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------- 550 (622)
++++++..++. .+.+...|+.+...+... +...+|...+.+++..+|+++.++..|+++|....
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 45666665554 344577888888888773 34567889999999999999999999999998743
Q ss_pred --------ChHHHHHHHHHhh
Q 006997 551 --------MWKEAATARGLMD 563 (622)
Q Consensus 551 --------~~~~A~~~~~~~~ 563 (622)
..++|.++++.+.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hccccccccHHHHHHHHHHHH
Confidence 2366777777773
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=1e-06 Score=90.98 Aligned_cols=136 Identities=9% Similarity=0.048 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHH
Q 006997 397 DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYL 474 (622)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 474 (622)
++..+-.|.....+.|++++|+.+++...+ +.||. .....+..++.+.+.+++|...+++.... .| +.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 466777777778888888888888888877 77774 45677777888888888888888887743 55 455566
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 538 (622)
.+..++.+.|++++|..+|+++. ..|+ ...|.++..++...|+.++|...|+++++........
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 77777888888888888888876 3333 6677778888888888888888888888765433333
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=1.9e-06 Score=74.43 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCC
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHN 517 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 517 (622)
+-..+...|+-+....+...... ..+-+......++....+.|++.+|+..+.+.. .++|...|+.+..+|-+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 33344444444444444444331 112233334444445555555555555555443 34444455555555555555
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 518 VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
++.|...|.+++++.|+++.+..+++..|.-.|++++|..++....
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555554443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=1.3e-06 Score=86.00 Aligned_cols=189 Identities=17% Similarity=0.176 Sum_probs=145.3
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 006997 362 GLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSIL 441 (622)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll 441 (622)
+.+|-...-..+...+...|-...|..+|+++. .|.-.+.+|+..|+..+|..+..+-.+ -+||+..|..++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhh
Confidence 345555666677888888899999999988754 566678888888888888888887765 678888888888
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHH
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 519 (622)
+......-+++|+++.+....+ .-..+.....+.++++++.+.++... .+-...+|-.++.+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 8877777788888887765422 11223333445788888888888654 3445778888888888888888
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 520 LGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
.|.+.|...+.++|++...|+++.-+|.+.|+..+|...++...+-+
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 88889988888999888889999888999998888888888887754
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.65 E-value=4e-07 Score=74.71 Aligned_cols=108 Identities=22% Similarity=0.269 Sum_probs=86.1
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 456 FFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 456 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
.++++. ...| +......+...+...|++++|...++.+. .+.+...|..+...+...|++++|...++++++.+
T Consensus 5 ~~~~~l---~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLL---GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHH---cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444 3355 34556667777888888888888888775 34457778888888889999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 533 PGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
|.++..+..++.+|...|++++|.+.++...+.+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999887743
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=3.1e-06 Score=73.70 Aligned_cols=153 Identities=12% Similarity=0.155 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHH
Q 006997 374 IHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDD 452 (622)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~ 452 (622)
+-.|...|+++.+....+.+..+. ..+...++.+++...+++..+ ..| |...|..+...|...|+++.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 345667777766655543332221 011235667788888888776 555 46789999999999999999
Q ss_pred HHHHHHHhHHhcCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006997 453 GLSFFKSMQSNFGIEP-SIEHYLCLVDLL-GRAGR--FDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAK 526 (622)
Q Consensus 453 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 526 (622)
|...|++..+ +.| +...+..+..++ ...|+ .++|.+++++.. ..| +...+..++..+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999884 355 677788888864 67777 599999999987 444 57788899999999999999999999
Q ss_pred HHHccCCCCCchHH
Q 006997 527 NLLTLNPGSTGNYI 540 (622)
Q Consensus 527 ~~~~~~p~~~~~~~ 540 (622)
+++++.|.+..-+.
T Consensus 169 ~aL~l~~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHhhCCCCccHHH
Confidence 99999886655443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=2e-06 Score=74.31 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 006997 402 SAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLG 481 (622)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 481 (622)
..+-..+...|+-+....+..+... ....|.......+....+.|++..|+..++++.. .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 3344556666776666666666543 1222334455566777777888888888777763 33556777777778888
Q ss_pred hcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006997 482 RAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (622)
+.|++++|..-|.+.. ...++...+.++..+.-.||++.|+.++..+....+.++.+-..++.+....|++++|..+-
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888877777665 34456667788888888888888888888888887878888888888888888888887766
Q ss_pred HHh
Q 006997 560 GLM 562 (622)
Q Consensus 560 ~~~ 562 (622)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.5e-06 Score=84.00 Aligned_cols=217 Identities=15% Similarity=0.091 Sum_probs=158.6
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC--CCChhHHHHHHH
Q 006997 329 RPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVP--DKDLAVWSAMIN 406 (622)
Q Consensus 329 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~ 406 (622)
+|-...-..+...+...|-...|..+++.+. .+...+.+|...|+..+|..+..+-. +||+..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333344455666677777777888777653 34567788888888888888776554 356777777777
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGR 485 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 485 (622)
......-+++|.++++.... . .-..+.....+.++++++.+.|+.-.+ +.| -..+|-.+.-+..+.++
T Consensus 466 v~~d~s~yEkawElsn~~sa-r-------A~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA-R-------AQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hccChHHHHHHHHHhhhhhH-H-------HHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhh
Confidence 66655567777777766554 1 112222223346888888888887663 344 56778888888888889
Q ss_pred hHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 486 FDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 486 ~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
+..|.+.|.... ..|+ ...|+++..+|.+.++-.+|...++++++-+-++..+|.+..-+..+-|.+++|.+.+.++.
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 998888888776 5555 66799999999999999999999999998888788888888888889999999999998887
Q ss_pred hC
Q 006997 564 DR 565 (622)
Q Consensus 564 ~~ 565 (622)
.-
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 63
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.59 E-value=1.3e-05 Score=84.56 Aligned_cols=227 Identities=14% Similarity=0.154 Sum_probs=169.4
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCC---chhHHHHHHHHHHhcCChHHHHHHhccCCCC-C-hhHHHHH
Q 006997 331 NEATLATTLSACAELGSLSKGKEIEEYIVLN-GLES---NRQVQTSLIHMFSKCGRINKAKEVFERVPDK-D-LAVWSAM 404 (622)
Q Consensus 331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l 404 (622)
+...|..-|......++.+.|.++.+++... ++.- -..+|.++++....-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3445666777778888888888888887654 2221 2356677777777778788888899888763 3 3578888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC---ChhHHHHHHHHHH
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP---SIEHYLCLVDLLG 481 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 481 (622)
...|.+.+++++|.++++.|.++.+ -....|...+..+.+.++-+.|..++.++.+- -| ........+..-.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHh
Confidence 8999999999999999999997444 45677888999999999999999999998853 34 3555666777778
Q ss_pred hcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCCchHHHHHHHHHh-cCChHHHH
Q 006997 482 RAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTL--NPGSTGNYILMANLFTS-AGMWKEAA 556 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~-~g~~~~A~ 556 (622)
+.|+.+.+..+|+... .+.....|+.++..-.++|+.+.++.+|++++++ .|.....++-.---|.+ .|+-..+.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 8999999999999876 4446888999999999999999999999999885 45555544443333433 46666555
Q ss_pred HHHHHh
Q 006997 557 TARGLM 562 (622)
Q Consensus 557 ~~~~~~ 562 (622)
.+-.++
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 444443
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=3.1e-05 Score=81.12 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCC
Q 006997 334 TLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGM 413 (622)
Q Consensus 334 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (622)
.+..+..+|.+.|+.+++..+|+++.+.. +.++.+.|.+...|... ++++|.+++.+. +..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44455555555555555555555555555 44555555555555555 555555555442 222444445
Q ss_pred HHHHHHHHHHhHHhcCCCCC---------------------HHHHHHHHHHHhccCchHHHHHHHHHhH
Q 006997 414 GDQALNLFYKMQHVEGLKPD---------------------AVVYTSILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~p~---------------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
+..+.++|.++.. ..|+ ..++..+-..|...++++++..+++.+.
T Consensus 185 ~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 185 YVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred chHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 5555555555554 3332 2233333444555556666666666665
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=3.6e-06 Score=76.71 Aligned_cols=181 Identities=14% Similarity=0.069 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-hh---H
Q 006997 330 PNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESN---RQVQTSLIHMFSKCGRINKAKEVFERVPD--KD-LA---V 400 (622)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~ 400 (622)
.....+..+...+...|+++.|...++.+.+.. +.+ ...+..+..+|.+.|++++|...++++.+ |+ .. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 355677788888999999999999999998765 222 24667788999999999999999998864 32 22 3
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChh
Q 006997 401 WSAMINGYAIH--------GMGDQALNLFYKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIE 471 (622)
Q Consensus 401 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 471 (622)
+..+..++... |+.++|.+.|+++.+ ..|+.. ....+..... . ..... .
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~~~----~------~~~~~---------~ 167 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRMDY----L------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHHHH----H------HHHHH---------H
Confidence 55555566554 778999999999998 566643 2222111100 0 00000 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-VEV----QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
....+...|.+.|++++|+..+++.. ..| ....+..++.++...|++++|...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11246677888999999999988875 222 246788888999999999999998888776655
No 125
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=1e-05 Score=75.83 Aligned_cols=184 Identities=11% Similarity=0.095 Sum_probs=136.3
Q ss_pred HHhcCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcC-CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCch-
Q 006997 377 FSKCGRINKAKEVFERVPDK---DLAVWSAMINGYAIHG-MGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMV- 450 (622)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~- 450 (622)
+...++.++|.....++... +..+|+.-..++...| ++++++..++++.+ ..|+ ..+|..-...+.+.|..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~---~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE---DNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH---HCCcchHHhHHHHHHHHHcCchh
Confidence 34456677777777766643 3345555555566666 57999999999987 5554 45666655556666653
Q ss_pred -HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc---CC----HH
Q 006997 451 -DDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKH---HN----VE 519 (622)
Q Consensus 451 -~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~----~~ 519 (622)
+++..+++++.+. .| +...|+....++.+.|+++++++.++++. ...+..+|+.......+. |. .+
T Consensus 124 ~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 6788899888844 55 68888888899999999999999999987 345577888877766554 22 35
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 006997 520 LGEYAAKNLLTLNPGSTGNYILMANLFTS----AGMWKEAATARGLMDDRR 566 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 566 (622)
.++....+++..+|+|.++|..++.++.. .++..+|.+......+.+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 78888889999999999999999999988 456677888888766543
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.51 E-value=2.3e-06 Score=81.70 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=105.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACM 513 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 513 (622)
....++..+...++++.|+.+++++.+. .|+ ....++..+...++-.+|++++.+.. .+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456677778889999999999999855 455 44458888888899999999998876 3345666777777888
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 514 KHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
..++.+.|..+.++++++.|.+...|..|+.+|.+.|++++|+-.+..++
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999886
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00013 Score=63.34 Aligned_cols=249 Identities=14% Similarity=0.057 Sum_probs=141.8
Q ss_pred HHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH-
Q 006997 276 YTKCGDLELARRVFDAVLE--KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGK- 352 (622)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~- 352 (622)
+.-.|.+..++..-..... .++..-.-+.++|...|++...+.- +.. |-.|....+..+.......++.+.-.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3444666666554443321 2333334455667777765443322 222 22444444444444444444433333
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC
Q 006997 353 EIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP 432 (622)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 432 (622)
.+.+.+.......+......-...|...|++++|.+...... +....-.=+..+.+..+.+-|.+.+++|.+ + -
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-d 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---I-D 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c-c
Confidence 334444443333333333444556778888888888887733 222222233455667778888888888876 3 2
Q ss_pred CHHHHHHHHHHHhc----cCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHH
Q 006997 433 DAVVYTSILSACSH----SGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWA 506 (622)
Q Consensus 433 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 506 (622)
+..|.+.|..++.+ .+.+.+|.-+|+++..+ .+|++.+.+....++...|++++|..++++.. ...++.++.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 34566666665543 34577788888888743 47777777777777777788888888877765 334455665
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHccCCCCC
Q 006997 507 PLLSACMKHHNV-ELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 507 ~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~ 536 (622)
.++-.....|.. +.-.+...++....|+++
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 665555555543 445566666666677544
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0023 Score=65.45 Aligned_cols=521 Identities=13% Similarity=0.075 Sum_probs=267.1
Q ss_pred hhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhh--ccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhH
Q 006997 6 TNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACA--NINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVS 83 (622)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (622)
...+++..|+....++.++ .|+. .|..++.++. +.|..++|..+++.....+ ..|..+...+-..|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 4567888999988888774 4444 3666666654 7889999998888876665 3477888899999999999999
Q ss_pred HHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh--------------hhhhH
Q 006997 84 SRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS--------------FRQGI 149 (622)
Q Consensus 84 A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~--------------~~~~~ 149 (622)
|..+++...+..|+..-...+..+|+|-+++.+-.+.--+|-+ ...-+.+.|-++++... ...+.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999999987767766666777788888877553333333332 23335566666665543 33444
Q ss_pred HHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhh-c----CCCCcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006997 150 SMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDE-I----GETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRR 224 (622)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 224 (622)
.....+++.+-......-...-...+...|+.++|..++.. . ..-+...-|.-+..+...+++.+..++..++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44444444431110111122223445566777777777732 1 112333344556666677777777777777766
Q ss_pred CCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC-CHHHHHHH
Q 006997 225 MSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK-SVFLWTSM 303 (622)
Q Consensus 225 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l 303 (622)
.| +|. |...... +++.+.....+|- .. .+...+..+...+...+.... ....|-+-
T Consensus 255 k~--~Dd--y~~~~~s------------v~klLe~~~~~~a-~~------~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~ 311 (932)
T KOG2053|consen 255 KG--NDD--YKIYTDS------------VFKLLELLNKEPA-EA------AHSLSKSLDECIEKAQKNIGSKSRGPYLAR 311 (932)
T ss_pred hC--Ccc--hHHHHHH------------HHHHHHhcccccc-hh------hhhhhhhHHHHHHHHHHhhcccccCcHHHH
Confidence 54 222 2222221 1111111111111 11 011122233333322222211 11122222
Q ss_pred HHH---HHhcCChHHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHhccC-ChHHHHHHHHHH-------H
Q 006997 304 IGG---YAQLGYPSEAVNLFKRLLKTSVRP-------------NEATLATTLSACAELG-SLSKGKEIEEYI-------V 359 (622)
Q Consensus 304 ~~~---~~~~~~~~~a~~~~~~m~~~~~~~-------------~~~~~~~ll~~~~~~~-~~~~a~~~~~~~-------~ 359 (622)
+.. +-.-|+.+++...|-+- -|-.| +......++..+.... +.....+.+... .
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~r 389 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLR 389 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHH
Confidence 222 22335555544333221 11111 1111222333322211 111111111110 0
Q ss_pred HcC----CCCch-hHH-HHHHHHHHhcCChHHHHHHhc-cCCCCCh---hHHHHHHHHHHHcCCHH---HHHHHHHHhHH
Q 006997 360 LNG----LESNR-QVQ-TSLIHMFSKCGRINKAKEVFE-RVPDKDL---AVWSAMINGYAIHGMGD---QALNLFYKMQH 426 (622)
Q Consensus 360 ~~~----~~~~~-~~~-~~l~~~~~~~~~~~~A~~~~~-~~~~~~~---~~~~~l~~~~~~~~~~~---~a~~~~~~~~~ 426 (622)
-.| .+.+. ..| ..++..|.+. .+-...++- ++...+. .+-+.|+..+.+.++.. +|+-+++.-..
T Consensus 390 l~G~~~~l~ad~i~a~~~kl~~~ye~g--ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt 467 (932)
T KOG2053|consen 390 LLGLYEKLPADSILAYVRKLKLTYEKG--LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT 467 (932)
T ss_pred HhhccccCChHHHHHHHHHHHHHHhcc--ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 001 11110 111 1111112111 000000000 0000011 24567778888888765 45555555544
Q ss_pred hcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHH
Q 006997 427 VEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQ 503 (622)
Q Consensus 427 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 503 (622)
..| |..+-..+++.|+-.|-+..|.+.|+.+.-+ .+..|...|. +...+...|++..+...+.... ...+..
T Consensus 468 ---~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~k 542 (932)
T KOG2053|consen 468 ---KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLK 542 (932)
T ss_pred ---cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhh
Confidence 344 4556677888999999999999999988655 5666544442 4456667788888888877654 121211
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTLNPG----STGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
-..-++....+.|.+.+-.+...---.++-. -..+-....+.+...++.++-...++.|.
T Consensus 543 E~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 543 ETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 1122333334667776665554433223221 12334456677788899998888888886
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=3e-05 Score=73.24 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=100.9
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcC
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAG 484 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 484 (622)
.+...|++++|+..++.+.. -.|| +.........+...++..+|.+.++++.. ..|+ ....-.+..+|.+.|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 44567788888888888776 5555 44455556678888888888888888874 3665 455556778888888
Q ss_pred ChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 485 RFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 485 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
++.+|+.++++.. .+.|+..|..|..+|...|+..++.. ..++.|.-.|++++|...+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888888776 45567788888888888888666554 4456677788888888888877
Q ss_pred hhCC
Q 006997 563 DDRR 566 (622)
Q Consensus 563 ~~~~ 566 (622)
.++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 7654
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.7e-05 Score=65.48 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=96.3
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 487 (622)
+-..|++++|+++++...+ .. +.|..++..=+...-..|..-+|++-+.+..+. +..|.+.|.-+.+.|...|+++
T Consensus 96 lEa~~~~~~A~e~y~~lL~-dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLE-DD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HHHhhchhhHHHHHHHHhc-cC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHH
Confidence 4456788888888888876 22 334566666666666677777888888888764 4678899999999999999999
Q ss_pred HHHHHHHhCC-CCCc-HHhHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 488 LALKTIHEMP-VEVQ-AQVWAPLLSACMKH---HNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 488 ~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
+|.-.++++. ..|. +..+..+...+... .+.+.|.+.|.++++++|.+...+.-
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 9999999986 4554 55566666655443 47788999999999999965554443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=0.00019 Score=68.05 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=106.6
Q ss_pred HHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcC
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHH 516 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~ 516 (622)
..-.+...|.+++|+..++.+... .| |+..+....+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 334455679999999999999854 55 56666677899999999999999999987 5666 667888999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 517 NVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
++++|+..++..+..+|+++..|..|+.+|..+|+..+|...+-....
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887654
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.7e-07 Score=52.96 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=16.6
Q ss_pred CCCCCchhHHHHHHHHHhcCCHHHHHHHHhhc
Q 006997 261 GYNNEDPLDNLLVSMYTKCGDLELARRVFDAV 292 (622)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (622)
|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 133
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=4.4e-07 Score=52.62 Aligned_cols=32 Identities=41% Similarity=0.623 Sum_probs=20.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 465 GIEPSIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 465 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=3.9e-05 Score=79.59 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=110.8
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CC-hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHH
Q 006997 362 GLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KD-LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVY 437 (622)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~ 437 (622)
..+.+...+..|.....+.|++++|..+++.+.+ || ......+..++.+.+++++|+..+++... ..|+. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHH
Confidence 3456678888888888999999999999988774 43 45666778888899999999999999887 77775 456
Q ss_pred HHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHH
Q 006997 438 TSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLL 509 (622)
Q Consensus 438 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 509 (622)
..+..++.+.|++++|..+|+++... .+-+...+..+..++...|+.++|...|++.. ..|....|+.++
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 66677888899999999999998853 12347788888889999999999999998876 445555554443
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.42 E-value=0.00011 Score=77.16 Aligned_cols=243 Identities=9% Similarity=0.033 Sum_probs=142.4
Q ss_pred HHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC--CCc-chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 006997 153 CCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE--TSI-VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTP 229 (622)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 229 (622)
.+..-..+.|.+...+..|+..|...|++++|.++.+...+ |+. ..|-.+...+.+.++.+.+..+ .+.
T Consensus 19 ~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l------ 90 (906)
T PRK14720 19 TRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI------ 90 (906)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh------
Confidence 33334455666888899999999999999999999987654 333 3444444467777776665554 222
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHH
Q 006997 230 DLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK---SVFLWTSMIGG 306 (622)
Q Consensus 230 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~ 306 (622)
.......++....-+...+.+. ..+...+..+..+|-+.|+.++|..+++++.+- |+.+.|.+...
T Consensus 91 ---------~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~ 159 (906)
T PRK14720 91 ---------DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATS 159 (906)
T ss_pred ---------hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 2222223333333333333332 233346666777777777777777777776543 56677777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHH
Q 006997 307 YAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKA 386 (622)
Q Consensus 307 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (622)
|... +.++|.+++.+.... +...+++..+.++|..+.... +.+...+-.+.......-..
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~--- 219 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREF--- 219 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhcc---
Confidence 7777 777777777766543 444556667777777776654 22332222222222111111
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHh
Q 006997 387 KEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACS 445 (622)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~ 445 (622)
..-+.++-.+-..|...++++++..+++.+.+ ..|+ .....-++.+|.
T Consensus 220 --------~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 --------TRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK 268 (906)
T ss_pred --------chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH
Confidence 11233444455666677777777777777776 4443 445555665554
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=2.9e-06 Score=74.89 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=87.2
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCH
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNV 518 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~ 518 (622)
.-..+.+++.+|+..|.+++ .+.| |+.-|..-..+|.+.|.++.|++-.+... +.|. ..+|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34567788899999998888 4566 45566677888999999999999888877 5555 66899999999999999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006997 519 ELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWK 553 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (622)
++|++.|+++++++|++......|-.+-.+.+..+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999877777766655544444
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=1.4e-05 Score=66.21 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=69.0
Q ss_pred cCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcH----HhHHHHHHHHHhcCCHHH
Q 006997 447 SGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQA----QVWAPLLSACMKHHNVEL 520 (622)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~ 520 (622)
.++...+...++.+...++-.| .....-.+...+...|++++|...|+.+. ..|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665421111 11222234566666777777777777665 22332 234445666677777777
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 521 GEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
|+..++.. .-.+-.+..+..+|++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777553 223334566777788888888888888887754
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=1.2e-05 Score=66.00 Aligned_cols=115 Identities=9% Similarity=0.023 Sum_probs=91.1
Q ss_pred HHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 006997 420 LFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP- 497 (622)
Q Consensus 420 ~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 497 (622)
.++++.. ..|+. .....+...+...|++++|.+.++.+... -+.+...+..+...+...|++++|..++++..
T Consensus 5 ~~~~~l~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG---LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc---CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554 56654 45666777888899999999999998754 13467788888999999999999999998875
Q ss_pred -CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 006997 498 -VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 498 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 539 (622)
.+.+...+..+...+...|++++|...++++++++|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344577788888899999999999999999999999776543
No 139
>PRK15331 chaperone protein SicA; Provisional
Probab=98.35 E-value=1.1e-05 Score=65.26 Aligned_cols=100 Identities=12% Similarity=0.016 Sum_probs=83.8
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 465 GIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 465 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
|++++ .........-+...|++++|..+|+-+. ..-+..-|..|..++...+++++|+..|..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44443 2333344555678899999999998765 34457778999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 006997 542 MANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.+.+|...|+.++|+..|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.32 E-value=0.0037 Score=60.23 Aligned_cols=210 Identities=13% Similarity=0.135 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---ChHHHHHHhccCCC----CChhHHHHHHHHHHHcCCHHHHHHHH
Q 006997 349 SKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCG---RINKAKEVFERVPD----KDLAVWSAMINGYAIHGMGDQALNLF 421 (622)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (622)
+++..+++.....-...+...|..+.+---..- ..+...+.++++.. .-..+|..++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 444555555544322233344443333221111 24455555555542 23357888888888888899999999
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---
Q 006997 422 YKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--- 497 (622)
Q Consensus 422 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 497 (622)
.++.+ .+..+ +.....+++.-++. ++..-|.++|+.-..++| -++.--...++-+...++-..|..+|++..
T Consensus 390 ~kaR~-~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 390 KKARE-DKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHhh-ccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99998 77777 56677777777664 788999999998886643 233444577888899999999999999986
Q ss_pred CCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----CchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 498 VEVQ--AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS----TGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 498 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
..|+ ...|..++.--..-||...+.++-++.....|.+ ...-....+-|.=++.+..-..-++.+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2333 5689999999999999999999999887766622 123344555666666655444444433
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.31 E-value=1.3e-06 Score=61.59 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=60.2
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC-ChHHHHHHHHHhhhC
Q 006997 501 QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG-MWKEAATARGLMDDR 565 (622)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 565 (622)
+...|..++..+...|++++|+..|+++++++|+++.++..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678899999999999999999999999999999999999999999999 799999999988763
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=8.7e-05 Score=63.89 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=126.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVD 478 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 478 (622)
|..++-+....|+.+.|...++.+.. .+ |.+. .-..-.--+-..|++++|+++|+.+.++ .| |..++.--+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~--~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRD--RF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH--hC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 33444556677889999999999886 23 5433 2222222345678999999999999976 45 5666666666
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC---ChH
Q 006997 479 LLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG---MWK 553 (622)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 553 (622)
..-..|+.-+|++-+.+.. +..|...|..+...|...|+++.|.-++++++=.+|-++-.+..+++++.-.| +..
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 7777888888888887765 67889999999999999999999999999999999999999999999987776 566
Q ss_pred HHHHHHHHhhhCCC
Q 006997 554 EAATARGLMDDRRL 567 (622)
Q Consensus 554 ~A~~~~~~~~~~~~ 567 (622)
-|+++|.+..+-..
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 68889988877544
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=7.6e-06 Score=62.37 Aligned_cols=93 Identities=22% Similarity=0.210 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006997 473 YLCLVDLLGRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG 550 (622)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (622)
+..++..+...|++++|...++++. . +.+...+..++..+...+++++|...+++++...|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556777778888888888888765 2 3334667778888888899999999999999999988889999999999999
Q ss_pred ChHHHHHHHHHhhhC
Q 006997 551 MWKEAATARGLMDDR 565 (622)
Q Consensus 551 ~~~~A~~~~~~~~~~ 565 (622)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999887653
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=6.7e-07 Score=65.93 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=56.8
Q ss_pred cCChHHHHHHHHhCC-CCC---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH
Q 006997 483 AGRFDLALKTIHEMP-VEV---QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATA 558 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (622)
.|+++.|+.+++++. ..| +...|..++.++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 466677777777665 222 445566678888888888888888888 777777777777888888888888888888
Q ss_pred HHH
Q 006997 559 RGL 561 (622)
Q Consensus 559 ~~~ 561 (622)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.26 E-value=1.1e-05 Score=64.49 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHH
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS---TGNYILMA 543 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 543 (622)
++..++..+.+.|++++|.+.++++. ..|+ ...+..++.++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666667777777777776664 2222 3355567777778888888888888888877764 45677778
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCC
Q 006997 544 NLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.++.+.|++++|.+.++.+.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 888888888888888887776533
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.25 E-value=2.5e-06 Score=59.21 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
++..+...|++++|+..++++++..|+++.++..++.++...|++++|...|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788899999999999999999999999999999999999999999999999876543
No 147
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00025 Score=61.63 Aligned_cols=243 Identities=14% Similarity=0.036 Sum_probs=157.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 006997 304 IGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRI 383 (622)
Q Consensus 304 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (622)
++-+.-.|.+..++..-....... -+...-.-+-++|...|++.... ..+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence 455566788887777665544332 34444445566777666653322 2222222 33333334344333334443
Q ss_pred HHHHH-HhccCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 006997 384 NKAKE-VFERVPDK----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFK 458 (622)
Q Consensus 384 ~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 458 (622)
++-.. +.+.+..+ +......-...|+..+++++|++....... ......=...+.+..+.+-|.+.++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~-------lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN-------LEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 23333322 222223334578899999999999876322 2223333345667788999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 459 SMQSNFGIEPSIEHYLCLVDLLG----RAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 459 ~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
+|.+ +. +..+.+.|..++. -.++..+|.-+|+++. .+|++.+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~---id-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQ---ID-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHc---cc-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 9983 22 4456665666554 4567999999999997 67888899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHH-HHHHhh
Q 006997 533 PGSTGNYILMANLFTSAGMWKEAAT-ARGLMD 563 (622)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 563 (622)
|++|++..+++-+-...|...++.+ .+.++.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999999988888898877654 444443
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.23 E-value=7.9e-05 Score=61.63 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC--hhHHH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA----VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS--IEHYL 474 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 474 (622)
|..++..+ ..++...+...++.+.+ -.|+. .....+...+...|++++|...|+.+... ...|+ .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 33444444 47888888888888887 23432 33445667788899999999999998865 22222 22344
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVELGEYAAKNLL 529 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 529 (622)
.|...+...|++++|+..++... ....+..+...+..+...|+.++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 57788889999999999998865 23335566778888999999999999998864
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=2.2e-05 Score=75.53 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=53.2
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCH
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNV 518 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~ 518 (622)
..+...|+++.|+..|+++++. .| +...|..+..+|.+.|++++|+..++++. ..| +...|..++.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3444555666666666665532 33 34445555555555555555555555554 222 344455555555555555
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 519 ELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
++|+..++++++++|+++.+...+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555555555555544444333
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.3e-06 Score=50.03 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh
Q 006997 99 VSWNSIISAHSRACLNDEAILVLKEMWVLGLELSA 133 (622)
Q Consensus 99 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 133 (622)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.5e-06 Score=48.98 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 006997 98 VVSWNSIISAHSRACLNDEAILVLKEMWVLGLEL 131 (622)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 131 (622)
+.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=8.1e-05 Score=71.27 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhcc
Q 006997 369 VQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHS 447 (622)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~ 447 (622)
...+|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+ ..| +...+..-...|.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~---~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK---ENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhc
Confidence 3345566666678888888888888877777777788888888888888888888886 344 455566666678888
Q ss_pred CchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 448 GMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
++++.|+.+.+++.. ..| +..+|..|+.+|.+.|++++|+..++.++
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999998884 466 46688889999999999999999998887
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00027 Score=65.35 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=109.6
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHH-----------
Q 006997 406 NGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHY----------- 473 (622)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----------- 473 (622)
.++...|+.++|.+.--...+ ..++ ......-..++-..++.+.+...|++.+ .+.|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilk---ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILK---LDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHh---cccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 355677888888887777766 3333 2222222234556778888888888877 446653221
Q ss_pred --HHHHHHHHhcCChHHHHHHHHhCC-CC-----CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 474 --LCLVDLLGRAGRFDLALKTIHEMP-VE-----VQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 474 --~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
..=.+-..+.|.+.+|.+.+.+.. +. |+...|.....+..+.|+..+|+.-.+.+++++|.-...+...+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 112233467888999999998876 33 3455566666677788999999999999999999888888899999
Q ss_pred HHhcCChHHHHHHHHHhhhC
Q 006997 546 FTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~ 565 (622)
+...++|++|.+-+++..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888664
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=9e-05 Score=66.20 Aligned_cols=105 Identities=19% Similarity=0.132 Sum_probs=89.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 467 EPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKH---HNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 467 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
+-|.+.|..|...|...|+...|..-|.+.. .++++..+..+..++... .+..++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4478999999999999999999999998876 455677777777766543 45788999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCccCC
Q 006997 542 MANLFTSAGMWKEAATARGLMDDRRLTKEP 571 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 571 (622)
|+..+...|++.+|...++.|.+.....+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999986664443
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.07 E-value=0.00035 Score=57.10 Aligned_cols=152 Identities=13% Similarity=0.074 Sum_probs=117.1
Q ss_pred HHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 006997 409 AIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDL 488 (622)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 488 (622)
.+.=+++...+-..+-.+ ..|+...-..+..+....|+..+|...|++.... -+..|....-.+.++....+++.+
T Consensus 67 ~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 67 QQKLDPERHLREATEELA---IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHH
Confidence 333344444433333333 6777777778889999999999999999998853 334578888888899999999999
Q ss_pred HHHHHHhCC-CCC---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 489 ALKTIHEMP-VEV---QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 489 A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
|...+++.. .+| ++.....+..++...|..+.|+..|+.++.-.| ++......+..+.++|+.++|..-+..+.+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999998864 222 234455678889999999999999999999999 688888899999999999999877766655
Q ss_pred C
Q 006997 565 R 565 (622)
Q Consensus 565 ~ 565 (622)
.
T Consensus 222 ~ 222 (251)
T COG4700 222 T 222 (251)
T ss_pred H
Confidence 3
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=7.1e-06 Score=48.54 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=29.0
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPD 230 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 230 (622)
.+||++|.+|++.|++++|.++|.+|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.04 E-value=4.9e-05 Score=65.08 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMAN 544 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (622)
...+..+...+...|++++|...++++. ..|+ ...+..++..+...|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445566666777777777777777664 2222 3567788888889999999999999999999998888889999
Q ss_pred HHHhcCC
Q 006997 545 LFTSAGM 551 (622)
Q Consensus 545 ~~~~~g~ 551 (622)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988776
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=9.5e-05 Score=58.97 Aligned_cols=105 Identities=12% Similarity=0.128 Sum_probs=69.3
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLL 509 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 509 (622)
++......+.+.|++++|.+.|+.+.+.+.-.+ ....+..+..++.+.|++++|.+.++++. ..|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555666667777777777777765421111 13345556777777777777777777664 2233 44577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7888888888888888888888887665443
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=1.8e-05 Score=70.00 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=79.9
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006997 477 VDLLGRAGRFDLALKTIHEMP-VE-VQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKE 554 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (622)
.+-+.+.+++++|+..|.+++ .. .|.+.|..=..+|.+.|.++.|++-.+.++.++|....+|..|+.+|..+|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345678899999999999987 44 4566677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCC
Q 006997 555 AATARGLMDDRR 566 (622)
Q Consensus 555 A~~~~~~~~~~~ 566 (622)
|++.|++.++-+
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 999999887643
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.024 Score=58.40 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCH---HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 504 VWAPLLSACMKHHNV---ELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
+-+.|+..+.+.+|. -+|+.+++..+...|.|+..-..++.+|.-.|-+..|.+.|+.+--+.+
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 345677888888765 5688888888999999999999999999999999999999998865544
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.03 E-value=8.3e-06 Score=57.28 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 513 MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999999887643
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.03 E-value=0.00026 Score=71.31 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
..+..+.......|++++|...++++++++| +...|..+|.++...|+.++|.+.+++..+.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444445555555555555555555 3455555555555556666555555555443
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=6.8e-05 Score=72.21 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=81.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 006997 404 MINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLG 481 (622)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 481 (622)
-...+...|++++|+..|+++.+ ..|+ ...|..+..+|...|++++|+..++++... .| +...|..+..+|.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHH
Confidence 34566788999999999999998 6675 567888888999999999999999999843 55 5778888999999
Q ss_pred hcCChHHHHHHHHhCC-CCCcHHhHHHHH
Q 006997 482 RAGRFDLALKTIHEMP-VEVQAQVWAPLL 509 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 509 (622)
..|++++|+..|+++. ..|+.......+
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999986 555544443333
No 164
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.99 E-value=1.2e-05 Score=47.11 Aligned_cols=33 Identities=18% Similarity=0.485 Sum_probs=25.3
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTP 229 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 229 (622)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.99 E-value=2.1e-05 Score=56.16 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=53.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 509 LSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 509 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
...+.+.++++.|.++++++++++|+++..+...+.++.+.|++++|.+.++...+.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999999999999999999999999999999987544
No 166
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=5.3e-05 Score=64.61 Aligned_cols=94 Identities=14% Similarity=-0.056 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMAN 544 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (622)
...+..++..+...|++++|+..++++. ..|+ ..+|..+...+...|++++|+..+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556677777888888888888888774 2222 3478889999999999999999999999999999998999998
Q ss_pred HHH-------hcCChHHHHHHHHHhh
Q 006997 545 LFT-------SAGMWKEAATARGLMD 563 (622)
Q Consensus 545 ~~~-------~~g~~~~A~~~~~~~~ 563 (622)
++. +.|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887766666543
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.92 E-value=0.00033 Score=59.95 Aligned_cols=128 Identities=14% Similarity=0.134 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 006997 399 AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD--AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLC 475 (622)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 475 (622)
..+..+...+...|++++|...|++..+ ....+. ...+..+..++.+.|++++|...+++..+. .| +...+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALK-LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 3455555566666777777777776665 221111 245556666666667777777766666632 33 3444455
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006997 476 LVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGM 551 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (622)
+..+|...|+...+..-++... ..+++|.++++++++++|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5555555555444433222211 12677888888888888865 5555555555443
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.91 E-value=2.4e-05 Score=54.27 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=49.6
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
+...+...|++++|++.|+++. ..| +...|..++.++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888999999988876 344 577888899999999999999999999999999764
No 169
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.04 Score=55.66 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=98.0
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 418 LNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 418 ~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
+++.+......|......+.+--+.-+...|+..+|.++-.+.+ -||...|.--+.+++..+++++-+++-+...
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 34444444434444455566666777778899999998887765 6888889888999999999999988888765
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 498 VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 498 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
.+..|.-+..+|.+.|+.++|.+++-+.-.+ .....+|.+.|++.+|.+.--+-
T Consensus 743 ---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 743 ---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred ---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 3667888899999999999999888755322 16788999999999998765433
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.86 E-value=0.023 Score=52.63 Aligned_cols=271 Identities=16% Similarity=0.173 Sum_probs=177.3
Q ss_pred cCCHHHHHHHHhhc---CCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCChHHH
Q 006997 279 CGDLELARRVFDAV---LEKSVFLWTSMIG--GYAQLGYPSEAVNLFKRLLKTSVRPNEA--TLATTLSACAELGSLSKG 351 (622)
Q Consensus 279 ~~~~~~a~~~~~~~---~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a 351 (622)
.|+-..|.+.-.+. ...|-...-.++. +-.-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 34555555544332 2223333333332 334468888888888888752 2222 233344444667888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC-----CCChhH--HHHHHHHH---HHcCCHHHHHHHH
Q 006997 352 KEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVP-----DKDLAV--WSAMINGY---AIHGMGDQALNLF 421 (622)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~--~~~l~~~~---~~~~~~~~a~~~~ 421 (622)
.++-+..-..- +.-.-...+.+...+..|+++.|+++.+.-. ++++.- --.|+.+- .-.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 87777765543 3344566778888888888888888887543 344321 11222211 1234566777776
Q ss_pred HHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH------
Q 006997 422 YKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIH------ 494 (622)
Q Consensus 422 ~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~------ 494 (622)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|.+.++... .+.+.|+. +++=++
T Consensus 253 ~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHH
Confidence 66666 888854 4555667899999999999999998844 7877766433 33455553 333332
Q ss_pred hCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc-CChHHHHHHHHHhhhC
Q 006997 495 EMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA-GMWKEAATARGLMDDR 565 (622)
Q Consensus 495 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 565 (622)
.|. +.+..+......+....|++..|..-.+.+....| ..+.|..|+++-... |+-.++...+-+..+.
T Consensus 323 slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 333 44566777788888899999999999999999999 578899999988766 9999999999888764
No 171
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.84 E-value=9.9e-06 Score=46.91 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=31.5
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006997 524 AAKNLLTLNPGSTGNYILMANLFTSAGMWKEAAT 557 (622)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (622)
+|+++++++|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.00051 Score=56.19 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=107.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchH
Q 006997 465 GIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP---VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG--STGNY 539 (622)
Q Consensus 465 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~ 539 (622)
.+.|+...-..|...+.+.|+..||...|++.. ...|......+.++....+++..|...++++.+-+|. .|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 567888888889999999999999999999876 6677888899999999999999999999999998884 77889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 006997 540 ILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLLE 611 (622)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 611 (622)
..++.+|...|++.+|+..|+......+.+..-+.+. .|+. +.+...+..+++.++.+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~-------e~La---~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYA-------EMLA---KQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHH-------HHHH---HhcchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987655443222111 1222 244455555555666655543
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.81 E-value=0.0013 Score=61.41 Aligned_cols=144 Identities=16% Similarity=0.218 Sum_probs=82.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhcc-CchHHHHHHHHHhHHhcCCCCC----hhHHHHHHH
Q 006997 404 MINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHS-GMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVD 478 (622)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 478 (622)
.+..|...|++..|-+.+.+ +...|... |++++|++.|+++..-+..... ..++..++.
T Consensus 100 A~~~y~~~G~~~~aA~~~~~----------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE----------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH----------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 34555556665555554444 33455555 7778888777776643322222 344566777
Q ss_pred HHHhcCChHHHHHHHHhCC---CC-----CcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-----hHHHHHH
Q 006997 479 LLGRAGRFDLALKTIHEMP---VE-----VQAQ-VWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG-----NYILMAN 544 (622)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~---~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~ 544 (622)
.+.+.|++++|.++|+++. .. .+.. .+...+-++...||...|...+++..+.+|.-.+ ....|+.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 8888888888888888753 11 1111 2223333556678999999999999888885433 3334455
Q ss_pred HHHh--cCChHHHHHHHHHhh
Q 006997 545 LFTS--AGMWKEAATARGLMD 563 (622)
Q Consensus 545 ~~~~--~g~~~~A~~~~~~~~ 563 (622)
++-. ...+++|..-|+.+.
T Consensus 244 A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHHcccC
Confidence 5543 355666666666554
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.014 Score=54.58 Aligned_cols=101 Identities=13% Similarity=0.208 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcC--CCCc--hh
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKTSVR-----PNEA-TLATTLSACAELGSLSKGKEIEEYIVLNG--LESN--RQ 368 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~ 368 (622)
.+..+...+.+.|++++|+++|++....... .+.. .|...+-.+...||...|...++...... +..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445667788888888888888887664321 1121 22223334555677778877777765442 2222 34
Q ss_pred HHHHHHHHHHh--cCChHHHHHHhccCCCCChh
Q 006997 369 VQTSLIHMFSK--CGRINKAKEVFERVPDKDLA 399 (622)
Q Consensus 369 ~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~ 399 (622)
....|+.++-. ...++.+..-|+.+.+-|..
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 45556666654 34567777777777665543
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=6.1e-05 Score=52.96 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHccCC
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHH-NVELGEYAAKNLLTLNP 533 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 533 (622)
++..|..+...+...|++++|+..|++.. .+.+...|..++.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35667777888888888888888888776 3445778888888999998 79999999999999887
No 176
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00025 Score=53.71 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=52.2
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKH 515 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 515 (622)
.+...+...|++++|...++++.+. .| +...+..+...+...|++++|.+.+++.. .+.+...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3444445555666666666555532 22 23444555555666666666666665543 222334566666666677
Q ss_pred CCHHHHHHHHHHHHccCC
Q 006997 516 HNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p 533 (622)
|+.+.|...++++++..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777766665
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.0013 Score=61.11 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HhccCchHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006997 399 AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSA-CSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLV 477 (622)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 477 (622)
.+|..++....+.+..+.|..+|.++.+ .+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~-~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK-DK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4677888888888889999999999986 22 2233445444444 333577788999999998764 55778888999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 478 DLLGRAGRFDLALKTIHEMP--VEVQ---AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
+.+.+.|+.+.|..+|++.. ..++ ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999986 2222 35899999999999999999999999999888633
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.77 E-value=0.037 Score=52.06 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccC
Q 006997 369 VQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSG 448 (622)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 448 (622)
+.+..+.-+...|+...|.++-.+..-||-..|-..+.+++..++|++-.++... +-.+.-|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 3444455566677777777777777777777777777777777777766654321 122366777777777777
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
+..+|..+..++. +..-+..|.++|++.+|.+.--+.
T Consensus 252 ~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 252 NKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777777765421 133566677777777776665543
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=3.6e-05 Score=43.87 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 006997 99 VSWNSIISAHSRACLNDEAILVLKEMWVLGL 129 (622)
Q Consensus 99 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 129 (622)
.+||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988764
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.73 E-value=4e-05 Score=53.74 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=23.8
Q ss_pred ccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 446 HSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
+.|++++|+++|+++... .| +...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555533 23 34444445555555555555555555544
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=0.00012 Score=53.88 Aligned_cols=76 Identities=16% Similarity=0.373 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhHHhcCCCC---CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChH
Q 006997 412 GMGDQALNLFYKMQHVEGLKP---DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 487 (622)
|+++.|+.+++++.+ ..| +...+..+..++.+.|++++|..+++. . ...| +......+..+|.+.|+++
T Consensus 3 ~~y~~Ai~~~~k~~~---~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 3 GNYENAIKYYEKLLE---LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp T-HHHHHHHHHHHHH---HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred ccHHHHHHHHHHHHH---HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 455555555555554 222 222333345555555555555555544 1 1112 1222223344455555555
Q ss_pred HHHHHHH
Q 006997 488 LALKTIH 494 (622)
Q Consensus 488 ~A~~~~~ 494 (622)
+|++.++
T Consensus 76 eAi~~l~ 82 (84)
T PF12895_consen 76 EAIKALE 82 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.00083 Score=67.73 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=105.6
Q ss_pred CCCChhHHHHHHHHHHHc--C---CHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccC--------chHHHHHHHHH
Q 006997 394 PDKDLAVWSAMINGYAIH--G---MGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSG--------MVDDGLSFFKS 459 (622)
Q Consensus 394 ~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g--------~~~~a~~~~~~ 459 (622)
...+...|...+.+.... + +...|..+|+++.+ ..|+. ..+..+..++.... +...+.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346788999988875543 2 36799999999999 88984 55665555443221 22344444444
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 006997 460 MQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 460 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 538 (622)
.........++..|.++.-.+...|++++|...++++. ..|+...|..++..+...|+.++|.+.+++++.++|.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 33211123356778888777778899999999999987 67888889999999999999999999999999999988753
Q ss_pred H
Q 006997 539 Y 539 (622)
Q Consensus 539 ~ 539 (622)
|
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 3
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.69 E-value=0.00041 Score=54.13 Aligned_cols=88 Identities=15% Similarity=-0.020 Sum_probs=63.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-C---CCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---CCchHHHHHHHHH
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP-V---EVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG---STGNYILMANLFT 547 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~-~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 547 (622)
+..++...|+.++|+.++++.. . .++ ...+-.+.+++...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4555666677777777777654 1 111 335666778888888888888888888887777 6667777888888
Q ss_pred hcCChHHHHHHHHHhh
Q 006997 548 SAGMWKEAATARGLMD 563 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~ 563 (622)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8888888888776544
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.68 E-value=0.00065 Score=57.94 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHhccCchHHHHHHHHHhH
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP--DAVVYTSILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
.|..+...+...|++++|+..|++... ....| ...++..+..++...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~-l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMR-LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555554 11111 11244555555555555555555555554
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.68 E-value=0.00033 Score=63.70 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHH
Q 006997 473 YLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS---TGNYILMAN 544 (622)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 544 (622)
|...+..+.+.|++++|+..|+.+. ..|+ +..+.-++.++...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344566666666666554 2333 2345556777777788888888888888776664 445556677
Q ss_pred HHHhcCChHHHHHHHHHhhhC
Q 006997 545 LFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~ 565 (622)
++...|++++|.++|+++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777888888888888877664
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=6.3e-05 Score=42.84 Aligned_cols=30 Identities=30% Similarity=0.706 Sum_probs=22.1
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRMS 226 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 226 (622)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367777777777777777777777777665
No 187
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.64 E-value=0.00021 Score=68.01 Aligned_cols=67 Identities=18% Similarity=-0.010 Sum_probs=59.6
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch---HHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 499 EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGN---YILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+.+...|+.++.++...|++++|+..|+++++++|+++.. |++++.+|..+|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457789999999999999999999999999999988854 999999999999999999999998874
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.055 Score=50.33 Aligned_cols=288 Identities=16% Similarity=0.129 Sum_probs=158.2
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHhcCCHHH
Q 006997 209 VGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ--VGNLFLALSMHSLLLKSGYNNEDP--LDNLLVSMYTKCGDLEL 284 (622)
Q Consensus 209 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 284 (622)
.|+-..|.++-.+-.+. +..|..-+..++.+... .|+.+.|.+-|+.|... |... -...|.-.-.+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35555555555443322 34444555555554433 47777777777777542 1111 12223333345677777
Q ss_pred HHHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHh---ccCChHHHHHHH
Q 006997 285 ARRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTS-VRPNEA--TLATTLSACA---ELGSLSKGKEIE 355 (622)
Q Consensus 285 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~---~~~~~~~a~~~~ 355 (622)
|...-+..-.. -.-.+.+.+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-. -..+...|...-
T Consensus 173 Ar~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 173 ARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 76666554322 22356677777888888888888877655432 233322 1112222211 112344455444
Q ss_pred HHHHHcCCCCchh-HHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-
Q 006997 356 EYIVLNGLESNRQ-VQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD- 433 (622)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~- 433 (622)
.+..+. .|+.. .--.-...+.+.|++.++-.+++.+-+..+..- +...|......+.++.-+++..+...++||
T Consensus 253 ~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 253 LEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 444443 23321 122234567777888888777777654222221 122333333334555555555544457776
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCCCCCcHHhHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR-AGRFDLALKTIHEMPVEVQAQVWAP 507 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 507 (622)
......+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++..++.+....|....|..
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 3566667777778888888877777666 447777777777776544 4888888888877664555444543
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.62 E-value=0.063 Score=50.56 Aligned_cols=103 Identities=16% Similarity=0.193 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 006997 271 LLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSK 350 (622)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 350 (622)
..+.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++....-.. +-++..|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344445555556666665555555555566666666666666554443221 1123455555555555555555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 006997 351 GKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEV 389 (622)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (622)
|..+...+ + +..-+.+|.++|++.+|.+.
T Consensus 256 A~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 256 ASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 55544431 1 13344555555555555443
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.59 E-value=0.0084 Score=59.05 Aligned_cols=195 Identities=16% Similarity=0.192 Sum_probs=101.6
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHH
Q 006997 171 VMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLA 250 (622)
Q Consensus 171 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 250 (622)
+...++-.|++.+|.++|.+ .|.-.+|+++|..|+-- -..+-+...|..++-
T Consensus 638 lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHH
Confidence 34566778999999888775 45555666666655421 122333344444443
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 006997 251 LSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRP 330 (622)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 330 (622)
..+.++-.+- .-+..--.+...++...|+.++|..+. ..+|-.+-++++-+++.. .
T Consensus 690 KmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~ 745 (1081)
T KOG1538|consen 690 KMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----A 745 (1081)
T ss_pred HHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----h
Confidence 3333221110 001111122334455566666665542 233333444444333322 2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CChh---------
Q 006997 331 NEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KDLA--------- 399 (622)
Q Consensus 331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~--------- 399 (622)
+..+...+...+.+...+..|.++|..+-.. .++++++...+++.+|..+-++.++ +|+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 3334444444455556666666666665332 3466667777777777777776664 2321
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 006997 400 --VWSAMINGYAIHGMGDQALNLFYKMQH 426 (622)
Q Consensus 400 --~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (622)
-|...-.+|.+.|+-.+|.++++++..
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233466777888888888887765
No 191
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.58 E-value=0.075 Score=50.57 Aligned_cols=448 Identities=13% Similarity=0.069 Sum_probs=231.3
Q ss_pred hhhcCCchhHHHHHHHHHhCCCCCCccc------HHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHh--h
Q 006997 5 STNNGSFEETLSTYSSMLQTGVHGNSFT------FPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMY--S 76 (622)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~ 76 (622)
+.++++..+|.++|.+..+. +..++.. -+.+++++. .++.+..........+.. | ...|-.+..++ -
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 45788999999999998775 3333332 334566664 356666666666665543 2 33444454443 4
Q ss_pred cCCChhHHHHHhccCCCC-----CC-----------CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 006997 77 KCSDFVSSRKVLDEMPVR-----LR-----------SVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVV 140 (622)
Q Consensus 77 ~~~~~~~A~~~~~~~~~~-----~~-----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll 140 (622)
+.++++.|.+.+...... +| +...=+..+.++...|++.+++.++++|... +-|....|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~-llkrE~~w---- 165 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER-LLKRECEW---- 165 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-Hhhhhhcc----
Confidence 678899998887765443 11 1111255667788899999999999998763 12211112
Q ss_pred hhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHH
Q 006997 141 SGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCN 220 (622)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 220 (622)
+..+|+.++-++++.--+ ++-+.+...=...|..++..|.+.-.. ++
T Consensus 166 -----------------------~~d~yd~~vlmlsrSYfL----El~e~~s~dl~pdyYemilfY~kki~~------~d 212 (549)
T PF07079_consen 166 -----------------------NSDMYDRAVLMLSRSYFL----ELKESMSSDLYPDYYEMILFYLKKIHA------FD 212 (549)
T ss_pred -----------------------cHHHHHHHHHHHhHHHHH----HHHHhcccccChHHHHHHHHHHHHHHH------Hh
Confidence 555556655555442111 111111111122344555554433111 11
Q ss_pred HHHHCCCCCCHhHHHHHHHHHhcc--CChHHHHHHHHHHHHhCCCCCch-hHHHHHHHHHhcCCHHHHHHHHhhcC----
Q 006997 221 QMRRMSVTPDLVVFLNLILGCAQV--GNLFLALSMHSLLLKSGYNNEDP-LDNLLVSMYTKCGDLELARRVFDAVL---- 293 (622)
Q Consensus 221 ~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~---- 293 (622)
+-.-..+.|....+..++....-. ....--.+++......-+.|+.. +...|...+.+ +.+++..+.+.+.
T Consensus 213 ~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i 290 (549)
T PF07079_consen 213 QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKI 290 (549)
T ss_pred hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhH
Confidence 100111334444444444433322 12233344444444444444433 33444444443 4555555444332
Q ss_pred ----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHh-ccCCh---HHHHHHHHHH
Q 006997 294 ----EKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLAT-------TLSACA-ELGSL---SKGKEIEEYI 358 (622)
Q Consensus 294 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~~~-~~~~~---~~a~~~~~~~ 358 (622)
+.=+.+|..++....+.++...|.+.+.-+... .|+...-.. +-+..+ ...+. ..-..+|+.+
T Consensus 291 ~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~ 368 (549)
T PF07079_consen 291 EKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEI 368 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 223457888888889999999998888876654 333321111 111111 11112 2223344444
Q ss_pred HHcCCCCchhHHHHHH---HHHHhcCC-hHHHHHHhccCCC---CChhHHHHHH----HHHHH---cCCHHHHHHHHHHh
Q 006997 359 VLNGLESNRQVQTSLI---HMFSKCGR-INKAKEVFERVPD---KDLAVWSAMI----NGYAI---HGMGDQALNLFYKM 424 (622)
Q Consensus 359 ~~~~~~~~~~~~~~l~---~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~ 424 (622)
...++.. ......|+ .-+-+.|. -++|..+++.+.+ -|...-|.+. ..|.+ ...+..-+.+-+-+
T Consensus 369 qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi 447 (549)
T PF07079_consen 369 QSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI 447 (549)
T ss_pred HhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4433221 12222222 23344454 6777777776653 2433333221 22322 12233444444444
Q ss_pred HHhcCCCCCH----HHHHHHHHH--HhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 006997 425 QHVEGLKPDA----VVYTSILSA--CSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPV 498 (622)
Q Consensus 425 ~~~~~~~p~~----~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 498 (622)
.+ .|++|-. ..-+.+.+| +...|++.++.-.-.=+. .+.|++.+|.-+.-++....++++|+.++..+|
T Consensus 448 ~e-~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 448 TE-VGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred Hh-cCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 45 6777732 333444443 446788887766544444 468888888888888888888888888888876
Q ss_pred CCcHHhHH
Q 006997 499 EVQAQVWA 506 (622)
Q Consensus 499 ~~~~~~~~ 506 (622)
|+...++
T Consensus 523 -~n~~~~d 529 (549)
T PF07079_consen 523 -PNERMRD 529 (549)
T ss_pred -CchhhHH
Confidence 3544443
No 192
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.00075 Score=62.68 Aligned_cols=129 Identities=9% Similarity=0.083 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR-AGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
.+|..+++...+.+..+.|+.+|.++... -..+..+|...+..-.+ .++.+.|.++|+... ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788889899999999999999999843 23356667666666444 566677999999886 66778889999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGST---GNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+...++.+.|..+|++++..-|.+. ..|..+++.-.+.|+++...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999776544 57889999999999999999999888763
No 193
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0097 Score=55.51 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=57.2
Q ss_pred HhccCchHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHH---hHHHHHHHHHhc
Q 006997 444 CSHSGMVDDGLSFFKSMQSNFGIEPS-----IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQ---VWAPLLSACMKH 515 (622)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~~~ 515 (622)
..+.|++..|.+.|.+.+ ++.|+ ...|.....+..+.|+.++|+.-.+... ..|+. .+..-..++...
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHH
Confidence 345677777777777766 44553 4456566666677778888877777765 23322 223333345556
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHH
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGNYILM 542 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (622)
+++++|.+-++++.++... ......+
T Consensus 335 e~~e~AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHhhccc-cchHHHH
Confidence 7778888888887776553 3343333
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.57 E-value=0.00012 Score=45.60 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMAN 544 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (622)
.+|..+..++...|++++|+++++++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999988875
No 195
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00063 Score=63.29 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 502 AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..+++.+..++.+.+++..|++...++++++|+|...++.-+.+|...|+++.|+..|+++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445667777888888888888888888888888888888888888888888888888888876
No 196
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.55 E-value=0.00065 Score=62.81 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHh---HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCcH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSM---QSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--------VEVQA 502 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~ 502 (622)
..|..+.+.|.-.|+++.|+...+.- .+.+|-.. ....+..+.+++.-.|+++.|.+.++... .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34666666677788899988876642 22333222 24567778888888999999999887642 22234
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHcc----C--CCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTL----N--PGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..-.+|..+|.-..+++.|+.++++=+.+ + .....++..|+.+|...|.-++|+.+.++-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567888888888899999888875542 2 23566888999999999999999887765543
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.013 Score=52.93 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGST---GNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
...-|.+.|.+..|..-++.+++..|+.+ ++...++.+|.+.|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44567889999999999999999888754 467788899999999999999887664
No 198
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.54 E-value=0.0031 Score=51.15 Aligned_cols=89 Identities=8% Similarity=-0.005 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHH
Q 006997 403 AMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLL 480 (622)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 480 (622)
.+...+...|++++|.++|+.... +.|.. .-|..|.-+|...|++.+|+..|..... +.| ++..+-.+..++
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Confidence 334445556666666666666655 55543 3445555555566666666666666553 233 345555556666
Q ss_pred HhcCChHHHHHHHHhCC
Q 006997 481 GRAGRFDLALKTIHEMP 497 (622)
Q Consensus 481 ~~~g~~~~A~~~~~~~~ 497 (622)
...|+.+.|.+.|+...
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666655543
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.12 Score=51.83 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=103.1
Q ss_pred ChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHc-CCCCChhhHHHHHhhhhhhhhHHHHHHHHHh
Q 006997 80 DFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVL-GLELSASTFVSVVSGCSFRQGISMHCCVYKL 158 (622)
Q Consensus 80 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~ 158 (622)
..++|.+..+. .|.+..|..+.......-.++-|...|-+.... |++. . ..-..++.+-.
T Consensus 678 gledA~qfiEd----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~----v---------krl~~i~s~~~-- 738 (1189)
T KOG2041|consen 678 GLEDAIQFIED----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL----V---------KRLRTIHSKEQ-- 738 (1189)
T ss_pred chHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH----H---------HHhhhhhhHHH--
Confidence 35666665554 566778888877777666777777766554332 2221 0 00001111110
Q ss_pred CCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HhHH
Q 006997 159 GLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPD----LVVF 234 (622)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~ 234 (622)
-.+=+.+ --|++++|++++-.+-++|.. |..+.+.|++-.+.++++. .|-..| ...+
T Consensus 739 ---------q~aei~~--~~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~ 799 (1189)
T KOG2041|consen 739 ---------QRAEISA--FYGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAF 799 (1189)
T ss_pred ---------HhHhHhh--hhcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHH
Confidence 0111222 237788888888777666542 4555666666666555542 111111 2356
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChH
Q 006997 235 LNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPS 314 (622)
Q Consensus 235 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (622)
+.+...++....++.|.+.|..-... ...+.++.+..++++-+.+-+.+++. ......+...+...|.-+
T Consensus 800 r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~ 869 (1189)
T KOG2041|consen 800 RNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCD 869 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHH
Confidence 66666677777777777776553221 23455566666666655555555443 233444555566666666
Q ss_pred HHHHHHH
Q 006997 315 EAVNLFK 321 (622)
Q Consensus 315 ~a~~~~~ 321 (622)
+|.+.|-
T Consensus 870 qAV~a~L 876 (1189)
T KOG2041|consen 870 QAVEAYL 876 (1189)
T ss_pred HHHHHHH
Confidence 6655543
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.005 Score=53.64 Aligned_cols=134 Identities=12% Similarity=-0.013 Sum_probs=95.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCcHHhHHHH
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--------VEVQAQVWAPL 508 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l 508 (622)
.+.++.+..-.|.+.-....+++..++ .-+.++.....|++.-.+.|+.+.|...|++.. ...........
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445556666666777777777777654 334456666777777777777777777777442 12223334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCC
Q 006997 509 LSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTKEP 571 (622)
Q Consensus 509 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 571 (622)
...+.-++|+..|...+.++++.+|.++...+.-+-++.-.|+..+|.+.++.|....+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 455667788999999999999999999988888888888899999999999999886654433
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.00033 Score=49.90 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=53.2
Q ss_pred HHHHHhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 006997 477 VDLLGRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILM 542 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (622)
-..|.+.+++++|+++++++. . +.++..|...+..+...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 356788889999999998886 3 44566788888889999999999999999999999776655443
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.44 E-value=0.0018 Score=48.52 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=65.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCCchhHH
Q 006997 200 TTIIGGYVNVGNVNEAFGLCNQMRRMSV-TPDLVVFLNLILGCAQVG--------NLFLALSMHSLLLKSGYNNEDPLDN 270 (622)
Q Consensus 200 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (622)
-..|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666667999999999999999999 899999999999887653 2445778899999999999999999
Q ss_pred HHHHHHHh
Q 006997 271 LLVSMYTK 278 (622)
Q Consensus 271 ~l~~~~~~ 278 (622)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887765
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.0032 Score=47.23 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCchhH
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKTSV-RPNEATLATTLSACAELG--------SLSKGKEIEEYIVLNGLESNRQV 369 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 369 (622)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +......+++.+...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566677777999999999999999999 999999999999876543 24456778899999999999999
Q ss_pred HHHHHHHHHh
Q 006997 370 QTSLIHMFSK 379 (622)
Q Consensus 370 ~~~l~~~~~~ 379 (622)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887664
No 204
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0023 Score=61.80 Aligned_cols=118 Identities=10% Similarity=-0.033 Sum_probs=88.4
Q ss_pred CCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhc--CCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC--CCCcch
Q 006997 25 GVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVG--FQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR--LRSVVS 100 (622)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (622)
+.+.++.....+++.+....+++.+..++-..+... ...-+.+..++|+.|.+.|..+.++.++..=..- -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445566677888888888888888888887777652 3334556678888888888888888888765443 688888
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhh
Q 006997 101 WNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSG 142 (622)
Q Consensus 101 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 142 (622)
+|.||..+.+.|++..|.++...|...+...+..|+.-.+.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYS 182 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence 888888888888888888888888877766666666444433
No 205
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0027 Score=59.26 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
..++..+.-+|.+.+++.+|+...++.. .+++...+-.=+.++...|+++.|+..|+++++++|+|..+...++.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3567778899999999999999999887 56678888888899999999999999999999999999999999999888
Q ss_pred hcCChHHH-HHHHHHhhhC
Q 006997 548 SAGMWKEA-ATARGLMDDR 565 (622)
Q Consensus 548 ~~g~~~~A-~~~~~~~~~~ 565 (622)
+...+.+. .+.|..|-.+
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 87665554 7889988753
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0032 Score=57.31 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=67.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWA 506 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~ 506 (622)
.|........+.|++++|...|+.+... .|+ +..+..+...|...|++++|...|+++. ..|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3444444445557777777777777755 343 2455567777777777777777777764 2222 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 507 PLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 507 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
.++..+...|+.+.|...|+++++..|++..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677777889999999999999998886543
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.33 E-value=0.11 Score=46.93 Aligned_cols=67 Identities=9% Similarity=-0.108 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 006997 296 SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEA--TLATTLSACAELGSLSKGKEIEEYIVLNG 362 (622)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 362 (622)
+...+-.....+...|++++|.+.|+++...-..+... ....+..++.+.++++.|...++...+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33333344555566788888888888877753222111 11345566677788888888887777664
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.32 E-value=0.16 Score=48.33 Aligned_cols=134 Identities=14% Similarity=0.104 Sum_probs=106.3
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC-CCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHH-H
Q 006997 397 DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEG-LKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHY-L 474 (622)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~ 474 (622)
=...|...+..-.+..-.+.|..+|-+..+ .+ +.++...++.++.-++. |+..-|..+|+.-... .||...| .
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345677788888888888999999999998 77 66778888888887664 7888999999887644 4565555 3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP--VEVQ--AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS 535 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 535 (622)
..+.-+.+-++-+.|..+|+... ...+ ...|..++..-...|+...+..+-++..++.|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 56777888999999999999664 2223 5678888888889999999999999999998864
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.29 E-value=0.00033 Score=50.68 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHcc----CCC---CCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 502 AQVWAPLLSACMKHHNVELGEYAAKNLLTL----NPG---STGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346778888888999999999999988763 222 245788999999999999999999998754
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.27 E-value=0.0035 Score=60.60 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTS 372 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (622)
+..++++.|...|..+.++.+++.=...|+-||..+++.||..+.+.|++..|.++...|...+...++.++..
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L 178 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQAL 178 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHH
Confidence 33466666666666666666666666666666666666666666666666666666666655544444444333
No 211
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.011 Score=46.14 Aligned_cols=103 Identities=19% Similarity=0.201 Sum_probs=61.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPN--EATLATTLSACAELGSLSKGKEIEEYIVLNGLE--SNRQVQTSLIHMFS 378 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 378 (622)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888888776544 234556666777788888888888777654211 12222222334555
Q ss_pred hcCChHHHHHHhccCCCCChhHHHHHH
Q 006997 379 KCGRINKAKEVFERVPDKDLAVWSAMI 405 (622)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~~~~~~~~l~ 405 (622)
..|+.++|.+.+-....++...|.--|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~ 113 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAI 113 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666544333333333333
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.039 Score=48.33 Aligned_cols=136 Identities=10% Similarity=0.039 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----chhHHHHH
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLES-----NRQVQTSL 373 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 373 (622)
..+.++..+...|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|..+|+...+..-.. ...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666777778888888889998887766778888888888889999999999998776543233 33333334
Q ss_pred HHHHHhcCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 006997 374 IHMFSKCGRINKAKEVFERVPDK---DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVY 437 (622)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 437 (622)
...|.-.+++..|...|.++... |+...|.-.-+....|+..+|++..+.|.+ ..|...+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchh
Confidence 44566677888888888777743 444555555555667888888888888887 56655443
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.08 E-value=0.0053 Score=52.35 Aligned_cols=98 Identities=12% Similarity=0.234 Sum_probs=77.2
Q ss_pred HHHHHhhc--CCCCcchHHHHHHHHHcC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC-----------
Q 006997 184 ARSIFDEI--GETSIVSWTTIIGGYVNV-----GNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVG----------- 245 (622)
Q Consensus 184 A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 245 (622)
-...|+.. ..++-.+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 446778888888887754 677778888999999999999999999999876521
Q ss_pred -----ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 006997 246 -----NLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGD 281 (622)
Q Consensus 246 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (622)
+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 346688899999999999999999988888876654
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.07 E-value=0.0043 Score=47.62 Aligned_cols=92 Identities=16% Similarity=0.044 Sum_probs=74.9
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC----chHHHHHHHHHhcCC
Q 006997 478 DLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST----GNYILMANLFTSAGM 551 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 551 (622)
-++...|+.+.|++.|.+.. .+.....||.-..+++-+|+.++|..-+++++++.-+.. ..|...+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35677889999999998876 445677899999999999999999999999999754322 357788899999999
Q ss_pred hHHHHHHHHHhhhCCCcc
Q 006997 552 WKEAATARGLMDDRRLTK 569 (622)
Q Consensus 552 ~~~A~~~~~~~~~~~~~~ 569 (622)
.++|..-|+..-+-|.++
T Consensus 131 dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHhHHHHHHhCCHH
Confidence 999999999887766543
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.06 E-value=0.033 Score=49.03 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhcCChHHHHH
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGSTG---NYILMANLFTSAGMWKEAAT 557 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 557 (622)
++..|.+.|.+..|..-++.+++..|+.+. +...++..|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 455678899999999999999999997553 56778889999999885543
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.05 E-value=0.0085 Score=49.64 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566777888999999999999999999999999999999999999999999999998865
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.03 E-value=0.034 Score=51.96 Aligned_cols=154 Identities=13% Similarity=0.039 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh----HHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHh---cC-CCCCh
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKM----QHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSN---FG-IEPSI 470 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~-~~p~~ 470 (622)
.|..+...|.-.|+++.|+..-+.- ++ .|-+. ....+..+.+++.-.|+++.|.+.|+....- .| -....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e-fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE-FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHH-hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3444444555566676666544332 12 22222 1345667777777788888888877764321 01 11223
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCC-CC
Q 006997 471 EHYLCLVDLLGRAGRFDLALKTIHEMP--------VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTL-----NPG-ST 536 (622)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~-~~ 536 (622)
.+..+|.+.|.-...+++|+.++.+-. .-.....+-+|..++...|..++|+...++.+++ +|. ..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgel 355 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGEL 355 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhh
Confidence 444567777777777888888776542 1223445567888888888888888887776652 221 23
Q ss_pred chHHHHHHHHHhcCChHH
Q 006997 537 GNYILMANLFTSAGMWKE 554 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~ 554 (622)
+....+.+.-...|..+.
T Consensus 356 Tar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 356 TARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhhhhHHHHHHhCCCcc
Confidence 345566666666665443
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.01 E-value=0.14 Score=48.77 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=28.7
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 006997 501 QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS 535 (622)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 535 (622)
+--.+.+++.++.-.||.++|.+.+++++.+.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33345678889999999999999999999998743
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=96.99 E-value=0.012 Score=56.70 Aligned_cols=144 Identities=10% Similarity=0.103 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhcc---------CchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 006997 413 MGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHS---------GMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLG 481 (622)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 481 (622)
..+.|+.+|.+......+.|+. ..|..+..++... .+..+|.+.-++..+ +.| |+.....+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 3467788888887323377763 4555555554321 223345555555552 333 4555555556666
Q ss_pred hcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH--HHHHHHHhcCChHHHHH
Q 006997 482 RAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI--LMANLFTSAGMWKEAAT 557 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~ 557 (622)
-.|+++.|..+|++.. ..|+ ..+|......+.-.|+.++|.+.++++++++|....+-. ..+++|+.. ..++|..
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 6666777777777665 3444 455666666666677777777777777777775433322 223334433 3455555
Q ss_pred HHH
Q 006997 558 ARG 560 (622)
Q Consensus 558 ~~~ 560 (622)
+|-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 554
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.97 E-value=0.019 Score=45.80 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=63.8
Q ss_pred HHHHHhcCChHHHHHHHHhCC----CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc---hHHHHHHHHHh
Q 006997 477 VDLLGRAGRFDLALKTIHEMP----VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG---NYILMANLFTS 548 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 548 (622)
.....+.|++++|.+.|+.+. ..| ....-..|+.++.+.+++++|...+++.+++.|.++. ++...|-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 344456677777777777764 111 2344556788888999999999999999999988765 45566666666
Q ss_pred cCC---------------hHHHHHHHHHhhhCCC
Q 006997 549 AGM---------------WKEAATARGLMDDRRL 567 (622)
Q Consensus 549 ~g~---------------~~~A~~~~~~~~~~~~ 567 (622)
+.. ..+|...|++++++-+
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 655 6778888887776433
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.95 E-value=0.073 Score=52.82 Aligned_cols=217 Identities=16% Similarity=0.149 Sum_probs=111.9
Q ss_pred HHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006997 302 SMIGGYAQLGY--PSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK 379 (622)
Q Consensus 302 ~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (622)
..-.+|.+..+ +-+.+.-++++++.|-.|+.... ...|+-.|++.+|.++|.+- |.+ +..+.+|..
T Consensus 603 ~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTD 670 (1081)
T KOG1538|consen 603 TARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTD 670 (1081)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHH
Confidence 33345554443 34556667788888877887643 44566678888888887643 322 344556666
Q ss_pred cCChHHHHHHhccCCCC--------------ChhHHHHHHHHHHHcCCHHHHHHHHHH------hHHhcCCC---CCHHH
Q 006997 380 CGRINKAKEVFERVPDK--------------DLAVWSAMINGYAIHGMGDQALNLFYK------MQHVEGLK---PDAVV 436 (622)
Q Consensus 380 ~~~~~~A~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~~---p~~~~ 436 (622)
...++.|.+++...... ++.--.+....+...|+.++|..+.-+ +.+ -+-+ .+..+
T Consensus 671 lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lid-I~rkld~~ere~ 749 (1081)
T KOG1538|consen 671 LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLID-IARKLDKAEREP 749 (1081)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHH-HHhhcchhhhhH
Confidence 66666666666543210 111111222333444554444433211 011 1111 12233
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhc
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKH 515 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~ 515 (622)
...+..-+-+...+..|.++|.+|-. ...+++.....++|++|..+-++.+ ..|+ .|....+-....
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d--Vy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD--VYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc--ccchHHHHhhhh
Confidence 33333334444455555555554431 1235556666667777766666665 2232 233344444455
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.++++|.+ +|-+.|+..||..+++++..
T Consensus 818 DrFeEAqk---------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQK---------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHH---------------------HHHHhcchHHHHHHHHHhhh
Confidence 55555544 44566777778777777754
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.056 Score=48.85 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC-CCC-cHHhHH
Q 006997 432 PDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG---RFDLALKTIHEMP-VEV-QAQVWA 506 (622)
Q Consensus 432 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~~~~~~ 506 (622)
-|...|..|..+|...|+.+.|...|....+- -.+++..+..+..++..+. ...++.++|+++. .+| ++.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35678888999999999999999999888743 1335667777777665432 4678888998887 344 466677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 507 PLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 507 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
-|...+...|++.+|...++.++...|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7778888999999999999999998875443
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.84 E-value=0.063 Score=51.84 Aligned_cols=81 Identities=10% Similarity=-0.035 Sum_probs=54.5
Q ss_pred hHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 486 FDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 486 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
..+|.++.++.. .+.|+.....++.+....++++.|...|++++.++|+.+.+|...+++..-.|+.++|.+.+++..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445555655554 344555566666666666667777777777777777777777777777777777777777777755
Q ss_pred hCC
Q 006997 564 DRR 566 (622)
Q Consensus 564 ~~~ 566 (622)
+..
T Consensus 400 rLs 402 (458)
T PRK11906 400 QLE 402 (458)
T ss_pred ccC
Confidence 433
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.23 Score=43.29 Aligned_cols=87 Identities=11% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHc----cCCCCCchH
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-------VEVQA-QVWAPLLSACMKHHNVELGEYAAKNLLT----LNPGSTGNY 539 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~ 539 (622)
.+....+.|.+..++++|-..+.+-. .-++. ..+.+.+-.+....|+..|+..++.-.+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444555666666666655554432 11221 2234444455556677777777777544 345555566
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 006997 540 ILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~ 559 (622)
..|...| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6665554 456666666554
No 225
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.79 E-value=0.02 Score=48.91 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=73.5
Q ss_pred HHHHhhc--CCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-------------
Q 006997 286 RRVFDAV--LEKSVFLWTSMIGGYAQ-----LGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAEL------------- 345 (622)
Q Consensus 286 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~------------- 345 (622)
...|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45566777777777764 467777888888899999999999999999887542
Q ss_pred ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006997 346 ---GSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGR 382 (622)
Q Consensus 346 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (622)
.+-+.|.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356788889999999999999998888888876554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.77 E-value=0.0045 Score=44.64 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-----C---CCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-----V---EVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 531 (622)
+++.+...|...|++++|++.+++.. . .|+ ..++..++.++...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444555555555555555554432 1 122 445667777777788888888888777653
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.89 Score=47.16 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Q 006997 372 SLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYK 423 (622)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 423 (622)
-++..+.+..+++.+..+.+...+.++..|..++..+++.+..+.-.+...+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 4566667777777887777777777788888888888877755544443333
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.01 Score=52.76 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=55.0
Q ss_pred hcCChHHHHHHHHhCC-------CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHHHhcCC
Q 006997 482 RAGRFDLALKTIHEMP-------VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS---TGNYILMANLFTSAGM 551 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~ 551 (622)
+.|++.+|.+-|.... ..|+..-| |+.++...|++++|...|..+.+-.|++ |+.+.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4444555555555442 23344444 6667777777777777777777765543 4567777778888888
Q ss_pred hHHHHHHHHHhhhCCC
Q 006997 552 WKEAATARGLMDDRRL 567 (622)
Q Consensus 552 ~~~A~~~~~~~~~~~~ 567 (622)
.++|..+|+++.++-+
T Consensus 231 ~d~A~atl~qv~k~YP 246 (262)
T COG1729 231 TDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 8888888887776543
No 229
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.71 E-value=0.38 Score=42.37 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVR--PNEATLATTLSACAELGSLSKGKEIEEYIVLN 361 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (622)
....+...|++.+|...|+++...... --......++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556667777777777777654211 11233445556666677777777777666654
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.66 E-value=0.66 Score=44.51 Aligned_cols=190 Identities=15% Similarity=0.087 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCC--CCChhH-------HHHHHHHHH----HcCCHHHHHHHHHHhHHhcCCCCCH
Q 006997 368 QVQTSLIHMFSKCGRINKAKEVFERVP--DKDLAV-------WSAMINGYA----IHGMGDQALNLFYKMQHVEGLKPDA 434 (622)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~ 434 (622)
..+..++....+.++...|.+.+.-+. +|+... -..+-+..+ ..-+..+=+.+|+.... ...|.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs---~DiDr 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS---YDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh---hcccH
Confidence 345555556666666666666665443 232210 111111122 11223344556666655 33443
Q ss_pred H-HHHHHH---HHHhccCc-hHHHHHHHHHhHHhcCCCC-ChhHHHHHH----HHHHhc---CChHH---HHHHHHhCCC
Q 006997 435 V-VYTSIL---SACSHSGM-VDDGLSFFKSMQSNFGIEP-SIEHYLCLV----DLLGRA---GRFDL---ALKTIHEMPV 498 (622)
Q Consensus 435 ~-~~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l~----~~~~~~---g~~~~---A~~~~~~~~~ 498 (622)
. ....++ .-+-+.|. -++|+++++.+.. +.| |..+-+... ..|... ..+.+ -...+++...
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 2 112222 23444554 7788888888773 344 443333222 222221 11222 2222333332
Q ss_pred CC----cHHhHHHHHHH--HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 499 EV----QAQVWAPLLSA--CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 499 ~~----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+| +...-|.|..+ ...+|++.++.-.-.=+.+..| ++.+|..+|-++....++++|..++..++-
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 22 23344555554 4578999999887777888999 999999999999999999999999997753
No 231
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.63 E-value=1.2 Score=46.89 Aligned_cols=72 Identities=17% Similarity=-0.007 Sum_probs=35.9
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 006997 273 VSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELG 346 (622)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 346 (622)
+..+.+.+++.....++.. ...+.........+....|+.++|....+.+-..| ...+.....++..+.+.|
T Consensus 106 l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 3344455666666663322 22344444555556666666666665555554444 223444444444444333
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.57 E-value=0.033 Score=51.14 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=26.1
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCChHHHHH
Q 006997 307 YAQLGYPSEAVNLFKRLLKT--SVRPNEATLATTLSACAELGSLSKGKE 353 (622)
Q Consensus 307 ~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~ 353 (622)
+....+.++|+..+.+-... .......+|..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 34556677777777665542 111223455556666666666665544
No 233
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.53 E-value=0.0069 Score=50.47 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=67.5
Q ss_pred HHhcCChHHHHHHHHhCC--CCC-----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006997 480 LGRAGRFDLALKTIHEMP--VEV-----QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMW 552 (622)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~--~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (622)
+...|++++|..-|.++. .++ ....|..-..+..+.+.++.|+.-..++++++|....+....+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 445666666666665543 111 2334445555777889999999999999999998888888889999999999
Q ss_pred HHHHHHHHHhhhCCCcc
Q 006997 553 KEAATARGLMDDRRLTK 569 (622)
Q Consensus 553 ~~A~~~~~~~~~~~~~~ 569 (622)
++|++-|+++.+.++..
T Consensus 185 eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 99999999998866543
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.53 E-value=0.59 Score=42.28 Aligned_cols=195 Identities=21% Similarity=0.201 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCC-----CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHH
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVP-----DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSI 440 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 440 (622)
..........+...+.+..+...+.... ......+......+...+++..+.+.+..... ..++. ......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA---LDPDPDLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc---CCCCcchHHHHH
Confidence 3444555555666666666666555443 12334444555556666667777777777665 32322 222222
Q ss_pred HH-HHhccCchHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CC-cHHhHHHHHHHH
Q 006997 441 LS-ACSHSGMVDDGLSFFKSMQSNFGIEP----SIEHYLCLVDLLGRAGRFDLALKTIHEMP-V-EV-QAQVWAPLLSAC 512 (622)
Q Consensus 441 l~-~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~-~~~~~~~l~~~~ 512 (622)
.. ++...|+++.+...+.+... ..| ....+......+...++.+++...+.+.. . .. ....+..+...+
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 22 56777777777777777743 222 23333344444666777888887777765 2 22 355667777777
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 513 MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
...++++.|...+..++...|.....+..++..+...|+++++...+++......
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 7777888888888888888876566667777777766778888888777765433
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.12 Score=52.09 Aligned_cols=159 Identities=15% Similarity=0.141 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHh----ccCchHHHHHHHHHhHHhcCCCCChhHH
Q 006997 403 AMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-----VVYTSILSACS----HSGMVDDGLSFFKSMQSNFGIEPSIEHY 473 (622)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 473 (622)
.++....-.|+-+.+++.+.+..+..++.-.. -.|..++..+. ...+.+.|.++++.+..+ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444445566666666666655422222111 12333333222 245677888888888855 6776666
Q ss_pred HH-HHHHHHhcCChHHHHHHHHhCCC------CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch-HHHHHHH
Q 006997 474 LC-LVDLLGRAGRFDLALKTIHEMPV------EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGN-YILMANL 545 (622)
Q Consensus 474 ~~-l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~ 545 (622)
.. -.+.+...|+.++|++.|++... +.....+--++..+....++++|...+.++.+.+.-+... .+..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 53 34566778888888888887541 1223345556777888899999999999998866533333 4455677
Q ss_pred HHhcCCh-------HHHHHHHHHhhh
Q 006997 546 FTSAGMW-------KEAATARGLMDD 564 (622)
Q Consensus 546 ~~~~g~~-------~~A~~~~~~~~~ 564 (622)
+...|+. ++|.++|++++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888988 888889888865
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=96.42 E-value=0.036 Score=45.35 Aligned_cols=86 Identities=8% Similarity=-0.025 Sum_probs=58.2
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCH
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNV 518 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 518 (622)
.-+...|++++|..+|.-+..- .| +..-|..|..++-..+++++|+..+.... ...|+...-..+.++...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~---d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIY---DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3345667888888888776632 33 45555667777777788888888776553 233444455567777788888
Q ss_pred HHHHHHHHHHHc
Q 006997 519 ELGEYAAKNLLT 530 (622)
Q Consensus 519 ~~a~~~~~~~~~ 530 (622)
+.|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887777
No 237
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=1.5 Score=45.27 Aligned_cols=106 Identities=11% Similarity=0.034 Sum_probs=72.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHH
Q 006997 104 IISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNE 183 (622)
Q Consensus 104 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 183 (622)
=|..+.+.+.+++|++..+.... ..|... -..++...+..+...|++++
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~-----------------------------i~kv~~~yI~HLl~~~~y~~ 410 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFV-----------------------------IKKVGKTYIDHLLFEGKYDE 410 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--Cccccc-----------------------------hHHHHHHHHHHHHhcchHHH
Confidence 35567778888898888766532 222110 23345677888888999999
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 006997 184 ARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ 243 (622)
Q Consensus 184 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (622)
|-...-.|...+..-|.-.+..+...++......++- ......+...|..++..+..
T Consensus 411 Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lP---t~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 411 AASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLP---TGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHhhhHHHhcchHHHHHHHHHHhccccccchhhccCC---CCCcccCchHHHHHHHHHHH
Confidence 9999999988888888888888888877765544432 22122456677777777765
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=1.5 Score=45.02 Aligned_cols=113 Identities=14% Similarity=0.168 Sum_probs=84.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACS 445 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 445 (622)
..-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+.. +.-|..+..+|.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACL 755 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHH
Confidence 3344455566677788899999999988888888888888889999998887776554432 455777888999
Q ss_pred ccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 006997 446 HSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHE 495 (622)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (622)
+.|+.++|.+++-+.- |.. -.+.+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 9999999998886543 221 467888888888888776544
No 239
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.34 E-value=0.056 Score=42.78 Aligned_cols=97 Identities=14% Similarity=0.212 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhc
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSH 446 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 446 (622)
..++..++.++++.|+++....+++..-..|+.. -...+. ........|+..+..+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~----------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD----------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc----------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 3455666666666666666666665443211110 000000 11114567888888888888888
Q ss_pred cCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006997 447 SGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLL 480 (622)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 480 (622)
.|++..|.++.+...+.++++.+...|..|+.-.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8999999999998888888877888888777543
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.29 Score=44.19 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=85.8
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHH---HHHHHHhcCC
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAP---LLSACMKHHN 517 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~ 517 (622)
......|++.+|...|+..... .| +...--.++.+|...|+.+.|..++..++.......+.. -+....+..+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3456778889999988888754 33 456666788999999999999999999884333333333 2223333333
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 518 VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
..+. ..+++-+..+|+|...-..++..|...|+.++|.+.+=.+.+++.
T Consensus 219 ~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 219 TPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3322 234445567899999999999999999999999998887776543
No 241
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=3.3 Score=48.63 Aligned_cols=312 Identities=13% Similarity=0.075 Sum_probs=158.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCC--CCCchhHHHHHHHHHhcCCHHHHHHHHhh-cCCCCHHHHHHHHHHHHhcCCh
Q 006997 237 LILGCAQVGNLFLALSMHSLLLKSGY--NNEDPLDNLLVSMYTKCGDLELARRVFDA-VLEKSVFLWTSMIGGYAQLGYP 313 (622)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 313 (622)
+..+-.+.+.+..|...++.-..... ......+..+...|..-+++|....+... ...++ ...-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 33444455666666666665210000 11122334444467777777766666552 22222 22234445567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCChHHHHHHhcc
Q 006997 314 SEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQ-VQTSLIHMFSKCGRINKAKEVFER 392 (622)
Q Consensus 314 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~ 392 (622)
..|...|+.+.+.+ ++...+++.++......|.+.......+-..... ++... .++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888887764 2335566666666666666666655444433322 22222 22222334456666666666655
Q ss_pred CCCCChhHHHHH--HHHHHHcC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHH---------
Q 006997 393 VPDKDLAVWSAM--INGYAIHG--MGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKS--------- 459 (622)
Q Consensus 393 ~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~--------- 459 (622)
..+..+|... .....+.. +.-.-.+..+.+.+ .-+.| +.+|+..|.+..+.++.-+
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~-~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRE-LVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHH-Hhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 3344445443 22222221 21112223333333 11111 1122222221122111111
Q ss_pred -hHHhcCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006997 460 -MQSNFGIEPSI------EHYLCLVDLLGRAGRFDLALKTIHEMP---------VEVQAQVWAPLLSACMKHHNVELGEY 523 (622)
Q Consensus 460 -~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~ 523 (622)
.....+..++. ..|..-+..-....+..+-+--+++.. ...-..+|......++..|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11111333332 122222211111112222222222211 12236689999999999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 524 AAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
..-.+.+..+ +.++.-.+..+...|+...|..++++..+...
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9888888664 78899999999999999999999999886443
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.25 E-value=0.33 Score=37.80 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=83.7
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 487 (622)
+.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-|.+.|- .....++.+|.+.|..
T Consensus 12 ~ildG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---
T ss_pred HHHhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcch-
Confidence 34567788888888887761 12333444444444444556666677666544443331 1122345555554432
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 488 LALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 488 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.......+.....+|.-+.-.+++..+...+..+|+...-++.+|.+.|+..++.+++.++.++|+
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 233444566777889989888999988865555889999999999999999999999999999887
Q ss_pred c
Q 006997 568 T 568 (622)
Q Consensus 568 ~ 568 (622)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
No 243
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.23 E-value=0.75 Score=43.96 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 006997 268 LDNLLVSMYTKCGDLELARRVFDAVLEK-------SVFLWTSMIGGYAQ---LGYPSEAVNLFKRLLKTSVRPNEATLAT 337 (622)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 337 (622)
+...++-.|....+++...++++.+... ....--....++.+ .|+.++|++++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334555677888888888888877543 12222234455666 7888999999888666666778888877
Q ss_pred HHHHH
Q 006997 338 TLSAC 342 (622)
Q Consensus 338 ll~~~ 342 (622)
+.+.|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 77665
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.23 E-value=0.012 Score=34.07 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTLNPGS 535 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 535 (622)
.|..++..+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 46667777777777777777777777777754
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.20 E-value=0.0086 Score=34.67 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777888888888888888888888775
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.16 E-value=1.1 Score=41.74 Aligned_cols=194 Identities=14% Similarity=0.071 Sum_probs=110.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH-------hhcCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---CHHH
Q 006997 268 LDNLLVSMYTKCGDLELARRVF-------DAVLEK--SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT-SVRP---NEAT 334 (622)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~-------~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~ 334 (622)
++..+..+.++.|.+++++..- ....+. -..+|..+.+++-+.-++.+++.+-+.-... |..| ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555555556555554321 111111 1245666677776666777777666554431 2222 1123
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCChHHHHHHhccCC-------CCChh-HH
Q 006997 335 LATTLSACAELGSLSKGKEIEEYIVLNG-----LESNRQVQTSLIHMFSKCGRINKAKEVFERVP-------DKDLA-VW 401 (622)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~-~~ 401 (622)
..++..++...+.++++.+.|+.+.+.. ......++..|...|.+..++++|.-+..+.. -.|.. -|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3346667777788888888888776532 12234677888888888888888765554332 12321 12
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHhHHh---cCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhH
Q 006997 402 -----SAMINGYAIHGMGDQALNLFYKMQHV---EGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 402 -----~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
-.|.-++...|+..+|.+..++..+. .|-.|- ......+.+.|...|+.+.|+.-|+.+.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22344566777777777777766541 222221 2334556667778888888777777654
No 247
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.15 E-value=0.028 Score=54.12 Aligned_cols=62 Identities=13% Similarity=-0.005 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQA----QVWAPLLSACMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 531 (622)
...++.+..+|.+.|++++|+..|++.. ..|+. .+|..+..+|...|+.++|++.+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555556666666666666666666544 44442 23666666666666666666666666665
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.13 E-value=2.7 Score=45.75 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=41.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 006997 307 YAQLGYPSEAVNLFKRLLKTSVRPNEA--TLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRIN 384 (622)
Q Consensus 307 ~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (622)
|...|+|.+|+.+-.++... -+.. +-..|..-+...++.-+|-++..+.... ....+..|++...++
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWE 1043 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHH
Confidence 44567777777776665321 1111 1134555566666666666555544321 123445566666777
Q ss_pred HHHHHhccCCC
Q 006997 385 KAKEVFERVPD 395 (622)
Q Consensus 385 ~A~~~~~~~~~ 395 (622)
+|..+-....+
T Consensus 1044 eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1044 EALRVASKAKR 1054 (1265)
T ss_pred HHHHHHHhccc
Confidence 77776655543
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.12 E-value=0.92 Score=40.33 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCc---hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 507 PLLSACMKHHNVELGEYAAKNLLTLNPGSTG---NYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 507 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
....-|.+.|.+..|..-++.+++.-|+.+. .+..+..+|.+.|..++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3556788999999999999999998776554 455667789999999999998877654
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=1 Score=40.70 Aligned_cols=196 Identities=20% Similarity=0.175 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCh-hHHHHHHH-H
Q 006997 333 ATLATTLSACAELGSLSKGKEIEEYIVLN-GLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KDL-AVWSAMIN-G 407 (622)
Q Consensus 333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 407 (622)
..+......+...+.+..+...+...... ........+......+...+.+..+.+.+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555555444432 2233334444455555555556666666655543 111 12222223 6
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKP----DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS--IEHYLCLVDLLG 481 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 481 (622)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+...... .++ ...+..+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 140 LYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHH
Confidence 7788888888888888854 444 2334444444567788899999999888743 333 667777888888
Q ss_pred hcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 482 RAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
..++++.|...+.... ..|+ ...+..+...+...+..+.+...+++.+...|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8889999999998876 3443 445555666666677899999999999999886
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=2 Score=43.71 Aligned_cols=63 Identities=8% Similarity=-0.168 Sum_probs=31.8
Q ss_pred CCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcch------------HHHHHHHHHhCCCchHHHHHHHHHHHc
Q 006997 62 QQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVS------------WNSIISAHSRACLNDEAILVLKEMWVL 127 (622)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~li~~~~~~~~~~~A~~~~~~m~~~ 127 (622)
.|.+..|..+...-...-.++.|+..|-+... .+.+.. -.+=+. +--|++++|.++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchh
Confidence 46666666666555555555555555544331 111100 011112 2247788888888777553
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.66 Score=42.01 Aligned_cols=148 Identities=10% Similarity=0.021 Sum_probs=105.2
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 006997 406 NGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG 484 (622)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 484 (622)
......|++.+|..+|+.... ..|+ ......+..+|...|+.+.|..++..+-.. --.........-+..+.+..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHh
Confidence 345678899999999998887 4443 456677888999999999999999876532 00111222234456677777
Q ss_pred ChHHHHHHHHhCCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCCchHHHHHHHHHhcCChHHHHH
Q 006997 485 RFDLALKTIHEMPVEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLN--PGSTGNYILMANLFTSAGMWKEAAT 557 (622)
Q Consensus 485 ~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (622)
...+..++-++.-..| |...-..+...+...|+.+.|.+.+-.++..+ -++..+...+..++.-.|.-+.+..
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 7776666666665455 56677778888899999999999888888753 4577888888888888885544433
No 253
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.01 E-value=2 Score=43.11 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
..+|...+.--...|+.+...-+|++..-- ...=...|-..+.-....|+.+-|..++.... ..|+......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 356777888888889999988888876521 11123455556666666688888887777654 33333333333333
Q ss_pred -HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006997 512 -CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAAT 557 (622)
Q Consensus 512 -~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (622)
+-..|++..|..+++.+.+--|+...+-..-+.+..+.|+.+.+..
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 3456899999999999988668877777788888889999998883
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.93 E-value=0.021 Score=44.00 Aligned_cols=55 Identities=16% Similarity=0.027 Sum_probs=51.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
-+....|+.+.|++.|.+++.+.|..+++|+..+.++.-+|+.++|++-+.+..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999998876
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.87 E-value=0.23 Score=39.79 Aligned_cols=116 Identities=9% Similarity=0.052 Sum_probs=61.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRA 483 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 483 (622)
.....+.|++++|.+.|+.+....-..| ....-..++.+|.+.++++.|...+++.++.+.-.|+ .-|...+.++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3444566777777777777765211111 1344566667777777777777777777754332332 2233333333322
Q ss_pred CChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 484 GRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 484 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
...+ ..+..+. ..-+..+....|...|++++..-|++.
T Consensus 96 ~~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2111 1111111 111112335678888999999999754
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.082 Score=47.17 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=30.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCC----CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP----VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
|..++...|++++|..+|..+. ..| -+..+..|.....+.|+.++|...++++++..|+.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 4444444444444444444332 111 1334444555555556666666666666666665443
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.85 E-value=0.61 Score=46.30 Aligned_cols=160 Identities=12% Similarity=0.078 Sum_probs=103.1
Q ss_pred HHHHhcCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 006997 305 GGYAQLGYPSEAVNLFKR-LLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRI 383 (622)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (622)
....-.++++.+.++.+. -.-..+ +......++.-+.+.|-.+.|.++...- ..-.+...++|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 344556777777666641 111111 2444667777778888888887764322 2234566788999
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHh
Q 006997 384 NKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 384 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 463 (622)
+.|.++.++.. +...|..|.......|+++-|++.|++..+ +..++-.|...|+.+...++.+....+
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999888775 566899999999999999999999998876 667777888888888777777666543
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 464 FGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 464 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
| -++....++.-.|+.++..+++.+..
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 24445556666788888888887765
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.11 Score=47.28 Aligned_cols=159 Identities=13% Similarity=-0.018 Sum_probs=113.3
Q ss_pred HcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHH----HHHHHHHhcCC
Q 006997 410 IHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYL----CLVDLLGRAGR 485 (622)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 485 (622)
.+|+..+|...++++.+ ..+.|...+...=.+|...|+...-...++++... ..|+...|. .+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 57788888888888886 35556677777778899999999999999888854 355655444 34445678899
Q ss_pred hHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC----CCCchHHHHHHHHHhcCChHHHHHHH
Q 006997 486 FDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP----GSTGNYILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 486 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (622)
+++|.+.-++.. .+.|.-.-.+........|++.++.+..++--..=. --...|-+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998886 333444445666667778889988888876543211 12345667777888889999999999
Q ss_pred HHhhhCCCccCCC
Q 006997 560 GLMDDRRLTKEPG 572 (622)
Q Consensus 560 ~~~~~~~~~~~~~ 572 (622)
+.-.-+...++-+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8665554555444
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.68 E-value=2.3 Score=41.46 Aligned_cols=150 Identities=11% Similarity=0.018 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC---CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC--h
Q 006997 396 KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP---DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS--I 470 (622)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~ 470 (622)
....+|..++..+.+.|+++.|...+.++.. .+..+ .+.....-+...-..|+..+|+..++..... .+..+ .
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 3456788888889999999999999888876 33111 2334444556666778888999888887752 11111 1
Q ss_pred hHHHHHHHHHHhcCChHHHHHH-HHhCCCCCcHHhHHHHHHHHHhc------CCHHHHHHHHHHHHccCCCCCchHHHHH
Q 006997 471 EHYLCLVDLLGRAGRFDLALKT-IHEMPVEVQAQVWAPLLSACMKH------HNVELGEYAAKNLLTLNPGSTGNYILMA 543 (622)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (622)
.....+...+.. ..+..... ........-...+..++.-+... ++.+.+...|+.+.++.|.....|..++
T Consensus 222 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 111111111000 00000000 00000000122333334434344 7889999999999999999888999888
Q ss_pred HHHHhc
Q 006997 544 NLFTSA 549 (622)
Q Consensus 544 ~~~~~~ 549 (622)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 887654
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.55 E-value=2.4 Score=40.78 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=55.6
Q ss_pred CCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHH
Q 006997 28 GNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISA 107 (622)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~ 107 (622)
-|...|..|+.-+...+..++.++++++|..- ++--+.+|...+++=....++.....+|.+......+...|...+..
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~Y 118 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEY 118 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHH
Confidence 35557778888887777887777777777532 23445567666766666777777777777766555667777766664
Q ss_pred HHh
Q 006997 108 HSR 110 (622)
Q Consensus 108 ~~~ 110 (622)
..+
T Consensus 119 IRr 121 (660)
T COG5107 119 IRR 121 (660)
T ss_pred HHh
Confidence 443
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.55 E-value=1.9 Score=42.20 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=12.7
Q ss_pred HHHHHHHHHHccCCCCC
Q 006997 520 LGEYAAKNLLTLNPGST 536 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~ 536 (622)
.|.+.+.++++.+|.-+
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46788888988888543
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.49 E-value=3.2 Score=41.72 Aligned_cols=181 Identities=13% Similarity=0.091 Sum_probs=120.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPDKD---LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILS 442 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 442 (622)
....|+..++...+.|+.+.+.-.|++..-|- ...|-..+.-....|+.+-|..++....+ -..+-.+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~-i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACK-IHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhh-hcCCCCcHHHHHHHH
Confidence 34677777778888899999988888877542 23455555555555888888888877766 333333333333333
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCcHHhHHHHHH-----HH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLAL---KTIHEMP-VEVQAQVWAPLLS-----AC 512 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~~-----~~ 512 (622)
.+-..|+++.|..+++.+.+. . |+ ...-..-+....+.|..+.+. .++.... ..-+......+.- .+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 455678999999999999875 3 54 333334456667888888887 4444433 2222222222222 23
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006997 513 MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG 550 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (622)
...++.+.|..++.++.+..|.+...|..+.+.....+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 34689999999999999999999999999988877665
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.44 E-value=0.94 Score=37.02 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHH
Q 006997 337 TTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQ 416 (622)
Q Consensus 337 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (622)
.++..+...+.......+++.+.+.+ +.++..++.++..|++.+ .++..+.+.. ..+.......+..|.+.+-+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444455556666666666666555 345566666666666542 2333333331 1122222334444444444444
Q ss_pred HHHHHHHh
Q 006997 417 ALNLFYKM 424 (622)
Q Consensus 417 a~~~~~~~ 424 (622)
+..++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 44444443
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.31 E-value=0.67 Score=46.03 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=93.0
Q ss_pred hhcCCChhHHHHHhc--cCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHH
Q 006997 75 YSKCSDFVSSRKVLD--EMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMH 152 (622)
Q Consensus 75 ~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~ 152 (622)
..-.++++++.+..+ ++.. .-...-.+.++..+-+.|.++.|+++-+.-.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------------------- 322 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD--------------------------- 322 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------------------
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH---------------------------
Confidence 344567777433332 1110 1113447778888888888888888754421
Q ss_pred HHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh
Q 006997 153 CCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLV 232 (622)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 232 (622)
.-.....++|+++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+
T Consensus 323 -----------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------- 375 (443)
T PF04053_consen 323 -----------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-------- 375 (443)
T ss_dssp -----------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------
T ss_pred -----------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------
Confidence 22345567888888888877765 556888888888888998888888887543
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 006997 233 VFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDA 291 (622)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 291 (622)
|..|+-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 376 -~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 -FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566666677777777777766666552 34444555556666666666543
No 265
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=1.2 Score=38.86 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHccCCCCCch
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~ 538 (622)
.|.-.+...+++-.+++|.-.++
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred ccHHHHHHHHHHHHhcCCccccc
Confidence 44444555555555555554444
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.26 E-value=0.22 Score=41.10 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-----cCCCCchhH
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVL-----NGLESNRQV 369 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 369 (622)
+...++..+...|++++|...++.+.... +.+...+..+|.++...|+...|.+.|+.+.+ .|++|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455566667777777777777777654 44666777777777777777777777766532 366666544
No 267
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.20 E-value=2.1 Score=38.06 Aligned_cols=241 Identities=18% Similarity=0.233 Sum_probs=132.0
Q ss_pred CCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHhccCC
Q 006997 280 GDLELARRVFDAVLEK-------SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT---SV--RPNEATLATTLSACAELGS 347 (622)
Q Consensus 280 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~ll~~~~~~~~ 347 (622)
..+++|+.-|.++.+- .-.+...++..+.+.+++++.+..|.++..- .+ .-+..+.+.++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3455555555554221 2234455666777777777777777666421 11 2244556666666665555
Q ss_pred hHHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC--------C-------hhHHHHHHHH
Q 006997 348 LSKGKEIEEYIVLN-----GLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK--------D-------LAVWSAMING 407 (622)
Q Consensus 348 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~-------~~~~~~l~~~ 407 (622)
.+....+++.-.+. +-..-..+-+.|...|...+++.+..+++.++... | ...|..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 55555554432221 11112233455777777777777777777665421 1 1356666778
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH-----hccCchHHHHHHHHHhHHhcCC--CCCh---hHHHHHH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSAC-----SHSGMVDDGLSFFKSMQSNFGI--EPSI---EHYLCLV 477 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~l~ 477 (622)
|...++..+-..++++......--|.+... .+++-| .+.|.+++|-.-|-++.+.+.- .|.. --|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888788888888776533334544433 344444 4567888776554444433222 2322 2255666
Q ss_pred HHHHhcCC----hHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006997 478 DLLGRAGR----FDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAK 526 (622)
Q Consensus 478 ~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 526 (622)
+++.++|- ..+| +-....|.......++.+|.. ++..+-++++.
T Consensus 280 NMLmkS~iNPFDsQEA----KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEA----KPYKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHcCCCCCccccc----CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 77777762 1121 011146667778888888855 45444444443
No 268
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.17 E-value=3.6 Score=40.43 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFS 378 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (622)
..-+++..+..+..+.-+..+..+|..-| -+...|..++..|... ..+.-..+|+++.+..+. +...-..|+..|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34445555555555555566666666543 2455555666665555 445555566666555432 3333344444444
Q ss_pred hcCChHHHHHHhccCCCC------Ch---hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCc
Q 006997 379 KCGRINKAKEVFERVPDK------DL---AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGM 449 (622)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 449 (622)
+ ++.+++...|.++... +. ..|..+... -..+.+..+.+..++....|..--...+..+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4 5555555555543310 00 123333221 1245566666666666544444445555556666777777
Q ss_pred hHHHHHHHHHhHH
Q 006997 450 VDDGLSFFKSMQS 462 (622)
Q Consensus 450 ~~~a~~~~~~~~~ 462 (622)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888777664
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.04 E-value=0.042 Score=32.24 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 538 NYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
++..|+.+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788899999999999999998854
No 270
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.02 E-value=0.3 Score=38.69 Aligned_cols=49 Identities=12% Similarity=0.208 Sum_probs=29.7
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH-hCCCCCchhHHHHHHH
Q 006997 227 VTPDLVVFLNLILGCAQVGNLFLALSMHSLLLK-SGYNNEDPLDNLLVSM 275 (622)
Q Consensus 227 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 275 (622)
..|+..+..+++.+++..+++..|.++.+.+.+ .+++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456666666666666666666666666666654 3455555555555543
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.99 E-value=0.19 Score=44.69 Aligned_cols=98 Identities=13% Similarity=0.178 Sum_probs=74.3
Q ss_pred HHHHHhhcC--CCCcchHHHHHHHHHcC-----CChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC-----------
Q 006997 184 ARSIFDEIG--ETSIVSWTTIIGGYVNV-----GNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVG----------- 245 (622)
Q Consensus 184 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 245 (622)
.+..|.... ++|-.+|-..+..+... +..+-....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566555 46777888888777544 567777888999999999999999999999876532
Q ss_pred -----ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 006997 246 -----NLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGD 281 (622)
Q Consensus 246 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (622)
+-+-+.+++++|...|+.||..+-..|++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223467888888888888888888888887776654
No 272
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.97 E-value=7 Score=42.78 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccC
Q 006997 369 VQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSG 448 (622)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 448 (622)
.+.-.++.--+.|-+.+|..++..-.+.--..|.+...-+.....+++|.-.|+..-+ ..-.+.+|...|
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECG 979 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhc
Confidence 3344445555666666666666543333334455555555666777777766666443 223566777777
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEV 500 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 500 (622)
+|.+|..+..++.. +..--..+-..|+..+...++.-+|-++..+....|
T Consensus 980 dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 980 DWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred cHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 78777777765541 111112222456677777777777777777765333
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.86 Score=41.84 Aligned_cols=174 Identities=12% Similarity=0.072 Sum_probs=116.0
Q ss_pred HhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHH----HHHHHHhccCch
Q 006997 378 SKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYT----SILSACSHSGMV 450 (622)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~----~ll~~~~~~g~~ 450 (622)
...|+..+|...++++.+ .|...++-.-.+|..+|+.+.-...++++.. ...||...|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346778888877887774 4777888888899999999999999999875 3356653332 233355688999
Q ss_pred HHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCc----HHhHHHHHHHHHhcCCHHHHHH
Q 006997 451 DDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMPV--EVQ----AQVWAPLLSACMKHHNVELGEY 523 (622)
Q Consensus 451 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~a~~ 523 (622)
++|.+.-++.. .+.| |.-.-.++...+...|+..++.++..+-.. ... ...|-...-.+...+.++.|++
T Consensus 192 ~dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999998887 3444 444556788889999999999999988651 111 1111122233455689999999
Q ss_pred HHHHHH--ccCCCCCch---HHHHHHHHHhcCChHHHH
Q 006997 524 AAKNLL--TLNPGSTGN---YILMANLFTSAGMWKEAA 556 (622)
Q Consensus 524 ~~~~~~--~~~p~~~~~---~~~l~~~~~~~g~~~~A~ 556 (622)
+|+.-+ +++.+++.. |..+-.+..+...+.+-.
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld 306 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLD 306 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHH
Confidence 998643 355556533 333344444444444443
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.93 E-value=1.7 Score=35.47 Aligned_cols=126 Identities=6% Similarity=0.042 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLL 480 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 480 (622)
...++..+...+.+.....+++.+.. .+ ..+....+.++..|++.+ ..+....++. .++.......++.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34456666666777777777777776 44 245556677777776543 3344444431 12223333466666
Q ss_pred HhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 481 GRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKH-HNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 481 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
.+.+.++++.-++.++.. +...+..+... ++++.|.+.+++ ++++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777777777777777641 22222333333 677777777664 235556666665544
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.89 E-value=0.046 Score=33.89 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=28.3
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 536 TGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
|.++..++.+|.+.|++++|+++|+++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45789999999999999999999999988543
No 276
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.79 E-value=0.098 Score=47.75 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=56.8
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 519 (622)
-|.+.|.+++|+..|.... .+.| ++.++..-..+|.+..++..|..-.+.+. ...-...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3556666666666666555 3344 55555555666666666665555555443 1112334444455555668888
Q ss_pred HHHHHHHHHHccCCCCCchH
Q 006997 520 LGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~ 539 (622)
+|.+-++.++++.|++...-
T Consensus 183 EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHhHHHHHhhCcccHHHH
Confidence 88888999999999755433
No 277
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=94.69 E-value=4.8 Score=39.58 Aligned_cols=190 Identities=12% Similarity=0.102 Sum_probs=98.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPD--KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSA 443 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~ 443 (622)
|....-++++.++....++-.+.+..+|.. .+-..|..++.+|..+ ..++-..+|+++.+ ..-|...+..-+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve---~dfnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE---YDFNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH---hcchhHHHHHHHHH
Confidence 333444555555555555555555555542 3344555566666665 44566666666665 33444333333333
Q ss_pred HhccCchHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCcHHhHHHHHHHHH
Q 006997 444 CSHSGMVDDGLSFFKSMQSNFGIEPS------IEHYLCLVDLLGRAGRFDLALKTIHEMP----VEVQAQVWAPLLSACM 513 (622)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~ 513 (622)
+...++.+.+..+|.++.-+ +-|. .+.|..|.... ..+.+..+.+..++. ...-...+.-+..-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33336666666666666543 2221 12333333211 234444444444443 1112233333445556
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh--------------------cCChHHHHHHHHHhh
Q 006997 514 KHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS--------------------AGMWKEAATARGLMD 563 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 563 (622)
...|+++|++++..+++.+..+..+...++.-+.. -.++.++..-|++..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 66777777777777777766666666655555544 456666776666654
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.67 E-value=0.059 Score=49.13 Aligned_cols=88 Identities=14% Similarity=0.031 Sum_probs=75.8
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006997 477 VDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKE 554 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (622)
.+-|.++|++++|++.+.+.. ..| ++..+..-..+|.+...+..|+.-...++.++-.-..+|...+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 456889999999999998876 556 788888888899999999999999999999988777788888888888999999
Q ss_pred HHHHHHHhhh
Q 006997 555 AATARGLMDD 564 (622)
Q Consensus 555 A~~~~~~~~~ 564 (622)
|.+-++..++
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 9887776654
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.65 E-value=0.058 Score=31.05 Aligned_cols=31 Identities=19% Similarity=0.091 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
+|..++..+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666666777777777777777776663
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.47 E-value=1.7 Score=42.65 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=85.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG 484 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 484 (622)
|.-.-+..+...-++.-+++.+ +.||..+...++ +-.......++.+++++..+. | ...+..- ......|
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe---i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE---INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH---hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhccc
Confidence 3333455667777777777777 777764432222 223345578888888877643 1 0000000 0000111
Q ss_pred ChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 485 RFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG--STGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 485 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
..-+ .+.+-...+-..+-..|..++.+.|..++|++.++.+++..|. +-.++..|+.++...+.+.++..++.+-
T Consensus 245 ~~~e---~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 245 HFWE---AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred chhh---hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 1111 1111111233444456777778888888888888888877664 4567888888888888888888888876
Q ss_pred hh
Q 006997 563 DD 564 (622)
Q Consensus 563 ~~ 564 (622)
.+
T Consensus 322 dD 323 (539)
T PF04184_consen 322 DD 323 (539)
T ss_pred cc
Confidence 44
No 281
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.35 E-value=2.6 Score=35.14 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=32.2
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006997 169 NSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRR 224 (622)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 224 (622)
..++..+...|++-+|.++.+....-+......++.+..+.+|...-..+++-..+
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666777777777777665444444445556666666555544444444433
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.34 E-value=0.069 Score=31.30 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 531 (622)
+|..|+..|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888999999999999999996654
No 283
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.06 E-value=2.1 Score=35.19 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=47.7
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEPSIEHY-LCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVEL 520 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 520 (622)
.-...++.+++..++..+. -+.|..... ..-...+.+.|++.+|+.+|+++. ..|....-..|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3345667777777777766 345543322 233455667777778877777776 34444444555555544322222
Q ss_pred HHHHHHHHHccCC
Q 006997 521 GEYAAKNLLTLNP 533 (622)
Q Consensus 521 a~~~~~~~~~~~p 533 (622)
=....+++++..+
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 2333444455444
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.04 E-value=0.39 Score=39.34 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 513 MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
.+.++.+.++.++..+.-+.|+.+..-..-++++...|+|.+|..+|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34455566666666555566655555555566666666666666666655443
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.93 E-value=0.077 Score=30.50 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=25.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
.++..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987643
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.84 E-value=0.41 Score=38.45 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 513 MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
...++.++++.++..+.-+.|+.+..-..-++++...|+|++|..+|+.+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3477888888888888888888888888888888888888888888888876543
No 287
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.64 E-value=0.55 Score=41.96 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=67.0
Q ss_pred HHHHhccCCCCCCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh--------------
Q 006997 84 SRKVLDEMPVRLRSVVSWNSIISAHSRA-----CLNDEAILVLKEMWVLGLELSASTFVSVVSGCS-------------- 144 (622)
Q Consensus 84 A~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------------- 144 (622)
.+..|...+....+-.+|-+.+..+... +.++=....++.|.+.|+.-|..+|..||..+-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 3455665554456667777777766543 556667777889999999999999999988764
Q ss_pred ------hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCC
Q 006997 145 ------FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGK 180 (622)
Q Consensus 145 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 180 (622)
...+..+++.|...|+.| |..+-..|++++.+.+.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMP-DKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCC-chHHHHHHHHHhccccc
Confidence 345666677777777766 66666666666666554
No 288
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=93.58 E-value=0.076 Score=41.36 Aligned_cols=38 Identities=47% Similarity=0.726 Sum_probs=30.4
Q ss_pred CceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCcccCCCCC
Q 006997 572 GWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLLEAGYIAEADIV 621 (622)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~pd~~~~ 621 (622)
|++|.++ +.|++++.+||+. .+..+++..||.|+++.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~ 39 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEV 39 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhh
Confidence 6788765 8999999999998 445667778888887654
No 289
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.52 E-value=0.1 Score=30.04 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
.+|..+|.+|..+|++++|+..|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999988744
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.46 E-value=2.2 Score=36.19 Aligned_cols=87 Identities=10% Similarity=0.022 Sum_probs=40.3
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCcHHhHHH-----HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006997 478 DLLGRAGRFDLALKTIHEMPVEVQAQVWAP-----LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMW 552 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (622)
..+..+|++++|...++.....|....+.. |.......|.+++|...++...+-.= .+......|+++...|+-
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k 175 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCch
Confidence 344555555555555554432222222222 23334445555555555443322110 112234456666666666
Q ss_pred HHHHHHHHHhhhC
Q 006997 553 KEAATARGLMDDR 565 (622)
Q Consensus 553 ~~A~~~~~~~~~~ 565 (622)
++|+..|++..+.
T Consensus 176 ~~Ar~ay~kAl~~ 188 (207)
T COG2976 176 QEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655553
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.44 E-value=4.2 Score=35.09 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHH
Q 006997 398 LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCL 476 (622)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 476 (622)
+..||-+.--+...|+++.|.+.|+...+ +.|.- .+...-.-++.-.|++.-|.+-+-..-+. .|+. -|.+|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~D-PfR~L 171 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPND-PFRSL 171 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCC-hHHHH
Confidence 34666666666777788888888777776 55542 22222222344567777777666555433 2321 12222
Q ss_pred HHHH-HhcCChHHHHHHH-HhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------CchHHHHHHHHH
Q 006997 477 VDLL-GRAGRFDLALKTI-HEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS-------TGNYILMANLFT 547 (622)
Q Consensus 477 ~~~~-~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~ 547 (622)
.--+ .+.-++.+|..-+ ++.. ..+..-|...+-.+.- |... .+.+++++.+-..++ .++|.-|+.-|.
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 1111 1223455554443 3333 3333334332222211 1111 122333333322222 357888999999
Q ss_pred hcCChHHHHHHHHHhhhC
Q 006997 548 SAGMWKEAATARGLMDDR 565 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~ 565 (622)
..|+.++|..+|+.....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999987764
No 292
>PRK10941 hypothetical protein; Provisional
Probab=93.40 E-value=0.52 Score=43.07 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.+.+-.++.+.++++.|..+.+.++.+.|+++.-+...|-+|.+.|.+..|..-++...+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 456777889999999999999999999999999999999999999999999999998877543
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.38 E-value=4 Score=33.85 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=79.4
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHH-----HHHH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLV-----DLLG 481 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-----~~~~ 481 (622)
+.+.+..++|+.-|..+.+ .|...-+. ..........+.|+...|...|+++-.. .|.+....-+. -.+.
T Consensus 68 lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 68 LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHh
Confidence 3566778888888888887 55443222 2333444567788899999999888744 44433333222 2356
Q ss_pred hcCChHHHHHHHHhCCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 482 RAGRFDLALKTIHEMPVEVQ---AQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
..|.++....-++-+..+.+ ...-..|.-+-.+.|++..|...|+++..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 78888888888777652222 33455677777888999999998888876
No 294
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=1.8 Score=38.03 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=9.6
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 006997 406 NGYAIHGMGDQALNLFYKMQ 425 (622)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~ 425 (622)
.+|...+++++|...+.+..
T Consensus 39 vafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHhhccHHHHHHHHHHHH
Confidence 34444455555555444444
No 295
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.70 E-value=4 Score=32.09 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=73.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 006997 308 AQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAK 387 (622)
Q Consensus 308 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (622)
.-.|..++..++..+.... .+..-++.++.-....-+-+...++++.+-+. .|. ..+|++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence 4456777777777776653 24444555554444444444444444443322 111 1233333333
Q ss_pred HHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCC
Q 006997 388 EVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGI 466 (622)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 466 (622)
..+-.+- .+.......+......|+-+.-.+++..+.+ +-.|++.....+..+|.+.|+..++.+++.++.++ |+
T Consensus 77 ~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3332222 1233445566777888888888888888763 34577777888888899999998888888888866 54
No 296
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.66 E-value=0.18 Score=26.83 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=19.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 006997 537 GNYILMANLFTSAGMWKEAATARG 560 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~ 560 (622)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788888899999999888775
No 297
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.56 E-value=1.1 Score=37.88 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=65.9
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhc
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEPS-----IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKH 515 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~ 515 (622)
-+...|++++|..-|..++.. .++. ...|..-..++.+.+.++.|++-..+.. ..|. ...+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 345667777777777776643 2222 2344455566777888888887777765 3332 33343445577778
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
..++.|++-|+++++.+|....+....+.+
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 889999999999999999765555544443
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.51 E-value=0.23 Score=41.32 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006997 518 VELGEYAAKNLLTLNPGSTGNYILMANLFTSAG 550 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (622)
+++|+.-|++++.++|+...++.++|.+|...|
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 345556666666677776777777777765543
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.46 E-value=0.021 Score=47.03 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCc
Q 006997 35 LVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLN 114 (622)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 114 (622)
.++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++... . .-...++..|-+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c---cCHHHHHHHHHhcchH
Confidence 4567777788888888888888877656678888999999999988888888888443 1 3335566666667777
Q ss_pred hHHHHHHHHHH
Q 006997 115 DEAILVLKEMW 125 (622)
Q Consensus 115 ~~A~~~~~~m~ 125 (622)
++|.-++.++.
T Consensus 87 ~~a~~Ly~~~~ 97 (143)
T PF00637_consen 87 EEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHcc
Confidence 77777666543
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.45 E-value=0.14 Score=29.05 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 538 NYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
++..++.++.+.|++++|.+.|+++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45667777777777777777777776643
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.37 E-value=0.018 Score=47.40 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=57.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHH
Q 006997 338 TLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQA 417 (622)
Q Consensus 338 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 417 (622)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666677777777788887766566788888888889888887888888874333 2233455566666666666
Q ss_pred HHHHHHhHH
Q 006997 418 LNLFYKMQH 426 (622)
Q Consensus 418 ~~~~~~~~~ 426 (622)
.-++.++..
T Consensus 90 ~~Ly~~~~~ 98 (143)
T PF00637_consen 90 VYLYSKLGN 98 (143)
T ss_dssp HHHHHCCTT
T ss_pred HHHHHHccc
Confidence 666665443
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=4.3 Score=33.67 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHH---HHH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIE-HYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWA---PLL 509 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~---~l~ 509 (622)
..|...+. ..+.+..++|+.-|..+.+. |...=+. ..-.........|+..+|...|+++. ..|.+.... .|-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444443 34567889999999988754 3322111 11123345678899999999999986 333333332 222
Q ss_pred H--HHHhcCCHHHHHHHHHHHHc-cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 510 S--ACMKHHNVELGEYAAKNLLT-LNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 510 ~--~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
. .+..+|.++......+.+.. -+|-.......|+-.-.+.|++.+|.+.|+.+.+
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 2 34567888887776665543 4555566778899999999999999999998876
No 303
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.39 Score=41.77 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=47.8
Q ss_pred CChHHHHHHHHhCC-CCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006997 484 GRFDLALKTIHEMP-VEVQAQV-WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGL 561 (622)
Q Consensus 484 g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (622)
.+++.|+..+.+.. ..|...+ |..=+..+.+..+++.+..-..+++++.|+....++.++..+.....+++|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34455555554443 4555433 334444555566666666666677777776666666777777777777777766666
Q ss_pred h
Q 006997 562 M 562 (622)
Q Consensus 562 ~ 562 (622)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 5
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.20 E-value=0.96 Score=29.22 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHcCc
Q 006997 538 NYILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLLEAGY 614 (622)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 614 (622)
..+.++-.+.+.|++++|.+..+.+.+. .|...++......+.+.|+++|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567788899999999999999999873 55666666666777888888874
No 305
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.20 E-value=15 Score=37.35 Aligned_cols=112 Identities=23% Similarity=0.148 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCchhHH-HHHHHHHhcCCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCChHHH
Q 006997 245 GNLFLALSMHSLLLKSGYNNEDPLDN-LLVSMYTKCGDLELARRVFDAVLEK-------SVFLWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a 316 (622)
.+.+.+.+++..+.++ -|+...|. .-...+...|++++|.+.|+..... ....+--+...+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556667777766665 33433332 3345566677888888887765431 123344456667778889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCh-------HHHHHHHHHHH
Q 006997 317 VNLFKRLLKTSVRPNEATLATTLSAC-AELGSL-------SKGKEIEEYIV 359 (622)
Q Consensus 317 ~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~ 359 (622)
...|..+.+.. ..+..+|.-+..+| ...++. ++|.+++.++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 98888888753 33445555444433 445555 66666666553
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.10 E-value=18 Score=38.21 Aligned_cols=54 Identities=9% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 476 LVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
++..+.+..+.+.+..+.+... +.++..|..++..+.+.+..+.-.+...++++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 4556667777778888777776 33677788888888877766666655555543
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.77 E-value=0.77 Score=41.86 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.++..++..+...|+++.+...++++++.+|-+-..|..+...|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666666777777777777777777777777777777777777777777777777655
No 308
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.64 E-value=19 Score=37.51 Aligned_cols=212 Identities=11% Similarity=0.070 Sum_probs=105.1
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-cCChHHHHHHhccCCCC-ChhHHHHHHHHHH----HcCCHHHHHHH
Q 006997 347 SLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK-CGRINKAKEVFERVPDK-DLAVWSAMINGYA----IHGMGDQALNL 420 (622)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~ 420 (622)
+.+.|..++....+.|. |+....-..+..... ..+...|.++|...-.. .+..+-.+...|. ...+...|..+
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 44556666666655552 222222211111111 23455666666655432 2222222222221 12356777777
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHH---Hh----cCChHHHHHHH
Q 006997 421 FYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLL---GR----AGRFDLALKTI 493 (622)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~~ 493 (622)
+.+..+ .| .|-..--...+..+.. +.++.+.-.+..+... |.+-....-..+.... .. ..+.+.+...+
T Consensus 387 ~k~aA~-~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (552)
T KOG1550|consen 387 YKKAAE-KG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLY 462 (552)
T ss_pred HHHHHH-cc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHH
Confidence 777776 55 3332222223333333 5555555554444432 2221111111111111 11 12455566666
Q ss_pred HhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc-C--ChHHHHHHHHHhhhCC
Q 006997 494 HEMPVEVQAQVWAPLLSACMK----HHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA-G--MWKEAATARGLMDDRR 566 (622)
Q Consensus 494 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 566 (622)
.+....-+......+...|.. ..+++.|...|.++.+.. +.....++.++..- | .+..|.+++++..+.+
T Consensus 463 ~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 463 SRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 665545555555566655533 346888888888887766 67777888887652 2 2688888888876643
No 309
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.58 E-value=0.34 Score=27.74 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998876
No 310
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.52 E-value=1 Score=33.22 Aligned_cols=46 Identities=22% Similarity=0.165 Sum_probs=35.3
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 522 EYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
...+++.++.+|+|......++..+...|++++|.+.+-.+.+++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 4566777888888888888999999999999999888888876543
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.41 E-value=10 Score=36.89 Aligned_cols=67 Identities=24% Similarity=0.231 Sum_probs=57.5
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC----CCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 499 EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP----GSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
.....+|..++..+++.|.++.|...+.++...++ ..+.+....+..+...|+..+|...++...+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34467899999999999999999999999988652 25678888899999999999999999988873
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.37 E-value=0.36 Score=27.29 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLTLNPGS 535 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 535 (622)
+-.++.++.+.|+.++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777888899999999999999988853
No 313
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.35 E-value=12 Score=34.80 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=25.3
Q ss_pred HHHHHHHHHhccCChHHH---HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 006997 334 TLATTLSACAELGSLSKG---KEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVP 394 (622)
Q Consensus 334 ~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 394 (622)
++..++.++...+..+.. ..+++.+... .+..+.++..-+..+.+.++.+.+.+.+.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 344455555555444333 2333333221 12223333333444444555555555555544
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.85 E-value=14 Score=34.48 Aligned_cols=21 Identities=19% Similarity=-0.010 Sum_probs=14.8
Q ss_pred HHHHHhcCChHHHHHHHHHhh
Q 006997 543 ANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~ 563 (622)
+....+.++|++|.+.|+...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 455677788888888877543
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.84 E-value=0.54 Score=28.42 Aligned_cols=27 Identities=15% Similarity=-0.011 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444455555555555554443
No 316
>PRK09687 putative lyase; Provisional
Probab=90.73 E-value=14 Score=34.37 Aligned_cols=68 Identities=10% Similarity=-0.152 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 468 PSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 468 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
++..+-...+.++.+.|+. .|+..+-+....++ .....+.+....|+. +|...+.++++.+| |+.+..
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~ 271 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIIT 271 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHH
Confidence 3444444445555555542 33333332221222 122344455555553 45555555555555 333333
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.72 E-value=0.76 Score=39.40 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~ 519 (622)
.|-+.|-+.-|+--|.+.. .+.|+ +.+||-|.--+...|+++.|.+.|+... .+|. ..+...-+-++.--|+++
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 3566677777777777666 45665 5667777777777777777777777765 3333 112111111223346777
Q ss_pred HHHHHHHHHHccCCCCC
Q 006997 520 LGEYAAKNLLTLNPGST 536 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~ 536 (622)
.|.+-+.+--+.+|++|
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 77777777777777655
No 318
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.72 E-value=0.97 Score=41.25 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=60.2
Q ss_pred hhHHHHHHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHH-----cCCCCChhhH
Q 006997 66 FVQTGLIDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAHSRACLNDEAILVLKEMWV-----LGLELSASTF 136 (622)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~t~ 136 (622)
.++..++..+..+|+.+.+.+.++++... +-+...|..++.+|.++|+...|+..|+.+.+ .|+.|...+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45667888889999999999999988766 67888999999999999999999999999875 4677765544
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.56 E-value=1.4 Score=32.29 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHH
Q 006997 13 ETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVL 57 (622)
Q Consensus 13 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 57 (622)
+..+-++.+...++-|++....+.|++|.+.+|+..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455555666666667777777777777777777776655
No 320
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.41 E-value=10 Score=32.31 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=65.9
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCCCCCcHHh--HHHHHHH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYL-----CLVDLLGRAGRFDLALKTIHEMPVEVQAQV--WAPLLSA 511 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~ 511 (622)
.+...+...|++++|...++.... .|....+. .|.+.....|++++|++.++... .++-.. ...-+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhH
Confidence 344567788999999999887763 23323333 35567788999999999999876 333222 3334567
Q ss_pred HHhcCCHHHHHHHHHHHHccCCC
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
+...|+-++|+..|+++++.++.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 88999999999999999998753
No 321
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.21 E-value=0.21 Score=45.95 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=64.5
Q ss_pred hcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006997 482 RAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (622)
..|.+++|++.+...+ .++....+..-.+++.+.+....|++-+..+++++|+...-|-.-+.+..-+|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4566777777777665 33334445555666777788888888888888888888888888888888888888888888
Q ss_pred HHhhhCCCcc
Q 006997 560 GLMDDRRLTK 569 (622)
Q Consensus 560 ~~~~~~~~~~ 569 (622)
....+.+...
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 8887766543
No 322
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=1.6 Score=38.35 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
+.++-+++...|++-++++....++...|+|..+|+..+.+....=+.++|..-|.++++.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 33444556678999999999999999999999999999999999999999999999888743
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.85 E-value=7.5 Score=33.18 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHH--H
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA--VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYL--C 475 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~ 475 (622)
.+..+..-|++.|+.+.|++.|.++.+ ....|.. ..+..+++.....+++..+.....++........+...-+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 344455566666666666666666665 4434432 2345556666666666666666655543211111111111 1
Q ss_pred HH--HHHHhcCChHHHHHHHHhCC
Q 006997 476 LV--DLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 476 l~--~~~~~~g~~~~A~~~~~~~~ 497 (622)
.. -.+...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 12234567777777766654
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.69 E-value=0.59 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.++..++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678999999999999999999999876
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.56 E-value=1.5 Score=32.51 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=22.2
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHh
Q 006997 17 TYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKV 59 (622)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 59 (622)
-++.+-..++-|++....+.|++|.+.+|+..|.++++-+...
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444455666666666666666666666666666655543
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.45 E-value=0.77 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
|..++..+...++++.|...++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444444555555555555555555444
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.44 E-value=8.8 Score=40.45 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=35.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCCchhHHHHHHHHHh---
Q 006997 203 IGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSG-YNNEDPLDNLLVSMYTK--- 278 (622)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 278 (622)
...+.-.|+++.|++.+-. ..+...|.+++...+..+.-.+-.+... ..+.... -.|...-+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445557788888877766 2233455666655555544332222211 2222211 01111445566666654
Q ss_pred cCCHHHHHHHHhhcC
Q 006997 279 CGDLELARRVFDAVL 293 (622)
Q Consensus 279 ~~~~~~a~~~~~~~~ 293 (622)
..+...|.+.|--+.
T Consensus 340 ~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 340 ITDPREALQYLYLIC 354 (613)
T ss_dssp TT-HHHHHHHHHGGG
T ss_pred ccCHHHHHHHHHHHH
Confidence 356777777776553
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.34 E-value=1.3 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
.-.+.-++.+.|+++.|.+..+.+++.+|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3446667889999999999999999999987655443
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.20 E-value=10 Score=30.71 Aligned_cols=52 Identities=6% Similarity=-0.022 Sum_probs=33.8
Q ss_pred ccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC
Q 006997 42 NINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR 94 (622)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 94 (622)
...+++.+..+++.|.-.. +.....-..-...+...|++.+|.++|+++...
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4677788888888777664 222222223344566778888888888888754
No 330
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.89 E-value=0.71 Score=44.77 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=59.9
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCcHHhHHHH-HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006997 479 LLGRAGRFDLALKTIHEMP-VEVQAQVWAPL-LSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
.+...+.++.|..++.++. ..|+-..|-+. ..++.+.+++..|..-+.++++++|.....|..-+.++.+.+++.+|.
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHH
Confidence 3445566666666666665 45553333222 256677788888888888888888887888888888888888888888
Q ss_pred HHHHHhhh
Q 006997 557 TARGLMDD 564 (622)
Q Consensus 557 ~~~~~~~~ 564 (622)
..|++...
T Consensus 93 ~~l~~~~~ 100 (476)
T KOG0376|consen 93 LDLEKVKK 100 (476)
T ss_pred HHHHHhhh
Confidence 88876543
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.87 E-value=1.4 Score=43.79 Aligned_cols=100 Identities=14% Similarity=0.037 Sum_probs=70.0
Q ss_pred hccCchHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHH
Q 006997 445 SHSGMVDDGLSFFKSMQSNFGIEPS--IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVEL 520 (622)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 520 (622)
...|+...|...+..+. ...|. -.....|.+.+.+.|..-+|-.++.+.. ....+.++..++.++....|+++
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 44678888888877766 34552 2334456677777777777777776543 33345567777888888888888
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 521 GEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
|++.+++++.++|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 888888888888888877777765544
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.87 E-value=2.4 Score=36.30 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHHHHHhcCChHHHH
Q 006997 487 DLALKTIHEMPVEV--QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG----STGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 487 ~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
++|.+.|-.+...| +....-..+.+|....|.++++.++-+++++.+. |+.++..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45666665554222 2223333444455567888888888888885432 5788888888898888888773
No 333
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.24 E-value=5.9 Score=38.58 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=36.8
Q ss_pred HhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CcHHhHHHHHHHHHhcCCHHHH
Q 006997 444 CSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VE-VQAQVWAPLLSACMKHHNVELG 521 (622)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a 521 (622)
+...|+++.+.+.+..... -+.....+..++++.....|++++|..+-+-|. .+ .++.............|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3444555555555544431 112233444445555555555555555544443 11 1111121122222334445555
Q ss_pred HHHHHHHHccCC
Q 006997 522 EYAAKNLLTLNP 533 (622)
Q Consensus 522 ~~~~~~~~~~~p 533 (622)
.-.+++++.++|
T Consensus 411 ~~~wk~~~~~~~ 422 (831)
T PRK15180 411 YHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccCC
Confidence 555555555444
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.95 E-value=40 Score=35.72 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=27.8
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcC
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNV 209 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 209 (622)
+.++| ++|-.+.|+|++++|.++..+... .....+-..+..|...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 33444 466678899999999999933322 3334555666666554
No 335
>PRK09687 putative lyase; Provisional
Probab=87.91 E-value=23 Score=32.98 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSAC 444 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~ 444 (622)
+..+-...+.++.+.|+.+-...+.+.+..++ .....+.++...|.. +|...+..+.+ -.||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~---~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY---KFDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh---hCCChhHHHHHHHHH
Confidence 44444445555555555333333333333222 122344555555553 45555555554 334554444444443
No 336
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.84 E-value=6.5 Score=33.57 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCChHHHHHHHHHHHH
Q 006997 198 SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDL--VVFLNLILGCAQVGNLFLALSMHSLLLK 259 (622)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (622)
.+..+...|.+.|+.+.|++.|.++++....+.. ..+..+++.+...+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666667777777777777776665433332 2345556666666666666666555543
No 337
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.81 E-value=24 Score=33.10 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006997 212 VNEAFGLCNQMRRMSVTPDLVVFLNLIL 239 (622)
Q Consensus 212 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 239 (622)
..++.++++.+.+.|+++....|..+.-
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3467778888888888877777655443
No 338
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.71 E-value=24 Score=33.17 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc--cC----ChHHHHHHHHHHHHh
Q 006997 212 VNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ--VG----NLFLALSMHSLLLKS 260 (622)
Q Consensus 212 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 260 (622)
+++.+.+++.|.+.|.+-+..+|.+..-.... .. ....+..+|+.|++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 34556777888888887777666553333322 12 244567777777764
No 339
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.54 E-value=7.7 Score=35.66 Aligned_cols=99 Identities=9% Similarity=0.178 Sum_probs=75.0
Q ss_pred hCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 006997 260 SGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK---------SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRP 330 (622)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 330 (622)
.|.+.+..+...++..-....+++.+...+-++... ...+|-.++ -.-++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 456667777777777777778888888877666432 233333333 3447789999999989999999
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 006997 331 NEATLATTLSACAELGSLSKGKEIEEYIVLNG 362 (622)
Q Consensus 331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 362 (622)
|..+++.+|..+.+.+++..|.++.-.+....
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877776543
No 340
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.41 E-value=0.99 Score=25.93 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=15.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHH
Q 006997 364 ESNRQVQTSLIHMFSKCGRINKAK 387 (622)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~ 387 (622)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666666666666666666654
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.22 E-value=1.8 Score=36.20 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCcc
Q 006997 518 VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTK 569 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 569 (622)
+++|...|+++...+|++......| .+. ++|=++..++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHhhh
Confidence 6778888888999999665444333 332 35666777776665433
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.13 E-value=7.8 Score=30.70 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=33.1
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 467 EPSIEHYLCLVDLLGRAGR---FDLALKTIHEMP--VEVQ--AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 467 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
.++..+--.+..++.++.+ ..+.+.++++.. ..|+ .....-|.-++.+.++++.+.++.+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 4444444455555555443 333444444443 1121 22233344455555566666666665555555443
No 343
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.08 E-value=17 Score=30.50 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=77.7
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC--CHHHHHHHHhhcC
Q 006997 216 FGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCG--DLELARRVFDAVL 293 (622)
Q Consensus 216 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 293 (622)
.++++.+.+.+++|+...+..+++.+.+.|.+... .+++..++-+|.......+-.+.... -.+-+.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 35566666778888888888888888888876554 33444454555444443332222211 1334455555443
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 006997 294 EKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVL 360 (622)
Q Consensus 294 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 360 (622)
..+..++..+...|++-+|++..++.... +......++.+..+.+|...-..+++...+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888887765322 222234456666666666555555555544
No 344
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.75 E-value=26 Score=32.26 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006997 159 GLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLI 238 (622)
Q Consensus 159 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 238 (622)
+...+++.....+...|.+.|++.+|+..|-.-..++...+-.++......|...++ |...-..+
T Consensus 84 ~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaV- 148 (260)
T PF04190_consen 84 SYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAV- 148 (260)
T ss_dssp S-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHH-
Confidence 345558888889999999999999998877654444333332233333333332222 11111222
Q ss_pred HHHhccCChHHHHHHHHHHHHh
Q 006997 239 LGCAQVGNLFLALSMHSLLLKS 260 (622)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~ 260 (622)
-.|...+++..|...+....+.
T Consensus 149 L~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 149 LQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 2345567788888777666544
No 345
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.65 E-value=1.3 Score=27.28 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 540 ILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
..|+.+|.+.|+.+.|+++++.+...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999988863
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.62 E-value=2.8 Score=37.01 Aligned_cols=64 Identities=13% Similarity=-0.026 Sum_probs=46.0
Q ss_pred HhHHHHHHHHHhcCCHH-------HHHHHHHHHHccC--CC----CCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 503 QVWAPLLSACMKHHNVE-------LGEYAAKNLLTLN--PG----STGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
..+..+.+.|+..|+.+ .|.+.|+++.+.. |. ...+.+.+|.+..+.|++++|.+.|.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 35566777788777744 4555555555432 22 24678889999999999999999999998743
No 347
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.32 E-value=49 Score=35.15 Aligned_cols=80 Identities=11% Similarity=-0.126 Sum_probs=46.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCCchHHHHHHHHHhcCChH
Q 006997 477 VDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLN---PGSTGNYILMANLFTSAGMWK 553 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 553 (622)
+..+...|...+|...+..+....+......+.......|..+.++....+....+ -.-|..|......+.+.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34456678888888777766534455555566666667788887777665443211 112334555555555555555
Q ss_pred HHH
Q 006997 554 EAA 556 (622)
Q Consensus 554 ~A~ 556 (622)
.+.
T Consensus 494 ~~l 496 (644)
T PRK11619 494 QSY 496 (644)
T ss_pred HHH
Confidence 544
No 348
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.15 E-value=5.2 Score=36.30 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
++.....|...|.+.+|.++.++++.++|-+.+.+-.+...|...|+--+|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444556788999999999999999999999999999999999999999999988887754
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.02 E-value=54 Score=35.28 Aligned_cols=222 Identities=14% Similarity=-0.007 Sum_probs=119.2
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCch-------hHHHHHH-HHHHhcCChHHHHHHhccCCC--------CChhHHHHH
Q 006997 341 ACAELGSLSKGKEIEEYIVLNGLESNR-------QVQTSLI-HMFSKCGRINKAKEVFERVPD--------KDLAVWSAM 404 (622)
Q Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l 404 (622)
......++++|..+..++...-..|+. ..++.+- ..-...|++++|.++.+.... .....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345667888888888877654323221 1223221 223456888888887765442 355677778
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHH---HHH--HHHHhccCchHH--HHHHHHHhHHhcCC-CC----ChhH
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVEGLKPDAVVY---TSI--LSACSHSGMVDD--GLSFFKSMQSNFGI-EP----SIEH 472 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~---~~l--l~~~~~~g~~~~--a~~~~~~~~~~~~~-~p----~~~~ 472 (622)
..+..-.|++++|..+.+...+ ..-.-+...+ ..+ ...+...|.... ....+......+.. .| -..+
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 8888889999999988887766 3222233222 222 224556673332 33333333222111 11 1233
Q ss_pred HHHHHHHHHh-cCChHHHHHHHHhCC-CCCc--HHhH--HHHHHHHHhcCCHHHHHHHHHHHHccCCCC-Cch-HHH---
Q 006997 473 YLCLVDLLGR-AGRFDLALKTIHEMP-VEVQ--AQVW--APLLSACMKHHNVELGEYAAKNLLTLNPGS-TGN-YIL--- 541 (622)
Q Consensus 473 ~~~l~~~~~~-~g~~~~A~~~~~~~~-~~~~--~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~-~~~--- 541 (622)
...+..++.+ .+...++..-++--. ..|. .... ..|+......||.++|.....++..+..+. +.+ |..
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 3344444444 122222222222211 2222 2222 256667788999999999999887754322 222 221
Q ss_pred H--HHHHHhcCChHHHHHHHHHhh
Q 006997 542 M--ANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 542 l--~~~~~~~g~~~~A~~~~~~~~ 563 (622)
. ......+||..+|.....+-.
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhcc
Confidence 1 222355799999988887643
No 350
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.75 E-value=8.4 Score=35.42 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=68.3
Q ss_pred cCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-CCh-----hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH
Q 006997 361 NGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD-KDL-----AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA 434 (622)
Q Consensus 361 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 434 (622)
.|.+.+..+...++..-....+++.+...+-++.. |+. .+-...+.. +..-++++++.++..=.+ .|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcch-hccccch
Confidence 34455555556666666666778888877766653 211 011112222 233467788888887777 8999999
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHh
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 463 (622)
+++..+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999888887766643
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.47 E-value=25 Score=31.03 Aligned_cols=150 Identities=11% Similarity=0.148 Sum_probs=74.4
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHhccCChHH
Q 006997 276 YTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLK----TSVRPNEA-TLATTLSACAELGSLSK 350 (622)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~-~~~~ll~~~~~~~~~~~ 350 (622)
+.-.+.+++|.++|.+. ...|--..+|+.|-..|.+.-+ .|-+.|.. +|..... |.+..++++
T Consensus 24 fgg~~k~eeAadl~~~A-----------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~e 91 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA-----------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPEE 91 (288)
T ss_pred cCCCcchHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChHH
Confidence 44445677777766542 3455555666666555555432 22222222 2322222 233335555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHhHHhc-
Q 006997 351 GKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIH-GMGDQALNLFYKMQHVE- 428 (622)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~- 428 (622)
|...++. -|+.|...|++..|-...-++ ...|-.. .++++|+..|+..-+..
T Consensus 92 Av~cL~~---------------aieIyt~~Grf~~aAk~~~~i-----------aEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 92 AVNCLEK---------------AIEIYTDMGRFTMAAKHHIEI-----------AEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHHHHH---------------HHHHHHhhhHHHHHHhhhhhH-----------HHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 5444433 345666777776665544332 2222221 35556666666554411
Q ss_pred CCCCCH---HHHHHHHHHHhccCchHHHHHHHHHhHHh
Q 006997 429 GLKPDA---VVYTSILSACSHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 429 ~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 463 (622)
|-..+. ..+.-+...-...+++.+|+.+|+++...
T Consensus 146 ~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 146 GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 22333334445678889999999988754
No 352
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.42 E-value=15 Score=37.14 Aligned_cols=151 Identities=18% Similarity=0.085 Sum_probs=95.7
Q ss_pred hcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 006997 379 KCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFK 458 (622)
Q Consensus 379 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 458 (622)
-.|+++.|..++-.++++. .+.++.-+-+.|-.++|++ +.+|+.- -.....+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~----------~s~D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALE----------LSTDPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchhh---hhhHHhHhhhccchHhhhh----------cCCChhh---hhhhhhhcCcHHHHHHHHH
Confidence 4577777777776666322 2334444555666666554 3333321 1223346688888887765
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 006997 459 SMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 459 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 538 (622)
+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+.-..+...+.+...+
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---- 724 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN---- 724 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhccc----
Confidence 443 45668888898889999999998888765 2556666666777766555555554443332
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 539 YILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
+....+|...|+++++.+++.+-.
T Consensus 725 -N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 725 -NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred -chHHHHHHHcCCHHHHHHHHHhcC
Confidence 333456788999999999887653
No 353
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.33 E-value=8.1 Score=28.51 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006997 413 MGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVD 478 (622)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 478 (622)
+.-++.+-+..+.. ..+-|++......+++|.+.+++..|.++++-++.+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 33455555566555 66788888899999999999999999999988775532 24445655543
No 354
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.18 E-value=8 Score=38.97 Aligned_cols=75 Identities=24% Similarity=0.235 Sum_probs=36.4
Q ss_pred HhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 006997 176 AKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHS 255 (622)
Q Consensus 176 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 255 (622)
.+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3445555555544332 2344455566666666666666655554433 2334444444455444444444
Q ss_pred HHHHhC
Q 006997 256 LLLKSG 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
...+.|
T Consensus 717 ~~~~~g 722 (794)
T KOG0276|consen 717 LAKKQG 722 (794)
T ss_pred HHHhhc
Confidence 444433
No 355
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.85 E-value=8.2 Score=28.82 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006997 416 QALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVD 478 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 478 (622)
+..+-+..+.. ..+-|++......+.+|.+.+++..|.++++-++.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 45555555555 66788999999999999999999999999998887633 33336666654
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.59 E-value=4.3 Score=35.13 Aligned_cols=64 Identities=14% Similarity=-0.032 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 473 YLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
.+.-+..+.+.++..+|+...+.-. .+| +..+-..++..++..|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445667778888888888876543 334 455666788888889999999988888888888643
No 357
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.48 E-value=1.8 Score=24.09 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999999889888888877654
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.40 E-value=1.7 Score=23.70 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
..+..++.++...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999987653
No 359
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.07 E-value=61 Score=34.27 Aligned_cols=170 Identities=11% Similarity=0.028 Sum_probs=99.0
Q ss_pred HHHhhcCCChhHHHHHhccCCCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhh
Q 006997 72 IDMYSKCSDFVSSRKVLDEMPVRLR---SVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQG 148 (622)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 148 (622)
++.+.+.+.+++|+...+......+ -...+...|..+.-.|++++|-...-.|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn--------------------- 421 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN--------------------- 421 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---------------------
Confidence 5677888899999999888775533 2345788888899999999998888888653
Q ss_pred HHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 006997 149 ISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE-TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSV 227 (622)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 227 (622)
+..-|.--+..+...|+......++-.-+. -+...|..++..+.. .+. .-|.+.+.
T Consensus 422 ---------------~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~--- 478 (846)
T KOG2066|consen 422 ---------------NAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIK--- 478 (846)
T ss_pred ---------------hHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHH---
Confidence 333344444445555554443333222221 234567777777776 222 22333322
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCH
Q 006997 228 TPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSV 297 (622)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 297 (622)
..+...|..+...-+...++.+ . ..+......|+..|...++++.|..++-.+.++++
T Consensus 479 ~Wp~~Lys~l~iisa~~~q~~q----------~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 479 EWPGHLYSVLTIISATEPQIKQ----------N--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hCChhhhhhhHHHhhcchHHHh----------h--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 2233334333222111111111 1 12223334488889999999999999888877654
No 360
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=84.02 E-value=1.9 Score=37.49 Aligned_cols=57 Identities=16% Similarity=0.138 Sum_probs=47.5
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLT 568 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (622)
..+.+|.+.+.+++.+++++.|+....|..++..-.+.|+++.|.+.+++..+-++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345678888888999999999988888899998888999999999988888775543
No 361
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.83 E-value=8.9 Score=28.47 Aligned_cols=80 Identities=13% Similarity=0.144 Sum_probs=59.9
Q ss_pred CChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 006997 44 NSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKE 123 (622)
Q Consensus 44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 123 (622)
...++|..|-+.+...+ .....+--..++.+...|++++|..+.+... .||...|-+|-.. +.|-.+++..-+.+
T Consensus 19 HcHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 19 HCHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred hHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 35678888888777654 2244444555677889999999999999998 8999999888764 56766777777777
Q ss_pred HHHcC
Q 006997 124 MWVLG 128 (622)
Q Consensus 124 m~~~~ 128 (622)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 77665
No 362
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=83.64 E-value=4.7 Score=36.75 Aligned_cols=53 Identities=17% Similarity=0.024 Sum_probs=42.1
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..+.|+.++|..+|+.++.+.|.++.+...+|.......++-+|-.+|-+...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 34678888888888888888888888888888888777888888888776544
No 363
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.54 E-value=50 Score=32.90 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHh-hcCCChhHHHHHhccC
Q 006997 13 ETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMY-SKCSDFVSSRKVLDEM 91 (622)
Q Consensus 13 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~ 91 (622)
....+|+....+ ..-|+..|..-+.-|.+.+.+.+...+|..|+... +.++..|-.-.... -....++.|+.+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 344555555543 33367777777777777777777777888777664 33444443322222 2223377777777765
Q ss_pred CCC-CCCcchHHH
Q 006997 92 PVR-LRSVVSWNS 103 (622)
Q Consensus 92 ~~~-~~~~~~~~~ 103 (622)
.+. +.++..|-.
T Consensus 167 LR~npdsp~Lw~e 179 (568)
T KOG2396|consen 167 LRFNPDSPKLWKE 179 (568)
T ss_pred hhcCCCChHHHHH
Confidence 544 333344433
No 364
>PRK12798 chemotaxis protein; Reviewed
Probab=83.50 E-value=46 Score=32.43 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=121.5
Q ss_pred cCChHHHHHHhccCCC----CChhHHHHHHHH-HHHcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHHHHHHhccCch
Q 006997 380 CGRINKAKEVFERVPD----KDLAVWSAMING-YAIHGMGDQALNLFYKMQHVEGLKPDAV----VYTSILSACSHSGMV 450 (622)
Q Consensus 380 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~ 450 (622)
.|+.+++.+.+..+.. +....+-.|+.+ .....++.+|+++|+...- ..|-.. ....-+....+.|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 5778888888877763 233455555554 3456689999999998876 556533 344455567789999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHH-HHHHHHhc---CChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006997 451 DDGLSFFKSMQSNFGIEPSIEHYLC-LVDLLGRA---GRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAK 526 (622)
Q Consensus 451 ~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 526 (622)
+++..+-.....+|.-.|=...|.. +...+.+. ...+.-..++..|.-.-....|..+...-...|+.+.|....+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9988888887777655553333332 33333333 3455566666666533336678888888889999999999999
Q ss_pred HHHccCCCCCchHHHHHHHHHh-----cCChHHHHHHHHHhhh
Q 006997 527 NLLTLNPGSTGNYILMANLFTS-----AGMWKEAATARGLMDD 564 (622)
Q Consensus 527 ~~~~~~p~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~ 564 (622)
++..+.+ ....-...+.+|.. ..+.++|.+.+..+..
T Consensus 282 ~A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 282 RALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 9999864 34444455555533 4678888888887755
No 365
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.71 E-value=27 Score=36.46 Aligned_cols=183 Identities=18% Similarity=0.276 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----------HHHHHHHHhccCChHHHHHHHHHHHHcCCCCch
Q 006997 298 FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEAT----------LATTLSACAELGSLSKGKEIEEYIVLNGLESNR 367 (622)
Q Consensus 298 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 367 (622)
.+-..++-.|....+++..+++.+.+... ||..- |.-.+.---+.|+-++|..+.-.+++..-+..+
T Consensus 202 d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 202 DTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 34455666677777777777777776652 32211 222222223456677777766665554323222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHH---HHHHHHHH
Q 006997 368 QVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVV---YTSILSAC 444 (622)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~ll~~~ 444 (622)
. +||-+|++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..++.+-
T Consensus 279 D-------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 D-------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred c-------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHh
Confidence 2 23333432 22211 11234445566788888888877 7776543 44444432
Q ss_pred hccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 006997 445 SHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYA 524 (622)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 524 (622)
.+ .++...++ +.+ | -.|-..+++.|..++-..+++-. .++.+..-.+|+.+|.+.
T Consensus 334 G~--~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 21 11111111 000 1 11334456666666655555432 123344455677777777
Q ss_pred HHHHHccCC
Q 006997 525 AKNLLTLNP 533 (622)
Q Consensus 525 ~~~~~~~~p 533 (622)
.+++.++.|
T Consensus 389 ae~mfKLk~ 397 (1226)
T KOG4279|consen 389 AEMMFKLKP 397 (1226)
T ss_pred HHHHhccCC
Confidence 777777766
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.01 E-value=52 Score=32.87 Aligned_cols=70 Identities=14% Similarity=0.029 Sum_probs=33.9
Q ss_pred HHHHHHhCCCCCCccc--HHHHHHHhhccCChhhHHHHHHHHHHhcCCCCch--hHHHHHHHhhcCCChhHHHHHhcc
Q 006997 17 TYSSMLQTGVHGNSFT--FPLVLKACANINSIWDGKRVHSHVLKVGFQQDAF--VQTGLIDMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 17 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~ 90 (622)
+++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. ....-+...++.|+.+.+..+++.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHc
Confidence 3444555666655432 234444555556654 334444455444321 112234445566666666666654
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.94 E-value=2.9 Score=22.12 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=10.0
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 006997 475 CLVDLLGRAGRFDLALKTIH 494 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~ 494 (622)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.90 E-value=15 Score=31.67 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHHhcCChHHH
Q 006997 415 DQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGI--EPSIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 415 ~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 489 (622)
+.|.+.|-.+.. .+.--++.....+...|. ..+.++++.++.++.+..+- .+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554 333333333333333333 34556666666555543211 34455556666666666555554
No 369
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.34 E-value=9.1 Score=35.57 Aligned_cols=94 Identities=17% Similarity=0.060 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP----VEVQ--AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMA 543 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (622)
..+|.-=.+-|.+..++..|...|.+-. ..|+ ...|+.=..+-...|++-.|+.-..+++.++|.+...|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3445555667888889999999998764 2333 445666666666789999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHhh
Q 006997 544 NLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~ 563 (622)
.++....++++|...-+...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 99999999888877766543
No 370
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.30 E-value=6.9 Score=39.24 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHhcc--CchHHHHHHHHHhHHhcCCCCChhHHHH--HHHHHHh-cCChHHHHHHHHhCC-CCCc--H
Q 006997 431 KPDAVVYTSILSACSHS--GMVDDGLSFFKSMQSNFGIEPSIEHYLC--LVDLLGR-AGRFDLALKTIHEMP-VEVQ--A 502 (622)
Q Consensus 431 ~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~-~g~~~~A~~~~~~~~-~~~~--~ 502 (622)
-|+..+...++.-.... ..-+-+-.++..|. .|+...|.. +...|-+ .|+.-.|.+.+..+. ..|. .
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 35555555544433322 12233444444443 344333332 2333433 688999999988775 3443 3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.....|.....+.|..-.|-.++.+.+.++...|-++..+|++|....+.+.|++.|+...+...
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 45667888888888888999999999999888899999999999999999999999998877543
No 371
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.13 E-value=42 Score=30.28 Aligned_cols=59 Identities=15% Similarity=-0.043 Sum_probs=38.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 006997 304 IGGYAQLGYPSEAVNLFKRLLKTSV--RPNEATLATTLSACAELGSLSKGKEIEEYIVLNG 362 (622)
Q Consensus 304 ~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 362 (622)
+..-.+.|++++|...|+.+....+ +-...+...++.++-+.++++.|....++..+.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 4445577888888888888776431 1234455666667777778888877777766653
No 372
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.42 E-value=22 Score=26.56 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 006997 272 LVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLA 336 (622)
Q Consensus 272 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 336 (622)
-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...| .|....|.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34456778888888888888888888888777543 5666676777777776665 44444443
No 373
>PRK10941 hypothetical protein; Provisional
Probab=80.07 E-value=12 Score=34.46 Aligned_cols=68 Identities=9% Similarity=-0.009 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 474 LCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
+.+-.+|.+.++++.|+++.+.+. ..| ++.-+.--+-.|.+.|-+..|..-++.-++..|+++.+-..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 446667788888888888888876 344 45567767777888888888888888888888877765443
No 374
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.16 E-value=1.2e+02 Score=33.99 Aligned_cols=256 Identities=10% Similarity=-0.055 Sum_probs=128.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 006997 286 RRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLES 365 (622)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (622)
..+...+..+++......+..+.+.+.. .+...+..+... ++...=...+.++...+........+..+.+ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 3444555566666666666666666543 344444444432 2332222333333332211111122222222 24
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACS 445 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 445 (622)
++.+-...+..+...+.- ....+...+..+|...-...+.++...+..+. +.... ..++...-.....++.
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l----~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA----TDENREVRIAVAKGLA 767 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh----cCCCHHHHHHHHHHHH
Confidence 555555555555543321 12234445556666655556666655544322 11222 3455555566666666
Q ss_pred ccCchHH-HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 006997 446 HSGMVDD-GLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYA 524 (622)
Q Consensus 446 ~~g~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 524 (622)
..+..+. +...+..+.. .++...-...+.++...|..+.+...+..+...++...-...+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 6555432 3344444442 456666677777777777765554445444445666555566666666654 345555
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 525 AKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+..+++ +| +..+....+.++.+.+...++...+..+.+
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 554443 33 556666667777665434456666655543
No 375
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.11 E-value=23 Score=31.42 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=42.2
Q ss_pred hcCChHHHHHHhccCC--CCCh-hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHH-HHHHHHHHhccCchHHHH
Q 006997 379 KCGRINKAKEVFERVP--DKDL-AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVV-YTSILSACSHSGMVDDGL 454 (622)
Q Consensus 379 ~~~~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~ 454 (622)
...++..|...|.+.. .|++ .-|..=+..+.+.++++.+..--.+..+ +.||... ...+..+......++.|+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccccHHH
Confidence 3345556666555444 2443 2344445555666666666666666555 5565432 333334455555666666
Q ss_pred HHHHHh
Q 006997 455 SFFKSM 460 (622)
Q Consensus 455 ~~~~~~ 460 (622)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 666655
No 376
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.94 E-value=18 Score=32.90 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
..+-.++.+.++++.|....++.+.++|+++.-+..-|.+|.+.|...-|++-++...+..+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 34555778889999999999999999999999999999999999999999999998666433
No 377
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.09 E-value=84 Score=31.46 Aligned_cols=98 Identities=7% Similarity=-0.063 Sum_probs=65.8
Q ss_pred CCChhHH-HHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 467 EPSIEHY-LCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACM--KHHNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 467 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
.|+..++ +.+.+-+.+.|-..+|...+.+.. -+|+...+..++..-. ...+..-+..+|+.++.-...++..|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 4444443 456777777888888888887765 3455666666655432 2345777788888887654467778887
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 006997 542 MANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
....-...|+.+.+-.++.++.+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHH
Confidence 77777778888887777776554
No 378
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.53 E-value=9.6 Score=22.25 Aligned_cols=30 Identities=10% Similarity=-0.134 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHccCCC
Q 006997 505 WAPLLSACMKHHNVELGEYA--AKNLLTLNPG 534 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~--~~~~~~~~p~ 534 (622)
|..+...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44455555566666666666 3355555543
No 379
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.07 E-value=9.4 Score=28.44 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=38.5
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCC---------CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGS---------TGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..+.||+..|.+.+.+.+...... ......++.+....|++++|.+.++..++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788888887777776532211 23455678888999999999999998876
No 380
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.98 E-value=28 Score=27.78 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHhccC---chHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 431 KPDAVVYTSILSACSHSG---MVDDGLSFFKSMQSNFGIEP--SIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 431 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
.++..+--.+..++.+.. +..+.+.+++++.+. -.| ..+....|.-++.+.+++++++++++...
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 444445445555555443 455666677766641 123 23444455666777777777777776654
No 381
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=74.05 E-value=74 Score=29.40 Aligned_cols=114 Identities=14% Similarity=0.111 Sum_probs=68.7
Q ss_pred hHHHHHHhccCCC-----CChhHHHHHHHHHHH-cC-CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHH
Q 006997 383 INKAKEVFERVPD-----KDLAVWSAMINGYAI-HG-MGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 383 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
+.+|..+|+.... .|..+...++..... .+ ....-.++.+-+....+-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666663221 244444455555444 11 2222233333344334566777777888888888888888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 456 FFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 456 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
+++......+..-|...|..+++.....|+..-..+++++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 88776643233446777888888888888877777777653
No 382
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.44 E-value=14 Score=30.05 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006997 487 DLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKE 554 (622)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (622)
+.|.++.+-|. ...............|++..|.++.+.++..+|+|..+....+++|.+.|.-.+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 55666666664 233344455566788999999999999999999999999999999888765443
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.40 E-value=13 Score=28.96 Aligned_cols=47 Identities=9% Similarity=0.249 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC
Q 006997 48 DGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR 94 (622)
Q Consensus 48 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 94 (622)
+..+.++.+....+.|++.+-.+-++++-+.+|+..|.++|+.++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555555555555666666666666666666666666666655543
No 384
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.40 E-value=1e+02 Score=30.30 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
...++.-|...|+..+|.+..+++-. .+.....++.+++.+..+.|+-...++++++.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44577778888888888888776631 11224556677777777777766666666554
No 385
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.28 E-value=5.8 Score=34.64 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 006997 480 LGRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS 535 (622)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 535 (622)
..+.++.+.|.+++.++. . +.....|-.+.....+.|+++.|.+.|++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345566666666666665 2 2335567777777777788888888888887777764
No 386
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=71.99 E-value=1.4e+02 Score=31.73 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHHccC---CCCCc-hH-----HHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 515 HHNVELGEYAAKNLLTLN---PGSTG-NY-----ILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 515 ~~~~~~a~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.|+..+.......+..+. |+... .| ..+.+.|...|+.++|.....+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777666666555432 32222 23 2445567778999999988887643
No 387
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.70 E-value=79 Score=28.67 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=85.6
Q ss_pred cCChHHHHHHHhhcCC----C---CcchHHHHHHHHHcCCChhHHHHHHHHHHHC---CC--CCCHhHHHHHHHHHhccC
Q 006997 178 FGKVNEARSIFDEIGE----T---SIVSWTTIIGGYVNVGNVNEAFGLCNQMRRM---SV--TPDLVVFLNLILGCAQVG 245 (622)
Q Consensus 178 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~ 245 (622)
..++++|+.-|+.+.+ . ...+.-.+|..+.+.+++++..+.+.+|.-- .+ .-+..+.++++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3577888888877654 1 2234556788889999999998888887431 11 123445666776666666
Q ss_pred ChHHHHHHHHHHHHh-----CCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC--------C-------HHHHHHHHH
Q 006997 246 NLFLALSMHSLLLKS-----GYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK--------S-------VFLWTSMIG 305 (622)
Q Consensus 246 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~-------~~~~~~l~~ 305 (622)
+.+.-..+++.-++. +-..--.+-..|...|...+.+.+..++++++... | ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 655555554433221 11111223345666677777777766666665211 0 134555556
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 006997 306 GYAQLGYPSEAVNLFKRLLK 325 (622)
Q Consensus 306 ~~~~~~~~~~a~~~~~~m~~ 325 (622)
.|..+.+-.+...+|++...
T Consensus 200 mYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhhcccHHHHHHHHHHHH
Confidence 66666666666666665443
No 388
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.47 E-value=79 Score=31.09 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=30.2
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCCCHH--HHHHHHHHHh--ccCchHHHHHHHHHhHH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKPDAV--VYTSILSACS--HSGMVDDGLSFFKSMQS 462 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 462 (622)
+...+++..|.++|+.+.. . ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~-r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLR-R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHH-h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3356677777777777776 3 444433 3344444443 34556677777766553
No 389
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.16 E-value=43 Score=25.43 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=55.7
Q ss_pred ccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 006997 42 NINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVL 121 (622)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 121 (622)
.....++|..|.+.+...+ .....+.-..+..+.+.|++++|...=.... .||...|-+|-. .+.|-.+++...+
T Consensus 18 G~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~--~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALLLPQCHC--YPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS----GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHhcccCC--CccHHHHHHHHH--HhhccHHHHHHHH
Confidence 3456889999999988876 3344455556678889999999954444444 788888877765 5778888888888
Q ss_pred HHHHHcC
Q 006997 122 KEMWVLG 128 (622)
Q Consensus 122 ~~m~~~~ 128 (622)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8776554
No 390
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.87 E-value=1e+02 Score=29.54 Aligned_cols=79 Identities=14% Similarity=-0.002 Sum_probs=59.6
Q ss_pred HHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh---cCChHHHHHHHHH
Q 006997 487 DLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS---AGMWKEAATARGL 561 (622)
Q Consensus 487 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 561 (622)
+.-+.+++++. .+.+...+..++..+.+..+.+...+-+++++..+|+++..|..+++.... .-.+++...+|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 44455555544 344466777888888888899999999999999999999999888876655 3467788888887
Q ss_pred hhhC
Q 006997 562 MDDR 565 (622)
Q Consensus 562 ~~~~ 565 (622)
..+.
T Consensus 128 ~l~~ 131 (321)
T PF08424_consen 128 CLRA 131 (321)
T ss_pred HHHH
Confidence 7653
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.76 E-value=9.8 Score=26.90 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=32.0
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHH---HHHHHHHhcCChHHHHHHH
Q 006997 514 KHHNVELGEYAAKNLLTLNPGSTGNYI---LMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 559 (622)
...+.++|+..++++++..++.+.-+. .+..+|...|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888887666555444 4455677778888777643
No 392
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.63 E-value=12 Score=23.10 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=14.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKT 326 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~ 326 (622)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.60 E-value=79 Score=27.82 Aligned_cols=123 Identities=16% Similarity=0.133 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLC 475 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 475 (622)
.+.-++.+.+.++..+++...+.-.+ -+| |.-+-..++..++-.|++++|..-++-.. .+.|+ ...|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~ 77 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRH 77 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHH
Confidence 34456677788888999988887766 445 45566778888899999999988887665 23453 455666
Q ss_pred HHHHHHhcCChHHHHHHHHh--CC---CCCcHHhHHH-HHHHHH-hc-CCHHHHHHHHHHHHccCCCCC
Q 006997 476 LVDLLGRAGRFDLALKTIHE--MP---VEVQAQVWAP-LLSACM-KH-HNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~--~~---~~~~~~~~~~-l~~~~~-~~-~~~~~a~~~~~~~~~~~p~~~ 536 (622)
++.+-... .++|.. .+ ..|. ..|.. |..+.. +. |.-+.+..+-+++++..|..+
T Consensus 78 lir~ea~R------~evfag~~~Pgflg~p~-p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 78 LIRCEAAR------NEVFAGGAVPGFLGGPS-PEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHHHHHH------HHHhccCCCCCCcCCCC-HHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 66542211 123322 22 1233 33443 333333 22 344556666677777766533
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.05 E-value=1.2e+02 Score=29.59 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=45.8
Q ss_pred hHhHHHHHHHhcCChHHHHHHHhhcCC------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 006997 167 LANSVMSMYAKFGKVNEARSIFDEIGE------TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRM 225 (622)
Q Consensus 167 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 225 (622)
...-+...|..+|+++.|.+.+.+... ..+..|-.+|..-.-.|+|.....+..+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456678889999999999999998654 23456777888888888888888777776553
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.03 E-value=44 Score=24.65 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=41.8
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHHHhcCChH-HHHHHHHHh
Q 006997 499 EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG--STGNYILMANLFTSAGMWK-EAATARGLM 562 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 562 (622)
+.|......+...+...|++++|.+.+-.++..+|+ +......+..++.-.|.-+ -+.+..+++
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 345566777888888888888888888888887764 4666777788877777744 344444433
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=68.92 E-value=1.2e+02 Score=29.61 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCC-CCchHHHHHHHH-HhcCChHHHHHHHHHhhh
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPG-STGNYILMANLF-TSAGMWKEAATARGLMDD 564 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 564 (622)
.+....+.|-+.-|.+..+-++.++|. ||-.....++.| .+.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 445667889999999999999999998 787777777766 456777777777776544
No 397
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=68.74 E-value=31 Score=26.80 Aligned_cols=60 Identities=17% Similarity=0.029 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH-------ccCCCCCchH----HHHHHHHHhcCChHHHHHHHHHhh
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLL-------TLNPGSTGNY----ILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
++..|..++...|++++++...++++ +++.+....| ..-+.++...|+.++|...|+...
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 44445555666666665555555544 3454443333 355667788899999999888653
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=68.62 E-value=35 Score=27.13 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006997 520 LGEYAAKNLLT--LNPGSTGNYILMANLFTSAGMWKEAATARGL 561 (622)
Q Consensus 520 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (622)
.+.++|+.+.. +.-+.+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888776 4555677888889999999999999998874
No 399
>PF15469 Sec5: Exocyst complex component Sec5
Probab=68.54 E-value=76 Score=27.24 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh
Q 006997 404 MINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGR 482 (622)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 482 (622)
++..-.+......++.++++..- ....-.-+.-|.+.|+++.+...|.++...++-.. ....+..+.
T Consensus 63 ll~~~~k~~~l~~~l~~l~r~~f-------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~----- 130 (182)
T PF15469_consen 63 LLERREKADKLRNALEFLQRNRF-------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVW----- 130 (182)
T ss_pred HHccHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----
Confidence 33333344445555555555443 12223455667778888888888887775432222 222332221
Q ss_pred cCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 006997 483 AGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILM 542 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (622)
.++..+.+.+. ...|..|... ....++...+...+++++|.+-.+|..+
T Consensus 131 ----~eve~ii~~~r----~~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 131 ----SEVEKIIEEFR----EKLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred ----HHHHHHHHHHH----HHHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 22222222221 1112222211 1466777888888888887655555433
No 400
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.40 E-value=75 Score=29.13 Aligned_cols=87 Identities=9% Similarity=0.099 Sum_probs=48.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----
Q 006997 304 IGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK---- 379 (622)
Q Consensus 304 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 379 (622)
|.+++..++|.+++...-+--+.--+......-.-|-.|.+.+.+..+.++-..-.+..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777776655443332211222333344445567777777777666555544223333446666665543
Q ss_pred -cCChHHHHHHh
Q 006997 380 -CGRINKAKEVF 390 (622)
Q Consensus 380 -~~~~~~A~~~~ 390 (622)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777777766
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.34 E-value=16 Score=25.89 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=7.6
Q ss_pred cCchHHHHHHHHHhHH
Q 006997 447 SGMVDDGLSFFKSMQS 462 (622)
Q Consensus 447 ~g~~~~a~~~~~~~~~ 462 (622)
..+.++|+..|....+
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3444455555554443
No 402
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=67.26 E-value=12 Score=34.40 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHH-HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAP-LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
|+..|...+.-..+.|.+.+.-.++.+.. .+.+...|-. -..-+...++++.+..++.+.+.++|++|..|.....+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 44455444444444455555555555543 2334555532 22234567899999999999999999999888765443
No 403
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.26 E-value=53 Score=24.97 Aligned_cols=79 Identities=18% Similarity=0.151 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006997 246 NLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLK 325 (622)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 325 (622)
..++|..|.+.+...+. ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34555555555555442 223333334445667777777754444455667777666543 356666677666666655
Q ss_pred CC
Q 006997 326 TS 327 (622)
Q Consensus 326 ~~ 327 (622)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 404
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.25 E-value=1.1e+02 Score=28.28 Aligned_cols=59 Identities=12% Similarity=0.234 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhH
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
+++.....|...|.+.+|.++-++... +.| +...+..++..+...|+--.+.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~lt---ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALT---LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455677788888888888888776 555 45667777788888888666666666554
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.24 E-value=78 Score=29.04 Aligned_cols=90 Identities=17% Similarity=0.118 Sum_probs=57.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh-cCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-
Q 006997 405 INGYAIHGMGDQALNLFYKMQHV-EGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR- 482 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 482 (622)
|.+++..+++.+++...-+--+. +.++| ......|-.|.+.+.+..+.++-....+. .-.-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 56777888888877655443320 11333 34555566788888888888888877754 112234447777666544
Q ss_pred ----cCChHHHHHHHHhCC
Q 006997 483 ----AGRFDLALKTIHEMP 497 (622)
Q Consensus 483 ----~g~~~~A~~~~~~~~ 497 (622)
.|.+++|+++...-.
T Consensus 167 VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHhccccHHHHHHHHhcCC
Confidence 689999999885443
No 406
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.06 E-value=42 Score=31.28 Aligned_cols=114 Identities=12% Similarity=0.017 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH---HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC--hhHHHHHHH
Q 006997 404 MINGYAIHGMGDQALNLFYKMQHVEGLKPDA---VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS--IEHYLCLVD 478 (622)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~ 478 (622)
+..+..+.|+..+|.+.|+.+.+ -.|=. .....++.+|.....+.+...++-+.-.- . .|. ..+|++
T Consensus 281 LAMCARklGrlrEA~K~~RDL~k---e~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-s-lPkSA~icYTa--- 352 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMK---EFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-S-LPKSAAICYTA--- 352 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhh---hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-CcchHHHHHHH---
Confidence 44445567888888888887765 22311 22345667776666555555555443311 1 222 222332
Q ss_pred HHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 006997 479 LLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 539 (622)
++. ++..+-++. .|+..+-..|-.+- ..|.+...++++.+|.-|...
T Consensus 353 ALL------K~RAVa~kF--spd~asrRGLS~AE------~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 353 ALL------KTRAVSEKF--SPETASRRGLSTAE------INAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHH------HHHHHHhhc--CchhhhhccccHHH------HHHHHHHHHHhhcCCCCcHHH
Confidence 111 122222222 44544333332221 246778888888888655433
No 407
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.73 E-value=2.2e+02 Score=31.45 Aligned_cols=131 Identities=13% Similarity=0.076 Sum_probs=62.5
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 006997 198 SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYT 277 (622)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (622)
-|..|+..|...|+.++|++++.+..+..-.-|.. ..+.-+.+.+-+.+.+ .++..+.-.... +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~-~~~~~Li~~y~~-wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLG-AENLDLILEYAD-WV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhc-ccchhHHHHHhh-hh
Confidence 57888888888888999988888876631001110 0111111222222222 221111111111 11
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006997 278 KCGDLELARRVFDAVLEKSVFLW-TSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACA 343 (622)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 343 (622)
-..+.+...++|..-......+. ...+-.|+.....+-++..++.+....-.++..-.+.++..|.
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 22334444444443100000000 0123345666777778888888777655556666666665554
No 408
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.65 E-value=2.4e+02 Score=31.85 Aligned_cols=248 Identities=15% Similarity=0.148 Sum_probs=116.6
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006997 263 NNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSAC 342 (622)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 342 (622)
.+++.+-...+..+.+.+..+....+...+..++...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 4555666666666666665443344444444455444444444444332211112222233322 3444433444444
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHH-HHHHH
Q 006997 343 AELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQ-ALNLF 421 (622)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 421 (622)
...+..+ ...+.. +.+ .++..+-...+.++.+.+..+. +......++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 4332111 111111 111 3444455555555555444332 2233344555555555555555554332 23333
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCc
Q 006997 422 YKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQ 501 (622)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 501 (622)
..+.+ .+|...-...+.++...|....+...+..+.. .++..+-...+.++.+.+. +++...+..+...|+
T Consensus 781 ~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~ 851 (897)
T PRK13800 781 RALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPH 851 (897)
T ss_pred HHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCC
Confidence 34332 35566666666677666665544344444432 3455555556666666654 345555555444666
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 502 AQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
...-...+.++.+.+....+...+.++++
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66655666666554333445555555554
No 409
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.64 E-value=2.1e+02 Score=31.20 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=15.5
Q ss_pred HHHHHHhccCchHHHHHHHHHhHH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQS 462 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~ 462 (622)
.++......|++++|...++++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455566667777777776666654
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.41 E-value=2.2e+02 Score=31.40 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLKT 326 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 326 (622)
-|..|+..|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4777888888888888888888887663
No 411
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.24 E-value=93 Score=31.76 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=61.0
Q ss_pred HHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhh-cCCChhHHHHHhccCCCC-----CCCcchHH-HHHHHHH
Q 006997 37 LKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYS-KCSDFVSSRKVLDEMPVR-----LRSVVSWN-SIISAHS 109 (622)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~-----~~~~~~~~-~li~~~~ 109 (622)
+..+.+.|.+..|.+....+.+.....|+.....+|+.|+ +..++.=.+++++..... -|| ..|. ++...|.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN-~~yS~AlA~f~l 427 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN-FGYSLALARFFL 427 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC-chHHHHHHHHHH
Confidence 4566788999999999999999875558888888998886 667788788877776432 333 3454 4445555
Q ss_pred hCCC---chHHHHHHHHHHH
Q 006997 110 RACL---NDEAILVLKEMWV 126 (622)
Q Consensus 110 ~~~~---~~~A~~~~~~m~~ 126 (622)
+... -..|+..+.+...
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hcCChhhHHHHHHHHHHHHH
Confidence 5544 3455555555543
No 412
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.03 E-value=76 Score=25.92 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=50.5
Q ss_pred HhHHHHHHHhcCChHHHHHHHhhcCC---------CCcchHHHHHHHHHcCCC-hhHHHHHHHHHHHCCCCCCHhHHHHH
Q 006997 168 ANSVMSMYAKFGKVNEARSIFDEIGE---------TSIVSWTTIIGGYVNVGN-VNEAFGLCNQMRRMSVTPDLVVFLNL 237 (622)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 237 (622)
.+.++.-....+.+....++++.+.- .+...|++++.+..+..- --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555556666666666666532 344567788887766555 34456777777777777788888888
Q ss_pred HHHHhcc
Q 006997 238 ILGCAQV 244 (622)
Q Consensus 238 l~~~~~~ 244 (622)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8777654
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.06 E-value=64 Score=24.79 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006997 299 LWTSMIGGYAQLGYPSEAVNLFKRLLK 325 (622)
Q Consensus 299 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 325 (622)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888888776
No 414
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.02 E-value=1.6e+02 Score=29.43 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=99.6
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCCHH-------HHHHHHH-HHhccCchHHHHHHHHHhHHhcCCCCChh--HHHHH
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPDAV-------VYTSILS-ACSHSGMVDDGLSFFKSMQSNFGIEPSIE--HYLCL 476 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~--~~~~l 476 (622)
+-.-.|++.+|++-...|.+...-.|.+. ....++. -|...|-++.|..-|....+. --..+.. .-..+
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNL 410 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhH
Confidence 33457899999999999987555555521 1223333 345678899999888877644 1122322 22356
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCcHHhHHH--------HHHH--HHhcCCHHHHHHHHHHHHccCC-C-----CCchHH
Q 006997 477 VDLLGRAGRFDLALKTIHEMPVEVQAQVWAP--------LLSA--CMKHHNVELGEYAAKNLLTLNP-G-----STGNYI 540 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~~~~~~p-~-----~~~~~~ 540 (622)
.-.|.+.|+-+.--++++.+. +++..++.+ ++.+ ...++++.+|.....+.++..- . .+-...
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 677899999888888888776 332222211 1122 2467899999999999887541 1 123455
Q ss_pred HHHHHHHhcCChHHHHHHHHHh
Q 006997 541 LMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
.|+.++...|+..++.+...-.
T Consensus 490 LLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHhcchHHHHhccchH
Confidence 7788888899999888766544
No 415
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.99 E-value=28 Score=30.23 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=12.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 467 EPSIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 467 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
.|++.+|..++..+...|+.++|.++.+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 416
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.93 E-value=16 Score=21.68 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.+|..||++-...+++++|.+-|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5788899999999999999988887764
No 417
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.29 E-value=54 Score=23.86 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHH
Q 006997 278 KCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (622)
..|+.+.|.+++..++ +.+..|...+.++...|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 6777777777777666665444
No 418
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.03 E-value=13 Score=36.50 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=64.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHH-HHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHh
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVEGLKPDAVVY-TSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGR 482 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 482 (622)
+..+...+.++.|..++.++.+ +.||...| ..-..++.+.+++..|+.=+..+.+. .|+ ...|.--..++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHh
Confidence 3455666778888888888887 77875543 33336777888888888777777643 453 2233333344555
Q ss_pred cCChHHHHHHHHhCC-CCCcHHhHHHHHHHH
Q 006997 483 AGRFDLALKTIHEMP-VEVQAQVWAPLLSAC 512 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 512 (622)
.+++.+|...|+... ..|+..-....+.-|
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 566777777777665 566655555555444
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=62.01 E-value=12 Score=34.35 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=28.3
Q ss_pred hcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 006997 482 RAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 482 ~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 539 (622)
+.|+.++|..+|+.+. ..|+ +..+..++.....+++.-+|-++|-+++...|.+..+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 4455555555555443 2222 33333444444444555555566666666555554433
No 420
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.00 E-value=36 Score=31.07 Aligned_cols=127 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhcCCCC-------chhHHHHHHHhhcCCChhHHHHHhccCCCC------CCCcchHH
Q 006997 36 VLKACANINSIWDGKRVHSHVLKVGFQQD-------AFVQTGLIDMYSKCSDFVSSRKVLDEMPVR------LRSVVSWN 102 (622)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 102 (622)
+.+...+.++.++|...+..++..|+..+ ..+...+...|++.|+...-.+......+. +..+....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhCCC-chHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCCh
Q 006997 103 SIISAHSRACL-NDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKV 181 (622)
Q Consensus 103 ~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 181 (622)
+|+..+-...+ ++.-+.+.....+...+...... ....-..++..+.+.|++
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fL---------------------------r~~Le~Kli~l~y~~~~Y 141 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFL---------------------------RLELECKLIYLLYKTGKY 141 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhcccH
Q ss_pred HHHHHHHh
Q 006997 182 NEARSIFD 189 (622)
Q Consensus 182 ~~A~~~~~ 189 (622)
.+|+.+..
T Consensus 142 sdalalIn 149 (421)
T COG5159 142 SDALALIN 149 (421)
T ss_pred HHHHHHHH
No 421
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.84 E-value=1.8e+02 Score=29.18 Aligned_cols=43 Identities=7% Similarity=-0.082 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006997 507 PLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA 549 (622)
Q Consensus 507 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (622)
..+-.+...|+.-.|.+.|.+++...-.+|..|..++.++...
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4455677888999999999999888888888999999887653
No 422
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.62 E-value=1.4e+02 Score=27.64 Aligned_cols=57 Identities=18% Similarity=0.278 Sum_probs=26.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCC-----CCChhHHHHHHHHHHHcCCHHHHHHHH
Q 006997 365 SNRQVQTSLIHMFSKCGRINKAKEVFERVP-----DKDLAVWSAMINGYAIHGMGDQALNLF 421 (622)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 421 (622)
++..+...++..++..+++.+-.++++... ..|...|..++......|+..-..++.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 334444444444444455544444444322 124455555555555555544443333
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.35 E-value=63 Score=23.55 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHH
Q 006997 148 GISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAF 216 (622)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 216 (622)
+.++++...+.|+-. ......+-..-...|+.+.|.++++.++ +....|..++.++-+.|.-+-|.
T Consensus 21 ~~~v~d~ll~~~ilT--~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLLT--EEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 345555666655432 2222222222235578888888888888 78888888888888877765543
No 424
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.33 E-value=67 Score=25.48 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHHHHcc--CCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 006997 521 GEYAAKNLLTL--NPGSTGNYILMANLFTSAGMWKEAATARG 560 (622)
Q Consensus 521 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (622)
..++|+.+... .-..+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777663 44566778889999999999999999987
No 425
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=58.37 E-value=51 Score=25.31 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=20.3
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006997 520 LGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
.+.+.+.+...+.|..+..+..+++-+...--++++.
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAV 98 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHH
Confidence 3556777777777766555555554444333344333
No 426
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.25 E-value=1.7e+02 Score=27.75 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh------ccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 006997 414 GDQALNLFYKMQHVEGLKPDAVVYTSILSACS------HSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 487 (622)
+++++.++.+... .+. |.++.....|.++- ..-+|.....+|+.+.. +.|++.+--+-.-+..+..-.+
T Consensus 272 I~eg~all~rA~~-~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALA-SRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHH-cCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 5677888888776 444 77777666666543 23467777788877763 4565433322333444445566
Q ss_pred HHHHHHHhCCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 006997 488 LALKTIHEMPVEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG 537 (622)
Q Consensus 488 ~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 537 (622)
.++..++.....|. ...+..=...+.+.|..++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 77777776653322 222333445567889999999999999988875443
No 427
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=58.21 E-value=13 Score=26.22 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHcCcccCC
Q 006997 594 LSVDIRKTLKELHIKLLEAGYIAEA 618 (622)
Q Consensus 594 ~~~~~~~~l~~~~~~~~~~g~~pd~ 618 (622)
...++.+.+++..++++.+|+.||-
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDi 30 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDI 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----E
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 3456778888999999999999993
No 428
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=58.08 E-value=90 Score=25.50 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCcchHHHHHHHHHhCCC-chHHHHHHHHHHHcCCCCChhhHHHHHhhhh
Q 006997 96 RSVVSWNSIISAHSRACL-NDEAILVLKEMWVLGLELSASTFVSVVSGCS 144 (622)
Q Consensus 96 ~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 144 (622)
.+..+|++++.+.+...- ---+..+|..|.+.+.+++..-|..++.+|.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l 126 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAAL 126 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456678888888766555 3456777888887777887777777776653
No 429
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.87 E-value=68 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=21.8
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRR 224 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 224 (622)
.-|..++..|...|..++|++++.++.+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577788888888888888888887766
No 430
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.74 E-value=2.7e+02 Score=29.24 Aligned_cols=143 Identities=11% Similarity=-0.042 Sum_probs=67.9
Q ss_pred hHHHHHHHhhcCCC-CcchHHHHHHH-----HHcCCChhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHhccC--
Q 006997 181 VNEARSIFDEIGET-SIVSWTTIIGG-----YVNVGNVNEAFGLCNQMRR-------MSVTPDLVVFLNLILGCAQVG-- 245 (622)
Q Consensus 181 ~~~A~~~~~~~~~~-~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 245 (622)
...|.++++..... ++..-..+... +....+.+.|+.+|+...+ .| +......+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666665542 33322222222 3455677778777777755 33 2223344444444422
Q ss_pred ---ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHh-cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHH----hcCChHHH
Q 006997 246 ---NLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTK-CGDLELARRVFDAVLEK-SVFLWTSMIGGYA----QLGYPSEA 316 (622)
Q Consensus 246 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a 316 (622)
+.+.|..++...-+.| .|+....-..+..... ..+...|.++|...... .+.+.-.+...|. -..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 4556677776666666 3333332222222222 23455666666655432 2333222222221 12345566
Q ss_pred HHHHHHHHhCC
Q 006997 317 VNLFKRLLKTS 327 (622)
Q Consensus 317 ~~~~~~m~~~~ 327 (622)
..++++..+.|
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 66666666655
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.47 E-value=86 Score=24.74 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=41.6
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006997 416 QALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLV 477 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 477 (622)
+..+-+..... ..+-|++......+++|.+.+|+..|.++|+-++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 33444455555 668889988999999999999999999999888754 233333455544
No 432
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=54.97 E-value=1e+02 Score=24.32 Aligned_cols=59 Identities=15% Similarity=-0.030 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHH-HHHHHHHhcCCHHHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWA-PLLSACMKHHNVELGEYAAKNL 528 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 528 (622)
..+..++..++.=.|..++|.++++.....+.-..+| .++..|....+-++..++-++.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4555667777777777788888777777555544443 3667777776666665555443
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=54.67 E-value=26 Score=34.26 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 535 STGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
..++++.+|-+|.-++|+.+|.+.|..+.
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777777776664
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.05 E-value=1.1e+02 Score=24.32 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 006997 452 DGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIH 494 (622)
Q Consensus 452 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (622)
.+.++|+.|.++ |+-.. +..|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544 44332 3444455555555555555555554
No 435
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.20 E-value=2e+02 Score=26.85 Aligned_cols=115 Identities=10% Similarity=-0.109 Sum_probs=66.0
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCC
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG-------RFDLALKTIHEMPVEVQAQVWAPLLSACMK----HHN 517 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 517 (622)
+..+|..+|+++... |..+.......+...|...+ +...|...+.++-..-+......+...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 666677777666644 43332222333334443321 223577777666533344444445544432 347
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC---------------ChHHHHHHHHHhhhCCC
Q 006997 518 VELGEYAAKNLLTLNPGSTGNYILMANLFTSAG---------------MWKEAATARGLMDDRRL 567 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 567 (622)
.++|...|+++.+... ......++ ++...| +...|...+......+.
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888776 56666666 666555 77777777777665443
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=52.12 E-value=1.6e+02 Score=30.09 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC
Q 006997 371 TSLIHMFSKCGRINKAKEVFERVP 394 (622)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~ 394 (622)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346667777777777777777765
No 437
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.12 E-value=70 Score=26.22 Aligned_cols=64 Identities=6% Similarity=0.010 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC
Q 006997 16 STYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD 80 (622)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (622)
++...+.++|.++.+. =..++..+...++.-.|.++++.+.+.+...+..|--.-++.+...|=
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3556677788877665 345777777787779999999999998866666665556677777663
No 438
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=51.95 E-value=38 Score=19.20 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHH
Q 006997 517 NVELGEYAAKNLLTLNPGSTGNYILMAN 544 (622)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (622)
.++.|..+|++.+...| ++..|...+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 45677777777777666 4566655543
No 439
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.78 E-value=64 Score=27.99 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=38.1
Q ss_pred HcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHh
Q 006997 410 IHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 463 (622)
...+.+......+.+.+.....|++..|..++.++...|+.++|.+...++..-
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444444444443332337899999999999999999999999999988843
No 440
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.60 E-value=2.4e+02 Score=27.56 Aligned_cols=135 Identities=10% Similarity=-0.031 Sum_probs=77.4
Q ss_pred hHHHHHHHH--HHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHH--------HHHHHhccCchHHHHHHHHHhHHhcCCCC
Q 006997 399 AVWSAMING--YAIHGMGDQALNLFYKMQHVEGLKPDAVVYTS--------ILSACSHSGMVDDGLSFFKSMQSNFGIEP 468 (622)
Q Consensus 399 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~--------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 468 (622)
..|..++-. +...+++.+|.++-+.... .-..-|..++.. +-.++-..|+...-..++......-.+..
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~-~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLA-SISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 344444433 2345788888888777665 222233333332 33345566776666666665554323343
Q ss_pred C----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCc--HHhHHH----HHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 469 S----IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQ--AQVWAP----LLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 469 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
| ....|.|++.|...+.++.|.++..+...+.. ..-|-. ++..-..++++..|.+.+-+++...|+
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 3 34456677777778888888888887762111 112222 222334567778888888888777775
No 441
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.16 E-value=54 Score=20.66 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=28.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHh
Q 006997 106 SAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVS 141 (622)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 141 (622)
....+.|-..++..++++|.+.|+..+...+..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 334577888899999999999998888777766654
No 442
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.77 E-value=46 Score=24.69 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 531 (622)
..+.......|+.++|...+++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455566678888888888877764
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.57 E-value=36 Score=22.93 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=11.7
Q ss_pred HHHHHHHhccCchHHHHHHHHHhH
Q 006997 438 TSILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 438 ~~ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
..++.++...|++++|.++.+++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455555555555555555444
No 444
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.57 E-value=2.8e+02 Score=27.71 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=55.3
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhc---CCCCHHHHHHHH
Q 006997 228 TPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAV---LEKSVFLWTSMI 304 (622)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~ 304 (622)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554433 6788888777777654321111 12222222211 112222344445
Q ss_pred HHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 006997 305 GGYAQ---LGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELG 346 (622)
Q Consensus 305 ~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 346 (622)
.++.+ .++++.|+..+..|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55544 5789999999999999987777655555555544443
No 445
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.49 E-value=1.7e+02 Score=25.19 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=0.0
Q ss_pred HCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHh--------CCCCCchhHHHHHHHHHhcCCHHHHHHHHhhc---
Q 006997 224 RMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKS--------GYNNEDPLDNLLVSMYTKCGDLELARRVFDAV--- 292 (622)
Q Consensus 224 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--- 292 (622)
+.|..+|...++.++..+.+..-...-...+-.+..+ +...+......-+..|.+.|||.+.-.+|-.+
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred ----------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 006997 293 ----------------------LEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSK 350 (622)
Q Consensus 293 ----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 350 (622)
.++..+.|.....+-++.-+.+++-+.+---+.- +++..|.+..++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGi----------S~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGI----------SLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHH----------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHcCCC--------------CchhHHHHHHHHHHhcCChHHHHHHhcc
Q 006997 351 GKEIEEYIVLNGLE--------------SNRQVQTSLIHMFSKCGRINKAKEVFER 392 (622)
Q Consensus 351 a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 392 (622)
+.++++.+.+..+. +.-.+.|.-...+.+.|.++.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 446
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.88 E-value=2.7e+02 Score=27.28 Aligned_cols=19 Identities=5% Similarity=-0.456 Sum_probs=10.5
Q ss_pred HHHcCCHHHHHHHHHHhHH
Q 006997 408 YAIHGMGDQALNLFYKMQH 426 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~ 426 (622)
+.+.+++..|.++|+++..
T Consensus 140 l~n~~dy~aA~~~~~~L~~ 158 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLR 158 (380)
T ss_pred HHHhcChHHHHHHHHHHHh
Confidence 3445555555555555555
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.51 E-value=62 Score=29.53 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=11.3
Q ss_pred HHHHHhccCchHHHHHHHHHhH
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
+...|.+.|++++|.++|+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555543
No 448
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.15 E-value=2.3e+02 Score=26.16 Aligned_cols=158 Identities=20% Similarity=0.130 Sum_probs=70.5
Q ss_pred hcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHH----HHHCCCCCCHhHHHHHHHHHhccCChH-HHH
Q 006997 177 KFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQ----MRRMSVTPDLVVFLNLILGCAQVGNLF-LAL 251 (622)
Q Consensus 177 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 251 (622)
+.+++++|.+++..- ...+.+.|+...|-++..- +.+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666666665432 2345555665555444333 233455666655555555444432211 122
Q ss_pred HHHHHHH---HhC--CCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006997 252 SMHSLLL---KSG--YNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT 326 (622)
Q Consensus 252 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 326 (622)
++.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------
Confidence 2222222 222 2235667777888888888888888776544333333332233333333333222
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 006997 327 SVRPNEATLATTLSACAELGSLSKGKEIEEYIVL 360 (622)
Q Consensus 327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 360 (622)
+...-.. +-.|...++...|...++...+
T Consensus 141 ----dlfi~Ra-VL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 ----DLFIARA-VLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ----HHHHHHH-HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ----hHHHHHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 1111122 2234455677777766655543
No 449
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=47.93 E-value=44 Score=30.96 Aligned_cols=68 Identities=10% Similarity=-0.029 Sum_probs=57.5
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH-HHHHHHhcCChHHHHHHHHHhhhC
Q 006997 498 VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYIL-MANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 498 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
...|+..|...+....+.|.+.+...++.+++...|.|.+.|.. -..-|...++++.++.+|.+-.+-
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 45678889888887788889999999999999999999998886 555678899999999999865543
No 450
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.30 E-value=24 Score=37.57 Aligned_cols=96 Identities=20% Similarity=0.369 Sum_probs=61.6
Q ss_pred HcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006997 410 IHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 489 (622)
-++++++.+.+.+...- -| ..+|..+.+.|-++-|+.+.+.=..++ .....+|+++.|
T Consensus 605 i~k~ydeVl~lI~ns~L-vG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~a 662 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNL-VG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVA 662 (1202)
T ss_pred HhhhhHHHHHHHHhcCc-cc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHH
Confidence 34566666665554332 11 123444556666666666654433222 234567888888
Q ss_pred HHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 490 LKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
++.-.+.. +...|..|+.....+|+.+-|+..|++.-.
T Consensus 663 le~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 663 LEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred HHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 88887765 677788888888888888888888886643
No 451
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=46.81 E-value=2.9e+02 Score=26.97 Aligned_cols=206 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHhhccCChhhHHHHHHHHHHh-----cCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhC
Q 006997 37 LKACANINSIWDGKRVHSHVLKV-----GFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRA 111 (622)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 111 (622)
+..++ .++...|.+-+-...+. +...+..+...+++.|...++|+.--+....+. -+.
T Consensus 20 ~~~la-~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Ls----------------kkr 82 (439)
T KOG1498|consen 20 ANNLA-QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLS----------------KKR 82 (439)
T ss_pred hhhhh-hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH----------------HHh
Q ss_pred CCchHHHH--HHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHh
Q 006997 112 CLNDEAIL--VLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFD 189 (622)
Q Consensus 112 ~~~~~A~~--~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 189 (622)
|+...|.. +.+-|.-..-.||..|-..++..+..-..-+++-++. -...-..|...+-.+|++++|..++.
T Consensus 83 gqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~ 155 (439)
T KOG1498|consen 83 GQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILC 155 (439)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHH
Q ss_pred hcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCch--
Q 006997 190 EIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDP-- 267 (622)
Q Consensus 190 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 267 (622)
+.+ +..|.....-+...-++++|+ .|...+|+-.|.-+-+.+...-+..+..
T Consensus 156 el~----------VETygsm~~~ekV~fiLEQmr----------------KOG~~~D~vra~i~skKI~~K~F~~~~~~~ 209 (439)
T KOG1498|consen 156 ELQ----------VETYGSMEKSEKVAFILEQMR----------------LCLLRLDYVRAQIISKKINKKFFEKPDVQE 209 (439)
T ss_pred hcc----------hhhhhhhHHHHHHHHHHHHHH----------------HHHHhhhHHHHHHHHHHhhHHhcCCccHHH
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHhhc
Q 006997 268 ----LDNLLVSMYTKCGDLELARRVFDAV 292 (622)
Q Consensus 268 ----~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (622)
.|+.++......+.+=.+.+.|+.+
T Consensus 210 lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 210 LKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHHHHhcccccchhhHHHHHHHH
No 452
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.55 E-value=2.2e+02 Score=29.74 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=56.4
Q ss_pred HhcCChHHHHHHHHhCC--CCCc------HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006997 481 GRAGRFDLALKTIHEMP--VEVQ------AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMW 552 (622)
Q Consensus 481 ~~~g~~~~A~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (622)
.+..++..+.++|+.-. ...| ....+.+--+|....+.+.|.++++++-+.+|.++-.......+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 34556666666665432 1111 223444555666777888888888888888887777777777777788888
Q ss_pred HHHHHHHHHhhhC
Q 006997 553 KEAATARGLMDDR 565 (622)
Q Consensus 553 ~~A~~~~~~~~~~ 565 (622)
++|+.+...+...
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877776653
No 453
>PF14044 NETI: NETI protein
Probab=46.51 E-value=15 Score=23.77 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCcccCC
Q 006997 602 LKELHIKLLEAGYIAEA 618 (622)
Q Consensus 602 l~~~~~~~~~~g~~pd~ 618 (622)
+.+.+..|++.||.|--
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 35678999999999954
No 454
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.83 E-value=2.3e+02 Score=25.60 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 473 YLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
+..+..++...|++-++++...++. .+.+...|-.-..+....=+.++|..-+.++++++|.-.++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 3445556666677777777766665 2333545544455555556788999999999999995444433
No 455
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.07 E-value=39 Score=22.75 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
|....-.++.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43444456777777777777777776653
No 456
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.15 E-value=4.7e+02 Score=28.69 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=28.7
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHH
Q 006997 171 VMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQM 222 (622)
Q Consensus 171 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 222 (622)
+=+.|...|+++.|+++-+.-+..=-..+..-...|.+.+++..|-++|.++
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3345667777777776655431100112222334566666777777777666
No 457
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.85 E-value=3.2e+02 Score=26.70 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCChHHHHHHHHH
Q 006997 304 IGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSAC-AELGSLSKGKEIEEY 357 (622)
Q Consensus 304 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~ 357 (622)
|..+.+.|.+..|+++.+-+...+..-|+.....+|..| .+.++++-..++.+.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 334555566666666665555554333444444444443 233444444444443
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.76 E-value=37 Score=23.94 Aligned_cols=16 Identities=19% Similarity=-0.020 Sum_probs=10.6
Q ss_pred cCChHHHHHHHHHhhh
Q 006997 549 AGMWKEAATARGLMDD 564 (622)
Q Consensus 549 ~g~~~~A~~~~~~~~~ 564 (622)
.|++++|.++|...++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5667777776666655
No 459
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.60 E-value=2.3e+02 Score=26.50 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCC
Q 006997 51 RVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMP 92 (622)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (622)
++++.+.+.++.|.-..+.-+--.+...=.+.+.+.+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555555555554444444455555555555555554
No 460
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.45 E-value=3.3e+02 Score=26.73 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=76.7
Q ss_pred hhHHHHHHHH--HHhcCChHHHHHHhccCCCC----ChhHHHH--------HHHHHHHcCCHHHHHHHHHHhHHhcCCCC
Q 006997 367 RQVQTSLIHM--FSKCGRINKAKEVFERVPDK----DLAVWSA--------MINGYAIHGMGDQALNLFYKMQHVEGLKP 432 (622)
Q Consensus 367 ~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~----~~~~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 432 (622)
...|-.++-. +..++++.+|.++-+....+ |..++.. +-.+|-..|+.......+........+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 4444444333 23457788888777655432 3333332 23345566776666666665554334554
Q ss_pred CH----HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHH-------HHHHHHhcCChHHHHHHHHhCC-CCC
Q 006997 433 DA----VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLC-------LVDLLGRAGRFDLALKTIHEMP-VEV 500 (622)
Q Consensus 433 ~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~-~~~ 500 (622)
|. ...+.+++.|...+.++.|..+..+.. .|+..+-+- +....+-++++..|.+.|-.+. ..|
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 43 346788888999999999998876554 454333222 2333445678888888876665 455
Q ss_pred c
Q 006997 501 Q 501 (622)
Q Consensus 501 ~ 501 (622)
+
T Consensus 279 q 279 (493)
T KOG2581|consen 279 Q 279 (493)
T ss_pred c
Confidence 4
No 461
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.25 E-value=45 Score=30.96 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=24.9
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHH
Q 006997 198 SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVF 234 (622)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 234 (622)
-||..|....+.||+++|+.++++....|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3667777777777777777777777777655444443
No 462
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.18 E-value=84 Score=19.79 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=15.2
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006997 208 NVGNVNEAFGLCNQMRRMSVTPDLVVFLNLI 238 (622)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 238 (622)
+.|-.+++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555544444444433
No 463
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.18 E-value=33 Score=27.32 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.6
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 006997 207 VNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGC 241 (622)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 241 (622)
-+.|.-..|..+|.+|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999988875 55555543
No 464
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.08 E-value=2.5e+02 Score=25.21 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=30.0
Q ss_pred HHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACM 513 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 513 (622)
++.++...|+.+.|..+++... ..-.+......++.. ..++.+.||..+.+....+-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 4444444555555555554432 111122222222222 444566666665555542212334444444444
No 465
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.77 E-value=27 Score=32.86 Aligned_cols=114 Identities=14% Similarity=0.050 Sum_probs=63.6
Q ss_pred ccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHH-hHHHHHHHHHhcCCHHHHHH
Q 006997 446 HSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQ-VWAPLLSACMKHHNVELGEY 523 (622)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~ 523 (622)
..|.++.|++.|...+.. -++....|..-..++.+.+++..|++-+.... +.||.. .|.--..+.+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 456677777777766632 12334445555566677777777777666654 444432 33333445556677777777
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 524 AAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
.+..+.+++- +..+-..+-.+.-..+..++-...+++.
T Consensus 204 dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 7777777655 2233333344444444444444444433
No 466
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.28 E-value=44 Score=31.00 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=34.1
Q ss_pred CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHH
Q 006997 96 RSVVS-WNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFV 137 (622)
Q Consensus 96 ~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~ 137 (622)
++..+ ||.-|....+.||+++|+.++++..+.|+.--..||.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 44444 6899999999999999999999999999775555553
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.22 E-value=94 Score=28.36 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--------CCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP--------VEVQAQVWAPLLSACMKHHNVELGEYAA 525 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 525 (622)
.+..-|.+.|++++|.++|+.+. ..+...+...+..++...|+.+....+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45667778888888888887763 1122333334444455555555544433
No 468
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.41 E-value=2.7e+02 Score=25.17 Aligned_cols=162 Identities=9% Similarity=-0.008 Sum_probs=82.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh-ccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 006997 404 MINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACS-HSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR 482 (622)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 482 (622)
++..+-+.++++++.+.++++.. .+...+..-.+.+-.+|- ..|....+++++..+..+..-..+ .....++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~-~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIE-MNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHH-TSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 55667778888888888888888 544445444444444442 234455566666665543211212 222233333321
Q ss_pred c------CChHHHHHHHHhCC----CCCcHHhH-HHHH-HHH---Hhc--C-----CHHHHHHHHHHHHc-----cCCCC
Q 006997 483 A------GRFDLALKTIHEMP----VEVQAQVW-APLL-SAC---MKH--H-----NVELGEYAAKNLLT-----LNPGS 535 (622)
Q Consensus 483 ~------g~~~~A~~~~~~~~----~~~~~~~~-~~l~-~~~---~~~--~-----~~~~a~~~~~~~~~-----~~p~~ 535 (622)
. .--.+.+.+++... ..+....+ ..+- ..| ... | -.+.|.+.|+++.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 12345666666644 12222222 2211 111 111 1 24778888888765 56666
Q ss_pred CchHH---HHHH-HHHhcCChHHHHHHHHHhhhCCC
Q 006997 536 TGNYI---LMAN-LFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 536 ~~~~~---~l~~-~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
|.-.. +.+- .|--.|+.++|.++-++..+..+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 54322 2222 34558999999998888776443
No 469
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=40.49 E-value=34 Score=26.02 Aligned_cols=26 Identities=8% Similarity=0.038 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCCCC
Q 006997 596 VDIRKTLKELHIKLLEAGYIAEADIV 621 (622)
Q Consensus 596 ~~~~~~l~~~~~~~~~~g~~pd~~~~ 621 (622)
...+..=..+..+|+..||.||+.|+
T Consensus 48 ~~L~~yH~lv~~EM~~RGY~~~~~W~ 73 (120)
T TIGR02328 48 YKLFAYHLLVMEEMATRGYHVSKQWL 73 (120)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChhhc
Confidence 34454555689999999999999774
No 470
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.04 E-value=46 Score=22.42 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=17.1
Q ss_pred hhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 006997 6 TNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKAC 40 (622)
Q Consensus 6 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 40 (622)
-..|++-+|-++++.+...-..+....+..+|...
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A 44 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLA 44 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHH
Confidence 34566666666666666532223333444444433
No 471
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=39.83 E-value=20 Score=25.61 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=28.6
Q ss_pred hcCCHHHHHHHHHHHHcc------CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 514 KHHNVELGEYAAKNLLTL------NPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..|+.+.|+..|++.+.. -|. + .......|++|.++.++|..
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~-~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPV-P--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCC-C--------cccccHHHHHHHHHHHHHHH
Confidence 457888888888887652 121 1 34555678888888888865
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.90 E-value=1.9e+02 Score=23.70 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHH
Q 006997 199 WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVF 234 (622)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 234 (622)
-..++..+.+.++.-.|.++++++.+.+...+..|.
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTV 58 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATV 58 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHH
Confidence 344555555555555566666666555444444443
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.81 E-value=2.4e+02 Score=24.15 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=14.4
Q ss_pred HHHHhccCchHHHHHHHHHhH
Q 006997 441 LSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 441 l~~~~~~g~~~~a~~~~~~~~ 461 (622)
+-.|.+.|.+++|.+++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 345677777777777777666
No 474
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.80 E-value=42 Score=26.77 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=23.3
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHh
Q 006997 109 SRACLNDEAILVLKEMWVLGLELSASTFVSVVS 141 (622)
Q Consensus 109 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 141 (622)
-..|.-..|..+|+.|++.|-.||. |+.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3456777899999999999998884 444443
No 475
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.62 E-value=2.8e+02 Score=24.74 Aligned_cols=91 Identities=19% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-----CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-----DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLC 475 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 475 (622)
.|.|+--|.-...+.+|.+.|..-.. +.| +...-..-+......|+.+.|++....+... -+.-|...+-.
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e~~---i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKESG---IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccccC---CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Q ss_pred HHHH----HHhcCChHHHHHHHHh
Q 006997 476 LVDL----LGRAGRFDLALKTIHE 495 (622)
Q Consensus 476 l~~~----~~~~g~~~~A~~~~~~ 495 (622)
|... +.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
No 476
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.77 E-value=5.9e+02 Score=28.01 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 006997 300 WTSMIGGYAQLGYPSEAVNLFKR 322 (622)
Q Consensus 300 ~~~l~~~~~~~~~~~~a~~~~~~ 322 (622)
|..++.-++..+.+++|++++..
T Consensus 533 ~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 533 YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666655543
No 477
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.51 E-value=4.5e+02 Score=26.60 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTLNPG--STGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
.+..|..+++-+|+.++|..++..+..+-|. ++.+......+=.+.|+...|+..+++-
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhc
Confidence 4556888999999999999999988887662 3333333334445689999999988854
No 478
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.87 E-value=9.5e+02 Score=30.15 Aligned_cols=356 Identities=11% Similarity=0.029 Sum_probs=185.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCC----CCc-ch-HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 006997 170 SVMSMYAKFGKVNEARSIFDEIGE----TSI-VS-WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ 243 (622)
Q Consensus 170 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (622)
.+..+-.++|.+.+|...++.-.. .+. .. |-.+...|..-+++|....+...-.. .| .+...+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 455667788889999988888421 111 22 33444488888888888777764111 12 22344555667
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHH-HHHHHhcCChHHHHHH
Q 006997 244 VGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEK---SVFLWTSM-IGGYAQLGYPSEAVNL 319 (622)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l-~~~~~~~~~~~~a~~~ 319 (622)
.|++..|...|+.+.+.+ ++....++.+++.-...|.++.+....+..... ....|+++ ..+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999988876 555667777777666777777777666655332 22333333 2334567777776665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH--------HcCCC-CchhHHHHHHHHHHhcCChHHHHHHh
Q 006997 320 FKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIV--------LNGLE-SNRQVQTSLIHMFSKCGRINKAKEVF 390 (622)
Q Consensus 320 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (622)
.. ...+-.-.......++-...+...+.. ....+.+. ..+.. .-...|..++..+.-+.- +.-.+.+
T Consensus 1541 l~--~~n~e~w~~~~~g~~ll~~~~kD~~~~-~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~~~~~l 1616 (2382)
T KOG0890|consen 1541 LS--DRNIEYWSVESIGKLLLRNKKKDEIAT-LDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-ENSIEEL 1616 (2382)
T ss_pred hh--cccccchhHHHHHHHHHhhcccchhhH-HHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 54 111100011101111111111111111 11111111 11111 112344555444433221 2222222
Q ss_pred ccCCCC-----ChhHHHHHH---HHHHHcCCHHHHHHHHHHh-HH---hcCCCCC-HHHHHHHHHHHhccCchHHHHHHH
Q 006997 391 ERVPDK-----DLAVWSAMI---NGYAIHGMGDQALNLFYKM-QH---VEGLKPD-AVVYTSILSACSHSGMVDDGLSFF 457 (622)
Q Consensus 391 ~~~~~~-----~~~~~~~l~---~~~~~~~~~~~a~~~~~~~-~~---~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 457 (622)
...... +..-|..-+ ..+.+...+ +-.+++. .. ..+.... ..+|....+.+.+.|.++.|...+
T Consensus 1617 ~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ep---ILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 KKVSYDEDSANNSDNWKNRLERTQPSFRIKEP---ILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred hccCccccccccchhHHHHHHHhchhHHHHhH---HHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222211 112232222 222222222 1112221 11 0122222 357888889999999999999887
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCc--------HHhHHHHHHH--------H-HhcCC-
Q 006997 458 KSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQ--------AQVWAPLLSA--------C-MKHHN- 517 (622)
Q Consensus 458 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~--------~~~~~~l~~~--------~-~~~~~- 517 (622)
-.+.+. + . +..+--.+..+-..|+...|+.++++.. ..|+ +..-+.++.. | ...++
T Consensus 1694 l~A~e~-r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~ 1769 (2382)
T KOG0890|consen 1694 LNAKES-R-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNF 1769 (2382)
T ss_pred Hhhhhc-c-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcch
Confidence 666643 2 3 3445556777889999999999998753 1111 2222222221 2 12344
Q ss_pred -HHHHHHHHHHHHccCCCCCchHHHHH
Q 006997 518 -VELGEYAAKNLLTLNPGSTGNYILMA 543 (622)
Q Consensus 518 -~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (622)
.+.-++.|+++.+..|.....|+.++
T Consensus 1770 ~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1770 ESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hHHHHHHHHHHHHHHcccccCceeeHH
Confidence 35567889999999997766666666
No 479
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.78 E-value=2.8e+02 Score=30.32 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHh
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSM 460 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~ 460 (622)
.+|..|.......|+.+-|+..|++.
T Consensus 673 d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 673 DVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 34444444444455555554444443
No 480
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.57 E-value=4.4e+02 Score=26.24 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 006997 371 TSLIHMFSKCGRINKAKEVFERVPDK---DLAVWSAMINGYAIHGMGDQALNLFYKMQH 426 (622)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (622)
..|+.-|.-.|++.+|...+.++.-| ..+.+.+++.+.-+.|+-...+.+++..-+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44666677777777887777776654 335666777777777766666666665554
No 481
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.56 E-value=2.3e+02 Score=29.73 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=58.5
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCC------CcchHHHHHHHHHcCCChh------HHHHHHHHHHHCCCCCCHhHHHH
Q 006997 169 NSVMSMYAKFGKVNEARSIFDEIGET------SIVSWTTIIGGYVNVGNVN------EAFGLCNQMRRMSVTPDLVVFLN 236 (622)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~ 236 (622)
.+|..+|...|++-.+.++++..... =...+|..|+...+.|.++ .+.+.+++.. +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 37889999999999999999887652 2357888999999999764 3444444443 5668888888
Q ss_pred HHHHHhccCChHHHHHHHHH
Q 006997 237 LILGCAQVGNLFLALSMHSL 256 (622)
Q Consensus 237 ll~~~~~~~~~~~a~~~~~~ 256 (622)
++++..+.-+.....-++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~ 128 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHE 128 (1117)
T ss_pred HHHhhcChHhHHhccHHHHH
Confidence 87776554333333333333
No 482
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.55 E-value=2.6e+02 Score=27.82 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHhCCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 492 TIHEMPVEVQ--AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 492 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
+|......|. ..++++-+..+.+.+|+.-|..+.++++++.|.
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 3444444444 335667777888999999999999999999984
No 483
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=35.53 E-value=99 Score=18.85 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006997 524 AAKNLLTLNPGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 524 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
.+..++-..|++...+..+++.+...|+...|.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 456677789999999999999999999987654
No 484
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.30 E-value=7.4e+02 Score=28.41 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhccCchHHHHHH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD----AVVYTSILSACSHSGMVDDGLSF 456 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 456 (622)
|...++.+-+.+-.+.+.++-..+.+ .++++ ..+++.+.+-....|.+-+|.+.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 34445555555666666665555554 22222 12344555555555555555444
No 485
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=35.03 E-value=1.9e+02 Score=29.24 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC--------CCCchHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP--------GSTGNYIL 541 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--------~~~~~~~~ 541 (622)
+..|...+.-|...++++.|+++.+-.. +...|.+|......+.+..-++..|..+.+.+. +-++--..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3345555555666666666666665543 334455555555555555555555544433221 01122233
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 006997 542 MANLFTSAGMWKEAATARG 560 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~ 560 (622)
++....-.|+..+|..++.
T Consensus 650 mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHhccchhhhHHHH
Confidence 4444445566666665554
No 486
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=34.89 E-value=90 Score=30.44 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006997 511 ACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 511 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
+|.+.++.+.|+....+.+-++|..+..+..-+-++....+|.+|.
T Consensus 237 CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAa 282 (569)
T PF15015_consen 237 CYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAA 282 (569)
T ss_pred hhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444333333344444444444443
No 487
>PRK02287 hypothetical protein; Provisional
Probab=34.86 E-value=2.8e+02 Score=23.45 Aligned_cols=60 Identities=17% Similarity=-0.007 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWA-PLLSACMKHHNVELGEYAAKNLL 529 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~ 529 (622)
..+..+++.++.=.|..++|.++++.....++-...| .++..|.+..+-++..++-++.+
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~ 167 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYL 167 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3455566666667777777777777666444433332 36666666666666555555443
No 488
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.73 E-value=4.7e+02 Score=26.01 Aligned_cols=113 Identities=9% Similarity=0.027 Sum_probs=50.0
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCC----cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhH--HHHHHHHHhccC
Q 006997 172 MSMYAKFGKVNEARSIFDEIGETS----IVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVV--FLNLILGCAQVG 245 (622)
Q Consensus 172 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~ 245 (622)
+...+..|+.+.+..+++.-...+ ...+ +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 444556677777766665433211 1111 222333444544 34444455565554321 123344445556
Q ss_pred ChHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhcC
Q 006997 246 NLFLALSMHSLLLKSGYNNEDP--LDNLLVSMYTKCGDLELARRVFDAVL 293 (622)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~ 293 (622)
+.+.+..+ .+.|..++.. ...+.+...+..|+.+-+.-+++.-.
T Consensus 147 ~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 147 DIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred CHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 65544333 3344332211 11223333445566666555555443
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.67 E-value=2e+02 Score=24.41 Aligned_cols=45 Identities=7% Similarity=-0.050 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 006997 199 WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ 243 (622)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (622)
-..++..+...++.-.|.++++.+.+.+..++..|....|..+..
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e 72 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLE 72 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHH
Confidence 334444444445555566666666655554454444333433333
No 490
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.38 E-value=4.9e+02 Score=26.06 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=24.6
Q ss_pred hHHHHHHHHHh---CCCchHHHHHHHHHHHcCCCCCh
Q 006997 100 SWNSIISAHSR---ACLNDEAILVLKEMWVLGLELSA 133 (622)
Q Consensus 100 ~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~ 133 (622)
.+..++.++.+ .++++.|+..+..|.+.|..|..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Confidence 34445555544 57899999999999998876653
No 491
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.08 E-value=4.3e+02 Score=25.29 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=71.9
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHH-Hh-----cCChHHHHHHHHhCC-CCCcHH-hHHHHHHHHHhcCCHHH
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLL-GR-----AGRFDLALKTIHEMP-VEVQAQ-VWAPLLSACMKHHNVEL 520 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~-----~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~ 520 (622)
.++++..++++.... + .|.+....+.|.++ .+ .-+|..-..+|+.+. ..|++. ++|.-. +..+..-.+.
T Consensus 271 lI~eg~all~rA~~~-~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAV-Ala~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALAS-R-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAV-ALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHc-C-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHH-HHHHhhhHHh
Confidence 467778888877654 3 47777777666554 22 235667777776654 456644 344333 2333334566
Q ss_pred HHHHHHHHHcc--CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 521 GEYAAKNLLTL--NPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 521 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+..+.+-+.+. -.+-...+..-++++.+.|+.++|...|++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~ 393 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA 393 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 66666666553 122334556779999999999999999998876
No 492
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=33.15 E-value=1.5e+02 Score=21.58 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHH
Q 006997 15 LSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVL 57 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 57 (622)
.++|+-....|+..|+..|..++..+.-.=.+....+++..|.
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
No 493
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=4.4e+02 Score=25.07 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=11.5
Q ss_pred hccCchHHHHHHHHHhHHh
Q 006997 445 SHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~ 463 (622)
....++.+|-.+|-+..+.
T Consensus 192 msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 192 MSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHhHHHHHHHHHHHccc
Confidence 3445677777776665543
No 494
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.55 E-value=4.5e+02 Score=25.14 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=23.6
Q ss_pred HhccCchHHHHHHHHHhHHhcCC--CCChhHH--HHHHHHHHhcCChHHHHHHHHh
Q 006997 444 CSHSGMVDDGLSFFKSMQSNFGI--EPSIEHY--LCLVDLLGRAGRFDLALKTIHE 495 (622)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~ 495 (622)
..+.++.++|.++++++..+... .|+...| ...+.++...|+..++.+++++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 33444566666666665543211 2233222 2333444455555555555443
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.24 E-value=1.7e+02 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=19.9
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 533 PGSTGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
|-.|..+.+|+.+|...|+.+.|.+-|+.-
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 334666677777777777777777766643
No 496
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.94 E-value=5.9e+02 Score=27.42 Aligned_cols=183 Identities=19% Similarity=0.324 Sum_probs=95.3
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----------hHHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCC
Q 006997 198 SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDL----------VVFLNLILGCAQVGNLFLALSMHSLLLKSG--YNNE 265 (622)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 265 (622)
+-..++-.|-...+++..+++.+.+... ||. ..|...++.--+.|+-++|+...-.+.+.. +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4555666777788888888888888763 432 224444554455677888877766665543 3444
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHH
Q 006997 266 DPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEAT---LATTLSAC 342 (622)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~ 342 (622)
. ||-+|++ |+.|- +-+.|...+..+.|.+.|++.-+. .|+..+ +..|+.+.
T Consensus 280 m---------~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 M---------YCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAA 333 (1226)
T ss_pred e---------eeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHh
Confidence 3 3333432 11110 112233445556677777766543 454432 33333321
Q ss_pred hccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 006997 343 AELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFY 422 (622)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 422 (622)
.. .++...+ +...| ..|-..+++.|.+++..+.++- .+ .+.+-.-.+++.+|.+.-+
T Consensus 334 G~--~Fens~E----lq~Ig--------mkLn~LlgrKG~leklq~YWdV------~~---y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 334 GE--HFENSLE----LQQIG--------MKLNSLLGRKGALEKLQEYWDV------AT---YFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred hh--hccchHH----HHHHH--------HHHHHHhhccchHHHHHHHHhH------HH---hhhhhhhccCHHHHHHHHH
Confidence 11 1111111 11111 2233445677777776666642 22 2333445677888888877
Q ss_pred HhHHhcCCCCCHH
Q 006997 423 KMQHVEGLKPDAV 435 (622)
Q Consensus 423 ~~~~~~~~~p~~~ 435 (622)
.|.+ ++|-.+
T Consensus 391 ~mfK---Lk~P~W 400 (1226)
T KOG4279|consen 391 MMFK---LKPPVW 400 (1226)
T ss_pred HHhc---cCCcee
Confidence 7776 555443
No 497
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.92 E-value=3.6e+02 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=14.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
.+.....+.|+.++|.+.|.++.
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455566666666666666655
No 498
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.85 E-value=2e+02 Score=23.64 Aligned_cols=62 Identities=6% Similarity=0.097 Sum_probs=42.3
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhcc-CChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCCh
Q 006997 19 SSMLQTGVHGNSFTFPLVLKACANI-NSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDF 81 (622)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (622)
+.+.+.|.++.+.- ..++..+... +..-.|.++++.+.+.+...+..|--..+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34566677766543 3455555554 46778999999999888666766666667777777644
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.76 E-value=3.3e+02 Score=23.38 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=16.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 538 (622)
..|.+.|.+++|.+++++..+ +|++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 355566666666666666665 5544443
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.70 E-value=5.3e+02 Score=26.62 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=34.9
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCCC--c---chHHHHHHHHHcCCChhHHHHHHHHHHH
Q 006997 169 NSVMSMYAKFGKVNEARSIFDEIGETS--I---VSWTTIIGGYVNVGNVNEAFGLCNQMRR 224 (622)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~---~~~~~li~~~~~~~~~~~a~~~~~~m~~ 224 (622)
..++.-|.+.+++++|..++..|.-.. . ...+.+...+.+..--++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 467778889999999999988886432 1 2344455555555544444445554443
Done!