Query 006997
Match_columns 622
No_of_seqs 654 out of 3662
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 14:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.8E-40 6.3E-45 348.7 38.1 475 75-565 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-40 5E-45 349.5 32.3 495 28-548 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 7.2E-28 2.5E-32 238.2 41.6 372 171-551 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-27 7.4E-32 234.8 41.3 353 202-564 5-367 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.2E-27 4.3E-32 239.6 18.4 211 13-279 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 8.9E-27 3E-31 233.4 23.0 184 197-380 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7E-25 2.4E-29 225.7 28.2 225 334-565 239-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.9E-24 1.3E-28 220.1 32.1 371 164-542 5-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.2E-23 1.4E-27 208.5 36.4 341 195-567 25-412 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.4E-23 8.2E-28 215.4 29.5 424 99-567 26-493 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.7E-22 9.3E-27 202.5 33.8 346 162-536 23-415 (450)
12 3fp2_A TPR repeat-containing p 99.9 4E-23 1.4E-27 213.8 25.6 255 280-540 216-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.5E-19 5E-24 176.4 36.1 303 231-565 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.2E-20 2.8E-24 178.2 33.5 324 195-550 2-354 (359)
15 3hym_B Cell division cycle pro 99.9 3.3E-19 1.1E-23 171.7 30.2 286 263-553 19-322 (330)
16 1xi4_A Clathrin heavy chain; a 99.9 4.1E-17 1.4E-21 173.0 45.2 467 36-562 845-1342(1630)
17 2xm6_A Protein corresponding t 99.8 1.4E-17 4.7E-22 169.5 40.4 379 164-562 38-468 (490)
18 3hym_B Cell division cycle pro 99.8 1.3E-18 4.5E-23 167.5 27.6 263 295-565 20-299 (330)
19 1fch_A Peroxisomal targeting s 99.8 3.4E-19 1.2E-23 174.6 22.1 279 279-564 38-358 (368)
20 2ooe_A Cleavage stimulation fa 99.8 5.2E-17 1.8E-21 166.9 39.1 396 162-567 10-494 (530)
21 1xi4_A Clathrin heavy chain; a 99.8 3.5E-15 1.2E-19 158.5 52.9 418 29-497 984-1443(1630)
22 2xm6_A Protein corresponding t 99.8 1.5E-16 5.1E-21 161.8 40.9 352 194-567 37-434 (490)
23 1b89_A Protein (clathrin heavy 99.8 3.9E-19 1.3E-23 169.2 18.9 347 176-562 14-369 (449)
24 3mkr_A Coatomer subunit epsilo 99.8 1.9E-17 6.6E-22 154.9 29.5 271 274-559 7-288 (291)
25 4g1t_A Interferon-induced prot 99.8 3E-17 1E-21 166.5 31.0 382 164-575 50-469 (472)
26 4eqf_A PEX5-related protein; a 99.8 1.2E-18 4E-23 170.5 19.4 260 297-563 65-354 (365)
27 1b89_A Protein (clathrin heavy 99.8 2.9E-17 9.8E-22 156.4 27.2 294 169-497 65-370 (449)
28 2ooe_A Cleavage stimulation fa 99.8 1.2E-15 4.1E-20 156.8 39.1 404 29-497 12-490 (530)
29 1fch_A Peroxisomal targeting s 99.8 5.7E-18 2E-22 165.8 19.9 276 280-566 15-315 (368)
30 3cv0_A Peroxisome targeting si 99.8 1.8E-17 6.2E-22 159.2 22.3 273 267-564 22-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 3.1E-17 1E-21 153.5 22.8 248 304-567 6-266 (291)
32 4eqf_A PEX5-related protein; a 99.8 1.8E-17 6E-22 162.1 21.7 232 331-566 64-311 (365)
33 4g1t_A Interferon-induced prot 99.8 3.9E-16 1.3E-20 158.4 28.6 390 95-543 48-471 (472)
34 2pl2_A Hypothetical conserved 99.7 1.8E-16 6.1E-21 141.7 17.8 193 364-563 2-212 (217)
35 3cv0_A Peroxisome targeting si 99.7 3.3E-15 1.1E-19 143.4 26.3 227 197-461 22-267 (327)
36 3uq3_A Heat shock protein STI1 99.7 6.2E-16 2.1E-20 142.8 20.1 226 298-565 6-236 (258)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.3E-20 140.1 19.6 235 266-545 5-256 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.1E-15 1.4E-19 138.8 21.4 241 309-559 17-269 (275)
39 3e4b_A ALGK; tetratricopeptide 99.7 1.7E-14 5.8E-19 144.2 24.6 376 104-564 9-420 (452)
40 3u4t_A TPR repeat-containing p 99.6 1.1E-14 3.6E-19 135.7 20.7 241 303-550 9-269 (272)
41 3spa_A Mtrpol, DNA-directed RN 99.6 2E-16 6.9E-21 162.7 7.1 126 164-289 126-259 (1134)
42 3e4b_A ALGK; tetratricopeptide 99.6 1E-13 3.5E-18 138.5 25.9 342 36-426 9-386 (452)
43 3spa_A Mtrpol, DNA-directed RN 99.6 1E-15 3.6E-20 157.5 10.1 126 266-391 127-260 (1134)
44 3u4t_A TPR repeat-containing p 99.6 3.5E-14 1.2E-18 132.2 19.9 227 333-566 4-251 (272)
45 1ouv_A Conserved hypothetical 99.6 2.4E-13 8.3E-18 126.5 25.3 225 296-567 5-253 (273)
46 2h6f_A Protein farnesyltransfe 99.6 8.4E-14 2.9E-18 134.6 22.6 245 297-549 97-366 (382)
47 3vtx_A MAMA; tetratricopeptide 99.6 4.7E-14 1.6E-18 122.5 18.6 166 397-567 4-172 (184)
48 2h6f_A Protein farnesyltransfe 99.6 4.4E-14 1.5E-18 136.5 19.4 225 333-565 98-348 (382)
49 2ho1_A Type 4 fimbrial biogene 99.6 8.5E-14 2.9E-18 127.9 20.2 196 367-566 37-239 (252)
50 2vq2_A PILW, putative fimbrial 99.6 1.2E-13 4.2E-18 124.2 20.0 196 366-565 7-211 (225)
51 2pl2_A Hypothetical conserved 99.6 7.6E-14 2.6E-18 124.6 17.8 205 296-528 4-211 (217)
52 2q7f_A YRRB protein; TPR, prot 99.6 3.9E-14 1.3E-18 129.3 16.3 142 399-545 92-236 (243)
53 2q7f_A YRRB protein; TPR, prot 99.6 3.1E-14 1.1E-18 130.0 15.5 196 366-566 22-223 (243)
54 1ouv_A Conserved hypothetical 99.6 8.8E-13 3E-17 122.7 25.3 226 264-534 4-254 (273)
55 4abn_A Tetratricopeptide repea 99.6 5E-14 1.7E-18 141.7 17.5 208 349-563 85-319 (474)
56 4a1s_A PINS, partner of inscut 99.6 3E-14 1E-18 141.5 15.7 262 302-564 53-371 (411)
57 3sf4_A G-protein-signaling mod 99.6 6.8E-14 2.3E-18 138.7 18.3 271 265-535 8-340 (406)
58 2ho1_A Type 4 fimbrial biogene 99.6 5.9E-13 2E-17 122.2 22.7 208 297-540 37-247 (252)
59 3ro2_A PINS homolog, G-protein 99.6 6.1E-14 2.1E-18 135.0 16.0 263 302-565 10-332 (338)
60 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.3E-13 4.5E-18 128.5 17.3 236 280-525 19-269 (275)
61 2vq2_A PILW, putative fimbrial 99.5 1.2E-12 4.1E-17 117.7 22.8 209 297-542 8-222 (225)
62 4e6h_A MRNA 3'-END-processing 99.5 2.3E-10 7.7E-15 118.1 40.7 217 315-536 327-575 (679)
63 3sf4_A G-protein-signaling mod 99.5 2.5E-13 8.6E-18 134.5 17.9 268 228-496 6-333 (406)
64 4gyw_A UDP-N-acetylglucosamine 99.5 5.7E-13 2E-17 139.2 17.8 161 398-564 9-173 (723)
65 3ulq_A Response regulator aspa 99.5 1E-12 3.4E-17 129.0 16.8 196 368-564 144-367 (383)
66 3vtx_A MAMA; tetratricopeptide 99.5 1.9E-12 6.6E-17 112.3 16.6 166 366-536 4-175 (184)
67 4a1s_A PINS, partner of inscut 99.5 4.1E-13 1.4E-17 133.3 13.4 272 233-533 50-374 (411)
68 4e6h_A MRNA 3'-END-processing 99.4 2.6E-10 8.8E-15 117.7 33.5 401 164-567 65-572 (679)
69 2ond_A Cleavage stimulation fa 99.4 7.1E-12 2.4E-16 118.6 20.2 217 314-536 33-275 (308)
70 2ond_A Cleavage stimulation fa 99.4 3.8E-11 1.3E-15 113.6 25.0 213 349-568 33-273 (308)
71 4abn_A Tetratricopeptide repea 99.4 2.2E-12 7.6E-17 129.7 16.5 179 383-567 84-289 (474)
72 3nf1_A KLC 1, kinesin light ch 99.4 3E-13 1E-17 128.6 9.4 237 297-564 27-306 (311)
73 3ro2_A PINS homolog, G-protein 99.4 3.7E-12 1.3E-16 122.4 17.2 135 400-534 185-335 (338)
74 4i17_A Hypothetical protein; T 99.4 5E-12 1.7E-16 114.0 16.9 163 399-565 8-209 (228)
75 3as5_A MAMA; tetratricopeptide 99.4 9.2E-12 3.2E-16 108.0 17.9 162 400-566 10-174 (186)
76 1hz4_A MALT regulatory protein 99.4 1.1E-10 3.9E-15 113.9 27.1 261 303-564 20-321 (373)
77 3ulq_A Response regulator aspa 99.4 2E-11 6.9E-16 119.7 21.0 231 303-533 109-370 (383)
78 4i17_A Hypothetical protein; T 99.4 1.8E-11 6.3E-16 110.2 17.9 205 330-547 5-225 (228)
79 3nf1_A KLC 1, kinesin light ch 99.4 2.1E-12 7.1E-17 122.7 11.9 240 264-534 25-310 (311)
80 3qky_A Outer membrane assembly 99.3 5.3E-11 1.8E-15 109.7 19.1 203 366-612 14-248 (261)
81 3q15_A PSP28, response regulat 99.3 3.7E-11 1.3E-15 117.5 18.7 195 369-564 143-364 (378)
82 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.4E-15 100.7 18.7 167 367-538 8-180 (186)
83 3q15_A PSP28, response regulat 99.3 1.1E-09 3.7E-14 107.1 25.8 230 302-531 106-365 (378)
84 4ga2_A E3 SUMO-protein ligase 99.2 1.2E-11 4.2E-16 102.7 7.7 140 406-551 5-149 (150)
85 1qqe_A Vesicular transport pro 99.2 1.1E-10 3.6E-15 109.5 14.4 203 347-564 32-268 (292)
86 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.1E-10 1.4E-14 100.9 17.5 181 369-570 6-218 (225)
87 4gyw_A UDP-N-acetylglucosamine 99.2 7.8E-11 2.7E-15 123.1 14.4 163 365-533 7-176 (723)
88 3mv2_B Coatomer subunit epsilo 99.2 1.4E-09 4.6E-14 99.4 20.5 243 275-540 22-291 (310)
89 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4E-15 108.7 13.7 222 343-564 12-280 (283)
90 1hz4_A MALT regulatory protein 99.2 8.6E-09 2.9E-13 100.5 26.9 157 204-360 22-202 (373)
91 1qqe_A Vesicular transport pro 99.2 2.3E-10 7.9E-15 107.1 14.5 222 281-542 32-280 (292)
92 4ga2_A E3 SUMO-protein ligase 99.2 5.5E-11 1.9E-15 98.7 8.6 122 440-564 3-128 (150)
93 2pzi_A Probable serine/threoni 99.2 1.5E-10 5E-15 121.9 13.7 167 378-551 402-583 (681)
94 3qou_A Protein YBBN; thioredox 99.2 3.6E-10 1.2E-14 105.4 14.9 173 386-564 105-283 (287)
95 3mv2_B Coatomer subunit epsilo 99.2 2.3E-09 7.8E-14 97.9 19.4 240 305-567 21-284 (310)
96 2fo7_A Synthetic consensus TPR 99.2 7.1E-10 2.4E-14 90.1 14.7 128 437-566 4-133 (136)
97 2r5s_A Uncharacterized protein 99.2 2.4E-10 8.3E-15 97.9 12.2 158 401-564 9-172 (176)
98 3gyz_A Chaperone protein IPGC; 99.2 4.3E-11 1.5E-15 98.6 6.9 102 465-566 30-134 (151)
99 2vgx_A Chaperone SYCD; alterna 99.1 1.6E-10 5.5E-15 95.5 10.0 107 456-565 9-118 (148)
100 3qky_A Outer membrane assembly 99.1 8E-10 2.7E-14 101.7 15.8 203 330-555 13-251 (261)
101 4gco_A Protein STI-1; structur 99.1 3.5E-10 1.2E-14 90.4 10.3 94 471-564 14-109 (126)
102 3edt_B KLC 2, kinesin light ch 99.1 1.5E-09 5.1E-14 101.1 15.9 132 399-531 128-281 (283)
103 3urz_A Uncharacterized protein 99.1 2.2E-09 7.7E-14 94.6 15.6 121 440-564 60-185 (208)
104 2vsy_A XCC0866; transferase, g 99.1 1.3E-09 4.3E-14 112.9 15.6 158 380-543 2-169 (568)
105 4gco_A Protein STI-1; structur 99.1 1.3E-09 4.3E-14 87.1 11.8 114 430-546 8-125 (126)
106 3rjv_A Putative SEL1 repeat pr 99.1 1E-08 3.5E-13 90.6 18.4 162 396-567 16-199 (212)
107 2xcb_A PCRH, regulatory protei 99.1 1.4E-09 4.8E-14 89.3 11.6 100 466-565 13-115 (142)
108 3urz_A Uncharacterized protein 99.0 3.6E-09 1.2E-13 93.3 14.9 178 335-534 7-189 (208)
109 2fo7_A Synthetic consensus TPR 99.0 9.1E-09 3.1E-13 83.4 15.6 130 400-534 3-135 (136)
110 2ifu_A Gamma-SNAP; membrane fu 99.0 2.3E-09 7.8E-14 101.1 13.1 219 310-557 4-253 (307)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.0 6.4E-09 2.2E-13 92.3 15.1 124 403-533 11-152 (213)
112 2ifu_A Gamma-SNAP; membrane fu 99.0 2.2E-09 7.7E-14 101.2 12.6 218 279-523 4-253 (307)
113 3u3w_A Transcriptional activat 99.0 3.3E-08 1.1E-12 92.5 20.3 161 404-564 81-265 (293)
114 2pzi_A Probable serine/threoni 99.0 2E-08 7E-13 105.6 19.5 189 343-539 402-610 (681)
115 3qou_A Protein YBBN; thioredox 99.0 1.8E-08 6.3E-13 93.7 16.5 133 432-567 114-250 (287)
116 2vsy_A XCC0866; transferase, g 98.9 1.4E-08 4.8E-13 105.0 17.0 147 412-564 3-156 (568)
117 3dra_A Protein farnesyltransfe 98.9 1.9E-07 6.4E-12 86.4 21.7 148 412-564 124-286 (306)
118 2r5s_A Uncharacterized protein 98.9 1.9E-08 6.5E-13 86.0 13.5 156 369-530 8-172 (176)
119 3upv_A Heat shock protein STI1 98.9 9.6E-09 3.3E-13 82.2 10.8 96 470-565 4-101 (126)
120 1a17_A Serine/threonine protei 98.9 2.6E-08 8.8E-13 84.2 13.7 128 435-564 14-145 (166)
121 2e2e_A Formate-dependent nitri 98.9 1.1E-08 3.9E-13 87.6 11.0 121 445-567 21-146 (177)
122 2uy1_A Cleavage stimulation fa 98.9 3.7E-06 1.3E-10 84.3 30.7 338 179-530 28-412 (493)
123 2qfc_A PLCR protein; TPR, HTH, 98.9 4.4E-08 1.5E-12 91.7 15.8 164 400-564 77-265 (293)
124 2lni_A Stress-induced-phosphop 98.9 2.2E-08 7.7E-13 80.8 12.1 115 434-551 16-133 (133)
125 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.8E-08 2E-12 86.8 15.7 186 331-538 3-220 (225)
126 1p5q_A FKBP52, FK506-binding p 98.9 1.6E-08 5.4E-13 96.5 12.7 95 470-564 196-293 (336)
127 2c2l_A CHIP, carboxy terminus 98.9 8.8E-09 3E-13 95.5 10.4 190 367-565 4-199 (281)
128 3sz7_A HSC70 cochaperone (SGT) 98.8 5.2E-08 1.8E-12 82.1 13.5 103 435-540 12-117 (164)
129 1hxi_A PEX5, peroxisome target 98.8 1.1E-08 3.7E-13 81.0 8.6 96 472-567 19-116 (121)
130 1na0_A Designed protein CTPR3; 98.8 6.5E-08 2.2E-12 77.0 13.3 115 434-550 9-125 (125)
131 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.1E-07 3.7E-12 84.2 16.0 123 438-565 10-150 (213)
132 2vyi_A SGTA protein; chaperone 98.8 4E-08 1.4E-12 79.0 12.0 117 434-552 12-130 (131)
133 2uy1_A Cleavage stimulation fa 98.8 4E-06 1.4E-10 84.0 28.8 372 7-426 6-412 (493)
134 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-08 4.7E-13 83.8 8.8 116 420-541 9-128 (148)
135 3dra_A Protein farnesyltransfe 98.8 3.4E-06 1.2E-10 77.9 25.3 226 311-545 47-302 (306)
136 4f3v_A ESX-1 secretion system 98.8 7.6E-08 2.6E-12 86.7 13.8 136 402-543 106-248 (282)
137 4f3v_A ESX-1 secretion system 98.8 4.6E-08 1.6E-12 88.1 12.0 128 437-567 105-239 (282)
138 4gcn_A Protein STI-1; structur 98.8 2.4E-08 8.2E-13 79.8 9.1 94 471-564 9-111 (127)
139 2kck_A TPR repeat; tetratricop 98.8 3.6E-08 1.2E-12 76.7 10.0 99 469-567 5-108 (112)
140 3gyz_A Chaperone protein IPGC; 98.8 1E-08 3.5E-13 84.3 6.6 104 430-536 31-138 (151)
141 3rjv_A Putative SEL1 repeat pr 98.8 5E-07 1.7E-11 79.7 17.9 159 295-463 16-197 (212)
142 3q49_B STIP1 homology and U bo 98.8 6.4E-08 2.2E-12 78.7 11.3 100 468-567 7-108 (137)
143 2xcb_A PCRH, regulatory protei 98.7 4.2E-08 1.4E-12 80.4 9.8 114 430-546 13-130 (142)
144 1elw_A TPR1-domain of HOP; HOP 98.7 1.1E-07 3.9E-12 74.6 10.7 93 472-564 6-100 (118)
145 2dba_A Smooth muscle cell asso 98.7 3.2E-07 1.1E-11 75.5 13.5 112 434-548 28-145 (148)
146 3u3w_A Transcriptional activat 98.7 2.4E-06 8.3E-11 79.7 20.9 158 373-531 81-266 (293)
147 2fbn_A 70 kDa peptidylprolyl i 98.7 1.4E-07 4.6E-12 82.4 11.4 95 471-565 89-186 (198)
148 3upv_A Heat shock protein STI1 98.7 1.7E-07 5.9E-12 74.8 11.0 111 435-548 5-124 (126)
149 1elw_A TPR1-domain of HOP; HOP 98.7 3.9E-07 1.3E-11 71.5 13.0 111 434-546 4-116 (118)
150 3rkv_A Putative peptidylprolyl 98.7 1.7E-07 5.7E-12 78.8 11.3 64 502-565 63-126 (162)
151 2lni_A Stress-induced-phosphop 98.7 1.1E-07 3.7E-12 76.7 9.8 97 469-565 15-113 (133)
152 2hr2_A Hypothetical protein; a 98.7 7.3E-08 2.5E-12 78.1 8.4 63 503-565 58-131 (159)
153 2e2e_A Formate-dependent nitri 98.7 2.5E-07 8.4E-12 79.1 12.3 127 409-540 21-153 (177)
154 2xev_A YBGF; tetratricopeptide 98.7 9.7E-08 3.3E-12 76.6 9.2 91 475-565 7-105 (129)
155 3sz7_A HSC70 cochaperone (SGT) 98.6 3.1E-07 1.1E-11 77.3 12.5 95 470-564 11-107 (164)
156 3gw4_A Uncharacterized protein 98.6 5.9E-07 2E-11 78.6 14.9 152 410-564 4-175 (203)
157 1na0_A Designed protein CTPR3; 98.6 2.2E-07 7.4E-12 73.8 10.9 96 470-565 9-106 (125)
158 2vyi_A SGTA protein; chaperone 98.6 3.6E-07 1.2E-11 73.2 11.8 97 469-565 11-109 (131)
159 2qfc_A PLCR protein; TPR, HTH, 98.6 7.1E-07 2.4E-11 83.4 15.2 161 370-531 78-266 (293)
160 2dba_A Smooth muscle cell asso 98.6 3E-07 1E-11 75.7 11.0 97 469-565 27-128 (148)
161 1wao_1 Serine/threonine protei 98.6 1.5E-07 5.2E-12 94.2 10.7 119 440-561 12-135 (477)
162 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 4.7E-07 1.6E-11 90.3 14.2 96 470-565 317-415 (457)
163 3q49_B STIP1 homology and U bo 98.5 6.5E-07 2.2E-11 72.6 11.1 112 433-547 8-127 (137)
164 2if4_A ATFKBP42; FKBP-like, al 98.5 2.5E-07 8.6E-12 88.2 9.9 147 400-567 181-330 (338)
165 4gcn_A Protein STI-1; structur 98.5 5.3E-07 1.8E-11 71.9 10.2 101 436-540 10-120 (127)
166 3k9i_A BH0479 protein; putativ 98.5 7E-08 2.4E-12 75.9 4.7 83 483-565 3-90 (117)
167 1p5q_A FKBP52, FK506-binding p 98.5 6.2E-07 2.1E-11 85.4 12.0 98 470-567 147-261 (336)
168 1a17_A Serine/threonine protei 98.5 6.1E-07 2.1E-11 75.5 10.7 98 470-567 13-112 (166)
169 2fbn_A 70 kDa peptidylprolyl i 98.5 1.1E-06 3.9E-11 76.5 12.7 63 503-565 89-151 (198)
170 1wao_1 Serine/threonine protei 98.5 5E-07 1.7E-11 90.4 11.5 114 407-526 15-134 (477)
171 3q7a_A Farnesyltransferase alp 98.5 1.2E-05 4.2E-10 75.0 19.7 226 300-564 57-330 (349)
172 1elr_A TPR2A-domain of HOP; HO 98.5 4.2E-07 1.4E-11 72.8 8.4 93 472-564 6-107 (131)
173 2c2l_A CHIP, carboxy terminus 98.5 8.5E-07 2.9E-11 82.1 11.5 113 433-548 3-118 (281)
174 3dss_A Geranylgeranyl transfer 98.5 1.8E-05 6.2E-10 73.5 20.2 165 397-567 107-306 (331)
175 1hxi_A PEX5, peroxisome target 98.5 8.8E-07 3E-11 69.8 9.9 97 437-536 20-119 (121)
176 3gw4_A Uncharacterized protein 98.5 1E-06 3.5E-11 77.1 11.3 154 379-532 4-177 (203)
177 4b4t_Q 26S proteasome regulato 98.4 1.7E-06 6E-11 86.0 13.8 164 401-564 58-244 (434)
178 2hr2_A Hypothetical protein; a 98.4 3.1E-07 1.1E-11 74.4 6.6 74 472-545 59-145 (159)
179 2xev_A YBGF; tetratricopeptide 98.4 3E-06 1E-10 67.7 12.4 104 439-545 7-119 (129)
180 3q7a_A Farnesyltransferase alp 98.4 0.00019 6.4E-09 67.1 25.6 175 270-449 58-257 (349)
181 1ihg_A Cyclophilin 40; ppiase 98.4 1.1E-06 3.6E-11 84.7 11.0 90 469-558 272-363 (370)
182 3ro3_A PINS homolog, G-protein 98.4 8E-07 2.7E-11 74.4 8.7 129 436-564 11-157 (164)
183 2l6j_A TPR repeat-containing p 98.4 1.1E-07 3.9E-12 73.8 3.0 95 469-563 3-105 (111)
184 3rkv_A Putative peptidylprolyl 98.4 8.8E-07 3E-11 74.3 8.6 79 470-548 63-144 (162)
185 1elr_A TPR2A-domain of HOP; HO 98.4 1.5E-06 5.1E-11 69.5 9.6 112 435-549 5-125 (131)
186 2kck_A TPR repeat; tetratricop 98.4 2.6E-06 9E-11 65.9 10.6 101 434-536 6-111 (112)
187 3k9i_A BH0479 protein; putativ 98.3 4.4E-07 1.5E-11 71.2 5.0 93 447-540 3-99 (117)
188 3ma5_A Tetratricopeptide repea 98.3 2.4E-06 8.3E-11 64.6 8.4 67 499-565 4-70 (100)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.8E-06 1.3E-10 83.7 12.1 66 502-567 317-382 (457)
190 3dss_A Geranylgeranyl transfer 98.3 0.00017 5.9E-09 67.0 22.0 191 348-546 90-319 (331)
191 1ihg_A Cyclophilin 40; ppiase 98.3 4.9E-06 1.7E-10 80.1 12.0 113 435-565 224-336 (370)
192 1zu2_A Mitochondrial import re 98.3 4.4E-07 1.5E-11 73.4 3.6 84 484-567 16-122 (158)
193 1dce_A Protein (RAB geranylger 98.3 3.1E-05 1.1E-09 78.9 18.0 166 383-554 45-244 (567)
194 3n71_A Histone lysine methyltr 98.3 4.2E-06 1.4E-10 83.1 11.2 124 444-567 319-466 (490)
195 2kat_A Uncharacterized protein 98.2 2.1E-06 7.1E-11 67.0 6.9 78 488-565 3-82 (115)
196 1na3_A Designed protein CTPR2; 98.2 5.2E-06 1.8E-10 61.3 8.7 81 470-550 9-91 (91)
197 2if4_A ATFKBP42; FKBP-like, al 98.2 3.8E-06 1.3E-10 79.9 9.6 152 367-537 179-334 (338)
198 3ro3_A PINS homolog, G-protein 98.2 5.9E-06 2E-10 68.9 9.5 134 400-533 11-160 (164)
199 4b4t_Q 26S proteasome regulato 98.2 1.3E-05 4.3E-10 79.7 12.6 160 405-564 11-203 (434)
200 3bee_A Putative YFRE protein; 98.1 1.5E-05 5.3E-10 58.6 8.4 70 499-568 3-75 (93)
201 1klx_A Cysteine rich protein B 98.1 3.7E-05 1.3E-09 62.0 10.9 111 449-567 10-128 (138)
202 2l6j_A TPR repeat-containing p 98.0 1.5E-05 5.3E-10 61.4 8.1 68 500-567 2-69 (111)
203 1dce_A Protein (RAB geranylger 98.0 8.9E-05 3E-09 75.5 15.3 149 412-566 43-222 (567)
204 3n71_A Histone lysine methyltr 98.0 3.6E-05 1.2E-09 76.4 12.1 115 478-610 317-449 (490)
205 1zu2_A Mitochondrial import re 98.0 9E-06 3.1E-10 65.7 6.1 85 449-536 17-125 (158)
206 3qwp_A SET and MYND domain-con 97.9 6.7E-05 2.3E-09 73.3 12.5 116 477-610 294-427 (429)
207 1na3_A Designed protein CTPR2; 97.9 6.3E-05 2.1E-09 55.3 9.5 65 501-565 8-72 (91)
208 2kat_A Uncharacterized protein 97.8 5.7E-05 1.9E-09 58.7 8.3 80 452-534 3-85 (115)
209 3u64_A Protein TP_0956; tetrat 97.8 0.00044 1.5E-08 61.6 13.9 87 486-572 179-276 (301)
210 3qww_A SET and MYND domain-con 97.8 6.1E-05 2.1E-09 73.4 9.2 103 483-603 311-431 (433)
211 2kc7_A BFR218_protein; tetratr 97.8 4.5E-05 1.5E-09 57.3 6.3 81 476-564 6-89 (99)
212 1klx_A Cysteine rich protein B 97.7 0.00031 1.1E-08 56.4 11.4 112 412-533 9-128 (138)
213 1pc2_A Mitochondria fission pr 97.7 0.00016 5.6E-09 57.7 8.3 64 501-564 31-99 (152)
214 3ly7_A Transcriptional activat 97.7 0.00074 2.5E-08 62.9 13.7 47 396-445 192-244 (372)
215 2kc7_A BFR218_protein; tetratr 97.6 0.00011 3.8E-09 55.0 6.5 61 507-567 5-66 (99)
216 3ma5_A Tetratricopeptide repea 97.6 0.00014 4.8E-09 54.7 6.6 66 469-534 6-73 (100)
217 3lvg_A Clathrin heavy chain 1; 97.6 1.3E-05 4.5E-10 75.8 0.9 370 164-554 53-514 (624)
218 3lvg_A Clathrin heavy chain 1; 97.6 2E-06 6.8E-11 81.2 -4.8 232 29-317 82-324 (624)
219 3qww_A SET and MYND domain-con 97.4 0.00086 2.9E-08 65.3 10.8 95 446-540 310-425 (433)
220 3ly7_A Transcriptional activat 97.4 0.0018 6.2E-08 60.4 12.2 134 430-567 190-341 (372)
221 3qwp_A SET and MYND domain-con 97.3 0.002 6.8E-08 62.9 12.0 101 441-541 294-415 (429)
222 1qsa_A Protein (soluble lytic 97.1 0.12 4.2E-06 52.5 23.0 116 412-530 228-347 (618)
223 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0027 9.2E-08 47.8 8.5 72 472-543 7-87 (104)
224 1pc2_A Mitochondria fission pr 97.0 0.0034 1.2E-07 50.1 8.4 91 449-541 13-110 (152)
225 3bee_A Putative YFRE protein; 97.0 0.0079 2.7E-07 43.9 9.8 68 467-534 3-75 (93)
226 3mkq_A Coatomer beta'-subunit; 97.0 0.047 1.6E-06 58.8 20.4 154 307-497 609-763 (814)
227 1nzn_A CGI-135 protein, fissio 96.8 0.0061 2.1E-07 46.7 8.3 87 449-537 16-109 (126)
228 3mkq_A Coatomer beta'-subunit; 96.8 0.12 4E-06 55.7 21.5 100 173-289 660-759 (814)
229 1wy6_A Hypothetical protein ST 96.7 0.13 4.4E-06 39.4 15.3 141 408-568 17-157 (172)
230 4h7y_A Dual specificity protei 96.7 0.0051 1.8E-07 48.1 7.1 51 516-566 74-124 (161)
231 3mkq_B Coatomer subunit alpha; 96.5 0.15 5.2E-06 41.7 15.2 104 375-497 13-116 (177)
232 4gns_B Protein CSD3, chitin bi 96.3 0.015 5.1E-07 60.2 10.3 56 508-563 343-398 (754)
233 1nzn_A CGI-135 protein, fissio 96.2 0.063 2.2E-06 41.1 10.3 86 412-501 15-106 (126)
234 2v5f_A Prolyl 4-hydroxylase su 96.0 0.019 6.4E-07 43.1 7.1 64 502-565 5-75 (104)
235 1y8m_A FIS1; mitochondria, unk 96.0 0.2 6.9E-06 39.0 12.5 65 500-564 37-105 (144)
236 3u64_A Protein TP_0956; tetrat 95.7 0.022 7.6E-07 50.8 6.8 81 451-534 180-272 (301)
237 3mkq_B Coatomer subunit alpha; 95.6 0.77 2.6E-05 37.6 16.9 129 274-424 13-141 (177)
238 4h7y_A Dual specificity protei 95.1 0.17 5.8E-06 39.7 9.2 104 434-539 13-131 (161)
239 3o48_A Mitochondria fission 1 95.0 0.11 3.7E-06 39.9 7.9 45 520-564 61-106 (134)
240 3lpz_A GET4 (YOR164C homolog); 94.6 2.6 9E-05 38.6 18.9 164 68-259 38-215 (336)
241 1wy6_A Hypothetical protein ST 94.6 1.1 3.9E-05 34.4 14.9 141 307-467 17-157 (172)
242 3ffl_A Anaphase-promoting comp 94.2 0.15 5.2E-06 41.0 7.3 125 428-564 12-150 (167)
243 4b4t_P 26S proteasome regulato 94.2 1.4 4.7E-05 43.0 15.7 260 8-295 29-324 (445)
244 2wpv_A GET4, UPF0363 protein Y 93.6 4.1 0.00014 37.1 18.3 163 68-258 36-215 (312)
245 2wpv_A GET4, UPF0363 protein Y 93.6 4.2 0.00014 37.1 21.1 181 241-463 23-217 (312)
246 3ffl_A Anaphase-promoting comp 93.5 0.65 2.2E-05 37.4 9.6 24 474-497 126-149 (167)
247 3o48_A Mitochondria fission 1 92.3 1 3.5E-05 34.6 8.8 75 467-541 37-117 (134)
248 1y8m_A FIS1; mitochondria, unk 91.8 1.8 6.3E-05 33.7 9.8 74 467-540 36-115 (144)
249 1v54_E Cytochrome C oxidase po 91.3 0.82 2.8E-05 32.9 6.7 59 13-72 28-86 (109)
250 3txn_A 26S proteasome regulato 91.2 4.9 0.00017 38.1 14.3 88 475-562 104-207 (394)
251 4fhn_B Nucleoporin NUP120; pro 91.2 3.1 0.00011 46.4 15.1 24 371-394 846-869 (1139)
252 4ady_A RPN2, 26S proteasome re 90.1 22 0.00075 37.9 30.4 249 174-426 383-657 (963)
253 2ff4_A Probable regulatory pro 89.6 0.8 2.7E-05 43.8 7.6 61 504-564 173-233 (388)
254 1zbp_A Hypothetical protein VP 89.3 5 0.00017 35.3 11.5 151 407-584 6-167 (273)
255 4b4t_P 26S proteasome regulato 88.5 19 0.00065 35.0 21.4 97 401-497 140-245 (445)
256 1qsa_A Protein (soluble lytic 87.9 25 0.00087 35.7 34.3 248 169-426 76-347 (618)
257 2y69_E Cytochrome C oxidase su 87.2 2.1 7.2E-05 32.7 6.7 64 45-108 68-132 (152)
258 4ady_A RPN2, 26S proteasome re 87.1 35 0.0012 36.5 30.3 259 240-504 383-663 (963)
259 2uwj_G Type III export protein 87.1 4.1 0.00014 29.1 7.7 81 42-128 18-98 (115)
260 2uwj_G Type III export protein 87.0 6.7 0.00023 28.1 8.8 86 246-336 21-106 (115)
261 2p58_C Putative type III secre 86.5 7.2 0.00025 28.0 9.4 86 246-336 22-107 (116)
262 1zbp_A Hypothetical protein VP 86.3 0.77 2.6E-05 40.4 4.6 54 480-533 7-62 (273)
263 2p58_C Putative type III secre 86.2 4.3 0.00015 29.1 7.4 81 42-128 19-99 (116)
264 1v54_E Cytochrome C oxidase po 85.5 8.4 0.00029 27.8 8.9 63 211-274 25-87 (109)
265 2ff4_A Probable regulatory pro 84.7 6.3 0.00022 37.6 10.8 70 402-474 175-249 (388)
266 3esl_A Checkpoint serine/threo 83.8 18 0.00061 30.2 12.9 63 504-567 82-146 (202)
267 3lpz_A GET4 (YOR164C homolog); 83.5 27 0.00093 32.0 26.3 164 272-462 41-215 (336)
268 3txn_A 26S proteasome regulato 83.4 31 0.0011 32.6 20.2 282 268-567 21-345 (394)
269 4fhn_B Nucleoporin NUP120; pro 83.0 23 0.00078 39.5 15.7 142 372-516 817-985 (1139)
270 4gns_B Protein CSD3, chitin bi 81.4 7.6 0.00026 40.4 10.3 51 407-460 346-397 (754)
271 3ltm_A Alpha-REP4; protein eng 80.6 25 0.00085 29.6 18.5 146 373-530 39-184 (211)
272 2y69_E Cytochrome C oxidase su 79.6 19 0.00064 27.7 9.1 62 212-274 69-130 (152)
273 4a1g_A Mitotic checkpoint seri 76.0 19 0.00063 28.6 8.7 47 521-567 84-132 (152)
274 4b4t_R RPN7, 26S proteasome re 75.5 7.1 0.00024 37.8 7.8 60 436-496 133-194 (429)
275 3ltj_A Alpharep-4; protein eng 74.8 35 0.0012 28.3 18.6 152 366-529 27-178 (201)
276 2qx5_A Nucleoporin NIC96; mRNA 71.1 72 0.0025 32.6 13.9 81 303-394 300-383 (661)
277 2wvi_A Mitotic checkpoint seri 70.9 26 0.00089 28.2 8.6 47 521-567 79-127 (164)
278 4b4t_R RPN7, 26S proteasome re 67.9 44 0.0015 32.2 11.4 62 198-259 133-196 (429)
279 3esl_A Checkpoint serine/threo 64.7 61 0.0021 27.0 10.7 57 411-469 92-149 (202)
280 1wdy_A 2-5A-dependent ribonucl 58.7 94 0.0032 27.2 12.2 52 35-90 7-61 (285)
281 1wdy_A 2-5A-dependent ribonucl 56.1 1E+02 0.0035 26.9 13.4 71 16-90 19-94 (285)
282 4b4t_S RPN3, 26S proteasome re 55.9 57 0.0019 32.0 9.4 67 470-536 231-304 (523)
283 1k1a_A B-cell lymphoma 3-encod 55.2 88 0.003 26.6 10.3 54 37-90 13-68 (241)
284 4b4t_S RPN3, 26S proteasome re 54.3 43 0.0015 32.9 8.3 60 434-497 231-297 (523)
285 3eu9_A Huntingtin-interacting 53.8 73 0.0025 27.0 9.5 22 71-92 45-66 (240)
286 2pk8_A Uncharacterized protein 53.0 11 0.00037 26.3 2.8 26 593-618 13-38 (103)
287 3kea_A K1L; tropism, ANK repea 52.6 1.2E+02 0.0043 26.8 14.0 50 37-90 35-84 (285)
288 3bqo_A Telomeric repeat-bindin 52.3 54 0.0018 27.1 7.2 41 508-548 123-163 (211)
289 1ya0_A SMG-7 transcript varian 51.5 38 0.0013 33.3 7.7 42 515-556 165-206 (497)
290 2d2s_A Exocyst complex compone 49.7 63 0.0021 27.9 7.9 22 203-224 25-46 (235)
291 4gq2_M Nucleoporin NUP120; bet 49.0 1.2E+02 0.004 33.0 11.7 62 475-536 845-932 (950)
292 4aez_C MAD3, mitotic spindle c 45.8 75 0.0026 27.0 7.5 49 519-567 131-181 (223)
293 3ygs_P Procaspase 9; apoptosis 44.0 86 0.0029 22.4 6.9 38 179-216 51-88 (97)
294 3ltj_A Alpharep-4; protein eng 43.7 1.3E+02 0.0046 24.6 20.4 23 290-312 52-74 (201)
295 3ltm_A Alpha-REP4; protein eng 43.3 1.4E+02 0.0048 24.7 19.7 48 366-413 125-172 (211)
296 4a1g_A Mitotic checkpoint seri 42.7 1.2E+02 0.0042 23.9 9.5 52 415-468 82-134 (152)
297 3jxi_A Vanilloid receptor-rela 42.3 1.1E+02 0.0039 26.4 9.0 52 39-90 11-71 (260)
298 3hra_A Ankyrin repeat family p 42.3 1.4E+02 0.0047 24.3 11.8 18 75-92 12-29 (201)
299 2ion_A PDCD4, programmed cell 41.6 1.2E+02 0.0041 24.0 7.8 66 168-233 12-82 (152)
300 3eiq_C Programmed cell death p 40.5 2.3E+02 0.0078 26.3 15.2 66 270-335 221-291 (358)
301 3b7b_A Euchromatic histone-lys 40.3 1.7E+02 0.0057 24.7 11.0 15 176-190 152-166 (237)
302 3eu9_A Huntingtin-interacting 40.1 1.7E+02 0.0057 24.6 10.6 13 177-189 118-130 (240)
303 2d2s_A Exocyst complex compone 39.6 1.2E+02 0.0042 26.1 8.2 23 303-325 24-46 (235)
304 3kae_A CDC27, possible protein 38.3 1.6E+02 0.0054 23.8 11.3 82 480-564 43-142 (242)
305 1n11_A Ankyrin; clathrin, BAND 38.0 1.5E+02 0.005 28.3 9.7 326 170-527 16-366 (437)
306 1n11_A Ankyrin; clathrin, BAND 37.7 2.4E+02 0.0083 26.7 11.3 315 148-495 26-366 (437)
307 2ion_A PDCD4, programmed cell 37.5 1.5E+02 0.0052 23.4 9.2 64 270-333 13-81 (152)
308 2wvi_A Mitotic checkpoint seri 36.9 1.6E+02 0.0055 23.6 10.3 52 416-469 78-130 (164)
309 2ko4_A Mediator of RNA polymer 36.9 70 0.0024 21.7 4.6 41 85-125 23-63 (81)
310 3kea_A K1L; tropism, ANK repea 36.7 2.2E+02 0.0076 25.1 12.9 18 73-90 36-53 (285)
311 1oyz_A Hypothetical protein YI 36.6 2.2E+02 0.0074 24.9 21.3 18 468-485 204-221 (280)
312 3bu8_A Telomeric repeat-bindin 35.5 1.4E+02 0.0049 25.1 7.3 48 450-497 88-141 (235)
313 2r9g_A AAA ATPase, central reg 35.4 1.9E+02 0.0066 24.0 9.1 56 308-364 25-85 (204)
314 2fu4_A Ferric uptake regulatio 35.0 87 0.003 21.3 5.5 61 19-80 6-67 (83)
315 3hra_A Ankyrin repeat family p 34.5 1.9E+02 0.0063 23.5 8.7 19 174-192 11-29 (201)
316 3b7b_A Euchromatic histone-lys 33.7 2.1E+02 0.0073 24.0 10.6 12 178-189 87-98 (237)
317 3ljn_A Hypothetical protein; a 33.4 2.7E+02 0.0094 25.5 10.6 89 35-130 22-113 (364)
318 1k1a_A B-cell lymphoma 3-encod 32.8 2.2E+02 0.0076 23.9 13.9 84 5-92 16-103 (241)
319 2fe3_A Peroxide operon regulat 32.4 1.4E+02 0.0046 23.3 6.8 41 199-239 24-64 (145)
320 2nsz_A Programmed cell death p 31.4 1.7E+02 0.0059 22.2 10.6 64 270-333 11-79 (129)
321 3aji_A 26S proteasome non-ATPa 31.4 2.3E+02 0.0078 23.6 10.0 14 76-89 14-27 (231)
322 3jxi_A Vanilloid receptor-rela 30.4 1.9E+02 0.0064 24.9 8.4 16 175-190 100-115 (260)
323 3ygs_P Procaspase 9; apoptosis 30.4 70 0.0024 22.9 4.4 38 280-317 51-88 (97)
324 4gq2_M Nucleoporin NUP120; bet 30.2 4.5E+02 0.015 28.4 12.5 53 271-324 815-867 (950)
325 3qil_A Clathrin heavy chain 1; 30.2 31 0.0011 25.9 2.4 72 4-87 15-86 (125)
326 3kae_A CDC27, possible protein 30.1 2.2E+02 0.0075 23.0 15.1 177 378-568 44-240 (242)
327 3ljn_A Hypothetical protein; a 29.8 2.4E+02 0.0082 25.9 9.5 54 173-226 58-111 (364)
328 2w57_A Ferric uptake regulatio 29.7 1.3E+02 0.0043 23.7 6.2 64 18-82 5-69 (150)
329 2zu6_B Programmed cell death p 29.6 3.2E+02 0.011 24.7 10.9 213 68-283 6-254 (307)
330 2crb_A Nuclear receptor bindin 29.5 51 0.0018 23.2 3.2 27 537-563 16-42 (97)
331 2cfu_A SDSA1; SDS-hydrolase, l 29.1 91 0.0031 32.0 6.6 64 487-553 437-500 (658)
332 3d9h_A CDNA FLJ77766, highly s 28.3 2.9E+02 0.0099 24.3 9.4 19 72-90 63-81 (285)
333 1mzb_A Ferric uptake regulatio 28.3 1.2E+02 0.004 23.4 5.7 62 19-81 7-69 (136)
334 2nsz_A Programmed cell death p 28.2 2E+02 0.0067 21.9 9.6 65 169-233 11-80 (129)
335 4ets_A Ferric uptake regulatio 27.9 1.4E+02 0.0049 23.8 6.3 38 197-234 33-72 (162)
336 4ets_A Ferric uptake regulatio 27.3 1.4E+02 0.0048 23.9 6.1 70 11-81 13-85 (162)
337 2xig_A Ferric uptake regulatio 27.2 1.7E+02 0.0059 22.9 6.6 42 199-240 29-70 (150)
338 2fe3_A Peroxide operon regulat 26.6 2E+02 0.0067 22.4 6.8 59 323-382 13-71 (145)
339 2p1h_A APAF-1, apoptotic prote 24.7 1.8E+02 0.0063 20.4 6.5 38 279-316 49-86 (94)
340 3eyy_A Putative iron uptake re 24.5 1E+02 0.0034 24.1 4.7 62 18-81 7-68 (145)
341 2etb_A Transient receptor pote 24.3 1.9E+02 0.0066 24.8 7.3 18 172-189 140-157 (256)
342 1bd8_A P19INK4D CDK4/6 inhibit 23.9 2.5E+02 0.0084 21.5 8.5 15 76-90 43-57 (156)
343 3u84_A Menin; MLL, JUND, ledgf 23.5 2.7E+02 0.0091 26.3 7.6 53 535-608 317-370 (550)
344 1ug3_A EIF4GI, eukaryotic prot 23.4 4.3E+02 0.015 24.2 9.6 60 270-329 15-78 (339)
345 2ijq_A Hypothetical protein; s 23.1 1.1E+02 0.0036 24.6 4.5 52 7-58 44-103 (161)
346 3re2_A Predicted protein; meni 22.9 2.9E+02 0.01 25.5 7.6 44 521-564 276-324 (472)
347 2xig_A Ferric uptake regulatio 22.8 2.7E+02 0.0094 21.7 7.1 59 323-382 18-76 (150)
348 1oyz_A Hypothetical protein YI 22.6 3.8E+02 0.013 23.3 23.8 83 364-450 139-222 (280)
349 3bge_A Predicted ATPase; struc 22.5 3.3E+02 0.011 22.6 8.1 45 303-347 10-57 (201)
350 4aez_C MAD3, mitotic spindle c 21.8 3.7E+02 0.013 22.8 9.1 52 213-264 131-183 (223)
351 1mzb_A Ferric uptake regulatio 21.5 2.7E+02 0.0094 21.2 7.2 41 199-239 20-61 (136)
352 1ya0_A SMG-7 transcript varian 21.4 3E+02 0.01 27.0 8.3 76 436-514 154-232 (497)
353 3mwm_A ZUR, putative metal upt 20.6 1.3E+02 0.0045 23.2 4.6 45 35-79 18-62 (139)
354 3eyy_A Putative iron uptake re 20.5 2E+02 0.007 22.3 5.8 33 201-234 23-55 (145)
355 2pm7_A Protein WEB1, protein t 20.1 5.5E+02 0.019 24.2 11.6 26 538-563 338-363 (399)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-40 Score=348.73 Aligned_cols=475 Identities=13% Similarity=0.022 Sum_probs=376.5
Q ss_pred hhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh----hhhhHH
Q 006997 75 YSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS----FRQGIS 150 (622)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~ 150 (622)
+.+.|....+...+..++ .+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+...+. .+.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS--LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccch--HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 445566666677777666 56777788888888888888888888888774 4566666666666555 556666
Q ss_pred HHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCC-------------------CcchHHHHHHHHHcCCC
Q 006997 151 MHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGET-------------------SIVSWTTIIGGYVNVGN 211 (622)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~ 211 (622)
++..+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 139 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 139 LLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 66655332 237788899999999999999999999854433 36789999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChHHH--HHH-HHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 006997 212 VNEAFGLCNQMRRMSVTPD-LVVFLNLILGCAQVGNLFLA--LSM-HSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARR 287 (622)
Q Consensus 212 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 287 (622)
+++|+++|++|.+.+ |+ ...+..+...+...+..+.+ ..+ +..+...+..+...+++.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998753 43 44444444433333222211 111 3344444444445566777888999999999999
Q ss_pred HHhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC
Q 006997 288 VFDAVLE--KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLES 365 (622)
Q Consensus 288 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 365 (622)
+|+++.+ +++.+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 9999987 789999999999999999999999999999875 3477889999999999999999999999998765 66
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVP---DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSIL 441 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll 441 (622)
+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+ ..| +..++..++
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~ 448 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR---LFQGTHLPYLFLG 448 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TTTTCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHH
Confidence 78999999999999999999999999875 34678999999999999999999999999997 445 678999999
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCc--HHhHHHHHHHH
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-------VEVQ--AQVWAPLLSAC 512 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~ 512 (622)
.+|.+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 9999999999999999999865 24478899999999999999999999999884 3676 67999999999
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 513 MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
.+.|++++|++.++++++++|+++.+|..++.+|.+.|++++|.+.|+++.+.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-40 Score=349.47 Aligned_cols=495 Identities=9% Similarity=0.012 Sum_probs=412.5
Q ss_pred CCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHH
Q 006997 28 GNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISA 107 (622)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~ 107 (622)
++...|+.++..|.+.|++++|..+++.+... .|+..++..++..|.+.|++++|..+|+.+...+++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 56778999999999999999999999999965 4788899999999999999999999999986557889999999999
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHH
Q 006997 108 HSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSI 187 (622)
Q Consensus 108 ~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 187 (622)
|.+.|++++|+++|+++. |+...- ..+. ...-...+... +..+++.++.+|.+.|++++|.+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~-----~~~~~~----~~~~-------~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETN-----PFRKDE----KNAN-------KLLMQDGGIKL-EASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHTTCHHHHHHHHCSSC-----TTC---------------------CCCSSCCH-HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhHHHHHHHHhccC-----Cccccc----cccc-------cccccccccch-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998532 221000 0000 00000011222 677889999999999999999999
Q ss_pred HhhcCC--C-CcchHHHHHHHHHcCCChhHHHH--H-HHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 006997 188 FDEIGE--T-SIVSWTTIIGGYVNVGNVNEAFG--L-CNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSG 261 (622)
Q Consensus 188 ~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~--~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 261 (622)
|+++.+ | +...+..+...+...+..+.+.. + +..+...+..++..+|+.++..|.+.|++++|.++++.+.+.
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 999975 3 33455556555544433332221 1 455555555556667778888999999999999999998776
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006997 262 YNNEDPLDNLLVSMYTKCGDLELARRVFDAVL---EKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATT 338 (622)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 338 (622)
+++..+++.++..|.+.|++++|.++|+++. ..+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..+
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 379 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAV 379 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 6889999999999999999999999999885 3367889999999999999999999999998653 4578899999
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHH
Q 006997 339 LSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGD 415 (622)
Q Consensus 339 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 415 (622)
+..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|..++.+|.+.|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998865 55788999999999999999999999998753 47789999999999999999
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhc---CCCCC--hhHHHHHHHHHHhcCChHHH
Q 006997 416 QALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNF---GIEPS--IEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A 489 (622)
+|.++|+++.+ ..| +..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|
T Consensus 459 ~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 459 LANEYLQSSYA---LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHH---HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999997 344 57899999999999999999999999997542 55776 78999999999999999999
Q ss_pred HHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 490 LKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 490 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
.+.++++. .+.+..+|..++.+|...|++++|.+.++++++++|+++..+..++.+|..
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999986 445788999999999999999999999999999999999999999988754
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.2e-28 Score=238.17 Aligned_cols=372 Identities=13% Similarity=0.084 Sum_probs=312.8
Q ss_pred HHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 006997 171 VMSMYAKFGKVNEARSIFDEIGE--T-SIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNL 247 (622)
Q Consensus 171 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 247 (622)
+...+.+.|++++|.+.++.+.+ | +...+..+...+.+.|++++|...++...... +.+..+|..+...+...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45667788999999999988753 3 44567777788889999999999998887753 45678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006997 248 FLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE--K-SVFLWTSMIGGYAQLGYPSEAVNLFKRLL 324 (622)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 324 (622)
++|...|+.+.+.. |.+...+..+..++.+.|++++|.+.|+++.. | +...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999998875 55666788999999999999999999988743 3 45678888888999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHH
Q 006997 325 KTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVW 401 (622)
Q Consensus 325 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 401 (622)
+.. +.+..++..+...+...|+++.|...++.+.+.+ +.+...+..+...+...|++++|...|++... .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 763 3356788888889999999999999999998876 55677888899999999999999999887652 356788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 006997 402 SAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLL 480 (622)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 480 (622)
..+..+|...|++++|++.|+++.+ ..|+ ..++..+..++.+.|++++|...|+++.+. .+.+..++..++..+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHH
Confidence 8899999999999999999999988 5665 678888999999999999999999999865 245788889999999
Q ss_pred HhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006997 481 GRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGM 551 (622)
Q Consensus 481 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (622)
.+.|++++|.+.++++. . +.+..++..++.++.+.|++++|...++++++++|+++.++..++.++.+.|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999886 3 44477888999999999999999999999999999999999999999888774
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-27 Score=234.75 Aligned_cols=353 Identities=17% Similarity=0.131 Sum_probs=311.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 006997 202 IIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGD 281 (622)
Q Consensus 202 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 281 (622)
+...+.+.|++++|.+.+.++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456788999999999999988753 3345566677778888999999999999998875 7788899999999999999
Q ss_pred HHHHHHHHhhcC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 006997 282 LELARRVFDAVL--EK-SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYI 358 (622)
Q Consensus 282 ~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 358 (622)
+++|...|+++. .| +..+|..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999874 23 56789999999999999999999999999864 224456677888889999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-H
Q 006997 359 VLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-A 434 (622)
Q Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~ 434 (622)
.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+ ..|+ .
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~ 237 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS---LSPNHA 237 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH---HCTTCH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCCH
Confidence 8875 55678899999999999999999999998863 3556888899999999999999999999988 5675 6
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
.++..+..++...|++++|...|+++.+. .| ++..+..++..|.+.|++++|++.++++. .+++..+|..++..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 78899999999999999999999999854 45 57889999999999999999999999986 56678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+...|++++|...+++++++.|+++.++..++.+|.+.|++++|.+.|+++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999986
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.2e-27 Score=239.58 Aligned_cols=211 Identities=12% Similarity=0.103 Sum_probs=165.8
Q ss_pred hHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccC
Q 006997 13 ETLSTYSSMLQTGVHGNSF-TFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEM 91 (622)
Q Consensus 13 ~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 91 (622)
.+..+.+.+.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3455667777777766554 58889999999999999999999999999999999999999999887754321
Q ss_pred CCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHH
Q 006997 92 PVRLRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSV 171 (622)
Q Consensus 92 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (622)
.+.+.+++|.++|++|.+.|+.||..|| ++|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~ty--------------------------------n~l 111 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATF--------------------------------TNG 111 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHH--------------------------------HHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHH--------------------------------HHH
Confidence 1234567888888888888888877666 777
Q ss_pred HHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh
Q 006997 172 MSMYAKFGKVNEARSIFDEIGE----TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNL 247 (622)
Q Consensus 172 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 247 (622)
|.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.|++
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 7778888888888888888753 788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc
Q 006997 248 FLALSMHSLLLKSGYNNEDPLDNLLVSMYTKC 279 (622)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (622)
++|.+++++|.+.|..|+..||+.++..++..
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999888887753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=8.9e-27 Score=233.40 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=167.9
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCCch
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGN---------LFLALSMHSLLLKSGYNNEDP 267 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 267 (622)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006997 268 LDNLLVSMYTKCGDLELARRVFDAVL----EKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACA 343 (622)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 343 (622)
+|++++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999884 56899999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006997 344 ELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKC 380 (622)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (622)
+.|++++|.+++++|.+.+..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7e-25 Score=225.66 Aligned_cols=225 Identities=15% Similarity=0.021 Sum_probs=120.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHH
Q 006997 334 TLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAI 410 (622)
Q Consensus 334 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 410 (622)
.+..+...+...|+++.|...++.+.+.... ...+..+..+|...|++++|...|+++.. .+...+..+...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555444322 44455555555555555555555554432 233455555555555
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006997 411 HGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 489 (622)
.|++++|...++++.+ ..|+ ...+..+...+...|++++|...++++... .+.+...+..+...|.+.|++++|
T Consensus 317 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKE---LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp TTCTTHHHHHHHHHHH---TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHH
T ss_pred hCCHHHHHHHHHHHHH---hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHH
Confidence 5666666666655554 3332 345555555555666666666666555533 122344555555566666666666
Q ss_pred HHHHHhCC----CCCc----HHhHHHHHHHHHh---cCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH
Q 006997 490 LKTIHEMP----VEVQ----AQVWAPLLSACMK---HHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATA 558 (622)
Q Consensus 490 ~~~~~~~~----~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 558 (622)
...++++. ..++ ...|..++..+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66655543 1111 2255555555555 56666666666666666665556666666666666666666666
Q ss_pred HHHhhhC
Q 006997 559 RGLMDDR 565 (622)
Q Consensus 559 ~~~~~~~ 565 (622)
++++.+.
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.9e-24 Score=220.06 Aligned_cols=371 Identities=11% Similarity=0.005 Sum_probs=312.2
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGE--TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGC 241 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 241 (622)
....+......+.+.|++++|...|+++.. |+...|..+..++.+.|++++|+..++++.+.+ +.+...+..+...+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345677788999999999999999999865 788899999999999999999999999998864 34567899999999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCC--------------------------------------------------------
Q 006997 242 AQVGNLFLALSMHSLLLKSGYNNE-------------------------------------------------------- 265 (622)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------------------------- 265 (622)
...|++++|...|+.+.+.+. ++
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999987652 11
Q ss_pred -----------------------chhHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-CHHHHHH
Q 006997 266 -----------------------DPLDNLLVSMYTK---CGDLELARRVFDAVLE----------------K-SVFLWTS 302 (622)
Q Consensus 266 -----------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~ 302 (622)
...+..+...+.. .|++++|...|+++.. + +..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 2222233333333 8999999999988754 1 3467888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGR 382 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (622)
+...+...|++++|...|+++.+... +...+..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999998753 37788889999999999999999999998875 5567788999999999999
Q ss_pred hHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHH
Q 006997 383 INKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFK 458 (622)
Q Consensus 383 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 458 (622)
+++|...|+++.+ .+...+..+...+...|++++|...++++.+ ..| +...+..+..++...|++++|...++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR---KFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998752 4567888899999999999999999999987 445 46788889999999999999999999
Q ss_pred HhHHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006997 459 SMQSNFGIEPS----IEHYLCLVDLLGR---AGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLL 529 (622)
Q Consensus 459 ~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 529 (622)
++.....-.++ ...+..+...+.. .|++++|...++++. .+.+..++..++..+...|++++|...+++++
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98865222222 3388899999999 999999999999886 44457788999999999999999999999999
Q ss_pred ccCCCCCchHHHH
Q 006997 530 TLNPGSTGNYILM 542 (622)
Q Consensus 530 ~~~p~~~~~~~~l 542 (622)
+++|+++..+..+
T Consensus 477 ~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 DLARTMEEKLQAI 489 (514)
T ss_dssp HHCSSHHHHHHHH
T ss_pred HhccccHHHHHHH
Confidence 9999888877766
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.2e-23 Score=208.47 Aligned_cols=341 Identities=12% Similarity=0.056 Sum_probs=247.4
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 006997 195 SIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVS 274 (622)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (622)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34567777777777777777777777776542 3345666666666667777777777777666654 344455555555
Q ss_pred HHHhcCCHHHHHHHHhhcCCCC---H---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 006997 275 MYTKCGDLELARRVFDAVLEKS---V---FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSL 348 (622)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 348 (622)
+|.+.|++++|...|+++...+ . ..+..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 5555555555555555553321 1 3333333321111 112223446677888
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 006997 349 SKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQ 425 (622)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 425 (622)
+.|...++.+.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888887765 55677788888888888888888888887753 467788889999999999999999999998
Q ss_pred HhcCCCCCH-HHHHHH------------HHHHhccCchHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChH
Q 006997 426 HVEGLKPDA-VVYTSI------------LSACSHSGMVDDGLSFFKSMQSNFGIEPS-----IEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 426 ~~~~~~p~~-~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~ 487 (622)
+ ..|+. ..+..+ ..+|...|++++|...|+++... .|+ ...+..++.++.+.|+++
T Consensus 239 ~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 239 K---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp H---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred H---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 7 55654 334333 78899999999999999999864 554 457888999999999999
Q ss_pred HHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH------------HHHHhcC---
Q 006997 488 LALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMA------------NLFTSAG--- 550 (622)
Q Consensus 488 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g--- 550 (622)
+|+..++++. .+.+...|..++.+|...|++++|...++++++++|+++.++..++ +.|...|
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 9999999976 4456889999999999999999999999999999999999999999 4466666
Q ss_pred --ChHHHHHHHHH-hhhCCC
Q 006997 551 --MWKEAATARGL-MDDRRL 567 (622)
Q Consensus 551 --~~~~A~~~~~~-~~~~~~ 567 (622)
+.+++.+.|++ ..+..+
T Consensus 393 ~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCG
T ss_pred cCCHHHHHHHHHHHHHHhCC
Confidence 66777888876 444333
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.4e-23 Score=215.44 Aligned_cols=424 Identities=14% Similarity=0.038 Sum_probs=270.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhc
Q 006997 99 VSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKF 178 (622)
Q Consensus 99 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (622)
..|..+...+.+.|++++|++.|+++.+.. |+ +..++..+...|...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~la~~~~~~ 72 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PN-------------------------------EPVFYSNISACYIST 72 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TT-------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CC-------------------------------CcHHHHHHHHHHHHc
Confidence 445555666666666666666666665531 22 445555666666666
Q ss_pred CChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 006997 179 GKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHS 255 (622)
Q Consensus 179 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 255 (622)
|++++|.+.|+++.+ .+..+|..+..++...|++++|+..|+.+.. .|+.. ...+..+...+....+...++
T Consensus 73 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~ 147 (537)
T 3fp2_A 73 GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLN 147 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665543 2345566666666666666666666643211 22211 111222333334455666665
Q ss_pred HHHHhC--CCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHh--------cCChHHHHHHHHH
Q 006997 256 LLLKSG--YNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVF---LWTSMIGGYAQ--------LGYPSEAVNLFKR 322 (622)
Q Consensus 256 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~ 322 (622)
.+.... ..+........+..+....+.+.+...+......+.. ....+...+.. .|++++|..+|++
T Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp HHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 554321 0111111233344455566666666666555444332 23333322222 2467788888888
Q ss_pred HHhCCCCCC------HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-
Q 006997 323 LLKTSVRPN------EATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD- 395 (622)
Q Consensus 323 m~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 395 (622)
+.+...... ..++..+...+...|+++.|...++.+.+.. |+...+..+...|...|++++|.+.|+++.+
T Consensus 228 ~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 305 (537)
T 3fp2_A 228 LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL 305 (537)
T ss_dssp HHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 776532110 1245555666777888888888888887765 3367777788888888888888888887652
Q ss_pred --CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhH
Q 006997 396 --KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEH 472 (622)
Q Consensus 396 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 472 (622)
.+..+|..+...+...|++++|...++++.+ ..|+ ...+..+..++...|++++|...++++... .+.+...
T Consensus 306 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 380 (537)
T 3fp2_A 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS---LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEV 380 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHH
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 3566788888888888899999999888887 4454 567888888888889999999999888865 1335677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-------cHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCC
Q 006997 473 YLCLVDLLGRAGRFDLALKTIHEMP-VEV-------QAQVWAPLLSACMKH----------HNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~ 534 (622)
+..+...+...|++++|.+.++++. ..| ....+..+...+... |++++|...++++++.+|+
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 8888888889999999998888864 111 122244455667777 8999999999999999998
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 535 STGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
++.++..++.+|.+.|++++|.+.|+++.+...
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999998877443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.7e-22 Score=202.51 Aligned_cols=346 Identities=13% Similarity=0.065 Sum_probs=231.4
Q ss_pred CCChhhHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006997 162 NNEIPLANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLI 238 (622)
Q Consensus 162 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 238 (622)
|.+...+..+...|.+.|++++|..+|+++.. .+..+|..+..++.+.|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 33778899999999999999999999998764 467889999999999999999999999998864 34577889999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCc---hhHHHHHHH------------HHhcCCHHHHHHHHhhcC---CCCHHHH
Q 006997 239 LGCAQVGNLFLALSMHSLLLKSGYNNED---PLDNLLVSM------------YTKCGDLELARRVFDAVL---EKSVFLW 300 (622)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~~~~~~a~~~~~~~~---~~~~~~~ 300 (622)
..+...|++++|...++.+.+.. +.+. ..+..+... +...|++++|...|+++. ..+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999998864 3344 555555443 455555555555555442 1244455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 006997 301 TSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKC 380 (622)
Q Consensus 301 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 380 (622)
..++..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+....
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~--- 255 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK--- 255 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH---
Confidence 555555555555555555555554432 2234445555555555555555555555554432 11222221110000
Q ss_pred CChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHhccCchHHHHH
Q 006997 381 GRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-----AVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 381 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
....+..+...+...|++++|...|+++.+ ..|+ ...+..+..++.+.|++++|+.
T Consensus 256 ----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 256 ----------------KLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp ----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 000112236777888888888888888887 4555 3367777788888888888888
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHH------------HHhcC----
Q 006997 456 FFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSA------------CMKHH---- 516 (622)
Q Consensus 456 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~------------~~~~~---- 516 (622)
.++++... .| +...+..+..+|...|++++|...++++. ..|+ ...+..+..+ |...|
T Consensus 317 ~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 317 VCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 88887754 34 57788888888888888888888888775 4444 5555555532 22333
Q ss_pred -CHHHHHHHHHH-HHccCCCCC
Q 006997 517 -NVELGEYAAKN-LLTLNPGST 536 (622)
Q Consensus 517 -~~~~a~~~~~~-~~~~~p~~~ 536 (622)
+.+++.+.+++ +++..|++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGC
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 56778888886 777888643
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4e-23 Score=213.80 Aligned_cols=255 Identities=11% Similarity=0.029 Sum_probs=207.7
Q ss_pred CCHHHHHHHHhhcCCC---C-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 006997 280 GDLELARRVFDAVLEK---S-------VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLS 349 (622)
Q Consensus 280 ~~~~~a~~~~~~~~~~---~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 349 (622)
|++++|..+|+++.+. + ..++..+...+...|++++|...|+++.+. .|+...+..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 4677777777776443 2 235667777888999999999999999886 456788888889999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 006997 350 KGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQH 426 (622)
Q Consensus 350 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (622)
.|...++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998876 55778899999999999999999999998763 3567888999999999999999999999998
Q ss_pred hcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhc----------CChHHHHH
Q 006997 427 VEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP----SIEHYLCLVDLLGRA----------GRFDLALK 491 (622)
Q Consensus 427 ~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~ 491 (622)
..|+ ...+..+..++...|++++|...|+++.+...-.+ ....+..+...+.+. |++++|..
T Consensus 373 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 373 ---KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp ---HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred ---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 4454 56888899999999999999999999875421111 223345566778888 99999999
Q ss_pred HHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 492 TIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 492 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
.++++. .+.+...+..++..+...|++++|.+.+++++++.|.++....
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999986 4455788999999999999999999999999999998766544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.5e-19 Score=176.40 Aligned_cols=303 Identities=15% Similarity=0.086 Sum_probs=212.0
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHH
Q 006997 231 LVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLE---KSVFLWTSMIGGY 307 (622)
Q Consensus 231 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 307 (622)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556677777778888888888888887764 55666777777777777888888777776632 2556777777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 006997 308 AQLGYPSEAVNLFKRLLKTSVRP----NEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRI 383 (622)
Q Consensus 308 ~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (622)
...|++++|...|+++.+. .| +...+..+..... ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 7777777777777777765 33 2222222211000 01122234566667777
Q ss_pred HHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHH
Q 006997 384 NKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKS 459 (622)
Q Consensus 384 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 459 (622)
++|.+.|+++.+ .+...+..+...+...|++++|...++++.+ ..| +..++..+...+...|++++|...+++
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK---LKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766542 3455666777777777888888888877776 344 456677777777778888888888877
Q ss_pred hHHhcCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhCC-CCCc-H----HhHHHHHHHHHhcCCHHH
Q 006997 460 MQSNFGIEPS-IEHYL------------CLVDLLGRAGRFDLALKTIHEMP-VEVQ-A----QVWAPLLSACMKHHNVEL 520 (622)
Q Consensus 460 ~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~~~~~~ 520 (622)
+.+. .|+ ...+. .++..+.+.|++++|...++++. ..|+ . ..+..++..+...|++++
T Consensus 214 a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 7754 333 33222 23666888899999999888875 2333 2 234557788889999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 521 GEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 521 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
|...++++++.+|+++.++..++.+|...|++++|.+.|+++.+.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988763
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=8.2e-20 Score=178.19 Aligned_cols=324 Identities=11% Similarity=0.036 Sum_probs=243.9
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 006997 195 SIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVS 274 (622)
Q Consensus 195 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (622)
|+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567888999999999999999999998863 3457788899999999999999999999999885 557788999999
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCh
Q 006997 275 MYTKCGDLELARRVFDAVLEKSV------FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSL 348 (622)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 348 (622)
.+...|++++|...|+++.+.++ ..+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999998855433 33333321100 01122334445556666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 006997 349 SKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQ 425 (622)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 425 (622)
+.|...++.+.+.. +.+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666665554 34555666666666777777777776665543 345667777777888888888888888877
Q ss_pred HhcCCCCCH-HHHH------------HHHHHHhccCchHHHHHHHHHhHHhcCCCCC-h----hHHHHHHHHHHhcCChH
Q 006997 426 HVEGLKPDA-VVYT------------SILSACSHSGMVDDGLSFFKSMQSNFGIEPS-I----EHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 426 ~~~~~~p~~-~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~ 487 (622)
+ ..|+. ..+. .+...+.+.|++++|...++++... .|+ . ..+..+..++...|+++
T Consensus 216 ~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 216 K---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp H---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred h---hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 6 44542 2222 3366788899999999999999865 344 2 23556788999999999
Q ss_pred HHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006997 488 LALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG 550 (622)
Q Consensus 488 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (622)
+|++.++++. .+.+...|..++..+...|++++|...++++++++|+++.++..+..++...+
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999886 34468889999999999999999999999999999999999998888866543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.3e-19 Score=171.69 Aligned_cols=286 Identities=11% Similarity=0.043 Sum_probs=192.0
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006997 263 NNEDPLDNLLVSMYTKCGDLELARRVFDAVLE---KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTL 339 (622)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 339 (622)
+.+..++..+...+...|++++|.++|+++.. .+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 33444445555555555555555555555422 123344445555555666666666666655542 22344555555
Q ss_pred HHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHH
Q 006997 340 SACAELG-SLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGD 415 (622)
Q Consensus 340 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 415 (622)
..+...| +++.|...++.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5566666 6666666666665544 33455566666666666666666666665542 23456666777788888888
Q ss_pred HHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCChH
Q 006997 416 QALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFG-------IEPSIEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~ 487 (622)
+|.+.++++.+ ..|+ ...+..+...+...|++++|...++++..... .+.....+..+..+|...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 88888888876 4454 56777888888888888888888888775421 1234568888888999999999
Q ss_pred HHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH-HhcCChH
Q 006997 488 LALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF-TSAGMWK 553 (622)
Q Consensus 488 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 553 (622)
+|+..++++. .+.+...|..++..+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999998876 3445778888999999999999999999999999999999999999988 4566654
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=4.1e-17 Score=173.02 Aligned_cols=467 Identities=13% Similarity=0.077 Sum_probs=335.2
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCC-----------CCCCCcch----
Q 006997 36 VLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMP-----------VRLRSVVS---- 100 (622)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~---- 100 (622)
|+..+-+++++.--...++.-...| ..++.++|+|...|...++-.+.. +.+=+ + +.|+..
T Consensus 845 lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~f--L~~n~~yd~~~vgkyce-~rDp~la~ia 920 (1630)
T 1xi4_A 845 LVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERF--LRENPYYDSRVVGKYCE-KRDPHLACVA 920 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHH--hhccCcccHHHHHHHHH-hcCcchHHHH
Confidence 3333344444444555566666667 678899999999999876544431 11110 0 111110
Q ss_pred ------HHHHHHHHHhCCCchHH-HHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCC-CCChhhHhHHH
Q 006997 101 ------WNSIISAHSRACLNDEA-ILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLL-NNEIPLANSVM 172 (622)
Q Consensus 101 ------~~~li~~~~~~~~~~~A-~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 172 (622)
-.-||..+-+++-++.- .-+.+ +-|...|..++.-.. ..-+++.+......+. ..++.-....+
T Consensus 921 y~~g~~d~eli~vt~~n~l~k~~arylv~-------r~d~~lW~~vl~~~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~v 992 (1630)
T 1xi4_A 921 YERGQCDLELINVCNENSLFKSLSRYLVR-------RKDPELWGSVLLESN-PYRRPLIDQVVQTALSETQDPEEVSVTV 992 (1630)
T ss_pred hcccCCcHHHHHHHhcchhHHHHHHHHHH-------hcCHHHHHHHhcCCc-HHHHHHHHHHHHhhcccccCHHHhHHHH
Confidence 12233333333333221 11111 134555555553322 2233444444433321 12555567788
Q ss_pred HHHHhcCChHHHHHHHhhcCC-CC-----cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 006997 173 SMYAKFGKVNEARSIFDEIGE-TS-----IVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGN 246 (622)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 246 (622)
+.|...|.+.+|+++++++.- ++ ...-|.++.+..+. +..+..++..+... .....+...+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhCCC
Confidence 999999999999999999863 22 24566677777777 55677676666542 113447778889999
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006997 247 LFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT 326 (622)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 326 (622)
+++|..+|++.. ......+.+ +-..+++++|.++.++. .+..+|..+..++...|++++|+..|.+.
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 999999999852 111112222 33788999999999977 45788999999999999999999999763
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHH
Q 006997 327 SVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMIN 406 (622)
Q Consensus 327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 406 (622)
-|...|..++.+|.+.|+++++.+++....+.. +++.+.+.++.+|++.+++++..... ..++...|..+..
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 477888999999999999999999999888765 34444556999999999999755554 3556677888999
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCh
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRF 486 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 486 (622)
.|...|++++|..+|..+. .|..+..++.+.|+++.|.+.+++.. +..+|..+..+|...|++
T Consensus 1204 ~le~eg~YeeA~~~Y~kA~----------ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHhcCCHHHHHHHHHhhh----------HHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHH
Confidence 9999999999999999853 58999999999999999999998763 568899999999999999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc--CChHHHHHHHHHh
Q 006997 487 DLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA--GMWKEAATARGLM 562 (622)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 562 (622)
..|......+. .++..+..++..|...|.+++|+.++++++.++|.+...|.-++.+|.+- ++..++.+.|..-
T Consensus 1267 ~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1267 RLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999887643 34555678999999999999999999999999999999998888888764 6777777777744
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.4e-17 Score=169.45 Aligned_cols=379 Identities=12% Similarity=0.021 Sum_probs=307.1
Q ss_pred ChhhHhHHHHHHHh----cCChHHHHHHHhhcCC-CCcchHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHhHH
Q 006997 164 EIPLANSVMSMYAK----FGKVNEARSIFDEIGE-TSIVSWTTIIGGYVN----VGNVNEAFGLCNQMRRMSVTPDLVVF 234 (622)
Q Consensus 164 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 234 (622)
+......+...|.. .+++++|...|+...+ .+..++..+...|.. .+++++|.+.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 67777778888887 8999999999988755 466788888889988 899999999999998865 56667
Q ss_pred HHHHHHHhc----cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHh----cCCHHHHHHHHhhcCC-CCHHHHHHHHH
Q 006997 235 LNLILGCAQ----VGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTK----CGDLELARRVFDAVLE-KSVFLWTSMIG 305 (622)
Q Consensus 235 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~ 305 (622)
..+...+.. .+++++|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .++.++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777 789999999999998876 56677888888887 7899999999988754 47788889999
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 006997 306 GYAQ----LGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAE----LGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMF 377 (622)
Q Consensus 306 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (622)
.|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|...++...+.+ ++..+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9988 899999999999998865 55667777777765 789999999999988765 456677788888
Q ss_pred Hh----cCChHHHHHHhccCCC-CChhHHHHHHHHHHHc-----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhcc
Q 006997 378 SK----CGRINKAKEVFERVPD-KDLAVWSAMINGYAIH-----GMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHS 447 (622)
Q Consensus 378 ~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 447 (622)
.. .+++++|.+.|++..+ .+...+..+...|... +++++|+..|++..+ .+ +...+..+...|...
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHS
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC---CHHHHHHHHHHHHhC
Confidence 87 8999999999998765 4566777788888887 899999999999988 43 455677777777765
Q ss_pred C---chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cC
Q 006997 448 G---MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR----AGRFDLALKTIHEMPVEVQAQVWAPLLSACMK----HH 516 (622)
Q Consensus 448 g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 516 (622)
| ++++|.++|++..+. .++..+..|...|.. .+++++|.+++++.....++..+..|...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 6 889999999998853 467788889999988 89999999999988744567788889999988 89
Q ss_pred CHHHHHHHHHHHHccCCC---CCchHHHHHHHHHhcCChHH--HHHHHHHh
Q 006997 517 NVELGEYAAKNLLTLNPG---STGNYILMANLFTSAGMWKE--AATARGLM 562 (622)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 562 (622)
|.++|...|+++++.+|+ ++.....++.++.+.....+ |.+++++.
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 999999999999999854 77777778777665332222 44555443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.3e-18 Score=167.48 Aligned_cols=263 Identities=13% Similarity=0.059 Sum_probs=229.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 006997 295 KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLI 374 (622)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 374 (622)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355667788888999999999999999998864 3345566677788899999999999999998876 55778889999
Q ss_pred HHHHhcC-ChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCc
Q 006997 375 HMFSKCG-RINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGM 449 (622)
Q Consensus 375 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 449 (622)
..+...| ++++|.+.|+++.. .+...|..+...+...|++++|.+.++++.+ ..|+ ...+..+...+...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ---LMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHhh
Confidence 9999999 99999999998764 3567899999999999999999999999998 4454 5677779999999999
Q ss_pred hHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----------CCcHHhHHHHHHHHHhcCC
Q 006997 450 VDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-V----------EVQAQVWAPLLSACMKHHN 517 (622)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~~~~~~~~~l~~~~~~~~~ 517 (622)
+++|...++++... .| +...+..+...+...|++++|...++++. . +.....+..++..+...|+
T Consensus 175 ~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 175 SKLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp HHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999843 44 57888999999999999999999998874 1 3346789999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 518 VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+++|...+++++++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 252 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999988763
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.4e-19 Score=174.56 Aligned_cols=279 Identities=12% Similarity=-0.013 Sum_probs=196.0
Q ss_pred cCCHHHHHH-HHhhcCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHH
Q 006997 279 CGDLELARR-VFDAVLEK-------SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSK 350 (622)
Q Consensus 279 ~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 350 (622)
.|++++|.+ .|++.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 55543211 12345555566666666666666666666543 2344555555566666666666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHH---------------HHHHHHHcC
Q 006997 351 GKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--K-DLAVWSA---------------MINGYAIHG 412 (622)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~ 412 (622)
|...++.+.+.. +.+..++..+..+|...|++++|.+.|+++.. | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 666666665554 33555566666666666666666666655432 1 1111110 133334889
Q ss_pred CHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006997 413 MGDQALNLFYKMQHVEGLKPD---AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 489 (622)
++++|...|+++.+ ..|+ ..++..+..++...|++++|+..++++... .+.+...+..++..|...|++++|
T Consensus 196 ~~~~A~~~~~~a~~---~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVR---LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHH---HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHH---hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998 4454 788999999999999999999999999865 133578899999999999999999
Q ss_pred HHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------CchHHHHHHHHHhcCChHHHH
Q 006997 490 LKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS-----------TGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 490 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 556 (622)
+..++++. .+.+...+..++.++...|++++|...+++++++.|++ +.+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999986 44557889999999999999999999999999998877 789999999999999999999
Q ss_pred HHHHHhhh
Q 006997 557 TARGLMDD 564 (622)
Q Consensus 557 ~~~~~~~~ 564 (622)
.++++..+
T Consensus 351 ~~~~~~l~ 358 (368)
T 1fch_A 351 AADARDLS 358 (368)
T ss_dssp HHHTTCHH
T ss_pred HhHHHHHH
Confidence 99885543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=5.2e-17 Score=166.94 Aligned_cols=396 Identities=11% Similarity=0.055 Sum_probs=292.0
Q ss_pred CCChhhHhHHHHHHHhcCChHHHHHHHhhcCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006997 162 NNEIPLANSVMSMYAKFGKVNEARSIFDEIGE--T-SIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLI 238 (622)
Q Consensus 162 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 238 (622)
|.+...|..++. +.+.|++++|..+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...|...+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 337788888888 4778999999999999876 3 4567999999999999999999999999875 46777666666
Q ss_pred HHH-hccCChHHHHH----HHHHHHHh-CCCC-CchhHHHHHHHHHh---------cCCHHHHHHHHhhcCCC-C---HH
Q 006997 239 LGC-AQVGNLFLALS----MHSLLLKS-GYNN-EDPLDNLLVSMYTK---------CGDLELARRVFDAVLEK-S---VF 298 (622)
Q Consensus 239 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~-~---~~ 298 (622)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++.... . ..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 34566666554 67766553 5443 55677777776654 68899999999987642 1 12
Q ss_pred HHHHHHHHH-------------HhcCChHHHHHHHHHH------HhCC---CCCCH--------HHHHHHHHHHhc----
Q 006997 299 LWTSMIGGY-------------AQLGYPSEAVNLFKRL------LKTS---VRPNE--------ATLATTLSACAE---- 344 (622)
Q Consensus 299 ~~~~l~~~~-------------~~~~~~~~a~~~~~~m------~~~~---~~~~~--------~~~~~ll~~~~~---- 344 (622)
.|....... ...+++..|..+++.+ .+.. ++|+. ..|...+.....
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 333322211 1235567777777653 2221 24431 334443332221
Q ss_pred cCCh----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCChH-------HHHHHhccCCC---C-ChhHHH
Q 006997 345 LGSL----SKGKEIEEYIVLNGLESNRQVQTSLIHMFSK-------CGRIN-------KAKEVFERVPD---K-DLAVWS 402 (622)
Q Consensus 345 ~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~ 402 (622)
.++. ..+..+|+++.... +.++.+|..++..+.+ .|+++ +|..+|++..+ | +...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 1232 36778888888764 5678888888888876 79987 89999998764 3 567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHH
Q 006997 403 AMINGYAIHGMGDQALNLFYKMQHVEGLKPDA--VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDL 479 (622)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 479 (622)
.++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|..+|++..+. .|+ ...+...+..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 999999999999999999999998 67763 47888888888999999999999999843 443 3444333322
Q ss_pred -HHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc----hHHHHHHHHHhcCCh
Q 006997 480 -LGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG----NYILMANLFTSAGMW 552 (622)
Q Consensus 480 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~ 552 (622)
+...|+.++|..+|++.. .+.++..|..++..+.+.|+.++|..+|+++++..|.++. .|...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 346899999999999876 3445788999999999999999999999999998877665 788888888999999
Q ss_pred HHHHHHHHHhhhCCC
Q 006997 553 KEAATARGLMDDRRL 567 (622)
Q Consensus 553 ~~A~~~~~~~~~~~~ 567 (622)
+.+..+++++.+..+
T Consensus 480 ~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 480 ASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCc
Confidence 999999999877543
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=3.5e-15 Score=158.54 Aligned_cols=418 Identities=12% Similarity=0.113 Sum_probs=307.4
Q ss_pred CcccHHHHHHHhhccCChhhHHHHHHHHHHhc--CCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHH
Q 006997 29 NSFTFPLVLKACANINSIWDGKRVHSHVLKVG--FQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIIS 106 (622)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~ 106 (622)
++.-.....++|...|.+.+|.++++.+...+ +..+....+.++....+. +..+..+...... ..+ ..-+..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--~~d---~~eIA~ 1057 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--NYD---APDIAN 1057 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--hcc---HHHHHH
Confidence 34445677788888999999999999988442 123445666677666665 4444444444433 122 344777
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhh-hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHH
Q 006997 107 AHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCS-FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEAR 185 (622)
Q Consensus 107 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 185 (622)
.+...|.+++|..+|++.. -.......++.... ++.|.++..++ .++.+|..+..++...|++++|.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 7888999999999999852 12223344554444 66666666644 27889999999999999999999
Q ss_pred HHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 006997 186 SIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNE 265 (622)
Q Consensus 186 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (622)
..|.+. .|...|..++.++.+.|++++|++.|...++.. +++...+.++.+|++.++++....+.. .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCC
Confidence 999775 677888999999999999999999999887754 444444468889999999886554431 445
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 006997 266 DPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAEL 345 (622)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 345 (622)
...+..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+..+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 566777999999999999999999985 58999999999999999999999976 3668899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC---ChhHHHHHHHHHHHc--CCHHHHHHH
Q 006997 346 GSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK---DLAVWSAMINGYAIH--GMGDQALNL 420 (622)
Q Consensus 346 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~--~~~~~a~~~ 420 (622)
|++..|...... +..++..+..++..|.+.|.+++|..+++....- ....|+-+...|++. ++..++++.
T Consensus 1264 ~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999888876653 3445667778999999999999999999877643 334666666666654 344555555
Q ss_pred HHHhHHhcCCCC------CHHHHHHHHHHHhccCchHHHHHHH-------------HHhHHhcCCCCChhHHHHHHHHHH
Q 006997 421 FYKMQHVEGLKP------DAVVYTSILSACSHSGMVDDGLSFF-------------KSMQSNFGIEPSIEHYLCLVDLLG 481 (622)
Q Consensus 421 ~~~~~~~~~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~-------------~~~~~~~~~~p~~~~~~~l~~~~~ 481 (622)
|..-.. ++| +...|.-+...|.+.|+++.|.... .... .-..+++.|...+.-|.
T Consensus 1339 f~~rin---i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i---~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1339 FWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHhcc---cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh---cccccHHHHHHHHHHHH
Confidence 554332 444 3567888888999999999988322 2222 12446778877777777
Q ss_pred hcC---------------ChHHHHHHHHhCC
Q 006997 482 RAG---------------RFDLALKTIHEMP 497 (622)
Q Consensus 482 ~~g---------------~~~~A~~~~~~~~ 497 (622)
... +.+.+.++|.+..
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence 666 7788888887553
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=1.5e-16 Score=161.77 Aligned_cols=352 Identities=10% Similarity=-0.002 Sum_probs=298.8
Q ss_pred CCcchHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCC
Q 006997 194 TSIVSWTTIIGGYVN----VGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ----VGNLFLALSMHSLLLKSGYNNE 265 (622)
Q Consensus 194 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 265 (622)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466777888888888 899999999999998864 56777788888888 899999999999998875 5
Q ss_pred chhHHHHHHHHHh----cCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHH
Q 006997 266 DPLDNLLVSMYTK----CGDLELARRVFDAVLEK-SVFLWTSMIGGYAQ----LGYPSEAVNLFKRLLKTSVRPNEATLA 336 (622)
Q Consensus 266 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~ 336 (622)
...+..|...|.. .+++++|...|++..+. ++.++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677788888988 88999999999987544 67888889998987 789999999999999875 677777
Q ss_pred HHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHhccCCC-CChhHHHHHHHH
Q 006997 337 TTLSACAE----LGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK----CGRINKAKEVFERVPD-KDLAVWSAMING 407 (622)
Q Consensus 337 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~ 407 (622)
.+...|.. .++.++|...++...+.+ ++..+..+..+|.. .+++++|.+.|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877 899999999999998865 56677888888886 7899999999998764 466677777788
Q ss_pred HHH----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhcc-----CchHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006997 408 YAI----HGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHS-----GMVDDGLSFFKSMQSNFGIEPSIEHYLCLVD 478 (622)
Q Consensus 408 ~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 478 (622)
|.. .+++++|++.|++..+ .+ +...+..+...|... +++++|...|++..+. .+...+..+..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~-~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAE-QG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 887 8999999999999987 43 456677777787776 8999999999998854 35567788888
Q ss_pred HHHhcC---ChHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh---
Q 006997 479 LLGRAG---RFDLALKTIHEMPVEVQAQVWAPLLSACMK----HHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS--- 548 (622)
Q Consensus 479 ~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 548 (622)
.|...| ++++|++++++.....++..+..|...|.. .+++++|...++++.+.. ++.++..++.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888866 789999999998745678889999999988 899999999999999864 58899999999999
Q ss_pred -cCChHHHHHHHHHhhhCCC
Q 006997 549 -AGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 549 -~g~~~~A~~~~~~~~~~~~ 567 (622)
.+++++|...|++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998764
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=3.9e-19 Score=169.15 Aligned_cols=347 Identities=14% Similarity=0.115 Sum_probs=163.6
Q ss_pred HhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 006997 176 AKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHS 255 (622)
Q Consensus 176 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 255 (622)
.+.|++++|.++++++..| ..|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999999665 4999999999999999999999975 3678899999999999999999999888
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 006997 256 LLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATL 335 (622)
Q Consensus 256 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 335 (622)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.++..|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45578899999999999999999988864 67789999999999999999999999977 378
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHH
Q 006997 336 ATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGD 415 (622)
Q Consensus 336 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 415 (622)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999988 378899999999999999999988887765 44444556889999999999
Q ss_pred HHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhc--cCchHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHHHhcCCh
Q 006997 416 QALNLFYKMQHVEGLKPD-AVVYTSILSACSH--SGMVDDGLSFFKSMQSNFGIEP------SIEHYLCLVDLLGRAGRF 486 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~ 486 (622)
+|..+++.... ..+. ...|+.+.-+|++ .++..+.++.|. ++-+++| +...|..++-.|...+++
T Consensus 225 Eai~lLe~aL~---le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 225 ELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHTT---STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhC---CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999999876 4443 4455555555554 445555555554 3335555 467789999999999999
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHh
Q 006997 487 DLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLM 562 (622)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 562 (622)
+.|...+-+-+ |+.--...+.....+-.+.+--.+...--++-. |.....|..++...=+.+.+.+.|++.
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 99988776653 222122223333444444443333333333222 234444555554444555555554433
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.9e-17 Score=154.91 Aligned_cols=271 Identities=11% Similarity=-0.018 Sum_probs=220.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChH
Q 006997 274 SMYTKCGDLELARRVFDAVLEKSV----FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLS 349 (622)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 349 (622)
+-....|+++.|+..++.....++ .....+..+|...|+++.|+..++.. -.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 345667999999999988765543 34456788999999999999877542 3567778888889999999999
Q ss_pred HHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 006997 350 KGKEIEEYIVLNGL-ESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVE 428 (622)
Q Consensus 350 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (622)
.|.+.++.+...+. |.++..+..+..++...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD-- 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 99999999988764 55677788888999999999999999999 56778899999999999999999999999998
Q ss_pred CCCCCHHHH---HHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHH
Q 006997 429 GLKPDAVVY---TSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQ 503 (622)
Q Consensus 429 ~~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 503 (622)
..|+.... ..++..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|...++++. .+.++.
T Consensus 159 -~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 159 -QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp -HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred -hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 45764321 22334455679999999999999976 35578889999999999999999999999976 445678
Q ss_pred hHHHHHHHHHhcCCHHH-HHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 006997 504 VWAPLLSACMKHHNVEL-GEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 559 (622)
++..++..+...|+.++ +.++++++++++|+++.+. +...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 89999999999999865 6789999999999887654 4566677777776554
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=3e-17 Score=166.52 Aligned_cols=382 Identities=11% Similarity=-0.004 Sum_probs=228.8
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCC------------CCcchHHHHHHHHHcCCChhHHHHHHHHHHHC-----C
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGE------------TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRM-----S 226 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 226 (622)
....|+.|...+...|+.++|++.|++..+ ....+|+.+..+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788899999999999999998876521 23467888888888889999888888876542 1
Q ss_pred -CCC-CHhHHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH---HhcCCHHHHHHHHhhcC---CCC
Q 006997 227 -VTP-DLVVFLNLILGCAQ--VGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMY---TKCGDLELARRVFDAVL---EKS 296 (622)
Q Consensus 227 -~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~---~~~ 296 (622)
..+ ...++.....++.. .+++++|...|++.++.. |.++..+..+..++ ...++.++|++.+++.. ..+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 111 23445544444433 346778888888777764 34444454444442 34455566666665542 234
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHH
Q 006997 297 VFLWTSMIGGYAQ----LGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTS 372 (622)
Q Consensus 297 ~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 372 (622)
..++..+...+.. .++.++|.+.+++..... +.+...+..+...+...|+++.|...++.+.+.. |.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4555555444433 345667777777766643 3345566667777777777777777777776654 345555555
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchH
Q 006997 373 LIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVD 451 (622)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 451 (622)
+..+|...+....+ ... ..........+..++|...+++..+ ..|+ ..++..+...+...|+++
T Consensus 287 lg~~y~~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 287 IGCCYRAKVFQVMN-----LRE-------NGMYGKRKLLELIGHAVAHLKKADE---ANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHH-----C-------------CHHHHHHHHHHHHHHHHHHHH---HCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhhh-----HHH-------HHHHHHHHHHhhHHHHHHHHHHHhh---cCCchhhhhhhHHHHHHHhccHH
Confidence 55555432111111 000 0000011122346788888988887 4554 467888899999999999
Q ss_pred HHHHHHHHhHHhcCCCCChh----HHHHHHHH-HHhcCChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 006997 452 DGLSFFKSMQSNFGIEPSIE----HYLCLVDL-LGRAGRFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVELGEYAA 525 (622)
Q Consensus 452 ~a~~~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 525 (622)
+|+..|+++.+. .|+.. .+..+... +...|++++|+..+++.. ..|+...+.. ....+..++
T Consensus 352 ~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHH
Confidence 999999998854 44432 23333332 356789999999998876 5665433322 234566788
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceE
Q 006997 526 KNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQ 575 (622)
Q Consensus 526 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 575 (622)
++.++.+|+++.++..+|.+|...|++++|++.|++.++.+.....+.+|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 89999999999999999999999999999999999999876544444444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=1.2e-18 Score=170.46 Aligned_cols=260 Identities=10% Similarity=-0.057 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006997 297 VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHM 376 (622)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (622)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667777777777777777777777653 3356667777777777777777777777777665 4456677777777
Q ss_pred HHhcCChHHHHHHhccCCCCC-------------hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC---CHHHHHHH
Q 006997 377 FSKCGRINKAKEVFERVPDKD-------------LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP---DAVVYTSI 440 (622)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l 440 (622)
|...|++++|...|+++.+.+ ...+..+...+...|++++|+..++++.+ ..| +..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH---QNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH---HSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH---hCcCccCHHHHHHH
Confidence 777777777777777665311 12334457788899999999999999998 344 57889999
Q ss_pred HHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCH
Q 006997 441 LSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNV 518 (622)
Q Consensus 441 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 518 (622)
...+...|++++|+..|+++.+. .+.+...+..+..+|...|++++|+..++++. .+.+..+|..++.++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999865 13468889999999999999999999999886 344588899999999999999
Q ss_pred HHHHHHHHHHHccCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 519 ELGEYAAKNLLTLNPG------------STGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
++|...+++++++.|+ +..++..++.++...|+.+.|..+.++-.
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 9999999999998876 36789999999999999999998887543
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.9e-17 Score=156.43 Aligned_cols=294 Identities=13% Similarity=0.023 Sum_probs=135.7
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCC
Q 006997 169 NSVMSMYAKFGKVNEARSIFDEIGE--TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGN 246 (622)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 246 (622)
..++..+...|++++|.++++...+ ++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.
T Consensus 65 ~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 65 MEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp --------------------------------------------CHHHHTTTTT-------CC----------------C
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC
Confidence 3344444444444554444443332 223344444455555555554444442 2444455555555555555
Q ss_pred hHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006997 247 LFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT 326 (622)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 326 (622)
++.|..+|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+
T Consensus 138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--- 203 (449)
T 1b89_A 138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHI--- 203 (449)
T ss_dssp TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---
T ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHH---
Confidence 55555555543 34666777777777777777777766 36677777777777777777775544432
Q ss_pred CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc--CChHHHHHHhccCCC--------C
Q 006997 327 SVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKC--GRINKAKEVFERVPD--------K 396 (622)
Q Consensus 327 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~ 396 (622)
...+.....++..|.+.|.++++..+++...... +-...+|+-|..+|++- +++.+..+.|..-.. .
T Consensus 204 --~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 204 --VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred --HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 2233334456677777777777777777776554 45566677776666653 345555555554332 2
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHH
Q 006997 397 DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCL 476 (622)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 476 (622)
+...|..+...|...++++.|... |.+ .+|+...-..+.....+..+.+--.+...-.... .| ...+.|
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t---m~~---h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~---~p--~~l~~l 349 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT---MMN---HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDL 349 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH---HHH---STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH---HHh---CChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc---CH--HHHHHH
Confidence 456788899999999999988763 444 3344333333334444444443322222222211 23 234555
Q ss_pred HHHHHhcCChHHHHHHHHhCC
Q 006997 477 VDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~ 497 (622)
..++...=+...+.++|++..
T Consensus 350 l~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 350 LMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHhccCcHHHHHHHHHcC
Confidence 555555555555555555543
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.2e-15 Score=156.78 Aligned_cols=404 Identities=11% Similarity=0.084 Sum_probs=224.4
Q ss_pred CcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHH
Q 006997 29 NSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAH 108 (622)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 108 (622)
+...|..++.. ...|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|++.....|++..|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45567777774 66788888999998888764 55677888888888888999999999988877666777777776533
Q ss_pred -HhCCCchHHHH----HHHHHHHc-CCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHh-----
Q 006997 109 -SRACLNDEAIL----VLKEMWVL-GLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAK----- 177 (622)
Q Consensus 109 -~~~~~~~~A~~----~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 177 (622)
...|+.++|.+ +|+..... |..|+ +...|...+....+
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~-------------------------------~~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIM-------------------------------SYQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTT-------------------------------CHHHHHHHHHHHHHSCCCS
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcc-------------------------------cHHHHHHHHHHHhcCCCcc
Confidence 35677777665 55544432 33332 34444444444433
Q ss_pred ----cCChHHHHHHHhhcCC-CCc---chHHHHHHHH-------------HcCCChhHHHHHHHHHH------HCC---C
Q 006997 178 ----FGKVNEARSIFDEIGE-TSI---VSWTTIIGGY-------------VNVGNVNEAFGLCNQMR------RMS---V 227 (622)
Q Consensus 178 ----~g~~~~A~~~~~~~~~-~~~---~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~~---~ 227 (622)
.|+++.|..+|++... |.. ..|....... .+.+++..|..++.++. +.. +
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 6778888888887765 221 1222211110 01223344444433311 110 1
Q ss_pred CCCHh-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc----CCH----HHHHHHHhhcCC---C
Q 006997 228 TPDLV-VFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKC----GDL----ELARRVFDAVLE---K 295 (622)
Q Consensus 228 ~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~---~ 295 (622)
+|+.. .+.. . ...|...+...... ++. ..+..+|++... .
T Consensus 219 ~p~~~~~~~~-------------~---------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~ 270 (530)
T 2ooe_A 219 PPQNTPQEAQ-------------Q---------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH 270 (530)
T ss_dssp CCC--CCHHH-------------H---------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCChhHHH-------------H---------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC
Confidence 22210 0000 0 11222222211111 111 234444444321 2
Q ss_pred CHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 006997 296 SVFLWTSMIGGYAQ-------LGYPS-------EAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLN 361 (622)
Q Consensus 296 ~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 361 (622)
++..|..++..+.. .|+++ +|..+|++..+.-.+-+...+..++..+...|+++.|..+++.+.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 44555555555443 45554 56666666554211223445555555555666666666666666553
Q ss_pred CCCCch-hHHHHHHHHHHhcCChHHHHHHhccCCCCC---hhHHHHHHH-HHHHcCCHHHHHHHHHHhHHhcCCCCC-HH
Q 006997 362 GLESNR-QVQTSLIHMFSKCGRINKAKEVFERVPDKD---LAVWSAMIN-GYAIHGMGDQALNLFYKMQHVEGLKPD-AV 435 (622)
Q Consensus 362 ~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 435 (622)
. +.+. .+|..++..+.+.|++++|.++|++..+.. ...|...+. .+...|+.++|..+|++..+ ..|+ ..
T Consensus 351 ~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---~~p~~~~ 426 (530)
T 2ooe_A 351 E-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYGDIPE 426 (530)
T ss_dssp S-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHTTCHH
T ss_pred c-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH---HCCCCHH
Confidence 2 1122 355556666666666666666666554321 112221111 12357788888888888776 3453 56
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS--IEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
.+..++..+.+.|+.++|..+|+++.......|+ ...|...+......|+.+.+.++.+++.
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777788888888888888887754222332 3467777777777888888888877764
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=5.7e-18 Score=165.77 Aligned_cols=276 Identities=12% Similarity=0.056 Sum_probs=205.7
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhCCC-CC--CHHHHHHHHHHHhccCChHHHHHHH
Q 006997 280 GDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVN-LFKRLLKTSV-RP--NEATLATTLSACAELGSLSKGKEIE 355 (622)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 355 (622)
+.++.+...|+.+...+.. .+...|++++|+. .|++...... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3444444555554433322 3445688999998 8887654321 11 3456778888999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC
Q 006997 356 EYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP 432 (622)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p 432 (622)
+.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..++..+...|...|++++|.+.++++.+ ..|
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 163 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR---YTP 163 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TST
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCc
Confidence 9999876 56788899999999999999999999997763 4677899999999999999999999999998 555
Q ss_pred CHH-HHHH---------------HHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 433 DAV-VYTS---------------ILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 433 ~~~-~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
+.. .+.. .+..+...|++++|...++++.....-.++..++..+...|.+.|++++|+..++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 2211 233344889999999999999865221124788999999999999999999999998
Q ss_pred C--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 497 P--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 497 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
. .+.+...|..++..+...|++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6 445578899999999999999999999999999999999999999999999999999999999998743
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.8e-17 Score=159.22 Aligned_cols=273 Identities=12% Similarity=-0.005 Sum_probs=191.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006997 267 PLDNLLVSMYTKCGDLELARRVFDAVL---EKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACA 343 (622)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 343 (622)
..+..+...+...|++++|..+|+++. ..+..++..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 344555566666666666666666553 2245566666666666666666666666666542 224455555666666
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHH-HH-HHHHcCCHHHHHHHH
Q 006997 344 ELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAM-IN-GYAIHGMGDQALNLF 421 (622)
Q Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~ 421 (622)
..|++++|...++.+.+.. +.+...+..+.... ++......+ .. .+...|++++|.+.+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 6666666666666665543 11122211111000 000011111 22 366778899999999
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 006997 422 YKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--V 498 (622)
Q Consensus 422 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 498 (622)
+++.+ ..| +...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|.+.++++. .
T Consensus 162 ~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 162 HAALE---MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHh---hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99987 444 5678889999999999999999999999865 13357888999999999999999999999876 3
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 499 EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG------------STGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+.+...|..++..+...|++++|...++++++..|+ ++.++..++.++.+.|++++|..++++..+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455788999999999999999999999999999998 688999999999999999999999986654
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=3.1e-17 Score=153.53 Aligned_cols=248 Identities=13% Similarity=0.053 Sum_probs=203.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 006997 304 IGGYAQLGYPSEAVNLFKRLLKTSVRPNE--ATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCG 381 (622)
Q Consensus 304 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 381 (622)
++-....|++..|+..+++.... .|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34566789999999998876543 3443 3446678899999999999876644 23567788889999999999
Q ss_pred ChHHHHHHhccCC----CC-ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHH
Q 006997 382 RINKAKEVFERVP----DK-DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSF 456 (622)
Q Consensus 382 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 456 (622)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999864 24 455677778899999999999999876 35677889999999999999999999
Q ss_pred HHHhHHhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006997 457 FKSMQSNFGIEPSIEHY---LCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 457 ~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 531 (622)
++++.+. .|+.... ..++..+...|++++|..+|+++. .+.+...|+.++.++.+.|++++|+..+++++++
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999865 4654321 234455556699999999999987 5667889999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHH-HHHHHHHhhhCCC
Q 006997 532 NPGSTGNYILMANLFTSAGMWKE-AATARGLMDDRRL 567 (622)
Q Consensus 532 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 567 (622)
+|+++.++..++.++...|+.++ +.++++++.+.++
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999987 5789998887443
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=1.8e-17 Score=162.06 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHH
Q 006997 331 NEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMING 407 (622)
Q Consensus 331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 407 (622)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34557888889999999999999999999876 56788999999999999999999999998763 457789999999
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCCCHH-----------HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKPDAV-----------VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCL 476 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~-----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 476 (622)
|...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|+..++++.....-.++...+..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK---QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH---hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988 455422 22345778999999999999999999762222268899999
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006997 477 VDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKE 554 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (622)
...|.+.|++++|++.++++. .+.+..+|..++.++...|++++|+..+++++++.|+++.++..++.+|.+.|++++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999986 455688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCC
Q 006997 555 AATARGLMDDRR 566 (622)
Q Consensus 555 A~~~~~~~~~~~ 566 (622)
|.+.|+++.+..
T Consensus 300 A~~~~~~al~~~ 311 (365)
T 4eqf_A 300 AVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998743
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.9e-16 Score=158.38 Aligned_cols=390 Identities=11% Similarity=-0.036 Sum_probs=238.1
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHH
Q 006997 95 LRSVVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSM 174 (622)
Q Consensus 95 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (622)
......||.|...+...|++++|++.|++..+. ..........+....+|+.+..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~------------------------~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEEL------------------------IQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHSGGGCTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------------------HHhcCccccchHHHHHHHHHHHH
Confidence 344677999999999999999999999887541 00000001122245677889999
Q ss_pred HHhcCChHHHHHHHhhcCC----------C-CcchHHHHHHHHHc--CCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHH
Q 006997 175 YAKFGKVNEARSIFDEIGE----------T-SIVSWTTIIGGYVN--VGNVNEAFGLCNQMRRMSVTPD-LVVFLNLILG 240 (622)
Q Consensus 175 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~ 240 (622)
|...|++++|...+++..+ + ...+++.+..++.+ .+++++|++.|++..+. .|+ ...+..+...
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIA 181 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999998876532 1 22456655555554 45799999999998875 454 3344444433
Q ss_pred ---HhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHh----cCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhc
Q 006997 241 ---CAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTK----CGDLELARRVFDAVL---EKSVFLWTSMIGGYAQL 310 (622)
Q Consensus 241 ---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 310 (622)
+...++.++|.+.+++.++.. +.+..++..+...+.. .++.++|.+.+++.. ..+..++..+...|...
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc
Confidence 445677888999999888875 5566666666655554 457788999988763 34678899999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 006997 311 GYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVF 390 (622)
Q Consensus 311 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 390 (622)
|++++|+..|++..+.. +-+..++..+...|...+.... ... . ..........+.++.|...|
T Consensus 261 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998863 2244555555544432211110 000 0 00001111122356666666
Q ss_pred ccCC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHHHH-HHhccCchHHHHHHHHHhHH
Q 006997 391 ERVP---DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV----VYTSILS-ACSHSGMVDDGLSFFKSMQS 462 (622)
Q Consensus 391 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~ll~-~~~~~g~~~~a~~~~~~~~~ 462 (622)
++.. ..+..++..+...|...|++++|+..|++..+ ..|+.. .+..+.. .....|+.++|+..|++..+
T Consensus 324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6554 23556788889999999999999999999988 445432 2233332 34578999999999999884
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 463 NFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 463 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
+.|+........ ..+.+++++.. .+.+..+|..++.++...|++++|++.|++++++.|.+|.+..
T Consensus 401 ---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 401 ---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp ---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred ---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 466643332222 23334444433 3556788999999999999999999999999999998888776
Q ss_pred HHH
Q 006997 541 LMA 543 (622)
Q Consensus 541 ~l~ 543 (622)
-+|
T Consensus 469 ~~G 471 (472)
T 4g1t_A 469 WNG 471 (472)
T ss_dssp ---
T ss_pred cCC
Confidence 655
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.8e-16 Score=141.72 Aligned_cols=193 Identities=18% Similarity=0.114 Sum_probs=155.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHH
Q 006997 364 ESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTS 439 (622)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 439 (622)
|+++..+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..|++..+ ..|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA---RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHH
Confidence 55667777888888888888888888887654 3566788888899999999999999999988 6675 567888
Q ss_pred HHHHHhcc-----------CchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhH
Q 006997 440 ILSACSHS-----------GMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVW 505 (622)
Q Consensus 440 ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 505 (622)
+..++... |++++|+..+++..+. .| +...+..+..+|...|++++|+..++++. . .++..+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHH
Confidence 88889888 9999999999999864 56 57888899999999999999999999886 4 778889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
..++.++...|++++|+..++++++++|+++.++..++.++.+.|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998654
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=3.3e-15 Score=143.37 Aligned_cols=227 Identities=11% Similarity=0.052 Sum_probs=117.9
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMY 276 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 276 (622)
..|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~------------ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PK------------ 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cC------------
Confidence 345555666666666666666666665532 2234444444555555555555555555544432 22
Q ss_pred HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-H
Q 006997 277 TKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATT--------------LS-A 341 (622)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------l~-~ 341 (622)
+..++..+...+...|++++|...++++.+.... +...+..+ .. .
T Consensus 88 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 88 -------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFF 147 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CC
T ss_pred -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 3445555666666666666666666666654211 11111111 11 2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHH
Q 006997 342 CAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQAL 418 (622)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 418 (622)
+...|++++|...++.+.+.. +.+..++..+...|...|++++|.+.++++.+ .+...|..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 556667777777777766654 33455555555555555555555555554431 23344555555555555555555
Q ss_pred HHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhH
Q 006997 419 NLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQ 461 (622)
Q Consensus 419 ~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 461 (622)
..++++.+ ..|+ ..++..+..++...|++++|.+.++++.
T Consensus 227 ~~~~~a~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 227 DAYNRALD---INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55555554 2232 3445555555555555555555555554
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.2e-16 Score=142.83 Aligned_cols=226 Identities=13% Similarity=0.035 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CchhHHHHHHH
Q 006997 298 FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLE--SNRQVQTSLIH 375 (622)
Q Consensus 298 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 375 (622)
..|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++.+.+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 345555666666666666666666665554 45555555555555566666665555555432100 0000
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHH
Q 006997 376 MFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
.....|..+...+...|++++|...|+++.+ ..|+. ..+...|++++|..
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLT---EHRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCH-------HHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh---cCchh-------HHHHHHhHHHHHHH
Confidence 0035666777788888888888888888887 55663 34556678888999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 456 FFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 456 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
.++++... .| +...+..+...+...|++++|+..++++. .+.+...|..++..+...|++++|+..++++++.+
T Consensus 127 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 98888743 44 46677788888999999999999998876 44557788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 533 PGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988764
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-15 Score=140.14 Aligned_cols=235 Identities=11% Similarity=0.027 Sum_probs=181.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 006997 266 DPLDNLLVSMYTKCGDLELARRVFDAVLE--KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSV--RPN----EATLAT 337 (622)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~ 337 (622)
...+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|+..+++..+... .++ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999987632 6788999999999999999999999999887431 112 466777
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHH
Q 006997 338 TLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQA 417 (622)
Q Consensus 338 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 417 (622)
+...+...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 7777788888888888887776643 221 234455677778
Q ss_pred HHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 418 LNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 418 ~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
...++++.. ..|+ ...+..+...+...|++++|...++++... .+.+...+..+...|.+.|++++|+..++++
T Consensus 125 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888887776 5554 456777777888888888888888888754 1335777888888888888888888888887
Q ss_pred C--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC------CCCCchHHHHHHH
Q 006997 497 P--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLN------PGSTGNYILMANL 545 (622)
Q Consensus 497 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 545 (622)
. .+.+...|..++.++...|++++|...+++++++. |++..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 6 34457788889999999999999999999999988 7777666666544
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.68 E-value=4.1e-15 Score=138.79 Aligned_cols=241 Identities=8% Similarity=-0.043 Sum_probs=180.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 006997 309 QLGYPSEAVNLFKRLLKTSVRP---NEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINK 385 (622)
Q Consensus 309 ~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (622)
..|++++|+..|+++.+..... +...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3466777777777777653211 34456666777777777777777777777665 4466777778888888888888
Q ss_pred HHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHH
Q 006997 386 AKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQS 462 (622)
Q Consensus 386 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 462 (622)
|...|+++.+ .+...+..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888877653 3567888888899999999999999999988 567655555555566777999999999988876
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 463 NFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 463 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
. .+++...+ .++..+...++.++|.+.++++. ..|. ...|..++..+...|++++|...++++++++|++.
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 5 23344444 47777888888999999998876 2232 56788899999999999999999999999999765
Q ss_pred chHHHHHHHHHhcCChHHHHHHH
Q 006997 537 GNYILMANLFTSAGMWKEAATAR 559 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~ 559 (622)
.. .+.++...|++++|++.+
T Consensus 250 ~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHhhHHHH
Confidence 44 477888999999998876
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.7e-14 Score=144.15 Aligned_cols=376 Identities=11% Similarity=0.020 Sum_probs=204.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCCh--
Q 006997 104 IISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKV-- 181 (622)
Q Consensus 104 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 181 (622)
+...+.+.|++++|+++|++..+.| +...+..|..+|...|+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-----------------------------------~~~A~~~Lg~~y~~~g~~~d 53 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-----------------------------------YSEAQVGLADIQVGTRDPAQ 53 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----------------------------------CCTGGGTCC-----------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHHccCCCCC
Confidence 4556667788888888888776644 333444555566666777
Q ss_pred -HHHHHHHhhcCCCCcchHHHHHHHHHcCC-----ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChH---HHHH
Q 006997 182 -NEARSIFDEIGETSIVSWTTIIGGYVNVG-----NVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLF---LALS 252 (622)
Q Consensus 182 -~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~ 252 (622)
++|..+|++..+.+..++..+...+...+ ++++|+..|++..+.|... .+..+...|...+..+ .+.+
T Consensus 54 ~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 54 IKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp -----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHH
Confidence 78888888777666667777777555554 6678888888877765322 4444555554443322 2333
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcC----CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHh
Q 006997 253 MHSLLLKSGYNNEDPLDNLLVSMYTKCG----DLELARRVFDAVLEKSVFLWTSMIGGYAQLG---YPSEAVNLFKRLLK 325 (622)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~ 325 (622)
.+......| +......|...|...+ +.+.+..+++.....++.++..|...|...| +.++|+..|++..+
T Consensus 131 ~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~ 207 (452)
T 3e4b_A 131 QISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS 207 (452)
T ss_dssp HHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 333333333 2334444555555555 3344444455555555555555555555555 55556666555555
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHH
Q 006997 326 TSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMI 405 (622)
Q Consensus 326 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 405 (622)
.| .++...+..+...|.... ...+++++|.+.|++....++..+..+.
T Consensus 208 ~g-~~~a~~~~~Lg~~y~~g~-------------------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg 255 (452)
T 3e4b_A 208 RG-TVTAQRVDSVARVLGDAT-------------------------------LGTPDEKTAQALLEKIAPGYPASWVSLA 255 (452)
T ss_dssp TT-CSCHHHHHHHHHHHTCGG-------------------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhCCC-------------------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 54 223333233333332220 0003444555555444422333444444
Q ss_pred HH-H--HHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccC-----chHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006997 406 NG-Y--AIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSG-----MVDDGLSFFKSMQSNFGIEPSIEHYLCLV 477 (622)
Q Consensus 406 ~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 477 (622)
.. + ...+++++|++.|++..+ .| +...+..+...|. .| ++++|...|++.. .-++.....|.
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg 325 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLG 325 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHH
Confidence 44 2 346788888888888776 44 4556666666666 44 8888888888765 33566677777
Q ss_pred HHHHh----cCChHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHHHH--H
Q 006997 478 DLLGR----AGRFDLALKTIHEMPVEVQAQVWAPLLSACMK----HHNVELGEYAAKNLLTLNPGSTGNYILMANLF--T 547 (622)
Q Consensus 478 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~ 547 (622)
..|.. ..++++|..+|++.....+......|...|.. ..|.++|...++++.+..+. .....+..+. .
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPL 403 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTC
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhC
Confidence 77766 34888899888887645556667777777764 46899999999999887653 3444444443 3
Q ss_pred hcCChHHHHHHHHHhhh
Q 006997 548 SAGMWKEAATARGLMDD 564 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~ 564 (622)
..++..+|..+.++-.+
T Consensus 404 ~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 404 TPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34567777777776554
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1.1e-14 Score=135.71 Aligned_cols=241 Identities=12% Similarity=0.011 Sum_probs=135.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhc
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESN--RQVQTSLIHMFSKC 380 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 380 (622)
....+...|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+....++ ...+..+...|...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 33444455555555555555544321 1222444444455555555555555555544211111 12244555555555
Q ss_pred CChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHH
Q 006997 381 GRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSF 456 (622)
Q Consensus 381 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 456 (622)
|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+...+...+++++|...
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554432 2344566666666666666666666666665 3443 34455555233333477777777
Q ss_pred HHHhHHhcCCCC-ChhHHHHHHHHHHhcCC---hHHHHHHHHhCC----CCCc------HHhHHHHHHHHHhcCCHHHHH
Q 006997 457 FKSMQSNFGIEP-SIEHYLCLVDLLGRAGR---FDLALKTIHEMP----VEVQ------AQVWAPLLSACMKHHNVELGE 522 (622)
Q Consensus 457 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~~~~~~a~ 522 (622)
|+++.+. .| +...+..+..++...|+ +++|...++++. ..|+ ..++..++..+...|++++|.
T Consensus 165 ~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 165 FVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7776643 33 35555566666666666 666666666553 1133 246777888899999999999
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006997 523 YAAKNLLTLNPGSTGNYILMANLFTSAG 550 (622)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (622)
..++++++++|+++.++..+..+....+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999988888877765544
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=162.73 Aligned_cols=126 Identities=10% Similarity=0.081 Sum_probs=112.7
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcC-------CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIG-------ETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLN 236 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 236 (622)
-..+|++||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34578999999999999999999997753 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 006997 237 LILGCAQVGNL-FLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVF 289 (622)
Q Consensus 237 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 289 (622)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++.+.++.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 99999999985 789999999999999999999999988777665444444443
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=1e-13 Score=138.48 Aligned_cols=342 Identities=10% Similarity=0.027 Sum_probs=165.8
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCCh---hHHHHHhccCCCCCCCcchHHHHHHHHHhCC
Q 006997 36 VLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDF---VSSRKVLDEMPVRLRSVVSWNSIISAHSRAC 112 (622)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~ 112 (622)
+...+.+.|++++|.+.++...+.| +...+..|...|...|+. ++|...|+.... .++.++..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~--~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD--TSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh--CCHHHHHHHHHHHHhCC
Confidence 4566677889999999999998876 445556677777778888 899999998874 37778888887666655
Q ss_pred -----CchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHH---H
Q 006997 113 -----LNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNE---A 184 (622)
Q Consensus 113 -----~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A 184 (622)
++++|+..|++..+.| +...+..|...|...+.... +
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g-----------------------------------~~~A~~~Lg~~y~~~~~~~~~~~a 128 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANG-----------------------------------EGNTLIPLAMLYLQYPHSFPNVNA 128 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTT-----------------------------------CSSCHHHHHHHHHHCGGGCTTCCH
T ss_pred CCCCcCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHHhCCCCCCCHHH
Confidence 6789999999888755 22233444555544443222 2
Q ss_pred HHHHhhcCC-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC---ChHHHHHHHHHHHHh
Q 006997 185 RSIFDEIGE-TSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVG---NLFLALSMHSLLLKS 260 (622)
Q Consensus 185 ~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 260 (622)
.+.+..... .+..++..+...|...+.++++......+.+.-...+...+..+...+...| +.++|...|+...+.
T Consensus 129 ~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 129 QQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 222222221 3445555666666666655544444333322211222335555555666666 666666666666666
Q ss_pred CCCCCchhHHHHHHHHHhc----CCHHHHHHHHhhcCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHH
Q 006997 261 GYNNEDPLDNLLVSMYTKC----GDLELARRVFDAVLEKSVFLWTSMIGG-Y--AQLGYPSEAVNLFKRLLKTSVRPNEA 333 (622)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~ 333 (622)
| +++...+..|...|... +++++|...|++....++.++..|... + ...+++++|+..|++..+.| +..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 5 44444444455555443 466666666666552245555555554 2 34556666666666665544 333
Q ss_pred HHHHHHHHHhccC-----ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCChHHHHHHhccCCCC-ChhHHHH
Q 006997 334 TLATTLSACAELG-----SLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK----CGRINKAKEVFERVPDK-DLAVWSA 403 (622)
Q Consensus 334 ~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~ 403 (622)
.+..+...|. .| ++++|...|+... +.++.....|..+|.. ..++++|...|++..+. +......
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~ 359 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFA 359 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHH
Confidence 4444444443 23 5555555554444 2233444444444443 22444444444443321 2233333
Q ss_pred HHHHHHH----cCCHHHHHHHHHHhHH
Q 006997 404 MINGYAI----HGMGDQALNLFYKMQH 426 (622)
Q Consensus 404 l~~~~~~----~~~~~~a~~~~~~~~~ 426 (622)
+...|.. ..+..+|..+|+...+
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3333332 2244444444444443
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=1e-15 Score=157.54 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=94.7
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhc-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006997 266 DPLDNLLVSMYTKCGDLELARRVFDAV-------LEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATT 338 (622)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 338 (622)
..+|++||++|++.|++++|.++|++| ..||+++||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 346777777777777777777777554 3568888888888888888888888888888888888888888888
Q ss_pred HHHHhccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 006997 339 LSACAELGSL-SKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFE 391 (622)
Q Consensus 339 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (622)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 8888888774 6778888888888888888888888776666544444444433
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=3.5e-14 Score=132.18 Aligned_cols=227 Identities=8% Similarity=-0.060 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CChh----HHHHHHH
Q 006997 333 ATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KDLA----VWSAMIN 406 (622)
Q Consensus 333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~ 406 (622)
..+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|.+.|++..+ ++.. .|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999998876 45666888899999999999999999987764 2322 4888999
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAG 484 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 484 (622)
.+...|++++|++.|+++.+ ..|+ ...+..+..++...|++++|+..++++.+ ..| +...+..+...+...+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999998 5554 57899999999999999999999999884 355 5677777773444556
Q ss_pred ChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHccC---CCC-----CchHHHHHHHHHhcCC
Q 006997 485 RFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHN---VELGEYAAKNLLTLN---PGS-----TGNYILMANLFTSAGM 551 (622)
Q Consensus 485 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~ 551 (622)
++++|++.++++. .+.+...+..+..++...|+ +++|...+++++++. |+. ..++..++.+|...|+
T Consensus 157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999999987 34447788888888888888 888999999999865 432 2578899999999999
Q ss_pred hHHHHHHHHHhhhCC
Q 006997 552 WKEAATARGLMDDRR 566 (622)
Q Consensus 552 ~~~A~~~~~~~~~~~ 566 (622)
+++|.+.++++.+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998743
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=2.4e-13 Score=126.49 Aligned_cols=225 Identities=9% Similarity=-0.087 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHH
Q 006997 296 SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAE----LGSLSKGKEIEEYIVLNGLESNRQVQT 371 (622)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (622)
++.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...++...+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4455566666666666666666666666652 233444445555555 555555555555554443
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhc-
Q 006997 372 SLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAI----HGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSH- 446 (622)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~- 446 (622)
+...+..+...|.. .+++++|++.|++..+ .+ +...+..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHC
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcC
Confidence 33344445555555 6667777777777666 32 55666666666766
Q ss_pred ---cCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCcHHhHHHHHHHHHh----c
Q 006997 447 ---SGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR----AGRFDLALKTIHEMPVEVQAQVWAPLLSACMK----H 515 (622)
Q Consensus 447 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 515 (622)
.+++++|+..|++..+. + +...+..+...|.. .+++++|+..+++.....+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77777777777777643 2 45566666677766 77777777777776533445667777777777 7
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHhhhCCC
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGNYILMANLFTS----AGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (622)
+++++|...++++++..| +..+..++.+|.. .|++++|.+.|++..+.+.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888887765 6677888888888 8888888888887776543
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=8.4e-14 Score=134.56 Aligned_cols=245 Identities=11% Similarity=0.063 Sum_probs=198.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006997 297 VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGS-LSKGKEIEEYIVLNGLESNRQVQTSLIH 375 (622)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (622)
..+|+.+...+...|++++|+..|++.++.. +-+...|..+...+...|+ +++|...++.+.+.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4577888888889999999999999988864 2356677888888888896 999999999998876 557788888889
Q ss_pred HHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhc-cCch
Q 006997 376 MFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSH-SGMV 450 (622)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~-~g~~ 450 (622)
++.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++.+ +.|+ ...|..+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999988763 4667888888899999999999999999998 6675 6778888888888 5665
Q ss_pred HHH-----HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-cHHhHHHHHHHHHhcC-----
Q 006997 451 DDG-----LSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAG--RFDLALKTIHEMPVEV-QAQVWAPLLSACMKHH----- 516 (622)
Q Consensus 451 ~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~----- 516 (622)
++| +..+++++.. .| +...|..+..+|...| ++++|++.++++...| +...+..++..+.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5788888754 55 5778888888888888 6889999888875334 4667888888888764
Q ss_pred ---C-HHHHHHHHHHH-HccCCCCCchHHHHHHHHHhc
Q 006997 517 ---N-VELGEYAAKNL-LTLNPGSTGNYILMANLFTSA 549 (622)
Q Consensus 517 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 549 (622)
+ .++|+++++++ .+++|.....|..++..+..+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888888776554
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=4.7e-14 Score=122.55 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=146.6
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHH
Q 006997 397 DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLC 475 (622)
Q Consensus 397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 475 (622)
+...|..+...|...|++++|++.|++..+ +.|+ ..++..+..++.+.|++++|...+..+... .+.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK---ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHH
Confidence 556788899999999999999999999998 6675 678888999999999999999999998854 1335677778
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWK 553 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (622)
+...+...+++++|...+++.. .+.+...+..++..+...|++++|++.++++++++|+++.++..+|.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8889999999999999999876 45557789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCC
Q 006997 554 EAATARGLMDDRRL 567 (622)
Q Consensus 554 ~A~~~~~~~~~~~~ 567 (622)
+|.+.|++..+..+
T Consensus 159 ~A~~~~~~al~~~p 172 (184)
T 3vtx_A 159 EAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999987543
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=4.4e-14 Score=136.54 Aligned_cols=225 Identities=9% Similarity=0.047 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-hHHHHHHhccCCC---CChhHHHHHHHHH
Q 006997 333 ATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGR-INKAKEVFERVPD---KDLAVWSAMINGY 408 (622)
Q Consensus 333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 408 (622)
..|..+...+...|++++|...++.+++.. +.+..+++.+..++...|+ +++|+..|+++.. .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456677778889999999999999999887 5678899999999999997 9999999998874 4677899999999
Q ss_pred HHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHh-cCC
Q 006997 409 AIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGR-AGR 485 (622)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~ 485 (622)
...|++++|+..|+++.+ +.|+ ...|..+..++...|++++|+..++++++. .| +...|+.+..+|.+ .|.
T Consensus 177 ~~~g~~~eAl~~~~kal~---ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHccCHHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999998 6775 678999999999999999999999999965 55 68889999999999 666
Q ss_pred hHHH-----HHHHHhCC--CCCcHHhHHHHHHHHHhcC--CHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC------
Q 006997 486 FDLA-----LKTIHEMP--VEVQAQVWAPLLSACMKHH--NVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG------ 550 (622)
Q Consensus 486 ~~~A-----~~~~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------ 550 (622)
.++| ++.++++. .+.+...|..+...+...| ++++|++.++++ +.+|+++.++..++++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6888 47787776 3445778999999998888 689999999998 999999999999999999985
Q ss_pred ---ChHHHHHHHHHh-hhC
Q 006997 551 ---MWKEAATARGLM-DDR 565 (622)
Q Consensus 551 ---~~~~A~~~~~~~-~~~ 565 (622)
.+++|+++++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 359999999998 553
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=8.5e-14 Score=127.91 Aligned_cols=196 Identities=10% Similarity=-0.050 Sum_probs=154.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILS 442 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~ 442 (622)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+ ..| +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA---SDSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCcCcHHHHHHHHH
Confidence 34556666677777777777777776542 3556777778888888888888888888877 344 4667788888
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 519 (622)
.+...|++++|.++++++.. .+..| +...+..++..|...|++++|.+.++++. .+.+...+..++..+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 88888999999999888875 12445 45677788888888999999999988875 3445777888888899999999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 520 LGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
+|...++++++..|+++..+..++.++.+.|++++|.+.++++.+..
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999888889999999999999999999999887643
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.2e-13 Score=124.25 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=148.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSIL 441 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll 441 (622)
+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+ ..| +..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS---IKPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCChHHHHHHH
Confidence 344555566666666666666666665442 3455677777778888888888888888876 344 456777888
Q ss_pred HHHhcc-CchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCC
Q 006997 442 SACSHS-GMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHN 517 (622)
Q Consensus 442 ~~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 517 (622)
..+... |++++|...++++.+. +..|+ ...+..+...+...|++++|+..++++. .+.+...+..++..+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 888888 8888888888888751 23443 5667778888888888888888888775 34447778888888888999
Q ss_pred HHHHHHHHHHHHccCC-CCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 518 VELGEYAAKNLLTLNP-GSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+++|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999998888 88888888888888899999998888887654
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=7.6e-14 Score=124.56 Aligned_cols=205 Identities=19% Similarity=0.079 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 006997 296 SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIH 375 (622)
Q Consensus 296 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 375 (622)
+...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45667777777888888888888888777653 3355666777777777788888887777777765 445566666666
Q ss_pred HHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHH
Q 006997 376 MFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGL 454 (622)
Q Consensus 376 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~ 454 (622)
++.+.+.. ... .+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|+
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHH
Confidence 66655000 000 00112555566666665555 4443 344555555555666666666
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006997 455 SFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNL 528 (622)
Q Consensus 455 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 528 (622)
..|+++.+. . .++..+..+..+|...|++++|+..++++. .+.+...+..+...+...|++++|+..++++
T Consensus 139 ~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666665544 2 445555555666666666666666665554 2233445555555555666666666555543
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=3.9e-14 Score=129.34 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 006997 399 AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLV 477 (622)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 477 (622)
..+..+...+...|++++|.+.++++.+ ..| +...+..+...+...|++++|...++++... .+.+...+..+.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 166 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALR---AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFG 166 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 3444444455555555555555555554 222 3444555555555555666666655555533 122344555555
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 478 DLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
..+.+.|++++|++.++++. .+.+..++..++..+...|++++|...++++++++|+++.++..++.+
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 55555555555555555543 223344555555556666666666666666666666555555544443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=3.1e-14 Score=130.00 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=154.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSIL 441 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll 441 (622)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+ ..| +...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE---LDSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCcchHHHHHHH
Confidence 445566677777788888888888777653 3566788888899999999999999999987 445 467888899
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHH
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 519 (622)
..+...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|.+.++++. .+.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999865 23467888899999999999999999999886 4556788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 520 LGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
+|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999998743
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=8.8e-13 Score=122.67 Aligned_cols=226 Identities=12% Similarity=-0.068 Sum_probs=169.1
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhcCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006997 264 NEDPLDNLLVSMYTKCGDLELARRVFDAVLEK-SVFLWTSMIGGYAQ----LGYPSEAVNLFKRLLKTSVRPNEATLATT 338 (622)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 338 (622)
.+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 45677888999999999999999999988655 66788899999999 999999999999999876 67778888
Q ss_pred HHHHhc----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHH----
Q 006997 339 LSACAE----LGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAI---- 410 (622)
Q Consensus 339 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---- 410 (622)
...+.. .+++++|...++...+.+ +...+..+..+ |..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~-------------------------------~~~~~~~ 126 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI-------------------------------YHDGKVV 126 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH-------------------------------HHHCSSS
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH-------------------------------HHcCCCc
Confidence 888888 888888888888887654 34444444444 444
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----
Q 006997 411 HGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSH----SGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR---- 482 (622)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 482 (622)
.+++++|++.|++..+ .+ +...+..+...|.. .+++++|...|++..+. .+...+..+...|..
T Consensus 127 ~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp CCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSS
T ss_pred ccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 5666666666666665 33 34555566666665 77777777777777643 245666677777777
Q ss_pred cCChHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHccCCC
Q 006997 483 AGRFDLALKTIHEMPVEVQAQVWAPLLSACMK----HHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 534 (622)
.+++++|++.+++.....+...+..+...+.. .+++++|...+++++++.|+
T Consensus 199 ~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 199 TKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 77888888888776522336667777778877 88888888888888888874
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.57 E-value=5e-14 Score=141.70 Aligned_cols=208 Identities=10% Similarity=-0.004 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh-HHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 006997 349 SKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRI-NKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKM 424 (622)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 424 (622)
+.+...++...... +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+..+|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444333322 34555666666666666777 777776666542 34567888888999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHhcc---------CchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc--------CCh
Q 006997 425 QHVEGLKPDAVVYTSILSACSHS---------GMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRA--------GRF 486 (622)
Q Consensus 425 ~~~~~~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~ 486 (622)
.+ ..|+...+..+..++... |++++|+..++++.+. .| +...|..+..+|... |++
T Consensus 164 l~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 164 LT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred Hh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88 678888888999999999 9999999999999865 45 578889999999998 999
Q ss_pred HHHHHHHHhCC-CCC----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 006997 487 DLALKTIHEMP-VEV----QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGL 561 (622)
Q Consensus 487 ~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (622)
++|++.|+++. ..| +...|..++.++...|++++|.+.++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999987 345 6888999999999999999999999999999999999999999999999999999987665
Q ss_pred hh
Q 006997 562 MD 563 (622)
Q Consensus 562 ~~ 563 (622)
+.
T Consensus 318 ~~ 319 (474)
T 4abn_A 318 TK 319 (474)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=3e-14 Score=141.51 Aligned_cols=262 Identities=13% Similarity=0.027 Sum_probs=175.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCchhHHHH
Q 006997 302 SMIGGYAQLGYPSEAVNLFKRLLKTSVRPNE----ATLATTLSACAELGSLSKGKEIEEYIVLN----G-LESNRQVQTS 372 (622)
Q Consensus 302 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 372 (622)
.+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|+++.|...++++.+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3445556666666666666666654211 22 24555555666666666666666655432 1 1222355566
Q ss_pred HHHHHHhcCChHHHHHHhccCCCC---------ChhHHHHHHHHHHHcCC-----------------HHHHHHHHHHhHH
Q 006997 373 LIHMFSKCGRINKAKEVFERVPDK---------DLAVWSAMINGYAIHGM-----------------GDQALNLFYKMQH 426 (622)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~ 426 (622)
+...|...|++++|...|++...- ...++..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666777777776666654421 22356667777777787 7888888777654
Q ss_pred h---cCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 006997 427 V---EGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP- 497 (622)
Q Consensus 427 ~---~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 497 (622)
. .+..|. ..++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|...++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 111122 346777888888999999999999887653211112 2367788888999999999999998764
Q ss_pred CC-------CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 498 VE-------VQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS------TGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 498 ~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.. ....++..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 114567788889999999999999999998875533 34888999999999999999999998865
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.57 E-value=6.8e-14 Score=138.65 Aligned_cols=271 Identities=11% Similarity=0.035 Sum_probs=125.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CH
Q 006997 265 EDPLDNLLVSMYTKCGDLELARRVFDAVLE--K-S----VFLWTSMIGGYAQLGYPSEAVNLFKRLLKT----SVRP-NE 332 (622)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 332 (622)
....+......+...|++++|...|+++.. + + ..++..+...+...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566666677777777777766532 1 2 235566666666777777777776665432 1111 12
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCC----C-CchhHHHHHHHHHHhcCC--------------------hHHHH
Q 006997 333 ATLATTLSACAELGSLSKGKEIEEYIVLNGL----E-SNRQVQTSLIHMFSKCGR--------------------INKAK 387 (622)
Q Consensus 333 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~--------------------~~~A~ 387 (622)
..+..+...+...|+++.|...++.+.+... + ....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3445555566666666666666665543310 0 012344455555555555 55554
Q ss_pred HHhccCCC-----C----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhccCchHHHH
Q 006997 388 EVFERVPD-----K----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD----AVVYTSILSACSHSGMVDDGL 454 (622)
Q Consensus 388 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~ 454 (622)
+.+++... . ...++..+...|...|++++|...+++..+...-.++ ..++..+..++...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44443321 0 1123444444445555555555555544431111111 113444444444555555555
Q ss_pred HHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCc----HHhHHHHHHHHHhcCCHHHHH
Q 006997 455 SFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP----VEVQ----AQVWAPLLSACMKHHNVELGE 522 (622)
Q Consensus 455 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~ 522 (622)
..+++......-.++ ..++..+...|...|++++|...++++. ..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555444322100011 2333444444444555555544444432 0000 223444444444445555555
Q ss_pred HHHHHHHccCCCC
Q 006997 523 YAAKNLLTLNPGS 535 (622)
Q Consensus 523 ~~~~~~~~~~p~~ 535 (622)
..+++++++.+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5555554444433
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=5.9e-13 Score=122.24 Aligned_cols=208 Identities=12% Similarity=0.034 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006997 297 VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHM 376 (622)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (622)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 4567777777788888888888888777653 2345566666666666677777766666665543 22
Q ss_pred HHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHH
Q 006997 377 FSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
+...+..+...|...|++++|.+.++++.+ .+..|+ ...+..+..++...|++++|..
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 233445555566666666777777766654 334453 4566667777777788888888
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 456 FFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 456 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
.++++... . +.+...+..++..|...|++++|...++++. .+.+...+..+...+...|+.++|.+.+++++++.|
T Consensus 163 ~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 88777754 1 2346677777888888888888888887764 334566777888888889999999999999999999
Q ss_pred CCCchHH
Q 006997 534 GSTGNYI 540 (622)
Q Consensus 534 ~~~~~~~ 540 (622)
+++....
T Consensus 241 ~~~~~~~ 247 (252)
T 2ho1_A 241 GSLEYQE 247 (252)
T ss_dssp TSHHHHH
T ss_pred CCHHHHH
Confidence 8776554
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=6.1e-14 Score=134.96 Aligned_cols=263 Identities=14% Similarity=0.043 Sum_probs=176.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CC-CCchhHHHH
Q 006997 302 SMIGGYAQLGYPSEAVNLFKRLLKTSVRPN----EATLATTLSACAELGSLSKGKEIEEYIVLN----GL-ESNRQVQTS 372 (622)
Q Consensus 302 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 372 (622)
.....+...|++++|+..|+++.+.... + ...+..+...+...|+++.|...++.+.+. +. +....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555666666666666666554211 2 234555555666666666666666554332 11 112345566
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----CC----hhHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 006997 373 LIHMFSKCGRINKAKEVFERVPD-----KD----LAVWSAMINGYAIHGM--------------------GDQALNLFYK 423 (622)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 423 (622)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66667777777777766665432 11 2356666777777777 8888888877
Q ss_pred hHHh---cCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 006997 424 MQHV---EGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHE 495 (622)
Q Consensus 424 ~~~~---~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (622)
..+. .+..|. ...+..+...+...|++++|...+++......-.++ ...+..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6541 111122 346777888888999999999999887643111122 33677888899999999999999987
Q ss_pred CC-C---CCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHHH
Q 006997 496 MP-V---EVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS------TGNYILMANLFTSAGMWKEAATARGL 561 (622)
Q Consensus 496 ~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 561 (622)
.. . .++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|.+.|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 64 1 111 4567788889999999999999999998875543 34788999999999999999999999
Q ss_pred hhhC
Q 006997 562 MDDR 565 (622)
Q Consensus 562 ~~~~ 565 (622)
..+.
T Consensus 329 a~~~ 332 (338)
T 3ro2_A 329 HLEI 332 (338)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8763
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.3e-13 Score=128.47 Aligned_cols=236 Identities=12% Similarity=-0.024 Sum_probs=145.8
Q ss_pred CCHHHHHHHHhhcCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH
Q 006997 280 GDLELARRVFDAVLEK-------SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGK 352 (622)
Q Consensus 280 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 352 (622)
|++++|...|+++.+. +..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555444321 23455566666666666666666666666543 224556666666666666777777
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 006997 353 EIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGL 430 (622)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 430 (622)
..++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ |+..........+...|++++|...+++... . .
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-K-S 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-H-S
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh-c-C
Confidence 6666666654 33456666677777777777777777766652 3333333344445666888888888877776 2 2
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHh
Q 006997 431 KPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-----IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQV 504 (622)
Q Consensus 431 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 504 (622)
+++...+ .++..+...++.++|...++++.. ..|+ ...+..+...|.+.|++++|...++++. ..|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 2333333 466677777788888888887763 2332 4677788888888899999999888876 34432
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 006997 505 WAPLLSACMKHHNVELGEYAA 525 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~ 525 (622)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 333455666777888877766
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=1.2e-12 Score=117.71 Aligned_cols=209 Identities=13% Similarity=-0.008 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 006997 297 VFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHM 376 (622)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 376 (622)
+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3445555555556666666666665555432 2233444444444555555555555554444332
Q ss_pred HHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHH
Q 006997 377 FSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIH-GMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGL 454 (622)
Q Consensus 377 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~ 454 (622)
..+..++..+...+... |++++|...++++.+ .+..|+ ...+..+..++...|++++|.
T Consensus 73 ------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 ------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 12344556666677777 778888888877775 444444 466777778888888888888
Q ss_pred HHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 455 SFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VE-VQAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 455 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
..++++.+. .| +...+..++..+.+.|++++|...++++. .+ .+...+..+...+...|+.+.|...++.+.+
T Consensus 134 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 134 AYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888754 34 46777788888888888888888888775 23 4566677777778889999999999999999
Q ss_pred cCCCCCchHHHH
Q 006997 531 LNPGSTGNYILM 542 (622)
Q Consensus 531 ~~p~~~~~~~~l 542 (622)
..|+++.....+
T Consensus 211 ~~p~~~~~~~~l 222 (225)
T 2vq2_A 211 NFPYSEELQTVL 222 (225)
T ss_dssp HCTTCHHHHHHH
T ss_pred hCCCCHHHHHHh
Confidence 999887766544
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.53 E-value=2.3e-10 Score=118.13 Aligned_cols=217 Identities=9% Similarity=-0.073 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccC
Q 006997 315 EAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGK-EIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERV 393 (622)
Q Consensus 315 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 393 (622)
.+..+|++.+..- +-....|...+..+...|+.+.|. .+++.+.... |.+...+...+....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666666542 335556666666666667777775 7777776543 455566666777777777777777777765
Q ss_pred CC-------------C------------ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhcc-
Q 006997 394 PD-------------K------------DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHS- 447 (622)
Q Consensus 394 ~~-------------~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~- 447 (622)
.. | ....|...+....+.|+.+.|..+|.++.+ .-..+....|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHhC
Confidence 43 2 123677778888888999999999999987 30111233443333333333
Q ss_pred CchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----cHHhHHHHHHHHHhcCCHHHHH
Q 006997 448 GMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV----QAQVWAPLLSACMKHHNVELGE 522 (622)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~ 522 (622)
++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++.. ..| ....|...+..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 56999999999999763 3456677788898889999999999999987 233 3567888998889999999999
Q ss_pred HHHHHHHccCCCCC
Q 006997 523 YAAKNLLTLNPGST 536 (622)
Q Consensus 523 ~~~~~~~~~~p~~~ 536 (622)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999764
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=2.5e-13 Score=134.55 Aligned_cols=268 Identities=14% Similarity=0.039 Sum_probs=171.4
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC----chhHHHHHHHHHhcCCHHHHHHHHhhcCC-----C---
Q 006997 228 TPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNE----DPLDNLLVSMYTKCGDLELARRVFDAVLE-----K--- 295 (622)
Q Consensus 228 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~--- 295 (622)
.+....+......+...|++++|...++.+.+.+ +.+ ..++..+...|...|++++|...|++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3444555666667777788888888888777764 223 24566777777788888888777766521 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------hH
Q 006997 296 -SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSV-RPN----EATLATTLSACAELGS--------------------LS 349 (622)
Q Consensus 296 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~ 349 (622)
...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 234666777777778888888887777654210 011 2356666677777777 77
Q ss_pred HHHHHHHHHHHc----CC-CCchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----hhHHHHHHHHHHHcCCHH
Q 006997 350 KGKEIEEYIVLN----GL-ESNRQVQTSLIHMFSKCGRINKAKEVFERVPD-----KD----LAVWSAMINGYAIHGMGD 415 (622)
Q Consensus 350 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~ 415 (622)
.|...++...+. +. +....++..+...|...|++++|...|++..+ ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 777777666443 11 11234566677777778888888777776542 11 125666777777788888
Q ss_pred HHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChH
Q 006997 416 QALNLFYKMQHVEGLKPD----AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 487 (622)
+|...+++..+...-.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888776651111111 345666777777788888888887776643111112 445667777777888888
Q ss_pred HHHHHHHhC
Q 006997 488 LALKTIHEM 496 (622)
Q Consensus 488 ~A~~~~~~~ 496 (622)
+|.+.+++.
T Consensus 325 ~A~~~~~~a 333 (406)
T 3sf4_A 325 QAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777764
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=5.7e-13 Score=139.16 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=145.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 006997 398 LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLC 475 (622)
Q Consensus 398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 475 (622)
..+|+.+...|.+.|++++|++.|++..+ +.|+ ..++..+..+|.+.|++++|+..|+++.+. .| +...|..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 45788889999999999999999999998 6776 678899999999999999999999999854 56 4788999
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWK 553 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (622)
+..+|.+.|++++|++.++++. .+.+...|..++.++...|++++|++.|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999886 34457889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 006997 554 EAATARGLMDD 564 (622)
Q Consensus 554 ~A~~~~~~~~~ 564 (622)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1e-12 Score=129.01 Aligned_cols=196 Identities=12% Similarity=0.067 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC-----C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC----
Q 006997 368 QVQTSLIHMFSKCGRINKAKEVFERVPD-----K-----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD---- 433 (622)
Q Consensus 368 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---- 433 (622)
.++..+...|...|++++|...+.+..+ + ...+++.+...|...|++++|+..+++..+...-.++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 3444455555555555555554443331 1 1235666677777778888888777776651111122
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhc---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC------CCCc-H
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNF---GIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP------VEVQ-A 502 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~ 502 (622)
..++..+..+|...|++++|+..+++..... +..| ...++..+...|.+.|++++|...+++.. ..|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2367777888888888888888888776411 1113 35567778888888888888888888764 1222 2
Q ss_pred HhHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 503 QVWAPLLSACMKHHN---VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..+..+...+...|+ +++|...+++. ...|.....+..++.+|.+.|++++|.+.+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234566777777788 77777777766 33344556788889999999999999999988865
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.9e-12 Score=112.27 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=133.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSIL 441 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll 441 (622)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+..+|...|++++|+..+.+... ..|+ ...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHHHH
Confidence 455667777777777777777777776652 3556777788888888999999999888877 4454 56677777
Q ss_pred HHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHH
Q 006997 442 SACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 519 (622)
..+...++++.+...+.+.... .+.+...+..+..+|.+.|++++|++.++++. .+.+..+|..++.++...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888899999999999988854 13357788889999999999999999999876 4455778999999999999999
Q ss_pred HHHHHHHHHHccCCCCC
Q 006997 520 LGEYAAKNLLTLNPGST 536 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~ 536 (622)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999653
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=4.1e-13 Score=133.33 Aligned_cols=272 Identities=14% Similarity=0.051 Sum_probs=170.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHhhcCCC---------CHHH
Q 006997 233 VFLNLILGCAQVGNLFLALSMHSLLLKSGYNNED----PLDNLLVSMYTKCGDLELARRVFDAVLEK---------SVFL 299 (622)
Q Consensus 233 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 299 (622)
.+..+...+...|++++|...++.+.+.+ +.+. .++..+...|...|++++|...|++.... ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455566677778888888887777763 2222 35666666677777777777766654221 2245
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCC
Q 006997 300 WTSMIGGYAQLGYPSEAVNLFKRLLKTS----V-RPNEATLATTLSACAELGS----------LSKGKEIEEYIVLNGLE 364 (622)
Q Consensus 300 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~ 364 (622)
+..+...|...|++++|...+++..+.. - .....++..+...+...|+ .+.+...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 5556666666666666666666654321 0 0111233344444444444 1111110
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCCC-------C--ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC--
Q 006997 365 SNRQVQTSLIHMFSKCGRINKAKEVFERVPD-------K--DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-- 433 (622)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-- 433 (622)
+++|.+.+++..+ + ...++..+...|...|++++|+..+++..+...-.++
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 4444444433221 0 1235666777788888888888888887651111112
Q ss_pred --HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C------CC
Q 006997 434 --AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP-V------EV 500 (622)
Q Consensus 434 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~~ 500 (622)
...+..+..++...|++++|...++++.....-..+ ...+..+...|...|++++|...+++.. . .+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 236778888899999999999999887753211111 4667788899999999999999998875 1 11
Q ss_pred -cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 501 -QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 501 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
...++..+...+...|++++|...+++++++.+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 134677888899999999999999999999876
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=2.6e-10 Score=117.70 Aligned_cols=401 Identities=7% Similarity=0.013 Sum_probs=267.9
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHHHHcCCC---hhHHHHHHHHHHHCC-CCCCHhHHHH
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGE---TSIVSWTTIIGGYVNVGN---VNEAFGLCNQMRRMS-VTPDLVVFLN 236 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~~~ 236 (622)
|...|..++..+.+.+.++.+..+|+++.. .+...|...+..-.+.++ ++.+..+|++..... ..|+...|..
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 777888888888888888888888888765 344567777777778888 888888888887753 1367777666
Q ss_pred HHHHHhccCCh--------HHHHHHHHHHHH-hCC-CC-CchhHHHHHHHHHh---------cCCHHHHHHHHhhcCCC-
Q 006997 237 LILGCAQVGNL--------FLALSMHSLLLK-SGY-NN-EDPLDNLLVSMYTK---------CGDLELARRVFDAVLEK- 295 (622)
Q Consensus 237 ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~- 295 (622)
-+......++. +...++|+..+. .|. .+ +...|...+..... .++++.+..+|+++..-
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP 224 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence 66555444433 334466766655 355 44 34577776665432 33567788888877642
Q ss_pred --CH-HHHH---HHHHHH----------HhcCChHHHHHHHHHHHh--CCCC---------------C-----CH---HH
Q 006997 296 --SV-FLWT---SMIGGY----------AQLGYPSEAVNLFKRLLK--TSVR---------------P-----NE---AT 334 (622)
Q Consensus 296 --~~-~~~~---~l~~~~----------~~~~~~~~a~~~~~~m~~--~~~~---------------~-----~~---~~ 334 (622)
+. ..|. .+.... -...+++.|...+.++.. .++. | +. ..
T Consensus 225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence 11 2232 222111 001123344455544321 1110 1 00 22
Q ss_pred HHHHHHHHhccC-------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH-HHhccCCC--C-ChhHHHH
Q 006997 335 LATTLSACAELG-------SLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAK-EVFERVPD--K-DLAVWSA 403 (622)
Q Consensus 335 ~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~--~-~~~~~~~ 403 (622)
|...+.--...+ ..+.+..+|++++... +....+|-..+..+...|+.++|. ++|++... | +...|..
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~ 383 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFS 383 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 333332222211 1234566788887764 567888888888888899999996 99987763 3 4556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcC---------CCCC------------HHHHHHHHHHHhccCchHHHHHHHHHhHH
Q 006997 404 MINGYAIHGMGDQALNLFYKMQHVEG---------LKPD------------AVVYTSILSACSHSGMVDDGLSFFKSMQS 462 (622)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 462 (622)
.+...-..|++++|.++|+++.+ .. -.|+ ...|...+....+.|+.+.|..+|.++.+
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~-~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCID-RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH-HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888899999999999999886 21 0132 23577778888888999999999999985
Q ss_pred hcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---CC
Q 006997 463 NFGIEPSIEHYLCLVDLLGRAG-RFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG---ST 536 (622)
Q Consensus 463 ~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~ 536 (622)
.. ..+....|...+..-.+.| +.+.|.++|+... .+.+...|..++......|+.+.|..+|++++...|+ ..
T Consensus 463 ~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 463 LK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred hc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 31 1223445554444444544 5899999999876 4556777888888888899999999999999998873 45
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
..|..+...-.+.|+.+.+.++.+++.+..+
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6788888888999999999999999987543
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=7.1e-12 Score=118.62 Aligned_cols=217 Identities=12% Similarity=0.048 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCh-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006997 314 SEAVNLFKRLLKTSVRPNEATLATTLSACAE-------LGSL-------SKGKEIEEYIVLNGLESNRQVQTSLIHMFSK 379 (622)
Q Consensus 314 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (622)
++|..+|++.+... +-+...|..+...+.. .|++ ++|..+++++.+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776642 2344555555555432 3554 6666666666653113344556666666666
Q ss_pred cCChHHHHHHhccCCC--C-Chh-HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHH-hccCchHHH
Q 006997 380 CGRINKAKEVFERVPD--K-DLA-VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSAC-SHSGMVDDG 453 (622)
Q Consensus 380 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~-~~~g~~~~a 453 (622)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|+++.+ ..|+ ...|....... ...|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666665543 2 222 555556666666666666666666655 2232 23333222221 124666666
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--cHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006997 454 LSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPV----EV--QAQVWAPLLSACMKHHNVELGEYAAKN 527 (622)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 527 (622)
..+|+++.+.. +-+...|..++..+.+.|++++|..+|+++.. +| ....|..++......|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666655431 22345555555556666666666666655531 22 233555555555556666666666666
Q ss_pred HHccCCCCC
Q 006997 528 LLTLNPGST 536 (622)
Q Consensus 528 ~~~~~p~~~ 536 (622)
+++..|+++
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 666666543
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=3.8e-11 Score=113.55 Aligned_cols=213 Identities=10% Similarity=0.044 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHhccCCC---C-ChhHHHHHHHHHHH
Q 006997 349 SKGKEIEEYIVLNGLESNRQVQTSLIHMFS-------KCGRI-------NKAKEVFERVPD---K-DLAVWSAMINGYAI 410 (622)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 410 (622)
+.|..+|+++.+.. +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888877764 566777777777765 34775 888888887654 2 44578888888888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCH-H-HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH-hcCCh
Q 006997 411 HGMGDQALNLFYKMQHVEGLKPDA-V-VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLG-RAGRF 486 (622)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~ 486 (622)
.|++++|..+|+++.+ +.|+. . .|..++..+.+.|++++|..+|+++.+. .| +...|...+.... ..|++
T Consensus 112 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCH
Confidence 8999999999999887 66753 3 7888888888888999999999888843 33 4455544433322 36889
Q ss_pred HHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCC-CCchHHHHHHHHHhcCChHHHHHHHH
Q 006997 487 DLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTL---NPG-STGNYILMANLFTSAGMWKEAATARG 560 (622)
Q Consensus 487 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 560 (622)
++|.++|+++. .+.+...|..++..+...|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998875 3445778888888888889999999999999885 453 56678888888888899999999988
Q ss_pred HhhhCCCc
Q 006997 561 LMDDRRLT 568 (622)
Q Consensus 561 ~~~~~~~~ 568 (622)
++.+..+.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 88776554
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=2.2e-12 Score=129.70 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=157.5
Q ss_pred hHHHHHHhccCC---CCChhHHHHHHHHHHHcCCH-HHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHH
Q 006997 383 INKAKEVFERVP---DKDLAVWSAMINGYAIHGMG-DQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFF 457 (622)
Q Consensus 383 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 457 (622)
++++...++... ..+...+..+...+...|++ ++|++.|+++.+ ..|+ ...+..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK---LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555443 23667888889999999999 999999999998 5675 678999999999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc--------CCH
Q 006997 458 KSMQSNFGIEPSIEHYLCLVDLLGRA---------GRFDLALKTIHEMP--VEVQAQVWAPLLSACMKH--------HNV 518 (622)
Q Consensus 458 ~~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------~~~ 518 (622)
+++. .+.|+...+..+..+|... |++++|++.++++. .+.+...|..++.++... |++
T Consensus 161 ~~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999 4578888899999999999 99999999999986 445588899999999998 999
Q ss_pred HHHHHHHHHHHccCC---CCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 519 ELGEYAAKNLLTLNP---GSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
++|+..++++++++| +++.++..++.+|...|++++|.+.|++..+..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999 9999999999999999999999999999987543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=3e-13 Score=128.60 Aligned_cols=237 Identities=14% Similarity=0.096 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C-
Q 006997 297 VFLWTSMIGGYAQLGYPSEAVNLFKRLLKT-------SVRPNEATLATTLSACAELGSLSKGKEIEEYIVLN------G- 362 (622)
Q Consensus 297 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 362 (622)
..++..+...+...|++++|...|+++.+. ........+..+...+...|++++|...++.+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456777888888888888888888887762 11223345666666777777777777777766543 1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhc-----CCCCC-HHH
Q 006997 363 LESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVE-----GLKPD-AVV 436 (622)
Q Consensus 363 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~~ 436 (622)
.+....++..+...|... |++++|...++++.+.. +..|+ ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~-------------------------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKR-------------------------------GKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------------------------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHc-------------------------------CcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 111233444444444444 44444444444444310 11122 234
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---------CC
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNF-----GIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-V---------EV 500 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---------~~ 500 (622)
+..+...+...|++++|+.+++++.... +..| ....+..+..+|...|++++|.+.++++. . .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5555556666666666666666554320 0011 23345555666666666666666665543 0 01
Q ss_pred c-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 501 Q-------AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 501 ~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
. ...+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111122222333445666666777777777777788888888888888888888888887765
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=3.7e-12 Score=122.39 Aligned_cols=135 Identities=11% Similarity=0.024 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hh
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD----AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IE 471 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 471 (622)
.+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4455556666667777777666665541111111 235666777777778888888877776543111111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-C-----CC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-V-----EV--QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
.+..+...|...|++++|...++++. . .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 66777788888888888888887764 1 11 1346777888899999999999999999987764
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=5e-12 Score=113.99 Aligned_cols=163 Identities=12% Similarity=-0.012 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHH
Q 006997 399 AVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLV 477 (622)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 477 (622)
..+......+...|++++|+..|++..+ ..-.++...+..+..++...|++++|+..+++.... .| +...+..+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~ 83 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLK-LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh-ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHH
Confidence 3444444555555555555555555554 221134444444555555555555555555555522 33 234455555
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-cH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHHHH
Q 006997 478 DLLGRAGRFDLALKTIHEMP-VEV-QA-------QVWAPLLSACMKHHNVELGEYAAKNLLTLNPG--STGNYILMANLF 546 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~-~~~-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 546 (622)
.+|...|++++|++.+++.. ..| +. ..|..++..+...|++++|+..++++++++|+ ++.++..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 55555555555555555543 122 22 23445555555556666666666666666665 555566666666
Q ss_pred HhcCCh---------------------------HHHHHHHHHhhhC
Q 006997 547 TSAGMW---------------------------KEAATARGLMDDR 565 (622)
Q Consensus 547 ~~~g~~---------------------------~~A~~~~~~~~~~ 565 (622)
...|+. ++|...+++..+.
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555555 8999999988774
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=9.2e-12 Score=107.98 Aligned_cols=162 Identities=17% Similarity=0.085 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVD 478 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 478 (622)
.+..+...+...|++++|...++++.+ ..| +...+..+...+...|++++|...++++.+. .+.+...+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYD---ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCC---TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 344555666677777777777777665 333 3556667777777777777777777777654 1335666777777
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006997 479 LLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
.+...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|+++.++..++.++...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888888887765 34556778888888889999999999999999999988999999999999999999999
Q ss_pred HHHHHhhhCC
Q 006997 557 TARGLMDDRR 566 (622)
Q Consensus 557 ~~~~~~~~~~ 566 (622)
+.++++.+..
T Consensus 165 ~~~~~~~~~~ 174 (186)
T 3as5_A 165 PHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcC
Confidence 9999887643
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=1.1e-10 Score=113.90 Aligned_cols=261 Identities=13% Similarity=0.010 Sum_probs=168.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCC-Cc----hhHHHHH
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEA----TLATTLSACAELGSLSKGKEIEEYIVLNGLE-SN----RQVQTSL 373 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 373 (622)
....+...|++++|...+++........+.. .+..+...+...|+++.|...+++....... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777776666543222221 3344445566667777777776666543100 11 1234556
Q ss_pred HHHHHhcCChHHHHHHhccCCC-------C----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCC--C--CHHHHH
Q 006997 374 IHMFSKCGRINKAKEVFERVPD-------K----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLK--P--DAVVYT 438 (622)
Q Consensus 374 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--p--~~~~~~ 438 (622)
...+...|++++|...+++... + ....+..+...+...|++++|...+++..+ .... + ...++.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhccCcHHHHHHHH
Confidence 6677777777777777765432 1 123455567778888999999988888776 2211 1 124567
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCc-----HHhHHH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYL-----CLVDLLGRAGRFDLALKTIHEMP-VEVQ-----AQVWAP 507 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~ 507 (622)
.+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 777888889999999999988765421111111222 23345778899999999998876 2221 224567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGS------TGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+...+...|++++|...++++++..+.. ..++..++.++...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7788888999999999999988754321 23677788999999999999999998865
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=2e-11 Score=119.68 Aligned_cols=231 Identities=9% Similarity=-0.025 Sum_probs=166.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CC----CchhHHH
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKT----SVRP-NEATLATTLSACAELGSLSKGKEIEEYIVLNG--LE----SNRQVQT 371 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 371 (622)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...++.+.+.. .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777777777777777653 1111 22456666777777788888877777765531 11 1235667
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHHh---cCCCCC-HHHHH
Q 006997 372 SLIHMFSKCGRINKAKEVFERVPD-----KD----LAVWSAMINGYAIHGMGDQALNLFYKMQHV---EGLKPD-AVVYT 438 (622)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~ 438 (622)
.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.+++..+. .+..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888876652 11 136777888999999999999999988751 133243 56788
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCc-HHhHHHHHHH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEPS---IEHYLCLVDLLGRAGR---FDLALKTIHEMPVEVQ-AQVWAPLLSA 511 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 511 (622)
.+..++...|++++|...+++......-..+ ...+..+...|...|+ +++|+.++++....|+ ...+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999987753111112 2335678888999999 9999999999874444 4467789999
Q ss_pred HHhcCCHHHHHHHHHHHHccCC
Q 006997 512 CMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p 533 (622)
+...|++++|...+++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=1.8e-11 Score=110.23 Aligned_cols=205 Identities=9% Similarity=0.023 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-ChhHHHHHHH
Q 006997 330 PNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD--K-DLAVWSAMIN 406 (622)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 406 (622)
.++..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777788888889999999999999998887546677777788888899999999998887763 2 4567778888
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCC-H-------HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC---hhHHHH
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPD-A-------VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS---IEHYLC 475 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 475 (622)
.|...|++++|+..+++..+ ..|+ . ..|..+...+...|++++|+..|+++. .+.|+ ...+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~ 158 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYS 158 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHH
Confidence 88899999999999998887 5554 3 346777778888899999999998887 34564 466777
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
+..+|...|+. +++++. ...+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 77777665543 222222 122233333322 334567899999999999999999988888877654
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=122.68 Aligned_cols=240 Identities=12% Similarity=0.046 Sum_probs=155.9
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------
Q 006997 264 NEDPLDNLLVSMYTKCGDLELARRVFDAVLE--------K---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT------ 326 (622)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------ 326 (622)
....++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456788899999999999999999988754 2 2457888999999999999999999998764
Q ss_pred CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC------CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChh
Q 006997 327 SVRP-NEATLATTLSACAELGSLSKGKEIEEYIVLNG------LESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLA 399 (622)
Q Consensus 327 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 399 (622)
+-.| ....+..+...+...|++++|...++.+.+.. ..+. ...
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~ 154 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAK 154 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHH
Confidence 2222 34577888889999999999999998886541 1111 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhc------CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhc------CC
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVE------GLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNF------GI 466 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~ 466 (622)
.+..+...+...|++++|++.++++.+ . +..|+ ..++..+..++...|++++|...++++.... ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALE-IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344445555555666666666665554 1 11232 3456667777777788888877777766420 11
Q ss_pred CCC-------hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 467 EPS-------IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 467 ~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
.+. ...+..+...+...+.+.+|...++... ..| ...++..++.++...|++++|...+++++++.|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111 1122233334455666777777777765 333 3667889999999999999999999999998774
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=5.3e-11 Score=109.71 Aligned_cols=203 Identities=9% Similarity=-0.003 Sum_probs=122.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--C-C---hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC---C-HH
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPD--K-D---LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP---D-AV 435 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p---~-~~ 435 (622)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++..+ ..| . ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~ 90 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ---IYQIDPRVPQ 90 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH---HCCCCchhHH
Confidence 344444455555555666666666555542 2 1 23444555555555666666666665555 222 1 22
Q ss_pred HHHHHHHHHhc--------cCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHH
Q 006997 436 VYTSILSACSH--------SGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWA 506 (622)
Q Consensus 436 ~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 506 (622)
.+..+..++.. .|++++|+..|+++... .|+ ......+.......++. ...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHH
Confidence 34444445555 55555566555555543 232 11221111111000000 11236
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCccCCCc
Q 006997 507 PLLSACMKHHNVELGEYAAKNLLTLNPGST---GNYILMANLFTSA----------GMWKEAATARGLMDDRRLTKEPGW 573 (622)
Q Consensus 507 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~ 573 (622)
.++..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------ 226 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------ 226 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC------
Confidence 678889999999999999999999999854 5789999999977 999999999999987543
Q ss_pred eEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHHHc
Q 006997 574 SQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLLEA 612 (622)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 612 (622)
.+|...++...+..+...+.+.
T Consensus 227 -----------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 -----------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -----------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2566777887787877777653
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=3.7e-11 Score=117.49 Aligned_cols=195 Identities=12% Similarity=0.025 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC-----C-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC----H
Q 006997 369 VQTSLIHMFSKCGRINKAKEVFERVPD-----K-----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD----A 434 (622)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~ 434 (622)
++..+...|...|+++.|...+.+..+ + ...+++.+...|...|++++|++.|++..+...-.++ .
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344444455555555544444443321 1 1234555666677777777777777666541111112 2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcC--CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC------CCCc-HHh
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFG--IEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP------VEVQ-AQV 504 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~ 504 (622)
.++..+..+|...|++++|+..+++...... ..| ...++..+...|.+.|++++|...+++.. ..|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3566677777778888888888777764100 122 25566677777888888888888877653 1222 233
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 505 WAPLLSACMKHHN---VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 505 ~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+..+...+...++ +++|...+++. ...|.....+..++.+|.+.|++++|...|++..+
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555556666 66676666652 22333455677888888888888888888887754
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=1.3e-10 Score=100.67 Aligned_cols=167 Identities=17% Similarity=0.105 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILS 442 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~ 442 (622)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+ ..| +...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---DAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHH
Confidence 34566778888899999999999998875 3567788888999999999999999999987 345 4678888899
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVEL 520 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 520 (622)
.+...|++++|.+.++++... .+.+...+..+...+...|++++|.+.++++. .+.+...+..++..+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999865 24467888889999999999999999999876 44557789999999999999999
Q ss_pred HHHHHHHHHccCCCCCch
Q 006997 521 GEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 521 a~~~~~~~~~~~p~~~~~ 538 (622)
|...++++++..|+++..
T Consensus 163 A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 163 ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHHcCCCchhh
Confidence 999999999999876644
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=1.1e-09 Score=107.07 Aligned_cols=230 Identities=10% Similarity=-0.014 Sum_probs=165.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcC--CC----CchhHH
Q 006997 302 SMIGGYAQLGYPSEAVNLFKRLLKTSV-RPN----EATLATTLSACAELGSLSKGKEIEEYIVLNG--LE----SNRQVQ 370 (622)
Q Consensus 302 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~ 370 (622)
.....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...++.+.+.. .. ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677888888888887765311 122 2456667777788888888888877775531 11 124566
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhc---CCCCCHHHHH
Q 006997 371 TSLIHMFSKCGRINKAKEVFERVPD-----KD----LAVWSAMINGYAIHGMGDQALNLFYKMQHVE---GLKPDAVVYT 438 (622)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~ 438 (622)
+.+..+|...|++++|.+.|++..+ ++ ..++..+..+|...|++++|+..+++..+.. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 7778888888888888888876552 12 2467778888999999999999999877511 2222356788
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCc-HHhHHHHHHH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEPS---IEHYLCLVDLLGRAGR---FDLALKTIHEMPVEVQ-AQVWAPLLSA 511 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 511 (622)
.+..++.+.|++++|...+++......-.++ ...+..+...|...|+ +.+|+..+++....|+ ...+..++..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999998865222122 3445666777788888 9999999998764443 4466788889
Q ss_pred HHhcCCHHHHHHHHHHHHcc
Q 006997 512 CMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~ 531 (622)
|...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 84
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.2e-11 Score=102.69 Aligned_cols=140 Identities=11% Similarity=-0.008 Sum_probs=108.3
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 006997 406 NGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRA 483 (622)
Q Consensus 406 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 483 (622)
..+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.|+++.+. .| +...|..+..+|.+.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 344556777888888877765 4454 345667788888888888888888888854 45 577888888888888
Q ss_pred CChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHHHHHH-HHHHHccCCCCCchHHHHHHHHHhcCC
Q 006997 484 GRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVELGEYA-AKNLLTLNPGSTGNYILMANLFTSAGM 551 (622)
Q Consensus 484 g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (622)
|++++|+..|+++. . +.+...|..++..+...|++++|.+. ++++++++|+++.+|...+.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888888876 3 34577888888889899988766554 589999999999999999999888885
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=1.1e-10 Score=109.48 Aligned_cols=203 Identities=7% Similarity=0.043 Sum_probs=147.1
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----hhHHHHHHHHHHHcCCHHHH
Q 006997 347 SLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD-----KD----LAVWSAMINGYAIHGMGDQA 417 (622)
Q Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 417 (622)
++++|...+..+ ...|...|++++|.+.|.+... .+ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 3457778888888888876542 11 35788888999999999999
Q ss_pred HHHHHHhHHhcCCCCC----HHHHHHHHHHHhcc-CchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHH
Q 006997 418 LNLFYKMQHVEGLKPD----AVVYTSILSACSHS-GMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDL 488 (622)
Q Consensus 418 ~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 488 (622)
+..+++..+...-..+ ..++..+..+|... |++++|+..|++......-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988762111112 34688888999996 9999999999998754211111 3568889999999999999
Q ss_pred HHHHHHhCC-CCCcH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch-----HHHHHHHHH--hcCCh
Q 006997 489 ALKTIHEMP-VEVQA--------QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGN-----YILMANLFT--SAGMW 552 (622)
Q Consensus 489 A~~~~~~~~-~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 552 (622)
|+..++++. ..|+. ..+..++.++...|++++|+..++++++++|+.+.. +..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999875 33321 156778888999999999999999999999976653 344566664 46789
Q ss_pred HHHHHHHHHhhh
Q 006997 553 KEAATARGLMDD 564 (622)
Q Consensus 553 ~~A~~~~~~~~~ 564 (622)
++|+..|+++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 999999876644
No 86
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=4.1e-10 Score=100.94 Aligned_cols=181 Identities=13% Similarity=0.010 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC--CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH----HHHH
Q 006997 369 VQTSLIHMFSKCGRINKAKEVFERVPD--KD----LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA----VVYT 438 (622)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~ 438 (622)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|...|++++|+..|+++.+ ..|+. ..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~---~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR---LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---HCcCCCcHHHHHH
Confidence 344455556666666666666666542 22 13455555666666666666666666665 33432 1233
Q ss_pred HHHHHHhc------------------cCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 006997 439 SILSACSH------------------SGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMPVE 499 (622)
Q Consensus 439 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 499 (622)
.+..++.. .|++++|...|+++.+. .|+ ...+.+......-.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~------------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRL------------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHH-------------
Confidence 33333332 34555555555555532 332 11111111100000000
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChHHHHHHHHHhhhCCCccC
Q 006997 500 VQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST---GNYILMANLFTSAGMWKEAATARGLMDDRRLTKE 570 (622)
Q Consensus 500 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 570 (622)
......++..+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++...
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01113456678899999999999999999999876 5799999999999999999999999988766443
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=7.8e-11 Score=123.15 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=130.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 006997 365 SNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSI 440 (622)
Q Consensus 365 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 440 (622)
.+..+++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|++.|++..+ +.|+ ...|..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 3456677777777777777777777776653 3456788888888888888889888888887 6676 5778888
Q ss_pred HHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCC
Q 006997 441 LSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHN 517 (622)
Q Consensus 441 l~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 517 (622)
..++...|++++|++.|+++.+. .| +...+..+..+|.+.|++++|++.|+++. ..| +...+..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 88899999999999999888854 55 47788888899999999999999998876 344 47788889999999999
Q ss_pred HHHHHHHHHHHHccCC
Q 006997 518 VELGEYAAKNLLTLNP 533 (622)
Q Consensus 518 ~~~a~~~~~~~~~~~p 533 (622)
+++|.+.+++++++.|
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 9999999998887654
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.22 E-value=1.4e-09 Score=99.42 Aligned_cols=243 Identities=10% Similarity=0.023 Sum_probs=164.8
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 006997 275 MYTKCGDLELARRVFDAVLEKSV-FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKE 353 (622)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 353 (622)
-..-.|++..++.-...+...+. ..-.-+.++|...|++... ..-.|....+..+...+ ..+ +..
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~ 87 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIE 87 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHH
Confidence 35556888888776555543332 2333355788888887642 12234443444444433 222 566
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 006997 354 IEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDK-----DLAVWSAMINGYAIHGMGDQALNLFYKMQHVE 428 (622)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 428 (622)
.+++....+ +++......+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 677666554 445555567888888999999999999887432 345677788899999999999999999988
Q ss_pred CCCC-----CHHHHHHHHHH--HhccC--chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-
Q 006997 429 GLKP-----DAVVYTSILSA--CSHSG--MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPV- 498 (622)
Q Consensus 429 ~~~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 498 (622)
..| +..+...+..+ ....| ++.+|..+|+++... .|+..+-..+..++.+.|++++|.+.++.+..
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677 35566666655 33334 899999999998754 56533434455588899999999999886541
Q ss_pred -----------CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 499 -----------EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 499 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
+.++.++..++......|+ .|.++++++.+..|++|.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 3356667667666666777 888999999999998875543
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=1.2e-10 Score=108.69 Aligned_cols=222 Identities=13% Similarity=0.130 Sum_probs=153.1
Q ss_pred hccCChHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-------C----ChhHHHHH
Q 006997 343 AELGSLSKGKEIEEYIVLN-------GLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD-------K----DLAVWSAM 404 (622)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l 404 (622)
...|+++.|...+++..+. ..+....++..+...|...|++++|...|+++.+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 2233467788889999999999999999887652 1 23467788
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhc-----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhc----C-CCC-ChhH
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVE-----GLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNF----G-IEP-SIEH 472 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~~ 472 (622)
...|...|++++|...++++.+.. .-.|+ ..++..+...+...|++++|...++++.... + -.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 889999999999999999987711 11233 4678888889999999999999999887531 1 122 3566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCCc-HHhHHHHHHHHHhcC------CHHHHHHHHHHHHccCCCC
Q 006997 473 YLCLVDLLGRAGRFDLALKTIHEMP----------VEVQ-AQVWAPLLSACMKHH------NVELGEYAAKNLLTLNPGS 535 (622)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~ 535 (622)
+..+..+|...|++++|...++++. ..+. ...|..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788899999999999999998764 1222 233444444433322 2334444444444445666
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 536 TGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+.++..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998875
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=8.6e-09 Score=100.48 Aligned_cols=157 Identities=14% Similarity=-0.040 Sum_probs=72.4
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCC----chhHHHHHH
Q 006997 204 GGYVNVGNVNEAFGLCNQMRRMSVTPDLV----VFLNLILGCAQVGNLFLALSMHSLLLKSGY-NNE----DPLDNLLVS 274 (622)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~ 274 (622)
..+...|++++|...+++........+.. .+..+...+...|+++.|...+++.....- ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445666666666666655532111111 233444445555666666666555543210 011 112333444
Q ss_pred HHHhcCCHHHHHHHHhhcCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHHHH
Q 006997 275 MYTKCGDLELARRVFDAVLE----------K-SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVR--P--NEATLATTL 339 (622)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~~~~~ll 339 (622)
.+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 45555555555555544321 0 1123444555555556666666655555432111 0 122344444
Q ss_pred HHHhccCChHHHHHHHHHHHH
Q 006997 340 SACAELGSLSKGKEIEEYIVL 360 (622)
Q Consensus 340 ~~~~~~~~~~~a~~~~~~~~~ 360 (622)
..+...|++++|...++....
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 455555555555555555543
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=2.3e-10 Score=107.12 Aligned_cols=222 Identities=9% Similarity=-0.028 Sum_probs=140.3
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 006997 281 DLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKT----SVRPN-EATLATTLSACAELGSLSKGKEIE 355 (622)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 355 (622)
++++|...|.+. +..|...|++++|+..|.+..+. |-.++ ..+|..+...|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478887776653 66788888999888888877653 21111 346666777777777777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHHhHHhcCCCCC-
Q 006997 356 EYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIH-GMGDQALNLFYKMQHVEGLKPD- 433 (622)
Q Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~p~- 433 (622)
+.+.+. +...|+...+ ..+++.+...|... |++++|+..|++..+ +.|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~---~~~~~ 151 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGE---WYAQD 151 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HHHHT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---HHHhC
Confidence 666542 1122222222 12455666777775 888888888887766 2221
Q ss_pred ------HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc
Q 006997 434 ------AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSI-----EHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ 501 (622)
Q Consensus 434 ------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 501 (622)
..++..+...+...|++++|+..|+++.....-.+.. ..+..+..++...|++++|+..+++.. ..|+
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2457777888888888888888888887541111111 146667778888888888888888875 3443
Q ss_pred HH------hHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 006997 502 AQ------VWAPLLSACM--KHHNVELGEYAAKNLLTLNPGSTGNYILM 542 (622)
Q Consensus 502 ~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (622)
.. .+..++.++. ..+++++|+..|++++.++|.....+..+
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 21 2344555554 34678888888888888888554444433
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=5.5e-11 Score=98.67 Aligned_cols=122 Identities=15% Similarity=0.039 Sum_probs=103.6
Q ss_pred HHHHHhccCchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcC
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHH 516 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 516 (622)
|...+...|++++|+..++... ...|+ ...+..+...|.+.|++++|++.|+++. .+.+..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999999877 33553 5556678999999999999999999987 4556889999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHH-HHHhhh
Q 006997 517 NVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATA-RGLMDD 564 (622)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 564 (622)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 587766
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=1.5e-10 Score=121.91 Aligned_cols=167 Identities=11% Similarity=-0.067 Sum_probs=115.9
Q ss_pred HhcCChHHHHHHhccCC-----------CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHh
Q 006997 378 SKCGRINKAKEVFERVP-----------DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACS 445 (622)
Q Consensus 378 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~ 445 (622)
...|++++|.+.|++.. ..+...+..+...+...|++++|+..|+++.+ ..|+ ...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE---RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCcchHHHHHHHHHHHH
Confidence 55677777777776654 23445666677777777777777777777776 4454 456777777777
Q ss_pred ccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHH
Q 006997 446 HSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGE 522 (622)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 522 (622)
..|++++|+..|+++.+. .| +...+..+..+|.+.|++++ ++.|+++. .+.+...|..++.++...|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777744 44 46667777777777777777 77777765 3334667777777777778888888
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006997 523 YAAKNLLTLNPGSTGNYILMANLFTSAGM 551 (622)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (622)
..|+++++++|+++.++..++.++...|+
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888777777777777777777766544
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.17 E-value=3.6e-10 Score=105.36 Aligned_cols=173 Identities=8% Similarity=-0.047 Sum_probs=139.9
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhc
Q 006997 386 AKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNF 464 (622)
Q Consensus 386 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 464 (622)
....+......+...+..+...+...|++++|...|+++.+ ..|+ ...+..+..++...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 33444444444555666777888899999999999999988 6675 567888899999999999999999988744
Q ss_pred CCCCChhHHHHH-HHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--CchH
Q 006997 465 GIEPSIEHYLCL-VDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS--TGNY 539 (622)
Q Consensus 465 ~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 539 (622)
.|+....... ...+.+.++.++|+..+++.. .+.+...+..+...+...|++++|+..++++++.+|++ +.++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 5665443333 334677788888999998876 45568889999999999999999999999999999987 8899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 540 ILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999987654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=2.3e-09 Score=97.93 Aligned_cols=240 Identities=11% Similarity=0.022 Sum_probs=167.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH
Q 006997 305 GGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRIN 384 (622)
Q Consensus 305 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 384 (622)
+-..-.|++..++.-..++.. ........-+.+++...|++... ....|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 445567888888874433221 22223333455777777776531 112233334444433 33333
Q ss_pred HHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHh
Q 006997 385 KAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSM 460 (622)
Q Consensus 385 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 460 (622)
|...|++... ++..++..+..++...|++++|++++.+... .+-.++ ...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6677776553 4555666788899999999999999999876 332223 567888899999999999999999999
Q ss_pred HHhcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 461 QSNFGIEP-----SIEHYLCLVDL--LGRAG--RFDLALKTIHEMP-VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 461 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
.+. .| +..+...|+.+ ....| ++.+|..+|+++. ..|+..+...++.++.+.|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 854 67 34555556555 33334 9999999999987 445533334445588899999999999998887
Q ss_pred c----------CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 531 L----------NPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 531 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
+ +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 6 58899999888888888897 89999999987543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=7.1e-10 Score=90.07 Aligned_cols=128 Identities=17% Similarity=0.217 Sum_probs=89.6
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHh
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMK 514 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 514 (622)
+..+...+...|++++|..+++++... . +.+...+..++..+...|++++|..+++++. .+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555556666666666666666543 1 2245555566666666666666666666654 23345567777778888
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 515 HHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 515 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
.|++++|...++++++..|+++..+..++.++.+.|++++|.+.++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888876643
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=2.4e-10 Score=97.95 Aligned_cols=158 Identities=11% Similarity=0.008 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDL 479 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 479 (622)
+......+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|+..++++... .|++..+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD---ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH---HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 34445566677777777777777665 4454 456666777777777777777777776643 3333332222211
Q ss_pred -HHhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--CchHHHHHHHHHhcCChHH
Q 006997 480 -LGRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS--TGNYILMANLFTSAGMWKE 554 (622)
Q Consensus 480 -~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 554 (622)
+...+...+|+..+++.. . +.+...+..+..++...|++++|+..++++++.+|+. +.++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233345677777665 3 3457888999999999999999999999999999875 5589999999999999999
Q ss_pred HHHHHHHhhh
Q 006997 555 AATARGLMDD 564 (622)
Q Consensus 555 A~~~~~~~~~ 564 (622)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 98
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.16 E-value=4.3e-11 Score=98.64 Aligned_cols=102 Identities=8% Similarity=-0.086 Sum_probs=91.9
Q ss_pred CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 465 GIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 465 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
.+.| +...+..+...+.+.|++++|+..|+++. .+.+...|..++.++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4456 46677788899999999999999999987 45568899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 542 MANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
++.+|.+.|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
No 99
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.15 E-value=1.6e-10 Score=95.52 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=91.5
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 456 FFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 456 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
.++++. .+.| +...+..+...+.+.|++++|+..|+++. .+.+...|..++.++...|++++|+..++++++++
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444 3455 45667778888999999999999998876 45568889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 533 PGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
|+++.++..++.+|...|++++|.+.|++..+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998774
No 100
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=8e-10 Score=101.72 Aligned_cols=203 Identities=11% Similarity=0.027 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC--CC----hhH
Q 006997 330 PNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESN---RQVQTSLIHMFSKCGRINKAKEVFERVPD--KD----LAV 400 (622)
Q Consensus 330 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~ 400 (622)
.+...+..+...+...|++++|...|+.+.+.. |.+ ...+..+..+|.+.|++++|...|++..+ |+ ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888999999999999999998875 333 67788899999999999999999998864 32 345
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChh
Q 006997 401 WSAMINGYAI--------HGMGDQALNLFYKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIE 471 (622)
Q Consensus 401 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 471 (622)
+..+..++.. .|++++|+..|+++.+ ..|+.. ....+ ..+..+... ...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID---RYPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH---HCTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHH---HCcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 6677788888 9999999999999998 556532 22111 111111110 012
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCC
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLLSACMKH----------HNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~ 536 (622)
.+..+...|.+.|++++|+..++++. ..|+ ...+..++.++... |++++|+..++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 24557778888888888888888765 2232 44677777777755 899999999999999999886
Q ss_pred c---hHHHHHHHHHhcCChHHH
Q 006997 537 G---NYILMANLFTSAGMWKEA 555 (622)
Q Consensus 537 ~---~~~~l~~~~~~~g~~~~A 555 (622)
. +...+..++.+.|+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4 445556666666665543
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.12 E-value=3.5e-10 Score=90.42 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 471 EHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
..+......|.+.|++++|++.|+++. .+.+...|..++.++...|++++|+..++++++++|+++.+|..+|.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344455555556666666666665554 233455566666666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHhhh
Q 006997 549 AGMWKEAATARGLMDD 564 (622)
Q Consensus 549 ~g~~~~A~~~~~~~~~ 564 (622)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6666666666666654
No 102
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=1.5e-09 Score=101.11 Aligned_cols=132 Identities=7% Similarity=0.006 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhHHhc------CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhc------C
Q 006997 399 AVWSAMINGYAIHGMGDQALNLFYKMQHVE------GLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNF------G 465 (622)
Q Consensus 399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~ 465 (622)
.++..+...|...|++++|...++++.+ . +..|+ ..++..+..++...|++++|...++++.... .
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 206 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALE-IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGS 206 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3556666677777777777777777766 2 11333 3567778888888899999988888876431 1
Q ss_pred CCC-ChhHHHHHHHHHHhcC------ChHHHHHHHHhCC-CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 006997 466 IEP-SIEHYLCLVDLLGRAG------RFDLALKTIHEMP-VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTL 531 (622)
Q Consensus 466 ~~p-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 531 (622)
..+ ....+..+...+...+ .+.++...++... ..|+ ..++..++..+...|++++|...++++++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 207 VNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122 2334444444443333 3445555555554 2233 557888999999999999999999999875
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=2.2e-09 Score=94.65 Aligned_cols=121 Identities=11% Similarity=-0.033 Sum_probs=53.9
Q ss_pred HHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcC
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHH 516 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 516 (622)
+..++...|++++|+..|++..+. .| +...+..+..+|...|++++|+..|+++. .+.+...|..++.++...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 444555555555555555555432 23 34444555555555555555555555543 2223444544544443332
Q ss_pred --CHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 517 --NVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 517 --~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+.+.+...++++....| ....+..++.++...|++++|+..|++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22333344444332222 112334444555555555555555555543
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.08 E-value=1.3e-09 Score=112.86 Aligned_cols=158 Identities=10% Similarity=0.078 Sum_probs=125.1
Q ss_pred cCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHH
Q 006997 380 CGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 380 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+ ..|+ ...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788999999998874 3567888899999999999999999999988 6665 6788889999999999999999
Q ss_pred HHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 006997 456 FFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKH---HNVELGEYAAKNLL 529 (622)
Q Consensus 456 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 529 (622)
.+++..+. .| +...+..+..+|.+.|++++|.+.++++. .+.+...+..+...+... |+.++|.+.+++++
T Consensus 79 ~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999865 45 57888899999999999999999999886 344577888999999999 99999999999999
Q ss_pred ccCCCCCchHHHHH
Q 006997 530 TLNPGSTGNYILMA 543 (622)
Q Consensus 530 ~~~p~~~~~~~~l~ 543 (622)
+.+|++...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 99999988888776
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.07 E-value=1.3e-09 Score=87.14 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=99.2
Q ss_pred CCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhH
Q 006997 430 LKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVW 505 (622)
Q Consensus 430 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 505 (622)
+.|+ ...+......|.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|+..++++. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 5665 356778888999999999999999998854 45 67888899999999999999999999886 45557889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
..++.++...|++++|++.|+++++++|+++.++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999998888764
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1e-08 Score=90.63 Aligned_cols=162 Identities=10% Similarity=-0.050 Sum_probs=133.4
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccC----chHHHHHHHHHhHHhcCCCCChh
Q 006997 396 KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSG----MVDDGLSFFKSMQSNFGIEPSIE 471 (622)
Q Consensus 396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~ 471 (622)
.++..+..+...|...+++++|++.|++..+ .| +...+..+...|.. + ++++|.++|++.... -++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~ 86 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKS 86 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHH
Confidence 4566677777778888899999999999887 43 56677777778877 6 899999999998743 3677
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHhCC-CCCc---HHhHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchH
Q 006997 472 HYLCLVDLLGR----AGRFDLALKTIHEMP-VEVQ---AQVWAPLLSACMK----HHNVELGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 472 ~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~ 539 (622)
.+..|...|.. .+++++|++++++.. ..|. +..+..|...|.. .++.++|...++++.++ |+++..+
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 78888888877 889999999999887 3332 7888899999988 88999999999999998 6688899
Q ss_pred HHHHHHHHhc-C-----ChHHHHHHHHHhhhCCC
Q 006997 540 ILMANLFTSA-G-----MWKEAATARGLMDDRRL 567 (622)
Q Consensus 540 ~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 567 (622)
..|+.+|... | ++++|...|++..+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999864 4 99999999999987543
No 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.05 E-value=1.4e-09 Score=89.30 Aligned_cols=100 Identities=13% Similarity=-0.028 Sum_probs=86.7
Q ss_pred CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 006997 466 IEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILM 542 (622)
Q Consensus 466 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (622)
+.| +...+..+...+.+.|++++|+..|+++. .+.+...|..++.++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344 34556667788888999999999998876 445677899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhC
Q 006997 543 ANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+.+|...|++++|.+.|++..+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=3.6e-09 Score=93.33 Aligned_cols=178 Identities=8% Similarity=0.036 Sum_probs=123.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCH
Q 006997 335 LATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMG 414 (622)
Q Consensus 335 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (622)
+......+...|++++|...|+.+.+.. |.+...+.. ...... ..........+..+|...|++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~-----~~~~~~----------~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYW-----TNVDKN----------SEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHH-----HHSCTT----------SHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHH-----hhhcch----------hhhhHHHHHHHHHHHHHCCCH
Confidence 3344455667778888888887777654 112221111 000000 000122334478889999999
Q ss_pred HHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC--hHHHH
Q 006997 415 DQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGR--FDLAL 490 (622)
Q Consensus 415 ~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~ 490 (622)
++|+..|++..+ ..|+ ...+..+..++...|++++|+..|+++.+. .| +...+..+..+|...|. .+.+.
T Consensus 71 ~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 71 DKAYLFYKELLQ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999998 6675 678899999999999999999999999965 56 57888888888876654 45667
Q ss_pred HHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 491 KTIHEMP-VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 491 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
..++... ..|....+...+.++...|++++|+..|+++++++|+
T Consensus 145 ~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 145 TDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7777766 2233334556677777889999999999999999995
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=9.1e-09 Score=83.38 Aligned_cols=130 Identities=21% Similarity=0.308 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVD 478 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 478 (622)
.|..+...+...|++++|..+++++.+ ..| +...+..+...+...|++++|...++++... . +.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH---cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHH
Confidence 466777888889999999999999887 334 4667788888888999999999999998854 1 345677888889
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 479 LLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 479 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
.+...|++++|.++++++. .+.+...+..++..+...|++++|...++++++.+|+
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999998876 3445778888999999999999999999999998885
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=2.3e-09 Score=101.14 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=145.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHH
Q 006997 310 LGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAE-LGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKE 388 (622)
Q Consensus 310 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 388 (622)
.|++++|.+++++..+... . .+.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566777777776654311 1 1222 46667666666544 456777888888888
Q ss_pred HhccCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC--CCC--HHHHHHHHHHHhccCchHHHHH
Q 006997 389 VFERVPD-----KD----LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGL--KPD--AVVYTSILSACSHSGMVDDGLS 455 (622)
Q Consensus 389 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~~~~~ll~~~~~~g~~~~a~~ 455 (622)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+...- .|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876542 11 246777888888889999999999887762111 111 2467777888888 99999999
Q ss_pred HHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCc----HHhHHHHHHHHHhcCCHHHHHH
Q 006997 456 FFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP-V---EVQ----AQVWAPLLSACMKHHNVELGEY 523 (622)
Q Consensus 456 ~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~a~~ 523 (622)
.|++....+.-..+ ..++..+...|.+.|++++|+..++++. . .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887753211111 4567778888889999999999888775 1 111 2255666667777899999999
Q ss_pred HHHHHHccCCCCCchH-----HHHHHHHHhcCChHHHHH
Q 006997 524 AAKNLLTLNPGSTGNY-----ILMANLFTSAGMWKEAAT 557 (622)
Q Consensus 524 ~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~ 557 (622)
.+++++ +.|...... ..++..+ ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999998 888766542 2334444 5677766665
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=6.4e-09 Score=92.25 Aligned_cols=124 Identities=14% Similarity=0.020 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 006997 403 AMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR 482 (622)
Q Consensus 403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 482 (622)
.+...+...|++++|+..|++. +.|+...+..+..++...|++++|+..+++..... +.+...+..+..+|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHH
Confidence 3344445555555555555433 23444455555555555555555555555554320 1234444445555555
Q ss_pred cCChHHHHHHHHhCC-CCC-c----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 483 AGRFDLALKTIHEMP-VEV-Q----------------AQVWAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
.|++++|++.++++. ..| + ...+..++.++...|++++|...+++++++.|
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 555555555554442 111 1 13444444455555555555555555555544
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=2.2e-09 Score=101.21 Aligned_cols=218 Identities=10% Similarity=-0.015 Sum_probs=143.6
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 006997 279 CGDLELARRVFDAVLEKSVFLWTSMIGGYAQ-LGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEY 357 (622)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 357 (622)
.|++++|.+++++..+... ..+.+ .++++.|...|.+. ...|...|++++|...+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-------~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-------TSFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CCSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-------ccccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 4667777777776532110 01222 56777777777764 3456778889999888887
Q ss_pred HHHcCC---C--CchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----hhHHHHHHHHHHHcCCHHHHHHHHHH
Q 006997 358 IVLNGL---E--SNRQVQTSLIHMFSKCGRINKAKEVFERVPD-----KD----LAVWSAMINGYAIHGMGDQALNLFYK 423 (622)
Q Consensus 358 ~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 423 (622)
+.+... . ....+++.+..+|.+.|++++|...|++..+ .+ ..++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 765421 1 1135777788888888999999999887652 12 2466777778877 999999999988
Q ss_pred hHHhcCCCC---C----HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHH
Q 006997 424 MQHVEGLKP---D----AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKT 492 (622)
Q Consensus 424 ~~~~~~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 492 (622)
..+ +.| + ..++..+...+...|++++|+..|++......-.++ ...+..++.++...|++++|...
T Consensus 141 Al~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 141 AAA---VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHH---HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHH---HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876 222 1 346777888888999999999999888754211111 23556667777888999999999
Q ss_pred HHhCCCCCc------HHhHHHHHHHHHhcCCHHHHHH
Q 006997 493 IHEMPVEVQ------AQVWAPLLSACMKHHNVELGEY 523 (622)
Q Consensus 493 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 523 (622)
+++....|+ ...+..++.++ ..|+.+....
T Consensus 218 ~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 987653332 11234444444 4566655544
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=3.3e-08 Score=92.54 Aligned_cols=161 Identities=8% Similarity=-0.033 Sum_probs=123.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHH
Q 006997 404 MINGYAIHGMGDQALNLFYKMQHVEGLKPDAV----VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLC 475 (622)
Q Consensus 404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 475 (622)
.+..+...|++++|.+++++..+.....|+.. .+..+...+...|++++|+..++++.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677889999999999999887222223321 2334666777888999999999998863111223 336888
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-----C---CCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHH
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP-----V---EVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS------TGNYI 540 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~-----~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 540 (622)
+...|...|++++|+..++++. . .+. ..++..++..|...|++++|...+++++++.+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999998875 1 111 3477889999999999999999999999865433 56899
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHhhh
Q 006997 541 LMANLFTSAGM-WKEAATARGLMDD 564 (622)
Q Consensus 541 ~l~~~~~~~g~-~~~A~~~~~~~~~ 564 (622)
.+|.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999998864
No 114
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2e-08 Score=105.59 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=147.8
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHc
Q 006997 343 AELGSLSKGKEIEEYIV--------LNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIH 411 (622)
Q Consensus 343 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 411 (622)
...|++++|.+.++.+. +.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788999999888887 332 55667888888899999999999999988774 4667888899999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 006997 412 GMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 489 (622)
|++++|++.|+++.+ ..|+ ...+..+..++.+.|++++ ++.|+++.+. .| +...+..+..+|.+.|++++|
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 6675 5778889999999999999 9999999854 55 578889999999999999999
Q ss_pred HHHHHhCC-CCCc-HHhHHHHHHHHHhcCC-----HHHHHHHHHHHHccCCCCCchH
Q 006997 490 LKTIHEMP-VEVQ-AQVWAPLLSACMKHHN-----VELGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 490 ~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~~ 539 (622)
++.++++. ..|+ ...|..+..++...++ .+...+..+....+.++++...
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99999987 5555 6678788887766554 3344444444445555555543
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=1.8e-08 Score=93.73 Aligned_cols=133 Identities=13% Similarity=-0.002 Sum_probs=113.3
Q ss_pred CC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHhHHH-
Q 006997 432 PD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQVWAP- 507 (622)
Q Consensus 432 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~- 507 (622)
|+ ...+..+...+...|++++|...|+++... .| +...+..+...|.+.|++++|...++++. ..|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 44 466778888899999999999999999865 55 57888899999999999999999999997 5566443333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
....+...++.+.|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 333466778888999999999999999999999999999999999999999999988544
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=1.4e-08 Score=104.98 Aligned_cols=147 Identities=13% Similarity=-0.020 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 006997 412 GMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 489 (622)
|++++|++.++++.+ ..|+ ...+..+...+...|++++|.+.+++..+ ..| +...+..+..+|...|++++|
T Consensus 3 g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR---HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 444555555555444 3333 34444455555555555555555555542 233 244444555555555555555
Q ss_pred HHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc---CChHHHHHHHHHhhh
Q 006997 490 LKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA---GMWKEAATARGLMDD 564 (622)
Q Consensus 490 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 564 (622)
.+.+++.. .+.+...+..++.++...|++++|.+.++++++++|+++..+..++.++... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 55555443 2223444555555555555555555555555555555555555555555555 555555555554433
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.93 E-value=1.9e-07 Score=86.37 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC---
Q 006997 412 GMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVD--DGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGR--- 485 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 485 (622)
+++++++.+++++.+ ..| |..+|..-..++.+.|.++ ++++.++++.+. . +-|...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~---~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLS---SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccch
Confidence 566777777777776 444 3556666666666666666 777777777754 1 2255666665556655555
Q ss_pred ---hHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCH-HHHHHHHHHHHccC---CCCCchHHHHHHHHHhcCChHHHH
Q 006997 486 ---FDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNV-ELGEYAAKNLLTLN---PGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 486 ---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
++++++.++++. .+.|...|+.+...+.+.|.. +.....++++++++ |.++.++..++++|.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 677777777665 445567777777777776663 44556777776665 667777888888888888888888
Q ss_pred HHHHHhhh
Q 006997 557 TARGLMDD 564 (622)
Q Consensus 557 ~~~~~~~~ 564 (622)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887765
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=1.9e-08 Score=85.98 Aligned_cols=156 Identities=13% Similarity=0.038 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-H
Q 006997 369 VQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSA-C 444 (622)
Q Consensus 369 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~-~ 444 (622)
....+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..++++.+ ..|+.......... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHH
Confidence 344566677778888888888887774 3556777777888888888888888888776 44443322222111 1
Q ss_pred hccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc---HHhHHHHHHHHHhcCCHH
Q 006997 445 SHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ---AQVWAPLLSACMKHHNVE 519 (622)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~~~~~~ 519 (622)
...+....|+..+++..+. .| +...+..+..++...|++++|+..++++. ..|+ ...+..++..+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1222233467778877754 45 47778888888888888888888888765 4443 457888888888888888
Q ss_pred HHHHHHHHHHc
Q 006997 520 LGEYAAKNLLT 530 (622)
Q Consensus 520 ~a~~~~~~~~~ 530 (622)
+|...|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88888887764
No 119
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=9.6e-09 Score=82.23 Aligned_cols=96 Identities=14% Similarity=0.024 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...+..+...+.+.|++++|+..|++.. .+.+...|..++.++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456667778888888888888888775 34457788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhC
Q 006997 548 SAGMWKEAATARGLMDDR 565 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~ 565 (622)
..|++++|.+.|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988774
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.89 E-value=2.6e-08 Score=84.16 Aligned_cols=128 Identities=6% Similarity=-0.018 Sum_probs=103.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSAC 512 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 512 (622)
..+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|+..+++.. .+.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566677777888888888888887754 13357777788888888888888888888775 344577888999999
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHH--HHHhcCChHHHHHHHHHhhh
Q 006997 513 MKHHNVELGEYAAKNLLTLNPGSTGNYILMAN--LFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 564 (622)
...|++++|...+++++++.|+++..+..++. .+.+.|++++|.+.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999999888855544 48889999999999987754
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1.1e-08 Score=87.57 Aligned_cols=121 Identities=11% Similarity=0.058 Sum_probs=91.3
Q ss_pred hccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH-HHhcCCH--H
Q 006997 445 SHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA-CMKHHNV--E 519 (622)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~--~ 519 (622)
...|++++|...+++.... -+.+...+..+...|...|++++|+..++++. .+.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567777787788777654 13356777778888888888888888888765 33456677777777 7788888 9
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 520 LGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
+|+..++++++.+|+++.++..++.+|...|++++|...++++.+..+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999998888999999999999999999999998877543
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=3.7e-06 Score=84.27 Aligned_cols=338 Identities=10% Similarity=-0.022 Sum_probs=195.6
Q ss_pred CChHHHHHHHhhcCC--CCcchHHHHHHHHHcCCC-hhHHHHHHHHHHHC-CCCC-CHhHHHHHHHHHhc----cCChHH
Q 006997 179 GKVNEARSIFDEIGE--TSIVSWTTIIGGYVNVGN-VNEAFGLCNQMRRM-SVTP-DLVVFLNLILGCAQ----VGNLFL 249 (622)
Q Consensus 179 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~ 249 (622)
|+++.+..+|++... |++..|...+....+.++ .+....+|+..... |..| +...|...+..+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 789999999998876 788888888877766653 45566777776654 4333 55666666655432 356788
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHh-------------cCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHhcC-
Q 006997 250 ALSMHSLLLKSGYNNEDPLDNLLVSMYTK-------------CGDLELARRVFDAVL----EKSVFLWTSMIGGYAQLG- 311 (622)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~- 311 (622)
+.++|+..+......-..+|......-.. .+.+..|..+++.+. ..+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 88899988874221111222222111110 011222333333221 113345655554432221
Q ss_pred -C-----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 006997 312 -Y-----PSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINK 385 (622)
Q Consensus 312 -~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (622)
- .+.+..+|++++... +.+...|...+..+...|+.+.|..+++.+... |.+...+.. |....+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH
Confidence 1 345677888887753 345667777777778889999999999999887 444433322 222211111
Q ss_pred H-HHHhccCC------------CCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhc-cCchH
Q 006997 386 A-KEVFERVP------------DKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSH-SGMVD 451 (622)
Q Consensus 386 A-~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~g~~~ 451 (622)
. ..+.+... ......|...+....+.++.+.|..+|+++ . .. ..+...|......-.. .++.+
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~-~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE-GVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS-CCCHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC-CCChHHHHHHHHHHHHHCCChH
Confidence 1 11111110 001234556666666677788888888887 3 11 1233344322222122 23688
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 452 DGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 452 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
.|..+|+...+.++ -++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 338 ~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888876532 234455666777777888888888888874 2466777777777777888888887777764
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=4.4e-08 Score=91.67 Aligned_cols=164 Identities=6% Similarity=-0.050 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCC-CCH----HHHHHHHHHHhccCchHHHHHHHHHhHHhcCC--CCC--h
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLK-PDA----VVYTSILSACSHSGMVDDGLSFFKSMQSNFGI--EPS--I 470 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 470 (622)
.+...+..+...|++++|.+.+++..+ .... ++. ..+..+...+...|++++|+..+++......- .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344456677888999999999988876 2211 111 12344556677889999999999988743111 111 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC----CCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------C
Q 006997 471 EHYLCLVDLLGRAGRFDLALKTIHEMP----VEVQ-----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG------S 535 (622)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 535 (622)
.+++.+...|...|++++|+..++++. ..|+ ..++..++..|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578888999999999999999998764 1122 257889999999999999999999999886542 1
Q ss_pred CchHHHHHHHHHhcCChHHH-HHHHHHhhh
Q 006997 536 TGNYILMANLFTSAGMWKEA-ATARGLMDD 564 (622)
Q Consensus 536 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 564 (622)
+.++..+|.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56789999999999999999 787887764
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.87 E-value=2.2e-08 Score=80.83 Aligned_cols=115 Identities=12% Similarity=0.062 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLS 510 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 510 (622)
...+..+...+...|++++|...|+++.. ..| +...+..+..+|...|++++|++.++++. .+.+...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45677777777888888888888887773 244 56777777888888888888888887765 3445677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 006997 511 ACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGM 551 (622)
Q Consensus 511 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 551 (622)
++...|++++|...++++++++|++...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999999888999999999888774
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=5.8e-08 Score=86.78 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCChHHHHHHhccCCC--CCh-h---HHH
Q 006997 331 NEATLATTLSACAELGSLSKGKEIEEYIVLNGLES--NRQVQTSLIHMFSKCGRINKAKEVFERVPD--KDL-A---VWS 402 (622)
Q Consensus 331 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~ 402 (622)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+ |+. . .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999998865321 235778889999999999999999998763 332 1 444
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHhHHh
Q 006997 403 AMINGYAI------------------HGMGDQALNLFYKMQHVEGLKPDAV-VYTSILSACSHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 403 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 463 (622)
.+..++.. .|++++|+..|+++.+ ..|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~----------l~~~~~~~~-- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKR----------LVFLKDRLA-- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHH----------HHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHH----------HHHHHHHHH--
Confidence 45555554 5789999999999998 667643 2221111 001111111
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 006997 464 FGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 464 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 538 (622)
.....+...|.+.|++++|+..++++. ..|+ ...+..++.++.+.|+.++|+..++++....|++...
T Consensus 148 -------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 112346788899999999999999876 3333 2568889999999999999999999999999976554
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.86 E-value=1.6e-08 Score=96.46 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...|..+..+|.+.|++++|+..++++. .+.+...|..++.++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677888888999999999999998876 44567889999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHhhh
Q 006997 548 SAGMWKEA-ATARGLMDD 564 (622)
Q Consensus 548 ~~g~~~~A-~~~~~~~~~ 564 (622)
+.|++++| ...+++|..
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 456666643
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=8.8e-09 Score=95.54 Aligned_cols=190 Identities=9% Similarity=-0.071 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHH
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILS 442 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~ 442 (622)
...+..+...+.+.|++++|...|++... .+...|..+..+|...|++++|+..+++..+ ..|+ ...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 34455556666666666666666665542 2556677777777788888888888888776 5564 566777778
Q ss_pred HHhccCchHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 006997 443 ACSHSGMVDDGLSFFKSMQSNFGIEPSI-EHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELG 521 (622)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 521 (622)
++...|++++|...|+++.+. .|+. ..+...+....+..+...... .......++......+.. + ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 888888888888888877643 2311 111111111111111111111 222222334443333332 2 36899999
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhc-CChHHHHHHHHHhhhC
Q 006997 522 EYAAKNLLTLNPGSTGNYILMANLFTSA-GMWKEAATARGLMDDR 565 (622)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 565 (622)
.+.++++++++|++......+...+.+. +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998888888888888777 7899999999988763
No 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.83 E-value=5.2e-08 Score=82.13 Aligned_cols=103 Identities=10% Similarity=0.018 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
..+..+...+...|++++|+..|++.... .| +...|..+..+|.+.|++++|+..++++. .+.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555555555566666666666655533 23 34455555555555555555555555543 22234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
+...|++++|+..++++++++|+++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 117 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAM 117 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 55555555555555555555555555433
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.83 E-value=1.1e-08 Score=81.01 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA 549 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (622)
.+..+...+.+.|++++|+..++++. .+.+...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35556778888999999999998876 3446788999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhhCCC
Q 006997 550 GMWKEAATARGLMDDRRL 567 (622)
Q Consensus 550 g~~~~A~~~~~~~~~~~~ 567 (622)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999876443
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=6.5e-08 Score=76.95 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++++|..+++++. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 356667777778888888888888887754 13356677778888888888888888888765 34456778888889
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAG 550 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 550 (622)
+...|++++|...++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998888887654
No 131
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.83 E-value=1.1e-07 Score=84.20 Aligned_cols=123 Identities=13% Similarity=0.051 Sum_probs=72.0
Q ss_pred HHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc
Q 006997 438 TSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKH 515 (622)
Q Consensus 438 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 515 (622)
..+...+...|++++|...|+++. .|+...+..+...|.+.|++++|++.+++.. .+.+...|..++.++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344445555666666666665442 4455556666666666666666666666554 233345555666666666
Q ss_pred CCHHHHHHHHHHHHccCCCCC----------------chHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 516 HNVELGEYAAKNLLTLNPGST----------------GNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
|++++|+..+++++++.|++. .++..++.+|.+.|++++|.+.+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666666555555 55666666666666666666666665543
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.82 E-value=4e-08 Score=79.00 Aligned_cols=117 Identities=8% Similarity=-0.055 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|++.+++.. .+.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 455667777778888888888888887754 13356777788888888888888888888775 34457788888999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMW 552 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (622)
+...|++++|...+++++++.|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998875
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=4e-06 Score=84.01 Aligned_cols=372 Identities=11% Similarity=-0.022 Sum_probs=201.7
Q ss_pred hcC-CchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC-hhHH
Q 006997 7 NNG-SFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD-FVSS 84 (622)
Q Consensus 7 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A 84 (622)
+.| +...|..+|+.+... .|. ++.+.+..+|+..+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888777663 333 7789999999998875 4788888888887777663 3445
Q ss_pred HHHhccCCC----CCCCcchHHHHHHHHH----hCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHH
Q 006997 85 RKVLDEMPV----RLRSVVSWNSIISAHS----RACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVY 156 (622)
Q Consensus 85 ~~~~~~~~~----~~~~~~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~ 156 (622)
..+|+.... ...+...|...+..+. .+++.+.+.++|++.+.. |.. .+..+...+. ...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~---------~fE 134 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFE---------NFE 134 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHH---------HHH
Confidence 556665332 1345677777776543 346678889999998862 221 1122222211 000
Q ss_pred HhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHcCCC-------hhHHHHHHHHHHHC
Q 006997 157 KLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE----TSIVSWTTIIGGYVNVGN-------VNEAFGLCNQMRRM 225 (622)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~ 225 (622)
... +..+...++.-.. +.+..|..+++.+.. .+...|...+.--...+. .+.+..+|+++...
T Consensus 135 ~~~----~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 135 LEL----NKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp HHH----CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHh----ccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 000 1111111111111 122233333322211 233455555544332211 34566788887765
Q ss_pred CCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHH-HHHHhhcC--C-------C
Q 006997 226 SVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELA-RRVFDAVL--E-------K 295 (622)
Q Consensus 226 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~--~-------~ 295 (622)
. +.+...|...+..+...|+++.|..+++..... |.+...+.. |....+.++. ..+.+... . +
T Consensus 209 ~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 209 F-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp T-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------C
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence 2 445667777777778888999999999998888 444443332 2221111111 11111110 0 0
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCChHHHHHHHHHHHHcCCCCchhHHH
Q 006997 296 ---SVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACA-ELGSLSKGKEIEEYIVLNGLESNRQVQT 371 (622)
Q Consensus 296 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 371 (622)
....|...+....+.++.+.|..+|.+. ... ..+...|......-. ..++.+.|..+|+...+.- +.++..+.
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~ 358 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHH
Confidence 1234556666666667788888888877 321 223334432221111 1235778888887777653 33444555
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 006997 372 SLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQH 426 (622)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (622)
..++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666677777777777777774 2455666666655666777777776666653
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.80 E-value=1.4e-08 Score=83.76 Aligned_cols=116 Identities=13% Similarity=0.068 Sum_probs=94.6
Q ss_pred HHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 420 LFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 420 ~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
.|+++.. +.|+ ...+..+...+...|++++|+..|+++... .| +...|..+..+|...|++++|+..++++.
T Consensus 9 ~~~~al~---~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 9 TIAMLNE---ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp SHHHHTT---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHc---CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444 5564 456777888889999999999999998854 45 67788889999999999999999999876
Q ss_pred --CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 006997 498 --VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 498 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 541 (622)
.+.++..+..++.++...|++++|+..|++++++.|+++.....
T Consensus 83 ~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 34457788999999999999999999999999999988766443
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=3.4e-06 Score=77.95 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=163.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---
Q 006997 311 GYPSEAVNLFKRLLKTSVRPNE-ATLATTLSACAELG--SLSKGKEIEEYIVLNGLESNRQVQTSLIHMF----SKC--- 380 (622)
Q Consensus 311 ~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 380 (622)
...++|+.++.+++.. .|+. ..++.--..+...+ +++++...++.+.... |-+..+++.-..++ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3445778887777765 3433 34455555555666 7888888888777765 33444554443333 444
Q ss_pred CChHHHHHHhccCCC---CChhHHHHHHHHHHHcCCHH--HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCc-----
Q 006997 381 GRINKAKEVFERVPD---KDLAVWSAMINGYAIHGMGD--QALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGM----- 449 (622)
Q Consensus 381 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~----- 449 (622)
++++++.++++.+.+ ++..+|+.-.-.+...|.++ ++++.++++.+ ..| |...|+.-.......+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhh
Confidence 678888888887764 45667776666777778877 99999999998 445 45677776677777776
Q ss_pred -hHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHH-HHHHHHhCC-C----CCcHHhHHHHHHHHHhcCCHHHH
Q 006997 450 -VDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDL-ALKTIHEMP-V----EVQAQVWAPLLSACMKHHNVELG 521 (622)
Q Consensus 450 -~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~a 521 (622)
++++++.++++... .| |...|+.+...+.+.|+..+ +..+.+++. . ..++..+..++.++.+.|+.++|
T Consensus 201 ~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 201 TIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999998865 45 78888888888988888554 556777665 1 33567888899999999999999
Q ss_pred HHHHHHHHc-cCCCCCchHHHHHHH
Q 006997 522 EYAAKNLLT-LNPGSTGNYILMANL 545 (622)
Q Consensus 522 ~~~~~~~~~-~~p~~~~~~~~l~~~ 545 (622)
.++++.+.+ .+|.....|...+..
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhccChHHHHHHHHHHhh
Confidence 999999997 899887777766543
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=7.6e-08 Score=86.73 Aligned_cols=136 Identities=12% Similarity=-0.080 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC--hhHHHHHHHH
Q 006997 402 SAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS--IEHYLCLVDL 479 (622)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 479 (622)
..+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 3345566777777777777777665 3454444445555677777777777777655421 0 111 2345667777
Q ss_pred HHhcCChHHHHHHHHhCCCC---C--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 006997 480 LGRAGRFDLALKTIHEMPVE---V--QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMA 543 (622)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (622)
+.+.|++++|+..|++.... | ....+.....++.+.|+.++|...|++++..+|+ +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 77778888888877776411 3 2345666777777888888888888888888886 55555553
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.78 E-value=4.6e-08 Score=88.13 Aligned_cols=128 Identities=9% Similarity=-0.058 Sum_probs=104.8
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCc----HHhHHHHHHHH
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQ----AQVWAPLLSAC 512 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~ 512 (622)
...+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+ ...+..++.++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 34466778899999999999998874 356444666777889999999999999997764332 33677889999
Q ss_pred HhcCCHHHHHHHHHHHHccC--CC-CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 513 MKHHNVELGEYAAKNLLTLN--PG-STGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 513 ~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
...|++++|+..|+++.... |. .+.....++.++.++|+.++|...|+++....+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999998643 54 456889999999999999999999999988544
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.78 E-value=2.4e-08 Score=79.83 Aligned_cols=94 Identities=6% Similarity=-0.100 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-------hHHH
Q 006997 471 EHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTG-------NYIL 541 (622)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 541 (622)
..+..+...+.+.|++++|++.|+++. .+.+...|..++.++...|++++|+..++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 345567777777788888888887765 3444667888888888888888888888888888776543 5667
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 006997 542 MANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+|.++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888888888888887765
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.78 E-value=3.6e-08 Score=76.74 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG--STGNYILMAN 544 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 544 (622)
+...+..+...+...|++++|...++++. .+.+...|..++..+...|++++|...++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556667777777888888888887765 3445677888888999999999999999999999999 8999999999
Q ss_pred HHHhc-CChHHHHHHHHHhhhCCC
Q 006997 545 LFTSA-GMWKEAATARGLMDDRRL 567 (622)
Q Consensus 545 ~~~~~-g~~~~A~~~~~~~~~~~~ 567 (622)
++.+. |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887554
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=1e-08 Score=84.34 Aligned_cols=104 Identities=8% Similarity=-0.011 Sum_probs=84.8
Q ss_pred CCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhH
Q 006997 430 LKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVW 505 (622)
Q Consensus 430 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 505 (622)
+.|+ ...+..+...+.+.|++++|+..|+++... .| ++..|..+..+|...|++++|+..|+++. .+.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 5565 346777778888888999999999888854 55 57788888888999999999999998876 34457788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
..++.++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998643
No 141
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=5e-07 Score=79.65 Aligned_cols=159 Identities=9% Similarity=0.018 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCchhHH
Q 006997 295 KSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELG----SLSKGKEIEEYIVLNGLESNRQVQ 370 (622)
Q Consensus 295 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 370 (622)
.++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|...++...+.+ ++..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356666667777777777777777777776654 44555556666655 5 6777777777776654 45556
Q ss_pred HHHHHHHHh----cCChHHHHHHhccCCCCC-----hhHHHHHHHHHHH----cCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 006997 371 TSLIHMFSK----CGRINKAKEVFERVPDKD-----LAVWSAMINGYAI----HGMGDQALNLFYKMQHVEGLKPDAVVY 437 (622)
Q Consensus 371 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~ 437 (622)
..|..+|.. .+++++|.+.|++..+.+ +..+..+...|.. .+++++|+..|++..+ ...+...+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~a~ 165 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS---LSRTGYAE 165 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---TSCTTHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---cCCCHHHH
Confidence 666666665 667777777777666432 4566666666766 6677777777777776 23344455
Q ss_pred HHHHHHHhcc-C-----chHHHHHHHHHhHHh
Q 006997 438 TSILSACSHS-G-----MVDDGLSFFKSMQSN 463 (622)
Q Consensus 438 ~~ll~~~~~~-g-----~~~~a~~~~~~~~~~ 463 (622)
..+...|... | ++++|..+|++..+.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5566665432 2 677777777777654
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=6.4e-08 Score=78.67 Aligned_cols=100 Identities=12% Similarity=-0.001 Sum_probs=85.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 468 PSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 468 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
.+...+..+...+...|++++|+..+++.. .+.+...|..++.++...|++++|+..++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 356777778888888888888888888765 344577888899999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHhhhCCC
Q 006997 546 FTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 546 ~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
|...|++++|...|++..+..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999999887443
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.74 E-value=4.2e-08 Score=80.36 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=91.1
Q ss_pred CCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhH
Q 006997 430 LKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVW 505 (622)
Q Consensus 430 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 505 (622)
..|+ ...+..+...+...|++++|...|+++... .| +...|..+..+|.+.|++++|+..++++. .+.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 4554 345666777888889999999999888854 44 67778888889999999999999998876 34457778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
..++.++...|++++|...+++++++.|+++........+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 88999999999999999999999999998887766554443
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=1.1e-07 Score=74.60 Aligned_cols=93 Identities=14% Similarity=0.000 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA 549 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (622)
.+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++..|+++..+..++.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444555555555555555555543 2233445555555555666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHhhh
Q 006997 550 GMWKEAATARGLMDD 564 (622)
Q Consensus 550 g~~~~A~~~~~~~~~ 564 (622)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 666666666665554
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=3.2e-07 Score=75.51 Aligned_cols=112 Identities=9% Similarity=-0.029 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAP 507 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 507 (622)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|+..+++.. .+.+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4556666667777777777777777776 33555 4566666777777777777777777654 2334666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
+..++...|++++|...++++++++|+++.++..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 77788888888888888888888888777777776666544
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=2.4e-06 Score=79.70 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=118.6
Q ss_pred HHHHHHhcCChHHHHHHhccCCCC---Ch------hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC-CCC----HHHHH
Q 006997 373 LIHMFSKCGRINKAKEVFERVPDK---DL------AVWSAMINGYAIHGMGDQALNLFYKMQHVEGL-KPD----AVVYT 438 (622)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~ 438 (622)
.+..+...|++++|...+++..+. +. ..+..+...+...+++++|+..|+++.+ ... .++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHH
Confidence 466778889999999998876532 11 1233456666777899999999999987 322 223 23688
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcC----CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-cHHhH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFG----IEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-------VEV-QAQVW 505 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~ 505 (622)
.+..+|...|++++|...|+++..... ..+ ...++..+...|.+.|++++|+..+++.. ..+ -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 899999999999999999999874211 111 13477889999999999999999998764 111 25678
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHcc
Q 006997 506 APLLSACMKHH-NVELGEYAAKNLLTL 531 (622)
Q Consensus 506 ~~l~~~~~~~~-~~~~a~~~~~~~~~~ 531 (622)
..++.++...| ++++|.+.+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999999 469999999999864
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=1.4e-07 Score=82.45 Aligned_cols=95 Identities=14% Similarity=0.014 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 471 EHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
..+..+..+|.+.|++++|+..++++. .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566778888888888888888888776 344577888999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHhhhC
Q 006997 549 AGMWKEAA-TARGLMDDR 565 (622)
Q Consensus 549 ~g~~~~A~-~~~~~~~~~ 565 (622)
.|+.+++. ..+..+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 99888887 556655443
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.7e-07 Score=74.79 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
..+......+.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|+..++++. .+.+...|..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45666777778888888888888887754 34 56778888888888888888888888776 34457788889999
Q ss_pred HHhcCCHHHHHHHHHHHHccC------CCCCchHHHHHHHHHh
Q 006997 512 CMKHHNVELGEYAAKNLLTLN------PGSTGNYILMANLFTS 548 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~ 548 (622)
+...|++++|+..++++++++ |+++.++..+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999998 8777777777666543
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=3.9e-07 Score=71.48 Aligned_cols=111 Identities=10% Similarity=-0.032 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSA 511 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 511 (622)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++.. .+.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345666777777788888888888887754 12356777778888888888888888888765 34457778888999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 512 CMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 512 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
+...|++++|...++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999888888877764
No 150
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.66 E-value=1.7e-07 Score=78.77 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=57.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 502 AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
...|..+..++...|++++|+..++++++++|+++.+|..+|.+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999988763
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-07 Score=76.69 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
+...+..+...+.+.|++++|...++++. . +.+...+..++..+...|++++|+..++++++..|+++.++..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 46778889999999999999999999875 3 346788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 006997 547 TSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (622)
.+.|++++|.+.+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.66 E-value=7.3e-08 Score=78.12 Aligned_cols=63 Identities=16% Similarity=-0.004 Sum_probs=58.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHcc-------CCCCCchH----HHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTL-------NPGSTGNY----ILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
..|..+..++...|++++|+..+++++++ +|+++..| +..+.++...|++++|+..|++..+-
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888999999999999999999999999 99999999 99999999999999999999999773
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=2.5e-07 Score=79.09 Aligned_cols=127 Identities=11% Similarity=0.042 Sum_probs=102.2
Q ss_pred HHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCh
Q 006997 409 AIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDL-LGRAGRF 486 (622)
Q Consensus 409 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~ 486 (622)
...|++++|+..+++..+ ..| +...+..+..+|...|++++|...|+++.... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHH---HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCc
Confidence 456788899999998887 445 46788889999999999999999999988652 3367778888888 7889998
Q ss_pred --HHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 487 --DLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 487 --~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
++|+..++++. .+.+...+..++..+...|++++|...+++++++.|+++....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999999886 3445778889999999999999999999999999998866543
No 154
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.65 E-value=9.7e-08 Score=76.60 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=70.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCCc-H---HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHHHH
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP-VEVQ-A---QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS---TGNYILMANLF 546 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 546 (622)
.+...+...|++++|...++++. ..|+ . ..+..++.++...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 35566677777777777777664 2233 2 467777888888888888888888888888887 66788888888
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 006997 547 TSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (622)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8889999999888888764
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.65 E-value=3.1e-07 Score=77.30 Aligned_cols=95 Identities=8% Similarity=-0.054 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...+..+...+.+.|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455556666666666666666666654 23345566666666666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHhhh
Q 006997 548 SAGMWKEAATARGLMDD 564 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~ 564 (622)
..|++++|.+.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666654
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=5.9e-07 Score=78.61 Aligned_cols=152 Identities=10% Similarity=-0.028 Sum_probs=96.4
Q ss_pred HcCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHhccCchHHHHHHHHHhHHhc---CCCC-ChhHHHHHHHHHHhcC
Q 006997 410 IHGMGDQALNLFYKMQHVEGLK-PDAVVYTSILSACSHSGMVDDGLSFFKSMQSNF---GIEP-SIEHYLCLVDLLGRAG 484 (622)
Q Consensus 410 ~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g 484 (622)
..|++++|.+.++.... .+ .....+..+...+...|++++|...+++..... +..| ....+..+...|...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45666666664444332 22 124556666666677777777777776665421 1111 2345666677777777
Q ss_pred ChHHHHHHHHhCC-----C--CC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CC----chHHHHHHHHHhc
Q 006997 485 RFDLALKTIHEMP-----V--EV--QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG--ST----GNYILMANLFTSA 549 (622)
Q Consensus 485 ~~~~A~~~~~~~~-----~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~ 549 (622)
++++|...+++.. . .+ ....+..+...+...|++++|...+++++++.+. ++ ..+..++.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 7777777776653 1 11 1345677778888888999998888888865322 22 2357888999999
Q ss_pred CChHHHHHHHHHhhh
Q 006997 550 GMWKEAATARGLMDD 564 (622)
Q Consensus 550 g~~~~A~~~~~~~~~ 564 (622)
|++++|.+.+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999888765
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=2.2e-07 Score=73.85 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...+..+...+...|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888999999999999999999886 44567788999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhC
Q 006997 548 SAGMWKEAATARGLMDDR 565 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~ 565 (622)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998774
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=3.6e-07 Score=73.20 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=88.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
+...+..+...+...|++++|...++++. .+.+...+..++..+...|++++|+..++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677788899999999999999999876 4456778999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhC
Q 006997 547 TSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 547 ~~~g~~~~A~~~~~~~~~~ 565 (622)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998874
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=7.1e-07 Score=83.37 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=113.0
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC--C-Ch------hHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC---CCC--HH
Q 006997 370 QTSLIHMFSKCGRINKAKEVFERVPD--K-DL------AVWSAMINGYAIHGMGDQALNLFYKMQHVEGL---KPD--AV 435 (622)
Q Consensus 370 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~p~--~~ 435 (622)
+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+ ... .+. ..
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT-TCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHhcCCchHHHHH
Confidence 34456667777888888777764331 1 11 1233355566777899999999988875 211 111 34
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-------cH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS-----IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-------QA 502 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~ 502 (622)
+++.+...|...|++++|...++++.......|+ ..++..+...|.+.|++++|+..+++.. ..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999888732111222 2577888899999999999999998764 111 15
Q ss_pred HhHHHHHHHHHhcCCHHHH-HHHHHHHHcc
Q 006997 503 QVWAPLLSACMKHHNVELG-EYAAKNLLTL 531 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 531 (622)
.++..++.++...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788889999999999999 7888888763
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3e-07 Score=75.74 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMA 543 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 543 (622)
+...+..+...+...|++++|++.+++.. ..|+ ...|..+..++...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 56778889999999999999999999876 5565 678888999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhC
Q 006997 544 NLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 544 ~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
.+|...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999998874
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.60 E-value=1.5e-07 Score=94.17 Aligned_cols=119 Identities=8% Similarity=0.041 Sum_probs=97.5
Q ss_pred HHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CcHHhHHHHHHHHHhcC
Q 006997 440 ILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VE-VQAQVWAPLLSACMKHH 516 (622)
Q Consensus 440 ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~ 516 (622)
+...+.+.|++++|++.|+++.+. .| +...+..+..+|.+.|++++|++.++++. .. .+...|..++.++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 344566788899999999888854 45 57788888999999999999999998876 33 45778999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 006997 517 NVELGEYAAKNLLTLNPGSTGNYILMANL--FTSAGMWKEAATARGL 561 (622)
Q Consensus 517 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 561 (622)
++++|++.++++++++|+++..+..++.+ +.+.|++++|++.+++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999988 8999999999999984
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.60 E-value=4.7e-07 Score=90.27 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...|..+..+|.+.|++++|+..++++. .+.+...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4677788888999999999999998876 44567889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHhhhC
Q 006997 548 SAGMWKEAAT-ARGLMDDR 565 (622)
Q Consensus 548 ~~g~~~~A~~-~~~~~~~~ 565 (622)
+.|++++|.+ .+++|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998874 56666543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.54 E-value=6.5e-07 Score=72.58 Aligned_cols=112 Identities=6% Similarity=-0.108 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHH
Q 006997 433 DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLL 509 (622)
Q Consensus 433 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 509 (622)
+...+..+...+...|++++|...|++.... .| +...+..+..++...|++++|+..++++. .+.+...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4667777888888888888888888887754 34 56777888888888888888888888776 344577888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCC-----CCchHHHHHHHHH
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPG-----STGNYILMANLFT 547 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 547 (622)
.++...|++++|+..+++++++.|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887 4555555554443
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.53 E-value=2.5e-07 Score=88.15 Aligned_cols=147 Identities=10% Similarity=-0.026 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDL 479 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 479 (622)
.+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 455555566666777777777777666 4454331 222333333332211 1367788888
Q ss_pred HHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH-HhcCChHHHH
Q 006997 480 LGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF-TSAGMWKEAA 556 (622)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 556 (622)
|.+.|++++|+..++++. .+.+...|..+..++...|++++|+..|+++++++|+++.++..++.+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 3445778888999999999999999999999999999999988888884 4457788888
Q ss_pred HHHHHhhhCCC
Q 006997 557 TARGLMDDRRL 567 (622)
Q Consensus 557 ~~~~~~~~~~~ 567 (622)
..|++|....+
T Consensus 320 ~~~~~~l~~~p 330 (338)
T 2if4_A 320 EMYKGIFKGKD 330 (338)
T ss_dssp -----------
T ss_pred HHHHHhhCCCC
Confidence 88888876443
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=5.3e-07 Score=71.90 Aligned_cols=101 Identities=11% Similarity=0.039 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc--------HHhH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ--------AQVW 505 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--------~~~~ 505 (622)
.+..+...+.+.|++++|+..|+++.+. .| +...|..+..+|.+.|++++|++.+++.. ..|+ ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3445555666666666666666665533 33 35555566666666666666666666553 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
..++.++...|++++|++.|+++++..| ++....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 6777888888999999999999988887 444443
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.52 E-value=7e-08 Score=75.90 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=62.0
Q ss_pred cCChHHHHHHHHhCC-C---CCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHH
Q 006997 483 AGRFDLALKTIHEMP-V---EVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAAT 557 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~-~---~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 557 (622)
.|++++|+..|+++. . .|+ ...|..++.++...|++++|+..++++++++|+++.++..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466677777777665 2 233 55677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhhC
Q 006997 558 ARGLMDDR 565 (622)
Q Consensus 558 ~~~~~~~~ 565 (622)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877663
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=6.2e-07 Score=85.40 Aligned_cols=98 Identities=8% Similarity=-0.055 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----------------AQVWAPLLSACMKHHNVELGEYAAKNLLTLN 532 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 532 (622)
...+..+...|.+.|++++|+..|+++. ..|+ ..+|..+..++.+.|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4445555566666666666666666554 2222 4788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 533 PGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 533 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
|+++.++..++.+|...|++++|+..|+++.+..+
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999987543
No 168
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.51 E-value=6.1e-07 Score=75.54 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...+..+...+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++.+|+++.++..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456778888999999999999999876 44567889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCC
Q 006997 548 SAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 548 ~~g~~~~A~~~~~~~~~~~~ 567 (622)
..|++++|.+.++++.+..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhccHHHHHHHHHHHHHhCC
Confidence 99999999999999987544
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=1.1e-06 Score=76.47 Aligned_cols=63 Identities=11% Similarity=0.002 Sum_probs=59.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 503 QVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 503 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
..|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.+.|++..+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999999998774
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=5e-07 Score=90.45 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=69.8
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAG 484 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 484 (622)
.+.+.|++++|++.|++..+ ..|+ ...+..+..++.+.|++++|++.++++.+. .| +...+..+..+|.+.|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 34456677777777777766 4454 556666777777777777777777777643 34 4566667777777777
Q ss_pred ChHHHHHHHHhCC-CCC-cHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 006997 485 RFDLALKTIHEMP-VEV-QAQVWAPLLSA--CMKHHNVELGEYAAK 526 (622)
Q Consensus 485 ~~~~A~~~~~~~~-~~~-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 526 (622)
++++|++.++++. ..| +...+..+..+ +...|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777664 222 33445555444 666677777777777
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=1.2e-05 Score=75.01 Aligned_cols=226 Identities=11% Similarity=0.018 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 006997 300 WTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELG-SLSKGKEIEEYIVLNGLESNRQVQTSLIHMFS 378 (622)
Q Consensus 300 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (622)
++.+-......+..++|++++.+++..+. -+...++.--..+...+ .++++..+++.+.... +-+..+++.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33333344455566778888888877531 23334444444555555 4777777777777655 344555555444444
Q ss_pred hc-C-ChHHHHHHhccCCCC---ChhHHHHHHHHHHHcCCHH--------HHHHHHHHhHHhcCCCC-CHHHHHHHHHHH
Q 006997 379 KC-G-RINKAKEVFERVPDK---DLAVWSAMINGYAIHGMGD--------QALNLFYKMQHVEGLKP-DAVVYTSILSAC 444 (622)
Q Consensus 379 ~~-~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~ 444 (622)
+. + +++++.++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+ ..| |...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 44 4 555666666555543 2333433333333333333 44445444444 222 233444444444
Q ss_pred hccCc-------hHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 006997 445 SHSGM-------VDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHN 517 (622)
Q Consensus 445 ~~~g~-------~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 517 (622)
.+.+. ++++++.++++... .+.|...|+.+...+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~----------------------------------~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL----------------------------------IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH----------------------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh----------------------------------CCCCHHHHHHHHHHHHhcCC
Confidence 44333 34444444444422 23334444444444433332
Q ss_pred H--------------------HHHHHHHHHHHcc------CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 518 V--------------------ELGEYAAKNLLTL------NPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 518 ~--------------------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
. ....+....++.. ++..+.++..++++|...|+.++|.++++.+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 258 PLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 1 1122222222222 245677888999999999999999999999864
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=4.2e-07 Score=72.84 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------CchHHHH
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS-------TGNYILM 542 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l 542 (622)
.+..+...+...|++++|...++++. .+.+...+..++..+...|++++|...++++++..|++ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34445555555555555555555543 23345555666666666666666666666666665544 5566666
Q ss_pred HHHHHhcCChHHHHHHHHHhhh
Q 006997 543 ANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 543 ~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+.+|...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 7777777777777777766655
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.47 E-value=8.5e-07 Score=82.06 Aligned_cols=113 Identities=7% Similarity=-0.092 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHH
Q 006997 433 DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLL 509 (622)
Q Consensus 433 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 509 (622)
+...+..+...+...|++++|+..|+++... .| +...+..+..+|.+.|++++|+..++++. ..| +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567778888899999999999999998864 45 67788888999999999999999998876 344 477888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
.++...|++++|+..++++++++|+++..+...++...+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 118 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence 899999999999999999999988776555544444443
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.47 E-value=1.8e-05 Score=73.53 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=104.8
Q ss_pred ChhHHHHHHHHHHHcC--CHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCc-hHHHHHHHHHhHHhcCCCC-Chh
Q 006997 397 DLAVWSAMINGYAIHG--MGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGM-VDDGLSFFKSMQSNFGIEP-SIE 471 (622)
Q Consensus 397 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~ 471 (622)
+..+|+.-.-.+...+ .+++++.+++++.+ ..| |...|+.-..++...|. ++++++.++++... .| |..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~---~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~S 180 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYS 180 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHH
Confidence 4445554444444555 36777777777776 444 34556655555566666 46777777777754 33 555
Q ss_pred HHHHHHHHHHhc--------------CChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc-----------CCHHHHHHH
Q 006997 472 HYLCLVDLLGRA--------------GRFDLALKTIHEMP--VEVQAQVWAPLLSACMKH-----------HNVELGEYA 524 (622)
Q Consensus 472 ~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~ 524 (622)
.|+.....+.+. +.++++++.+.++. .+.|...|+-+...+... +.++++++.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 666555554443 34677777777765 445566776655555444 457889999
Q ss_pred HHHHHccCCCCCchHHHHHHHH---HhcCChHHHHHHHHHhhhCCC
Q 006997 525 AKNLLTLNPGSTGNYILMANLF---TSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~ 567 (622)
++++++++|++...+..++... ...|..++....+.++.+-++
T Consensus 261 ~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 261 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 9999999998865555444332 246788888888888877433
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=8.8e-07 Score=69.84 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCcHHhHHHHHHHHH
Q 006997 437 YTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-V-EVQAQVWAPLLSACM 513 (622)
Q Consensus 437 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 513 (622)
+..+...+.+.|++++|+..|+++.+. .| +...|..+..++...|++++|+..++++. . +.+...|..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666777888888888888888754 44 57777788888888888888888888876 3 345778888888999
Q ss_pred hcCCHHHHHHHHHHHHccCCCCC
Q 006997 514 KHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 514 ~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
..|++++|+..++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999998654
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=1e-06 Score=77.08 Aligned_cols=154 Identities=12% Similarity=-0.003 Sum_probs=92.6
Q ss_pred hcCChHHHHH---HhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHh---cCCCCC-HHHHHHHHHHHhccCchH
Q 006997 379 KCGRINKAKE---VFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHV---EGLKPD-AVVYTSILSACSHSGMVD 451 (622)
Q Consensus 379 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~-~~~~~~ll~~~~~~g~~~ 451 (622)
..|++++|.+ .+..-+......+..+...+...|++++|...+++..+. .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455566655 443322223445666666666777777777777665541 111121 345666677777778888
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhCC------CCCc--HHhHHHHHHHHHhcCCH
Q 006997 452 DGLSFFKSMQSNFGIEP-S----IEHYLCLVDLLGRAGRFDLALKTIHEMP------VEVQ--AQVWAPLLSACMKHHNV 518 (622)
Q Consensus 452 ~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~--~~~~~~l~~~~~~~~~~ 518 (622)
+|...+++......-.+ + ...+..+...+...|++++|...+++.. ..+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88877777654311122 1 3346667777778888888887777653 1111 22456777788888888
Q ss_pred HHHHHHHHHHHccC
Q 006997 519 ELGEYAAKNLLTLN 532 (622)
Q Consensus 519 ~~a~~~~~~~~~~~ 532 (622)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887653
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.7e-06 Score=85.96 Aligned_cols=164 Identities=11% Similarity=-0.060 Sum_probs=117.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHHHHHHhccCchHHHHHHHHHhHHh---cCCCC-ChhH
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV----VYTSILSACSHSGMVDDGLSFFKSMQSN---FGIEP-SIEH 472 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~ 472 (622)
+..+...|...|++++|.+.+.++.+..+..++.. ..+.+...+...|+++.|..+++..... .+..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 55677788888888888888888766222222221 2333444556778899999988876532 12222 2556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---C----Cc
Q 006997 473 YLCLVDLLGRAGRFDLALKTIHEMP-------VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG---S----TG 537 (622)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~----~~ 537 (622)
+..++..|...|++++|..+++++. ..+. ..++..++..|...|++++|...+++++...+. + ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788999999999999999988763 1222 457888889999999999999999999875332 2 24
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 538 NYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.+..++..+...|++++|...|....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888999999999988877754
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.44 E-value=3.1e-07 Score=74.44 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-C-------CCc-HHhH----HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-V-------EVQ-AQVW----APLLSACMKHHNVELGEYAAKNLLTLNPGSTGN 538 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 538 (622)
.|..+..++.+.|++++|+..+++.. . .|+ ...| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 67777777777777777777777665 4 665 5678 899999999999999999999999999998877
Q ss_pred HHHHHHH
Q 006997 539 YILMANL 545 (622)
Q Consensus 539 ~~~l~~~ 545 (622)
..-+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=3e-06 Score=67.67 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=73.3
Q ss_pred HHHHHHhccCchHHHHHHHHHhHHhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc----HHhHHHHH
Q 006997 439 SILSACSHSGMVDDGLSFFKSMQSNFGIEPS-I---EHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ----AQVWAPLL 509 (622)
Q Consensus 439 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 509 (622)
.+...+...|++++|...|+++.+. .|+ . ..+..+..++.+.|++++|+..++++. ..|+ ...+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3455666677777777777777654 332 2 356667777777778888777777765 2232 55677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 006997 510 SACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANL 545 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 545 (622)
.++...|++++|...++++++..|+++........+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 888899999999999999999999877665554444
No 180
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=0.00019 Score=67.07 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=126.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 006997 270 NLLVSMYTKCGDLELARRVFDAVLEK---SVFLWTSMIGGYAQLG-YPSEAVNLFKRLLKTSVRPNEATLATTLSACAEL 345 (622)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 345 (622)
+.+-....+.+..++|+++++.+... +..+|+.-...+...| .++++++.++.+..... -+...|+.-...+...
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHh
Confidence 33444445566678899999988543 5578888888888888 59999999999998753 3556666666666555
Q ss_pred -C-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChH--------HHHHHhccCCC---CChhHHHHHHHHHHHcC
Q 006997 346 -G-SLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRIN--------KAKEVFERVPD---KDLAVWSAMINGYAIHG 412 (622)
Q Consensus 346 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 412 (622)
+ +++++.++++.+.+.. +-+..+++.-.-++.+.|.++ ++.+.++++.+ .|...|+.....+.+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 6 7899999999998765 456667766555555555555 88888887764 46678888777777777
Q ss_pred C-------HHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCc
Q 006997 413 M-------GDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGM 449 (622)
Q Consensus 413 ~-------~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~ 449 (622)
+ ++++++.++++.. ..|+ ...|+.+-..+.+.|.
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCC
Confidence 6 6889999999887 6664 5666665555555544
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=1.1e-06 Score=84.72 Aligned_cols=90 Identities=8% Similarity=-0.001 Sum_probs=79.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
+...|..+..+|.+.|++++|++.++++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678889999999999999999999876 344 5778999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 006997 547 TSAGMWKEAATA 558 (622)
Q Consensus 547 ~~~g~~~~A~~~ 558 (622)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999988887653
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.41 E-value=8e-07 Score=74.36 Aligned_cols=129 Identities=12% Similarity=-0.006 Sum_probs=83.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----C-CC--cHH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP-----V-EV--QAQ 503 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~-~~--~~~ 503 (622)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++.. . .+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555555666666666666555432110111 1345566666777777777777776653 0 11 134
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------CCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTLNPG------STGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.+..+...+...|++++|...+++++++.+. .+..+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777888888999999988888875321 245678899999999999999999988765
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.1e-07 Score=73.81 Aligned_cols=95 Identities=8% Similarity=-0.041 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHH
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGS------TGNYI 540 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 540 (622)
+...+..+...+.+.|++++|++.+++.. .+.+...|..++.++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34566777788888888888888888775 34457788899999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCChHHHHHHHHHhh
Q 006997 541 LMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 541 ~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
.++.++...|++++|.+.++++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHhHhhhHhHHHHhH
Confidence 88888888888887776666543
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.39 E-value=8.8e-07 Score=74.29 Aligned_cols=79 Identities=18% Similarity=0.071 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC-chHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGST-GNYILMANLF 546 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 546 (622)
...|..+..+|.+.|++++|+..++++. .+.+...|..++.++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4677888889999999999999998876 344577899999999999999999999999999999887 5555555554
Q ss_pred Hh
Q 006997 547 TS 548 (622)
Q Consensus 547 ~~ 548 (622)
.+
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 185
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=1.5e-06 Score=69.54 Aligned_cols=112 Identities=7% Similarity=-0.015 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCc----HHhH
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-V----EVQ----AQVW 505 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~ 505 (622)
..+..+...+...|++++|...++++... .+.+...+..+...|...|++++|...++++. . .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555566666666666676666666643 12345566666666777777777777776654 1 112 5567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc
Q 006997 506 APLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSA 549 (622)
Q Consensus 506 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 549 (622)
..++.++...|++++|...++++++..| ++.....+..+....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 7888888899999999999999999888 677777777665543
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=2.6e-06 Score=65.86 Aligned_cols=101 Identities=14% Similarity=0.026 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---cHHhHHHHH
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEV---QAQVWAPLL 509 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~ 509 (622)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|++.++++. ..| +...|..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 345666777777888888888888877754 12356677777888888888888888887765 333 467788888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHccCCCCC
Q 006997 510 SACMKH-HNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 510 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 536 (622)
.++... |++++|.+.+++++...|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 999999999999998888654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=4.4e-07 Score=71.21 Aligned_cols=93 Identities=11% Similarity=0.102 Sum_probs=67.0
Q ss_pred cCchHHHHHHHHHhHHhcCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHH
Q 006997 447 SGMVDDGLSFFKSMQSNFGI-EP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGE 522 (622)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 522 (622)
.|++++|+..|+++.+. +. .| +...+..+..+|...|++++|+..++++. .+.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777778888777732 10 23 35667777888888888888888888775 3445677888888899999999999
Q ss_pred HHHHHHHccCCCCCchHH
Q 006997 523 YAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 523 ~~~~~~~~~~p~~~~~~~ 540 (622)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998776543
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.30 E-value=2.4e-06 Score=64.61 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=61.6
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 499 EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+.+...|..++.++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3457789999999999999999999999999999999999999999999999999999999988763
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.30 E-value=3.8e-06 Score=83.72 Aligned_cols=66 Identities=8% Similarity=-0.027 Sum_probs=61.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 502 AQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|+++.+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 467889999999999999999999999999999999999999999999999999999999987543
No 190
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=0.00017 Score=66.98 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--ChHHHHHHhccCCC---CChhHHHHHHHHHHHcCC-HHHHHHHH
Q 006997 348 LSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCG--RINKAKEVFERVPD---KDLAVWSAMINGYAIHGM-GDQALNLF 421 (622)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 421 (622)
++++..+++.+.... |-+..+++.-.-++.+.+ .++++.++++++.+ .|..+|+.-.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456677777776655 446666666666666666 37788888877764 455666666666666777 58888888
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHhcc--------------CchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc--
Q 006997 422 YKMQHVEGLKP-DAVVYTSILSACSHS--------------GMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRA-- 483 (622)
Q Consensus 422 ~~~~~~~~~~p-~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-- 483 (622)
+++.+ ..| |...|+.....+... +.++++++.+...... .| |...|+.+-..+.+.
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSC
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccC
Confidence 88887 445 345555544444333 4577888888888754 55 566666555555544
Q ss_pred ---------CChHHHHHHHHhCC-CCCcHHhHHHHHHHH-----HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHH
Q 006997 484 ---------GRFDLALKTIHEMP-VEVQAQVWAPLLSAC-----MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLF 546 (622)
Q Consensus 484 ---------g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 546 (622)
+.++++++.++++. ..|+. .|..+..+. ...+..++....+.++.+++|-...-|..+..-+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 45788888888876 55654 343322222 2357788999999999999998777777766544
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=4.9e-06 Score=80.11 Aligned_cols=113 Identities=10% Similarity=-0.013 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 006997 435 VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMK 514 (622)
Q Consensus 435 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 514 (622)
..+..+...+.+.|++++|+..|+++.+. .+... .....+++.+ . .+.+...|..+..++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~~----------~~~~~~~~~~----~-~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGSR----------AAAEDADGAK----L-QPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHH----------HHSCHHHHGG----G-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcCc----------cccChHHHHH----H-HHHHHHHHHHHHHHHHh
Confidence 44666667777777777777777776642 11100 0001111110 0 12236678899999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 515 HHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 515 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
.|++++|+..++++++++|+++.++..++.+|...|++++|++.|+++.+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998874
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.27 E-value=4.4e-07 Score=73.38 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=59.6
Q ss_pred CChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC-
Q 006997 484 GRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHN----------VELGEYAAKNLLTLNPGSTGNYILMANLFTSAG- 550 (622)
Q Consensus 484 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 550 (622)
+++++|++.+++.. .+.+...|..++.++...++ +++|+..|+++++++|+++.+|+.++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 34445555554443 23334445555554444433 579999999999999999999999999999875
Q ss_pred ----------ChHHHHHHHHHhhhCCC
Q 006997 551 ----------MWKEAATARGLMDDRRL 567 (622)
Q Consensus 551 ----------~~~~A~~~~~~~~~~~~ 567 (622)
++++|++.|++..+.++
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 89999999999887544
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=3.1e-05 Score=78.89 Aligned_cols=166 Identities=8% Similarity=-0.023 Sum_probs=132.0
Q ss_pred hHHHHHHhccCCC---CChhHHHHHHHHHHHcCC----------HHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccC
Q 006997 383 INKAKEVFERVPD---KDLAVWSAMINGYAIHGM----------GDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSG 448 (622)
Q Consensus 383 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g 448 (622)
.++|.+.++++.. .+...|+.--.++...|+ ++++++.++++.+ ..|+ ..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcc
Confidence 4556666666653 234456655555555555 8999999999998 5665 578888888888888
Q ss_pred --chHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhc-------
Q 006997 449 --MVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAG-RFDLALKTIHEMP--VEVQAQVWAPLLSACMKH------- 515 (622)
Q Consensus 449 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------- 515 (622)
+++++++.++++.+. .| +...|+.-..++.+.| .++++++.++++. .+-+..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 679999999999965 44 6788888888888888 8999999999987 344577898888777663
Q ss_pred -------CCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHH
Q 006997 516 -------HNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKE 554 (622)
Q Consensus 516 -------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 554 (622)
+.++++.+.+++++..+|++.++|..+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998655
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.26 E-value=4.2e-06 Score=83.06 Aligned_cols=124 Identities=9% Similarity=0.043 Sum_probs=95.3
Q ss_pred HhccCchHHHHHHHHHhHHhcC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCc-HHhHHH
Q 006997 444 CSHSGMVDDGLSFFKSMQSNFG--IEP----SIEHYLCLVDLLGRAGRFDLALKTIHEMP---------VEVQ-AQVWAP 507 (622)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~ 507 (622)
+...|++++|+.++++...... +.| ...+++.|+.+|...|++++|+.+++++. ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888887777654311 112 24567788888888888888888887763 3444 446889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHc-----cCCCCCch---HHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 508 LLSACMKHHNVELGEYAAKNLLT-----LNPGSTGN---YILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
|+..|..+|++++|+.+++++++ +.|++|.+ ...+..++.++|++++|...|++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 57877665 45788889999999999999999987543
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.23 E-value=2.1e-06 Score=67.05 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=66.0
Q ss_pred HHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 488 LALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 488 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+|+..+++.. .+.+...|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|...|++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555555543 23457788889999999999999999999999999999999999999999999999999999988763
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.23 E-value=5.2e-06 Score=61.33 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFT 547 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 547 (622)
...+..+...+...|++++|+..+++.. .+.+...+..+..++...|++++|...++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4556667777777788888888777765 33456678888888888899999999999999999988888888888887
Q ss_pred hcC
Q 006997 548 SAG 550 (622)
Q Consensus 548 ~~g 550 (622)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.22 E-value=3.8e-06 Score=79.93 Aligned_cols=152 Identities=8% Similarity=-0.005 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhc
Q 006997 367 RQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSH 446 (622)
Q Consensus 367 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 446 (622)
...+..+...+.+.|++++|...|++....+.... .+...++..++...+ . ...|..+..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l---~--------~~~~~nla~~~~~ 242 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAV---K--------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHH---H--------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHH---H--------HHHHHHHHHHHHH
Confidence 34567788888899999999999998653221111 112223333333221 1 1367888889999
Q ss_pred cCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCc-HHhHHHHHHHH-HhcCCHHHHH
Q 006997 447 SGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQ-AQVWAPLLSAC-MKHHNVELGE 522 (622)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~-~~~~~~~~a~ 522 (622)
.|++++|+..++++... .| +...+..+..+|...|++++|+..|+++. ..|+ ...+..+.... ...+..+.+.
T Consensus 243 ~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999864 45 67888999999999999999999999987 4454 44555555553 3456778899
Q ss_pred HHHHHHHccCCCCCc
Q 006997 523 YAAKNLLTLNPGSTG 537 (622)
Q Consensus 523 ~~~~~~~~~~p~~~~ 537 (622)
..|++++...|+++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999999997653
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=5.9e-06 Score=68.91 Aligned_cols=134 Identities=11% Similarity=0.035 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----hh
Q 006997 400 VWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPD----AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----IE 471 (622)
Q Consensus 400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 471 (622)
++..+...+...|++++|+..+++..+...-.++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666677777777777777776651111112 135667777788888888888888876643111112 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-----C-CC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP-----V-EV--QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
.+..+...+...|++++|.+.+++.. . .+ ...++..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56677788888888888888887764 1 11 134567788888899999999999999887543
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.3e-05 Score=79.69 Aligned_cols=160 Identities=6% Similarity=-0.024 Sum_probs=118.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCCCCC---------------HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC
Q 006997 405 INGYAIHGMGDQALNLFYKMQHVEGLKPD---------------AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS 469 (622)
Q Consensus 405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 469 (622)
...+.+.|++++|++.|.++.+......+ ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567788999999999988872111111 123678899999999999999999998764333332
Q ss_pred h----hHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHcc------
Q 006997 470 I----EHYLCLVDLLGRAGRFDLALKTIHEMP-------VEV-QAQVWAPLLSACMKHHNVELGEYAAKNLLTL------ 531 (622)
Q Consensus 470 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 531 (622)
. .+.+.+...+...|++++|.+++++.. ..+ ...++..++..+...|++++|...+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 223344455566789999999887753 222 2557788999999999999999999998763
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 532 NPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 532 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222345788999999999999999999998865
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.09 E-value=1.5e-05 Score=58.63 Aligned_cols=70 Identities=20% Similarity=0.105 Sum_probs=61.3
Q ss_pred CCcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 006997 499 EVQAQVWAPLLSACMKHHN---VELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRLT 568 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (622)
++++..+..+..++...++ .++|..+++++++++|+++.+...+|..+.+.|++++|+..|+++.+..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567778888888765554 799999999999999999999999999999999999999999999986553
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=3.7e-05 Score=62.02 Aligned_cols=111 Identities=5% Similarity=-0.128 Sum_probs=72.2
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHH
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMK----HHNVELGEYA 524 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 524 (622)
++++|.+.|++..+. | .|... |...|...+..++|.++|++.....++.....|...|.. .+|+++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666665543 2 22222 555555555666666666665534455666666666666 6777888888
Q ss_pred HHHHHccCCCCCchHHHHHHHHHh----cCChHHHHHHHHHhhhCCC
Q 006997 525 AKNLLTLNPGSTGNYILMANLFTS----AGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 525 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 567 (622)
++++.+. +++..+..|+.+|.. .+++++|.+.|++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8887765 467778888888887 7888888888887776543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.5e-05 Score=61.37 Aligned_cols=68 Identities=13% Similarity=-0.030 Sum_probs=62.4
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 500 VQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 500 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
++...|..++..+...|++++|+..++++++++|+++.++..++.+|.+.|++++|++.+++..+..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35667888999999999999999999999999999999999999999999999999999999987543
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=8.9e-05 Score=75.52 Aligned_cols=149 Identities=14% Similarity=0.090 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHhccCc----------hHHHHHHHHHhHHhcCCCC-ChhHHHHHHHH
Q 006997 412 GMGDQALNLFYKMQHVEGLKPDA-VVYTSILSACSHSGM----------VDDGLSFFKSMQSNFGIEP-SIEHYLCLVDL 479 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 479 (622)
...++|++.++++.. +.|+. ..|+.-..++...|+ ++++++.++.+.+. .| +...|+.-..+
T Consensus 43 ~~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 43 ELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp CCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 345788999999998 77874 556666666666666 89999999999965 45 67888888888
Q ss_pred HHhcC--ChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHccCCCCCchHHHHHHHHHhc-----
Q 006997 480 LGRAG--RFDLALKTIHEMP--VEVQAQVWAPLLSACMKHH-NVELGEYAAKNLLTLNPGSTGNYILMANLFTSA----- 549 (622)
Q Consensus 480 ~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 549 (622)
+.+.| +++++++.++++. .+.+..+|+.-..+....| .++++.+.++++++.+|.+.++|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 99999 6799999999997 5556889999988988988 899999999999999999999999999998875
Q ss_pred ---------CChHHHHHHHHHhhhCC
Q 006997 550 ---------GMWKEAATARGLMDDRR 566 (622)
Q Consensus 550 ---------g~~~~A~~~~~~~~~~~ 566 (622)
+++++|.+.++++....
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC
Confidence 56799999998887643
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.01 E-value=3.6e-05 Score=76.38 Aligned_cols=115 Identities=11% Similarity=0.018 Sum_probs=88.7
Q ss_pred HHHHhcCChHHHHHHHHhCC---------CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCCc---hH
Q 006997 478 DLLGRAGRFDLALKTIHEMP---------VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLT-----LNPGSTG---NY 539 (622)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~ 539 (622)
..+...|++++|+.++++.. ..|+ ..+++.|+.+|..+|++++|+.+++++++ +.|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999987763 2333 45788999999999999999999999986 4666654 58
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 006997 540 ILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLL 610 (622)
Q Consensus 540 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 610 (622)
..|+.+|..+|++++|+.++++..+-.. ... ...||...++...+.+...++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-VTH-----------------GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHh-----------------CCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876211 111 1258998888877777665554
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=9e-06 Score=65.73 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=50.9
Q ss_pred chHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCC----------hHHHHHHHHhCC-CCC-cHHhHHHHHHHHHhc
Q 006997 449 MVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGR----------FDLALKTIHEMP-VEV-QAQVWAPLLSACMKH 515 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 515 (622)
.+++|++.+++..+. .| +...|..+..++...++ +++|+..|+++. ..| ....|..++.+|...
T Consensus 17 ~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555544432 23 34444444444444443 346666666554 233 355666666666654
Q ss_pred -----------CCHHHHHHHHHHHHccCCCCC
Q 006997 516 -----------HNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 516 -----------~~~~~a~~~~~~~~~~~p~~~ 536 (622)
|++++|++.|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999764
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.95 E-value=6.7e-05 Score=73.33 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=88.6
Q ss_pred HHHHHhcCChHHHHHHHHhCC------CCC---c-HHhHHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCCc---h
Q 006997 477 VDLLGRAGRFDLALKTIHEMP------VEV---Q-AQVWAPLLSACMKHHNVELGEYAAKNLLT-----LNPGSTG---N 538 (622)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~~~------~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~ 538 (622)
+..+.+.|++++|+.++++.. ..| + ..+++.|+.+|...|++++|+.+++++++ +.|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888877552 222 2 44688899999999999999999999986 4566554 5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 006997 539 YILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLKELHIKLL 610 (622)
Q Consensus 539 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 610 (622)
+..|+.+|..+|++++|+.++++..+-.. ... ...||...+++..|.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VTH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hhc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999876211 111 1269999999999998888876
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=6.3e-05 Score=55.32 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=60.5
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 501 QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 501 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888999999999999999999999999999999999999999999999999999998874
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.85 E-value=5.7e-05 Score=58.67 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=58.4
Q ss_pred HHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006997 452 DGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNL 528 (622)
Q Consensus 452 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 528 (622)
.|+..|+++.+ ..| +...+..+...|...|++++|+..++++. .+.+...|..++.++...|++++|...++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566666663 244 46667777777888888888888887765 3344667888888888888888888888888
Q ss_pred HccCCC
Q 006997 529 LTLNPG 534 (622)
Q Consensus 529 ~~~~p~ 534 (622)
+++.|+
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 888774
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.81 E-value=0.00044 Score=61.58 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=74.3
Q ss_pred hHHHHHHHHhCC-CCCc---HHhHHHHHHHHHh-----cCCHHHHHHHHHHHHccCCCC-CchHHHHHHHHHhc-CChHH
Q 006997 486 FDLALKTIHEMP-VEVQ---AQVWAPLLSACMK-----HHNVELGEYAAKNLLTLNPGS-TGNYILMANLFTSA-GMWKE 554 (622)
Q Consensus 486 ~~~A~~~~~~~~-~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 554 (622)
..+|...++++. ..|+ ...|..|+..|.. .|+.++|+++|+++++++|+. ..+++.+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 567777777776 5565 5678888888888 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHhhhCCCccCCC
Q 006997 555 AATARGLMDDRRLTKEPG 572 (622)
Q Consensus 555 A~~~~~~~~~~~~~~~~~ 572 (622)
|.+.+++..+..+...|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999987765564
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.79 E-value=6.1e-05 Score=73.41 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=75.6
Q ss_pred cCChHHHHHHHHhCC---------CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCCc---hHHHHHH
Q 006997 483 AGRFDLALKTIHEMP---------VEVQ-AQVWAPLLSACMKHHNVELGEYAAKNLLT-----LNPGSTG---NYILMAN 544 (622)
Q Consensus 483 ~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 544 (622)
.|++++|+.++++.. ..|+ ..+++.|+.+|..+|++++|+.+++++++ +.|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456677776666542 2333 45688899999999999999999999986 4566654 5889999
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCCcchHHHHHHHH
Q 006997 545 LFTSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSHHLSVDIRKTLK 603 (622)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 603 (622)
+|..+|++++|+.++++..+-.. ... ...||...+++..|.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~-~~l-----------------G~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIME-VAH-----------------GKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH-HHT-----------------CTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH-HHc-----------------CCCChHHHHHHHHHh
Confidence 99999999999999999876211 111 125898888765543
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.77 E-value=4.5e-05 Score=57.29 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=61.2
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 006997 476 LVDLLGRAGRFDLALKTIHEMP--VEVQAQ-VWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMW 552 (622)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 552 (622)
....+.+.|++++|+..++++. .+.+.. .|..++.++...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556777888888888888765 333456 78888888888999999999999999999988877633 566
Q ss_pred HHHHHHHHHhhh
Q 006997 553 KEAATARGLMDD 564 (622)
Q Consensus 553 ~~A~~~~~~~~~ 564 (622)
.++...|++...
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 667777765544
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00031 Score=56.44 Aligned_cols=112 Identities=8% Similarity=-0.112 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCChH
Q 006997 412 GMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGR----AGRFD 487 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 487 (622)
+++++|++.|++..+ .| .|+.. +...|...+.+++|.+.|++..+. -++.....|...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 468899999999988 55 34333 777788888899999999998853 467788888899988 88999
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHccCC
Q 006997 488 LALKTIHEMPVEVQAQVWAPLLSACMK----HHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 488 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 533 (622)
+|.++|++.....++.....|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998755678888889999988 8999999999999998754
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.67 E-value=0.00016 Score=57.66 Aligned_cols=64 Identities=8% Similarity=-0.047 Sum_probs=30.6
Q ss_pred cHHhHHHHHHHHHhcC---CHHHHHHHHHHHHccC-C-CCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 501 QAQVWAPLLSACMKHH---NVELGEYAAKNLLTLN-P-GSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 501 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+..+...+.+++.+.+ +.++++.+++.+++.+ | ++.+.++.++-.|.+.|++++|++.++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444444444 3334555555555444 3 3344445555555555555555555554444
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=0.00074 Score=62.93 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=28.8
Q ss_pred CChhHHHHHHHHHH--HcC---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHh
Q 006997 396 KDLAVWSAMINGYA--IHG---MGDQALNLFYKMQHVEGLKPD-AVVYTSILSACS 445 (622)
Q Consensus 396 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~ 445 (622)
.+...|...+.+.. ..+ +..+|..+|+++.+ ..|+ ...+..+..+|.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDI 244 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 35566666665432 233 34788999999988 7787 345554444443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.62 E-value=0.00011 Score=55.04 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-hHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 507 PLLSACMKHHNVELGEYAAKNLLTLNPGSTG-NYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 507 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
..+..+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.|++..+.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3556778899999999999999999999999 999999999999999999999999987544
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00014 Score=54.68 Aligned_cols=66 Identities=8% Similarity=-0.112 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 469 SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
+...+..+..+|.+.|++++|+..|+++. .+.+...|..++.++...|++++|+..+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 45666677777777777777777777765 3334667777888888888888888888888877653
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=1.3e-05 Score=75.78 Aligned_cols=370 Identities=12% Similarity=0.056 Sum_probs=238.7
Q ss_pred ChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 006997 164 EIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQ 243 (622)
Q Consensus 164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 243 (622)
.+.+|+.|..+....|++.+|+.-|=+ ..|...|..+|.+..+.|.+++-+..+...++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 677889999999999988888765533 3567788899999999999999999988777654334 344578889999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcC------------------------CCCHHH
Q 006997 244 VGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVL------------------------EKSVFL 299 (622)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~ 299 (622)
.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+. ..++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 988766555442 4666666778888888888888888877663 126678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 006997 300 WTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK 379 (622)
Q Consensus 300 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (622)
|-.+-.+|...+.+.-|.-.--.++-. |+ ....++..|...|-+++...+++...... .....+|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 999999999999888776554444421 11 12245566788888888888887766432 4567888989888887
Q ss_pred cCChHHHHHHhccCCC----C-------ChhHHHHHHHHHHHcCCHHHHHHHH-------------HHhHHhcCCCCCHH
Q 006997 380 CGRINKAKEVFERVPD----K-------DLAVWSAMINGYAIHGMGDQALNLF-------------YKMQHVEGLKPDAV 435 (622)
Q Consensus 380 ~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~~~~~p~~~ 435 (622)
- ++++..+.++.... | ....|.-++-.|..-.+++.|.... .++.. --+|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~---KVaN~E 351 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT---KVANVE 351 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG---GCSCSH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH---HcchHH
Confidence 5 56777666654332 2 4467888999999888888765321 11110 112222
Q ss_pred HH---------------HHHHHHHhccCchHHHHHHHHHhHHhc-------CCC-C-ChhHHHHHHHHHHhcCChHHHHH
Q 006997 436 VY---------------TSILSACSHSGMVDDGLSFFKSMQSNF-------GIE-P-SIEHYLCLVDLLGRAGRFDLALK 491 (622)
Q Consensus 436 ~~---------------~~ll~~~~~~g~~~~a~~~~~~~~~~~-------~~~-p-~~~~~~~l~~~~~~~g~~~~A~~ 491 (622)
.| +-++.++...=|..++.++|++.-.-. .+. . +..+-.++-+.|....+++.-.+
T Consensus 352 iyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~ 431 (624)
T 3lvg_A 352 LYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRT 431 (624)
T ss_dssp HHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHH
Confidence 33 334444444445556666665432100 111 1 23344567778888888776665
Q ss_pred HHHhCC------------CCCcHHhHHHHHHHHHhcCCHHHHHHHHH------HHHc--cCCCCCchHHHHHHHHHhcCC
Q 006997 492 TIHEMP------------VEVQAQVWAPLLSACMKHHNVELGEYAAK------NLLT--LNPGSTGNYILMANLFTSAGM 551 (622)
Q Consensus 492 ~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~--~~p~~~~~~~~l~~~~~~~g~ 551 (622)
-++... ..+-...-..-...|.+.+++++++.+.+ .+++ ....++..-..|.+-+...|+
T Consensus 432 SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~g~ 511 (624)
T 3lvg_A 432 SIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEK 511 (624)
T ss_dssp TTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCS
T ss_pred HHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 555443 11111122223345667777777766443 3444 345566777777777777777
Q ss_pred hHH
Q 006997 552 WKE 554 (622)
Q Consensus 552 ~~~ 554 (622)
.+-
T Consensus 512 ~Ec 514 (624)
T 3lvg_A 512 REC 514 (624)
T ss_dssp THH
T ss_pred hHH
Confidence 664
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.56 E-value=2e-06 Score=81.24 Aligned_cols=232 Identities=14% Similarity=0.109 Sum_probs=108.7
Q ss_pred CcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHH
Q 006997 29 NSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAH 108 (622)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~ 108 (622)
|+..|..++.++.+.|.++.-...+...++. ..++.+=+.|+-+|++.++..+..+++. .||+.-...+..-|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHH
Confidence 3444555555555555555555555544443 2333334455555555555444333222 34444444555555
Q ss_pred HhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHH
Q 006997 109 SRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIF 188 (622)
Q Consensus 109 ~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 188 (622)
...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-
T Consensus 155 f~e~lYeAAKilys~isN-----------------------------------------~akLAstLV~L~~yq~AVdaA 193 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSN-----------------------------------------FGRLASTLVHLGEYQAAVDGA 193 (624)
T ss_dssp HHSCCSTTSSTTGGGSCC-----------------------------------------CTTTSSSSSSCSGGGSSTTTT
T ss_pred HHccCHHHHHHHHHhCcc-----------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544443321 122222333334443332221
Q ss_pred hhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchh
Q 006997 189 DEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPL 268 (622)
Q Consensus 189 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (622)
+. ..++.+|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++-..+++.-.... ......
T Consensus 194 rK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGm 265 (624)
T 3lvg_A 194 RK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 265 (624)
T ss_dssp TT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHH
T ss_pred Hh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHH
Confidence 11 13556677776777776666655443333321 111 12234445555666666666555544221 344555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC----C-------CHHHHHHHHHHHHhcCChHHHH
Q 006997 269 DNLLVSMYTKCGDLELARRVFDAVLE----K-------SVFLWTSMIGGYAQLGYPSEAV 317 (622)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 317 (622)
++-|.-.|++- ++++..+.++..-. | ....|.-++-.|+.-.+++.|.
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66666666654 33333333332211 1 2234666666666666666553
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.38 E-value=0.00086 Score=65.33 Aligned_cols=95 Identities=18% Similarity=0.103 Sum_probs=68.6
Q ss_pred ccCchHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCc-HHhHHHHH
Q 006997 446 HSGMVDDGLSFFKSMQSNF--GIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP---------VEVQ-AQVWAPLL 509 (622)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 509 (622)
..|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.+++++. ..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777765421 11222 4567778888888888888888887763 3444 44688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHc-----cCCCCCchHH
Q 006997 510 SACMKHHNVELGEYAAKNLLT-----LNPGSTGNYI 540 (622)
Q Consensus 510 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 540 (622)
..|..+|++++|+.+++++++ +.|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999999987 5787776544
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.37 E-value=0.0018 Score=60.38 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHh--cc---CchHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHH----hcCC-------hHHHHHH
Q 006997 430 LKPDAVVYTSILSACS--HS---GMVDDGLSFFKSMQSNFGIEPS-IEHYLCLVDLLG----RAGR-------FDLALKT 492 (622)
Q Consensus 430 ~~p~~~~~~~ll~~~~--~~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~----~~g~-------~~~A~~~ 492 (622)
.+.+...|...+++.. .. .+..+|+.+|+++.+. .|+ ...+..+..+|. ..+. ...+.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 4445667777776543 33 3457899999999955 776 444444443332 1111 1122222
Q ss_pred HHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 493 IHEMP-VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 493 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
...+. .+.++.++..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.|++....++
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 22233 355677788887777778999999999999999998 567788999999999999999999999887554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.27 E-value=0.002 Score=62.92 Aligned_cols=101 Identities=8% Similarity=-0.084 Sum_probs=72.4
Q ss_pred HHHHhccCchHHHHHHHHHhHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCc-HHh
Q 006997 441 LSACSHSGMVDDGLSFFKSMQSNF--GIEPS----IEHYLCLVDLLGRAGRFDLALKTIHEMP---------VEVQ-AQV 504 (622)
Q Consensus 441 l~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~ 504 (622)
+..+.+.|++++|+.++++..... -+.|+ ..+++.|+.+|...|++++|+.+++++. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888887776421 11222 4567778888888888888888887663 3344 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCCchHHH
Q 006997 505 WAPLLSACMKHHNVELGEYAAKNLLT-----LNPGSTGNYIL 541 (622)
Q Consensus 505 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 541 (622)
++.|+..|..+|++++|+.+++++++ +.|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88899999999999999999999976 57877765543
No 222
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.07 E-value=0.12 Score=52.49 Aligned_cols=116 Identities=9% Similarity=0.012 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHH--HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 006997 412 GMGDQALNLFYKMQHVEGLKPDAV--VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLA 489 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 489 (622)
++.+.|...|....+...+.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 478899999988865233322221 2333444444555355666666665432 34444444444555677999999
Q ss_pred HHHHHhCCCCC-c-HHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 490 LKTIHEMPVEV-Q-AQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 490 ~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
...|+.++..+ + .....=+..+....|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999987332 2 21112244466678999999999998875
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.07 E-value=0.0027 Score=47.84 Aligned_cols=72 Identities=13% Similarity=0.042 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---------CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP---------VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILM 542 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 542 (622)
....+...+.+.|++..|..+++.+. ..+...++..|..++.+.|+++.|...+++++++.|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33445555566666666666665542 123466788999999999999999999999999999988776665
Q ss_pred H
Q 006997 543 A 543 (622)
Q Consensus 543 ~ 543 (622)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 4
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.97 E-value=0.0034 Score=50.07 Aligned_cols=91 Identities=15% Similarity=0.020 Sum_probs=67.1
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--cHHhHHHHHHHHHhcCCHHHH
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG---RFDLALKTIHEMP-VE-V--QAQVWAPLLSACMKHHNVELG 521 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~a 521 (622)
....+.+.|.+.... + .++..+.-.+..++.+++ +.++++.++++.. .. | ....+..|.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 345556666655543 2 367777777788888877 5668888887765 23 4 356777888899999999999
Q ss_pred HHHHHHHHccCCCCCchHHH
Q 006997 522 EYAAKNLLTLNPGSTGNYIL 541 (622)
Q Consensus 522 ~~~~~~~~~~~p~~~~~~~~ 541 (622)
.+.++++++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 99999999999987655543
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.96 E-value=0.0079 Score=43.95 Aligned_cols=68 Identities=7% Similarity=-0.096 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 006997 467 EPSIEHYLCLVDLLGRAGR---FDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPG 534 (622)
Q Consensus 467 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 534 (622)
+.++..+..+..++...++ .++|..++++.. .+.++..+..++..+...|++++|+..++++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4467777777777765544 688888888876 3444677788888889999999999999999999987
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.95 E-value=0.047 Score=58.81 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=95.3
Q ss_pred HHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHH
Q 006997 307 YAQLGYPSEAVN-LFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINK 385 (622)
Q Consensus 307 ~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (622)
....+++++|.+ ++.. .|+......++..+.+.|..+.|.++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 345667777665 4321 11122235556666677777777655421 1 111334567789999
Q ss_pred HHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcC
Q 006997 386 AKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFG 465 (622)
Q Consensus 386 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 465 (622)
|.++.+.+. +...|..+...+.+.++++.|++.|.++.. |..+...+...|+.+...++-+..... |
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~ 737 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETT-G 737 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C
Confidence 988887763 567888999999999999999999988776 445555556667776655555444432 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 466 IEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 466 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
.++....+|.+.|++++|++++.++.
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 12333445666777777776666553
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.82 E-value=0.0061 Score=46.69 Aligned_cols=87 Identities=16% Similarity=0.014 Sum_probs=38.8
Q ss_pred chHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--cHHhHHHHHHHHHhcCCHHHH
Q 006997 449 MVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDL---ALKTIHEMP-VE-V--QAQVWAPLLSACMKHHNVELG 521 (622)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~a 521 (622)
....+.+-|.+.... | .|+..+--.+..++.++.+..+ ++.++++.. .. | .......|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444332 2 2444444445555555544333 555555443 11 2 122333344444555555555
Q ss_pred HHHHHHHHccCCCCCc
Q 006997 522 EYAAKNLLTLNPGSTG 537 (622)
Q Consensus 522 ~~~~~~~~~~~p~~~~ 537 (622)
.+.++.+++.+|+|..
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 5555555555554433
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.76 E-value=0.12 Score=55.69 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=65.8
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHH
Q 006997 173 SMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALS 252 (622)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 252 (622)
......|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34556788999988887764 457888899999999999999999887753 3344445555666666555
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 006997 253 MHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVF 289 (622)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 289 (622)
+-+.....|. ++....+|.+.|++++|.+++
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 5555544431 233344455566666666553
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.72 E-value=0.13 Score=39.39 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=96.7
Q ss_pred HHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChH
Q 006997 408 YAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFD 487 (622)
Q Consensus 408 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 487 (622)
+...|..++..++..+... ..+..-++.++--....-+-+-..++++.+-+-|.+.+ +|+..
T Consensus 17 ~ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlK 78 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLK 78 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTH
T ss_pred HHHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHH
Confidence 3456788888888888776 12334455555555555566667777777655444333 34444
Q ss_pred HHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 488 LALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 488 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.....+-.+. .+.......+.....+|.-+.-.+++..++..+|-+|+...-++.+|.+.|+..+|.+++.++.++|+
T Consensus 79 rVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 79 SVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4444444432 23334455667778899999999999997776666899999999999999999999999999999887
Q ss_pred c
Q 006997 568 T 568 (622)
Q Consensus 568 ~ 568 (622)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.69 E-value=0.0051 Score=48.15 Aligned_cols=51 Identities=12% Similarity=-0.132 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 006997 516 HNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRR 566 (622)
Q Consensus 516 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 566 (622)
+|.++|.++|+.++.+...-+.+|...+..-.++|+.+.|++++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 556666666666655544444555555555566666666666666555543
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.15 Score=41.73 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=65.4
Q ss_pred HHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHH
Q 006997 375 HMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGL 454 (622)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 454 (622)
+.-..+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ +..+.-.|...|+.+...
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHH
Confidence 3445667777777776655 3566777777777777888888777777665 445555566667766655
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 455 SFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 455 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
++-+....+ | -++.....+.-.|+++++.+++.+..
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 554444322 1 13334445556677777777776654
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.015 Score=60.22 Aligned_cols=56 Identities=14% Similarity=0.050 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
-...|...|+++.|+++.++++...|.+..+|..|+.+|...|+|+.|+-.+..++
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456778999999999999999999999999999999999999999999999886
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.16 E-value=0.063 Score=41.09 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHH---HHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCh
Q 006997 412 GMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDD---GLSFFKSMQSNFGIEP--SIEHYLCLVDLLGRAGRF 486 (622)
Q Consensus 412 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 486 (622)
.....+.+.|.+... .|. |+..+-..+..++.+..+... ++.+++.+... + .| .......|.-++.+.|++
T Consensus 15 ~~l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhH
Confidence 344455555555544 333 566665566666666665544 77777776643 1 23 334445566677777777
Q ss_pred HHHHHHHHhCC-CCCc
Q 006997 487 DLALKTIHEMP-VEVQ 501 (622)
Q Consensus 487 ~~A~~~~~~~~-~~~~ 501 (622)
++|.+.++.+. .+|+
T Consensus 91 ~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 77777777765 4443
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.04 E-value=0.019 Score=43.08 Aligned_cols=64 Identities=9% Similarity=-0.088 Sum_probs=54.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHccC-------CCCCchHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 006997 502 AQVWAPLLSACMKHHNVELGEYAAKNLLTLN-------PGSTGNYILMANLFTSAGMWKEAATARGLMDDR 565 (622)
Q Consensus 502 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 565 (622)
..-...++..+...|+++.|..-++++++.. +..+.++..++.+|.+.|++++|...++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445578889999999999999999998853 234568999999999999999999999999763
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.01 E-value=0.2 Score=39.02 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=31.2
Q ss_pred CcHHhHHHHHHHHHhcCC---HHHHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 500 VQAQVWAPLLSACMKHHN---VELGEYAAKNLLTLNPG-STGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 500 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
|+..+--.+.+++.+..+ ..+++.+++.++...|. ..+..+.|+-.+.+.|++++|+++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333344444444444332 33455555555554442 233444555555555555555555555554
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.65 E-value=0.022 Score=50.81 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=43.8
Q ss_pred HHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHh-----cCChHHHHHHHHhCC-CCCc--HHhHHHHHHHHHh-cCCH
Q 006997 451 DDGLSFFKSMQSNFGIEPS---IEHYLCLVDLLGR-----AGRFDLALKTIHEMP-VEVQ--AQVWAPLLSACMK-HHNV 518 (622)
Q Consensus 451 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~-~~~~ 518 (622)
..|...++++.+ +.|+ ...|..+...|.+ -|+.++|.+.|++.. ..|+ ..++..+...++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 344444444442 2444 3345555555555 256666666666554 3332 4455555555555 3667
Q ss_pred HHHHHHHHHHHccCCC
Q 006997 519 ELGEYAAKNLLTLNPG 534 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~ 534 (622)
+++.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776664
No 237
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.77 Score=37.62 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=80.9
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 006997 274 SMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKE 353 (622)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 353 (622)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456778888888887766 4577888888888889999888888887642 2344445556677776666
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHh
Q 006997 354 IEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKM 424 (622)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 424 (622)
+-+.....| . ++.-...+.-.|+++++.++|.+....+. -.......|-.+.|.++.+.+
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 655555544 1 34444455566788887777766543111 111122345556666665554
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.12 E-value=0.17 Score=39.75 Aligned_cols=104 Identities=10% Similarity=-0.000 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCch------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HHHhcCChHHHHHHHHhCC--C
Q 006997 434 AVVYTSILSACSHSGMV------DDGLSFFKSMQSNFGIEPSIE-HYLCLVD------LLGRAGRFDLALKTIHEMP--V 498 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~--~ 498 (622)
..+|-..+....+.|++ ++.+++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+. .
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 34444444444444555 555566666554 3444321 1111111 1233467777777777663 1
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 006997 499 EVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNY 539 (622)
Q Consensus 499 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 539 (622)
+.=...|.....--.++|+++.|.+++.+++.+.|.....+
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 11266777777778889999999999999999988654433
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.04 E-value=0.11 Score=39.91 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=20.7
Q ss_pred HHHHHHHHHHccCCC-CCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 520 LGEYAAKNLLTLNPG-STGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 520 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
+++.+++.++...|. ..+.++.|+-.+.+.|++++|++..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444442 233344444455555555555555554443
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.65 E-value=2.6 Score=38.63 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=95.4
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHcCCCCChhhHHHHHhhh
Q 006997 68 QTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVL----KEMWVLGLELSASTFVSVVSGC 143 (622)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~t~~~ll~~~ 143 (622)
+..+..-|.+++++++|++++.+-. ..+.+.|+...|-++- +-..+.++++|..+...++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3345566788899999988765432 2344556655544443 4445567777777766666665
Q ss_pred h---------hhhhHHHHHHHHHhC-CCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChh
Q 006997 144 S---------FRQGISMHCCVYKLG-LLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVN 213 (622)
Q Consensus 144 ~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 213 (622)
. ..-..+...+-.+.| ...+|+.....+...|.+.+++.+|+..|=.-.+++...+..++.-+.+.+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 5 111222233333433 455688888899999999999999988885322233356655555554444322
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 006997 214 EAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLK 259 (622)
Q Consensus 214 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (622)
++- ...-..++ .|...+++..|..+++...+
T Consensus 185 e~d--------------lfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAP--------------LYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHH--------------HHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred cHH--------------HHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 221 11222222 34456788888777666543
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.65 E-value=1.1 Score=34.38 Aligned_cols=141 Identities=13% Similarity=0.081 Sum_probs=90.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHH
Q 006997 307 YAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKA 386 (622)
Q Consensus 307 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 386 (622)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+...++++.+-+. .|. ..+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence 34457777777777777653 24455666665555555555555555544332 111 234455555
Q ss_pred HHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCC
Q 006997 387 KEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGI 466 (622)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 466 (622)
...+-.+-. +.......++.....|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++.++ |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 554444332 344556667788888998888888888542 36788888888899999999999999999988866 65
Q ss_pred C
Q 006997 467 E 467 (622)
Q Consensus 467 ~ 467 (622)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.22 E-value=0.15 Score=40.95 Aligned_cols=125 Identities=12% Similarity=0.069 Sum_probs=66.6
Q ss_pred cCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 006997 428 EGLKPDA--VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSI-------EHYLCLVDLLGRAGRFDLALKTIHEMP- 497 (622)
Q Consensus 428 ~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~- 497 (622)
.|+.|.. .++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|+++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455543 334455666677788888887777755442333431 345556677777777777777777642
Q ss_pred ----CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 498 ----VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 498 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
.........++. . . ........+ +.+.+..+.++.+|.+.|++++|+.+++.++.
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~-------ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---S-------ASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCcccccc-c---c-------CCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 000110000000 0 0 000000111 22446778899999999999999999998754
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.16 E-value=1.4 Score=43.04 Aligned_cols=260 Identities=11% Similarity=0.040 Sum_probs=143.5
Q ss_pred cCCchhHHHHHHHHHhC-----CCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhh----cC
Q 006997 8 NGSFEETLSTYSSMLQT-----GVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYS----KC 78 (622)
Q Consensus 8 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 78 (622)
.|++++|++.+-.+.+. +..........++..|...++++...+.+..+.+..-.. ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788898888776642 222234457778899999999998888777666443122 222334443332 22
Q ss_pred CC--hhHHHHHhccCCCC---CCC-----cchHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHHHHhhhhhhhh
Q 006997 79 SD--FVSSRKVLDEMPVR---LRS-----VVSWNSIISAHSRACLNDEAILVLKEMWVLGLELSASTFVSVVSGCSFRQG 148 (622)
Q Consensus 79 ~~--~~~A~~~~~~~~~~---~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 148 (622)
.. .+.-..+.+..... .-- ......|...+...|++.+|.+++..+...-...+....
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------ 175 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------ 175 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH------------
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH------------
Confidence 22 22223333333221 111 122356778888999999999999998753222222222
Q ss_pred HHHHHHHHHhCCCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCC-----C-C----cchHHHHHHHHHcCCChhHHHHH
Q 006997 149 ISMHCCVYKLGLLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGE-----T-S----IVSWTTIIGGYVNVGNVNEAFGL 218 (622)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~----~~~~~~li~~~~~~~~~~~a~~~ 218 (622)
-...+...++.|...+++..|..++..+.. + + ...+..++..+...+++.+|.+.
T Consensus 176 ---------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 176 ---------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp ---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334556677888899999999888877632 1 1 13456677778888999998888
Q ss_pred HHHHHHC-CCCCCHhHHHHHHH----HHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc--CCHHHHHHHHhh
Q 006997 219 CNQMRRM-SVTPDLVVFLNLIL----GCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKC--GDLELARRVFDA 291 (622)
Q Consensus 219 ~~~m~~~-~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~ 291 (622)
|.+.... .+..|...+..++. ...-.+....-..++.........++...+..++.+|... .+++.+.+.|..
T Consensus 241 y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 241 LQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 8776542 11122222221111 1111111111112222222222234455666777777654 356666666665
Q ss_pred cCCC
Q 006997 292 VLEK 295 (622)
Q Consensus 292 ~~~~ 295 (622)
...+
T Consensus 321 ~L~~ 324 (445)
T 4b4t_P 321 VLNE 324 (445)
T ss_dssp STTT
T ss_pred Hhcc
Confidence 5433
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.62 E-value=4.1 Score=37.07 Aligned_cols=163 Identities=10% Similarity=0.056 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHHHHcCCCCChhhHHHHHhhh
Q 006997 68 QTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILV----LKEMWVLGLELSASTFVSVVSGC 143 (622)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~t~~~ll~~~ 143 (622)
|..+..-|.+++++++|++++..-. ..+.+.|+...|-++ .+-..+.++.++......++..+
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3445566777888888887755432 223445555444443 34444556777766665555554
Q ss_pred h---------hhhhHHHHHHHHHhC-CCCCChhhHhHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcC---C
Q 006997 144 S---------FRQGISMHCCVYKLG-LLNNEIPLANSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNV---G 210 (622)
Q Consensus 144 ~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~ 210 (622)
. ..-......+..+.| ...+++..+..+...|.+.|++.+|+..|-.-...|...+..++.-+.+. |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 3 111222233333333 24457888888889999999999988877632222444555554444433 3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHH
Q 006997 211 NVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLL 258 (622)
Q Consensus 211 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 258 (622)
...++--++ -..++ .+...+++..|..+++...
T Consensus 183 ~~~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFF--------------SRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332221111 11222 3345677778877777654
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.60 E-value=4.2 Score=37.05 Aligned_cols=181 Identities=8% Similarity=0.050 Sum_probs=105.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHH-
Q 006997 241 CAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNL- 319 (622)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~- 319 (622)
....|++-+|.+.++.+ ..=|.+.+++++|.+++.. -...+.+.|+...|-.+
T Consensus 23 ~I~~G~yYEAhQ~~Rtl---------------~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRTI---------------ANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HhhccChHHHHHHHHHH---------------HHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34456666666665544 3447888888888887643 23345566776655543
Q ss_pred ---HHHHHhCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCChHHHHHH
Q 006997 320 ---FKRLLKTSVRPNEATLATTLSACAELGSLS-KGKEIEEYIV----LNG--LESNRQVQTSLIHMFSKCGRINKAKEV 389 (622)
Q Consensus 320 ---~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 389 (622)
.+-..+.+++++......++..+.....-+ .-.++.+.++ +.| ..-++.....+...|.+.|++.+|+..
T Consensus 77 ~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 77 FYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 455556778888888877777765532211 1123333333 333 224678888899999999999999998
Q ss_pred hccCCCCChhHHHHHHHHHHHc---CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHHh
Q 006997 390 FERVPDKDLAVWSAMINGYAIH---GMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQSN 463 (622)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 463 (622)
|-.-...|...+..++--+... |...++-- . ....+--|...|+...|..+++...+.
T Consensus 157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl---------------f-~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE---------------F-FSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH---------------H-HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHH---------------H-HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 8633322344444444333332 32222111 1 111222345668889999888877644
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.46 E-value=0.65 Score=37.36 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC
Q 006997 474 LCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
..+..+|.+.|++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345566666666666666666665
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.30 E-value=1 Score=34.64 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhCC-CCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 467 EPSIEHYLCLVDLLGRAGRF---DLALKTIHEMP-VEV--QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 467 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
.|++.+--.+..++.++.+. .+++.++++.. ..| ....+--|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 45666655667777776653 45666666654 234 2556777888889999999999999999999998766544
Q ss_pred H
Q 006997 541 L 541 (622)
Q Consensus 541 ~ 541 (622)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.75 E-value=1.8 Score=33.70 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhCC-CCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 006997 467 EPSIEHYLCLVDLLGRAGRF---DLALKTIHEMP-VEV--QAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYI 540 (622)
Q Consensus 467 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 540 (622)
.|+..+--.+..++.++.+. .+++.+++... ..| .......|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45666666667777776643 45666666654 233 3456667778899999999999999999999998765544
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.28 E-value=0.82 Score=32.91 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHH
Q 006997 13 ETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLI 72 (622)
Q Consensus 13 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 72 (622)
+..+-++.+-..++-|++....+.|++|.+.+|+..|.++++-+...- .....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344444444455566666666666666666666666666666655432 22233444444
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.20 E-value=4.9 Score=38.11 Aligned_cols=88 Identities=13% Similarity=-0.064 Sum_probs=45.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCCc----hH
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP---VEVQ-----AQVWAPLLSACMKHHNVELGEYAAKNLLTLN---PGSTG----NY 539 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~----~~ 539 (622)
.++..|...|++.+|.+++.++. ...| ...+..-+..|...+|+.++...+.++.... +-+|. ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 35566666666666666665543 1111 1123333445566677777777776665421 11221 22
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHh
Q 006997 540 ILMANLFT-SAGMWKEAATARGLM 562 (622)
Q Consensus 540 ~~l~~~~~-~~g~~~~A~~~~~~~ 562 (622)
..-|.++. ..++|.+|...|-..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 23344555 667777776665544
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.18 E-value=3.1 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCChHHHHHHhccCC
Q 006997 371 TSLIHMFSKCGRINKAKEVFERVP 394 (622)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~ 394 (622)
-.+..+|..+|++++|.+.|.+..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Confidence 344555666666666666665543
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.15 E-value=22 Score=37.94 Aligned_cols=249 Identities=14% Similarity=0.081 Sum_probs=114.6
Q ss_pred HHHhcCChHHHHHHHhhcCCC----C--cchHHHHHHHHHcCCChhHHHHHHHHHHHCCC--C-----CCHhHHHHHHHH
Q 006997 174 MYAKFGKVNEARSIFDEIGET----S--IVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSV--T-----PDLVVFLNLILG 240 (622)
Q Consensus 174 ~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~~ 240 (622)
+....|+.++++.+++..... + +..=..+.-+.+..|..+++.+++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 344566777777777665431 1 11222233344555555566666666544211 0 101111222222
Q ss_pred HhccCC-hHHHHHHHHHHHHhCCCCCc--hhHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCChH
Q 006997 241 CAQVGN-LFLALSMHSLLLKSGYNNED--PLDNLLVSMYTKCGDLELARRVFDAVLEK---SVFLWTSMIGGYAQLGYPS 314 (622)
Q Consensus 241 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 314 (622)
.+-.|. -+++...+..++...- +.. ..--+|...+.-.|+.+....++..+.+. ++.-.-.+.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222222 2334444444443221 100 11112333344556666666665544221 2222233344555677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH---HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 006997 315 EAVNLFKRLLKTSVRPNEATLA---TTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAKEVFE 391 (622)
Q Consensus 315 ~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 391 (622)
.+..+.+.+.... .|. .-|. .+.-+|+..|+.....++++.+.... ..+..-...+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777777766531 122 2222 33446677778777777777776542 2223322223333444566666667766
Q ss_pred cCCC-CChhHHH--HHHHHHHHcCCH-HHHHHHHHHhHH
Q 006997 392 RVPD-KDLAVWS--AMINGYAIHGMG-DQALNLFYKMQH 426 (622)
Q Consensus 392 ~~~~-~~~~~~~--~l~~~~~~~~~~-~~a~~~~~~~~~ 426 (622)
.+.+ .|+.+-. .+.-+....|.. .++..++..+..
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5442 3333222 222233333333 566777777653
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.58 E-value=0.8 Score=43.84 Aligned_cols=61 Identities=8% Similarity=-0.063 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
....++..+...|+.+++...++.++..+|-+-..+..+..+|.+.|+..+|++.|+...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445667778889999999999999999998888999999999999999999999988765
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.33 E-value=5 Score=35.31 Aligned_cols=151 Identities=15% Similarity=0.014 Sum_probs=83.6
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHH
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPSIE----HYLCLVDLLG 481 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~ 481 (622)
...+.|+.++|++....-.+ -.| |...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR---~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH--
T ss_pred HHHhCCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH--
Confidence 34567788888877777665 344 4566667777888888888888888777643 56533 33333332
Q ss_pred hcCChHHHHHHHH--hCC-CCCcHHhHH-HHHHHH--HhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHH
Q 006997 482 RAGRFDLALKTIH--EMP-VEVQAQVWA-PLLSAC--MKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEA 555 (622)
Q Consensus 482 ~~g~~~~A~~~~~--~~~-~~~~~~~~~-~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 555 (622)
....+ ++|. +.+ ..-.+..|. .++.+. ...|+.++|.++-.++++..|..+.... |
T Consensus 78 --E~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~---------~----- 139 (273)
T 1zbp_A 78 --AQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN---------D----- 139 (273)
T ss_dssp --HHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET---------T-----
T ss_pred --HHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC---------C-----
Confidence 11111 1222 111 111122233 344443 3468888888888888888776555333 1
Q ss_pred HHHHHHhhhCCCccCCCceEEEECCeEEE
Q 006997 556 ATARGLMDDRRLTKEPGWSQVEIDGSVQV 584 (622)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (622)
.-|+-+.+.+.+.-|.+..+.+++..++
T Consensus 140 -~~F~wi~D~D~RlGpv~E~i~~~G~Y~W 167 (273)
T 1zbp_A 140 -TSFSDVRDIDDRLGGYIELFSTAGNYFL 167 (273)
T ss_dssp -EEESCEEESSTTTTTEEEEECTTSCEEE
T ss_pred -CCcchhhccccCCcceEEEEEeCCeEEE
Confidence 1144455555555555554434454444
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.55 E-value=19 Score=35.00 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=68.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhc-CCCCC---HHHHHHHHHHHhccCchHHHHHHHHHhHHh-cCCCCC----hh
Q 006997 401 WSAMINGYAIHGMGDQALNLFYKMQHVE-GLKPD---AVVYTSILSACSHSGMVDDGLSFFKSMQSN-FGIEPS----IE 471 (622)
Q Consensus 401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~p~----~~ 471 (622)
...+...|...|++.+|..++..+.... +..+. ...+...++.|...+++.+|..+++++..+ +...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3557788889999999999999986521 22221 235667778899999999999999887532 122222 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC
Q 006997 472 HYLCLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
.+...+..+...+++.+|-+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677788888999999988877663
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.89 E-value=25 Score=35.72 Aligned_cols=248 Identities=10% Similarity=0.035 Sum_probs=115.8
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChH
Q 006997 169 NSVMSMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLF 248 (622)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 248 (622)
+.-+..+.+.+++.....++.. +..+...-.....+....|+..+|......+=..| ......+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445566677888888877766 33344444556667777788777776666654443 233444555555555444332
Q ss_pred H--HHHHHHHHHHhC-----------CCCCch-hHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHH---HHHHHHHHHhcC
Q 006997 249 L--ALSMHSLLLKSG-----------YNNEDP-LDNLLVSMYTKCGDLELARRVFDAVLEKSVFL---WTSMIGGYAQLG 311 (622)
Q Consensus 249 ~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~ 311 (622)
. ...=++.+...| ++++.. ....++..+.+ ...+....... .++... +..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 2 111111111111 111111 11111111111 11122222211 111111 1111222222 3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChHHHH
Q 006997 312 YPSEAVNLFKRLLKTSVRPNEATLA----TTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRINKAK 387 (622)
Q Consensus 312 ~~~~a~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 387 (622)
+.+.|...+....... ..+..... .+.......+...++...+....... .+.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6777888887775533 22332222 22223333442344444444433322 22222333344445668888888
Q ss_pred HHhccCCCCCh--hH-HHHHHHHHHHcCCHHHHHHHHHHhHH
Q 006997 388 EVFERVPDKDL--AV-WSAMINGYAIHGMGDQALNLFYKMQH 426 (622)
Q Consensus 388 ~~~~~~~~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 426 (622)
..|..|..... .- .-=+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888775321 11 11234456677888888888887764
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.23 E-value=2.1 Score=32.73 Aligned_cols=64 Identities=9% Similarity=0.205 Sum_probs=40.8
Q ss_pred ChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCC-CCCcchHHHHHHHH
Q 006997 45 SIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVR-LRSVVSWNSIISAH 108 (622)
Q Consensus 45 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~ 108 (622)
|.-+..+-++.+....+.|++.+..+-++++-|.+|+..|.++|+.++.. .+...+|..+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 34456666666666666677777777777777777777777777766544 33344566666543
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.08 E-value=35 Score=36.46 Aligned_cols=259 Identities=12% Similarity=0.054 Sum_probs=127.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCc--hhHHHHHHHHHhcCCHHHHHHHHhhcCC-CC----------HHHHHHHHHH
Q 006997 240 GCAQVGNLFLALSMHSLLLKSGYNNED--PLDNLLVSMYTKCGDLELARRVFDAVLE-KS----------VFLWTSMIGG 306 (622)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l~~~ 306 (622)
+....|+.+++..++......+-..+. ..-..+.-+...+|..+++..++..... .+ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455667777776666554332101121 2223344445556655566665554322 12 1112233333
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCh
Q 006997 307 YAQLGY-PSEAVNLFKRLLKTSVRPNEATLA--TTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGRI 383 (622)
Q Consensus 307 ~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 383 (622)
++..|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. ..+..-...+.-++.-.|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 433343 2456666666655321 1111122 22333456677777777777766532 11222222233333456777
Q ss_pred HHHHHHhccCCC-CChh-HHH---HHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 006997 384 NKAKEVFERVPD-KDLA-VWS---AMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFK 458 (622)
Q Consensus 384 ~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 458 (622)
+.+..+++.+.. .++. -|. ++..+|+..|+.....+++..+.+ . ...+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-D-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-C-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-C-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 777666665542 2332 222 233466777887777778888775 1 11222223333334555666666666666
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCcHHh
Q 006997 459 SMQSNFGIEPSIEHYLCLVDLLGRAGRF-DLALKTIHEMPVEVQAQV 504 (622)
Q Consensus 459 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 504 (622)
.+.+. ..|.+..-.++.-+....|.. .++++.+..+...++..+
T Consensus 619 ~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 619 LLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp TGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 55532 244444334444444445543 577777777764555443
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.08 E-value=4.1 Score=29.14 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=63.5
Q ss_pred ccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 006997 42 NINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVL 121 (622)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 121 (622)
.....++|..|-+.+...+. ...+--..++.+...|++++|..+.+... .||...|-+|-. .+.|-.+++...+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 34567889999888887752 44444455667889999999999999999 899999988876 4678888888888
Q ss_pred HHHHHcC
Q 006997 122 KEMWVLG 128 (622)
Q Consensus 122 ~~m~~~~ 128 (622)
.++-.+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7777655
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.05 E-value=6.7 Score=28.12 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006997 246 NLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLK 325 (622)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 325 (622)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 34555555555554442 333333344567788999999999999888999988877644 67888888888877777
Q ss_pred CCCCCCHHHHH
Q 006997 326 TSVRPNEATLA 336 (622)
Q Consensus 326 ~~~~~~~~~~~ 336 (622)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45544443
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.53 E-value=7.2 Score=28.00 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006997 246 NLFLALSMHSLLLKSGYNNEDPLDNLLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLLK 325 (622)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 325 (622)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 34555555555554442 333333344567788999999999999998999998877654 66777777777777766
Q ss_pred CCCCCCHHHHH
Q 006997 326 TSVRPNEATLA 336 (622)
Q Consensus 326 ~~~~~~~~~~~ 336 (622)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.30 E-value=0.77 Score=40.37 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 006997 480 LGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNP 533 (622)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 533 (622)
+.+.|++++|++.+..-. .+.|...-..|+..++-.|++++|.+-++.+.+++|
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 334455555555444332 222333334444555555555555555555555555
No 263
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.16 E-value=4.3 Score=29.10 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=62.6
Q ss_pred ccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 006997 42 NINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVL 121 (622)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 121 (622)
.....++|..|-+.+...+. ...+--..++.+...|++++|..+.+... .||...|-+|-.+ +.|-.+++...+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 34567889999888887752 44444455667889999999999999999 8999999888764 567777777777
Q ss_pred HHHHHcC
Q 006997 122 KEMWVLG 128 (622)
Q Consensus 122 ~~m~~~~ 128 (622)
.++-.+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7776654
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.53 E-value=8.4 Score=27.83 Aligned_cols=63 Identities=8% Similarity=0.156 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 006997 211 NVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVS 274 (622)
Q Consensus 211 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (622)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344566667777777788888888888888888888888888888876542 222445665543
No 265
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.72 E-value=6.3 Score=37.56 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHhccCchHHHHHHHHHhHH----hcCCCCChhHHH
Q 006997 402 SAMINGYAIHGMGDQALNLFYKMQHVEGLKP-DAVVYTSILSACSHSGMVDDGLSFFKSMQS----NFGIEPSIEHYL 474 (622)
Q Consensus 402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~ 474 (622)
..++..+...|++.+|+..+..+.. ..| +...+..++.++...|+..+|++.|+...+ ..|+.|.+.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~---~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3355667778888888888888776 445 567888888888888888888888877543 358888876543
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=83.79 E-value=18 Score=30.21 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 504 VWAPLLSACMKHHNVELGEYAAKNLLT--LNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 504 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.|..++..+ ..++...+..+|..+.. +.-..+..|...+..+...|++.+|.++|+.-++++-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444444443 23446788888888876 4555677888999999999999999999997776544
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.49 E-value=27 Score=32.03 Aligned_cols=164 Identities=10% Similarity=0.101 Sum_probs=93.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 006997 272 LVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNL----FKRLLKTSVRPNEATLATTLSACAELGS 347 (622)
Q Consensus 272 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 347 (622)
+..=|.+.+++++|.+++.. -...+.+.|+...+-.+ ++-..+.++++|..+...++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33447788888888887543 12344556666554443 3445556777888777777776655443
Q ss_pred hH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 006997 348 LS-KGKEIEEYIV----LNG--LESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNL 420 (622)
Q Consensus 348 ~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 420 (622)
-+ .=..+.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..+..++.-+...+...+
T Consensus 110 ~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e---- 185 (336)
T 3lpz_A 110 GEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT---- 185 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG----
T ss_pred CCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc----
Confidence 11 1122333333 333 234677888899999999999999999853222233455444433333221111
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHhccCchHHHHHHHHHhHH
Q 006997 421 FYKMQHVEGLKPDAVVYTSILSACSHSGMVDDGLSFFKSMQS 462 (622)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 462 (622)
++.. ....+--|...++...|..+++...+
T Consensus 186 -----------~dlf-iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLY-CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHH-HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1112 22223345556788888887766554
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.36 E-value=31 Score=32.65 Aligned_cols=282 Identities=12% Similarity=0.057 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhcCCC--------CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHH---
Q 006997 268 LDNLLVSMYTKCGDLELARRVFDAVLEK--------SVFLWTSMIGGYAQLG-YPSEAVNLFKRLLKTSVRPNEATL--- 335 (622)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~--- 335 (622)
....|...|.+.|+.++..+++.....- ....-..++..+.... ..+.-.++..+..+... -+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4567788888888888888888766431 2233455666665533 23333444444433110 011122
Q ss_pred ---HHHHHHHhccCChHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCChHHHHHHhccCCC------CChhHH
Q 006997 336 ---ATTLSACAELGSLSKGKEIEEYIVLNGLESN-----RQVQTSLIHMFSKCGRINKAKEVFERVPD------KDLAVW 401 (622)
Q Consensus 336 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~ 401 (622)
..++..|...|++.+|.+++..+.+.-...| ..++-.-+.+|...+++.++...+..... +++..-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1455666677777777666666654311111 23344445556666666666666654321 122211
Q ss_pred HH--HHH--HHH-HcCCHHHHHHHHHHhHHhcCCCCCHH------HHHHHHHHHhccCchHHHHHHHH-HhHHhcCCCCC
Q 006997 402 SA--MIN--GYA-IHGMGDQALNLFYKMQHVEGLKPDAV------VYTSILSACSHSGMVDDGLSFFK-SMQSNFGIEPS 469 (622)
Q Consensus 402 ~~--l~~--~~~-~~~~~~~a~~~~~~~~~~~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~p~ 469 (622)
.. ... .+. ..+++..|...|-+..+... ..+.. .|..+. +.. .++..+...++. .....+ ..|.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~-~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~~-~~pe 255 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD-SVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAITY-SGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHTT-CSHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhcccccccc-CCcc
Confidence 11 111 123 45666666666655543111 11111 121111 111 122222222221 111111 2333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhH---HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHH
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVW---APLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMAN 544 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 544 (622)
...+..++.+| ..+++.+..++++... ...|+... ..|..... ...+.++ ..|-..-.+..++.
T Consensus 256 i~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 256 IDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHHHHH
Confidence 44444444443 3455555555555443 22233211 11111000 1111112 24555556666666
Q ss_pred HHHhcCChHHHHHHHHHhhhCCC
Q 006997 545 LFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 545 ~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
.+.- ..+++...+-+|+..|.
T Consensus 325 ~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHCc--CHHHHHHHHHHHHHCCC
Confidence 6543 68899999999987654
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.99 E-value=23 Score=39.49 Aligned_cols=142 Identities=13% Similarity=0.057 Sum_probs=68.1
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCC-------------------
Q 006997 372 SLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKP------------------- 432 (622)
Q Consensus 372 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p------------------- 432 (622)
.++..+.+.+.++-+.++..-... ++..--.+..+|...|++++|.+.|++... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhccccccccccc
Confidence 344445555555555554443332 222222344455566666666666655421 1100
Q ss_pred ----CHHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-C--hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCcHHh
Q 006997 433 ----DAVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-S--IEHYLCLVDLLGRAGRFDLALKTIHEMP-VEVQAQV 504 (622)
Q Consensus 433 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 504 (622)
-..-|..++..+.+.+.++.+.++-+.+.+..+-.+ + ...|..+.+.+...|++++|...+-.++ ..-....
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 012355555666666666666666555544311111 0 1135555566666666666666665554 2222445
Q ss_pred HHHHHHHHHhcC
Q 006997 505 WAPLLSACMKHH 516 (622)
Q Consensus 505 ~~~l~~~~~~~~ 516 (622)
+..|+...+..|
T Consensus 974 Lr~LV~~lce~~ 985 (1139)
T 4fhn_B 974 LLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhCC
Confidence 555555544444
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.37 E-value=7.6 Score=40.41 Aligned_cols=51 Identities=16% Similarity=0.042 Sum_probs=36.3
Q ss_pred HHHHcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHh
Q 006997 407 GYAIHGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSM 460 (622)
Q Consensus 407 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 460 (622)
-+...|+++-|+++-++... ..|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34556777777777777776 5665 457777777777777777777777665
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.56 E-value=25 Score=29.63 Aligned_cols=146 Identities=16% Similarity=0.067 Sum_probs=66.3
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHhccCchHH
Q 006997 373 LIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACSHSGMVDD 452 (622)
Q Consensus 373 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 452 (622)
.+..+.+.+..+....+.+.+..++...-...+.++...++.+ +...+.++.. .++...-...+.++.+.++.+
T Consensus 39 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~- 112 (211)
T 3ltm_A 39 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSAAVALGQIGDER- 112 (211)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-
T ss_pred HHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCcHH-
Confidence 3333344443333333333334444444444444555555432 2222222221 245555555555555555532
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 006997 453 GLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT 530 (622)
Q Consensus 453 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 530 (622)
+...+..+.. .++..+-...+.++.+.|..+ +...+.++...++...-...+.+....++ ..+...+.++++
T Consensus 113 ~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 113 AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 2333333331 455555555666666666543 33333333345565555555556655554 344444444443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.62 E-value=19 Score=27.69 Aligned_cols=62 Identities=8% Similarity=0.147 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCchhHHHHHH
Q 006997 212 VNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNNEDPLDNLLVS 274 (622)
Q Consensus 212 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (622)
.-+..+-++.+....+.|++......+++|.+.+|+..|.++++-++..- .+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33456667777777888999999999999999999999999998887653 233455665553
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=76.02 E-value=19 Score=28.59 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=37.0
Q ss_pred HHHHHHHHHcc--CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 521 GEYAAKNLLTL--NPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 521 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
+..+|+.+... .-..+..|...+..+...|++++|.++|+.-++++-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 77788887764 445667788889999999999999999997776544
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.45 E-value=7.1 Score=37.82 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=37.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP--SIEHYLCLVDLLGRAGRFDLALKTIHEM 496 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 496 (622)
+...+...|.+.|+++.|.+.+.++... ...+ -...+-..++.+...+++..+...++++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK-AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4556666777777777777777776643 2222 2445555666666666766666666665
No 275
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.83 E-value=35 Score=28.34 Aligned_cols=152 Identities=16% Similarity=0.072 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHh
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAVVYTSILSACS 445 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 445 (622)
+..+-...+..+.+.+..+....+.+.+..++...-...+.++...+..+ +...+..+.. .++...-...+.++.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSAAVALG 101 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHH
Confidence 33333334444444444333444444444555555555555566555543 3333333332 356666666666666
Q ss_pred ccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 006997 446 HSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAA 525 (622)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 525 (622)
..++.+ +...+..+.. .++..+-...+.++.+.|..+ +...+.++...++...-...+.+....|+ +.+...+
T Consensus 102 ~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L 174 (201)
T 3ltj_A 102 QIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAM 174 (201)
T ss_dssp HHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHH
T ss_pred HhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 666543 3333333331 456666666667777766643 44444444335666666666666666665 3355555
Q ss_pred HHHH
Q 006997 526 KNLL 529 (622)
Q Consensus 526 ~~~~ 529 (622)
..++
T Consensus 175 ~~~l 178 (201)
T 3ltj_A 175 EKLA 178 (201)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=71.09 E-value=72 Score=32.63 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=38.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSK--- 379 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 379 (622)
....+.-.|+++.|++.+-.. ...+.+.+...+..+.-.+- . +.+..........-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~----~~lls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---D----SSTRLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---C----CcccccCCCcccccHHHHHHHHHHHhh
Confidence 455666778888888877644 23445555444444332221 1 111111000012225566777764
Q ss_pred cCChHHHHHHhccCC
Q 006997 380 CGRINKAKEVFERVP 394 (622)
Q Consensus 380 ~~~~~~A~~~~~~~~ 394 (622)
..++..|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 467777777666553
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=70.86 E-value=26 Score=28.19 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=35.8
Q ss_pred HHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 521 GEYAAKNLLT--LNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 521 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
+..+|+.+.. +.-..+..|...+..+...|++.+|.++|+.-++++.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5567777765 4455667788888888889999999999987777554
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.95 E-value=44 Score=32.22 Aligned_cols=62 Identities=10% Similarity=0.114 Sum_probs=41.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC--CHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 006997 198 SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTP--DLVVFLNLILGCAQVGNLFLALSMHSLLLK 259 (622)
Q Consensus 198 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 259 (622)
++..+...|.+.|+++.|.+.|.+++..-..+ -...+..+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56667777778888888888888877642222 234556666677777777777777666543
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.68 E-value=61 Score=27.04 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC
Q 006997 411 HGMGDQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS 469 (622)
Q Consensus 411 ~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 469 (622)
.+...++..+|..|.. .|+.-. ..-|......+...|++.+|.++|+.-++. +-.|-
T Consensus 92 ~~~~~~p~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFN-KGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHH-HTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred ccccCCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3446688888888887 777766 455777777778888888888888887765 55553
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.67 E-value=94 Score=27.20 Aligned_cols=52 Identities=10% Similarity=-0.107 Sum_probs=26.2
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhcCCCCch---hHHHHHHHhhcCCChhHHHHHhcc
Q 006997 35 LVLKACANINSIWDGKRVHSHVLKVGFQQDAF---VQTGLIDMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~ 90 (622)
+.+...++.|+.+... .+.+.|..++.. .-...+...+..|+.+-+..+++.
T Consensus 7 ~~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 3444555666665443 344445433321 112345555666776666666654
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.11 E-value=1e+02 Score=26.90 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCCCCcc---cHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCch--hHHHHHHHhhcCCChhHHHHHhcc
Q 006997 16 STYSSMLQTGVHGNSF---TFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAF--VQTGLIDMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~ 90 (622)
++++.+.+.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++.. .-...+...+..|..+-+..+++.
T Consensus 19 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 19 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3455555666555433 1123444445556654 455555666544422 112334444556666666666554
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.87 E-value=57 Score=32.04 Aligned_cols=67 Identities=9% Similarity=-0.032 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCcH------HhH-HHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 006997 470 IEHYLCLVDLLGRAGRFDLALKTIHEMPVEVQA------QVW-APLLSACMKHHNVELGEYAAKNLLTLNPGST 536 (622)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 536 (622)
...++.+++.|...+.++.|..++.+...+... ..| .-++..+..++++.+|.+.+..++...|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 455667777777778888888888776522111 111 1233445556777777777777777666543
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.19 E-value=88 Score=26.58 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=27.1
Q ss_pred HHHhhccCChhhHHHHHHHHHHhcCCCCch--hHHHHHHHhhcCCChhHHHHHhcc
Q 006997 37 LKACANINSIWDGKRVHSHVLKVGFQQDAF--VQTGLIDMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~ 90 (622)
|...+..|+.+.+..+++.+.+.|..++.. .-...+...+..|+.+-+..+++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 333445567766666666665555433321 112233444555666555555543
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.29 E-value=43 Score=32.88 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC----h--hHHH-HHHHHHHhcCChHHHHHHHHhCC
Q 006997 434 AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS----I--EHYL-CLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 434 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
...++.+++.|...+.++.|..+..+.. ++.+ . ..|. .+...+.-.+++.+|.+.+..+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3568899999999999999999998774 1211 1 2222 45677788999999999998765
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=53.77 E-value=73 Score=27.02 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=12.7
Q ss_pred HHHHhhcCCChhHHHHHhccCC
Q 006997 71 LIDMYSKCSDFVSSRKVLDEMP 92 (622)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~~~~ 92 (622)
.+...++.|+.+-+.-+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 4445566666666666665433
No 286
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=53.02 E-value=11 Score=26.32 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCC
Q 006997 593 HLSVDIRKTLKELHIKLLEAGYIAEA 618 (622)
Q Consensus 593 ~~~~~~~~~l~~~~~~~~~~g~~pd~ 618 (622)
++..+++..+.+...+++..|+.||-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDI 38 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDI 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 34567788888999999999999993
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=52.60 E-value=1.2e+02 Score=26.77 Aligned_cols=50 Identities=10% Similarity=-0.063 Sum_probs=23.6
Q ss_pred HHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhHHHHHhcc
Q 006997 37 LKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 90 (622)
|...+..|+.+.+. .+++.|..++..--...+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 35 SYYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 33344456654433 334444433332222344445556666666655554
No 288
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.29 E-value=54 Score=27.11 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=23.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 006997 508 LLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTS 548 (622)
Q Consensus 508 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 548 (622)
....|.+.|.+++|.+++++..+..|.+...-.-|..+-.+
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~ 163 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQ 163 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHT
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34467788888888888888777766555555444444333
No 289
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=51.55 E-value=38 Score=33.29 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChHHHH
Q 006997 515 HHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWKEAA 556 (622)
Q Consensus 515 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 556 (622)
...++.|...|.++..+.|++...|+.||-+....|+.-+|.
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~ 206 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI 206 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence 334445555555555555555555555555555555444444
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.65 E-value=63 Score=27.93 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=14.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 006997 203 IGGYVNVGNVNEAFGLCNQMRR 224 (622)
Q Consensus 203 i~~~~~~~~~~~a~~~~~~m~~ 224 (622)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 5666667777777777666543
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.99 E-value=1.2e+02 Score=32.98 Aligned_cols=62 Identities=3% Similarity=-0.154 Sum_probs=37.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--C-CC----------------------cHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006997 475 CLVDLLGRAGRFDLALKTIHEMP--V-EV----------------------QAQVWAPLLSACMKHHNVELGEYAAKNLL 529 (622)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~~~--~-~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 529 (622)
.+..+|...|++++|..+|+++. . .+ ...-|..++..+.+++-++-+.+..+.++
T Consensus 845 v~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI 924 (950)
T 4gq2_M 845 LKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLAD 924 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45556666666666666666553 0 00 11245566666677788888888888877
Q ss_pred c-cCCCCC
Q 006997 530 T-LNPGST 536 (622)
Q Consensus 530 ~-~~p~~~ 536 (622)
+ +.++++
T Consensus 925 ~~~~~dd~ 932 (950)
T 4gq2_M 925 ASKETDDE 932 (950)
T ss_dssp HTCCSCCH
T ss_pred hhcccCCc
Confidence 6 344443
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.82 E-value=75 Score=27.02 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 006997 519 ELGEYAAKNLLT--LNPGSTGNYILMANLFTSAGMWKEAATARGLMDDRRL 567 (622)
Q Consensus 519 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 567 (622)
+.+..+|+.+.. +.-..+..|...+..+...|++.+|.++|+.-++++-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 355677777765 4445667788888888888888888888887666544
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=44.04 E-value=86 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=31.0
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHH
Q 006997 179 GKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAF 216 (622)
Q Consensus 179 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 216 (622)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888999999999998899999999987777655543
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.75 E-value=1.3e+02 Score=24.60 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=9.5
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCC
Q 006997 290 DAVLEKSVFLWTSMIGGYAQLGY 312 (622)
Q Consensus 290 ~~~~~~~~~~~~~l~~~~~~~~~ 312 (622)
+.+..++.......+.++...+.
T Consensus 52 ~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 52 KALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHhhCC
Confidence 33334444443444444444443
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.27 E-value=1.4e+02 Score=24.72 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCC
Q 006997 366 NRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGM 413 (622)
Q Consensus 366 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 413 (622)
+..+-...+.++.+.|..+....+...+..++...-...+.++...+.
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333444444444444443322223333333444333334444444443
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.69 E-value=1.2e+02 Score=23.88 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC
Q 006997 415 DQALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP 468 (622)
Q Consensus 415 ~~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p 468 (622)
+++..+|..|.. .|+-.. +.-|......+...|++.+|.++|+.-++. +-.|
T Consensus 82 ~dp~~if~~L~~-~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYN-HGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEP 134 (152)
T ss_dssp SCHHHHHHHHHT-TTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred CCHHHHHHHHHH-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 347778888877 777666 355677777777888888888888877765 5555
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.32 E-value=1.1e+02 Score=26.37 Aligned_cols=52 Identities=13% Similarity=-0.103 Sum_probs=28.0
Q ss_pred HhhccCChhhHHHHHHHHHHhcCCCCchh-------HHHHHHHhh--cCCChhHHHHHhcc
Q 006997 39 ACANINSIWDGKRVHSHVLKVGFQQDAFV-------QTGLIDMYS--KCSDFVSSRKVLDE 90 (622)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~A~~~~~~ 90 (622)
..++.|+.+....+++.+.+.|...+... .+.|..+.. +.|..+-+..+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 33456777777777777776665444322 223332221 45666666555553
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.29 E-value=1.4e+02 Score=24.35 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=10.2
Q ss_pred hhcCCChhHHHHHhccCC
Q 006997 75 YSKCSDFVSSRKVLDEMP 92 (622)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~ 92 (622)
.+..|+.+....+++.-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345566666666665443
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.58 E-value=1.2e+02 Score=23.98 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=44.8
Q ss_pred HhHHHHHHHhcCChHHHHHHHhhcCCCCc---chHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCCCHhH
Q 006997 168 ANSVMSMYAKFGKVNEARSIFDEIGETSI---VSWTTIIGGYVNVGN--VNEAFGLCNQMRRMSVTPDLVV 233 (622)
Q Consensus 168 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 233 (622)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 36788889999999999999999976632 234445555555322 4567788888877765544433
No 300
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.51 E-value=2.3e+02 Score=26.32 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHH
Q 006997 270 NLLVSMYTKCGDLELARRVFDAVLEKS---VFLWTSMIGGYAQLGY--PSEAVNLFKRLLKTSVRPNEATL 335 (622)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~ 335 (622)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+....++..+...|+-+.....
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 456677888899999999999887663 2344555555555433 35677888888887765544433
No 301
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=40.34 E-value=1.7e+02 Score=24.70 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=7.0
Q ss_pred HhcCChHHHHHHHhh
Q 006997 176 AKFGKVNEARSIFDE 190 (622)
Q Consensus 176 ~~~g~~~~A~~~~~~ 190 (622)
+..|+.+-+..+++.
T Consensus 152 ~~~~~~~~~~~Ll~~ 166 (237)
T 3b7b_A 152 AFSGCVDIAEILLAA 166 (237)
T ss_dssp HHHCCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHc
Confidence 344555544444443
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=40.10 E-value=1.7e+02 Score=24.62 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=5.3
Q ss_pred hcCChHHHHHHHh
Q 006997 177 KFGKVNEARSIFD 189 (622)
Q Consensus 177 ~~g~~~~A~~~~~ 189 (622)
..|+.+-+..+++
T Consensus 118 ~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 118 QFGHTSIVAYLIA 130 (240)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCHHHHHHHHHh
Confidence 3344444433333
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.56 E-value=1.2e+02 Score=26.07 Aligned_cols=23 Identities=13% Similarity=-0.188 Sum_probs=15.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 006997 303 MIGGYAQLGYPSEAVNLFKRLLK 325 (622)
Q Consensus 303 l~~~~~~~~~~~~a~~~~~~m~~ 325 (622)
-+..+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35566777777777777766543
No 304
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=38.25 E-value=1.6e+02 Score=23.83 Aligned_cols=82 Identities=18% Similarity=0.239 Sum_probs=50.5
Q ss_pred HHhcCChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHc-----------------cCCCCCc-hHHH
Q 006997 480 LGRAGRFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLT-----------------LNPGSTG-NYIL 541 (622)
Q Consensus 480 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------~~p~~~~-~~~~ 541 (622)
+.-.|.+..++-++.... .....-|..| ++.+.+|+..|...++.+++ ++|.+.+ .+..
T Consensus 43 LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 344566666666665543 1122222222 44556677777777777663 2344444 4667
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh
Q 006997 542 MANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 542 l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
++.++...|+.+||+..+..--.
T Consensus 120 ~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhhcC
Confidence 89999999999999999876544
No 305
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.95 E-value=1.5e+02 Score=28.33 Aligned_cols=326 Identities=14% Similarity=0.147 Sum_probs=155.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhcCCCCcch--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHh--HHHHHHHHHhccC
Q 006997 170 SVMSMYAKFGKVNEARSIFDEIGETSIVS--WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLV--VFLNLILGCAQVG 245 (622)
Q Consensus 170 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~ 245 (622)
+.+...+..|+.+-+..+++.-..++... ..+.+...+..|+.+-+.-++ +.|..++.. .-.+.+...+..|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCC
Confidence 34555677899999999988755443321 123344455667765444444 444444321 1223455556667
Q ss_pred ChHHHHHHHHHHHHhCCCCCch--hHHHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHH
Q 006997 246 NLFLALSMHSLLLKSGYNNEDP--LDNLLVSMYTKCGDLELARRVFDAVLEK---SVFLWTSMIGGYAQLGYPSEAVNLF 320 (622)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 320 (622)
+.+-+ +.+.+.|..++.. ...+.+...+..|+.+.+..+++.-... +...++. +...+..|+.+-+
T Consensus 92 ~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v---- 162 (437)
T 1n11_A 92 HTNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVRVA---- 162 (437)
T ss_dssp CHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHHH----
T ss_pred CHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHHHH----
Confidence 76544 4445556544322 1123444566778888888887764332 2222233 3334556665443
Q ss_pred HHHHhCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCChHHHHHHhccCCC
Q 006997 321 KRLLKTSVRPNEA---TLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQV--QTSLIHMFSKCGRINKAKEVFERVPD 395 (622)
Q Consensus 321 ~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~ 395 (622)
+.+.+.|..++.. ..+. +...+..|+.+ +.+.+.+.+..++... ..+.+...+..|+.+-+..+++.-..
T Consensus 163 ~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 237 (437)
T 1n11_A 163 ELLLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237 (437)
T ss_dssp HHHHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4444555444321 1122 22334455554 4445555554443211 12234445667888877777765432
Q ss_pred C---ChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCH---HHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC
Q 006997 396 K---DLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDA---VVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS 469 (622)
Q Consensus 396 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 469 (622)
. +..-.+. +...+..|+.+-+.-+ .+ .|..++. ...+ .+...+..|..+-+..+++ . |..++
T Consensus 238 ~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~-~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~----~-g~~~~ 305 (437)
T 1n11_A 238 ANAESVQGVTP-LHLAAQEGHAEMVALL----LS-KQANGNLGNKSGLT-PLHLVAQEGHVPVADVLIK----H-GVMVD 305 (437)
T ss_dssp TTCCCTTCCCH-HHHHHHTTCHHHHHHH----HT-TTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----H-TCCTT
T ss_pred CCCCCCCCCCH-HHHHHHCCCHHHHHHH----Hh-cCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHh----C-CccCC
Confidence 2 2222222 2334456665544333 33 3433331 1122 2233334566554444433 2 44433
Q ss_pred h---hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006997 470 I---EHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSACMKHHNVELGEYAAKN 527 (622)
Q Consensus 470 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 527 (622)
. .-.+ .+...+..|+.+-+.-+++.-. ...+...++.|. .....|+.+-...+++.
T Consensus 306 ~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 306 ATTRMGYT-PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp CCCSSCCC-HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred CCCCCCCC-HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHHHHHHHHHC
Confidence 2 1112 2333456777776666666432 122222233333 33456776655555543
No 306
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.75 E-value=2.4e+02 Score=26.73 Aligned_cols=315 Identities=14% Similarity=0.146 Sum_probs=150.5
Q ss_pred hHHHHHHHHHhCCCCCChh--hHhHHHHHHHhcCChHHHHHHHhhcCCCC---cchHHHHHHHHHcCCChhHHHHHHHHH
Q 006997 148 GISMHCCVYKLGLLNNEIP--LANSVMSMYAKFGKVNEARSIFDEIGETS---IVSWTTIIGGYVNVGNVNEAFGLCNQM 222 (622)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m 222 (622)
-.++.+.+++.|..+ +.. ...+.+...+..|+.+-+..+++.-...+ ...++. +...+..|+.+-+ +.+
T Consensus 26 ~~~~v~~Ll~~g~~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~L 99 (437)
T 1n11_A 26 HLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTNMV----KLL 99 (437)
T ss_dssp CHHHHHHHHHTTCCS-CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHHHH----HHH
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHH----HHH
Confidence 345666667777655 321 12344556677899988888887654432 222333 3444556665433 334
Q ss_pred HHCCCCCCHhH--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc--hhHHHHHHHHHhcCCHHHHHHHHhhcCCCCH-
Q 006997 223 RRMSVTPDLVV--FLNLILGCAQVGNLFLALSMHSLLLKSGYNNED--PLDNLLVSMYTKCGDLELARRVFDAVLEKSV- 297 (622)
Q Consensus 223 ~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~- 297 (622)
.+.|..|+... -.+.+...+..|+.+.+..++ +.+..++. ....+.+...+..|+.+-+.-+++.-..++.
T Consensus 100 l~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~ 175 (437)
T 1n11_A 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175 (437)
T ss_dssp HHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred HhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC
Confidence 44455444221 123445555667776655554 34432221 1112344556677888887777775433321
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchh--HH
Q 006997 298 --FLWTSMIGGYAQLGYPSEAVNLFKRLLKTSVRPNEA---TLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQ--VQ 370 (622)
Q Consensus 298 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~ 370 (622)
...+. +...+..|+.+ +++.+.+.|..++.. ..+. +...+..|+.+.+. .+.+.|..++.. .-
T Consensus 176 ~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 176 GKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVAR----SLLQYGGSANAESVQG 245 (437)
T ss_dssp CSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTC
T ss_pred CCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCCCCCCC
Confidence 12222 33334566654 344445555444321 1222 33344556655444 444454333321 11
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCCCHH---HHHHHHHHH
Q 006997 371 TSLIHMFSKCGRINKAKEVFERVPDKD---LAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLKPDAV---VYTSILSAC 444 (622)
Q Consensus 371 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~---~~~~ll~~~ 444 (622)
.+.+...+..|..+-+..+++.-..++ ..-.+. +...+..|+.+-+.-+ .+ .|..++.. -.+. +...
T Consensus 246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~-~g~~~~~~~~~g~t~-L~~A 318 (437)
T 1n11_A 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVL----IK-HGVMVDATTRMGYTP-LHVA 318 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHH----HH-HTCCTTCCCSSCCCH-HHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHH----Hh-CCccCCCCCCCCCCH-HHHH
Confidence 123344556788887777776544322 222222 3334456666544433 33 44444321 1222 3333
Q ss_pred hccCchHHHHHHHHHhHHhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHh
Q 006997 445 SHSGMVDDGLSFFKSMQSNFGIEPSIE---HYLCLVDLLGRAGRFDLALKTIHE 495 (622)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 495 (622)
+..|+.+-+.-+++ . |..++.. -.+. +....+.|+.+-+.-+++.
T Consensus 319 ~~~g~~~~v~~Ll~----~-gad~n~~~~~g~t~-L~~A~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 319 SHYGNIKLVKFLLQ----H-QADVNAKTKLGYSP-LHQAAQQGHTDIVTLLLKN 366 (437)
T ss_dssp HHSSCSHHHHHHHH----T-TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHh----c-CCCCCCCCCCCCCH-HHHHHHCChHHHHHHHHHC
Confidence 45566654444443 2 4444321 1222 2333456666555555543
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.46 E-value=1.5e+02 Score=23.38 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHH
Q 006997 270 NLLVSMYTKCGDLELARRVFDAVLEKS---VFLWTSMIGGYAQLGY--PSEAVNLFKRLLKTSVRPNEA 333 (622)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 333 (622)
..++.-|...|+.++|...++++..|. ......+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456777888888888888888887652 2344445555555332 456777888887777554443
No 308
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.95 E-value=1.6e+02 Score=23.58 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHhcCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHhHHhcCCCCC
Q 006997 416 QALNLFYKMQHVEGLKPD-AVVYTSILSACSHSGMVDDGLSFFKSMQSNFGIEPS 469 (622)
Q Consensus 416 ~a~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 469 (622)
+...+|..|.. .|+-.. +..|......+...|++.+|.++|+.-++. +-.|.
T Consensus 78 ~p~~if~~L~~-~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHN-QGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPL 130 (164)
T ss_dssp CHHHHHHHHHH-TTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHH-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcH
Confidence 36677888887 777766 455777777778888888888888887765 55664
No 309
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=36.92 E-value=70 Score=21.67 Aligned_cols=41 Identities=15% Similarity=0.405 Sum_probs=31.3
Q ss_pred HHHhccCCCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 006997 85 RKVLDEMPVRLRSVVSWNSIISAHSRACLNDEAILVLKEMW 125 (622)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 125 (622)
..++++++..+|++.||+-+...+-+..-..+++.+.+++-
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45778888888999999998887666666677777766654
No 310
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.73 E-value=2.2e+02 Score=25.07 Aligned_cols=18 Identities=6% Similarity=-0.119 Sum_probs=9.3
Q ss_pred HHhhcCCChhHHHHHhcc
Q 006997 73 DMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~ 90 (622)
...+..|+.+-+..+++.
T Consensus 36 ~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334455665555555554
No 311
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.61 E-value=2.2e+02 Score=24.94 Aligned_cols=18 Identities=11% Similarity=-0.154 Sum_probs=7.7
Q ss_pred CChhHHHHHHHHHHhcCC
Q 006997 468 PSIEHYLCLVDLLGRAGR 485 (622)
Q Consensus 468 p~~~~~~~l~~~~~~~g~ 485 (622)
++..+-...+.++.+.|+
T Consensus 204 ~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 334444444444444443
No 312
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=35.46 E-value=1.4e+02 Score=25.05 Aligned_cols=48 Identities=13% Similarity=0.265 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhHHhcCCCCC-hhHHH-----HHHHHHHhcCChHHHHHHHHhCC
Q 006997 450 VDDGLSFFKSMQSNFGIEPS-IEHYL-----CLVDLLGRAGRFDLALKTIHEMP 497 (622)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 497 (622)
++.|+.+|+.+.....+..+ ..... ..+-.|.+.|.+++|.+++++..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 45566666666554222111 11111 23345667777777777777665
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.41 E-value=1.9e+02 Score=24.00 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=38.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-----hHHHHHHHHHHHHcCCC
Q 006997 308 AQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGS-----LSKGKEIEEYIVLNGLE 364 (622)
Q Consensus 308 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 364 (622)
.+..+++.|+-.+-+|++.| .|....=..++.+....|. ...|...++.....|.|
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999 7766666666667666554 33444555555556644
No 314
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.96 E-value=87 Score=21.27 Aligned_cols=61 Identities=5% Similarity=0.089 Sum_probs=41.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhccC-ChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCC
Q 006997 19 SSMLQTGVHGNSFTFPLVLKACANIN-SIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSD 80 (622)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (622)
+.+.+.|++.++.- ..++..+...+ ..-.+.++++.+.+.+...+..|-...+..+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34667787776644 45666666654 567788899988877655566666666777666654
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.47 E-value=1.9e+02 Score=23.53 Aligned_cols=19 Identities=11% Similarity=0.157 Sum_probs=13.1
Q ss_pred HHHhcCChHHHHHHHhhcC
Q 006997 174 MYAKFGKVNEARSIFDEIG 192 (622)
Q Consensus 174 ~~~~~g~~~~A~~~~~~~~ 192 (622)
..+..|+.+....++..-.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3456778888888877654
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.71 E-value=2.1e+02 Score=23.99 Aligned_cols=12 Identities=8% Similarity=0.191 Sum_probs=4.7
Q ss_pred cCChHHHHHHHh
Q 006997 178 FGKVNEARSIFD 189 (622)
Q Consensus 178 ~g~~~~A~~~~~ 189 (622)
.|+.+-+..+++
T Consensus 87 ~~~~~~~~~Ll~ 98 (237)
T 3b7b_A 87 KGHYEVVQYLLS 98 (237)
T ss_dssp TTCHHHHHHHHT
T ss_pred cCCHHHHHHHHh
Confidence 344444333333
No 317
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.42 E-value=2.7e+02 Score=25.47 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=45.4
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhcCCCCchh--HHHHHHHhhcCCChhHHHHHhccCCCCCCCc-chHHHHHHHHHhC
Q 006997 35 LVLKACANINSIWDGKRVHSHVLKVGFQQDAFV--QTGLIDMYSKCSDFVSSRKVLDEMPVRLRSV-VSWNSIISAHSRA 111 (622)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~ 111 (622)
+.|...+..|+.+.+..+ ++.|..++... -...+...+..|..+-+.-+++.-. ..+. .-++ .+...+..
T Consensus 22 t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~g~t-~L~~A~~~ 94 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRL----IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGE--VHSLWHGQK-PIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC--CCCCBTTBC-HHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHH----HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC--CccccCCCC-HHHHHHHc
Confidence 344444566776544444 44565444321 1234455566777777777776644 2222 2222 33334566
Q ss_pred CCchHHHHHHHHHHHcCCC
Q 006997 112 CLNDEAILVLKEMWVLGLE 130 (622)
Q Consensus 112 ~~~~~A~~~~~~m~~~~~~ 130 (622)
|+.+-+..+++.....|..
T Consensus 95 g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHhccccCCC
Confidence 7766666666554443443
No 318
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.81 E-value=2.2e+02 Score=23.90 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=49.1
Q ss_pred hhhcCCchhHHHHHHHHHhCCCCCCccc--HHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchh--HHHHHHHhhcCCC
Q 006997 5 STNNGSFEETLSTYSSMLQTGVHGNSFT--FPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFV--QTGLIDMYSKCSD 80 (622)
Q Consensus 5 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 80 (622)
..+.|+.+-...+++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++... -...+...+..|+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 4567888877777877777776655432 123444445566664 5555566775544321 1233445566777
Q ss_pred hhHHHHHhccCC
Q 006997 81 FVSSRKVLDEMP 92 (622)
Q Consensus 81 ~~~A~~~~~~~~ 92 (622)
.+-+..+++...
T Consensus 92 ~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 92 PTCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC
Confidence 777777766644
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.41 E-value=1.4e+02 Score=23.32 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006997 199 WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLIL 239 (622)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 239 (622)
-..++..+...+..-.|.++++.+.+.+...+..|..-.|.
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~ 64 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLR 64 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 33444444444445555556655555544444444333333
No 320
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.42 E-value=1.7e+02 Score=22.21 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHH
Q 006997 270 NLLVSMYTKCGDLELARRVFDAVLEKS---VFLWTSMIGGYAQLGY--PSEAVNLFKRLLKTSVRPNEA 333 (622)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~ 333 (622)
..++.-|...|+.++|...++++..|. ......+..++-+.+. .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 456777888888888888888887652 2344445555555432 356778888887777554443
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.42 E-value=2.3e+02 Score=23.65 Aligned_cols=14 Identities=0% Similarity=-0.047 Sum_probs=6.3
Q ss_pred hcCCChhHHHHHhc
Q 006997 76 SKCSDFVSSRKVLD 89 (622)
Q Consensus 76 ~~~~~~~~A~~~~~ 89 (622)
++.|+.+....+++
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 34444444444443
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.41 E-value=1.9e+02 Score=24.87 Aligned_cols=16 Identities=0% Similarity=-0.139 Sum_probs=8.4
Q ss_pred HHhcCChHHHHHHHhh
Q 006997 175 YAKFGKVNEARSIFDE 190 (622)
Q Consensus 175 ~~~~g~~~~A~~~~~~ 190 (622)
.+..|+.+-+.-+++.
T Consensus 100 A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 100 AIERRCKHYVELLVEK 115 (260)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3445555555555554
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.39 E-value=70 Score=22.90 Aligned_cols=38 Identities=13% Similarity=0.053 Sum_probs=28.8
Q ss_pred CCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHH
Q 006997 280 GDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAV 317 (622)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 317 (622)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46778888888888888888888888887666655543
No 324
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.24 E-value=4.5e+02 Score=28.44 Aligned_cols=53 Identities=13% Similarity=-0.053 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006997 271 LLVSMYTKCGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEAVNLFKRLL 324 (622)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 324 (622)
.++..+...|..+-|.++...++. ++..--.+..+|...|++++|...|++.-
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 366777788888888776655554 54444567888999999999999998754
No 325
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.22 E-value=31 Score=25.86 Aligned_cols=72 Identities=1% Similarity=-0.110 Sum_probs=51.0
Q ss_pred chhhcCCchhHHHHHHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChhH
Q 006997 4 NSTNNGSFEETLSTYSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFVS 83 (622)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (622)
.|.++++|.+++++.. ....|.-.|...+.+++.+-|.++++...+.| +...+.+++-.|-..=+++-
T Consensus 15 ~ykkN~rw~qSI~L~K---------kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDv 82 (125)
T 3qil_A 15 VPRGSHMWKQSVELAK---------KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 82 (125)
T ss_dssp CSSSCCCCSSCCCCCS---------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTH
T ss_pred hhhccccHHHHHHHHH---------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHH
Confidence 3556677776655322 33457777888888899999999988888765 56667777777777777777
Q ss_pred HHHH
Q 006997 84 SRKV 87 (622)
Q Consensus 84 A~~~ 87 (622)
++++
T Consensus 83 VLEl 86 (125)
T 3qil_A 83 VLEL 86 (125)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7665
No 326
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=30.06 E-value=2.2e+02 Score=23.03 Aligned_cols=177 Identities=11% Similarity=0.086 Sum_probs=87.7
Q ss_pred HhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCC---------------C-C-HHHHHHH
Q 006997 378 SKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHGMGDQALNLFYKMQHVEGLK---------------P-D-AVVYTSI 440 (622)
Q Consensus 378 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------p-~-~~~~~~l 440 (622)
.-.|.+..+.-++.....-...-|.. -+|-+.+++..|+..++.+.+ -.+. | | ...++.+
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~-~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILE-GKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHT-TCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh-cccccCcccccccceeeeccchHHHHHHHH
Confidence 34577777776665543222222322 245677788888888888774 2232 2 2 2345666
Q ss_pred HHHHhccCchHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCH
Q 006997 441 LSACSHSGMVDDGLSFFKSMQSNFGIEPSIEHYLCLVDLLGRAG--RFDLALKTIHEMPVEVQAQVWAPLLSACMKHHNV 518 (622)
Q Consensus 441 l~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 518 (622)
...|.+.|+.++|+..+..-- |..|--.+...|+ .... ...+-..+..+-.......-++..........+
T Consensus 121 a~lltq~g~r~EaI~y~~~Sf---~~~~lf~~vEnli---yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~- 193 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRSF---GKSFLFSPVENLL---LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSP- 193 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH---HHCCCHHHHHHHH---HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCH-
T ss_pred HHHHHHhcCHHHhhhHhhhhc---CCccccchHHHHH---hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccH-
Confidence 777888888888888886544 3344322222222 1110 000000000000000000111111111111111
Q ss_pred HHHHHHHHHHHccCCCCCchHH-HHHHHHHhcCChHHHHHHHHHhhhCCCc
Q 006997 519 ELGEYAAKNLLTLNPGSTGNYI-LMANLFTSAGMWKEAATARGLMDDRRLT 568 (622)
Q Consensus 519 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 568 (622)
...++-.+--|+-.+.+. ..+..|...|..|+...+|..++++++.
T Consensus 194 ----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 194 ----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp ----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 455555566675433333 4466788889999988888888876654
No 327
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.83 E-value=2.4e+02 Score=25.88 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=25.6
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 006997 173 SMYAKFGKVNEARSIFDEIGETSIVSWTTIIGGYVNVGNVNEAFGLCNQMRRMS 226 (622)
Q Consensus 173 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 226 (622)
...+..|+.+-+..+++.-...+...-...+...+..|+.+-+..+++.....|
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccC
Confidence 334455666666666655443332111222333445566655555555433333
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.66 E-value=1.3e+02 Score=23.70 Aligned_cols=64 Identities=5% Similarity=0.072 Sum_probs=45.4
Q ss_pred HHHHHhCCCCCCcccHHHHHHHhhccC-ChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCChh
Q 006997 18 YSSMLQTGVHGNSFTFPLVLKACANIN-SIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDFV 82 (622)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (622)
.+.+.+.|+++++.- ..++..+...+ ..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 5 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345677888877654 34566666666 67889999999998876666666666777777777543
No 329
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.57 E-value=3.2e+02 Score=24.69 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCChhHHHHHhccCCCCCCCcchHHHHHHHHHhCCC--chHHHHHHHHHHHcCCCCChhhHHHHHhhhh-
Q 006997 68 QTGLIDMYSKCSDFVSSRKVLDEMPVRLRSVVSWNSIISAHSRACL--NDEAILVLKEMWVLGLELSASTFVSVVSGCS- 144 (622)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~- 144 (622)
...++.-|...|+.++|...++++............++......++ -+.+-.++..+. .++-+.......+...+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHh
Q ss_pred -----------hhhhHHHHHHHHHhCCCCCChhhHhHHHHHHHhcCC--hHHHHHHHhhcCCCCcc--------------
Q 006997 145 -----------FRQGISMHCCVYKLGLLNNEIPLANSVMSMYAKFGK--VNEARSIFDEIGETSIV-------------- 197 (622)
Q Consensus 145 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~-------------- 197 (622)
....-.+...++-.++-| ........-..-...|. +..|..++..=......
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~-~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILC-NTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSC-TTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCC-HHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred ----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCCh--HHHHHHHHHHHHhCCCCCchhHHH
Q 006997 198 ----SWTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILGCAQVGNL--FLALSMHSLLLKSGYNNEDPLDNL 271 (622)
Q Consensus 198 ----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 271 (622)
..+.++.-|...|+.++|.+.++++..-...+ ......+..+.-+.++. +...+++..+.+.|+-+.......
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_pred HHHHHHhcCCHH
Q 006997 272 LVSMYTKCGDLE 283 (622)
Q Consensus 272 l~~~~~~~~~~~ 283 (622)
+...+....+..
T Consensus 243 f~~vl~~l~Dl~ 254 (307)
T 2zu6_B 243 YERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhccHhh
No 330
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=29.49 E-value=51 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 537 GNYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
..+...++.+.+.|+|++|++..++..
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566777777888888877766554
No 331
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=29.07 E-value=91 Score=32.04 Aligned_cols=64 Identities=16% Similarity=0.068 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChH
Q 006997 487 DLALKTIHEMPVEVQAQVWAPLLSACMKHHNVELGEYAAKNLLTLNPGSTGNYILMANLFTSAGMWK 553 (622)
Q Consensus 487 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 553 (622)
+.|.++++-|. ...............|++..|.++.+.++..+|+|..+...++++|.+.|.-.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45566666664 22333344555667899999999999999999999999888999888776433
No 332
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=28.30 E-value=2.9e+02 Score=24.25 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=10.4
Q ss_pred HHHhhcCCChhHHHHHhcc
Q 006997 72 IDMYSKCSDFVSSRKVLDE 90 (622)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~ 90 (622)
+...+..|+.+-+..+++.
T Consensus 63 L~~Aa~~g~~~~v~~Ll~~ 81 (285)
T 3d9h_A 63 MHEAAIHGHQLSLRNLISQ 81 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHC
Confidence 3444556666665555554
No 333
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.27 E-value=1.2e+02 Score=23.36 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhccC-ChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCCh
Q 006997 19 SSMLQTGVHGNSFTFPLVLKACANIN-SIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDF 81 (622)
Q Consensus 19 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (622)
+.+.+.|.++++.- ..++..+...+ ..-.|.++++.+.+.+...+..|--.-++.+...|-+
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34667788876653 34566666666 6788999999999887566666666667777766643
No 334
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.16 E-value=2e+02 Score=21.87 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=45.0
Q ss_pred hHHHHHHHhcCChHHHHHHHhhcCCCCc---chHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCCCHhH
Q 006997 169 NSVMSMYAKFGKVNEARSIFDEIGETSI---VSWTTIIGGYVNVGN--VNEAFGLCNQMRRMSVTPDLVV 233 (622)
Q Consensus 169 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 233 (622)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 6788889999999999999999976632 234445555555432 4567788888887775544433
No 335
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.87 E-value=1.4e+02 Score=23.76 Aligned_cols=38 Identities=3% Similarity=0.058 Sum_probs=18.6
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCHhHH
Q 006997 197 VSWTTIIGGYVNVGNVNEAFGLCNQMRRM--SVTPDLVVF 234 (622)
Q Consensus 197 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~ 234 (622)
..-..++..+...++.-.|.++++.+.+. +...+..|.
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTV 72 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATV 72 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHH
Confidence 33444455555555555555555555544 333444443
No 336
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.30 E-value=1.4e+02 Score=23.87 Aligned_cols=70 Identities=7% Similarity=0.137 Sum_probs=48.8
Q ss_pred chhHHHHHHH-HHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHh--cCCCCchhHHHHHHHhhcCCCh
Q 006997 11 FEETLSTYSS-MLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKV--GFQQDAFVQTGLIDMYSKCSDF 81 (622)
Q Consensus 11 ~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 81 (622)
.+.+++-+.+ +.+.|.++.+. =..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544 55678887664 355677777777888999999999887 6566666666667777777744
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.19 E-value=1.7e+02 Score=22.89 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 006997 199 WTTIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVFLNLILG 240 (622)
Q Consensus 199 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 240 (622)
-..++..+...+..-.|.++++.+.+.+...+..|..-.|..
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 70 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNF 70 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHH
Confidence 344455555555555566666666555444444443333333
No 338
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.64 E-value=2e+02 Score=22.37 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=25.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006997 323 LLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGR 382 (622)
Q Consensus 323 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (622)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+...-++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3344544444332 2222232333344455555555554444444444444444544443
No 339
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=24.70 E-value=1.8e+02 Score=20.35 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhcCChHHH
Q 006997 279 CGDLELARRVFDAVLEKSVFLWTSMIGGYAQLGYPSEA 316 (622)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 316 (622)
....++|..+++.+..++..+|..++.++...+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 46678888888888888888888888888777654433
No 340
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.49 E-value=1e+02 Score=24.10 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHhCCCCCCcccHHHHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCCCh
Q 006997 18 YSSMLQTGVHGNSFTFPLVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCSDF 81 (622)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (622)
-+.+.+.|+++.+.- ..++..+...+ .-.|.++++.+.+.+...+..|--..++.+...|-+
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345667788877653 34455555555 678999999998887566666655667777776643
No 341
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.29 E-value=1.9e+02 Score=24.76 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=11.8
Q ss_pred HHHHHhcCChHHHHHHHh
Q 006997 172 MSMYAKFGKVNEARSIFD 189 (622)
Q Consensus 172 ~~~~~~~g~~~~A~~~~~ 189 (622)
+...+..|+.+-+.-+++
T Consensus 140 L~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 444556677777777776
No 342
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.85 E-value=2.5e+02 Score=21.50 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=7.6
Q ss_pred hcCCChhHHHHHhcc
Q 006997 76 SKCSDFVSSRKVLDE 90 (622)
Q Consensus 76 ~~~~~~~~A~~~~~~ 90 (622)
+..|+.+-+..+++.
T Consensus 43 ~~~~~~~~v~~Ll~~ 57 (156)
T 1bd8_A 43 MMFGSTAIALELLKQ 57 (156)
T ss_dssp SCTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 455555555555443
No 343
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.47 E-value=2.7e+02 Score=26.28 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=37.6
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHhhhCCCccCCCceEEEECCeEEEEEecCCCC-cchHHHHHHHHHHHHH
Q 006997 535 STGNYILMANLFTSAGMWKEAATARGLMDDRRLTKEPGWSQVEIDGSVQVFVAGDRSH-HLSVDIRKTLKELHIK 608 (622)
Q Consensus 535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 608 (622)
+.-.|..++..+.+.+++.+|...+-..-.- .+...+ -+..|+|.++.++..+
T Consensus 317 HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V---------------------i~~YNY~reDeEIYKEf~eIAne 370 (550)
T 3u84_A 317 HIYPYMYLAGYHCRNRNVREALQAWADTATV---------------------IQDYNYCREDEEIYKEFFEVAND 370 (550)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HTTSCCCGGGHHHHHHHHHHHHT
T ss_pred CccceeecchhhhhcchHHHHHHHHHHHHHH---------------------HHHcCCCcchHHHHHHHHHHHHH
Confidence 5566889999999999999999999876541 111122 3667888877765544
No 344
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.45 E-value=4.3e+02 Score=24.18 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCCH---HHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCC
Q 006997 270 NLLVSMYTKCGDLELARRVFDAVLEKSV---FLWTSMIGGYAQLG-YPSEAVNLFKRLLKTSVR 329 (622)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~ 329 (622)
..++.-|...|+.++|...++++..|.- .....+..++-+.. ..+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4466667777888888888887765531 22222222222211 234455666666655543
No 345
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.12 E-value=1.1e+02 Score=24.57 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=28.4
Q ss_pred hcCCchhHHHHHHHHHhCCCCC--CcccHHHHHH-Hh-----hccCChhhHHHHHHHHHH
Q 006997 7 NNGSFEETLSTYSSMLQTGVHG--NSFTFPLVLK-AC-----ANINSIWDGKRVHSHVLK 58 (622)
Q Consensus 7 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~-~~-----~~~~~~~~a~~~~~~~~~ 58 (622)
..|++-+|-++|+........+ ....|..||+ .. .+.|+...|..++.....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466667777776666543333 3334555555 21 235666666666666543
No 346
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.88 E-value=2.9e+02 Score=25.46 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHHcc-----CCCCCchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 006997 521 GEYAAKNLLTL-----NPGSTGNYILMANLFTSAGMWKEAATARGLMDD 564 (622)
Q Consensus 521 a~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 564 (622)
++.+|.+++.. ...+.-.|..++..+.+.+++.+|.+.+-....
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 44555555442 223556688899999999999999999987654
No 347
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.79 E-value=2.7e+02 Score=21.69 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=24.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 006997 323 LLKTSVRPNEATLATTLSACAELGSLSKGKEIEEYIVLNGLESNRQVQTSLIHMFSKCGR 382 (622)
Q Consensus 323 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (622)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+.-.-++.+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3344444433322 2233333333444555555555555444444444444445554443
No 348
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.64 E-value=3.8e+02 Score=23.27 Aligned_cols=83 Identities=11% Similarity=0.025 Sum_probs=41.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 006997 364 ESNRQVQTSLIHMFSKCGRINKAKEVFERVPDKDLAVWSAMINGYAIHG-MGDQALNLFYKMQHVEGLKPDAVVYTSILS 442 (622)
Q Consensus 364 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~p~~~~~~~ll~ 442 (622)
.++..+-...+.++.+.|..+....+...+..++...-...+.++...+ ....+...+..+.+ .++...-...+.
T Consensus 139 d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~----d~~~~vR~~A~~ 214 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ----DKNEEVRIEAII 214 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT----CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc----CCCHHHHHHHHH
Confidence 4566666666666776665433333334444555555444555555544 23344444444432 355555555666
Q ss_pred HHhccCch
Q 006997 443 ACSHSGMV 450 (622)
Q Consensus 443 ~~~~~g~~ 450 (622)
++.+.|+.
T Consensus 215 aL~~~~~~ 222 (280)
T 1oyz_A 215 GLSYRKDK 222 (280)
T ss_dssp HHHHTTCG
T ss_pred HHHHhCCH
Confidence 66666643
No 349
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.46 E-value=3.3e+02 Score=22.55 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=32.5
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 006997 303 MIGGY---AQLGYPSEAVNLFKRLLKTSVRPNEATLATTLSACAELGS 347 (622)
Q Consensus 303 l~~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 347 (622)
+|+++ .+..+++.|+-.+-+|++.|-.|....=..++.+....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 44544 3568999999999999999877766666666666655543
No 350
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.84 E-value=3.7e+02 Score=22.83 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 006997 213 NEAFGLCNQMRRMSVTPD-LVVFLNLILGCAQVGNLFLALSMHSLLLKSGYNN 264 (622)
Q Consensus 213 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (622)
+.+.++|..|...||--. ...|......+...|++.+|..+|..-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 577788888888876554 3456666667777788888888888877776555
No 351
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.46 E-value=2.7e+02 Score=21.18 Aligned_cols=41 Identities=7% Similarity=0.005 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006997 199 WTTIIGGYVNVG-NVNEAFGLCNQMRRMSVTPDLVVFLNLIL 239 (622)
Q Consensus 199 ~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 239 (622)
-..++..+...+ ..-.|.++++.+.+.+...+..|...-|.
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~ 61 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLT 61 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 334455555444 45566666666665554444444433333
No 352
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.44 E-value=3e+02 Score=26.96 Aligned_cols=76 Identities=12% Similarity=-0.003 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCcHHhHHHHHHHH
Q 006997 436 VYTSILSACSHSGMVDDGLSFFKSMQSNFGIEP-SIEHYLCLVDLLGRAGRFDLALKTIHEMP--VEVQAQVWAPLLSAC 512 (622)
Q Consensus 436 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 512 (622)
+...+.+.......++.|..+|.++... .| +...|+.|.-.....|+.-+|.-.+-+.. ..|-+.+..+|...+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~---~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 3444555555667789999999999854 56 56788888888888888888888776654 577788888887766
Q ss_pred Hh
Q 006997 513 MK 514 (622)
Q Consensus 513 ~~ 514 (622)
.+
T Consensus 231 ~~ 232 (497)
T 1ya0_A 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.56 E-value=1.3e+02 Score=23.19 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhcCCCCchhHHHHHHHhhcCC
Q 006997 35 LVLKACANINSIWDGKRVHSHVLKVGFQQDAFVQTGLIDMYSKCS 79 (622)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (622)
.++..+...+..-.|.++++.+.+.+...+..|--..++.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
No 354
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.49 E-value=2e+02 Score=22.29 Aligned_cols=33 Identities=3% Similarity=0.079 Sum_probs=15.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHhHH
Q 006997 201 TIIGGYVNVGNVNEAFGLCNQMRRMSVTPDLVVF 234 (622)
Q Consensus 201 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 234 (622)
.++..+...+ .-.|.++++.+.+.+...+..|.
T Consensus 23 ~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TV 55 (145)
T 3eyy_A 23 LVLEAVDTLE-HATPDDILGEVRKTASGINISTV 55 (145)
T ss_dssp HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHH
Confidence 3444444444 44555555555555444444443
No 355
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=20.05 E-value=5.5e+02 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 006997 538 NYILMANLFTSAGMWKEAATARGLMD 563 (622)
Q Consensus 538 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 563 (622)
.+..+++++..+|+.+.|.++++.+.
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~lp 363 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSLP 363 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 45677889999999999999999764
Done!