Query 006998
Match_columns 622
No_of_seqs 58 out of 60
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 14:30:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s0r_A De novo designed helica 17.5 1.1E+02 0.0036 21.9 3.0 19 123-141 11-29 (30)
2 1se7_A HOT, homologue of the t 14.4 1E+02 0.0035 26.4 2.7 22 109-134 6-27 (83)
3 1qr0_A 4'-phosphopantetheinyl 10.5 3.4E+02 0.012 25.2 5.3 37 106-142 17-57 (228)
4 2pth_A Peptidyl-tRNA hydrolase 10.4 1.6E+02 0.0054 28.1 3.0 28 103-133 145-172 (193)
5 2jo4_A KIA7; peptide, oligomer 10.3 1.6E+02 0.0053 20.5 2.1 15 128-142 4-18 (26)
6 3nea_A PTH, peptidyl-tRNA hydr 10.3 1.3E+02 0.0046 29.1 2.5 28 110-142 171-198 (207)
7 2jo5_A KIA7F; peptide, oligome 10.2 1.6E+02 0.0054 20.5 2.1 15 128-142 4-18 (26)
8 3v2i_A PTH, peptidyl-tRNA hydr 10.2 1.6E+02 0.0054 28.9 3.0 23 110-134 181-203 (222)
9 2z2i_A PTH, peptidyl-tRNA hydr 10.1 1.6E+02 0.0053 28.1 2.9 33 103-141 146-178 (191)
10 1ryb_A CRS2; alpha-beta, hydro 9.5 1.8E+02 0.0062 28.1 3.0 29 109-142 164-192 (205)
No 1
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=17.54 E-value=1.1e+02 Score=21.94 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 006998 123 LQVIDRAAAAIAAARAILE 141 (622)
Q Consensus 123 ~qvidraaaaiaaara~l~ 141 (622)
.|.+..|--||.|||..|+
T Consensus 11 qqalekaqlalqaarqalk 29 (30)
T 3s0r_A 11 QQALEKAQLALQAARQALK 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4788899999999999886
No 2
>1se7_A HOT, homologue of the theta subunit of DNA polymerase III; E. coli bacteriophage P1, homologue of theta, E. coli DNA polymerase III; NMR {Enterobacteria phage P1} SCOP: a.237.1.1 PDB: 2ido_B*
Probab=14.44 E-value=1e+02 Score=26.42 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=18.0
Q ss_pred hhcCChHHHhhhhHHHHHHHHHHHHH
Q 006998 109 ILDVSKEERDRIQRLQVIDRAAAAIA 134 (622)
Q Consensus 109 ~l~v~~eerdrvqr~qvidraaaaia 134 (622)
|-.+|+||||+|. +|-+|+.+|
T Consensus 6 La~l~~ee~~Kin----vD~~AS~va 27 (83)
T 1se7_A 6 IAAKSQEERDKVN----VDLAASGVA 27 (83)
T ss_dssp TTCCSHHHHHHHH----HHHHHHHHH
T ss_pred HhhCCHHHHHHHH----HHHHHHHHH
Confidence 4468999999986 788888776
No 3
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1 d.150.1.1
Probab=10.52 E-value=3.4e+02 Score=25.22 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=20.6
Q ss_pred HHHhhc-CChHHHhhhhHHH-HHHHH--HHHHHHHHHHHhh
Q 006998 106 FSKILD-VSKEERDRIQRLQ-VIDRA--AAAIAAARAILEE 142 (622)
Q Consensus 106 f~~~l~-v~~eerdrvqr~q-vidra--aaaiaaara~l~~ 142 (622)
|+.+++ ++++||.|++|+. .-||+ .|+-.+||.+|..
T Consensus 17 ~~~~~~~Ls~~E~~~~~~~~~~~~r~~~la~R~~~r~al~~ 57 (228)
T 1qr0_A 17 NERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISR 57 (228)
T ss_dssp HHHHHTTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 444443 4899999999863 23332 3444445544443
No 4
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=10.42 E-value=1.6e+02 Score=28.12 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=21.0
Q ss_pred HHHHHHhhcCChHHHhhhhHHHHHHHHHHHH
Q 006998 103 SEEFSKILDVSKEERDRIQRLQVIDRAAAAI 133 (622)
Q Consensus 103 ~~~f~~~l~v~~eerdrvqr~qvidraaaai 133 (622)
..+|- |=.++++|+..|. ++|++|+.||
T Consensus 145 v~~yV-L~~f~~~E~~~l~--~~i~~a~~a~ 172 (193)
T 2pth_A 145 VVGFV-LGKPPVSEQKLID--EAIDEAARCT 172 (193)
T ss_dssp HHHHH-TSCCCHHHHHHHH--HHHHHHHHHH
T ss_pred hhHHh-hCCCCHHHHHHHH--HHHHHHHHHH
Confidence 34442 4578999999997 6799988775
No 5
>2jo4_A KIA7; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=10.27 E-value=1.6e+02 Score=20.54 Aligned_cols=15 Identities=53% Similarity=0.534 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhh
Q 006998 128 RAAAAIAAARAILEE 142 (622)
Q Consensus 128 raaaaiaaara~l~~ 142 (622)
-|||||-|--||++.
T Consensus 4 aaaaaikaiaaiika 18 (26)
T 2jo4_A 4 AAAAAIKAIAAIIKA 18 (26)
T ss_pred HHHHHHHHHHHHHHc
Confidence 477888888888874
No 6
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=10.26 E-value=1.3e+02 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=21.2
Q ss_pred hcCChHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006998 110 LDVSKEERDRIQRLQVIDRAAAAIAAARAILEE 142 (622)
Q Consensus 110 l~v~~eerdrvqr~qvidraaaaiaaara~l~~ 142 (622)
=.++++|++.|. ++|++|+.|| ..+|+.
T Consensus 171 ~~fs~~E~~~l~--~~i~~a~~a~---~~~~~~ 198 (207)
T 3nea_A 171 SNPSIAQKKDID--SAIDNGICFL---DDIINY 198 (207)
T ss_dssp SCCCHHHHHHHH--HHHHHHHHTH---HHHHTT
T ss_pred cCCCHHHHHHHH--HHHHHHHHHH---HHHHHC
Confidence 378999999997 5899988765 455543
No 7
>2jo5_A KIA7F; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=10.21 E-value=1.6e+02 Score=20.53 Aligned_cols=15 Identities=53% Similarity=0.534 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhh
Q 006998 128 RAAAAIAAARAILEE 142 (622)
Q Consensus 128 raaaaiaaara~l~~ 142 (622)
-|||||-|--||++.
T Consensus 4 aaaaaikaiaaiika 18 (26)
T 2jo5_A 4 AAAAAIKAIAAIIKA 18 (26)
T ss_pred HHHHHHHHHHHHHHc
Confidence 477888888888874
No 8
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=10.15 E-value=1.6e+02 Score=28.85 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=18.8
Q ss_pred hcCChHHHhhhhHHHHHHHHHHHHH
Q 006998 110 LDVSKEERDRIQRLQVIDRAAAAIA 134 (622)
Q Consensus 110 l~v~~eerdrvqr~qvidraaaaia 134 (622)
=.++++|++.|. ++|++|+.||.
T Consensus 181 ~~fs~~E~~~l~--~~i~~a~~av~ 203 (222)
T 3v2i_A 181 KPPRKEEQDVID--AAIERALAVMP 203 (222)
T ss_dssp SCCCHHHHHHHH--HHHHHHHHHHH
T ss_pred cCCCHHHHHHHH--HHHHHHHHHHH
Confidence 378999999997 58999887663
No 9
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=10.14 E-value=1.6e+02 Score=28.13 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=23.5
Q ss_pred HHHHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 006998 103 SEEFSKILDVSKEERDRIQRLQVIDRAAAAIAAARAILE 141 (622)
Q Consensus 103 ~~~f~~~l~v~~eerdrvqr~qvidraaaaiaaara~l~ 141 (622)
..+|- |=.+|++|+..|. ++|++|+.|| ..+|+
T Consensus 146 v~~yV-L~~f~~~E~~~l~--~~i~~a~~a~---~~~~~ 178 (191)
T 2z2i_A 146 PAAFV-LENFTPAERAEVP--TICEQAADAT---ELLIE 178 (191)
T ss_dssp HHHHH-TSBCCHHHHTTHH--HHHHHHHHHH---HHHHH
T ss_pred hhhHh-cCCCCHHHHHHHH--HHHHHHHHHH---HHHHH
Confidence 34443 5578999999998 5799988765 44554
No 10
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=9.46 E-value=1.8e+02 Score=28.12 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=21.6
Q ss_pred hhcCChHHHhhhhHHHHHHHHHHHHHHHHHHHhh
Q 006998 109 ILDVSKEERDRIQRLQVIDRAAAAIAAARAILEE 142 (622)
Q Consensus 109 ~l~v~~eerdrvqr~qvidraaaaiaaara~l~~ 142 (622)
|=.++++||..|. ++|++|+.|| +.+|+.
T Consensus 164 L~~f~~~E~~~l~--~~i~~a~~a~---~~~~~~ 192 (205)
T 1ryb_A 164 LQKFSSEERVQID--TALEQGVDAV---RTLVLK 192 (205)
T ss_dssp TSBCCHHHHHHHH--HHHHHHHHHH---HHHHHH
T ss_pred cCCCCHHHHHHHH--HHHHHHHHHH---HHHHHC
Confidence 4568999999997 6799888765 455543
Done!