Query 006998
Match_columns 622
No_of_seqs 58 out of 60
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 14:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006998.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006998hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qr0a1 d.150.1.1 (A:1-101) 4' 39.0 27 0.0019 27.2 5.8 40 104-143 15-58 (101)
2 d1bdga2 c.55.1.3 (A:223-460) H 25.5 36 0.0026 30.6 5.0 47 98-144 128-180 (237)
3 d2idob1 a.237.1.1 (B:2-76) Hom 22.2 29 0.0021 27.5 3.1 22 109-134 5-26 (75)
4 d3besl1 a.26.1.3 (L:0-126) Int 20.4 53 0.0039 28.1 4.7 74 49-123 25-109 (127)
5 d2ae9a1 a.237.1.1 (A:1-76) The 18.6 28 0.002 27.7 2.3 22 109-134 5-26 (76)
6 d2cchb2 a.74.1.1 (B:309-432) C 12.6 49 0.0035 26.7 2.3 16 129-144 48-63 (124)
7 d2f9wa2 c.55.1.13 (A:1-114) Ty 11.6 50 0.0037 25.1 2.0 12 126-137 100-111 (114)
8 d2gc6a2 c.72.2.2 (A:1-296) Fol 11.4 58 0.0042 28.9 2.7 18 126-143 262-279 (296)
9 d1y9ba1 a.43.1.9 (A:3-83) Hypo 10.4 1.1E+02 0.0078 23.5 3.6 35 110-144 8-50 (81)
10 d1zbdb_ g.50.1.1 (B:) Effector 8.9 1.3E+02 0.0092 24.1 3.7 28 112-141 3-30 (124)
No 1
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=39.01 E-value=27 Score=27.22 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=25.8
Q ss_pred HHHHHhhc-CChHHHhhhhHH-HHHHHHH--HHHHHHHHHHhhc
Q 006998 104 EEFSKILD-VSKEERDRIQRL-QVIDRAA--AAIAAARAILEEK 143 (622)
Q Consensus 104 ~~f~~~l~-v~~eerdrvqr~-qvidraa--aaiaaara~l~~~ 143 (622)
.+++++|. +|++||.|++|+ ..-||.. ++-+..|.+|...
T Consensus 15 ~~~~~~~~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr~~l~~~ 58 (101)
T d1qr0a1 15 EENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQ 58 (101)
T ss_dssp HHHHHHHTTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665 899999999994 4555443 3444556666544
No 2
>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}
Probab=25.47 E-value=36 Score=30.55 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHhhc---CChHHHhhhhHH--HHHHHHHHHHHHHHH-HHhhcC
Q 006998 98 QLEKKSEEFSKILD---VSKEERDRIQRL--QVIDRAAAAIAAARA-ILEEKN 144 (622)
Q Consensus 98 ~~~~k~~~f~~~l~---v~~eerdrvqr~--qvidraaaaiaaara-~l~~~~ 144 (622)
++.....-|++.|. ++.+++.-||++ -|+.|||.=+||+-| ||+...
T Consensus 128 ~~~~~~~~l~~~~~~~~~~~~d~~~lr~i~~~V~~RaA~L~Aa~iaai~~~~~ 180 (237)
T d1bdga2 128 LLYNTHYMLTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACILRRIN 180 (237)
T ss_dssp CCHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34445556666665 467889889888 789999866555543 454443
No 3
>d2idob1 a.237.1.1 (B:2-76) Homolog of theta (HOT) {Bacteriophage P1 [TaxId: 10678]}
Probab=22.23 E-value=29 Score=27.55 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=18.9
Q ss_pred hhcCChHHHhhhhHHHHHHHHHHHHH
Q 006998 109 ILDVSKEERDRIQRLQVIDRAAAAIA 134 (622)
Q Consensus 109 ~l~v~~eerdrvqr~qvidraaaaia 134 (622)
|-.+|+||+|.|- ||-||+++|
T Consensus 5 la~l~kee~dKvn----VDLaAsgVa 26 (75)
T d2idob1 5 IAAKSQEERDKVN----VDLAASGVA 26 (75)
T ss_dssp GGGSCHHHHHHHH----HHHHHHHHH
T ss_pred HhhcCHHHHHHHh----HHHHHhHhH
Confidence 5678999999985 899988887
No 4
>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.43 E-value=53 Score=28.05 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=40.9
Q ss_pred CCCCchHHHHHHHHhh-hhhhHHHHHHhhcccccCCCCCCCCCCCC--CchHHH--------HHhHHHHHHhhcCChHHH
Q 006998 49 EGGGSYLDMWQKAVDR-DRKEIEFQKIAGSLAESGDVDGNEGGGGR--DLTEQL--------EKKSEEFSKILDVSKEER 117 (622)
Q Consensus 49 ~g~~syldmwk~av~r-er~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------~~k~~~f~~~l~v~~eer 117 (622)
+||+=+|++||+.-++ |+|-+.=|=|---|.--.|..++..---+ .-.++| .+|-.+|++|..++.-..
T Consensus 25 dggplFl~iLknw~EesekkIi~SQIVs~Y~klFen~k~nq~iq~si~~Ike~l~~~f~~~~~~K~~df~~L~ki~vnD~ 104 (127)
T d3besl1 25 DNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDL 104 (127)
T ss_dssp CSSCSSHHHHHHCCSHHHHHHHHHHHHHHHHHHHHTTTTCSTTHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHCCTTCH
T ss_pred cCCccHHHHHHhHHhhcccchHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhccCCCH
Confidence 8899999999999988 66655443111111111122333200000 001233 467889999988876543
Q ss_pred hhhhHH
Q 006998 118 DRIQRL 123 (622)
Q Consensus 118 drvqr~ 123 (622)
+|||-
T Consensus 105 -~VQrK 109 (127)
T d3besl1 105 -NVQRK 109 (127)
T ss_dssp -HHHHH
T ss_pred -HHHHH
Confidence 67774
No 5
>d2ae9a1 a.237.1.1 (A:1-76) Theta subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=18.62 E-value=28 Score=27.71 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=18.9
Q ss_pred hhcCChHHHhhhhHHHHHHHHHHHHH
Q 006998 109 ILDVSKEERDRIQRLQVIDRAAAAIA 134 (622)
Q Consensus 109 ~l~v~~eerdrvqr~qvidraaaaia 134 (622)
|-.+|+||+|.|. ||-||+++|
T Consensus 5 la~l~kee~dKvn----VDLaAsgVa 26 (76)
T d2ae9a1 5 LAKLDQTEMDKVN----VDLAAAGVA 26 (76)
T ss_dssp CCCSSTHHHHHHH----HHHHHHHHH
T ss_pred hhhcCHHHHHHHh----HHHHHhHhH
Confidence 5678999999985 899998887
No 6
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.60 E-value=49 Score=26.66 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhcC
Q 006998 129 AAAAIAAARAILEEKN 144 (622)
Q Consensus 129 aaaaiaaara~l~~~~ 144 (622)
|||||..||-+|...+
T Consensus 48 Aaaai~lar~~l~~~~ 63 (124)
T d2cchb2 48 AGAAFHLALYTVTGQS 63 (124)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999998654
No 7
>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.57 E-value=50 Score=25.13 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH
Q 006998 126 IDRAAAAIAAAR 137 (622)
Q Consensus 126 idraaaaiaaar 137 (622)
+||-+|||||-+
T Consensus 100 ~DR~~~~vaA~~ 111 (114)
T d2f9wa2 100 LDRWLALVAAHH 111 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799998887754
No 8
>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}
Probab=11.39 E-value=58 Score=28.88 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 006998 126 IDRAAAAIAAARAILEEK 143 (622)
Q Consensus 126 idraaaaiaaara~l~~~ 143 (622)
|.-|++|||+|++|++..
T Consensus 262 ~~Na~~Aia~~~~l~~~~ 279 (296)
T d2gc6a2 262 QRNMAIAIQTAKVYAKQT 279 (296)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 578999999999998764
No 9
>d1y9ba1 a.43.1.9 (A:3-83) Hypothetical protein VCA0482 (VCA0319) {Vibrio cholerae [TaxId: 666]}
Probab=10.43 E-value=1.1e+02 Score=23.47 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=23.6
Q ss_pred hcCChHHHhhhhHHHHH-H-H------HHHHHHHHHHHHhhcC
Q 006998 110 LDVSKEERDRIQRLQVI-D-R------AAAAIAAARAILEEKN 144 (622)
Q Consensus 110 l~v~~eerdrvqr~qvi-d-r------aaaaiaaara~l~~~~ 144 (622)
|+|+.|.++.|+|--=+ . + ..+|+.+|+.+|.+..
T Consensus 8 ~Rv~~e~k~li~rAA~l~G~~tls~Fv~~aa~~~A~~vi~~~~ 50 (81)
T d1y9ba1 8 ARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQVIEREQ 50 (81)
T ss_dssp EECCHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhH
Confidence 68899999877764322 2 1 3567778888887653
No 10
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.87 E-value=1.3e+02 Score=24.08 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=18.8
Q ss_pred CChHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 006998 112 VSKEERDRIQRLQVIDRAAAAIAAARAILE 141 (622)
Q Consensus 112 v~~eerdrvqr~qvidraaaaiaaara~l~ 141 (622)
++.|||+.| ++||.|+...-+.=+-.|.
T Consensus 3 LT~eE~~~i--~~VL~r~~~l~~~E~~rl~ 30 (124)
T d1zbdb_ 3 LTDEEKEII--NRVIARAEKMETMEQERIG 30 (124)
T ss_dssp CCSSHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 578888888 6888888655444444443
Done!