Query 006999
Match_columns 622
No_of_seqs 202 out of 657
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 2E-186 5E-191 1561.3 53.4 616 4-622 297-918 (918)
2 PLN02264 lipoxygenase 100.0 7E-184 2E-188 1541.3 50.9 614 4-622 301-919 (919)
3 PLN02337 lipoxygenase 100.0 5E-181 1E-185 1523.7 52.6 614 4-622 240-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 8E-168 2E-172 1416.3 30.7 595 4-606 70-667 (667)
5 PF10474 DUF2451: Protein of u 35.3 25 0.00053 36.2 2.1 24 404-433 178-201 (234)
6 PF12588 PSDC: Phophatidylseri 31.2 86 0.0019 29.9 4.9 48 420-468 11-59 (141)
7 PF09545 RE_AccI: AccI restric 25.6 5.3E+02 0.011 27.8 9.8 71 398-468 51-136 (366)
8 PF10281 Ish1: Putative stress 24.5 1.2E+02 0.0027 22.0 3.7 30 423-462 5-35 (38)
9 KOG2675 Adenylate cyclase-asso 21.5 2.8E+02 0.0062 31.3 7.2 110 289-445 91-217 (480)
10 PF05017 TMP: TMP repeat; Int 16.7 45 0.00097 18.1 -0.0 10 400-409 1-10 (11)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=2.3e-186 Score=1561.32 Aligned_cols=616 Identities=54% Similarity=0.981 Sum_probs=588.0
Q ss_pred ccccCCCCCCCCC---CCccCCCCCcChhhhhhhhhhHHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHHhcCCCCCCc
Q 006999 4 LMHADQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPL 80 (622)
Q Consensus 4 ~~~~~~~~e~~~~---~~ylP~de~f~~~k~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ly~~~~~~~~~ 80 (622)
-++|||++|||.. .+||||||+|++.|.++|.+.++|+++|.++|.++++++.+..+|+||+||++||++|.++|..
T Consensus 297 ~t~~Dp~~Esr~~~~~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~ 376 (918)
T PLN02305 297 PTKKDPLCESRIEKPHPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTE 376 (918)
T ss_pred CCCCCCcccccccCCCCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCch
Confidence 3689999999954 4799999999999999999999999999999999999887789999999999999999999874
Q ss_pred cccchhhhhhH-HHHHHhhhcCccccccCCcccccccccCccccHHHHHHHhhCCCcccccccccCCCCCCCCCCcCCCC
Q 006999 81 KQEGFWNTLLP-RLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP 159 (622)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~P~~~~~~~~~W~~D~~Fg~Q~LaG~NP~~I~r~~~~P~~~~l~~~~~g~~ 159 (622)
....+++.++| .+.+.++++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++++|||++||++
T Consensus 377 ~~~~~~~~p~~~~~~~~i~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~ 456 (918)
T PLN02305 377 EPKDIGLNPFLGNFMKQVLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPP 456 (918)
T ss_pred hhhhhhcCCchHHHHHHhhhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCc
Confidence 21223333343 45555588899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhhccCCCccccccceEEeeCCCCceeeEEEEecCCCCC
Q 006999 160 ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMN 239 (622)
Q Consensus 160 ~~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lf~l~~~g~L~PiAIqL~~~~~~ 239 (622)
+|+||++||+..|+| +||++||++|||||+||||++|||+.++|..+++++|||+||||++++|+|+||||||++++++
T Consensus 457 ~s~iT~e~ve~~L~G-~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~ 535 (918)
T PLN02305 457 ESALTEELIERELEG-MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTP 535 (918)
T ss_pred CCCcCHHHHHhhcCC-CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCC
Confidence 999999999999998 9999999999999999999999999899999999999999999999999999999999999877
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhhccc
Q 006999 240 GKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEI 319 (622)
Q Consensus 240 ~~~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~I 319 (622)
+++..++||||.++++++|.|+||||||++||+++||+++||++||+++|||||||+||||.+|||||||.||||+||+|
T Consensus 536 ~~p~~~~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~I 615 (918)
T PLN02305 536 SSPGNKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEI 615 (918)
T ss_pred CCCCcceeeCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHH
Confidence 66666789999876678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccCCCccccccCCCChhHHHHHHHHhcccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHH
Q 006999 320 NGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDL 399 (622)
Q Consensus 320 N~~Ar~~Li~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~d~~~~~g~~~~lp~YpYrdDgl~i 399 (622)
|++||++||++||++|++|++|+++++|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||||||+|
T Consensus 616 NalAR~~LIn~gGiie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~I 695 (918)
T PLN02305 616 NALARQSLINGGGIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLLI 695 (918)
T ss_pred HHHHHHhccCCCCceeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhHhhhccccccccccccc
Q 006999 400 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQ 479 (622)
Q Consensus 400 W~aI~~fV~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p~~~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ 479 (622)
|+||++||++||++||++|++|++|.|||+||+||+++||+|+++.+|||+|+|+++||++||+|||+||+|||||||||
T Consensus 696 W~AIk~wV~~yV~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFgQ 775 (918)
T PLN02305 696 WSAIKEWVESYVDHFYSEPNSITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFGQ 775 (918)
T ss_pred HHHHHHHHHHHHHhhCCChhhhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccccccCCCCCCCCCchHHHHhhhchHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCCCCC--CCC
Q 006999 480 YTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEP--AWR 557 (622)
Q Consensus 480 ~~~~gf~PN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~--~~~ 557 (622)
|+|+||+||+|++||+|||++ ++.++++|+.+||+++|++||++.||+.+|+++++||+|++||+|||++.+. .|+
T Consensus 776 ydy~gfvPN~P~~~Rrp~P~~--~~~~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w~ 853 (918)
T PLN02305 776 YPFGGYVPNRPTLMRKLIPQE--NDPDYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHWI 853 (918)
T ss_pred cccccccCCCchhhcCCCCCC--CCchHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCcccccc
Confidence 999999999999999999987 6778999999999999999999999999999999999999999999999875 699
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCcCCcceecCCCCCCCCcCCCCccccC
Q 006999 558 EDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI 622 (622)
Q Consensus 558 ~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~pY~~L~Ps~~~g~t~~~IpnSisI 622 (622)
.|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 854 ~D~~~~~A~~rF~~~L~eIE~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s~~G~T~rgIPNSISI 918 (918)
T PLN02305 854 NDHEVVKLFNKFSARLEEIEKTINERNKDIRLKNRNGAGIPPYELLLPTSGPGVTGRGIPNSISI 918 (918)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCCCCCCCCcCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=7.1e-184 Score=1541.29 Aligned_cols=614 Identities=52% Similarity=0.956 Sum_probs=585.3
Q ss_pred ccccCCCCCCCCC---CCccCCCCCcChhhhhhhhhhHHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHHhcCCCCCCc
Q 006999 4 LMHADQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPL 80 (622)
Q Consensus 4 ~~~~~~~~e~~~~---~~ylP~de~f~~~k~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ly~~~~~~~~~ 80 (622)
-++|||++|||.. .+||||||+|++.|.++|.+.++|+++|.++|.++++++.+ +|+||+||++||++|.++|..
T Consensus 301 ~t~~dp~~Esr~~~~~~iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~ 378 (919)
T PLN02264 301 PTDSDMMAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLG 378 (919)
T ss_pred CCCCCCcccccccCCCceeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcc
Confidence 3689999999954 47999999999999999999999999999999999998753 999999999999999998874
Q ss_pred cccc-hhhhhhHHHHHHhhhcCccccccCCcccccccccCccccHHHHHHHhhCCCcccccccccCCCCCCCCCCcCCCC
Q 006999 81 KQEG-FWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP 159 (622)
Q Consensus 81 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~W~~D~~Fg~Q~LaG~NP~~I~r~~~~P~~~~l~~~~~g~~ 159 (622)
...+ +++.++|.+.+.++++++.++|||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+||++.||++
T Consensus 379 ~~~~~~~~~p~~~~~~~~~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~ 458 (919)
T PLN02264 379 FQDDIFKKFPLPKVVTTLQESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQ 458 (919)
T ss_pred hhhhHhhcCChHHHHHHhhhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCc
Confidence 2222 333334455556688899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhhccCCCccccccceEEeeCCCCceeeEEEEecCCCCC
Q 006999 160 ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMN 239 (622)
Q Consensus 160 ~~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lf~l~~~g~L~PiAIqL~~~~~~ 239 (622)
+|+||++||++.|+| +||++||++|||||+||||++||+++++|...|++.|||+||||++++|+|+||||||++++++
T Consensus 459 ~s~it~e~v~~~L~G-~Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~ 537 (919)
T PLN02264 459 HSALTEDHIIGHLDG-LSVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSG 537 (919)
T ss_pred cchhhHHHHhhccCC-CcHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCC
Confidence 999999999999998 9999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhhccc
Q 006999 240 GKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEI 319 (622)
Q Consensus 240 ~~~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~I 319 (622)
+++..++||||+++++++|.|+||||||++||+++||+++||++||+++|||+|||+||||.+|||||||.||||+||+|
T Consensus 538 ~~~~~~~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~I 617 (919)
T PLN02264 538 PNSRSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEI 617 (919)
T ss_pred CCcCcceeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHH
Confidence 65567899999766678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccCCCccccccCCCChhHHHHHHHHhcccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHH
Q 006999 320 NGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDL 399 (622)
Q Consensus 320 N~~Ar~~Li~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~d~~~~~g~~~~lp~YpYrdDgl~i 399 (622)
|++||+.||++||++|++|++|+++++|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||||||+|
T Consensus 618 NalAR~~LIn~gGiid~~f~pg~~~~elss~aYk~~W~F~~~~LP~DL~~RGv~~~D~~~phgl~l~ipdYPYrdDGL~i 697 (919)
T PLN02264 618 NALARQTLISADGVIESCFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLLL 697 (919)
T ss_pred HHHHHHhccCCCceEEEeeccchhHHHHHHHHHHhccCCccccCHHHHHHcCCCCCCcccccchhhccCCCcchhhHHHH
Confidence 99999999999999999999999999999999996699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhHhhhccccccccccccc
Q 006999 400 WDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQ 479 (622)
Q Consensus 400 W~aI~~fV~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p~~~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ 479 (622)
|+||++||++||++||++|++|++|.|||+||+||++.||+++++.+|||+|+|+++||++||+|||+||+|||||||||
T Consensus 698 W~AIk~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFgQ 777 (919)
T PLN02264 698 WSAIQTWVRTYVERYYPDPSLICTDKELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFGQ 777 (919)
T ss_pred HHHHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCccccccCCCCCCCCCchHHHHhhhchHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCCCCC-CCCC
Q 006999 480 YTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEP-AWRE 558 (622)
Q Consensus 480 ~~~~gf~PN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~-~~~~ 558 (622)
|+|+||+||+|++||+|||++ |+++|++|+.+|+++||++||++.||+.+|+++++||+|++||+|||++..+ .|+.
T Consensus 778 ydy~gfvPN~P~~~rrp~P~~--~~~e~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~~~~w~~ 855 (919)
T PLN02264 778 YPYGGYVPNRPPLMRRLIPDE--SDPEYASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTG 855 (919)
T ss_pred ccccccCCCCChHhcCCCCCC--CChhhhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCCcccccc
Confidence 999999999999999999987 5688999999999999999999999999999999999999999999998765 7999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCcCCcceecCCCCCCCCcCCCCccccC
Q 006999 559 DPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPYSISI 622 (622)
Q Consensus 559 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~pY~~L~Ps~~~g~t~~~IpnSisI 622 (622)
|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 856 D~~~~~af~rF~~~L~eIe~~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~G~T~~gIPNSISI 919 (919)
T PLN02264 856 DAEIVEAFYGFSAEIGRIEKEIEKRNADPSRRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 919 (919)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCCCCceeeCCCCCCCCCcCCCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=5.4e-181 Score=1523.71 Aligned_cols=614 Identities=47% Similarity=0.844 Sum_probs=583.7
Q ss_pred ccccCCCCCCCCC----CCccCCCCCcChhhhhhhhhhHHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHHhcCCCCCC
Q 006999 4 LMHADQFSEKREG----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPP 79 (622)
Q Consensus 4 ~~~~~~~~e~~~~----~~ylP~de~f~~~k~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ly~~~~~~~~ 79 (622)
-|+|||.+|||.. .+||||||+|++.|.++|.++++|+++|.++|.++++++.+..+|+||+||.+||++|.++|.
T Consensus 240 ~t~~dp~~esr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~ 319 (866)
T PLN02337 240 PTKTDPNSESRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPN 319 (866)
T ss_pred CCCCCCccccccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCC
Confidence 3789999999943 579999999999999999999999999999999999988778999999999999999999987
Q ss_pred ccccchhhhh--hHHHHHHhhhcCccccccCCcccccccccCccccHHHHHHHhhCCCcccccccccCCCCCCCCCCcCC
Q 006999 80 LKQEGFWNTL--LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYG 157 (622)
Q Consensus 80 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~W~~D~~Fg~Q~LaG~NP~~I~r~~~~P~~~~l~~~~~g 157 (622)
.......+.. ++.+.+.++++++.++|||+|+||++|+.+|++|++||||+|||+||++|+||++||++|+|||++||
T Consensus 320 ~~~~~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg 399 (866)
T PLN02337 320 GPLLEELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYG 399 (866)
T ss_pred chHHHHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcC
Confidence 5432222222 34466777888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhhccCCCccccccceEEeeCCCCceeeEEEEecCCC
Q 006999 158 PPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPP 237 (622)
Q Consensus 158 ~~~~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lf~l~~~g~L~PiAIqL~~~~ 237 (622)
+++|+||++||++.|+| +||++||++|||||+||||.+|||+.++|...++ .|||+||||++++|+|+||||||++|+
T Consensus 400 ~~~s~iT~e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~ 477 (866)
T PLN02337 400 DQNSSITEEHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPH 477 (866)
T ss_pred CccCccCHHHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCC
Confidence 99999999999999998 9999999999999999999889999889986555 999999999999999999999999876
Q ss_pred CCCC--CCCceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhh
Q 006999 238 MNGK--PQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRY 315 (622)
Q Consensus 238 ~~~~--~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~ 315 (622)
..++ ++.++||||+++++++|.|+|||+||++||+++||+++||++||+++|||+|||+||||.+|||||||.||||+
T Consensus 478 ~~~~~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~ 557 (866)
T PLN02337 478 PQGDKFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRD 557 (866)
T ss_pred CCcccCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHH
Confidence 4322 35689999998766789999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHhcccCCCccccccCCCChhHHHHHHHHhcccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchh
Q 006999 316 TMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFAND 395 (622)
Q Consensus 316 tl~IN~~Ar~~Li~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~d~~~~~g~~~~lp~YpYrdD 395 (622)
||+||++||+.||++||++|+++++|+++++|++++|++ |+|++++||+||++|||+++|+++|||+++.|||||||||
T Consensus 558 Tl~IN~~AR~~LI~~gGiid~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~RGv~~~D~~~p~g~~l~i~dYPYrdD 636 (866)
T PLN02337 558 TMNINALARQILINAGGILESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIKRGVAVEDPSSPHGVRLLIEDYPYAVD 636 (866)
T ss_pred HHHHHHHHHHheeCCCCeeeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHHcCCCccccccccccccccCCCcchhh
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccccCccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhHhhhccccccccc
Q 006999 396 GLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAV 475 (622)
Q Consensus 396 gl~iW~aI~~fV~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p~~~t~~~Lv~~lT~iIf~aS~qHAAV 475 (622)
||+||+||++||++||++||++|++|++|.|||+||+||+++||+++++.+|||+|+|+++||++||+|||+||+|||||
T Consensus 637 GL~iW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAV 716 (866)
T PLN02337 637 GLEIWSAIETWVKEYCAFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCTIIIWIASALHAAV 716 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchHhhccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHhhhhhcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCccccccCCCCCCCCCchHHHHhhhchHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCCCCCC
Q 006999 476 NFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA 555 (622)
Q Consensus 476 NfgQ~~~~gf~PN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~ 555 (622)
|||||+|+||+||+|++||+|||++ |+.++.+|..+|++++|++||++.||+.+|+++++||+|++||+|||+|++..
T Consensus 717 NfgQy~y~gfvPN~P~~~r~~~P~~--~~~e~~~l~~~~e~~~L~tlp~~~qt~~~~~l~~lLS~~s~de~yLG~~~~~~ 794 (866)
T PLN02337 717 NFGQYPYAGYLPNRPTVSRRFMPEP--GTPEYEELEKNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTPE 794 (866)
T ss_pred hcCCcccccccCCCchhhcCCCCCC--CchhhhhhccCcHHHHHHhCCCHHHHHHHHHHHHHhccCCCCceeccCcCCcc
Confidence 9999999999999999999999976 78889999999999999999999999999999999999999999999998778
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCcCCcceecCCC-----CCCCCcCCCCccccC
Q 006999 556 WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFS-----EPGVTGKGVPYSISI 622 (622)
Q Consensus 556 ~~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~pY~~L~Ps~-----~~g~t~~~IpnSisI 622 (622)
|+.|+++++|+++|+++|++||++|++||+++++|||+||+++||+||+|++ +||||||||||||||
T Consensus 795 w~~d~~~~~a~~~F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 795 WTSDAEPLEAFKRFGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDYTGEGGLTGKGIPNSVSI 866 (866)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccccCCCCcccCCCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=8.1e-168 Score=1416.32 Aligned_cols=595 Identities=55% Similarity=0.949 Sum_probs=527.2
Q ss_pred ccccCCCCCCCCCCCccCCCCCcChhhhhhhhhhHHHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHHhcCCCCCCcccc
Q 006999 4 LMHADQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQE 83 (622)
Q Consensus 4 ~~~~~~~~e~~~~~~ylP~de~f~~~k~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~ly~~~~~~~~~~~~ 83 (622)
-+++||.+|||..++||||||+|++.|+.+|.++++|+++|.++|.|++++..+..+|+||+||++||++|.++|.+.
T Consensus 70 ~~~~Dp~sEsr~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~~~-- 147 (667)
T PF00305_consen 70 PTKTDPKSESRSGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPTDL-- 147 (667)
T ss_dssp BESSCTTSBGC-SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--HHH--
T ss_pred CCCCCccccCccccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchhhH--
Confidence 367999999998899999999999999999999999999999999999997767889999999999999998877321
Q ss_pred chhhhh-hHHHHHHhhhcCccccccCCcccccccccCccccHHHHHHHhhCCCcccccccccCCCCCCCCCCcCCCCCCC
Q 006999 84 GFWNTL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESA 162 (622)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~W~~D~~Fg~Q~LaG~NP~~I~r~~~~P~~~~l~~~~~g~~~~~ 162 (622)
.++.. ++.+.+.+.+++++++|||+|++++.++++|++|++||||+|||+||++|+||+++|++++||+++||+++++
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~ 226 (667)
T PF00305_consen 148 -LKKLIPLELLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESP 226 (667)
T ss_dssp -HCCHTTSTTCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-S
T ss_pred -hhhcCcHHHHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCC
Confidence 11111 2335566677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhhccCCCccccccceEEeeCCCCceeeEEEEecCCCCCCCC
Q 006999 163 ITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKP 242 (622)
Q Consensus 163 vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~~n~~~g~~~yA~~~Lf~l~~~g~L~PiAIqL~~~~~~~~~ 242 (622)
||++||+..|+| +||++||++|||||+||+++.+|+++++|. .+++.|||+||||++++|+|+||||||++|+..+.+
T Consensus 227 it~e~i~~~l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~ 304 (667)
T PF00305_consen 227 ITDEHIEPQLEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPP 304 (667)
T ss_dssp TTHHHHHHHCHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-
T ss_pred chHHHhhhccCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccC
Confidence 999999999999 999999999999999999999999999988 789999999999999999999999999887544334
Q ss_pred CCceeeeCCCCCCCchHHHHHHHHHHhhhhhhHHHHHhhhhhccchhHHHHHHhccCCccCchhhccccchhhhccchHH
Q 006999 243 QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGL 322 (622)
Q Consensus 243 ~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~Hqli~Hll~THlv~Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~IN~~ 322 (622)
..++||||+++++.+|.|+|||+||++||+++||+++||++||+|||||+|||+||||.+|||||||.||||+||+||++
T Consensus 305 ~~~~v~tP~~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~ 384 (667)
T PF00305_consen 305 QFNPVFTPSDDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINAL 384 (667)
T ss_dssp EEEEEE-TTSSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHH
T ss_pred ccceeeecCCCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHH
Confidence 56799999965566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCccccccCCCChhHHHHHHHHhcccCCCCccCCchHHHhcCCCCCCCCCCCcccccccCCccchhhHHHHHH
Q 006999 323 ARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDA 402 (622)
Q Consensus 323 Ar~~Li~~gG~id~~~~~g~~~~el~~~~y~~~w~f~~~~lP~dL~~RG~~~~d~~~~~g~~~~lp~YpYrdDgl~iW~a 402 (622)
||.+||++||++|++|++|+++++|++++|++ |+|++++||+||++|||+++|++++||+++.||+||||||||+||+|
T Consensus 385 Ar~~Li~~gG~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~a 463 (667)
T PF00305_consen 385 ARQSLINAGGIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKRGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDA 463 (667)
T ss_dssp HHHHTSSTTSHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHTTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHH
T ss_pred HHHHhhccCcccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhhcccccccccccccccccccCChhHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCccccccCCHHHHHHHHHHHhccCCCCCCCCCCCCCCChhHHHHHHhHhhhcccccccccccccccc
Q 006999 403 IKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTY 482 (622)
Q Consensus 403 I~~fV~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p~~~t~~~Lv~~lT~iIf~aS~qHAAVNfgQ~~~ 482 (622)
|++||++||++||++|++|++|.|||+||+||+++||+++++.++|++|+|+++||++||+|||+||+||||||||||+|
T Consensus 464 I~~~V~~~v~~yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y 543 (667)
T PF00305_consen 464 IKKFVSDYVNLYYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDY 543 (667)
T ss_dssp HHHHHHHHHHHHSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHH
T ss_pred HHHHHHHhhhhhcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccce
Confidence 99999999999999999999999999999999999999999887788999999999999999999999999999999999
Q ss_pred cccCCCccccccCCCCCCCCCchH--HHHhhhchHHHHHccCCChHHHHHHHHHHHHhcCCCCCCccccCCCCCCCCCcH
Q 006999 483 GGYFPNRPTTARCNIATEDPSDEQ--WKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDP 560 (622)
Q Consensus 483 ~gf~PN~P~~lr~p~P~~~kg~~~--~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~~~~d~ 560 (622)
+||+||+|++||+++|.+ +..+ +++++.+||+++|++||++.||+.+|+++++||+|++||+|||+|++.+|+.|+
T Consensus 544 ~g~~PN~P~~~r~~~P~~--~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~~~~~~~LS~~~~de~~Lg~~~~~~w~~d~ 621 (667)
T PF00305_consen 544 YGFVPNRPTALRRPMPPP--TTKEVTYEELLKDPEKDFLSTLPSKQQALLQMAVLELLSRHSPDEEYLGQYPEPHWFSDP 621 (667)
T ss_dssp HSSGGGS-S-BSSSS--T--SSSH--HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTCB-TT--BTTT-SSTTSSSSH
T ss_pred eeecCCCChhhcccCCCC--CcchhhhhhhccChHHHHHHhcCCHHHHHHHHHHHHHhccCCCCcccccCcCcccccccH
Confidence 999999999999888876 4444 899999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCcCCcceecCC
Q 006999 561 VINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPF 606 (622)
Q Consensus 561 ~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~pY~~L~Ps 606 (622)
++++|+++|+++|++||++|++||+++++|||+|+|++||+||+||
T Consensus 622 ~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 622 EAKAAFERFQEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 9999999999999999999999999999999999999999999997
No 5
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=35.32 E-value=25 Score=36.25 Aligned_cols=24 Identities=33% Similarity=0.913 Sum_probs=20.0
Q ss_pred HHHHHHhcccccCccccccCCHHHHHHHHH
Q 006999 404 KQWVTDYVNHYYPDKSLVESDEELQAWWTE 433 (622)
Q Consensus 404 ~~fV~~yv~~yY~~D~~V~~D~ELQaW~~E 433 (622)
.+||..||+.|| ..+.|+..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 579999999999 334689999975
No 6
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=31.16 E-value=86 Score=29.94 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=37.9
Q ss_pred cccCCHHHHHHHHHHHhccCCCCCCCCCCC-CCCChhHHHHHHhHhhhcc
Q 006999 420 LVESDEELQAWWTEIRTVGHGDKKHEPWWP-VLKTPKDLIEIITTIVWVT 468 (622)
Q Consensus 420 ~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~p-~~~t~~~Lv~~lT~iIf~a 468 (622)
-|.+|++|..+++++.++ .....+..|.| .+++.+++..++-.||-+|
T Consensus 11 lIe~dp~l~ml~~~Mf~q-~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~A 59 (141)
T PF12588_consen 11 LIESDPRLYMLFTQMFDQ-PPYNADPTGNPPQIRDYDEMLQLLNHIMTTA 59 (141)
T ss_pred HHhcCHHHHHHHHHHHhC-cccccCCCCCccccccHHHHHHHHHHHHhhC
Confidence 467999999999999987 32223334667 8999999999999999554
No 7
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=25.60 E-value=5.3e+02 Score=27.77 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcccccC-ccccccCCHHHHHHHHHHHhccCCCCC--CC-----CCCC-------CCCChhHHHHHHh
Q 006999 398 DLWDAIKQWVTDYVNHYYP-DKSLVESDEELQAWWTEIRTVGHGDKK--HE-----PWWP-------VLKTPKDLIEIIT 462 (622)
Q Consensus 398 ~iW~aI~~fV~~yv~~yY~-~D~~V~~D~ELQaW~~Ei~~~G~~~~~--~~-----~~~p-------~~~t~~~Lv~~lT 462 (622)
+|-+||.+.-.+|+..=|. |++.+++|.+...+..+...+|.+-.| |. ..++ ...+.++|-++|-
T Consensus 51 ~V~~AINeT~~~fvAV~YG~S~~~~agd~gFe~fyq~~Q~elnTIgKRPDlLiF~~~~~~~sL~~di~~~~~~~l~~~V~ 130 (366)
T PF09545_consen 51 RVLRAINETSSEFVAVRYGPSDAIPAGDEGFELFYQRLQRELNTIGKRPDLLIFKKSDFDDSLMFDISQIPHDKLDKYVK 130 (366)
T ss_pred HHHHHHhhccccEEEEEecCCCCCCcCchhHHHHHHHHHHHhhccCCCCcEEEEeccccchhhccccccCchHHHHHHHH
Confidence 4789999999999998884 899999999999999999886543222 11 0011 2345666777776
Q ss_pred Hhhhcc
Q 006999 463 TIVWVT 468 (622)
Q Consensus 463 ~iIf~a 468 (622)
..|+-.
T Consensus 131 kAI~gv 136 (366)
T PF09545_consen 131 KAIAGV 136 (366)
T ss_pred HhheeE
Confidence 666543
No 8
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.48 E-value=1.2e+02 Score=21.96 Aligned_cols=30 Identities=30% Similarity=0.581 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHhccCCCCCCCCCCCC-CCChhHHHHHHh
Q 006999 423 SDEELQAWWTEIRTVGHGDKKHEPWWPV-LKTPKDLIEIIT 462 (622)
Q Consensus 423 ~D~ELQaW~~Ei~~~G~~~~~~~~~~p~-~~t~~~Lv~~lT 462 (622)
.|.+|+.|..+ .|. . .|+ ..|+++|++.+-
T Consensus 5 s~~~L~~wL~~---~gi--~-----~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKS---HGI--P-----VPKSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHH---cCC--C-----CCCCCCCHHHHHHHHH
Confidence 46789999986 232 1 122 269999998764
No 9
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=21.54 E-value=2.8e+02 Score=31.25 Aligned_cols=110 Identities=25% Similarity=0.297 Sum_probs=73.6
Q ss_pred hHHHHHHhccCCccCchhhccccchhhhccchHHH--------------HhcccCCCccccccCCCChhHHHHH--HHHh
Q 006999 289 EPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLA--------------RQALVNADGIIESSFSPGKYSMEFS--SVAY 352 (622)
Q Consensus 289 Epf~vAt~R~Ls~~HPv~kLL~PH~r~tl~IN~~A--------------r~~Li~~gG~id~~~~~g~~~~el~--~~~y 352 (622)
+-+.+|..+|=|..-=+..+|.|--..++.||..= -..=|+.=|++.-.-+|+.+..|+- +.-|
T Consensus 91 ~~L~~A~q~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~tP~p~vke~~daa~FY 170 (480)
T KOG2675|consen 91 AFLWVASQKQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFY 170 (480)
T ss_pred HHHHHHHhccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHH
Confidence 44677888888888889999999999999998743 2233445577765555666654432 2223
Q ss_pred cccCCCCccCCchHHHh-cCCCCCCCCCCCcccccccCCccchhhHHHHHHHHHHHHHhcccccCccccccCCHHHHHHH
Q 006999 353 DKQWRFDHEALPKDLIS-RGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWW 431 (622)
Q Consensus 353 ~~~w~f~~~~lP~dL~~-RG~~~~d~~~~~g~~~~lp~YpYrdDgl~iW~aI~~fV~~yv~~yY~~D~~V~~D~ELQaW~ 431 (622)
-+ .-|+. ||-+ ..-+ +||+.|+.+| .|||+++
T Consensus 171 ~N----------rvLkEyk~~D----------------------~~hv-----eWvKa~l~l~----------~eL~~YV 203 (480)
T KOG2675|consen 171 TN----------RVLKEYKEKD----------------------PRHV-----EWVKAYLALF----------LELQAYV 203 (480)
T ss_pred HH----------HHHHHhccCC----------------------hhHH-----HHHHHHHHHH----------HHHHHHH
Confidence 22 11221 3331 1222 7999999999 7899999
Q ss_pred HHHHhccCCCCCCC
Q 006999 432 TEIRTVGHGDKKHE 445 (622)
Q Consensus 432 ~Ei~~~G~~~~~~~ 445 (622)
+|-.+-|....++-
T Consensus 204 k~hhtTGl~W~~~g 217 (480)
T KOG2675|consen 204 KEHHTTGLVWNKDG 217 (480)
T ss_pred HHhccccceecCCC
Confidence 99999888766653
No 10
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=16.67 E-value=45 Score=18.07 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q 006999 400 WDAIKQWVTD 409 (622)
Q Consensus 400 W~aI~~fV~~ 409 (622)
|+.|++++++
T Consensus 1 Wn~Ik~~~s~ 10 (11)
T PF05017_consen 1 WNGIKSFFSG 10 (11)
T ss_pred CchHHHHhhc
Confidence 7888888764
Done!