Query 007000
Match_columns 622
No_of_seqs 299 out of 2706
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 17:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 8.8E-93 1.9E-97 792.3 48.6 562 31-593 4-616 (868)
2 PLN02270 phospholipase D alpha 100.0 3.5E-84 7.7E-89 723.9 46.7 534 37-593 4-552 (808)
3 PLN02352 phospholipase D epsil 100.0 2.3E-77 5E-82 668.3 43.8 485 37-594 6-503 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 2.4E-65 5.1E-70 569.0 34.9 514 26-576 61-598 (887)
5 PLN02866 phospholipase D 100.0 2.9E-47 6.3E-52 433.6 28.4 208 211-465 321-549 (1068)
6 PRK12452 cardiolipin synthetas 100.0 5.6E-40 1.2E-44 365.0 23.2 260 213-593 133-397 (509)
7 PRK01642 cls cardiolipin synth 100.0 2.3E-38 5E-43 351.3 23.1 256 214-593 110-371 (483)
8 PRK11263 cardiolipin synthase 100.0 1.7E-36 3.8E-41 328.3 22.6 252 215-593 3-259 (411)
9 COG1502 Cls Phosphatidylserine 99.9 2.1E-26 4.5E-31 253.4 21.5 254 217-588 57-319 (438)
10 PRK09428 pssA phosphatidylseri 99.9 2.5E-26 5.4E-31 251.0 19.8 261 217-590 22-302 (451)
11 PHA03003 palmytilated EEV memb 99.9 4E-26 8.6E-31 245.3 16.9 231 250-589 31-277 (369)
12 PHA02820 phospholipase-D-like 99.9 2E-25 4.3E-30 243.1 18.9 235 251-594 27-284 (424)
13 cd04015 C2_plant_PLD C2 domain 99.9 1.6E-24 3.6E-29 206.0 15.8 153 36-188 2-158 (158)
14 cd04016 C2_Tollip C2 domain pr 99.9 6.1E-22 1.3E-26 179.7 14.8 118 40-187 1-121 (121)
15 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.5E-20 3.2E-25 171.8 13.7 115 42-183 1-125 (126)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.2E-20 2.5E-25 172.7 13.0 117 43-186 1-126 (126)
17 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.2E-20 1.1E-24 167.1 14.9 119 43-189 2-121 (121)
18 cd04013 C2_SynGAP_like C2 doma 99.8 3.5E-19 7.6E-24 166.3 15.8 128 33-194 6-145 (146)
19 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.1E-19 4.6E-24 163.4 13.9 119 43-187 2-121 (121)
20 cd08400 C2_Ras_p21A1 C2 domain 99.8 4.5E-19 9.8E-24 162.4 15.5 119 41-189 4-124 (126)
21 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.5E-19 7.7E-24 167.9 14.0 121 42-189 1-133 (150)
22 cd08681 C2_fungal_Inn1p-like C 99.8 2.4E-19 5.2E-24 161.8 11.7 116 41-187 1-118 (118)
23 cd08678 C2_C21orf25-like C2 do 99.8 6.9E-19 1.5E-23 161.0 14.1 123 43-193 1-125 (126)
24 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.5E-18 3.2E-23 159.0 13.3 119 42-188 1-126 (127)
25 cd04044 C2A_Tricalbin-like C2 99.8 3E-18 6.6E-23 155.6 13.6 120 41-189 2-124 (124)
26 cd08377 C2C_MCTP_PRT C2 domain 99.8 4.5E-18 9.8E-23 153.5 14.3 117 41-187 1-118 (119)
27 cd08376 C2B_MCTP_PRT C2 domain 99.8 5.5E-18 1.2E-22 152.4 14.3 113 42-188 1-115 (116)
28 cd08391 C2A_C2C_Synaptotagmin_ 99.8 3.8E-18 8.3E-23 154.2 12.9 120 41-187 1-121 (121)
29 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.7E-18 8.1E-23 155.2 12.5 113 42-187 1-119 (121)
30 cd04036 C2_cPLA2 C2 domain pre 99.8 6.3E-18 1.4E-22 153.0 13.1 113 43-187 2-117 (119)
31 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 8.1E-18 1.8E-22 152.9 13.9 117 43-186 2-120 (121)
32 cd08395 C2C_Munc13 C2 domain t 99.8 4.7E-18 1E-22 154.0 11.8 100 43-169 2-112 (120)
33 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 9.7E-18 2.1E-22 152.6 13.8 117 42-185 1-122 (123)
34 KOG1030 Predicted Ca2+-depende 99.8 2.3E-18 5E-23 160.7 9.8 96 39-161 4-100 (168)
35 cd08677 C2A_Synaptotagmin-13 C 99.8 3.7E-18 8E-23 153.3 10.6 105 34-167 7-118 (118)
36 cd04014 C2_PKC_epsilon C2 doma 99.8 1.3E-17 2.8E-22 153.8 14.6 126 39-189 2-130 (132)
37 cd04024 C2A_Synaptotagmin-like 99.7 1.3E-17 2.8E-22 152.4 13.2 122 41-187 1-128 (128)
38 cd04028 C2B_RIM1alpha C2 domai 99.7 1.4E-17 3E-22 155.9 13.1 118 28-170 14-139 (146)
39 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.1E-17 4.5E-22 152.3 13.5 120 42-188 1-133 (133)
40 cd08381 C2B_PI3K_class_II C2 d 99.7 1.2E-17 2.7E-22 152.1 11.4 101 40-167 12-121 (122)
41 cd08375 C2_Intersectin C2 doma 99.7 3.2E-17 6.9E-22 152.2 14.2 114 41-187 15-135 (136)
42 cd04050 C2B_Synaptotagmin-like 99.7 1.4E-17 3E-22 147.5 11.2 98 43-169 2-102 (105)
43 cd08387 C2A_Synaptotagmin-8 C2 99.7 1.6E-17 3.5E-22 151.3 11.4 104 39-168 14-123 (124)
44 cd08688 C2_KIAA0528-like C2 do 99.7 1.7E-17 3.7E-22 148.2 10.8 101 43-169 1-109 (110)
45 cd04029 C2A_SLP-4_5 C2 domain 99.7 2.4E-17 5.2E-22 150.8 12.0 109 34-167 8-124 (125)
46 cd08373 C2A_Ferlin C2 domain f 99.7 5.6E-17 1.2E-21 148.5 14.2 106 85-193 12-121 (127)
47 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.6E-17 3.4E-22 152.0 10.1 109 35-168 9-125 (125)
48 cd04046 C2_Calpain C2 domain p 99.7 9.4E-17 2E-21 147.0 15.2 121 40-189 2-123 (126)
49 cd04039 C2_PSD C2 domain prese 99.7 2.9E-17 6.2E-22 146.4 11.0 96 41-159 1-99 (108)
50 cd08394 C2A_Munc13 C2 domain f 99.7 4.2E-17 9.1E-22 148.0 12.0 98 40-168 1-100 (127)
51 cd08385 C2A_Synaptotagmin-1-5- 99.7 5.4E-17 1.2E-21 147.8 12.0 104 39-168 14-123 (124)
52 cd08685 C2_RGS-like C2 domain 99.7 4.7E-17 1E-21 147.6 10.2 102 39-167 10-119 (119)
53 cd04045 C2C_Tricalbin-like C2 99.7 8.7E-17 1.9E-21 146.0 11.9 104 41-171 1-105 (120)
54 cd04010 C2B_RasA3 C2 domain se 99.7 1.1E-16 2.4E-21 150.5 12.1 100 43-171 2-124 (148)
55 cd04018 C2C_Ferlin C2 domain t 99.7 9E-17 2E-21 151.4 11.5 116 42-170 1-126 (151)
56 cd08680 C2_Kibra C2 domain fou 99.7 7.9E-17 1.7E-21 147.0 10.7 106 36-167 9-124 (124)
57 cd04041 C2A_fungal C2 domain f 99.7 9.2E-17 2E-21 143.7 10.0 99 41-168 1-107 (111)
58 cd04031 C2A_RIM1alpha C2 domai 99.7 1.7E-16 3.8E-21 144.4 11.7 104 38-168 13-125 (125)
59 cd08382 C2_Smurf-like C2 domai 99.7 2.7E-16 6E-21 143.3 12.7 116 43-185 2-122 (123)
60 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.4E-16 3E-21 146.3 10.7 105 38-167 12-127 (128)
61 cd04030 C2C_KIAA1228 C2 domain 99.7 2E-16 4.4E-21 144.5 11.5 108 34-167 9-126 (127)
62 cd04027 C2B_Munc13 C2 domain s 99.7 3.2E-16 7E-21 143.6 12.8 113 42-184 2-126 (127)
63 cd04051 C2_SRC2_like C2 domain 99.7 1.3E-16 2.9E-21 145.5 10.1 112 42-183 1-125 (125)
64 cd04017 C2D_Ferlin C2 domain f 99.7 5.4E-16 1.2E-20 143.7 14.2 118 42-190 2-134 (135)
65 cd04043 C2_Munc13_fungal C2 do 99.7 6.7E-16 1.5E-20 140.9 14.2 113 42-188 2-121 (126)
66 cd08521 C2A_SLP C2 domain firs 99.7 2.6E-16 5.6E-21 142.9 11.3 104 39-167 12-123 (123)
67 KOG1028 Ca2+-dependent phospho 99.7 5.8E-16 1.3E-20 168.8 15.7 201 38-272 164-374 (421)
68 cd08386 C2A_Synaptotagmin-7 C2 99.7 3.2E-16 6.9E-21 142.8 11.5 103 40-168 15-124 (125)
69 cd04040 C2D_Tricalbin-like C2 99.7 4.7E-16 1E-20 139.5 11.9 104 43-172 1-106 (115)
70 cd08406 C2B_Synaptotagmin-12 C 99.7 1.4E-16 3E-21 147.8 8.6 109 38-174 12-128 (136)
71 cd08407 C2B_Synaptotagmin-13 C 99.7 1.6E-16 3.5E-21 147.5 8.9 116 34-175 8-131 (138)
72 cd04049 C2_putative_Elicitor-r 99.7 4E-16 8.7E-21 142.1 11.2 102 41-169 1-108 (124)
73 cd04052 C2B_Tricalbin-like C2 99.7 3.8E-16 8.2E-21 139.8 10.8 100 85-190 10-111 (111)
74 cd08388 C2A_Synaptotagmin-4-11 99.7 5.2E-16 1.1E-20 142.5 12.0 106 38-168 13-127 (128)
75 cd04011 C2B_Ferlin C2 domain s 99.7 5.7E-16 1.2E-20 138.5 11.5 98 41-169 4-110 (111)
76 cd08384 C2B_Rabphilin_Doc2 C2 99.7 3.2E-16 7E-21 144.5 10.1 112 35-174 7-126 (133)
77 cd08390 C2A_Synaptotagmin-15-1 99.7 7.3E-16 1.6E-20 140.0 11.4 108 36-168 9-122 (123)
78 cd08383 C2A_RasGAP C2 domain ( 99.6 2E-15 4.4E-20 135.6 13.9 113 42-187 1-117 (117)
79 cd08692 C2B_Tac2-N C2 domain s 99.6 6.3E-16 1.4E-20 142.1 10.6 115 33-174 6-128 (135)
80 cd08404 C2B_Synaptotagmin-4 C2 99.6 6.3E-16 1.4E-20 143.3 10.3 108 39-174 13-128 (136)
81 cd08676 C2A_Munc13-like C2 dom 99.6 6.9E-16 1.5E-20 145.6 10.5 97 41-167 28-153 (153)
82 cd00138 PLDc Phospholipase D. 99.6 3E-15 6.5E-20 144.2 14.8 143 251-462 22-169 (176)
83 cd08389 C2A_Synaptotagmin-14_1 99.6 9.5E-16 2.1E-20 140.0 10.4 103 39-168 14-123 (124)
84 KOG0696 Serine/threonine prote 99.6 1.6E-16 3.5E-21 165.2 5.3 108 36-170 175-289 (683)
85 cd04032 C2_Perforin C2 domain 99.6 1.9E-15 4E-20 138.4 11.6 103 24-156 13-118 (127)
86 cd08402 C2B_Synaptotagmin-1 C2 99.6 9E-16 1.9E-20 142.2 8.8 112 35-174 9-128 (136)
87 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.8E-15 3.8E-20 144.6 10.8 103 39-167 25-136 (162)
88 cd08690 C2_Freud-1 C2 domain f 99.6 6.6E-15 1.4E-19 138.9 13.9 102 85-189 22-138 (155)
89 cd08405 C2B_Synaptotagmin-7 C2 99.6 1.8E-15 3.9E-20 140.2 9.9 108 39-174 13-128 (136)
90 cd04038 C2_ArfGAP C2 domain pr 99.6 3.4E-15 7.3E-20 140.0 11.6 93 41-161 2-95 (145)
91 cd08410 C2B_Synaptotagmin-17 C 99.6 1.4E-15 3E-20 141.0 8.8 109 38-174 11-128 (135)
92 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.6E-15 3.5E-20 140.1 8.9 108 39-174 12-127 (134)
93 cd08675 C2B_RasGAP C2 domain s 99.6 3.4E-15 7.4E-20 138.7 11.0 101 43-170 1-121 (137)
94 PHA03003 palmytilated EEV memb 99.6 5.1E-15 1.1E-19 159.5 13.8 139 251-462 217-363 (369)
95 cd00276 C2B_Synaptotagmin C2 d 99.6 2.5E-15 5.5E-20 138.2 9.5 107 40-174 13-127 (134)
96 PRK12452 cardiolipin synthetas 99.6 2.6E-15 5.7E-20 167.8 11.5 152 220-462 329-480 (509)
97 cd08408 C2B_Synaptotagmin-14_1 99.6 2.4E-15 5.2E-20 139.9 8.6 114 34-174 8-130 (138)
98 cd04026 C2_PKC_alpha_gamma C2 99.6 7.5E-15 1.6E-19 135.0 11.3 107 37-170 9-122 (131)
99 PRK13912 nuclease NucT; Provis 99.6 3.4E-14 7.4E-19 137.8 16.2 140 250-462 33-174 (177)
100 cd00275 C2_PLC_like C2 domain 99.6 1.8E-14 4E-19 131.4 13.6 118 42-187 3-127 (128)
101 cd04037 C2E_Ferlin C2 domain f 99.6 1.3E-14 2.9E-19 132.4 12.0 89 42-156 1-92 (124)
102 cd08409 C2B_Synaptotagmin-15 C 99.6 4.3E-15 9.3E-20 138.1 8.8 108 39-173 13-128 (137)
103 cd04009 C2B_Munc13-like C2 dom 99.6 8.7E-15 1.9E-19 135.2 10.2 92 40-157 15-118 (133)
104 cd04021 C2_E3_ubiquitin_ligase 99.6 2.4E-14 5.2E-19 130.9 12.7 116 42-185 3-124 (125)
105 cd04035 C2A_Rabphilin_Doc2 C2 99.6 3.4E-14 7.4E-19 129.2 12.5 107 34-166 8-122 (123)
106 cd08691 C2_NEDL1-like C2 domai 99.6 5E-14 1.1E-18 130.8 13.5 115 42-185 2-136 (137)
107 cd04048 C2A_Copine C2 domain f 99.6 1.9E-14 4.1E-19 130.5 10.4 97 46-168 5-113 (120)
108 cd08686 C2_ABR C2 domain in th 99.5 6E-14 1.3E-18 125.8 12.1 79 43-153 1-91 (118)
109 PLN03200 cellulose synthase-in 99.5 9.7E-14 2.1E-18 170.7 10.2 118 40-189 1979-2101(2102)
110 PRK05443 polyphosphate kinase; 99.5 6.7E-13 1.5E-17 151.8 16.4 208 251-595 349-581 (691)
111 TIGR03705 poly_P_kin polyphosp 99.4 2.1E-12 4.5E-17 147.0 16.3 210 251-597 340-574 (672)
112 cd04047 C2B_Copine C2 domain s 99.4 1.4E-12 2.9E-17 116.2 10.2 87 45-158 4-101 (110)
113 KOG2059 Ras GTPase-activating 99.4 5.1E-13 1.1E-17 146.6 8.7 126 41-193 5-130 (800)
114 PRK01642 cls cardiolipin synth 99.4 1.9E-12 4.1E-17 144.4 12.6 152 219-462 302-454 (483)
115 PF00168 C2: C2 domain; Inter 99.3 4.2E-12 9.1E-17 106.2 9.6 80 43-149 1-85 (85)
116 PRK11263 cardiolipin synthase 99.3 6E-12 1.3E-16 137.1 12.5 138 250-464 206-344 (411)
117 KOG1011 Neurotransmitter relea 99.3 2.9E-12 6.2E-17 138.6 8.3 124 41-193 295-431 (1283)
118 COG5038 Ca2+-dependent lipid-b 99.3 1.4E-11 3.1E-16 142.1 11.3 134 33-197 431-566 (1227)
119 cd00030 C2 C2 domain. The C2 d 99.3 2.9E-11 6.3E-16 102.8 10.2 99 43-167 1-102 (102)
120 PF13091 PLDc_2: PLD-like doma 99.3 2.8E-11 6.1E-16 109.8 10.6 124 255-459 1-126 (126)
121 COG5038 Ca2+-dependent lipid-b 99.3 1.3E-11 2.8E-16 142.5 9.9 136 26-189 1025-1162(1227)
122 smart00239 C2 Protein kinase C 99.2 5.6E-11 1.2E-15 101.7 10.7 93 42-160 1-97 (101)
123 PHA02820 phospholipase-D-like 99.2 5.9E-11 1.3E-15 129.9 13.0 151 252-462 220-380 (424)
124 KOG1028 Ca2+-dependent phospho 99.2 2.3E-11 4.9E-16 133.0 9.0 115 33-175 290-412 (421)
125 PLN02223 phosphoinositide phos 99.2 9.1E-11 2E-15 129.0 13.3 112 40-175 408-525 (537)
126 PLN02952 phosphoinositide phos 99.1 3.3E-10 7.2E-15 127.0 13.6 121 41-187 470-596 (599)
127 KOG3603 Predicted phospholipas 99.1 7.1E-10 1.5E-14 117.0 12.8 158 251-464 277-441 (456)
128 PLN02230 phosphoinositide phos 99.1 8.3E-10 1.8E-14 123.6 12.7 122 41-186 469-596 (598)
129 cd08374 C2F_Ferlin C2 domain s 99.1 7.2E-10 1.6E-14 102.0 9.8 94 42-159 1-125 (133)
130 KOG0169 Phosphoinositide-speci 99.1 5.8E-10 1.3E-14 124.9 10.5 121 42-188 617-744 (746)
131 PLN02222 phosphoinositide phos 99.0 1.8E-09 3.8E-14 120.9 13.3 123 41-187 452-580 (581)
132 PLN02228 Phosphoinositide phos 99.0 3.1E-09 6.8E-14 118.5 13.2 125 41-189 431-562 (567)
133 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3E-09 6.4E-14 92.8 8.1 88 43-157 1-88 (109)
134 KOG1264 Phospholipase C [Lipid 98.8 1.1E-08 2.5E-13 113.8 10.2 120 41-191 1065-1192(1267)
135 KOG1031 Predicted Ca2+-depende 98.8 1.3E-08 2.8E-13 109.7 8.3 128 41-198 3-146 (1169)
136 COG1502 Cls Phosphatidylserine 98.8 3.9E-08 8.5E-13 108.5 11.7 135 253-462 273-409 (438)
137 KOG3603 Predicted phospholipas 98.6 3.3E-06 7.2E-11 89.7 20.7 189 202-464 32-227 (456)
138 PF00614 PLDc: Phospholipase D 98.6 9E-09 2E-13 68.3 0.8 27 365-399 2-28 (28)
139 KOG1328 Synaptic vesicle prote 98.6 1.2E-08 2.7E-13 112.5 1.5 119 43-189 116-302 (1103)
140 KOG1328 Synaptic vesicle prote 98.6 1.5E-08 3.3E-13 111.7 1.5 99 32-156 936-1048(1103)
141 PRK09428 pssA phosphatidylseri 98.5 1.9E-06 4E-11 95.2 13.8 141 251-461 252-407 (451)
142 KOG0905 Phosphoinositide 3-kin 98.0 7.2E-06 1.6E-10 95.3 5.1 109 33-167 1516-1633(1639)
143 KOG2059 Ras GTPase-activating 97.9 1.3E-05 2.8E-10 89.3 6.0 105 85-189 148-277 (800)
144 PF07894 DUF1669: Protein of u 97.9 0.0002 4.4E-09 73.6 14.1 156 217-460 116-279 (284)
145 KOG1013 Synaptic vesicle prote 97.9 5.5E-06 1.2E-10 85.2 2.3 124 41-191 93-232 (362)
146 KOG1326 Membrane-associated pr 97.9 7.6E-06 1.7E-10 94.1 3.6 88 40-153 612-702 (1105)
147 PLN02964 phosphatidylserine de 97.8 1.9E-05 4E-10 90.1 5.2 101 38-172 51-156 (644)
148 smart00155 PLDc Phospholipase 97.8 1.5E-05 3.2E-10 53.2 2.5 25 366-398 3-27 (28)
149 cd08683 C2_C2cd3 C2 domain fou 97.8 2.9E-05 6.2E-10 70.2 4.6 112 43-167 1-143 (143)
150 KOG1013 Synaptic vesicle prote 97.7 3.3E-05 7.2E-10 79.6 4.5 107 33-167 225-339 (362)
151 KOG1011 Neurotransmitter relea 97.5 0.00027 6E-09 77.9 9.0 100 42-168 1126-1236(1283)
152 PF13918 PLDc_3: PLD-like doma 97.5 0.00038 8.2E-09 67.0 7.7 57 251-307 83-140 (177)
153 TIGR03705 poly_P_kin polyphosp 97.4 0.001 2.2E-08 76.7 11.5 144 240-465 494-643 (672)
154 PRK05443 polyphosphate kinase; 97.4 0.0011 2.4E-08 76.9 11.6 135 247-465 510-651 (691)
155 cd08684 C2A_Tac2-N C2 domain f 97.3 0.00024 5.2E-09 60.0 3.3 75 91-167 24-103 (103)
156 COG3886 Predicted HKD family n 96.8 0.016 3.5E-07 55.9 11.9 141 249-461 38-179 (198)
157 KOG1326 Membrane-associated pr 96.8 0.00033 7.1E-09 81.1 0.3 100 42-169 207-317 (1105)
158 KOG1265 Phospholipase C [Lipid 96.8 0.0049 1.1E-07 70.8 9.0 99 39-173 701-809 (1189)
159 PLN02352 phospholipase D epsil 96.6 0.005 1.1E-07 71.3 7.5 59 249-307 452-519 (758)
160 PF11495 Regulator_TrmB: Archa 95.9 0.04 8.6E-07 55.9 9.5 49 250-309 10-58 (233)
161 KOG2060 Rab3 effector RIM1 and 95.9 0.0055 1.2E-07 64.6 3.1 107 40-171 268-381 (405)
162 KOG1327 Copine [Signal transdu 95.8 0.015 3.3E-07 64.5 6.4 72 85-157 154-236 (529)
163 PLN02866 phospholipase D 95.6 0.051 1.1E-06 64.8 10.0 82 215-307 705-790 (1068)
164 KOG3837 Uncharacterized conser 95.6 0.0089 1.9E-07 63.6 3.3 99 88-189 388-504 (523)
165 KOG3964 Phosphatidylglycerolph 95.6 0.015 3.3E-07 61.7 4.9 143 216-402 25-172 (469)
166 PLN02270 phospholipase D alpha 95.4 0.061 1.3E-06 62.8 9.4 60 248-307 497-569 (808)
167 PLN03008 Phospholipase D delta 95.2 0.029 6.3E-07 65.5 5.9 57 251-307 568-633 (868)
168 PF13090 PP_kinase_C: Polyphos 95.0 0.17 3.7E-06 53.6 10.5 137 251-458 19-161 (352)
169 cd08398 C2_PI3K_class_I_alpha 95.0 0.18 3.8E-06 48.1 9.8 85 40-154 7-105 (158)
170 PF12416 DUF3668: Cep120 prote 94.9 0.27 5.9E-06 52.5 11.9 119 43-191 2-135 (340)
171 KOG1329 Phospholipase D1 [Lipi 94.8 0.075 1.6E-06 62.0 7.7 148 243-403 559-729 (887)
172 PF10358 NT-C2: N-terminal C2 94.4 0.86 1.9E-05 42.1 12.6 117 41-191 7-138 (143)
173 COG0855 Ppk Polyphosphate kina 93.7 0.27 5.8E-06 55.7 9.0 93 245-377 350-447 (696)
174 cd08693 C2_PI3K_class_I_beta_d 93.2 0.62 1.3E-05 45.1 9.7 70 41-138 8-86 (173)
175 PF15627 CEP76-C2: CEP76 C2 do 92.0 0.98 2.1E-05 42.8 8.9 103 88-191 32-153 (156)
176 cd08380 C2_PI3K_like C2 domain 91.6 1.2 2.6E-05 42.1 9.2 87 41-154 8-106 (156)
177 cd08397 C2_PI3K_class_III C2 d 91.3 0.83 1.8E-05 43.6 7.8 69 85-153 27-105 (159)
178 cd00138 PLDc Phospholipase D. 90.2 0.15 3.2E-06 48.7 1.7 49 543-591 20-78 (176)
179 cd04012 C2A_PI3K_class_II C2 d 90.1 1.4 3.1E-05 42.4 8.4 89 39-153 6-117 (171)
180 PF00792 PI3K_C2: Phosphoinosi 88.6 2.2 4.8E-05 39.6 8.3 65 90-154 4-84 (142)
181 KOG1327 Copine [Signal transdu 88.6 0.64 1.4E-05 52.0 5.2 86 99-187 40-131 (529)
182 KOG1452 Predicted Rho GTPase-a 87.9 1.1 2.3E-05 46.7 5.9 89 33-146 43-134 (442)
183 cd08399 C2_PI3K_class_I_gamma 86.7 5.6 0.00012 38.7 10.0 36 103-138 49-88 (178)
184 PF15625 CC2D2AN-C2: CC2D2A N- 86.4 4 8.7E-05 39.2 8.8 66 88-153 37-104 (168)
185 PRK13912 nuclease NucT; Provis 85.5 0.44 9.6E-06 46.2 1.7 47 543-590 32-83 (177)
186 PF14429 DOCK-C2: C2 domain in 83.6 3.1 6.8E-05 40.4 6.8 53 102-154 61-120 (184)
187 cd08695 C2_Dock-B C2 domains f 80.1 3.7 8E-05 40.3 5.7 51 102-152 55-111 (189)
188 cd08692 C2B_Tac2-N C2 domain s 79.7 2.1 4.6E-05 39.7 3.8 52 214-271 36-89 (135)
189 cd08687 C2_PKN-like C2 domain 79.3 5.9 0.00013 34.2 5.9 63 88-154 9-71 (98)
190 KOG4269 Rac GTPase-activating 77.7 7.8 0.00017 45.7 8.1 203 33-309 751-970 (1112)
191 smart00142 PI3K_C2 Phosphoinos 77.3 14 0.00031 32.1 8.1 51 88-138 32-91 (100)
192 cd08694 C2_Dock-A C2 domains f 77.1 5.6 0.00012 39.2 5.9 52 101-152 54-113 (196)
193 PF13090 PP_kinase_C: Polyphos 76.6 24 0.00053 37.7 10.9 133 250-464 183-320 (352)
194 cd08679 C2_DOCK180_related C2 74.1 7.9 0.00017 37.5 6.2 50 103-153 56-114 (178)
195 PF13091 PLDc_2: PLD-like doma 72.1 1.5 3.2E-05 39.2 0.5 24 549-572 1-24 (126)
196 PF11618 DUF3250: Protein of u 71.8 19 0.00041 32.1 7.5 94 91-188 2-105 (107)
197 cd08696 C2_Dock-C C2 domains f 71.2 13 0.00029 36.1 6.9 39 101-139 55-96 (179)
198 KOG0694 Serine/threonine prote 71.1 1.3 2.8E-05 50.8 -0.1 93 88-189 28-122 (694)
199 cd08697 C2_Dock-D C2 domains f 66.4 19 0.00041 35.3 6.9 39 100-138 56-97 (185)
200 cd08406 C2B_Synaptotagmin-12 C 66.3 8.2 0.00018 35.7 4.2 85 179-272 2-91 (136)
201 cd08407 C2B_Synaptotagmin-13 C 64.7 7.5 0.00016 36.1 3.6 87 179-272 2-93 (138)
202 cd08392 C2A_SLP-3 C2 domain fi 55.3 31 0.00066 31.4 5.9 85 179-271 2-91 (128)
203 PF13918 PLDc_3: PLD-like doma 45.7 69 0.0015 31.2 6.8 27 438-464 7-34 (177)
204 cd04029 C2A_SLP-4_5 C2 domain 44.4 61 0.0013 29.2 6.0 54 213-271 37-91 (125)
205 COG0855 Ppk Polyphosphate kina 43.3 1E+02 0.0023 35.7 8.7 49 251-311 518-570 (696)
206 cd08393 C2A_SLP-1_2 C2 domain 43.3 62 0.0014 29.0 5.9 85 179-271 2-91 (125)
207 cd05137 RasGAP_CLA2_BUD2 CLA2/ 42.5 27 0.00059 38.3 4.0 45 144-190 1-46 (395)
208 cd08409 C2B_Synaptotagmin-15 C 39.9 33 0.00072 31.5 3.6 85 179-271 2-89 (137)
209 cd08381 C2B_PI3K_class_II C2 d 39.3 49 0.0011 29.6 4.6 36 213-251 33-68 (122)
210 cd08677 C2A_Synaptotagmin-13 C 38.4 34 0.00073 31.0 3.3 56 213-274 32-88 (118)
211 KOG3698 Hyaluronoglucosaminida 37.5 19 0.00041 40.7 1.8 90 245-344 57-156 (891)
212 COG1553 DsrE Uncharacterized c 35.7 1.2E+02 0.0025 27.8 6.2 61 240-307 6-79 (126)
213 PTZ00447 apical membrane antig 32.8 1.9E+02 0.004 31.1 8.0 92 89-185 75-170 (508)
214 KOG2419 Phosphatidylserine dec 32.5 11 0.00023 43.1 -1.1 54 86-141 303-358 (975)
215 KOG0904 Phosphatidylinositol 3 30.1 1.1E+02 0.0023 36.8 6.2 84 24-136 324-420 (1076)
216 cd04028 C2B_RIM1alpha C2 domai 27.3 1.1E+02 0.0023 28.8 4.8 35 214-251 52-86 (146)
217 PF09345 DUF1987: Domain of un 26.3 1.3E+02 0.0029 26.3 4.9 53 251-309 26-84 (99)
218 TIGR00230 sfsA sugar fermentat 22.5 3E+02 0.0066 27.9 7.3 54 252-307 159-213 (232)
219 COG2248 Predicted hydrolase (m 21.0 2.2E+02 0.0048 29.5 5.8 66 234-306 200-275 (304)
220 PRK14465 ribosomal RNA large s 20.7 7.6E+02 0.017 26.6 10.3 92 239-346 229-324 (342)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=8.8e-93 Score=792.29 Aligned_cols=562 Identities=49% Similarity=0.860 Sum_probs=475.5
Q ss_pred cCcceeEeeceEEEEEEEEeecCCCCCcccccccccccc------c--cccccccccc--------cCCCCCCCCcEEEE
Q 007000 31 QGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGK------L--NVKVTSKIES--------HLSDKITSDPYVTV 94 (622)
Q Consensus 31 ~~~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~------~--~~~~~~~~~~--------~~~~~g~~DPYv~V 94 (622)
.-|+++++.||+|.++|++|++|++||++++...+.|.. . ..++.+++.+ ++...+++||||+|
T Consensus 4 ~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I 83 (868)
T PLN03008 4 KVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTV 83 (868)
T ss_pred ccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEE
Confidence 457899999999999999999999999876543333320 0 0111111111 22235789999999
Q ss_pred EECCEEEeeeeeecCCCCCeeeeEEEEecCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 95 SICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 95 ~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
.+++++++||+|+++++||+|||+|.|++.+....|.|+|+|+|.+++++||++.|||++|..|...+.|++|.+..+++
T Consensus 84 ~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 84 VVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKP 163 (868)
T ss_pred EECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCC
Confidence 99988888999999999999999999999887889999999999999999999999999999999999999999999999
Q ss_pred cccCceEEEEEEeeccccccccccCCCCCCCccCCCCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHH
Q 007000 175 CKAGAVLSLSIQYTPVENMSLYYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQD 254 (622)
Q Consensus 175 ~k~~G~I~L~l~f~p~~~l~~~~~g~~~~~~~~~~~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~ 254 (622)
.+.+++|+++++|.|..+.+.|.+|++++++|.+++.++||.+.||+|+||+|++-.|+..|.+.|++|..|.++.||++
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwed 243 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWED 243 (868)
T ss_pred CCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccEEEEEEEeecceeeEEeCCC----CchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChH
Q 007000 255 VYDAINQARRLIYITGWSVYHTVRLVRDGS----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDE 330 (622)
Q Consensus 255 l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~----~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~ 330 (622)
++.||++||+.|||..|+++|+++|.|+.. ...+|.++|++||++||+|.||+||+..|....+.+..++|.++++
T Consensus 244 i~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thde 323 (868)
T PLN03008 244 ICYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDE 323 (868)
T ss_pred HHHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccH
Confidence 999999999999999999999999999863 3689999999999999999999999999876666778899999999
Q ss_pred HHHhhhcCCCeEEEecCCCCCCCccccccc-----------ccccccccccceEEEccCCccCcceeEEEEcccccCCcc
Q 007000 331 ETRRFFKHSSVQVLLCPRSAGKGHSFVKKQ-----------EVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGR 399 (622)
Q Consensus 331 ~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~-----------~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~ 399 (622)
++.++|++.+|.|.++|+..+...+|.+.. ..++.++||||+||||++.++.+++.+|||||+|+|++|
T Consensus 324 et~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gR 403 (868)
T PLN03008 324 ETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGR 403 (868)
T ss_pred HHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCc
Confidence 999999999999999986544444444321 234679999999999997776778899999999999999
Q ss_pred cCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhccCCCC----cccccCCC
Q 007000 400 YDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHG----LQKLKSSN 475 (622)
Q Consensus 400 ~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~~~~~~~----~~~~~~~~ 475 (622)
|||++|..+++++..+.+||+|+++.+. .+.+++||||+|++|+||+|.+|+.+|.+||+.+++... .++...+.
T Consensus 404 wDT~~H~l~~~l~t~~~~D~~np~~~~~-~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~ 482 (868)
T PLN03008 404 YDTPEHRILHDLDTVFKDDFHNPTFPAG-TKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ 482 (868)
T ss_pred cCCcCCCccccccccccccccCccccCC-CCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence 9999999999888888899999986542 345678999999999999999999999999999887421 11111112
Q ss_pred ccchhhcccCcccccCc--------------cccCCC--CCCCCcccceEeeeccccccCCCCCCCcccccccccccccc
Q 007000 476 DDSLLKLERIPEIVGMT--------------EASYLS--ENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNV 539 (622)
Q Consensus 476 ~~~~~~~~~~p~~~~~~--------------~~~~~~--~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~ 539 (622)
.+.++.+++++.++..+ +.+... ..+++++.+|++||.+.++.+++|..|.....+.+++|+|.
T Consensus 483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~ 562 (868)
T PLN03008 483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRL 562 (868)
T ss_pred cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccccc
Confidence 23344444443221110 000000 13457789999999999999999999998888999999999
Q ss_pred cchhHHHHHHHHHHHHccceEEEEeccccccccCcccccCcCCcccCchhhccc
Q 007000 540 LIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGESICDNEQMKDV 593 (622)
Q Consensus 540 ~~e~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~~~~~~~~~~~~~~~~~ 593 (622)
..|+||+.+|++||++||||||||||||+.....|....+.|+.|+||.++...
T Consensus 563 ~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~k 616 (868)
T PLN03008 563 VVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALK 616 (868)
T ss_pred chhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHH
Confidence 999999999999999999999999999999999998888899999999776554
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3.5e-84 Score=723.86 Aligned_cols=534 Identities=43% Similarity=0.795 Sum_probs=450.0
Q ss_pred EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCC-CCCee
Q 007000 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNS-ESPVW 115 (622)
Q Consensus 37 ~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t-~nPvW 115 (622)
++.||+|.|+|++|++|++++. . ++|+++..+....++ ..++++||||.|.+++.+++||+++.+. .||+|
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~----~~~~~~~~~~~~~~~---~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w 75 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-P----GFLGKLVANVEETVG---VGKGESQLYATIDLEKARVGRTRKIENEPKNPRW 75 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-h----hHHHHHHhccchhcc---CCCCCCCceEEEEeCCcEEEEEeecCCCCCCCcc
Confidence 4789999999999999998653 1 223333223332222 1256899999999999999999999984 69999
Q ss_pred eeEEEEecCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeeccccccc
Q 007000 116 MQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMSL 195 (622)
Q Consensus 116 NE~f~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~~~l~~ 195 (622)
||+|.+++.+..+.+.|+|+|.|.++..+||.+.||+++|..|...+.||++.+.+|++.+.+..|+++++|.|..+.+.
T Consensus 76 ~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~ 155 (808)
T PLN02270 76 YESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRN 155 (808)
T ss_pred ccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred cccCCCCCCCccCCCCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecc
Q 007000 196 YYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYH 275 (622)
Q Consensus 196 ~~~g~~~~~~~~~~~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p 275 (622)
|.+|+++ ++|++++.++||.+.||+|+||+|++-.|+..|.+.+.+|+.|.+..||+++.+||.+||++|||..|+|+|
T Consensus 156 ~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~ 234 (808)
T PLN02270 156 WGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYT 234 (808)
T ss_pred hhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCC
Confidence 9999965 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeCCC-----CchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCCeEEEecCCCC
Q 007000 276 TVRLVRDGS-----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSA 350 (622)
Q Consensus 276 ~~~i~~~~~-----~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~ 350 (622)
.++|.|++. ...+|.++|++||++||+|+||+||+.++..+ .+..+.|.++++++.++|++.+|+++++++..
T Consensus 235 ~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P 312 (808)
T PLN02270 235 EISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRNP 312 (808)
T ss_pred CceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCCc
Confidence 999998753 23799999999999999999999998887543 23457788899999999999999999987643
Q ss_pred CCCcccccccccccccccccceEEEccCCcc---CcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCC
Q 007000 351 GKGHSFVKKQEVGTIYTHHQKTVVVDADAGQ---FKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEP 427 (622)
Q Consensus 351 ~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~---~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~ 427 (622)
.....|......+..++||||+||||++.|+ .+++.+|||||+|+|++||||++|.++++++..|.+||++|.|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~ 392 (808)
T PLN02270 313 DDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGA 392 (808)
T ss_pred ccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccc
Confidence 2223344334456789999999999996543 2577799999999999999999999999999999999999988652
Q ss_pred --CCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhccCCCCcccccCCCccchhhcccCcccccCccccCCCCCCCCcc
Q 007000 428 --IAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAW 505 (622)
Q Consensus 428 --~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 505 (622)
..+.+++||||+|++|+||+|.+|+.+|.+||+.++++..+-++ +.++.... ++.+..-..+++.|
T Consensus 393 ~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll~~~-----------~~~~~~~~-P~~~~~~p~d~~~w 460 (808)
T PLN02270 393 SITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDILVQL-----------RELEDVII-PPSPVMFPDDHEVW 460 (808)
T ss_pred cccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccchhhh-----------cccccccC-CCCcccCCCcCCcc
Confidence 24567899999999999999999999999999998876421111 11111000 00111112355679
Q ss_pred cceEeeeccccccCCCCCCCcccccccccccccccchhHHHHHHHHHHHHccceEEEEeccccccccCcccc----cCcC
Q 007000 506 HAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH----RDLG 581 (622)
Q Consensus 506 ~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~----~~~~ 581 (622)
.||++||.+.++.+++|..|.....+.+++|++...+++|+.+|+.||++|+++||||||||+.....|... +..|
T Consensus 461 ~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~ 540 (808)
T PLN02270 461 NVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDIN 540 (808)
T ss_pred ccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhccccccccccc
Confidence 999999999889999999998877777888887777899999999999999999999999999999988633 7888
Q ss_pred CcccCchhhccc
Q 007000 582 ESICDNEQMKDV 593 (622)
Q Consensus 582 ~~~~~~~~~~~~ 593 (622)
+.++||.++...
T Consensus 541 ~~nlIp~el~~k 552 (808)
T PLN02270 541 ALHLIPKELSLK 552 (808)
T ss_pred ccccchHHHHHH
Confidence 999999886654
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=2.3e-77 Score=668.29 Aligned_cols=485 Identities=38% Similarity=0.652 Sum_probs=403.4
Q ss_pred EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeee
Q 007000 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWM 116 (622)
Q Consensus 37 ~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWN 116 (622)
-++||+|.++|++|+.+... +. +. ..++ .+ .||||.|.+++.+++|| .++.||+||
T Consensus 6 ~~lhg~l~~~i~~~~~~~~~--~~-----~~--------~~~~-----~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~ 61 (758)
T PLN02352 6 KFFHGTLEATIFDATPYTPP--FP-----FN--------CIFL-----NG-KATYVTIKIGNKKVAKT---SHEYDRVWN 61 (758)
T ss_pred cccccceEEEEEEeeehhhc--cc-----cc--------cccc-----CC-CCceEEEEeCCcEEecC---CCCCCCccc
Confidence 36799999999999943211 00 00 0111 22 39999999999999999 667799999
Q ss_pred eEEEEecCCCC-cEEEEEEEecCCcCCeeeEeEEEeceeecCCCe-eeecccccCCCCCccccCceEEEEEEeecccccc
Q 007000 117 QHFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDK-IEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMS 194 (622)
Q Consensus 117 E~f~~~v~~~~-~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~-~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~~~l~ 194 (622)
|+|.+++.+.. ..+.|+|+| +..+||.+.||+++|..|.. .+.|+++.+.+|++.++ ..++++++|.|..+.+
T Consensus 62 e~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 62 QTFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEP 136 (758)
T ss_pred cceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCc
Confidence 99999998887 789999998 57899999999999998866 99999999999998855 7999999999999999
Q ss_pred ccccCCCCCCCccCCCCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeec
Q 007000 195 LYYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVY 274 (622)
Q Consensus 195 ~~~~g~~~~~~~~~~~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~ 274 (622)
.|.+|+++ ++|++++.++||.+.||+|+||+|++..|+..|.+.+ -|.++++|++|.+||++||++|+|++|+|+
T Consensus 137 ~~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d 211 (758)
T PLN02352 137 TWCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFN 211 (758)
T ss_pred chhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEec
Confidence 99999966 6999999999999999999999999999999999988 577888999999999999999999999999
Q ss_pred ceeeEEeCC------CCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCCeEEEecCC
Q 007000 275 HTVRLVRDG------SNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPR 348 (622)
Q Consensus 275 p~~~i~~~~------~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~ 348 (622)
|.++|.|++ ..+.+|.++|++||++||+||||+||+.++..+ .+..++|.+++++..+++++.+|+|+++|+
T Consensus 212 ~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr 289 (758)
T PLN02352 212 PKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPR 289 (758)
T ss_pred CCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeeccc
Confidence 999999876 357999999999999999999999999887544 345566788888888999999999998876
Q ss_pred CCCCCcccccccccccccccccceEEEccCCcc--CcceeEEEEcccccCCcccCCCCCCCcccccc-ccCCCCCCCCCC
Q 007000 349 SAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQ--FKRKIIAFVGGLDLCKGRYDTPAHPLFKTLET-VHKDDYYNPSLL 425 (622)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~--~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~-~~~~~~~~~~~~ 425 (622)
... ..+..++||||+||||++.++ ..++.+|||||+|+|.+||||++|..+++++. .+++||+++.|.
T Consensus 290 ~~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~ 360 (758)
T PLN02352 290 LHK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIA 360 (758)
T ss_pred ccc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCcccccccccccccccccccc
Confidence 431 224568999999999996544 24666999999999999999999999999875 478899999887
Q ss_pred CC--CCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhccCCCCcccccCCCccchhhcccCcccccCccccCCCCCCCC
Q 007000 426 EP--IAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPE 503 (622)
Q Consensus 426 ~~--~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 503 (622)
+. ..+.+++||||+|++|+||||.||..+|.+||+.+++...+ ++...++.....++. +....+
T Consensus 361 g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l-----------~p~~~~~~~~~~p~~---~~~~~~ 426 (758)
T PLN02352 361 GAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSVL-----------VPTSSIRNLVHQPGS---SESNNR 426 (758)
T ss_pred cccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcccc-----------CCcccccccccCCCC---CcccCC
Confidence 53 24567899999999999999999999999999998775311 001111111000011 113457
Q ss_pred cccceEeeeccccccCCCCCCCcccccccccccccccchhHHHHHHHHHHHHccceEEEEeccccccccCcccccCcCCc
Q 007000 504 AWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGES 583 (622)
Q Consensus 504 ~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~~~~~~~ 583 (622)
.|.+||+||.+.++.+++|.+. ..|++|+++|++||++||||||||||||+.....|....+.++.
T Consensus 427 ~w~VQv~RSid~~sa~~~P~~~--------------~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~ 492 (758)
T PLN02352 427 NWKVQVYRSIDHVSASHMPRNL--------------PVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCT 492 (758)
T ss_pred cccceEEEecCccccccCCCCC--------------chhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchh
Confidence 8999999999988887776432 24789999999999999999999999999999999988889999
Q ss_pred ccCchhhccce
Q 007000 584 ICDNEQMKDVN 594 (622)
Q Consensus 584 ~~~~~~~~~~~ 594 (622)
|+||.++.+..
T Consensus 493 N~I~~eIa~kI 503 (758)
T PLN02352 493 NLIPIEIALKI 503 (758)
T ss_pred cchHHHHHHHH
Confidence 99998876653
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-65 Score=568.98 Aligned_cols=514 Identities=49% Similarity=0.771 Sum_probs=420.8
Q ss_pred CCCcccCcceeEeeceEEEEEEEEeecCCCCCcccccccccc------ccccccc--cccccccCC-------CCCCCCc
Q 007000 26 PFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVF------GKLNVKV--TSKIESHLS-------DKITSDP 90 (622)
Q Consensus 26 ~~~~~~~~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~------~~~~~~~--~~~~~~~~~-------~~g~~DP 90 (622)
++..+..+....+.+|.|.++|+++..+.+++.+.......+ .++..+. -.+..+... +..+.++
T Consensus 61 ~~~~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~ 140 (887)
T KOG1329|consen 61 PFVPSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLEN 140 (887)
T ss_pred ccccCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccc
Confidence 445556778999999999999999999997765322111111 1221110 001111111 1133699
Q ss_pred EEEEEECCEEEeeeeeecCC-CCCeeeeEEEEecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 91 YVTVSICGAVIGRTFVISNS-ESPVWMQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 91 Yv~V~l~~~~~~kT~vi~~t-~nPvWNE~f~~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
|+.+.+....+++|..+.+. .+|.|.+.|.+........+.+++.+.+..+ ...+|.+.++...+..+.....|++++
T Consensus 141 Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il 220 (887)
T KOG1329|consen 141 YLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPIL 220 (887)
T ss_pred hheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeee
Confidence 99999999988899998887 8899999999999888889999999999999 899999999999999999999999999
Q ss_pred CCCCCccccCceEEEEEEeeccccccccccCCCCCCCccCCCCCCCCCcCCCeEEEeecCcCCCCccceeEecCCc-ccc
Q 007000 169 NSSRKPCKAGAVLSLSIQYTPVENMSLYYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGV-QFN 247 (622)
Q Consensus 169 ~~~g~~~k~~G~I~L~l~f~p~~~l~~~~~g~~~~~~~~~~~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~-~~~ 247 (622)
+.++++.+++..+++.+.|.+......+.-++.|.+++.+.+.+.++.+.|+.+++|+|.+-+++..|.+-++.|. -|.
T Consensus 221 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd 300 (887)
T KOG1329|consen 221 DNDGKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVD 300 (887)
T ss_pred ccCCccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEc
Confidence 8888888777788999999999988888889999999999999999999999999999999999999999888888 788
Q ss_pred chhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCC--CchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCcc
Q 007000 248 HESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS--NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (622)
Q Consensus 248 ~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~--~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~ 325 (622)
+.++|++++.||.+||+.|||..||++|++++.|+.. ...+|.++|++||++||+|+||+||+.++... .
T Consensus 301 ~~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~--------i 372 (887)
T KOG1329|consen 301 GKKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEGVRVLILVWKDVTSALG--------I 372 (887)
T ss_pred hhhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCCcEEEEEEeccchhccc--------c
Confidence 8889999999999999999999999999999999854 46999999999999999999999999987533 2
Q ss_pred CCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCC
Q 007000 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (622)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H 405 (622)
+++.++...++++.+|+|+++|+..++. ....|.||||+||||. ++|||||+|+|++||||++|
T Consensus 373 ~S~~~k~~l~~lH~nV~vlr~P~~~~~~--------~~~~wtHHeK~VVVD~--------~v~fvGGlDLC~GRYDT~eH 436 (887)
T KOG1329|consen 373 NSHYEKTRLFFLHPNVKVLRCPRHPGSG--------PTTLWTHHEKLVVVDQ--------EVAFVGGLDLCDGRYDTPEH 436 (887)
T ss_pred CchhHHHHHhhcCCCeEEEECCCCcCCC--------CceEEecceEEEEEcc--------eeccccceeccccccCCccc
Confidence 3566788888999999999998764321 1256899999999999 89999999999999999999
Q ss_pred CCccccccccCCCCCCCCCCC----CCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhccCCCCcccccCCCccchhh
Q 007000 406 PLFKTLETVHKDDYYNPSLLE----PIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLK 481 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~ 481 (622)
+++++++.++++||+|++|++ ...+.+++||||+||++.||+|+|+.++|.||||........ +.+.++.
T Consensus 437 ~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~------~~~~~p~ 510 (887)
T KOG1329|consen 437 PLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKP------YDDSLPL 510 (887)
T ss_pred cccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCC------CCcccee
Confidence 999999999999999999987 445788999999999999999999999999999987653211 0111111
Q ss_pred cccCcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCcccccccccccccccchhHHHHHHHHHHHHccceEE
Q 007000 482 LERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIY 561 (622)
Q Consensus 482 ~~~~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~~Iy 561 (622)
+...+++... +.+...++..+.+|+++|.+..+..+ |.......++++.....|.||++||+++|++|+||||
T Consensus 511 L~p~~~~~~~---~~~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIY 583 (887)
T KOG1329|consen 511 LLPISDITGP---SEPNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIY 583 (887)
T ss_pred ecChhhhcCC---CCccccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEE
Confidence 1112222111 11133567789999999987655433 5544555677888777899999999999999999999
Q ss_pred EEeccccccccCccc
Q 007000 562 IENQYFLGSSFNWDS 576 (622)
Q Consensus 562 IenqYFip~~~~~~~ 576 (622)
||||||+.+.+.|..
T Consensus 584 IENQfFi~ss~~~~~ 598 (887)
T KOG1329|consen 584 IENQFFIGSSFNWDS 598 (887)
T ss_pred EeeeeEEeeccCCCc
Confidence 999999999987774
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=2.9e-47 Score=433.56 Aligned_cols=208 Identities=36% Similarity=0.652 Sum_probs=172.0
Q ss_pred CCCCCCc----CCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEe--CCC
Q 007000 211 GTYFPLR----RGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVR--DGS 284 (622)
Q Consensus 211 ~~~~~~~----~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~--~~~ 284 (622)
.+++|++ .||++++|.||.+ +|.+|+++|++||++|+|++|+|+|.+||++ ++.
T Consensus 321 ~SFAP~r~~~~~gN~vk~LvDG~d--------------------yF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D~ 380 (1068)
T PLN02866 321 GSFAPPRGLTEDGSQAQWFIDGHA--------------------AFEAIASAIENAKSEIFITGWWLCPELYLRRPFHDH 380 (1068)
T ss_pred CCcCCCccccCCCCEEEEEeCHHH--------------------HHHHHHHHHHhcccEEEEEEccCCceEEEEecCCCc
Confidence 5667887 5899999999997 8999999999999999999999999999998 467
Q ss_pred CchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhh--cCCCeEEEecCCCCCCCccccccccc
Q 007000 285 NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFF--KHSSVQVLLCPRSAGKGHSFVKKQEV 362 (622)
Q Consensus 285 ~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l--~~~gv~v~~~~~~~~~~~~~~~~~~~ 362 (622)
.+.+|.++|++||++||+||||+||..+.....+ .....+.| .++||+|..+|... + ..
T Consensus 381 ~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~----------S~~~k~~L~~lh~gI~V~r~P~~~----~-----~~ 441 (1068)
T PLN02866 381 ESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN----------SVYSKRRLLGIHENVKVLRYPDHF----S-----SG 441 (1068)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEEECccccccccC----------chhhHHHHHHhCCCeEEEecCccc----c-----cC
Confidence 8899999999999999999999999987421111 01111222 36899987765421 1 12
Q ss_pred ccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCcc-ccccccCCCCCCCCCCCCC------------C
Q 007000 363 GTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFK-TLETVHKDDYYNPSLLEPI------------A 429 (622)
Q Consensus 363 ~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~-~~~~~~~~~~~~~~~~~~~------------~ 429 (622)
.+++|||||++|||+ ++||+||+|||.+||||++|...| .+..|+|+||.|++...+. .
T Consensus 442 ~ln~RhHRKIVVIDg--------~IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~ 513 (1068)
T PLN02866 442 VYLWSHHEKLVIVDY--------QICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRR 513 (1068)
T ss_pred cccccCCCCeEEECC--------CEEEecCcccCCCccCCcccccccccccccCcccccccccccccccccccccccccc
Confidence 468999999999999 899999999999999999999987 4567999999998754321 2
Q ss_pred CCCCCCceeeeeEEeChHHHHHHHHHHHHHhhccCC
Q 007000 430 GGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKP 465 (622)
Q Consensus 430 ~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~~~~~ 465 (622)
..+++||||+|++|+||+|.+|+++|.+|||.+++.
T Consensus 514 ~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~ 549 (1068)
T PLN02866 514 KYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRN 549 (1068)
T ss_pred cCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcc
Confidence 335679999999999999999999999999987764
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=5.6e-40 Score=365.03 Aligned_cols=260 Identities=22% Similarity=0.299 Sum_probs=203.4
Q ss_pred CCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHH
Q 007000 213 YFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDL 292 (622)
Q Consensus 213 ~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~ 292 (622)
..|.+.||++++|.||.+ +|++++++|++||++|+|++| |+++|..|..+.++
T Consensus 133 ~~p~~~~n~~~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~~g~~i~~a 185 (509)
T PRK12452 133 GGPAADRTTTKLLTNGDQ--------------------TFSEILQAIEQAKHHIHIQYY-------IYKSDEIGTKVRDA 185 (509)
T ss_pred CCcccCCCEEEEeCCHHH--------------------HHHHHHHHHHHhCCEEEEEEE-------EEeCCcHHHHHHHH
Confidence 378999999999999997 999999999999999999999 88999999999999
Q ss_pred HHhhhcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccce
Q 007000 293 LKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKT 372 (622)
Q Consensus 293 L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~ 372 (622)
|++||+|||+|||| +|+.|+...+ ..+.+.|+++||++..+.+.. .++. ..+.++|||||+
T Consensus 186 L~~aa~rGV~VRiL-~D~~Gs~~~~------------~~~~~~L~~aGi~v~~f~P~~---~~~~---~~~~n~RnHRKi 246 (509)
T PRK12452 186 LIKKAKDGVIVRFL-YDGLGSNTLR------------RRFLQPMKEAGIEIVEFDPIF---SAWL---LETVNYRNHRKI 246 (509)
T ss_pred HHHHHHCCCEEEEE-EECCCCCCCC------------HHHHHHHHhCCeEEEEecCcc---cccc---cccccCCCCCeE
Confidence 99999999999999 5999985332 356778899999999875542 1221 235789999999
Q ss_pred EEEccCCccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHH
Q 007000 373 VVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDIL 452 (622)
Q Consensus 373 vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~ 452 (622)
+|||| ++||+||+|++++|... ..+..+|||+|++++||+|.+++
T Consensus 247 ~VIDg--------~ia~~GG~Ni~d~y~~~---------------------------~~~~~~WrD~~~~i~Gp~V~~l~ 291 (509)
T PRK12452 247 VIVDG--------EIGFTGGLNVGDEYLGR---------------------------SKKFPVWRDSHLKVEGKALYKLQ 291 (509)
T ss_pred EEEcC--------CEEEeCCcccchhhcCC---------------------------CCCCCCceEEEEEEECHHHHHHH
Confidence 99999 89999999999987642 12356899999999999999999
Q ss_pred HHHHHHHhhccCCCCcccccCCCccchhhcccCcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCccccccc
Q 007000 453 TNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMN 532 (622)
Q Consensus 453 ~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~ 532 (622)
..|.++|+.+++.. .... .......+.+|. . ....+...+|++.+++ ..
T Consensus 292 ~~F~~dW~~~~~~~----~~~~-~~~~~~~~~~~~------~----~~~~~~~~~q~~~sgp-----------~~----- 340 (509)
T PRK12452 292 AIFLEDWLYASSGL----NTYS-WDPFMNRQYFPG------K----EISNAEGAVQIVASGP-----------SS----- 340 (509)
T ss_pred HHHHHHHHHhhCcc----cccc-cccccchhcCCC------c----cccCCCeEEEEEeCCC-----------Cc-----
Confidence 99999999876531 0000 000000000110 0 0112345689888753 21
Q ss_pred ccccccccchhHHHHHHHHHHHHccceEEEEeccccccccCcccc-----cCcCCcccCchhhccc
Q 007000 533 LVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH-----RDLGESICDNEQMKDV 593 (622)
Q Consensus 533 ~~~~~~~~~e~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~-----~~~~~~~~~~~~~~~~ 593 (622)
.+.+|+++|+++|.+||++|||+||||+|++....+| |++.|++++|+. +|+
T Consensus 341 --------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~~l~~aL~~Aa~rGV~Vrii~p~~-~D~ 397 (509)
T PRK12452 341 --------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQETLTLLRLSAISGIDVRILYPGK-SDS 397 (509)
T ss_pred --------hhHHHHHHHHHHHHHhhhEEEEECCccCCCHHHHHHHHHHHHcCCEEEEEcCCC-CCh
Confidence 1368999999999999999999999999998777654 888999999985 565
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.3e-38 Score=351.33 Aligned_cols=256 Identities=21% Similarity=0.325 Sum_probs=202.0
Q ss_pred CCCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHH
Q 007000 214 FPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLL 293 (622)
Q Consensus 214 ~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L 293 (622)
.|.+.||+++++.||++ +|++|+++|++||++|+|++| |+++|..+.++.++|
T Consensus 110 ~~~~~~n~v~ll~~g~~--------------------~~~~l~~~I~~Ak~~I~l~~y-------i~~~d~~g~~i~~aL 162 (483)
T PRK01642 110 IPGLKGNQLRLLTNGDE--------------------TFQAIIRDIELARHYILMEFY-------IWRPDGLGDQVAEAL 162 (483)
T ss_pred CCccCCCEEEEEcCHHH--------------------HHHHHHHHHHHhhcEEEEEEE-------EEccCCcHHHHHHHH
Confidence 78899999999999997 999999999999999999999 889999999999999
Q ss_pred HhhhcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceE
Q 007000 294 KIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTV 373 (622)
Q Consensus 294 ~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~v 373 (622)
.+||+|||+|||| +|+.|+..+.. ..+.+.|+++|+++..+.+.. ..++ ...+.++|||||++
T Consensus 163 ~~aa~rGV~VriL-~D~~Gs~~~~~-----------~~~~~~L~~~Gi~v~~~~p~~--~~~~---~~~~~n~RnHrKi~ 225 (483)
T PRK01642 163 IAAAKRGVRVRLL-YDSIGSFAFFR-----------SPYPEELRNAGVEVVEFLKVN--LGRV---FRRRLDLRNHRKIV 225 (483)
T ss_pred HHHHHCCCEEEEE-EECCCCCCCCc-----------HHHHHHHHHCCCEEEEecCCC--cccc---cccccccccCceEE
Confidence 9999999999999 59999864431 236677899999999873321 0111 12357899999999
Q ss_pred EEccCCccCcceeEEEEcccccCC-cccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHH
Q 007000 374 VVDADAGQFKRKIIAFVGGLDLCK-GRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDIL 452 (622)
Q Consensus 374 VIDg~~~~~~~~~vafvGG~Ni~~-~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~ 452 (622)
|||| ++||+||+|+++ +|+.. ..+.++|+|+|++++||+|.+++
T Consensus 226 VIDg--------~ia~~Gg~Ni~d~~y~~~---------------------------~~~~~~w~D~~~~i~Gp~v~~l~ 270 (483)
T PRK01642 226 VIDG--------YIAYTGSMNVVDPEYFKQ---------------------------DPGVGQWRDTHVRIEGPVVTALQ 270 (483)
T ss_pred EEcC--------CEEEeCCcccCCHHHhCC---------------------------CCCCCCcEEEEEEEEcHHHHHHH
Confidence 9999 899999999999 87642 12356899999999999999999
Q ss_pred HHHHHHHhhccCCCCcccccCCCccchhhcccCcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCccccccc
Q 007000 453 TNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMN 532 (622)
Q Consensus 453 ~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~ 532 (622)
..|.++|+..+++. ... ..|.. ...| ...+++..+|++.++ |...
T Consensus 271 ~~F~~dW~~~~~~~----~~~----------~~~~~---~~~~---~~~~~~~~~qi~~sg-----------P~~~---- 315 (483)
T PRK01642 271 LIFAEDWEWETGER----ILP----------PPPDV---LIMP---FEEASGHTVQVIASG-----------PGDP---- 315 (483)
T ss_pred HHHHHHHHHHhCcc----cCC----------CCccc---ccCC---ccCCCCceEEEEeCC-----------CCCh----
Confidence 99999999876542 000 00100 0000 011234578998775 3221
Q ss_pred ccccccccchhHHHHHHHHHHHHccceEEEEeccccccccCcccc-----cCcCCcccCchhhccc
Q 007000 533 LVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH-----RDLGESICDNEQMKDV 593 (622)
Q Consensus 533 ~~~~~~~~~e~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~-----~~~~~~~~~~~~~~~~ 593 (622)
+..++++|+++|.+|+++|||+||||+|++.+.++| |++.+++++|.. +|+
T Consensus 316 ---------~~~~~~~~~~~I~~A~~~I~I~tpYfip~~~i~~aL~~Aa~rGV~Vril~p~~-~d~ 371 (483)
T PRK01642 316 ---------EETIHQFLLTAIYSARERLWITTPYFVPDEDLLAALKTAALRGVDVRIIIPSK-NDS 371 (483)
T ss_pred ---------hhHHHHHHHHHHHHhccEEEEEcCCcCCCHHHHHHHHHHHHcCCEEEEEeCCC-CCc
Confidence 358999999999999999999999999998777755 888999999985 555
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=1.7e-36 Score=328.33 Aligned_cols=252 Identities=21% Similarity=0.272 Sum_probs=193.3
Q ss_pred CCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHH
Q 007000 215 PLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLK 294 (622)
Q Consensus 215 ~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~ 294 (622)
+++.||++++|.||++ +|++++++|++||++|+|++| |+.+|..|..|.++|+
T Consensus 3 ~~~~gN~v~ll~~G~e--------------------~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~~g~~l~~aL~ 55 (411)
T PRK11263 3 SWREGNRIQLLENGEQ--------------------YYPRVFEAIAAAQEEILLETF-------ILFEDKVGKQLHAALL 55 (411)
T ss_pred cccCCCeEEEEeCHHH--------------------HHHHHHHHHHHhCCEEEEEEE-------EEecCchHHHHHHHHH
Confidence 6889999999999997 999999999999999999999 7888899999999999
Q ss_pred hhhcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEE
Q 007000 295 IKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVV 374 (622)
Q Consensus 295 ~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vV 374 (622)
+||+|||+||||+ |..|+..+. ..+.+.|.++||+++.+.+.. .++ .....++.|+|+|++|
T Consensus 56 ~aa~rGV~Vril~-D~~gs~~~~------------~~~~~~L~~aGv~v~~~~p~~----~~~-~~~~~~~~R~HrKiiV 117 (411)
T PRK11263 56 AAAQRGVKVEVLV-DGYGSPDLS------------DEFVNELTAAGVRFRYFDPRP----RLL-GMRTNLFRRMHRKIVV 117 (411)
T ss_pred HHHHCCCEEEEEE-ECCCCCCCC------------HHHHHHHHHCCeEEEEeCCcc----ccc-ccccccccCCcceEEE
Confidence 9999999999995 999875332 356778899999999875431 111 0112234699999999
Q ss_pred EccCCccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHH
Q 007000 375 VDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTN 454 (622)
Q Consensus 375 IDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~~~ 454 (622)
||| ++||+||+|++++|+.. .+...|+|+|++|+||+|.+++..
T Consensus 118 IDg--------~~a~vGg~N~~~~~~~~----------------------------~g~~~w~D~~v~i~Gp~V~~l~~~ 161 (411)
T PRK11263 118 IDG--------RIAFVGGINYSADHLSD----------------------------YGPEAKQDYAVEVEGPVVADIHQF 161 (411)
T ss_pred EcC--------CEEEEcCeEchHhhccc----------------------------cCCCCceEEEEEEECHHHHHHHHH
Confidence 999 89999999999987642 123469999999999999999999
Q ss_pred HHHHHhhccCCCCcccccCCCccchhhcccCcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCccccccccc
Q 007000 455 FEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLV 534 (622)
Q Consensus 455 F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~ 534 (622)
|.+.|....... . .+.. ...+ + .....+...+|++.+. |..
T Consensus 162 f~~~w~~~~~~~----~------~~~~-~~~~--------~--~~~~~g~~~~~~v~~~-----------p~~------- 202 (411)
T PRK11263 162 ELEALPGQSAAR----R------WWRR-HHRA--------E--ENRQPGEAQALLVWRD-----------NEE------- 202 (411)
T ss_pred HHHHHhhcccch----h------hhcc-cccC--------c--ccCCCCCeEEEEEECC-----------Ccc-------
Confidence 999997542110 0 0000 0000 0 0012344467777553 221
Q ss_pred ccccccchhHHHHHHHHHHHHccceEEEEeccccccccCcccc-----cCcCCcccCchhhccc
Q 007000 535 CGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH-----RDLGESICDNEQMKDV 593 (622)
Q Consensus 535 ~~~~~~~e~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~-----~~~~~~~~~~~~~~~~ 593 (622)
....|+++|+.+|.+|+++|||+||||+|+..+..+| |++.|++++|+. +|+
T Consensus 203 ------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~~l~~aL~~Aa~RGV~V~ii~~~~-~d~ 259 (411)
T PRK11263 203 ------HRDDIERHYLKALRQARREVIIANAYFFPGYRLLRALRNAARRGVRVRLILQGE-PDM 259 (411)
T ss_pred ------hHHHHHHHHHHHHHHhceEEEEEecCcCCCHHHHHHHHHHHHCCCEEEEEeCCC-CCc
Confidence 1358999999999999999999999999987665543 888999999986 554
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.94 E-value=2.1e-26 Score=253.39 Aligned_cols=254 Identities=24% Similarity=0.307 Sum_probs=189.8
Q ss_pred cCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhh
Q 007000 217 RRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIK 296 (622)
Q Consensus 217 ~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~a 296 (622)
..++.++++.++.+ .|.+++++|++|+++|++++| ++.+++.+..+.++|.++
T Consensus 57 ~~~~~~~~l~~~~~--------------------~~~~~~~~i~~a~~~I~~~~~-------i~~~d~~~~~i~~~l~~~ 109 (438)
T COG1502 57 ISGNGVDLLKDGAD--------------------AFAALIELIEAAKKSIYLQYY-------IWQDDELGREILDALIEA 109 (438)
T ss_pred CCCCceEEecCHHH--------------------HHHHHHHHHHHHhhEEEEEEE-------EEeCChhHHHHHHHHHHH
Confidence 67889999999987 899999999999999999999 899999999999999999
Q ss_pred hcCCCeEEEEEeCCCcc-cccccccccCccCCChHHHHhhhcCCCe-EEEecCCCCCCCcccccccccccccccccceEE
Q 007000 297 SQEGVRVLILAWDDPTS-RSILGYKTDGIMSTNDEETRRFFKHSSV-QVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVV 374 (622)
Q Consensus 297 a~rGV~VriLv~D~~gs-~~~~~~~~~~~~~~~~~~~~~~l~~~gv-~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vV 374 (622)
|++||+||+++ |+.|+ ..+. ......++++++ ++..+.+..+. .......+.|+|+|++|
T Consensus 110 a~~gv~vr~l~-D~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~r~H~K~~v 171 (438)
T COG1502 110 AKRGVEVRLLL-DDIGSTRGLL------------KSLLALLKRAGIEEVRLFNPASPR-----PLRFRRLNRRLHRKIVV 171 (438)
T ss_pred HHcCCEEEEEE-ecCCCccccc------------HHHHHHHhcCCceEEEecCCcccc-----cchhhhhhccccceEEE
Confidence 99999999996 99987 3221 356777889998 66665433210 01234578999999999
Q ss_pred EccCCccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHH
Q 007000 375 VDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTN 454 (622)
Q Consensus 375 IDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~~~ 454 (622)
||+ .++|+||+|++++|+... ....+|+|+++++.||+|.++...
T Consensus 172 iD~--------~i~~vGg~N~~d~y~~~~---------------------------~~~~~~~D~~~~~~g~~v~~l~~~ 216 (438)
T COG1502 172 IDG--------KVAFVGGANIGDEYFHKD---------------------------KGLGYWRDLHVRITGPAVADLARL 216 (438)
T ss_pred EcC--------CEEEecCcccchhhhccC---------------------------cCcccceeeeEEEECHHHHHHHHH
Confidence 999 899999999999998531 124589999999999999999999
Q ss_pred HHHHHhhccCCCCcccccCCCccchhhcccCcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCccccccccc
Q 007000 455 FEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLV 534 (622)
Q Consensus 455 F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~ 534 (622)
|.++|+........ +. .... ...+. .. .........+|++.+.|.... .
T Consensus 217 f~~~w~~~~~~~~~--~~----~~~~--~~~~~------~~--~~~~~~~~~~~~~~~~P~~~~---------~------ 265 (438)
T COG1502 217 FIQDWNLESGSSKP--LL----ALVR--PPLQS------LS--LLPVGRGSTVQVLSSGPDKGL---------G------ 265 (438)
T ss_pred HHHHhhhccCcCcc--cc----cccc--ccccc------cc--ccccccCcceEEEecCCcccc---------c------
Confidence 99999987432100 00 0000 00000 00 001112223678777542100 0
Q ss_pred ccccccchhH--HHHHHHHHHHHccceEEEEeccccccccCcccc-----cCcCCcccCch
Q 007000 535 CGKNVLIDMS--IHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH-----RDLGESICDNE 588 (622)
Q Consensus 535 ~~~~~~~e~~--I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~-----~~~~~~~~~~~ 588 (622)
... +...|+.+|.+|+++|+|++|||+|+..+.+++ +++.+++++|.
T Consensus 266 -------~~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~~~~~al~~a~~~Gv~V~ii~~~ 319 (438)
T COG1502 266 -------SELIELNRLLLKAINSARESILIATPYFVPDRELLAALKAAARRGVDVRIIIPS 319 (438)
T ss_pred -------hhhhhHHHHHHHHHHhhceEEEEEcCCcCCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence 122 458999999999999999999999999888765 77889999993
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.94 E-value=2.5e-26 Score=251.00 Aligned_cols=261 Identities=15% Similarity=0.157 Sum_probs=175.4
Q ss_pred cCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhh
Q 007000 217 RRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIK 296 (622)
Q Consensus 217 ~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~a 296 (622)
..+++++++.+|.+ +|++|+++|++|+++|+|++| ++.+|+.|..|.++|.+|
T Consensus 22 ~~~~~v~~l~~~~~--------------------f~~~Ll~~I~~Ak~~I~l~~y-------~~~~D~~g~~il~AL~~a 74 (451)
T PRK09428 22 QSPDDVETLYSPAD--------------------FRETLLEKIASAKKRIYIVAL-------YLEDDEAGREILDALYQA 74 (451)
T ss_pred cCcccEEEEcCHHH--------------------HHHHHHHHHHhcCCeEEEEEE-------EecCCchHHHHHHHHHHH
Confidence 36788999999987 999999999999999999999 889999999999999998
Q ss_pred h--cCCCeEEEEEeCCCcc-cccccccccCccCCChHHHHhhhcCC--CeEEEecC-CCCCCCccccccccccccccccc
Q 007000 297 S--QEGVRVLILAWDDPTS-RSILGYKTDGIMSTNDEETRRFFKHS--SVQVLLCP-RSAGKGHSFVKKQEVGTIYTHHQ 370 (622)
Q Consensus 297 a--~rGV~VriLv~D~~gs-~~~~~~~~~~~~~~~~~~~~~~l~~~--gv~v~~~~-~~~~~~~~~~~~~~~~~~~r~Hr 370 (622)
+ ++||+|+||+ |+... ++..|... ...+..+...++++ |+++.++. +. +....+.|+|+
T Consensus 75 ~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~----~~~~~~~~~~l~~~~~gv~v~~f~~p~----------~~~e~~gr~Hr 139 (451)
T PRK09428 75 KQQNPELDIKVLV-DWHRAQRGLIGAAA----SNTNADWYCEMAQEYPGVDIPVYGVPV----------NTREALGVLHL 139 (451)
T ss_pred HhcCCCcEEEEEE-EcccccccccccCC----CCcCHHHHHHHHHhCCCceEEEcCCcc----------ccchhhhhcee
Confidence 5 4899999996 98521 11111000 00123455666654 69998873 21 12235688999
Q ss_pred ceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHH
Q 007000 371 KTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYD 450 (622)
Q Consensus 371 K~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~d 450 (622)
|++|||| +++|+| +||++.|+... .+. ..|.+++|+||++.+
T Consensus 140 Ki~IiD~--------~v~ysG-aNi~d~Yl~~~---------------------------~~~--r~Dry~~i~g~~la~ 181 (451)
T PRK09428 140 KGFIIDD--------TVLYSG-ASLNNVYLHQH---------------------------DKY--RYDRYHLIRNAELAD 181 (451)
T ss_pred eEEEECC--------CEEEec-ccccHHHhcCC---------------------------ccc--CcceEEEEeCchHHH
Confidence 9999999 899997 79999887421 111 237788899999999
Q ss_pred HHHHHHHHHhhccCCCCcccccCCCccch-hhc--------ccCcccccCccccCCCCCCCCcccceEeeeccccccCCC
Q 007000 451 ILTNFEERWLKASKPHGLQKLKSSNDDSL-LKL--------ERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGF 521 (622)
Q Consensus 451 l~~~F~~~W~~~~~~~~~~~~~~~~~~~~-~~~--------~~~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~ 521 (622)
+...|.++|..+++.. ..+... +.+. ... ..+.. ....+ . ...+...+++.+..+
T Consensus 182 ~~~~fi~~~~~~~~~v--~~l~~~-~~~~~~~~~~~~~~~~~~l~~---~~~~~--~-~~~~~~~~~v~p~~g------- 245 (451)
T PRK09428 182 SMVNFIQQNLLNSPAV--NRLDQP-NRPKTKEIKNDIRQFRQRLRD---AAYQF--Q-GQANNDELSVTPLVG------- 245 (451)
T ss_pred HHHHHHHHHhhccCcc--cccccc-ccccchhhHHHHHHHHHHHhh---hccCc--c-cccCCCCeEEeeeec-------
Confidence 9999999998765421 001000 0000 000 00000 00000 0 001111233333211
Q ss_pred CCCCcccccccccccccccchhHHHHHHHHHHHHccceEEEEeccccccccCcccc-----cCcCCcccCchhh
Q 007000 522 PVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH-----RDLGESICDNEQM 590 (622)
Q Consensus 522 ~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~-----~~~~~~~~~~~~~ 590 (622)
.|+ ...+.+.+..+|.+|++.|+|+||||+|++.+..++ +++.+++++|...
T Consensus 246 -------------~g~----~~~l~~~~~~li~~A~~~i~I~TPYF~p~~~l~~~L~~a~~rGv~V~Ii~~~~~ 302 (451)
T PRK09428 246 -------------LGK----KNLLNKTIFHLMASAEQKLTICTPYFNLPAILVRNIIRLLRRGKKVEIIVGDKT 302 (451)
T ss_pred -------------cCC----chHHHHHHHHHHhccCcEEEEEeCCcCCCHHHHHHHHHHHhcCCcEEEEcCCcc
Confidence 011 147889999999999999999999999998777754 6788999999873
No 11
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.94 E-value=4e-26 Score=245.35 Aligned_cols=231 Identities=18% Similarity=0.209 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCCh
Q 007000 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (622)
Q Consensus 250 ~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~ 329 (622)
.+|+++.++|++||++|+|++|.| ++.+|..|.+|.++|++||+|||+||||+ |+.|+.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~-----~~~~d~~g~~i~~aL~~aa~rGV~Vril~-D~~~~~--------------- 89 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCC-----NLRSTPEGRLILDKLKEAAESGVKVTILV-DEQSGD--------------- 89 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEe-----cccCCchHHHHHHHHHHhccCCCeEEEEe-cCCCCC---------------
Confidence 379999999999999999999932 27789999999999999999999999995 976531
Q ss_pred HHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCcc
Q 007000 330 EETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFK 409 (622)
Q Consensus 330 ~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~ 409 (622)
...+.|+++||+++.++... + +....+|+|++|||| ++||+||+||+++|+...
T Consensus 90 -~~~~~L~~~Gv~v~~~~~~~------~-----~~~~~~~~k~~IiDg--------~~~y~Gg~Ni~~~~~~~~------ 143 (369)
T PHA03003 90 -KDEEELQSSNINYIKVDIGK------L-----NNVGVLLGSFWVSDD--------RRCYIGNASLTGGSISTI------ 143 (369)
T ss_pred -ccHHHHHHcCCEEEEEeccc------c-----CCCCceeeeEEEEcC--------cEEEEecCccCCcccCcc------
Confidence 24567889999998763210 0 001236899999999 899999999999887531
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhccCCCCcccccCCCccchhhcccCcccc
Q 007000 410 TLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIV 489 (622)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 489 (622)
...+.|+|. ||+|.+|+..|.+.|+..+++...... ......|..
T Consensus 144 ---------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~--------~~~~~~~~~- 188 (369)
T PHA03003 144 ---------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRL--------CCACCLPVS- 188 (369)
T ss_pred ---------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCccccc--------ccccCCccc-
Confidence 124579984 999999999999999977543200000 000000100
Q ss_pred cCccccCCCCCCCCcccceEeeeccccccCCCCCCCcccccccccccccccchhHHHHHHHHHHHHccceEEEEeccccc
Q 007000 490 GMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLG 569 (622)
Q Consensus 490 ~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~~IyIenqYFip 569 (622)
.+. ....+ ...+++.+. |.... . .....++.+|+++|.+||++|+|++|||+|
T Consensus 189 ----~~~-~~~~~--~~~~~~~s~-----------P~~~~------~---~~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P 241 (369)
T PHA03003 189 ----TKY-HINNP--IGGVFFSDS-----------PEHLL------G---YSRTLDADVVLHKIKSAKKSIDLELLSLVP 241 (369)
T ss_pred ----ccc-cccCC--CcceEEecC-----------ChHHc------C---CCCCcCHHHHHHHHHHHhhEEEEEEecccc
Confidence 000 00011 112244333 22100 0 001358899999999999999999999999
Q ss_pred cc-----------cCccc-----ccCcCCcccCchh
Q 007000 570 SS-----------FNWDS-----HRDLGESICDNEQ 589 (622)
Q Consensus 570 ~~-----------~~~~~-----~~~~~~~~~~~~~ 589 (622)
.. +..++ .|++.|++++|..
T Consensus 242 ~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~~~ 277 (369)
T PHA03003 242 VIREDDKTTYWPDIYNALIRAAINRGVKVRLLVGSW 277 (369)
T ss_pred EEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 63 22221 3777899999874
No 12
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.93 E-value=2e-25 Score=243.10 Aligned_cols=235 Identities=15% Similarity=0.119 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhcccEEEEEEEeecceeeEEeCCC----CchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccC
Q 007000 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMS 326 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~----~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~ 326 (622)
+|+.+.++|.+||++|+|++|.|. .++. .|.+|.++|++||+|||+||||+ |..+. +
T Consensus 27 t~~~~~~lI~~Ak~~I~I~s~yf~------~~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~---~--------- 87 (424)
T PHA02820 27 TFNFWREILSNTTKTLDISSFYWS------LSDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNK---P--------- 87 (424)
T ss_pred HHHHHHHHHHhhCcEEEEEeEEEe------cCccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCC---c---------
Confidence 799999999999999999999332 1333 48999999999999999999995 96532 1
Q ss_pred CChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCC
Q 007000 327 TNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHP 406 (622)
Q Consensus 327 ~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~ 406 (622)
....+.|+++||+++.+++.. + ...++|+|++|||+ +++|+||+|+.+.++.
T Consensus 88 ---~~~~~~L~~aGv~v~~~~~~~-----~-------~~~~~HrK~~VIDg--------~~~~iGS~Nid~rsl~----- 139 (424)
T PHA02820 88 ---LKDVELLQMAGVEVRYIDITN-----I-------LGGVLHTKFWISDN--------THIYLGSANMDWRSLT----- 139 (424)
T ss_pred ---hhhHHHHHhCCCEEEEEecCC-----C-------CcccceeeEEEECC--------CEEEEeCCcCChhhhh-----
Confidence 123466888999998864321 1 24689999999999 8999999999875542
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEE--eChHHHHHHHHHHHHHhhccCCCCcccccCCCccchhhccc
Q 007000 407 LFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRI--DGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLER 484 (622)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri--~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (622)
..+|+++++ +||+|.+|++.|.++|+..++.. +. .+. ..
T Consensus 140 ----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~-~~-----~~~-----~~ 180 (424)
T PHA02820 140 ----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNL-PY-----NWK-----NF 180 (424)
T ss_pred ----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCC-CC-----ccc-----cc
Confidence 124777777 79999999999999999765321 00 000 01
Q ss_pred CcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCcccccccccccccccchhHHHHHHHHHHHHccceEEEEe
Q 007000 485 IPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIEN 564 (622)
Q Consensus 485 ~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~~IyIen 564 (622)
+|... ....|.. ....+....+++.+.+... .+. .....+.+|+.+|.+|+++|||++
T Consensus 181 ~~~~~-~~~~p~~-~~~~~~~~~~~~sssP~~~------~~~--------------~r~~~~~~~l~~I~~Ak~~I~I~t 238 (424)
T PHA02820 181 YPLYY-NTDHPLS-LNVSGVPHSVFIASAPQQL------CTM--------------ERTNDLTALLSCIRNASKFVYVSV 238 (424)
T ss_pred ccccc-ccCCCcc-cccCCccceEEEeCCChhh------cCC--------------CCCchHHHHHHHHHHHhhEEEEEE
Confidence 11100 0000000 0111122244554432100 000 113568999999999999999999
Q ss_pred cccccc-----------ccCcccc------cCcCCcccCchhhccce
Q 007000 565 QYFLGS-----------SFNWDSH------RDLGESICDNEQMKDVN 594 (622)
Q Consensus 565 qYFip~-----------~~~~~~~------~~~~~~~~~~~~~~~~~ 594 (622)
|||+|+ +.+.++| |++.|++++|.. +|+-
T Consensus 239 pyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~~-~d~~ 284 (424)
T PHA02820 239 MNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCW-QRSS 284 (424)
T ss_pred ccccceeeccCCcccchHHHHHHHHHHHHhCCCEEEEEEecc-CCCC
Confidence 999999 2333332 778899999985 6663
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.92 E-value=1.6e-24 Score=206.02 Aligned_cols=153 Identities=50% Similarity=0.791 Sum_probs=127.5
Q ss_pred eEeeceEEEEEEEEeecCCCCCcccccccccccccccccccccc----ccCCCCCCCCcEEEEEECCEEEeeeeeecCCC
Q 007000 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIE----SHLSDKITSDPYVTVSICGAVIGRTFVISNSE 111 (622)
Q Consensus 36 ~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~ 111 (622)
.++.||+|+|+|++|++|++||..+..+.++++++...+....+ ......|++||||+|++++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 46889999999999999999997555555566544332222110 11124788999999999988878999999999
Q ss_pred CCeeeeEEEEecCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEee
Q 007000 112 SPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (622)
Q Consensus 112 nPvWNE~f~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~ 188 (622)
||+|||+|.|++.+..+.|.|.|+|++..++++||++.++++++..+...+.|++|.+.++++.+..+.|+++++|.
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999987778999999999988889999999999999988888999999888888877889999999984
No 14
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=6.1e-22 Score=179.74 Aligned_cols=118 Identities=18% Similarity=0.323 Sum_probs=102.5
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeE
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQH 118 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~-t~nPvWNE~ 118 (622)
.|+|+|+|++|++|+..+ .|++||||+|.++++++ ||+++.+ +.||+|||+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~---------------------------~g~sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~ 52 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG---------------------------LTRMDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKT 52 (121)
T ss_pred CcEEEEEEEEccCCCcCC---------------------------CCCCCceEEEEECCEEE-EeEEccCCCCCCccCeE
Confidence 389999999999988654 25689999999999988 9999876 899999999
Q ss_pred EEEecCCCCcEEEEEEEecCCcC-CeeeEeEEEece-eecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 119 FNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVE-KLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 119 f~~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~-~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
|.|++.+....|.|+|||+|.++ |++||.+.++|. .+..|...+.|++|....+++ ..|+|+|+++|
T Consensus 53 F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 53 IQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred EEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 99999876678999999999988 789999999995 577888789999997766553 56899999986
No 15
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=1.5e-20 Score=171.81 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=100.3
Q ss_pred EEEEEEEEeec---CCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE
Q 007000 42 NLDIWVKEAKN---LPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (622)
Q Consensus 42 ~L~v~V~~A~~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~ 118 (622)
.|+|+|++|++ |+.+|. .|++||||+|++++++. ||+++++++||+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~--------------------------~g~sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~ 53 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDG--------------------------RGSTDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQ 53 (126)
T ss_pred CeEEEEEEeECCcccccccc--------------------------CCCCCeeEEEEECCEEe-EcCcccCCCCCcceeE
Confidence 38999999999 776664 57799999999999987 9999999999999999
Q ss_pred EEEecCCCCcEEEEEEEecCCc-------CCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEE
Q 007000 119 FNVPVAHSAAEVHFVVKDNDFV-------GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSL 183 (622)
Q Consensus 119 f~~~v~~~~~~L~l~V~D~d~~-------~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L 183 (622)
|.|++.+....|+|+|||++.. ++++||++.++|+++..+...+.||+|...+++..+..|+|++
T Consensus 54 f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 54 YTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 9999977677899999999876 6899999999999999888899999998665555556777764
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=1.2e-20 Score=172.72 Aligned_cols=117 Identities=23% Similarity=0.372 Sum_probs=99.8
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
++|+|++|++|+.+|. .|++||||+|++++++. ||+++++++||+|||+|.|.
T Consensus 1 ~~V~V~~A~~L~~~d~--------------------------~g~~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~ 53 (126)
T cd08682 1 VQVTVLQARGLLCKGK--------------------------SGTNDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFE 53 (126)
T ss_pred CEEEEEECcCCcCCCC--------------------------CcCCCceEEEEECCeee-eeeeecCCCCCEeCceEEEE
Confidence 5899999999998764 56799999999998877 99999999999999999998
Q ss_pred cCC------CCcEEEEEEEecCCcC-CeeeEeEEEeceeec--CCCeeeecccccCCCCCccccCceEEEEEE
Q 007000 123 VAH------SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC--SGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (622)
Q Consensus 123 v~~------~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~--~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~ 186 (622)
+.. ....|.|+|||++.++ +++||++.|+|+++. .+.....||+|....++..+..|+|+|.++
T Consensus 54 v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 54 LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 866 3478999999999887 899999999999987 566678999997655544456689988764
No 17
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.84 E-value=5.2e-20 Score=167.13 Aligned_cols=119 Identities=27% Similarity=0.381 Sum_probs=105.0
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|+|+|++|++|+.+|. .+++||||++.+++....||+++.++.||+|||+|.|.
T Consensus 2 L~v~v~~a~~L~~~d~--------------------------~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~ 55 (121)
T cd04042 2 LDIHLKEGRNLAARDR--------------------------GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLP 55 (121)
T ss_pred eEEEEEEeeCCCCcCC--------------------------CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEE
Confidence 7899999999998775 46689999999988666699999999999999999999
Q ss_pred cCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeec
Q 007000 123 VAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 123 v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
+....+.|.|+|||++..+ +++||++.++|+++..+...+.|++|.+..+. +..|+|+|.+.|.|
T Consensus 56 v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 56 IEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred ecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 8776788999999999885 89999999999999988888999999765542 45789999999876
No 18
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.81 E-value=3.5e-19 Score=166.30 Aligned_cols=128 Identities=20% Similarity=0.353 Sum_probs=110.6
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCC
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSES 112 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~n 112 (622)
+.|.. ..|.|+|+||++|+.+ .+|||+|.++++.++||+++.++.|
T Consensus 6 ~~R~~---~sL~v~V~EAk~Lp~~-------------------------------~~~Y~~i~Ld~~~vaRT~v~~~~~n 51 (146)
T cd04013 6 SRRTE---NSLKLWIIEAKGLPPK-------------------------------KRYYCELCLDKTLYARTTSKLKTDT 51 (146)
T ss_pred ceEEE---EEEEEEEEEccCCCCc-------------------------------CCceEEEEECCEEEEEEEEEcCCCC
Confidence 45555 8899999999999864 3799999999999999999999999
Q ss_pred CeeeeEEEEecCCCCcEEEEEEEecC-Cc----CCeeeEeEEEeceeecCCCeeeecccccCCCCCc-------cccCce
Q 007000 113 PVWMQHFNVPVAHSAAEVHFVVKDND-FV----GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP-------CKAGAV 180 (622)
Q Consensus 113 PvWNE~f~~~v~~~~~~L~l~V~D~d-~~----~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~-------~k~~G~ 180 (622)
|+|||.|.|+..+....++|+|++.+ .. ++++||.+.||+++|..+...+.||+|....+.+ .+..++
T Consensus 52 P~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~ 131 (146)
T cd04013 52 LFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPS 131 (146)
T ss_pred CcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCE
Confidence 99999999998766788999996543 33 4689999999999999999999999999877775 456689
Q ss_pred EEEEEEeecccccc
Q 007000 181 LSLSIQYTPVENMS 194 (622)
Q Consensus 181 I~L~l~f~p~~~l~ 194 (622)
|+++++|.+...++
T Consensus 132 lrik~rf~~~~~lP 145 (146)
T cd04013 132 IRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEEEeeeCC
Confidence 99999999987665
No 19
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=2.1e-19 Score=163.40 Aligned_cols=119 Identities=24% Similarity=0.313 Sum_probs=100.6
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|+|+|++|++|+.++.. +|.+||||+|.++++..+||+++++|.||+|||+|.|.
T Consensus 2 l~v~v~~a~~L~~~~~~-------------------------~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~ 56 (121)
T cd08401 2 LKIKIGEAKNLPPRSGP-------------------------NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFE 56 (121)
T ss_pred eEEEEEEccCCCCCCCC-------------------------CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEE
Confidence 68999999999986521 45689999999988777799999999999999999999
Q ss_pred cCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 123 VAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 123 v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
+.+....|.|.|||++..+ +++||.+.++|+++..+...+.||+|.... ...+..|+|+|.++|
T Consensus 57 v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~~ 121 (121)
T cd08401 57 IPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-ADSEVQGKVHLELRL 121 (121)
T ss_pred cCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-CCCcccEEEEEEEEC
Confidence 9866678999999999886 899999999999998877789999996432 112346899998765
No 20
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.81 E-value=4.5e-19 Score=162.35 Aligned_cols=119 Identities=20% Similarity=0.331 Sum_probs=99.8
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
..|+|+|++|+||+..+ .+||||+|++++...+||+++ ++.||+|||+|.
T Consensus 4 ~~L~V~Vi~A~~L~~~~-----------------------------~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~ 53 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH-----------------------------VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFV 53 (126)
T ss_pred eEEEEEEEEeeCCCCCC-----------------------------CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEE
Confidence 46899999999998532 479999999998776799974 689999999999
Q ss_pred EecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeec
Q 007000 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 121 ~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
|++.... ..++|.|+|++..+ +++||++.++|+++..+...+.|++|....+...+..|+|+|.++|.+
T Consensus 54 f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 54 FDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9865443 67899999998876 889999999999999888889999997654322345699999999986
No 21
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3.5e-19 Score=167.92 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=102.7
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHFN 120 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~-t~nPvWNE~f~ 120 (622)
.|+|+|++|++|+++|. .|++||||+|+++++.. ||+++.+ +.||+|||+|.
T Consensus 1 ~L~V~Vi~A~~L~~~d~--------------------------~g~sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~ 53 (150)
T cd04019 1 YLRVTVIEAQDLVPSDK--------------------------NRVPEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELM 53 (150)
T ss_pred CEEEEEEEeECCCCCCC--------------------------CCCCCeEEEEEECCEEe-eeEeccCCCCCCcccCcEE
Confidence 38999999999998875 46799999999999776 9999877 69999999999
Q ss_pred EecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCC----CeeeecccccCCCC-----CccccCceEEEEEEeec
Q 007000 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG----DKIEGAFPILNSSR-----KPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 121 ~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g----~~~~~W~~L~~~~g-----~~~k~~G~I~L~l~f~p 189 (622)
|.+.+.. +.|.|.|+|++..+ +++||++.++|+++..+ ...+.||+|.+..+ ++.+..|+|+|.+.|.+
T Consensus 54 f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 54 FVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9986543 68999999998875 89999999999998743 44689999987654 44566799999999984
No 22
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.80 E-value=2.4e-19 Score=161.78 Aligned_cols=116 Identities=18% Similarity=0.320 Sum_probs=99.0
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHF 119 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~-t~nPvWNE~f 119 (622)
|.|+|+|++|++|+.++. .+++||||+|++++++. ||+++.+ +.||+|||+|
T Consensus 1 g~L~V~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f 53 (118)
T cd08681 1 GTLVVVVLKARNLPNKRK--------------------------LDKQDPYCVLRIGGVTK-KTKTDFRGGQHPEWDEEL 53 (118)
T ss_pred CEEEEEEEEccCCCCCCc--------------------------CCCCCceEEEEECCCcc-ccccccCCCCCCccCceE
Confidence 689999999999998875 45689999999998665 8998765 7999999999
Q ss_pred EEecCCC-CcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 120 NVPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 120 ~~~v~~~-~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
.|.+... .+.|.|+|||++..++++||++.++++++..+...+.|++|.. .++ ..|+|+|.++|
T Consensus 54 ~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 54 RFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred EEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 9999764 4789999999988778899999999999877767889999964 343 45899999886
No 23
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.80 E-value=6.9e-19 Score=161.00 Aligned_cols=123 Identities=18% Similarity=0.295 Sum_probs=103.1
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeecCCCCCeeeeEEEE
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~-~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
|.|+|++|++|+. . .|++||||++.++. ....||++++++.||+|||+|.|
T Consensus 1 l~v~v~~A~~L~~--~--------------------------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f 52 (126)
T cd08678 1 LLVKNIKANGLSE--A--------------------------AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLF 52 (126)
T ss_pred CEEEEEEecCCCC--C--------------------------CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEE
Confidence 5799999999985 2 45799999999974 23349999999999999999999
Q ss_pred ecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeeccccc
Q 007000 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVENM 193 (622)
Q Consensus 122 ~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~~~l 193 (622)
.+....+.|.|.|||++..+ +++||++.++++++..++....|++|....+...+..|+|++.+.|.+..++
T Consensus 53 ~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~~ 125 (126)
T cd08678 53 ELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAEL 125 (126)
T ss_pred EeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccccC
Confidence 99766688999999999877 8999999999999998877889999975533223457999999999876644
No 24
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1.5e-18 Score=159.01 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=99.6
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+|+|++|++|++.|. .+.+||||+|.+++++. ||++++++.||+|||+|.|
T Consensus 1 ~L~V~vi~A~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f 53 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG--------------------------QGSSSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVF 53 (127)
T ss_pred CeEEEEEEeeCCCCCCC--------------------------CCCcCcEEEEEECCEEe-cceeEcCCCCCccceEEEE
Confidence 38999999999998774 45689999999999877 9999999999999999999
Q ss_pred ecCCCC----cEEEEEEEecCCc--CCeeeEeEEEeceeec-CCCeeeecccccCCCCCccccCceEEEEEEee
Q 007000 122 PVAHSA----AEVHFVVKDNDFV--GSQIMGAVGIPVEKLC-SGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (622)
Q Consensus 122 ~v~~~~----~~L~l~V~D~d~~--~dd~IG~~~i~L~~l~-~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~ 188 (622)
.+.+.. ..|+|+|||.+.. ++++||++.++++++. .+.....||+|..+ +...+..|+++|.+.++
T Consensus 54 ~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 54 NVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEc
Confidence 986532 5799999998877 4789999999999998 56777899999643 32223568999998875
No 25
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=3e-18 Score=155.56 Aligned_cols=120 Identities=24% Similarity=0.365 Sum_probs=100.0
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeecCCCCCeeeeEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~-~~~~kT~vi~~t~nPvWNE~f 119 (622)
|.|+|+|++|++|+..+.. .+.+||||+|++++ ...+||++++++.||+|||+|
T Consensus 2 g~l~v~v~~a~~L~~~~~~-------------------------~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~ 56 (124)
T cd04044 2 GVLAVTIKSARGLKGSDII-------------------------GGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETK 56 (124)
T ss_pred eEEEEEEEcccCCCccccc-------------------------CCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEE
Confidence 7899999999999965531 35689999999988 455699999999999999999
Q ss_pred EEecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeee-cccccCCCCCccccCceEEEEEEeec
Q 007000 120 NVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEG-AFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 120 ~~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~-W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
.|.+....+.|.|+|||.+..+ +++||++.++|.++..+...+. |..+ ...++ ..|+|+++++|.|
T Consensus 57 ~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~-~~~~k---~~G~i~~~l~~~p 124 (124)
T cd04044 57 YILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL-LRNGK---PVGELNYDLRFFP 124 (124)
T ss_pred EEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh-hcCCc---cceEEEEEEEeCC
Confidence 9998865689999999998876 8899999999999997766654 4455 34554 4589999999986
No 26
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=4.5e-18 Score=153.53 Aligned_cols=117 Identities=22% Similarity=0.404 Sum_probs=99.7
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|.|+|+|++|++|+.++. .+.+||||+|++++... +|++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~~~--------------------------~~~~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~ 53 (119)
T cd08377 1 GFLQVKVIRASGLAAADI--------------------------GGKSDPFCVLELVNARL-QTHTIYKTLNPEWNKIFT 53 (119)
T ss_pred CEEEEEEEeeeCCCCCCC--------------------------CCCCCcEEEEEECCEee-ecceecCCcCCccCcEEE
Confidence 689999999999998775 35689999999988765 999999999999999999
Q ss_pred EecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 121 ~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
|++.+..+.|.|+|||++..+ +++||++.+++.++..+. ..|++|....+.. +..|+|.+.++|
T Consensus 54 ~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 54 FPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred EEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 998766688999999998865 899999999999987554 5799997654332 356899999886
No 27
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=5.5e-18 Score=152.42 Aligned_cols=113 Identities=24% Similarity=0.343 Sum_probs=98.0
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
+|+|+|++|++|+.+|. .+.+||||++++++++. ||++++++.||+|||+|.|
T Consensus 1 ~~~V~v~~a~~L~~~~~--------------------------~~~~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f 53 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD--------------------------NGLSDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDL 53 (116)
T ss_pred CEEEEEEEEECCCCCCC--------------------------CCCCCcEEEEEECCEeE-ecccccCCCCCceeEEEEE
Confidence 47999999999998775 45689999999988776 9999999999999999999
Q ss_pred ecCCC-CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEee
Q 007000 122 PVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (622)
Q Consensus 122 ~v~~~-~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~ 188 (622)
.+... .+.|.|+|||++..+ +++||++.++|+++..+...+.|++|... .|++++.+.|.
T Consensus 54 ~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 54 HLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 98765 578999999999876 89999999999999988888999999533 26788877764
No 28
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.77 E-value=3.8e-18 Score=154.22 Aligned_cols=120 Identities=25% Similarity=0.365 Sum_probs=99.0
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|+|+|+|++|++|+.+|.... +...+.+||||+|+++++.. ||++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~--------------------~~~~g~~dPyv~v~~~~~~~-kT~~~~~t~~P~W~e~f~ 59 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVG--------------------GLVKGKSDPYVIVRVGAQTF-KSKVIKENLNPKWNEVYE 59 (121)
T ss_pred CeEEEEEEEccCCcccccccc--------------------cCCCCCcCCEEEEEECCEeE-EccccCCCCCCcccceEE
Confidence 679999999999998774210 00136789999999998655 999999999999999999
Q ss_pred EecCC-CCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 121 VPVAH-SAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 121 ~~v~~-~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
|.+.. ..+.|+|+|+|++..++++||++.++|+++..+...+.|++|.+. ..|++++.++|
T Consensus 60 ~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 60 AVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 99865 347999999999877788999999999999877778899999542 23788888775
No 29
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=3.7e-18 Score=155.21 Aligned_cols=113 Identities=20% Similarity=0.303 Sum_probs=95.9
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+|+|++|++|+.+ ++||||+|.+++.+. ||++++++.||+|||+|.|
T Consensus 1 ~L~V~Vi~a~~L~~~------------------------------~~Dpyv~v~l~~~~~-kT~v~~~t~nP~Wne~F~f 49 (121)
T cd08378 1 YLYVRVVKARGLPAN------------------------------SNDPVVEVKLGNYKG-STKAIERTSNPEWNQVFAF 49 (121)
T ss_pred CEEEEEEEecCCCcc------------------------------cCCCEEEEEECCccc-cccccCCCCCCccceEEEE
Confidence 389999999999864 279999999988655 9999999999999999999
Q ss_pred ecCCC-CcEEEEEEEecCCcCCeeeEeEEEeceeecCC-----CeeeecccccCCCCCccccCceEEEEEEe
Q 007000 122 PVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSG-----DKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 122 ~v~~~-~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g-----~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
.+... ...|.|+|||++..++++||++.++|+++... .....||+|....+. +..|+|+|.++|
T Consensus 50 ~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~ 119 (121)
T cd08378 50 SKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWF 119 (121)
T ss_pred EcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEe
Confidence 98764 47899999999987889999999999998742 235689999776542 466899999987
No 30
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.76 E-value=6.3e-18 Score=152.98 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=94.5
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeeeEEE
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|+|+|++|++|+..+. .+++||||+|.+.+ ....||++++++.||+|||+|.
T Consensus 2 L~V~vi~a~~L~~~~~--------------------------~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~ 55 (119)
T cd04036 2 LTVRVLRATNITKGDL--------------------------LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFE 55 (119)
T ss_pred eEEEEEEeeCCCccCC--------------------------CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEE
Confidence 7899999999998764 35689999999963 3345999999999999999999
Q ss_pred EecCCCC-cEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 121 VPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 121 ~~v~~~~-~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
|.+.... ..|.|+|||++..++++||++.++++++..|...+.|++|..+ +.|++++.+.+
T Consensus 56 f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~ 117 (119)
T cd04036 56 FRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLL 117 (119)
T ss_pred EEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEe
Confidence 9986543 6799999999987888999999999999988889999999532 23667766654
No 31
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.76 E-value=8.1e-18 Score=152.92 Aligned_cols=117 Identities=26% Similarity=0.428 Sum_probs=97.5
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|.|+|++|++|+++|. .|++||||+|.++++..+||+++++++||+|||+|.|+
T Consensus 2 l~v~vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~ 55 (121)
T cd04054 2 LYIRIVEGKNLPAKDI--------------------------TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVH 55 (121)
T ss_pred EEEEEEEeeCCcCCCC--------------------------CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEe
Confidence 7899999999998875 46689999999998777899999999999999999999
Q ss_pred cCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCC-CeeeecccccCCCCCccccCceEEEEEE
Q 007000 123 VAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG-DKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (622)
Q Consensus 123 v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g-~~~~~W~~L~~~~g~~~k~~G~I~L~l~ 186 (622)
+....+.|.|.|||++..+ +++||++.++++++..+ ...+.|++|....+. ....|++++.++
T Consensus 56 ~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 56 LPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred eCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 9766689999999999887 89999999999888753 347899999643221 124578887764
No 32
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.76 E-value=4.7e-18 Score=154.02 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=84.5
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC-----CE-EEeeeeeecCCCCCeee
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC-----GA-VIGRTFVISNSESPVWM 116 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~-----~~-~~~kT~vi~~t~nPvWN 116 (622)
|+|+|++|++|+.++ .|.+||||+|++- .+ +..||+++.+++||+||
T Consensus 2 L~V~Vi~A~~L~~~d---------------------------~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwN 54 (120)
T cd08395 2 VTVKVVAANDLKWQT---------------------------TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYN 54 (120)
T ss_pred EEEEEEECcCCCccc---------------------------CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccC
Confidence 899999999998765 2568999999983 22 23489999999999999
Q ss_pred eEEEEecCCC----CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccC
Q 007000 117 QHFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (622)
Q Consensus 117 E~f~~~v~~~----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~ 169 (622)
|+|.|.+... ...|.|.|+|++..+ +++||++.++|+++..++..+.|++|..
T Consensus 55 E~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 55 ETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9999998642 256899999999776 8899999999999998888899999953
No 33
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.76 E-value=9.7e-18 Score=152.59 Aligned_cols=117 Identities=29% Similarity=0.402 Sum_probs=96.8
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+|+|++|++|+.+|. .+.+||||+|.+++... +|++++++.||+|||+|.|
T Consensus 1 ~L~v~vi~a~~L~~~d~--------------------------~~~~DPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f 53 (123)
T cd04025 1 RLRCHVLEARDLAPKDR--------------------------NGTSDPFVRVFYNGQTL-ETSVVKKSCYPRWNEVFEF 53 (123)
T ss_pred CEEEEEEEeeCCCCCCC--------------------------CCCcCceEEEEECCEEE-eceeecCCCCCccCcEEEE
Confidence 38999999999998775 45689999999988776 9999999999999999999
Q ss_pred ecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCC---ccccCceEEEEE
Q 007000 122 PVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK---PCKAGAVLSLSI 185 (622)
Q Consensus 122 ~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~---~~k~~G~I~L~l 185 (622)
.+.... ..|.|+|||++..+ +++||.+.++|+++..+...+.|+.|...... ..+..|.|++.+
T Consensus 54 ~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 54 ELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 987653 78999999999877 78999999999999877777899999753211 123456777764
No 34
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.76 E-value=2.3e-18 Score=160.69 Aligned_cols=96 Identities=29% Similarity=0.477 Sum_probs=88.0
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~ 118 (622)
+.|.|+|+|++|.+|...|+ .+++||||++.+++++. ||+++.+++||+|||.
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~--------------------------~~sSDPyVVl~lg~q~l-kT~~v~~n~NPeWNe~ 56 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDF--------------------------LGSSDPYVVLELGNQKL-KTRVVYKNLNPEWNEE 56 (168)
T ss_pred cceEEEEEEEeecCeeeecc--------------------------ccCCCCeEEEEECCeee-eeeeecCCCCCcccce
Confidence 45999999999999998886 35699999999999999 9999999999999999
Q ss_pred EEEecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCee
Q 007000 119 FNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKI 161 (622)
Q Consensus 119 f~~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~ 161 (622)
|+|.+.+....|+++|||+|.++ ||+||.++|+|..+......
T Consensus 57 ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 57 LTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred EEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 99999999999999999999998 89999999999988865433
No 35
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.76 E-value=3.7e-18 Score=153.30 Aligned_cols=105 Identities=10% Similarity=0.157 Sum_probs=86.8
Q ss_pred ceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeecCC
Q 007000 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---AVIGRTFVISNS 110 (622)
Q Consensus 34 ~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~---~~~~kT~vi~~t 110 (622)
|.-....+.|+|+|++|++|+ . .|.+||||+|++.. ....+|++.++|
T Consensus 7 L~Y~~~~~~L~V~vikA~~L~-~----------------------------~g~sDPYVKv~L~~~~k~~k~kT~v~rkt 57 (118)
T cd08677 7 LSYDKQKAELHVNILEAENIS-V----------------------------DAGCECYISGCVSVSEGQKEAQTALKKLA 57 (118)
T ss_pred EEEcCcCCEEEEEEEEecCCC-C----------------------------CCCCCeEEEEEEcCCcCccEEEcceecCC
Confidence 444455689999999999998 2 23489999999952 233499999999
Q ss_pred CCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccc
Q 007000 111 ESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 111 ~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
+||+|||+|.|.++.. ...|.|+|+|+|.++ +++||++.++++++..+...++|..|
T Consensus 58 lnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 58 LHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999998653 267999999999987 89999999999988767777889765
No 36
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.75 E-value=1.3e-17 Score=153.76 Aligned_cols=126 Identities=21% Similarity=0.347 Sum_probs=101.4
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~ 118 (622)
..|.|+|+|++|++|+..|..... -++ ....+.+||||+|.++++..++|++++++.||+|||+
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~---~~~-------------~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~ 65 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRH---AVP-------------KKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEE 65 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhh---ccc-------------ccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCccee
Confidence 358999999999999987751100 000 0013678999999999988789999999999999999
Q ss_pred EEEecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecC--CCeeeecccccCCCCCccccCceEEEEEEeec
Q 007000 119 FNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS--GDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 119 f~~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~--g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
|.|++. ....|.|.|+|++..+ +++||++.++|+++.. +...+.|++|. + .|.+++.+++..
T Consensus 66 f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-~-------~G~l~l~~~~~~ 130 (132)
T cd04014 66 FTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-P-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-C-------CcEEEEEEEEec
Confidence 999997 4478999999988776 7899999999999987 56679999994 2 268999988864
No 37
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=1.3e-17 Score=152.38 Aligned_cols=122 Identities=22% Similarity=0.360 Sum_probs=99.1
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|+|+|+|++|++|+..+.. ..+.+||||+|.+++++. ||++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~------------------------~~~~~dPyv~v~~~~~~~-kT~~~~~t~~P~Wne~f~ 55 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS------------------------GKGKSDPYAILSVGAQRF-KTQTIPNTLNPKWNYWCE 55 (128)
T ss_pred CEEEEEEEEeeCCCcccCC------------------------CCCCcCCeEEEEECCEEE-ecceecCCcCCccCCcEE
Confidence 6899999999999977640 035689999999988776 999999999999999999
Q ss_pred EecCC-CCcEEEEEEEecCCcC-CeeeEeEEEeceeecC---CCeeeecccccCCC-CCccccCceEEEEEEe
Q 007000 121 VPVAH-SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILNSS-RKPCKAGAVLSLSIQY 187 (622)
Q Consensus 121 ~~v~~-~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~---g~~~~~W~~L~~~~-g~~~k~~G~I~L~l~f 187 (622)
|++.+ ..+.|.|+|||++..+ +++||++.++|.++.. ......|++|.+.. ++.....|+|+|.+.|
T Consensus 56 ~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 56 FPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99976 3589999999999885 8899999999999873 34467899997552 2222356889888764
No 38
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=1.4e-17 Score=155.86 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=94.9
Q ss_pred CcccCccee--EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EE
Q 007000 28 ETHQGSLKV--LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VI 101 (622)
Q Consensus 28 ~~~~~~~~~--~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~--~~ 101 (622)
....|++++ ....|.|.|+|++|+||+..+. ..|.+||||++++. ++ ..
T Consensus 14 ~~~~G~l~lsl~y~~~~L~V~Vi~ArnL~~~~~-------------------------~~g~sDPYVKv~Llp~~~~~~k 68 (146)
T cd04028 14 SPSMGDIQLGLYDKKGQLEVEVIRARGLVQKPG-------------------------SKVLPAPYVKVYLLEGKKCIAK 68 (146)
T ss_pred CCCcceEEEEEEeCCCEEEEEEEEeeCCCcccC-------------------------CCCCcCCeEEEEEECCCccccc
Confidence 334555555 3456899999999999987642 14668999999993 32 23
Q ss_pred eeeeeecCCCCCeeeeEEEEecCCCCcEEEEEEE-ecCCcC-CeeeEeEEEeceeecCCCeeeecccccCC
Q 007000 102 GRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVK-DNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (622)
Q Consensus 102 ~kT~vi~~t~nPvWNE~f~~~v~~~~~~L~l~V~-D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~ 170 (622)
.||+++++++||+|||+|.|++......|.|+|| |++..+ +++||++.|+|+++..+.....||+|...
T Consensus 69 ~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 69 KKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred eeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 4999999999999999999999855579999999 577665 88999999999999777777899999754
No 39
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=2.1e-17 Score=152.31 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=98.5
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeecCCCCCee
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA------VIGRTFVISNSESPVW 115 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~------~~~kT~vi~~t~nPvW 115 (622)
.|+|+|++|++|+.+|. .+.+||||+|.+.+. ...||++++++.||+|
T Consensus 1 ~L~v~Vi~a~~L~~~d~--------------------------~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~W 54 (133)
T cd04033 1 ILRVKVLAGIDLAKKDI--------------------------FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKW 54 (133)
T ss_pred CEEEEEEEeECCCcccC--------------------------CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcE
Confidence 38999999999998875 456899999999654 2349999999999999
Q ss_pred eeEEEEecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCC------eeeecccccCCCCCccccCceEEEEEEee
Q 007000 116 MQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD------KIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (622)
Q Consensus 116 NE~f~~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~------~~~~W~~L~~~~g~~~k~~G~I~L~l~f~ 188 (622)
||+|.|.+......|.|+|||++..+ +++||++.+++.++..+. ....||+|....+. .+..|+|+|.+.|.
T Consensus 55 ne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~~ 133 (133)
T cd04033 55 NEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAYL 133 (133)
T ss_pred eeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEeeC
Confidence 99999999766678999999999887 889999999999988542 35689999743222 24578999999883
No 40
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.74 E-value=1.2e-17 Score=152.05 Aligned_cols=101 Identities=26% Similarity=0.390 Sum_probs=86.4
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPvW 115 (622)
.+.|.|+|++|++|+.++ ++.+||||+|++.. ....||++++++.||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~---------------------------~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~w 64 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD---------------------------GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTF 64 (122)
T ss_pred CCEEEEEEEEeeCCCCCC---------------------------CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCc
Confidence 588999999999999776 24589999999952 22349999999999999
Q ss_pred eeEEEEec-CC---CCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccc
Q 007000 116 MQHFNVPV-AH---SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 116 NE~f~~~v-~~---~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
||+|.|++ +. ....|.|+|||++..+ +++||++.|+|+++..+...+.||+|
T Consensus 65 nE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 65 NEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99999987 32 2368999999999887 89999999999999987778899987
No 41
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=3.2e-17 Score=152.18 Aligned_cols=114 Identities=21% Similarity=0.328 Sum_probs=95.3
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|.|+|+|++|++|+.+|. .|.+||||++.++.+.. ||++++++.||+|||+|.
T Consensus 15 G~L~V~Vi~A~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~-kT~vi~~t~nP~Wne~f~ 67 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNS--------------------------NGKSDPYCEVSMGSQEH-KTKVVSDTLNPKWNSSMQ 67 (136)
T ss_pred EEEEEEEEEeeCCCCCCC--------------------------CCCcCcEEEEEECCEee-eccccCCCCCCccCceEE
Confidence 899999999999998774 45689999999988776 999999999999999999
Q ss_pred EecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecC-----CCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS-----GDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 121 ~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~-----g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
|.+.+.. +.|.|+|||++..+ +++||++.++|.++.. ......|.+|. + +..|+++|.+.|
T Consensus 68 f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~---~~~g~i~l~~~~ 135 (136)
T cd08375 68 FFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---E---VPTGEVVVKLDL 135 (136)
T ss_pred EEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c---ccceeEEEEEEe
Confidence 9987644 68999999999877 8899999999998885 22344566662 2 244789998876
No 42
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.74 E-value=1.4e-17 Score=147.50 Aligned_cols=98 Identities=26% Similarity=0.506 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|.|+|++|++|+..+. .+.+||||+|+++++.. ||++++++.||+|||+|.|.
T Consensus 2 L~V~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~ 54 (105)
T cd04050 2 LFVYLDSAKNLPLAKS--------------------------TKEPSPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFL 54 (105)
T ss_pred EEEEEeeecCCCCccc--------------------------CCCCCcEEEEEECCEEE-eCccccCCCCCcccceEEEE
Confidence 7899999999998764 46799999999998766 99999999999999999999
Q ss_pred cCCC-CcEEEEEEEecCCcCCeeeEeEEEeceeecCCC--eeeecccccC
Q 007000 123 VAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGD--KIEGAFPILN 169 (622)
Q Consensus 123 v~~~-~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~--~~~~W~~L~~ 169 (622)
+.+. .+.|.|+|+|.+. +++||++.++|.++..++ ..+.||+|.+
T Consensus 55 v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 55 VRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred eCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9874 4789999999886 789999999999988543 6789999954
No 43
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.73 E-value=1.6e-17 Score=151.31 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=90.1
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEeeeeeecCCCCCeee
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIGRTFVISNSESPVWM 116 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l--~~~~~~kT~vi~~t~nPvWN 116 (622)
..|.|.|+|++|++|+.+|. .+.+||||+|.+ ++...+||++++++.||+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDF--------------------------SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCC--------------------------CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcc
Confidence 45899999999999998775 456899999999 33445699999999999999
Q ss_pred eEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 117 E~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
|+|.|.+... ...|.|+|||++..+ +++||++.++|+++..+...+.|++|+
T Consensus 68 e~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 68 ESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred cEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999998653 358999999999886 889999999999998777889999985
No 44
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=1.7e-17 Score=148.21 Aligned_cols=101 Identities=30% Similarity=0.456 Sum_probs=87.5
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCee-eeEEEE
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVW-MQHFNV 121 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvW-NE~f~~ 121 (622)
|+|+|++|++|+.++.. .+.+||||+|++++++. ||++++++.||+| ||+|.|
T Consensus 1 l~V~v~~a~~L~~~d~~-------------------------~~~~Dpyv~v~~~~~~~-kT~v~~~~~nP~W~ne~f~f 54 (110)
T cd08688 1 LKVRVVAARDLPVMDRS-------------------------SDLTDAFVEVKFGSTTY-KTDVVKKSLNPVWNSEWFRF 54 (110)
T ss_pred CEEEEEEEECCCccccC-------------------------CCCCCceEEEEECCeeE-ecceecCCCCCcccCcEEEE
Confidence 68999999999987631 45689999999998655 9999999999999 999999
Q ss_pred ecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecC---CCeeeecccccC
Q 007000 122 PVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILN 169 (622)
Q Consensus 122 ~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~---g~~~~~W~~L~~ 169 (622)
.+... .+.|.|+|||++..+ +++||++.+++.++.. +...+.||+|++
T Consensus 55 ~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 55 EVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 98653 368999999999887 7899999999999986 456889999975
No 45
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.73 E-value=2.4e-17 Score=150.76 Aligned_cols=109 Identities=26% Similarity=0.396 Sum_probs=90.5
Q ss_pred ceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecC
Q 007000 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISN 109 (622)
Q Consensus 34 ~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~ 109 (622)
++.....+.|.|+|++|+||+..+.. .+.+||||+|.+.. ....||+++++
T Consensus 8 l~y~~~~~~L~V~Vi~a~~L~~~~~~-------------------------~~~~DpyVkv~l~p~~~~~~~~kT~v~~~ 62 (125)
T cd04029 8 LSYDYKTQSLNVHVKECRNLAYGDEA-------------------------KKRSNPYVKTYLLPDKSRQSKRKTSIKRN 62 (125)
T ss_pred EEEECCCCeEEEEEEEecCCCccCCC-------------------------CCCCCcEEEEEEEcCCccccceEeeeeeC
Confidence 34444568999999999999977631 35689999999942 22349999999
Q ss_pred CCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccc
Q 007000 110 SESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 110 t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
+.||+|||+|.|++... ...|.|+|||++..+ +++||++.++|.++......+.|++|
T Consensus 63 t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 63 TTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999999999998652 357999999999877 88999999999999888888999998
No 46
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=5.6e-17 Score=148.49 Aligned_cols=106 Identities=32% Similarity=0.566 Sum_probs=91.9
Q ss_pred CCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCe
Q 007000 85 KITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK 160 (622)
Q Consensus 85 ~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~ 160 (622)
.+++||||+|.+++.+. ||++++++.||+|||+|.|++... .+.|.|+|||++..+ +++||++.++|+++..+..
T Consensus 12 ~g~~Dpyv~v~~~~~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 90 (127)
T cd08373 12 KGKGDRIAKVTFRGVKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL 90 (127)
T ss_pred CCCCCCEEEEEECCEee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCc
Confidence 35689999999988776 999999999999999999998653 478999999999886 7899999999999998888
Q ss_pred eeecccccCCCCCccccCceEEEEEEeeccccc
Q 007000 161 IEGAFPILNSSRKPCKAGAVLSLSIQYTPVENM 193 (622)
Q Consensus 161 ~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~~~l 193 (622)
...|++|.+..+++ ..|++++.++|.|....
T Consensus 91 ~~~~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 91 LEVTEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred eEEEEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 89999998766653 35799999999987643
No 47
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.72 E-value=1.6e-17 Score=151.98 Aligned_cols=109 Identities=19% Similarity=0.242 Sum_probs=89.5
Q ss_pred eeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCC
Q 007000 35 KVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNS 110 (622)
Q Consensus 35 ~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t 110 (622)
+.....+.|.|+|++|+||+.+|.. .|.+||||+|.+.. ....||++++++
T Consensus 9 ~y~~~~~~L~V~vi~a~~L~~~d~~-------------------------~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t 63 (125)
T cd08393 9 DYDPKLRELHVHVIQCQDLAAADPK-------------------------KQRSDPYVKTYLLPDKSNRGKRKTSVKKKT 63 (125)
T ss_pred EEECCCCEEEEEEEEeCCCCCcCCC-------------------------CCCCCcEEEEEEEcCCCccccccCccCcCC
Confidence 3333457899999999999987741 26689999999942 223499999999
Q ss_pred CCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 111 ESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 111 ~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
.||+|||+|.|++... ...|.|+|||++..+ +++||++.++|.++..+.....||+|+
T Consensus 64 ~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 64 LNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999999999998642 268999999999876 889999999999998777778899983
No 48
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=9.4e-17 Score=146.97 Aligned_cols=121 Identities=16% Similarity=0.242 Sum_probs=99.1
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEE
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f 119 (622)
+.+|+|+|++|++|+..|. .|.+||||+|.+++++. ||++++++.||+|||+|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~--------------------------~g~~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f 54 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS--------------------------GGGADPYVIIKCEGESV-RSPVQKDTLSPEFDTQA 54 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC--------------------------CCCcCccEEEEECCEEE-EeCccCCCCCCcccceE
Confidence 4789999999999998774 45699999999998877 99999999999999999
Q ss_pred EEecCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCC-CccccCceEEEEEEeec
Q 007000 120 NVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSR-KPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 120 ~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g-~~~k~~G~I~L~l~f~p 189 (622)
.|.+.+....|.|+|||++..++++||.+.+++.++.. ....|++|..... ...+..|+|.+.+...+
T Consensus 55 ~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 55 IFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99887777899999999998889999999999987643 3456778853211 11235689998887765
No 49
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.72 E-value=2.9e-17 Score=146.40 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=81.2
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|+|.|+|++|++|+..|...+ .++.+||||+|++++.+. ||+++++++||+|||+|.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~----------------------~~~~~DPYv~v~~~~~~~-kT~v~~~t~nPvWne~f~ 57 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR----------------------TGFDMDPFVIISFGRRVF-RTSWRRHTLNPVFNERLA 57 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC----------------------CCCccCceEEEEECCEeE-eeeeecCCCCCcccceEE
Confidence 789999999999998774211 134589999999988776 999999999999999999
Q ss_pred EecCCCC--cEEEEEEEecCCcC-CeeeEeEEEeceeecCCC
Q 007000 121 VPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD 159 (622)
Q Consensus 121 ~~v~~~~--~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~ 159 (622)
|++.+.. ..|.|.|||++..+ +++||++.++|++|..+.
T Consensus 58 f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 58 FEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 9885433 57899999999887 899999999999998653
No 50
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.72 E-value=4.2e-17 Score=147.96 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=85.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEE
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f 119 (622)
++.|.|+|++|++|+.++ ..||||+|++++++. +|+++++ .||+|||+|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~-----------------------------~~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F 49 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD-----------------------------KFNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDF 49 (127)
T ss_pred CceEEEEEEEeeCCCCCC-----------------------------CCCCeEEEEECCEEe-EeeECCC-CCCceeeEE
Confidence 368999999999997543 369999999999876 9999987 599999999
Q ss_pred EEecCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCee--eeccccc
Q 007000 120 NVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKI--EGAFPIL 168 (622)
Q Consensus 120 ~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~--~~W~~L~ 168 (622)
.|.+....+.|.|.|||++.+.||+||++.|+|+++..+... ..||+|.
T Consensus 50 ~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 50 MFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 999987777799999999988899999999999999865444 7899996
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.71 E-value=5.4e-17 Score=147.81 Aligned_cols=104 Identities=29% Similarity=0.338 Sum_probs=89.4
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeee
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWM 116 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~~~~kT~vi~~t~nPvWN 116 (622)
..+.|+|+|++|++|+.++. .+.+||||+|.+.. .+..||++++++.||+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~--------------------------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn 67 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDM--------------------------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 67 (124)
T ss_pred CCCEEEEEEEEeeCCCCccC--------------------------CCCCCCEEEEEEEcCCCCceecccCcCCCCCcee
Confidence 45899999999999998774 45689999999942 334599999999999999
Q ss_pred eEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 117 E~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
|+|.|.+... ...|.|+|||++..+ +++||++.++|+++..+...++|++|.
T Consensus 68 e~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 68 ETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999998642 358999999999876 789999999999998888889999984
No 52
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.70 E-value=4.7e-17 Score=147.56 Aligned_cols=102 Identities=21% Similarity=0.336 Sum_probs=86.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCe
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPV 114 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPv 114 (622)
.++.|.|+|++|+||++++ .|.+||||+|++.. ....||++++++.||+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~---------------------------~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~ 62 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN---------------------------SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPL 62 (119)
T ss_pred cCCEEEEEEEEEECCCCCC---------------------------CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCc
Confidence 5688999999999999765 34689999999953 2344899999999999
Q ss_pred eeeEEEEecCCCC--cEEEEEEEecCCcC--CeeeEeEEEeceeecCCCeeeecccc
Q 007000 115 WMQHFNVPVAHSA--AEVHFVVKDNDFVG--SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 115 WNE~f~~~v~~~~--~~L~l~V~D~d~~~--dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
|||+|.|++.... ..|.|+|||.+... +++||.+.|+|.++..+...+.||.|
T Consensus 63 ~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 63 FHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 9999999986532 56889999988764 68999999999999877778999976
No 53
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=8.7e-17 Score=146.02 Aligned_cols=104 Identities=33% Similarity=0.543 Sum_probs=91.9
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|.|+|+|++|++|+..+. .+.+||||+|+++++..++|++++++.||+|||+|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~ 54 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG--------------------------VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLY 54 (120)
T ss_pred CeEEEEEEeeECCCCccC--------------------------CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEE
Confidence 689999999999998774 456899999999887767999999999999999999
Q ss_pred EecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCC
Q 007000 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (622)
Q Consensus 121 ~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~ 171 (622)
|++....+.|.|+|+|++..+ +++||++.+++.++..+ ..+.||.|++..
T Consensus 55 ~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 55 VPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 998777789999999999887 78999999999999866 568899987654
No 54
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.70 E-value=1.1e-16 Score=150.48 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=83.7
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCeeee
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPVWMQ 117 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~-----~~~~kT~vi~~t~nPvWNE 117 (622)
|+|+|++|++|+. . +|.+||||+|.+.. ++. ||++++++.||+|||
T Consensus 2 L~V~Vi~ArnL~~--~--------------------------~g~sDPYV~V~l~~~~~k~~~~-kT~v~~~t~nP~wNE 52 (148)
T cd04010 2 LSVRVIECSDLAL--K--------------------------NGTCDPYASVTLIYSNKKQDTK-RTKVKKKTNNPQFDE 52 (148)
T ss_pred EEEEEEeCcCCCC--C--------------------------CCCCCceEEEEEeCCcccCccc-CCccEeCCCCCccce
Confidence 7999999999985 1 46789999999965 334 999999999999999
Q ss_pred EEEEecC---------------CCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCC-CeeeecccccCCC
Q 007000 118 HFNVPVA---------------HSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG-DKIEGAFPILNSS 171 (622)
Q Consensus 118 ~f~~~v~---------------~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g-~~~~~W~~L~~~~ 171 (622)
+|.|.+. +.. ..|.|.|||.+..+ +++||++.|+|+++..+ .....||+|..+.
T Consensus 53 ~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 53 AFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 9999884 112 56889999998875 88999999999999876 5678999997543
No 55
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=9e-17 Score=151.39 Aligned_cols=116 Identities=25% Similarity=0.332 Sum_probs=88.3
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|.|+|++|++|+.+|.... .+.++ +...+..+.+||||+|.+++++. ||++++++.||+|||+|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~----------~~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f 67 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK----------AFLGEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVF 67 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee----------ccccCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEE
Confidence 37899999999999985210 00000 00112356789999999999887 9999999999999999999
Q ss_pred ecCC--CCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCe-------eeecccccCC
Q 007000 122 PVAH--SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-------IEGAFPILNS 170 (622)
Q Consensus 122 ~v~~--~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~-------~~~W~~L~~~ 170 (622)
++.. ..+.|.|+|||+|..+ +++||++.++|+++..... ...|+.|+..
T Consensus 68 ~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 68 PEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 8643 3478999999999885 8999999999998875432 2466666543
No 56
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.70 E-value=7.9e-17 Score=147.02 Aligned_cols=106 Identities=19% Similarity=0.269 Sum_probs=87.6
Q ss_pred eEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C---EEEeeeeeecCC
Q 007000 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G---AVIGRTFVISNS 110 (622)
Q Consensus 36 ~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~---~~~~kT~vi~~t 110 (622)
-....+.|.|+|++|+||+.++. ++.+||||++++- . ....||++++++
T Consensus 9 Y~~~~~~L~V~V~~arnL~~~~~--------------------------~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t 62 (124)
T cd08680 9 YDSGDSSLVISVEQLRNLSALSI--------------------------PENSKVYVRVALLPCSSSTSCLFRTKALEDQ 62 (124)
T ss_pred ECCCCCEEEEEEeEecCCccccc--------------------------CCCCCeEEEEEEccCCCCCCceEEcCccCCC
Confidence 33445789999999999998763 5668999999993 2 224599999999
Q ss_pred CCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecC-CCeeeecccc
Q 007000 111 ESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS-GDKIEGAFPI 167 (622)
Q Consensus 111 ~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~-g~~~~~W~~L 167 (622)
.||+|||+|.|+++.. ...|.|+|||.+..+ +++||.+.|+|+++.. +.....||+|
T Consensus 63 ~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 63 DKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999999998653 368999999999876 8999999999999964 4457889986
No 57
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.69 E-value=9.2e-17 Score=143.70 Aligned_cols=99 Identities=26% Similarity=0.352 Sum_probs=83.9
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCC-CCCCcEEEEEECC--EEEeeeeeecCCCCCeeee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDK-ITSDPYVTVSICG--AVIGRTFVISNSESPVWMQ 117 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~DPYv~V~l~~--~~~~kT~vi~~t~nPvWNE 117 (622)
|+|+|+|++|++|+.+|. . +++||||+|.+.. +...||++++++.||+|||
T Consensus 1 G~L~V~v~~a~~L~~~d~--------------------------~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne 54 (111)
T cd04041 1 GVLVVTIHRATDLPKADF--------------------------GTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEE 54 (111)
T ss_pred CEEEEEEEEeeCCCcccC--------------------------CCCCCCccEEEEEccCCCccEeeeeECCCCCCccce
Confidence 689999999999998775 3 5689999999943 3345999999999999999
Q ss_pred EEEEecCCC----CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 118 HFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 118 ~f~~~v~~~----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
+|.|.+... .+.|.|+|||++..+ +++||++.+++++|.. ...|+++.
T Consensus 55 ~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 55 TWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred eEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 999987543 368999999999887 8999999999999973 35798884
No 58
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.69 E-value=1.7e-16 Score=144.42 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=84.7
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCC
Q 007000 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESP 113 (622)
Q Consensus 38 ~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nP 113 (622)
...+.|+|+|++|++|+.++. .+.+||||+|.+.. ....||++++++.||
T Consensus 13 ~~~~~L~V~vi~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP 66 (125)
T cd04031 13 KVTSQLIVTVLQARDLPPRDD--------------------------GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNP 66 (125)
T ss_pred CCCCEEEEEEEEecCCCCcCC--------------------------CCCCCCEEEEEEccCCCccccccccccCCCCCC
Confidence 345789999999999998764 45689999999964 234599999999999
Q ss_pred eeeeEEEEecCC----CCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 114 VWMQHFNVPVAH----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 114 vWNE~f~~~v~~----~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
+|||+|.|++.. ....|.|+|||++..+ +++||++.++|++.. ....+.||+|.
T Consensus 67 ~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 67 EWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred ccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 999999998643 2368999999999876 789999999998833 23346899983
No 59
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=2.7e-16 Score=143.28 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=91.2
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|+|+|++|++|+.++. .+.+||||+|.+++....||++++++.||+|||+|.|+
T Consensus 2 l~v~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~ 55 (123)
T cd08382 2 VRLTVLCADGLAKRDL--------------------------FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLT 55 (123)
T ss_pred eEEEEEEecCCCccCC--------------------------CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEE
Confidence 7999999999998775 35689999999975445599999999999999999999
Q ss_pred cCCCCcEEEEEEEecCCcC---CeeeEeEEEeceeecCCC-eeeecccccCCCCC-ccccCceEEEEE
Q 007000 123 VAHSAAEVHFVVKDNDFVG---SQIMGAVGIPVEKLCSGD-KIEGAFPILNSSRK-PCKAGAVLSLSI 185 (622)
Q Consensus 123 v~~~~~~L~l~V~D~d~~~---dd~IG~~~i~L~~l~~g~-~~~~W~~L~~~~g~-~~k~~G~I~L~l 185 (622)
+.. .+.|.|+|||++..+ +++||++.++++++.... ....|++|...... .....|++.+.+
T Consensus 56 ~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 56 VGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 975 679999999998775 369999999999987543 34679999644321 112346666544
No 60
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.68 E-value=1.4e-16 Score=146.33 Aligned_cols=105 Identities=21% Similarity=0.258 Sum_probs=86.5
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCC
Q 007000 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESP 113 (622)
Q Consensus 38 ~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nP 113 (622)
-..+.|.|+|++|+||+.+|.. .|.+||||+|.+.. ....||++++++.||
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~-------------------------~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP 66 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEK-------------------------KKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP 66 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCC-------------------------CCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence 3457899999999999987641 26789999999942 223499999999999
Q ss_pred eeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecC---CCeeeecccc
Q 007000 114 VWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPI 167 (622)
Q Consensus 114 vWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~---g~~~~~W~~L 167 (622)
+|||+|.|+++.. ...|.|+|||.+..+ +++||++.|+|+++.. +.....||+|
T Consensus 67 vfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 67 VFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred ccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999998653 368999999999876 8899999999998863 3467889998
No 61
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.68 E-value=2e-16 Score=144.47 Aligned_cols=108 Identities=21% Similarity=0.327 Sum_probs=89.8
Q ss_pred ceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecC
Q 007000 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISN 109 (622)
Q Consensus 34 ~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~ 109 (622)
|+.....+.|+|+|++|+||+.++. .+.+||||+|.+.. ....||+++++
T Consensus 9 l~y~~~~~~L~V~vi~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~ 62 (127)
T cd04030 9 IRYSSQRQKLIVTVHKCRNLPPCDS--------------------------SDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62 (127)
T ss_pred EEEeCCCCEEEEEEEEEECCCCccC--------------------------CCCCCceEEEEEEcCCCCCceEecccccC
Confidence 3444445789999999999998874 45689999999952 23459999999
Q ss_pred CCCCeeeeEEEEecCCC---CcEEEEEEEecCCc---CCeeeEeEEEeceeecCCCeeeecccc
Q 007000 110 SESPVWMQHFNVPVAHS---AAEVHFVVKDNDFV---GSQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 110 t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~---~dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
+.||+|||+|.|.+... ...|.++|+|.+.. .+++||++.++|.++..+...+.||+|
T Consensus 63 ~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 63 NLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 99999999999998643 36899999998864 388999999999999877778999998
No 62
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.68 E-value=3.2e-16 Score=143.61 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=92.1
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+|+|++|++|+.+|. .+.+||||+|.++++.. +|++++++.||+|||+|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~--------------------------~g~~DPyv~v~~~~~~~-kT~~v~~t~~P~Wne~f~f 54 (127)
T cd04027 2 KISITVVCAQGLIAKDK--------------------------TGTSDPYVTVQVGKTKK-RTKTIPQNLNPVWNEKFHF 54 (127)
T ss_pred eEEEEEEECcCCcCCCC--------------------------CCCcCcEEEEEECCEee-ecceecCCCCCccceEEEE
Confidence 58999999999998775 45689999999987665 9999999999999999999
Q ss_pred ecCCCCcEEEEEEEecCCc------------CCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEE
Q 007000 122 PVAHSAAEVHFVVKDNDFV------------GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLS 184 (622)
Q Consensus 122 ~v~~~~~~L~l~V~D~d~~------------~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~ 184 (622)
.+......|.|+|||+|.. .+++||++.+++.++.. ..+.|++|....++. ...|+|.|.
T Consensus 55 ~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~-~~~G~i~~~ 126 (127)
T cd04027 55 ECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKS-AVSGAIRLH 126 (127)
T ss_pred EecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCC-cEeEEEEEE
Confidence 9865567899999998842 37899999999988753 356899997554332 345777765
No 63
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.68 E-value=1.3e-16 Score=145.45 Aligned_cols=112 Identities=21% Similarity=0.277 Sum_probs=93.4
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeec-CCCCCeeeeEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVIS-NSESPVWMQHF 119 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~-~~~~kT~vi~-~t~nPvWNE~f 119 (622)
+|+|+|++|++|+..+. .+++||||+|++++ ++. +|+++. ++.||+|||+|
T Consensus 1 ~L~V~V~sA~~L~~~~~--------------------------~~~~dpYv~v~~~~~~~~-~T~~~~~~~~~P~Wne~f 53 (125)
T cd04051 1 TLEITIISAEDLKNVNL--------------------------FGKMKVYAVVWIDPSHKQ-STPVDRDGGTNPTWNETL 53 (125)
T ss_pred CEEEEEEEcccCCCCCc--------------------------ccCCceEEEEEECCCccc-ccccccCCCCCCCCCCEE
Confidence 48999999999998764 35689999999988 554 999976 58999999999
Q ss_pred EEecCCC-----CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCe-----eeecccccCCCCCccccCceEEE
Q 007000 120 NVPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-----IEGAFPILNSSRKPCKAGAVLSL 183 (622)
Q Consensus 120 ~~~v~~~-----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~-----~~~W~~L~~~~g~~~k~~G~I~L 183 (622)
.|.+... ...|.|+|+|++..+ +++||++.++|.++..+.. ...||+|..+.|+ ..|.+++
T Consensus 54 ~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~---~~G~~~~ 125 (125)
T cd04051 54 RFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK---PQGVLNF 125 (125)
T ss_pred EEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC---cCeEEeC
Confidence 9998766 578999999998865 8899999999999986544 3689999877775 4577764
No 64
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.68 E-value=5.4e-16 Score=143.65 Aligned_cols=118 Identities=25% Similarity=0.302 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+|+|++|++|+.+|. .|.+||||+|.+++++. ||++++++.||+|||+|.|
T Consensus 2 ~l~v~V~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~~~f 54 (135)
T cd04017 2 QLRAYIYQARDLLAADK--------------------------SGLSDPFARVSFLNQSQ-ETEVIKETLSPTWDQTLIF 54 (135)
T ss_pred EEEEEEEEeecCcCCCC--------------------------CCCCCCEEEEEECCeee-EeeeEcCCCCCccCcEEEE
Confidence 48999999999998875 46799999999988776 9999999999999999998
Q ss_pred ecCC----------CCcEEEEEEEecCCcC-CeeeEeEEE-eceeecC---CCeeeecccccCCCCCccccCceEEEEEE
Q 007000 122 PVAH----------SAAEVHFVVKDNDFVG-SQIMGAVGI-PVEKLCS---GDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (622)
Q Consensus 122 ~v~~----------~~~~L~l~V~D~d~~~-dd~IG~~~i-~L~~l~~---g~~~~~W~~L~~~~g~~~k~~G~I~L~l~ 186 (622)
.+.. ....|.|+|||++..+ +++||++.+ ++..+.. +.....|++|.. .+. ..|+|.+..+
T Consensus 55 ~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~~---~~Geil~~~~ 130 (135)
T cd04017 55 DEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GGQ---SAGELLAAFE 130 (135)
T ss_pred eeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CCC---chhheeEEeE
Confidence 7422 1246899999999887 789999987 5555543 356789999963 343 3589999998
Q ss_pred eecc
Q 007000 187 YTPV 190 (622)
Q Consensus 187 f~p~ 190 (622)
+.+.
T Consensus 131 ~~~~ 134 (135)
T cd04017 131 LIEV 134 (135)
T ss_pred EEEe
Confidence 8764
No 65
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=6.7e-16 Score=140.90 Aligned_cols=113 Identities=24% Similarity=0.294 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeeeEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~~~~kT~vi~~t~nPvWNE~f 119 (622)
.|+|+|++|++|+.++. .+.+||||+|.+.+ ...+||++++++.||+|||+|
T Consensus 2 ~~~V~v~~a~~L~~~~~--------------------------~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f 55 (126)
T cd04043 2 LFTIRIVRAENLKADSS--------------------------NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEF 55 (126)
T ss_pred EEEEEEEEeECCCCCCC--------------------------CCCCCceEEEEECCCCeeeecccEecCCCCCcccceE
Confidence 58999999999998774 45689999999864 345699999999999999999
Q ss_pred EEecCCC-CcEEEEEEEecCCcC-CeeeEeEEEeceeecC---CCeeeecccccCCCCCccccCceEEEEEEee
Q 007000 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (622)
Q Consensus 120 ~~~v~~~-~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~---g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~ 188 (622)
.|++... ...|.|+|||++..+ +++||++.++|+++.. +...+.|++|. ++ |++++.+.+.
T Consensus 56 ~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~~-------g~i~l~~~~~ 121 (126)
T cd04043 56 ELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-TQ-------GRLLLRVSME 121 (126)
T ss_pred EEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-CC-------CeEEEEEEEe
Confidence 9999764 478999999999876 7899999999987643 44567899994 22 5677777664
No 66
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.68 E-value=2.6e-16 Score=142.87 Aligned_cols=104 Identities=26% Similarity=0.435 Sum_probs=87.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCe
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPV 114 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~--~~~kT~vi~~t~nPv 114 (622)
..+.|+|+|++|+||+.++.. .+.+||||+|.+.. . ..+||++++++.||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~-------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEK-------------------------KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPV 66 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCC-------------------------CCCCCcEEEEEEecCCCcCceeeccccCCCCCCc
Confidence 458899999999999987620 45689999999842 1 345999999999999
Q ss_pred eeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccc
Q 007000 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 115 WNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
|||+|.|.+... ...|.|.|||++..+ +++||++.++|.++..+...+.||+|
T Consensus 67 wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 67 FNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999988653 368999999999876 78999999999999877778999987
No 67
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.8e-16 Score=168.81 Aligned_cols=201 Identities=21% Similarity=0.188 Sum_probs=148.9
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCee
Q 007000 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVW 115 (622)
Q Consensus 38 ~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~~~~kT~vi~~t~nPvW 115 (622)
.....|.|+|++|++|+.+|. .|.+||||++.+-. +...+|++.++++||+|
T Consensus 164 ~~~~~L~V~V~qa~~Lp~~d~--------------------------~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~f 217 (421)
T KOG1028|consen 164 FELNLLTVRVIQAHDLPAKDR--------------------------GGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVF 217 (421)
T ss_pred ccCCEEEEEEEEecCCCcccC--------------------------CCCCCCeeEEEEcCCCCCcceeeeeecCcCCcc
Confidence 344579999999999999873 56799999999953 22339999999999999
Q ss_pred eeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeeccc
Q 007000 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVE 191 (622)
Q Consensus 116 NE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~~ 191 (622)
||+|.|.+... ...|.|+|||.|.++ +++||++.++|..+........|.+|...........|++.+.++|.|..
T Consensus 218 nEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~ 297 (421)
T KOG1028|consen 218 NETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTA 297 (421)
T ss_pred ccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCC
Confidence 99999997543 378999999999988 99999999999988866667889999764322223337999999999975
Q ss_pred c-ccccccCCCCCCCccCCCCC--CCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HHHHHHHHHhcccEEE
Q 007000 192 N-MSLYYRGVGSGPDYIGVPGT--YFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQDVYDAINQARRLIY 267 (622)
Q Consensus 192 ~-l~~~~~g~~~~~~~~~~~~~--~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~~l~~aI~~Ar~~I~ 267 (622)
. +....-- ...+..+..+ ..+++ ++.++.++....+++++++..+.+|+++|.+ |.-=.+.+++ -+|.
T Consensus 298 g~ltv~v~k---ar~L~~~~~~~~~d~~V---k~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~--~~l~ 369 (421)
T KOG1028|consen 298 GRLTVVVIK---ARNLKSMDVGGLSDPYV---KVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE--VSLE 369 (421)
T ss_pred CeEEEEEEE---ecCCCcccCCCCCCccE---EEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe--eEEE
Confidence 3 2211100 0122222211 13565 8889998888889999999999999999986 6333344443 5677
Q ss_pred EEEEe
Q 007000 268 ITGWS 272 (622)
Q Consensus 268 I~~y~ 272 (622)
|+.|.
T Consensus 370 l~V~d 374 (421)
T KOG1028|consen 370 LTVWD 374 (421)
T ss_pred EEEEE
Confidence 77763
No 68
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=3.2e-16 Score=142.83 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=87.0
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeee
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~~~~kT~vi~~t~nPvWNE 117 (622)
.+.|+|+|++|++|+.+|. .+.+||||+|.+. +....||++++++.||+|||
T Consensus 15 ~~~L~v~v~~a~~L~~~d~--------------------------~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne 68 (125)
T cd08386 15 ESTLTLKILKAVELPAKDF--------------------------SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNE 68 (125)
T ss_pred CCEEEEEEEEecCCCCccC--------------------------CCCCCceEEEEECCCCCcceeeeeecCCCCCccce
Confidence 4689999999999998775 4568999999993 23345999999999999999
Q ss_pred EEEEecCCC----CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 118 HFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 118 ~f~~~v~~~----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
+|.|++... ...|.|+|+|++..+ +++||++.++|+++..+...+.|++|.
T Consensus 69 ~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 69 TFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred eEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999975322 257999999999876 889999999999998888889999984
No 69
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.7e-16 Score=139.52 Aligned_cols=104 Identities=30% Similarity=0.435 Sum_probs=90.6
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|+|+|++|++|+..+. .+.+||||+|.+++...++|+++.++.||+|||+|.|.
T Consensus 1 l~v~vi~a~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~ 54 (115)
T cd04040 1 LTVDVISAENLPSADR--------------------------NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVP 54 (115)
T ss_pred CEEEEEeeeCCCCCCC--------------------------CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEE
Confidence 5899999999998764 45689999999987666799999999999999999999
Q ss_pred cCCC-CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCC
Q 007000 123 VAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSR 172 (622)
Q Consensus 123 v~~~-~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g 172 (622)
+... .+.+.|.|||++..+ +++||++.+++.++..+...+.|++|..+.+
T Consensus 55 ~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~ 106 (115)
T cd04040 55 VPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG 106 (115)
T ss_pred eccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence 8764 478999999998876 8899999999999998888899999965544
No 70
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.67 E-value=1.4e-16 Score=147.83 Aligned_cols=109 Identities=26% Similarity=0.282 Sum_probs=89.4
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeecCCCCC
Q 007000 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAV--IGRTFVISNSESP 113 (622)
Q Consensus 38 ~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~~--~~kT~vi~~t~nP 113 (622)
...+.|.|+|++|+||+..|. +|.+||||+|.+. +.+ ..||+++++++||
T Consensus 12 ~~~~~L~V~Vi~A~nL~~~~~--------------------------~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP 65 (136)
T cd08406 12 PTAERLTVVVVKARNLVWDNG--------------------------KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNP 65 (136)
T ss_pred CCCCEEEEEEEEeeCCCCccC--------------------------CCCCCeEEEEEEEeCCccccccCCccccCCCCC
Confidence 345789999999999998764 5679999999993 221 3389999999999
Q ss_pred eeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 114 VWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 114 vWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
+|||+|.|.++.. ...|+|+|+|+|..+ +++||++.|+.. ..|...++|..+....+++
T Consensus 66 ~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 66 IFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred eeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 9999999998653 367999999999776 899999999875 4577789999998776654
No 71
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=1.6e-16 Score=147.51 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=93.0
Q ss_pred ceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecC
Q 007000 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISN 109 (622)
Q Consensus 34 ~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~--~~~kT~vi~~ 109 (622)
|.-....+.|.|+|++|+||+.+|... .+.+||||+|++.. + +..||+++++
T Consensus 8 L~Y~~~~~~L~V~V~karnL~~~d~~~------------------------~~~~DpYVKv~l~~~~~k~~kkkT~v~k~ 63 (138)
T cd08407 8 ISYLPAANRLLVVVIKAKNLHSDQLKL------------------------LLGIDVSVKVTLKHQNAKLKKKQTKRAKH 63 (138)
T ss_pred EEEeCCCCeEEEEEEEecCCCccccCC------------------------CCCCCeEEEEEEEcCCcccceeccceeeC
Confidence 333445688999999999999887410 23389999999953 2 2348999999
Q ss_pred CCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCcc
Q 007000 110 SESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (622)
Q Consensus 110 t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~ 175 (622)
+.||+|||+|.|.++.. ...|.|+|+|+|..+ +++||++.+++.. .|...++|..++...+++.
T Consensus 64 t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 64 KINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred CCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 99999999999998753 367999999999887 8999999999973 6777899999987766643
No 72
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=4e-16 Score=142.13 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=89.3
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHF 119 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~-t~nPvWNE~f 119 (622)
|.|+|+|++|++|+.++. .+++||||+|+++++.. +|+++++ +.||+|||+|
T Consensus 1 g~L~V~V~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f 53 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF--------------------------LGKIDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKF 53 (124)
T ss_pred CeEEEEEEecCCCCCCCC--------------------------CCCcCceEEEEECCEee-eeeEcCCCCCCCcccceE
Confidence 679999999999998775 34589999999988776 8998875 8999999999
Q ss_pred EEecCCC----CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccC
Q 007000 120 NVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (622)
Q Consensus 120 ~~~v~~~----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~ 169 (622)
.|.+... .+.|.|.|+|.+..+ +++||++.++|.++..+...+.|+.|..
T Consensus 54 ~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 54 KFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred EEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 9998765 468999999998876 8899999999999998778899999953
No 73
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=3.8e-16 Score=139.75 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=86.3
Q ss_pred CCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEecCCCC-cEEEEEEEecCCcCCeeeEeEEEeceeecC-CCeee
Q 007000 85 KITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCS-GDKIE 162 (622)
Q Consensus 85 ~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~~-~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~-g~~~~ 162 (622)
+|.+||||+|.++++..++|++++++.||+|||+|.|.+.+.. +.|.|.|+|++..++++||.+.++|+++.. +...+
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~~ 89 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVGQ 89 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhccc
Confidence 6789999999999877779999999999999999999997654 779999999987788999999999999864 45568
Q ss_pred ecccccCCCCCccccCceEEEEEEeecc
Q 007000 163 GAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (622)
Q Consensus 163 ~W~~L~~~~g~~~k~~G~I~L~l~f~p~ 190 (622)
.||+|.+ . ..|+|++.++|.|+
T Consensus 90 ~w~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 90 QWFPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred eeEECCC---C---CCCEEEEEEEEecC
Confidence 9999953 1 34899999999984
No 74
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=5.2e-16 Score=142.52 Aligned_cols=106 Identities=24% Similarity=0.298 Sum_probs=85.5
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCee
Q 007000 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVW 115 (622)
Q Consensus 38 ~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~~~~kT~vi~~t~nPvW 115 (622)
...+.|+|+|++|++|+.++.. ++.+||||+|.+. .+...||++++++.||+|
T Consensus 13 ~~~~~L~V~Vi~a~~L~~~~~~-------------------------~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~w 67 (128)
T cd08388 13 SEKKALLVNIIECRDLPAMDEQ-------------------------SGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVY 67 (128)
T ss_pred CCCCEEEEEEEEeECCCCCCCC-------------------------CCCcCCEEEEEEeCCcCceeeccEEcCCCCCce
Confidence 3456899999999999987641 2668999999995 233449999999999999
Q ss_pred eeEEEEe-cCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecC--CCeeeeccccc
Q 007000 116 MQHFNVP-VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS--GDKIEGAFPIL 168 (622)
Q Consensus 116 NE~f~~~-v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~--g~~~~~W~~L~ 168 (622)
||+|.|. +... ...|.|+|||++..+ +++||++.++|+++.. +.....|++|+
T Consensus 68 nE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 68 DETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred eeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9999993 4321 247899999999876 8899999999999864 36678899884
No 75
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=5.7e-16 Score=138.46 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=84.0
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
-.|+|+|++|++|+ ++.+||||+|++++++. ||++++++.||+|||+|.
T Consensus 4 ~~l~V~v~~a~~L~------------------------------~~~~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~ 52 (111)
T cd04011 4 FQVRVRVIEARQLV------------------------------GGNIDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFF 52 (111)
T ss_pred EEEEEEEEEcccCC------------------------------CCCCCCEEEEEECCEee-eeeEEeccCCCccccEEE
Confidence 46899999999998 13489999999998877 999999999999999999
Q ss_pred EecCCC-----CcEEEEEEEecCCcC-CeeeEeEEEeceeecCC---CeeeecccccC
Q 007000 121 VPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG---DKIEGAFPILN 169 (622)
Q Consensus 121 ~~v~~~-----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g---~~~~~W~~L~~ 169 (622)
|.+... ...|.|+|+|.+..+ +++||++.++|+++..+ ...+.|++|.+
T Consensus 53 f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 53 FNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 987543 257999999999876 89999999999999765 44688999954
No 76
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.66 E-value=3.2e-16 Score=144.52 Aligned_cols=112 Identities=20% Similarity=0.266 Sum_probs=91.7
Q ss_pred eeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCC
Q 007000 35 KVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNS 110 (622)
Q Consensus 35 ~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t 110 (622)
......+.|.|+|++|++|+.+|. .+.+||||+|.+.. ....||++++++
T Consensus 7 ~y~~~~~~L~V~Vi~a~~L~~~d~--------------------------~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t 60 (133)
T cd08384 7 MYNTQRRGLIVGIIRCVNLAAMDA--------------------------NGYSDPFVKLYLKPDAGKKSKHKTQVKKKT 60 (133)
T ss_pred EEcCCCCEEEEEEEEEcCCCCcCC--------------------------CCCCCcEEEEEEEcCCCccCCceeeeEecc
Confidence 334456899999999999998875 45689999999952 223599999999
Q ss_pred CCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 111 ESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 111 ~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
.||+|||+|.|++... ...|.|+|||++..+ +++||++.+++.. .+...++|++++...+++
T Consensus 61 ~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 61 LNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred CCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 9999999999998653 357999999999876 7899999999974 466678999998766654
No 77
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.65 E-value=7.3e-16 Score=139.97 Aligned_cols=108 Identities=20% Similarity=0.172 Sum_probs=89.5
Q ss_pred eEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCC
Q 007000 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESP 113 (622)
Q Consensus 36 ~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~~~~kT~vi~~t~nP 113 (622)
.....+.|.|+|++|++|+.++.. .+.+||||+|.+. +...++|++++++.||
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~-------------------------~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P 63 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKD-------------------------VAHCDPFVKVCLLPDERRSLQSKVKRKTQNP 63 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCC-------------------------CCCCCcEEEEEEeeCCCCceEeeeEcCCCCC
Confidence 334457899999999999987620 3568999999983 3344599999999999
Q ss_pred eeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 114 VWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 114 vWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
+|||+|.|.+... ...|.|+|||.+..+ +++||++.++|+++........|++|.
T Consensus 64 ~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 64 NFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9999999998653 257999999998876 789999999999999877778999984
No 78
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.65 E-value=2e-15 Score=135.65 Aligned_cols=113 Identities=27% Similarity=0.413 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+|+|++|++|+.+ +.+||||+|++++++.+||+++++ .||+|||+|.|
T Consensus 1 ~L~v~vi~a~~l~~~-----------------------------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f 50 (117)
T cd08383 1 SLRLRILEAKNLPSK-----------------------------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVF 50 (117)
T ss_pred CeEEEEEEecCCCcC-----------------------------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEE
Confidence 378999999999853 348999999999877679999999 99999999999
Q ss_pred ecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 122 PVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 122 ~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
.+... ...|.|.++|.+... +..+|.+.| ..+..+...+.|++|...++.. +..|+|+|.++|
T Consensus 51 ~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 51 DDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVAL--SKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred ecCCccccEEEEEEEEEecccCCCeeEEEEEEe--cCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 98763 256777788876554 456776554 4455577789999997654432 356899999876
No 79
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=6.3e-16 Score=142.12 Aligned_cols=115 Identities=18% Similarity=0.270 Sum_probs=89.5
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeec
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVIS 108 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~--~~~~kT~vi~ 108 (622)
||......|.|+|+|++|+||++++. .+.+||||+|++- + .+..||++++
T Consensus 6 sL~Y~p~~~rLtV~VikarnL~~~~~--------------------------~~~~dpYVKV~L~~~~k~~~KkKT~v~k 59 (135)
T cd08692 6 GTCFQAVNSRIQLQILEAQNLPSSST--------------------------PLTLSFFVKVGMFSTGGLLYKKKTRLVK 59 (135)
T ss_pred EeeecCcCCeEEEEEEEccCCCcccC--------------------------CCCCCcEEEEEEEECCCcceeecCccEE
Confidence 45555667899999999999997532 3457999999993 2 2344999999
Q ss_pred CCC-CCeeeeEEEEecCCCC--cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 109 NSE-SPVWMQHFNVPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 109 ~t~-nPvWNE~f~~~v~~~~--~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
+|+ ||+|||+|.|+++... ..|.++|+|++..+ +++||++.++.++. .+...++|..+....+++
T Consensus 60 ~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 60 SSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKV 128 (135)
T ss_pred CCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCe
Confidence 995 6999999999987544 45677889988776 89999999999753 345578999998766654
No 80
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.64 E-value=6.3e-16 Score=143.31 Aligned_cols=108 Identities=26% Similarity=0.387 Sum_probs=89.5
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCe
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPV 114 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~--~~~kT~vi~~t~nPv 114 (622)
..+.|.|+|++|++|+.+|. .|.+||||+|.+. ++ ...||++++++.||+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~--------------------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~ 66 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDV--------------------------SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPV 66 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc--------------------------CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCc
Confidence 45789999999999998775 4668999999984 22 234899999999999
Q ss_pred eeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 115 WNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
|||+|.|.+... ...|.|+|||++..+ +++||++.+++.. .+...++|++|.+..|++
T Consensus 67 w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 67 FNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred cCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 999999998642 357889999999887 8899999999987 466678999997766653
No 81
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=6.9e-16 Score=145.64 Aligned_cols=97 Identities=31% Similarity=0.445 Sum_probs=84.1
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE---------------------
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--------------------- 99 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~--------------------- 99 (622)
+.|+|+|++|++|+++|. .|.+||||+|.+...
T Consensus 28 ~~L~V~vi~a~~L~~~d~--------------------------~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDV--------------------------NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVL 81 (153)
T ss_pred EEEEEEEEeccCCcccCC--------------------------CCCCCceEEEEEcccccccccccccccccccccccc
Confidence 899999999999998875 467999999999532
Q ss_pred -------EEeeeeeecCCCCCeeeeEEEEecCCC-CcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccc
Q 007000 100 -------VIGRTFVISNSESPVWMQHFNVPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 100 -------~~~kT~vi~~t~nPvWNE~f~~~v~~~-~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
..++|+++++++||+|||+|.|++... .+.|.|+|||++ +++||++.++++++. +...+.||+|
T Consensus 82 ~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 82 KDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred cccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 235899999999999999999999764 478999999988 889999999999998 4457999987
No 82
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.64 E-value=3e-15 Score=144.15 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChH
Q 007000 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDE 330 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~ 330 (622)
+++.+.++|.+|+++|+|+.|.|++.. ......|.++|.+|++|||+||||+ |........ ...
T Consensus 22 ~~~~i~~~I~~A~~~I~i~~~~~~~~~-----~~~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~~----------~~~ 85 (176)
T cd00138 22 DLDALLEAISNAKKSIYIASFYLSPLI-----TEYGPVILDALLAAARRGVKVRILV-DEWSNTDLK----------ISS 85 (176)
T ss_pred HHHHHHHHHHhhheEEEEEEeEecccc-----cccchHHHHHHHHHHHCCCEEEEEE-cccccCCch----------HHH
Confidence 899999999999999999999654331 1345889999999999999999997 554432100 012
Q ss_pred HHHhhhcCC---CeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCC
Q 007000 331 ETRRFFKHS---SVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPL 407 (622)
Q Consensus 331 ~~~~~l~~~---gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~ 407 (622)
.....|... ++++...+... . ...++|+|++|||+ +++++||.|+.+.++.
T Consensus 86 ~~~~~l~~~~~~~i~~~~~~~~~----------~--~~~~~H~K~~iiD~--------~~~~vGS~N~~~~~~~------ 139 (176)
T cd00138 86 AYLDSLRALLDIGVRVFLIRTDK----------T--YGGVLHTKLVIVDD--------ETAYIGSANLDGRSLT------ 139 (176)
T ss_pred HHHHHHHHhhcCceEEEEEcCCc----------c--cccceeeeEEEEcC--------CEEEEECCcCChhhhh------
Confidence 344455544 78887654321 0 23679999999999 8999999999997653
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeCh--HHHHHHHHHHHHHhhc
Q 007000 408 FKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP--AAYDILTNFEERWLKA 462 (622)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gp--av~dl~~~F~~~W~~~ 462 (622)
.++|..+.+.+| ++.++.+.|.+.|+..
T Consensus 140 ---------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 ---------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred ---------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 357999999999 7999999999999974
No 83
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=9.5e-16 Score=140.00 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=86.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeee
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWM 116 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~~~~kT~vi~~t~nPvWN 116 (622)
..+.|.|+|++|+||++.+. ++..||||++.+. +....||+++++ .||+||
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~--------------------------~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fn 66 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDR--------------------------GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFN 66 (124)
T ss_pred CCCEEEEEEEEecCCCchhc--------------------------CCCCCcEEEEEEccCCcceeecccccC-CCCccc
Confidence 34689999999999998764 4568999998873 233449999887 999999
Q ss_pred eEEEEe-cCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 117 QHFNVP-VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 117 E~f~~~-v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
|+|.|+ +... ...|.|+|+|++..+ +++||++.|+|+++..+.....|++|.
T Consensus 67 E~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 67 ETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999998 5542 367999999999887 899999999999998887889999984
No 84
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-16 Score=165.25 Aligned_cols=108 Identities=27% Similarity=0.409 Sum_probs=92.8
Q ss_pred eEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCC
Q 007000 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSE 111 (622)
Q Consensus 36 ~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~----~~~~~kT~vi~~t~ 111 (622)
.-.....|.|+|.+|+||.+||. +|.+||||++++- ++...||++++.++
T Consensus 175 ~~~~~~~l~v~i~ea~NLiPMDp--------------------------NGlSDPYvk~kliPD~~~~sKqKTkTik~~L 228 (683)
T KOG0696|consen 175 AHIKRDVLTVTIKEAKNLIPMDP--------------------------NGLSDPYVKLKLIPDPKNESKQKTKTIKATL 228 (683)
T ss_pred EEecCceEEEEehhhccccccCC--------------------------CCCCCcceeEEeccCCcchhhhhhhhhhhhc
Confidence 33455689999999999999997 8899999999993 33445999999999
Q ss_pred CCeeeeEEEEecCCCC--cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCC
Q 007000 112 SPVWMQHFNVPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (622)
Q Consensus 112 nPvWNE~f~~~v~~~~--~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~ 170 (622)
||+|||+|+|.+.+.. ..|.++|||||..+ +||+|+.++.+++|. ....++||.|+++
T Consensus 229 NP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 229 NPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQ 289 (683)
T ss_pred CccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhh
Confidence 9999999999986544 78999999999887 999999999999997 4456789999875
No 85
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.63 E-value=1.9e-15 Score=138.44 Aligned_cols=103 Identities=23% Similarity=0.261 Sum_probs=82.7
Q ss_pred ccCCCcccCcceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEee
Q 007000 24 AVPFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGR 103 (622)
Q Consensus 24 ~~~~~~~~~~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~k 103 (622)
+|.++.+.++.+.- .|.|+|+|++|++|+. +. .+.+||||+|.+++++. |
T Consensus 13 ~~~~~~~~~~~~~~--~~~L~V~V~~A~~L~~-d~--------------------------~g~~DPYVkV~~~~~~~-k 62 (127)
T cd04032 13 SPNVNSNCCPTRRG--LATLTVTVLRATGLWG-DY--------------------------FTSTDGYVKVFFGGQEK-R 62 (127)
T ss_pred CCCcCCCcCcCcCC--cEEEEEEEEECCCCCc-Cc--------------------------CCCCCeEEEEEECCccc-c
Confidence 34555655553322 2899999999999973 43 34589999999988855 9
Q ss_pred eeeecCCCCCeeeeEEEEecCC--CCcEEEEEEEecCCcC-CeeeEeEEEeceeec
Q 007000 104 TFVISNSESPVWMQHFNVPVAH--SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC 156 (622)
Q Consensus 104 T~vi~~t~nPvWNE~f~~~v~~--~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~ 156 (622)
|++++++.||+|||+|.|.... ..+.|+|+|||++..+ +++||++.++|+...
T Consensus 63 T~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 63 TEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 9999999999999999997432 3579999999999886 899999999998554
No 86
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.62 E-value=9e-16 Score=142.24 Aligned_cols=112 Identities=27% Similarity=0.426 Sum_probs=90.5
Q ss_pred eeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCC
Q 007000 35 KVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNS 110 (622)
Q Consensus 35 ~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~--~~~kT~vi~~t 110 (622)
+-....|.|+|+|++|++|+.+|. .+++||||+|.+. ++ ...+|++++++
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t 62 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDV--------------------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKRT 62 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccC--------------------------CCCCCCeEEEEEEECCcccceeeccceeCC
Confidence 333455899999999999998764 4668999999994 22 33489999999
Q ss_pred CCCeeeeEEEEecCCCC---cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 111 ESPVWMQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 111 ~nPvWNE~f~~~v~~~~---~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
.||+|||+|.|.+.... ..|.|+|||++..+ +++||++.|++.. .+...++|++|....+++
T Consensus 63 ~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 63 LNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred CCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 99999999999986432 47899999999887 7899999999975 366678999998765543
No 87
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.62 E-value=1.8e-15 Score=144.62 Aligned_cols=103 Identities=28% Similarity=0.376 Sum_probs=84.5
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCe
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPV 114 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~----~~~~~kT~vi~~t~nPv 114 (622)
..|.|.|+|++|++|+.++. .+.+||||+|.+. +....||++++++.||+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~--------------------------~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~ 78 (162)
T cd04020 25 STGELHVWVKEAKNLPALKS--------------------------GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV 78 (162)
T ss_pred CCceEEEEEEeeeCCCCCCC--------------------------CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence 45899999999999998774 4668999999983 22345999999999999
Q ss_pred eeeEEEEecCCC----CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccc
Q 007000 115 WMQHFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 115 WNE~f~~~v~~~----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
|||+|.|.+... ...|+|+|||++..+ +++||++.++++++......+.|+.|
T Consensus 79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 999999985322 257999999999887 89999999999998754455667766
No 88
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.61 E-value=6.6e-15 Score=138.94 Aligned_cols=102 Identities=19% Similarity=0.352 Sum_probs=82.7
Q ss_pred CCCCCcEEEEEE----CCEEEeeeeeecCCCCCeeeeEEEEecCCC---------CcEEEEEEEecCCc--CCeeeEeEE
Q 007000 85 KITSDPYVTVSI----CGAVIGRTFVISNSESPVWMQHFNVPVAHS---------AAEVHFVVKDNDFV--GSQIMGAVG 149 (622)
Q Consensus 85 ~g~~DPYv~V~l----~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~---------~~~L~l~V~D~d~~--~dd~IG~~~ 149 (622)
++.+||||++.+ .+....||+++++|+||+|||+|.|.+... ...|.|+|||.+.+ .|++||++.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 567899999997 333345999999999999999999998644 24699999999875 389999999
Q ss_pred EeceeecCCCeeeecccccCCCCCccccCceEEEEEEeec
Q 007000 150 IPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 150 i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
++|+.+........|++|.+. .++ .+|.+++.++...
T Consensus 102 i~L~~l~~~~~~~~~~~L~~~-~k~--~Gg~l~v~ir~r~ 138 (155)
T cd08690 102 VKLEPLETKCEIHESVDLMDG-RKA--TGGKLEVKVRLRE 138 (155)
T ss_pred EEcccccccCcceEEEEhhhC-CCC--cCCEEEEEEEecC
Confidence 999999877667789999742 332 5689999998764
No 89
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=1.8e-15 Score=140.23 Aligned_cols=108 Identities=22% Similarity=0.353 Sum_probs=89.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCe
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPV 114 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~--~~~kT~vi~~t~nPv 114 (622)
..++|.|+|++|++|+.++. .+.+||||+|.+. +. ...||++++++.||+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~--------------------------~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~ 66 (136)
T cd08405 13 TANRITVNIIKARNLKAMDI--------------------------NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPV 66 (136)
T ss_pred CCCeEEEEEEEeeCCCcccc--------------------------CCCCCceEEEEEEeCCCccccccCcceeCCCCCc
Confidence 34789999999999998764 4568999999983 22 234899999999999
Q ss_pred eeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 115 WNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
|||+|.|.+... ...|.|+|+|.+..+ +++||++.+++.+. +...++|++|....+++
T Consensus 67 wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 67 FNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQP 128 (136)
T ss_pred ccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCc
Confidence 999999987532 357999999999887 88999999999865 66678999998776654
No 90
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=3.4e-15 Score=139.96 Aligned_cols=93 Identities=30% Similarity=0.503 Sum_probs=82.6
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
|.|+|+|++|++|+..|. +.+||||+|++++++. ||++++++.||+|||+|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~---------------------------~~sDPYV~v~~g~~~~-kT~vvk~t~nP~WnE~f~ 53 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF---------------------------TSSDPYVVLTLGNQKV-KTRVIKKNLNPVWNEELT 53 (145)
T ss_pred eEEEEEEEeeECCCCCCC---------------------------CCcCcEEEEEECCEEE-EeeeEcCCCCCeecccEE
Confidence 789999999999987653 3489999999998876 999999999999999999
Q ss_pred EecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCee
Q 007000 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKI 161 (622)
Q Consensus 121 ~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~ 161 (622)
|.+.+....|.|+|||++.++ +++||++.+++.++......
T Consensus 54 f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 54 LSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 999877789999999999887 89999999999988865433
No 91
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=1.4e-15 Score=140.97 Aligned_cols=109 Identities=24% Similarity=0.368 Sum_probs=86.6
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC-C-E--EEeeeeeecCCCCC
Q 007000 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC-G-A--VIGRTFVISNSESP 113 (622)
Q Consensus 38 ~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~-~-~--~~~kT~vi~~t~nP 113 (622)
...|.|+|+|++|++|+.+|. .|.+||||+|.+. + . ...||++++++.||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~--------------------------~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP 64 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDM--------------------------SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDP 64 (135)
T ss_pred CCCCeEEEEEEEecCCCcccC--------------------------CCCCCeEEEEEEEcCCcccceEcCccccCCCCC
Confidence 345899999999999998875 4568999999983 2 1 23489999999999
Q ss_pred eeeeEEEEecCCCC---cEEEEEEEecCCcC-CeeeEeEEEeceeecCCC-eeeecccccCCCCCc
Q 007000 114 VWMQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD-KIEGAFPILNSSRKP 174 (622)
Q Consensus 114 vWNE~f~~~v~~~~---~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~-~~~~W~~L~~~~g~~ 174 (622)
+|||+|.|.+.... ..|.|+|||++..+ +++||++.|... ..+. ..++|+.|++..+++
T Consensus 65 ~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~--~~~~~~~~~W~~l~~~~~~~ 128 (135)
T cd08410 65 FYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQY--SSGPSETNHWRRMLNSQRTA 128 (135)
T ss_pred ccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCc--cCCchHHHHHHHHHhCCCCE
Confidence 99999999985432 46899999999776 899999987653 3333 468999998876654
No 92
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.61 E-value=1.6e-15 Score=140.13 Aligned_cols=108 Identities=30% Similarity=0.420 Sum_probs=88.7
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCe
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPV 114 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~~--~~~kT~vi~~t~nPv 114 (622)
..+.|+|+|++|++|+++|. .|.+||||+|.+. ++ ...||++++++.||+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~--------------------------~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~ 65 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDI--------------------------TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT 65 (134)
T ss_pred CCCEEEEEEEEeeCCCcccc--------------------------CCCCCceEEEEEEeCCcccceecCCcccCCCCCc
Confidence 45889999999999998875 4568999999984 22 245899999999999
Q ss_pred eeeEEEEecCCCC---cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 115 WMQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 115 WNE~f~~~v~~~~---~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
|||+|.|.+.... ..|.|+|+|++..+ +++||++.+++. ..+...++|+++...++++
T Consensus 66 wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 66 YNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred ccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 9999999885432 46899999999887 899999999987 4456678999998776654
No 93
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.61 E-value=3.4e-15 Score=138.75 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=85.7
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeecCCCCCeeeeEE
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---AVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~---~~~~kT~vi~~t~nPvWNE~f 119 (622)
|+|+|++|++|+.+ . .+.+||||+|+++. ...+||++++++.||+|||+|
T Consensus 1 L~V~Vi~A~~L~~~-~--------------------------~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f 53 (137)
T cd08675 1 LSVRVLECRDLALK-S--------------------------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAF 53 (137)
T ss_pred CEEEEEEccCCCcc-c--------------------------CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEE
Confidence 57999999999876 3 45689999999983 334599999999999999999
Q ss_pred EEecCCC----------------CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCC
Q 007000 120 NVPVAHS----------------AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (622)
Q Consensus 120 ~~~v~~~----------------~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~ 170 (622)
.|++... ...|.|+|||++..+ +++||++.++|.++........|++|..+
T Consensus 54 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 54 YFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 9997653 357999999999875 89999999999999876678899999654
No 94
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.61 E-value=5.1e-15 Score=159.51 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcccEEEEEEEeecceeeEEeCCC---CchhHHHHHHhhh-cCCCeEEEEEeCCCcccccccccccCccC
Q 007000 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS---NTLMLGDLLKIKS-QEGVRVLILAWDDPTSRSILGYKTDGIMS 326 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~---~g~~l~~~L~~aa-~rGV~VriLv~D~~gs~~~~~~~~~~~~~ 326 (622)
..++++++|++||++|+|++|.|-|. +..+. .+..|.++|.+|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~---~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~---------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPV---IREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV---------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccE---EeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc----------
Confidence 46899999999999999999987664 23332 3579999999885 9999999996 87654211
Q ss_pred CChHHHHhhhcCCCeE----EEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCC
Q 007000 327 TNDEETRRFFKHSSVQ----VLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDT 402 (622)
Q Consensus 327 ~~~~~~~~~l~~~gv~----v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~ 402 (622)
......+.|.++|++ +..+ .+++|+|++|||+ ++||+||+|+.+.++..
T Consensus 283 -~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~--------~~a~iGS~N~d~~s~~~ 335 (369)
T PHA03003 283 -YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDD--------EFAHITSANFDGTHYLH 335 (369)
T ss_pred -hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcC--------CEEEEeccccCchhhcc
Confidence 012456667888854 2221 1238999999999 89999999998866532
Q ss_pred CCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhhc
Q 007000 403 PAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKA 462 (622)
Q Consensus 403 ~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~~ 462 (622)
..+.++ ..++|+++.+|+..|.++|+..
T Consensus 336 -------------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -------------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -------------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 123333 2568999999999999999864
No 95
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.60 E-value=2.5e-15 Score=138.22 Aligned_cols=107 Identities=33% Similarity=0.460 Sum_probs=90.3
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeecCCCCCee
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA----VIGRTFVISNSESPVW 115 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~----~~~kT~vi~~t~nPvW 115 (622)
.+.|.|+|++|++|+..+. .+.+||||+|.+... ...+|+++.++.||+|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~w 66 (134)
T cd00276 13 AERLTVVVLKARNLPPSDG--------------------------KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVF 66 (134)
T ss_pred CCEEEEEEEEeeCCCCccC--------------------------CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCee
Confidence 4789999999999998763 456899999999532 3459999999999999
Q ss_pred eeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 116 NE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
||+|.|.+... ...|.|+|+|.+..+ +++||.+.+++++ .+...++|++|.+..+++
T Consensus 67 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 67 NEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred eeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 99999998764 368999999998765 8899999999998 577789999998776654
No 96
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.60 E-value=2.6e-15 Score=167.75 Aligned_cols=152 Identities=17% Similarity=0.246 Sum_probs=117.6
Q ss_pred CeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcC
Q 007000 220 GKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQE 299 (622)
Q Consensus 220 ~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~r 299 (622)
..++++.+|++ ...++.+..+.++|.+||++|+|+++- ++++ ..+.++|+.||+|
T Consensus 329 ~~~q~~~sgp~---------------~~~~~i~~~~l~~I~~A~~~I~I~tpY------f~pd----~~l~~aL~~Aa~r 383 (509)
T PRK12452 329 GAVQIVASGPS---------------SDDKSIRNTLLAVMGSAKKSIWIATPY------FIPD----QETLTLLRLSAIS 383 (509)
T ss_pred eEEEEEeCCCC---------------chhHHHHHHHHHHHHHhhhEEEEECCc------cCCC----HHHHHHHHHHHHc
Confidence 35777777664 233458999999999999999999962 4444 6899999999999
Q ss_pred CCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCC
Q 007000 300 GVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADA 379 (622)
Q Consensus 300 GV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~ 379 (622)
||+||||+ +....... .........+.|.++||++..+.+. ..|+|++|||+
T Consensus 384 GV~Vrii~-p~~~D~~~--------~~~a~~~~~~~L~~aGv~I~~y~~~-----------------~lHaK~~ivD~-- 435 (509)
T PRK12452 384 GIDVRILY-PGKSDSII--------SDQASQSYFTPLLKAGASIYSYKDG-----------------FMHAKIVLVDD-- 435 (509)
T ss_pred CCEEEEEc-CCCCChHH--------HHHHHHHHHHHHHHcCCEEEEecCC-----------------CeeeeEEEECC--
Confidence 99999996 65332111 1112234567788899999886432 28999999999
Q ss_pred ccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHH
Q 007000 380 GQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERW 459 (622)
Q Consensus 380 ~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W 459 (622)
+++++||+|+....+. ..|.+..+...++.+.+++..|.++|
T Consensus 436 ------~~a~vGS~Nld~RS~~--------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~ 477 (509)
T PRK12452 436 ------KIATIGTANMDVRSFE--------------------------------LNYEIISVLYESETVHDIKRDFEDDF 477 (509)
T ss_pred ------CEEEEeCcccCHhHhh--------------------------------hhhhccEEEECHHHHHHHHHHHHHHH
Confidence 8999999999875442 35778899999999999999999999
Q ss_pred hhc
Q 007000 460 LKA 462 (622)
Q Consensus 460 ~~~ 462 (622)
...
T Consensus 478 ~~s 480 (509)
T PRK12452 478 KHS 480 (509)
T ss_pred HhC
Confidence 964
No 97
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.59 E-value=2.4e-15 Score=139.91 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=89.9
Q ss_pred ceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---E--EEeeeeeec
Q 007000 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---A--VIGRTFVIS 108 (622)
Q Consensus 34 ~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~---~--~~~kT~vi~ 108 (622)
|.--...+.|.|+|++|+||+.++. .+.+||||+|.+.. . ...||++++
T Consensus 8 L~Y~~~~~~L~V~VikarnL~~~~~--------------------------~~~~dpyVkv~llp~~~~~~~~~kT~v~~ 61 (138)
T cd08408 8 LEYNALTGRLSVEVIKGSNFKNLAM--------------------------NKAPDTYVKLTLLNSDGQEISKSKTSIRR 61 (138)
T ss_pred eEEcCCCCeEEEEEEEecCCCcccc--------------------------CCCCCeeEEEEEEeCCCcceeeccceeec
Confidence 3333445899999999999998764 46689999999942 2 234999999
Q ss_pred CCCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCc
Q 007000 109 NSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP 174 (622)
Q Consensus 109 ~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~ 174 (622)
++.||+|||+|.|+++.. ...|.|+|+|.+..+ +++||++.+++.... ....++|+.++...+++
T Consensus 62 ~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 62 GQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQ 130 (138)
T ss_pred CCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCE
Confidence 999999999999998753 258999999998776 899999999986332 23457899998766654
No 98
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.59 E-value=7.5e-15 Score=135.03 Aligned_cols=107 Identities=28% Similarity=0.415 Sum_probs=89.8
Q ss_pred EeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCC
Q 007000 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSES 112 (622)
Q Consensus 37 ~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~n 112 (622)
-+..+.|+|+|++|++|+..+. .+..||||+|.+.+ ...+||++++++.|
T Consensus 9 ~~~~~~l~v~i~~a~nL~~~~~--------------------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~ 62 (131)
T cd04026 9 SVKDNKLTVEVREAKNLIPMDP--------------------------NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLN 62 (131)
T ss_pred EECCCEEEEEEEEeeCCCCcCC--------------------------CCCCCCcEEEEEEcCCCCCceecceeecCCCC
Confidence 4455889999999999997764 34689999999963 34569999999999
Q ss_pred CeeeeEEEEecCCC--CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCC
Q 007000 113 PVWMQHFNVPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (622)
Q Consensus 113 PvWNE~f~~~v~~~--~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~ 170 (622)
|+|||+|.|.+... ...|.|+|||.+..+ +++||++.++|+++... ..+.||+|.+.
T Consensus 63 P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 63 PVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99999999998654 368999999998776 78999999999999854 67889999764
No 99
>PRK13912 nuclease NucT; Provisional
Probab=99.59 E-value=3.4e-14 Score=137.76 Aligned_cols=140 Identities=18% Similarity=0.209 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCCh
Q 007000 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (622)
Q Consensus 250 ~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~ 329 (622)
+++..++++|++|+++|+|+.| .+.+ ..+.++|.+|++|||+||||+ |..++....
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y-------~~~~----~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~~------------ 88 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIY-------SFTH----KDIAKALKSAAKRGVKISIIY-DYESNHNND------------ 88 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEE-------EEch----HHHHHHHHHHHHCCCEEEEEE-eCccccCcc------------
Confidence 4789999999999999999999 4444 679999999999999999996 876542111
Q ss_pred HHHHhhh-cCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCc
Q 007000 330 EETRRFF-KHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (622)
Q Consensus 330 ~~~~~~l-~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~ 408 (622)
......+ +.++++++........ .......+|+|++|||+ +++++||.|++..++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~--------~~~~iGS~N~t~~s~~~------ 146 (177)
T PRK13912 89 QSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDD--------KIVVLGSANWSKNAFEN------ 146 (177)
T ss_pred hhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcC--------CEEEEeCCCCChhHhcc------
Confidence 1111122 2356776664322100 00123569999999999 89999999999876642
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHHhhc
Q 007000 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLKA 462 (622)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpa-v~dl~~~F~~~W~~~ 462 (622)
=+++.+.++.|. +.++.+.|.+.|...
T Consensus 147 ---------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 ---------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred ---------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 145677888866 799999999999864
No 100
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.59 E-value=1.8e-14 Score=131.40 Aligned_cols=118 Identities=30% Similarity=0.452 Sum_probs=92.7
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCC-CCee
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSE-SPVW 115 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~-----~~~~kT~vi~~t~-nPvW 115 (622)
.|+|+|++|++|+.++.. ..+..||||+|++.+ ....||+++.++. ||+|
T Consensus 3 ~l~v~vi~a~~L~~~~~~------------------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w 58 (128)
T cd00275 3 TLTIKIISGQQLPKPKGD------------------------KGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVW 58 (128)
T ss_pred EEEEEEEeeecCCCCCCC------------------------CCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCcc
Confidence 589999999999977610 034589999999942 2234999988776 9999
Q ss_pred eeEEEEecCCCC-cEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 116 MQHFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 116 NE~f~~~v~~~~-~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
||+|.|.+.... ..|.|+|+|++..++++||++.+++++|..| ..|++|.+..|+.. ..|.+.+.+++
T Consensus 59 ~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 59 NETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred CCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCC-cceeEEEEEEE
Confidence 999999986554 6789999998877788999999999999765 36899987777632 45777777664
No 101
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.58 E-value=1.3e-14 Score=132.44 Aligned_cols=89 Identities=26% Similarity=0.417 Sum_probs=77.0
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEE-eeeeeecCCCCCeeeeEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVI-GRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~-~kT~vi~~t~nPvWNE~f~ 120 (622)
+|+|+|++|++|+.+|. .+++||||+|.++++.. .||++++++.||+|||+|.
T Consensus 1 ~lrV~Vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~ 54 (124)
T cd04037 1 LVRVYVVRARNLQPKDP--------------------------NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFE 54 (124)
T ss_pred CEEEEEEECcCCCCCCC--------------------------CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEE
Confidence 47999999999998875 45689999999987653 4889999999999999999
Q ss_pred EecCCC-CcEEEEEEEecCCcC-CeeeEeEEEeceeec
Q 007000 121 VPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC 156 (622)
Q Consensus 121 ~~v~~~-~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~ 156 (622)
|++... .+.|.|+|||++..+ +++||++.++|++..
T Consensus 55 f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 55 LEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred EEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 987544 478999999999886 899999999998665
No 102
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.58 E-value=4.3e-15 Score=138.07 Aligned_cols=108 Identities=22% Similarity=0.300 Sum_probs=88.7
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCe
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPV 114 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~--~~~kT~vi~~t~nPv 114 (622)
..+.|.|+|++|+||+..+ .+.+||||+|.+.. + ...||++++++.||+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~---------------------------~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~ 65 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD---------------------------HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPS 65 (137)
T ss_pred CCCeEEEEEEEecCCCccc---------------------------CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCc
Confidence 3478999999999999765 23489999999842 2 234899999999999
Q ss_pred eeeEEEEecCCC--C-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCC
Q 007000 115 WMQHFNVPVAHS--A-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK 173 (622)
Q Consensus 115 WNE~f~~~v~~~--~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~ 173 (622)
|||+|.|.++.. . ..|.|+|+|.+..+ +++||++.++......|...++|..+....++
T Consensus 66 fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~ 128 (137)
T cd08409 66 FNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKE 128 (137)
T ss_pred ccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCC
Confidence 999999998642 2 57999999998766 88999999998766778888999999876554
No 103
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.57 E-value=8.7e-15 Score=135.23 Aligned_cols=92 Identities=26% Similarity=0.403 Sum_probs=78.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeecCCCCC
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------AVIGRTFVISNSESP 113 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~------~~~~kT~vi~~t~nP 113 (622)
.+.|+|+|++|++|+.++. .+++||||+|.+.. ....||++++++.||
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~--------------------------~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP 68 (133)
T cd04009 15 EQSLRVEILNARNLLPLDS--------------------------NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFP 68 (133)
T ss_pred CCEEEEEEEEeeCCCCcCC--------------------------CCCCCCEEEEEEECCCcCccccccccccCcCCCCC
Confidence 3679999999999998764 45689999999952 234599999999999
Q ss_pred eeeeEEEEecCCC-----CcEEEEEEEecCCcC-CeeeEeEEEeceeecC
Q 007000 114 VWMQHFNVPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS 157 (622)
Q Consensus 114 vWNE~f~~~v~~~-----~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~ 157 (622)
+|||+|.|++... ...|.|+|||++..+ +++||++.++|++|..
T Consensus 69 ~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 69 LFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999999998642 358999999999887 8999999999998873
No 104
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=2.4e-14 Score=130.90 Aligned_cols=116 Identities=21% Similarity=0.373 Sum_probs=89.1
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+|+|.+|+ |...+. .+.+||||+|+++++..+||++++++.||+|||+|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~--------------------------~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~ 55 (125)
T cd04021 3 QLQITVESAK-LKSNSK--------------------------SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTV 55 (125)
T ss_pred eEEEEEEeeE-CCCCCc--------------------------CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEE
Confidence 5899999999 544432 3458999999998875569999999999999999999
Q ss_pred ecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCe-----eeecccccCCCCCccccCceEEEEE
Q 007000 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-----IEGAFPILNSSRKPCKAGAVLSLSI 185 (622)
Q Consensus 122 ~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~-----~~~W~~L~~~~g~~~k~~G~I~L~l 185 (622)
.+. ..+.|.|+|||++..+ +++||++.++|+++..+.. ...|++|..+.....+..|.+++.+
T Consensus 56 ~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 56 LVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 986 4478999999999886 8999999999999885322 2358888643210123457777654
No 105
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.56 E-value=3.4e-14 Score=129.22 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=85.0
Q ss_pred ceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecC
Q 007000 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISN 109 (622)
Q Consensus 34 ~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~ 109 (622)
++.-...+.|+|+|++|++|++.+. .+.+||||++.+.. ....||+++++
T Consensus 8 l~y~~~~~~L~V~v~~a~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~ 61 (123)
T cd04035 8 LLYDPANSALHCTIIRAKGLKAMDA--------------------------NGLSDPYVKLNLLPGASKATKLRTKTVHK 61 (123)
T ss_pred EEEeCCCCEEEEEEEEeeCCCCCCC--------------------------CCCCCceEEEEEecCCCCCCceeeeeecC
Confidence 3444455789999999999997764 45689999999831 23459999999
Q ss_pred CCCCeeeeEEEEe-cCC---CCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeeccc
Q 007000 110 SESPVWMQHFNVP-VAH---SAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFP 166 (622)
Q Consensus 110 t~nPvWNE~f~~~-v~~---~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~ 166 (622)
+.||+|||+|.|. +.. ....+.|+|||++..++++||++.++|++|..+...+.|+.
T Consensus 62 ~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 62 TRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999999999996 332 13689999999987778899999999999987766665554
No 106
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.56 E-value=5e-14 Score=130.75 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=87.7
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E----------EEeeeeeecC
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A----------VIGRTFVISN 109 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~----------~~~kT~vi~~ 109 (622)
++.|++++|++|+ ++. -|++||||++++.. . ...||+++++
T Consensus 2 ~~~~~~~~A~~L~-~~~--------------------------fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~ 54 (137)
T cd08691 2 SFSLSGLQARNLK-KGM--------------------------FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN 54 (137)
T ss_pred EEEEEEEEeCCCC-Ccc--------------------------CCCCCceEEEEEECCCcccccccccccceeeeeeEcC
Confidence 4789999999998 554 25699999999942 1 1349999999
Q ss_pred CCCCee-eeEEEEecCCCCcEEEEEEEecCCcC----CeeeEeEEEeceeecCC---CeeeecccccCCCCCccccCceE
Q 007000 110 SESPVW-MQHFNVPVAHSAAEVHFVVKDNDFVG----SQIMGAVGIPVEKLCSG---DKIEGAFPILNSSRKPCKAGAVL 181 (622)
Q Consensus 110 t~nPvW-NE~f~~~v~~~~~~L~l~V~D~d~~~----dd~IG~~~i~L~~l~~g---~~~~~W~~L~~~~g~~~k~~G~I 181 (622)
++||+| ||+|.|.+. ..+.|.|+|+|++..+ +++||++.+++++|..+ .....|++|.... ....-.|++
T Consensus 55 tlnP~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-~~s~v~G~~ 132 (137)
T cd08691 55 TINPVWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-PTDHVSGQL 132 (137)
T ss_pred CCCCceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-CCCcEEEEE
Confidence 999999 999999985 3468999999976432 68999999999999854 3467899996432 222234666
Q ss_pred EEEE
Q 007000 182 SLSI 185 (622)
Q Consensus 182 ~L~l 185 (622)
.+.+
T Consensus 133 ~l~~ 136 (137)
T cd08691 133 TFRF 136 (137)
T ss_pred EEEe
Confidence 6543
No 107
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.55 E-value=1.9e-14 Score=130.45 Aligned_cols=97 Identities=26% Similarity=0.371 Sum_probs=81.4
Q ss_pred EEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEE------EeeeeeecCCCCCeeeeEE
Q 007000 46 WVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAV------IGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 46 ~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~------~~kT~vi~~t~nPvWNE~f 119 (622)
..++|++|+..|. .+.+||||+|.+.+.. .+||++++++.||+|||+|
T Consensus 5 ~~i~a~~L~~~d~--------------------------~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f 58 (120)
T cd04048 5 LSISCRNLLDKDV--------------------------LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTF 58 (120)
T ss_pred EEEEccCCCCCCC--------------------------CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEE
Confidence 4588999998775 3568999999996543 4699999999999999999
Q ss_pred EEecCC-CCcEEEEEEEecCC----cC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 120 NVPVAH-SAAEVHFVVKDNDF----VG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 120 ~~~v~~-~~~~L~l~V~D~d~----~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
.|.+.. ..+.|.|+|||++. .+ +++||++.+++++|..+.....|++|.
T Consensus 59 ~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 59 TVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred EEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 998643 34789999999996 55 899999999999999877778899983
No 108
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.54 E-value=6e-14 Score=125.79 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=66.1
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeeeE
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWMQH 118 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPvWNE~ 118 (622)
|.|+|.+|++|+. .+||||++.++. ...+||+++++|+||+|||+
T Consensus 1 L~V~V~~A~~L~~-------------------------------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~ 49 (118)
T cd08686 1 LNVIVHSAQGFKQ-------------------------------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEE 49 (118)
T ss_pred CEEEEEeCCCCCC-------------------------------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceE
Confidence 6899999999962 279999999963 24569999999999999999
Q ss_pred EEEecCCCCcEEEEEEEec-------CCcC-CeeeEeEEEece
Q 007000 119 FNVPVAHSAAEVHFVVKDN-------DFVG-SQIMGAVGIPVE 153 (622)
Q Consensus 119 f~~~v~~~~~~L~l~V~D~-------d~~~-dd~IG~~~i~L~ 153 (622)
|.|++.. .+.|.+.|||+ |..+ ++++|.+.+.|.
T Consensus 50 F~i~l~~-s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 50 FEIELEG-SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEeCC-CCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 9999974 67999999998 3445 789988888774
No 109
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.47 E-value=9.7e-14 Score=170.70 Aligned_cols=118 Identities=19% Similarity=0.389 Sum_probs=98.4
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEE
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f 119 (622)
.|.|.|+|++|+||.. + .+.+||||+|.++++...||++++++.||+|||+|
T Consensus 1979 ~G~L~V~V~~a~nl~~-~---------------------------~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f 2030 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLKQ-S---------------------------MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGF 2030 (2102)
T ss_pred CcceEEEEeecccccc-c---------------------------cCCCCCeEEEEECCCCcccccccCCCCCCCcccce
Confidence 5999999999999982 2 25689999999997644499999999999999999
Q ss_pred EEecCCCC--cEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCce---EEEEEEeec
Q 007000 120 NVPVAHSA--AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAV---LSLSIQYTP 189 (622)
Q Consensus 120 ~~~v~~~~--~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~---I~L~l~f~p 189 (622)
+|.+.++. +.|.|+|||+|.++++.||.++|+|.++..+.....||+|.+ +|+ ..|+ +++.++|.+
T Consensus 2031 ~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~---k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2031 TWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESN---KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred eeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccc---cCCCcceEEEEEEecC
Confidence 97765543 789999999999998899999999999998889999999964 232 1244 888888764
No 110
>PRK05443 polyphosphate kinase; Provisional
Probab=99.47 E-value=6.7e-13 Score=151.79 Aligned_cols=208 Identities=14% Similarity=0.062 Sum_probs=150.5
Q ss_pred HHHHHHHHHHhccc-----EEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCcc
Q 007000 251 CWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~-----~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~ 325 (622)
-|.-+++.|++|.+ +|.++.|.++ . ...+.++|++||++||+|+||+ +.-. ++.
T Consensus 349 SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~-------~---~s~iv~aL~~Aa~~Gk~V~vlv-e~ka----------rfd 407 (691)
T PRK05443 349 SFDPVVEFLRQAAADPDVLAIKQTLYRTS-------K---DSPIVDALIEAAENGKQVTVLV-ELKA----------RFD 407 (691)
T ss_pred CchHHHHHHHHhccCCCeeEEEEEEEEec-------C---CHHHHHHHHHHHHcCCEEEEEE-ccCc----------ccc
Confidence 68889999999987 8999999442 2 2889999999999999999997 6332 111
Q ss_pred CCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCC
Q 007000 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (622)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H 405 (622)
...+..+.+.|+++|++|.+-.+ .+..|.|+++||+..++ +-.+++++|+.|+....
T Consensus 408 e~~n~~~~~~L~~aGv~V~y~~~----------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~s------ 464 (691)
T PRK05443 408 EEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPKT------ 464 (691)
T ss_pred HHHHHHHHHHHHHcCCEEEEccC----------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcch------
Confidence 22445677889999999976311 24599999999983221 12239999999998743
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeC-hHHHHHHHHHHHHHhhccCCCCcccccCCCccchhhccc
Q 007000 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDG-PAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLER 484 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~G-pav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (622)
...|.|+++.... ..+.++...|...|....... +
T Consensus 465 ---------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~----~------------- 500 (691)
T PRK05443 465 ---------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK----L------------- 500 (691)
T ss_pred ---------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc----c-------------
Confidence 2357899999554 679999999999876422110 0
Q ss_pred CcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCcccccccccccccccchhHHHHHHHHHHHHccc----eE
Q 007000 485 IPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQH----FI 560 (622)
Q Consensus 485 ~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~----~I 560 (622)
. .++- +|.. .+..+.+.+.+.|.+|++ +|
T Consensus 501 -~---------------------~l~~------------sP~~-------------~~~~l~~~i~~ei~~Ak~G~~a~I 533 (691)
T PRK05443 501 -R---------------------KLLV------------SPFT-------------LRERLLELIDREIANARAGKPARI 533 (691)
T ss_pred -c---------------------EEee------------cCcc-------------HHHHHHHHHHHHHHHHhcCCCCEE
Confidence 0 0000 0111 135799999999999999 99
Q ss_pred EEEeccccccccCcccc-----cCcCCcccC----------chhhcccee
Q 007000 561 YIENQYFLGSSFNWDSH-----RDLGESICD----------NEQMKDVNI 595 (622)
Q Consensus 561 yIenqYFip~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~ 595 (622)
+|.++| +|++.+.++| +++.+++++ |+. +|+..
T Consensus 534 ~ik~n~-l~d~~ii~aL~~As~~GV~V~liVRGiC~l~pgipg~-sd~i~ 581 (691)
T PRK05443 534 IAKMNS-LVDPQIIDALYEASQAGVKIDLIVRGICCLRPGVPGL-SENIR 581 (691)
T ss_pred EEEcCC-CCCHHHHHHHHHHHHCCCeEEEEEecccccCCCCCCC-CCCEE
Confidence 999999 6677777755 777888888 887 66633
No 111
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.42 E-value=2.1e-12 Score=147.01 Aligned_cols=210 Identities=14% Similarity=0.072 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhccc-----EEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCcc
Q 007000 251 CWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~-----~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~ 325 (622)
-|..+++.|++|.+ +|.++.|.+ .. ...|.++|.+||++|++|++|+ |---.+ -
T Consensus 340 Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~-------~~---~s~ii~aL~~Aa~~Gk~V~v~v-eLkArf----------d 398 (672)
T TIGR03705 340 SFDPVVEFLRQAAEDPDVLAIKQTLYRT-------SK---DSPIIDALIEAAENGKEVTVVV-ELKARF----------D 398 (672)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEEEEe-------cC---CcHHHHHHHHHHHcCCEEEEEE-Eehhhc----------c
Confidence 68889999999987 899999943 22 2889999999999999999998 721110 0
Q ss_pred CCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCC
Q 007000 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (622)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H 405 (622)
...+..+.+.|+++|++|.+- . ..++.|+|+++||.+.++ +-.+.+++|.-|+....
T Consensus 399 e~~ni~wa~~le~aG~~viyg--~--------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~t------ 455 (672)
T TIGR03705 399 EEANIRWARRLEEAGVHVVYG--V--------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPKT------ 455 (672)
T ss_pred chhhHHHHHHHHHcCCEEEEc--C--------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCcc------
Confidence 113456777899999999882 1 125799999999973211 12346677766665421
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeE-EeChHHHHHHHHHHHHHhhccCCCCcccccCCCccchhhccc
Q 007000 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCR-IDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLER 484 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~r-i~Gpav~dl~~~F~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (622)
...|+|+++. ..+.++.|+...|...|....... + +.
T Consensus 456 ---------------------------a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~----~-----------~~ 493 (672)
T TIGR03705 456 ---------------------------ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK----F-----------KH 493 (672)
T ss_pred ---------------------------cccccceeEEEeChHHHHHHHHHHHHhhCCCcchh----h-----------HH
Confidence 2468999999 788899999999999876422110 0 00
Q ss_pred CcccccCccccCCCCCCCCcccceEeeeccccccCCCCCCCcccccccccccccccchhHHHHHHHHHHHHccc----eE
Q 007000 485 IPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQH----FI 560 (622)
Q Consensus 485 ~p~~~~~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~~~~P~~~~~~~~~~~~~~~~e~~I~~ay~~aI~~A~~----~I 560 (622)
+ -+ +|.. .+..+.+.+.+.|.+|++ +|
T Consensus 494 l-------------------------~~-----------~P~~-------------~~~~~~~~i~~ei~~Ak~g~~~~I 524 (672)
T TIGR03705 494 L-------------------------LV-----------SPFT-------------LRKRLLELIDREIENARAGKPARI 524 (672)
T ss_pred H-------------------------Hh-----------Ccch-------------HHHHHHHHHHHHHHHHHcCCCCEE
Confidence 0 00 1211 135789999999999999 99
Q ss_pred EEEeccccccccCcccc-----cCcCCcccC----------chhhccceeEE
Q 007000 561 YIENQYFLGSSFNWDSH-----RDLGESICD----------NEQMKDVNISI 597 (622)
Q Consensus 561 yIenqYFip~~~~~~~~-----~~~~~~~~~----------~~~~~~~~~~~ 597 (622)
||.+|| +|++.+..+| +++.+++++ |+. +|+....
T Consensus 525 ~ik~n~-l~D~~ii~aL~~As~aGV~V~LivRGiCcL~pgipg~-sd~i~v~ 574 (672)
T TIGR03705 525 IAKMNS-LVDPDLIDALYEASQAGVKIDLIVRGICCLRPGVPGL-SENIRVR 574 (672)
T ss_pred EEEcCC-CCCHHHHHHHHHHHHCCCeEEEEEecccccCCCCCCC-CCCEEEE
Confidence 999999 6677666655 677788888 888 6664443
No 112
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.40 E-value=1.4e-12 Score=116.24 Aligned_cols=87 Identities=26% Similarity=0.422 Sum_probs=71.4
Q ss_pred EEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE-----EEeeeeeecCCCCCeeeeEE
Q 007000 45 IWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA-----VIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 45 v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~-----~~~kT~vi~~t~nPvWNE~f 119 (622)
+-.++|++|+.+|. .+++||||+|++.+. ...||+++++++||+|| +|
T Consensus 4 ~~~i~a~~L~~~d~--------------------------~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f 56 (110)
T cd04047 4 ELQFSGKKLDKKDF--------------------------FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PF 56 (110)
T ss_pred EEEEEeCCCCCCCC--------------------------CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EE
Confidence 44569999998875 356899999998542 34699999999999999 78
Q ss_pred EEecCC-----CCcEEEEEEEecCCcC-CeeeEeEEEeceeecCC
Q 007000 120 NVPVAH-----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG 158 (622)
Q Consensus 120 ~~~v~~-----~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g 158 (622)
.|++.. ....|.|+|||++..+ +++||++.+++++|..+
T Consensus 57 ~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 57 TIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred EEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 887532 2478999999999887 89999999999998743
No 113
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.40 E-value=5.1e-13 Score=146.64 Aligned_cols=126 Identities=23% Similarity=0.282 Sum_probs=108.9
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
..|.|+|.+|+||+..+. .|..||||.|.++++.+.||.++.+++.|.|.|+|+
T Consensus 5 ~sl~vki~E~knL~~~~~--------------------------~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~ 58 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGP--------------------------SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFY 58 (800)
T ss_pred cceeEEEeecccCCCCCC--------------------------CCCcCcceEEeecchhhhhhhhhhhhcCCccccceE
Confidence 568999999999998765 567999999999999888999999999999999999
Q ss_pred EecCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeeccccc
Q 007000 121 VPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVENM 193 (622)
Q Consensus 121 ~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~~~l 193 (622)
|.++.....|.|.|||.|...|+.||++.|.-++|...+..+.|+.|..-+... .-.|++||.+++.+....
T Consensus 59 ~~iP~~F~~l~fYv~D~d~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 59 FEIPRTFRYLSFYVWDRDLKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQS 130 (800)
T ss_pred EecCcceeeEEEEEeccccccccccceeeeeHHHHhhCCCCccceeccccCCCh-hhceeEEEEEEeccccCC
Confidence 999988899999999999444999999999999999877889999996422221 245899999999986653
No 114
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.39 E-value=1.9e-12 Score=144.41 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=112.1
Q ss_pred CCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhc
Q 007000 219 GGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQ 298 (622)
Q Consensus 219 g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~ 298 (622)
+..++++.+|++ ...+.+...+.++|.+||++|+|++.. +.++ ..+.++|+.||+
T Consensus 302 ~~~~qi~~sgP~---------------~~~~~~~~~~~~~I~~A~~~I~I~tpY------fip~----~~i~~aL~~Aa~ 356 (483)
T PRK01642 302 GHTVQVIASGPG---------------DPEETIHQFLLTAIYSARERLWITTPY------FVPD----EDLLAALKTAAL 356 (483)
T ss_pred CceEEEEeCCCC---------------ChhhHHHHHHHHHHHHhccEEEEEcCC------cCCC----HHHHHHHHHHHH
Confidence 345777776664 223346788999999999999999852 4434 689999999999
Q ss_pred CCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccC
Q 007000 299 EGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDAD 378 (622)
Q Consensus 299 rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~ 378 (622)
|||+||||+ +......+ .........+.|.++||++..+.+. ..|.|++|||+
T Consensus 357 rGV~Vril~-p~~~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y~~~-----------------~~HaK~~ivD~- 409 (483)
T PRK01642 357 RGVDVRIII-PSKNDSLL--------VFWASRAFFTELLEAGVKIYRYEGG-----------------LLHTKSVLVDD- 409 (483)
T ss_pred cCCEEEEEe-CCCCCcHH--------HHHHHHHHHHHHHHcCCEEEEeCCC-----------------ceEeEEEEECC-
Confidence 999999997 65332111 1111234456677899999876432 27999999999
Q ss_pred CccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHH
Q 007000 379 AGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEE 457 (622)
Q Consensus 379 ~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpa-v~dl~~~F~~ 457 (622)
+++++|+.|+....+.. =+++.+.+.+|. +.++.+.|.+
T Consensus 410 -------~~~~vGS~N~d~rS~~~---------------------------------N~E~~~~i~d~~~~~~l~~~f~~ 449 (483)
T PRK01642 410 -------ELALVGTVNLDMRSFWL---------------------------------NFEITLVIDDTGFAADLAAMQED 449 (483)
T ss_pred -------CEEEeeCCcCCHhHHhh---------------------------------hhcceEEEECHHHHHHHHHHHHH
Confidence 89999999997644421 147788899975 8999999999
Q ss_pred HHhhc
Q 007000 458 RWLKA 462 (622)
Q Consensus 458 ~W~~~ 462 (622)
+|...
T Consensus 450 d~~~s 454 (483)
T PRK01642 450 YFARS 454 (483)
T ss_pred HHHhC
Confidence 99864
No 115
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.35 E-value=4.2e-12 Score=106.24 Aligned_cols=80 Identities=35% Similarity=0.616 Sum_probs=68.4
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeecCCCCCeeeeEE
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---AVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~---~~~~kT~vi~~t~nPvWNE~f 119 (622)
|+|+|++|++|+..+. .+..||||++.+.+ .. .+|++++++.+|.|||+|
T Consensus 1 L~v~I~~a~~L~~~~~--------------------------~~~~~~yv~v~~~~~~~~~-~~T~~~~~~~~P~w~e~~ 53 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDS--------------------------NGKPDPYVRVSVNGSESTK-YKTKVKKNTSNPVWNEEF 53 (85)
T ss_dssp EEEEEEEEESSSSSST--------------------------TSSBEEEEEEEEETTTCEE-EEECCBSSBSSEEEEEEE
T ss_pred CEEEEEEEECCCCccc--------------------------CCcccccceeecceeeeee-eeeeeeeccccceeeeee
Confidence 7899999999997653 45689999999976 34 499999999999999999
Q ss_pred EEecCCC-CcEEEEEEEecCCcC-CeeeEeEE
Q 007000 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVG 149 (622)
Q Consensus 120 ~~~v~~~-~~~L~l~V~D~d~~~-dd~IG~~~ 149 (622)
.|++... ...|.|.|||.+..+ +++||++.
T Consensus 54 ~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 54 EFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 9996544 367999999999888 88999874
No 116
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.34 E-value=6e-12 Score=137.13 Aligned_cols=138 Identities=19% Similarity=0.163 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCCh
Q 007000 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (622)
Q Consensus 250 ~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~ 329 (622)
.+...+.++|.+|+++|+|++.- ++++ ..+.++|+.|++|||+|+||+ +..+...+ .....
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tpY------f~p~----~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~--------~~~a~ 266 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANAY------FFPG----YRLLRALRNAARRGVRVRLIL-QGEPDMPI--------VRVGA 266 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEecC------cCCC----HHHHHHHHHHHHCCCEEEEEe-CCCCCcHH--------HHHHH
Confidence 46788999999999999999741 4443 789999999999999999997 65433211 11122
Q ss_pred HHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCcc
Q 007000 330 EETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFK 409 (622)
Q Consensus 330 ~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~ 409 (622)
......|.++||++..+.. ...|.|++|||+ ++++||+.|+....+.-
T Consensus 267 ~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~--------~~~~vGS~Nld~rS~~l------- 314 (411)
T PRK11263 267 RLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDD--------HWATVGSSNLDPLSLSL------- 314 (411)
T ss_pred HHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECC--------CEEEEeCCcCCHHHhhh-------
Confidence 3456678889999987532 238999999999 89999999997643311
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHHhhccC
Q 007000 410 TLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLKASK 464 (622)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpa-v~dl~~~F~~~W~~~~~ 464 (622)
=.++.+.|.+|. +.+|+..|.+++...+.
T Consensus 315 --------------------------N~E~~~~i~d~~~a~~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 315 --------------------------NLEANLIIRDRAFNQTLRDNLNGLIAADCQ 344 (411)
T ss_pred --------------------------hhhcCEEEeCHHHHHHHHHHHHHHHHhhCE
Confidence 136678888877 68899999999974444
No 117
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.9e-12 Score=138.57 Aligned_cols=124 Identities=23% Similarity=0.342 Sum_probs=98.7
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~ 120 (622)
..++++|++|++|..+|. .|++||||.+.+++.+. ||+++...+||+|||.|.
T Consensus 295 akitltvlcaqgl~akdk--------------------------tg~sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfh 347 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDK--------------------------TGKSDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFH 347 (1283)
T ss_pred eeeEEeeeecccceeccc--------------------------CCCCCCcEEEeecccch-hhHhhhhccchhhhhhee
Confidence 468999999999987764 78899999999999888 999999999999999999
Q ss_pred EecCCCCcEEEEEEEecCC---------c---CCeeeEeEEEeceeecCCCeeeecccccCCCCC-ccccCceEEEEEEe
Q 007000 121 VPVAHSAAEVHFVVKDNDF---------V---GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK-PCKAGAVLSLSIQY 187 (622)
Q Consensus 121 ~~v~~~~~~L~l~V~D~d~---------~---~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~-~~k~~G~I~L~l~f 187 (622)
|.+++....|++.|||.|. + +|||+|+..|.++.|. ..++.||+|..+-.+ ..++...+|++++.
T Consensus 348 fechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisvei 425 (1283)
T KOG1011|consen 348 FECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVEI 425 (1283)
T ss_pred eeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEEE
Confidence 9999888999999999772 1 3889999999998775 347889999654333 23333455666655
Q ss_pred eccccc
Q 007000 188 TPVENM 193 (622)
Q Consensus 188 ~p~~~l 193 (622)
..-.++
T Consensus 426 kgeekv 431 (1283)
T KOG1011|consen 426 KGEEKV 431 (1283)
T ss_pred cCcccc
Confidence 543333
No 118
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=142.14 Aligned_cols=134 Identities=23% Similarity=0.368 Sum_probs=107.8
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCC
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSES 112 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~n 112 (622)
+...+ |+|.|+|.+|++|+..|.+ | ++++|||+++.+.+...|||++++++.|
T Consensus 431 s~~aI---GVv~vkI~sa~~lk~~d~~------------------i------~~~vDpyit~~~~~r~~gkT~v~~nt~n 483 (1227)
T COG5038 431 SGTAI---GVVEVKIKSAEGLKKSDST------------------I------NGTVDPYITVTFSDRVIGKTRVKKNTLN 483 (1227)
T ss_pred cCCee---EEEEEEEeeccCccccccc------------------c------cCCCCceEEEEeccccCCccceeeccCC
Confidence 44455 9999999999999977631 1 6779999999998888899999999999
Q ss_pred CeeeeEEEEecCCCCcEEEEEEEecCCc-CCeeeEeEEEeceeecCCCe-eeecccccCCCCCccccCceEEEEEEeecc
Q 007000 113 PVWMQHFNVPVAHSAAEVHFVVKDNDFV-GSQIMGAVGIPVEKLCSGDK-IEGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (622)
Q Consensus 113 PvWNE~f~~~v~~~~~~L~l~V~D~d~~-~dd~IG~~~i~L~~l~~g~~-~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~ 190 (622)
|+|||+|++++....+.|.|+|||.+.. +|+.+|.+.++|..|...+. .+.-+.++ .+.+ ..|+++.+++|.|.
T Consensus 484 PvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k---~vGrL~yDl~ffp~ 559 (1227)
T COG5038 484 PVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTK---NVGRLTYDLRFFPV 559 (1227)
T ss_pred ccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCc---cceEEEEeeeeecc
Confidence 9999999999998889999999996554 48999999999988885433 33344443 2333 45899999999998
Q ss_pred ccccccc
Q 007000 191 ENMSLYY 197 (622)
Q Consensus 191 ~~l~~~~ 197 (622)
.+...-.
T Consensus 560 ~e~k~~~ 566 (1227)
T COG5038 560 IEDKKEL 566 (1227)
T ss_pred cCCcccc
Confidence 7654433
No 119
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.27 E-value=2.9e-11 Score=102.80 Aligned_cols=99 Identities=37% Similarity=0.569 Sum_probs=83.2
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|.|.|++|++|+.... ....||||++.+.+...++|+++.++.||.|||.|.|+
T Consensus 1 l~v~i~~~~~l~~~~~--------------------------~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~ 54 (102)
T cd00030 1 LRVTVIEARNLPAKDL--------------------------NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFP 54 (102)
T ss_pred CEEEEEeeeCCCCcCC--------------------------CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEE
Confidence 5789999999986432 34589999999988444599999999999999999999
Q ss_pred cCC-CCcEEEEEEEecCCcC-CeeeEeEEEeceeec-CCCeeeecccc
Q 007000 123 VAH-SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC-SGDKIEGAFPI 167 (622)
Q Consensus 123 v~~-~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~-~g~~~~~W~~L 167 (622)
+.. ....+.|.|+|.+..+ +.+||++.+++.++. .......|++|
T Consensus 55 ~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 55 VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 987 5578999999988776 789999999999988 66667778765
No 120
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.26 E-value=2.8e-11 Score=109.82 Aligned_cols=124 Identities=22% Similarity=0.395 Sum_probs=85.8
Q ss_pred HHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCccc-ccccccccCccCCChHHHH
Q 007000 255 VYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSR-SILGYKTDGIMSTNDEETR 333 (622)
Q Consensus 255 l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~-~~~~~~~~~~~~~~~~~~~ 333 (622)
|.++|++|+++|+|++|.| . ...+.++|..++++||+|+||+ |..... ..... .......
T Consensus 1 l~~~i~~A~~~i~i~~~~~-------~----~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~~-------~~~~~~~ 61 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYI-------T----DPDIIKALLDAAKRGVKVRIIV-DSNQDDSEAINL-------ASLKELR 61 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCSH-------HHHHHHH
T ss_pred CHHHHhccCCEEEEEEEec-------C----cHHHHHHHHHHHHCCCeEEEEE-CCCccccchhhh-------HHHHHHH
Confidence 5789999999999999943 2 2668999999999999999997 653220 00000 0112333
Q ss_pred hhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCcccccc
Q 007000 334 RFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLET 413 (622)
Q Consensus 334 ~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~ 413 (622)
+.+...|+++. .+.|.|+++||+ .++++||.|++...|.
T Consensus 62 ~~~~~~~i~v~---------------------~~~H~K~~i~d~--------~~~iiGS~N~t~~~~~------------ 100 (126)
T PF13091_consen 62 ELLKNAGIEVR---------------------NRLHAKFYIIDD--------KVAIIGSANLTSSSFR------------ 100 (126)
T ss_dssp HHHHHTTHCEE---------------------S-B--EEEEETT--------TEEEEES--CSCCCSC------------
T ss_pred hhhccceEEEe---------------------cCCCcceEEecC--------ccEEEcCCCCCcchhc------------
Confidence 44466777655 148999999998 7999999999987663
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHH
Q 007000 414 VHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERW 459 (622)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpa-v~dl~~~F~~~W 459 (622)
..++..+.+++|. +.++.+.|.+.|
T Consensus 101 ---------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 ---------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ---------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ---------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2369999999986 999999999989
No 121
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.26 E-value=1.3e-11 Score=142.48 Aligned_cols=136 Identities=21% Similarity=0.357 Sum_probs=108.4
Q ss_pred CCCcccCcceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeee
Q 007000 26 PFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTF 105 (622)
Q Consensus 26 ~~~~~~~~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~ 105 (622)
|.++..-..-++...|.|.|.+.+|+||+..|. +|.+||||++.+.+++..||+
T Consensus 1025 Pv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~--------------------------ng~sDpfv~~~ln~k~vyktk 1078 (1227)
T COG5038 1025 PVPVKLPPVEMVENSGYLTIMLRSGENLPSSDE--------------------------NGYSDPFVKLFLNEKSVYKTK 1078 (1227)
T ss_pred ecccccCcceeecccCcEEEEEeccCCCccccc--------------------------CCCCCceEEEEecceeccccc
Confidence 335566677788889999999999999998775 788999999999998777999
Q ss_pred eecCCCCCeeeeEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEE
Q 007000 106 VISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSL 183 (622)
Q Consensus 106 vi~~t~nPvWNE~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L 183 (622)
++++++||+|||+|.+++.... ..+.+.|+|||... +|.||++.++|+.|..+.....-.+|..+ . .....|+++.
T Consensus 1079 v~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk-~-~~~~~g~~~~ 1156 (1227)
T COG5038 1079 VVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK-T-FIVLDGTLHP 1156 (1227)
T ss_pred chhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCc-c-eEecccEeec
Confidence 9999999999999999997544 78999999999887 89999999999999876655555566322 2 1123455555
Q ss_pred EEEeec
Q 007000 184 SIQYTP 189 (622)
Q Consensus 184 ~l~f~p 189 (622)
...|.+
T Consensus 1157 ~~~~r~ 1162 (1227)
T COG5038 1157 GFNFRS 1162 (1227)
T ss_pred ceecch
Confidence 555544
No 122
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.24 E-value=5.6e-11 Score=101.72 Aligned_cols=93 Identities=38% Similarity=0.592 Sum_probs=78.5
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeecCCCCCeeeeEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--VIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~--~~~kT~vi~~t~nPvWNE~f 119 (622)
+|.|+|++|++|+..+. ....+|||++.+... ..++|+++.++.||.|||+|
T Consensus 1 ~l~i~i~~~~~l~~~~~--------------------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~ 54 (101)
T smart00239 1 TLTVKIISARNLPKKDK--------------------------KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETF 54 (101)
T ss_pred CeEEEEEEeeCCCCCCC--------------------------CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceE
Confidence 37899999999986542 235799999999875 45599999999999999999
Q ss_pred EEecCCC-CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCe
Q 007000 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK 160 (622)
Q Consensus 120 ~~~v~~~-~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~ 160 (622)
.|++... .+.|.|+|||.+..+ +.++|.+.+++.++..+..
T Consensus 55 ~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 55 EFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 9999877 689999999988776 7899999999998876543
No 123
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.23 E-value=5.9e-11 Score=129.93 Aligned_cols=151 Identities=14% Similarity=0.194 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcccEEEEEEEeecceeeEEeCC-CCchhHHHHHHh-hhcCCCeEEEEEeCCCcccccccccccCccCCCh
Q 007000 252 WQDVYDAINQARRLIYITGWSVYHTVRLVRDG-SNTLMLGDLLKI-KSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (622)
Q Consensus 252 f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~-~~g~~l~~~L~~-aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~ 329 (622)
..+++.+|.+||++|+|++..|-|+++...+. .-...+.++|++ |++|||+||||+ +++.+........
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLv---------p~~~d~~~~~~a~ 290 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLI---------SCWQRSSFIMRNF 290 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCEEEEEE---------eccCCCCccHHHH
Confidence 58899999999999999999887774433222 234789999996 667999999998 1111111111111
Q ss_pred HHHHhhhcCCCeEEE--e--cCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCC
Q 007000 330 EETRRFFKHSSVQVL--L--CPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (622)
Q Consensus 330 ~~~~~~l~~~gv~v~--~--~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H 405 (622)
....+.|..+|+++. . +|...+ ..+...-+|.|++|||+ +|+||+.|+...++...
T Consensus 291 ~~~l~~L~~~gv~I~Vk~y~~p~~~~---------~~~~~~f~HaK~~vvD~---------~a~IGTsN~D~rsf~~n-- 350 (424)
T PHA02820 291 LRSIAMLKSKNINIEVKLFIVPDADP---------PIPYSRVNHAKYMVTDK---------TAYIGTSNWTGNYFTDT-- 350 (424)
T ss_pred HHHHHHHhccCceEEEEEEEcCcccc---------cCCcceeeeeeEEEEcc---------cEEEECCcCCHHHHhcc--
Confidence 223444566776663 2 342110 11123459999999997 49999999998877421
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeC----hHHHHHHHHHHHHHhhc
Q 007000 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDG----PAAYDILTNFEERWLKA 462 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~G----pav~dl~~~F~~~W~~~ 462 (622)
..+.+-+.. +.+.+|+..|.++|+..
T Consensus 351 -------------------------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~ 380 (424)
T PHA02820 351 -------------------------------CGVSINITPDDGLGLRQQLEDIFIRDWNSK 380 (424)
T ss_pred -------------------------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCC
Confidence 355666754 48999999999999964
No 124
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.3e-11 Score=132.98 Aligned_cols=115 Identities=30% Similarity=0.444 Sum_probs=94.3
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeec
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVIS 108 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~--~~~~kT~vi~ 108 (622)
+|+-+..+|.|+|.|++|++|+.+|. ++.+||||++.+- + .+..||.+.+
T Consensus 290 sL~Y~p~~g~ltv~v~kar~L~~~~~--------------------------~~~~d~~Vk~~l~~~~~~~~kkkT~~~~ 343 (421)
T KOG1028|consen 290 SLCYLPTAGRLTVVVIKARNLKSMDV--------------------------GGLSDPYVKVTLLDGDKRLSKKKTSVKK 343 (421)
T ss_pred EEEeecCCCeEEEEEEEecCCCcccC--------------------------CCCCCccEEEEEecCCceeeeeeeeccc
Confidence 46777788999999999999998875 6778999999993 2 2344899999
Q ss_pred CCCCCeeeeEEEEecCCCC---cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCcc
Q 007000 109 NSESPVWMQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (622)
Q Consensus 109 ~t~nPvWNE~f~~~v~~~~---~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~ 175 (622)
++.||+|||+|.|.++... ..|.|+|||+|.++ +++||.+.+.... .+....+|..+....+++.
T Consensus 344 ~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 344 KTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred CCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 9999999999999886432 46889999999998 7899998888754 4566789999987776654
No 125
>PLN02223 phosphoinositide phospholipase C
Probab=99.21 E-value=9.1e-11 Score=128.95 Aligned_cols=112 Identities=27% Similarity=0.419 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPvW 115 (622)
..+|.|+|+.|++++ .+...+ . +....+||||+|.+.+ ....||++..|+.||+|
T Consensus 408 ~~~L~V~Visgq~~~-~~~~k~-~-------------------~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvW 466 (537)
T PLN02223 408 VKILKVKIYMGDGWI-VDFKKR-I-------------------GRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTW 466 (537)
T ss_pred ceEEEEEEEEccccc-CCcccc-c-------------------CCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCcee
Confidence 367999999999986 222000 0 0123479999999953 23337888888999999
Q ss_pred eeEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCcc
Q 007000 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (622)
Q Consensus 116 NE~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~ 175 (622)
||+|.|++..+. ..|+|.|+|+|... ++++|++.+|++.|+.|. ++.+|.+..|++.
T Consensus 467 ne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l 525 (537)
T PLN02223 467 GEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKAC 525 (537)
T ss_pred cceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCC
Confidence 999999987665 67899999999866 889999999999999885 5789998888865
No 126
>PLN02952 phosphoinositide phospholipase C
Probab=99.14 E-value=3.3e-10 Score=126.99 Aligned_cols=121 Identities=19% Similarity=0.322 Sum_probs=91.2
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPvWN 116 (622)
.+|.|+|+.+++|+.. . ... .+ +.-..+||||+|.+.+ ....||+++.++.||+||
T Consensus 470 ~~L~V~VisGq~l~lp-~-~~~---~~---------------~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWn 529 (599)
T PLN02952 470 KTLKVKVYLGDGWRLD-F-SHT---HF---------------DSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWN 529 (599)
T ss_pred ceEEEEEEECcccCCC-C-ccc---cC---------------CccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccC
Confidence 5799999999998632 1 000 00 0123369999999953 233399999999999999
Q ss_pred eEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 117 E~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
|+|.|++..+. ..|.|.|+|+|..+ ++++|++.+|++.|..|. .|++|.+..|.+. +..+|-++|
T Consensus 530 E~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l---~~a~Llv~f 596 (599)
T PLN02952 530 EEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKL---KNVRLLMRF 596 (599)
T ss_pred CeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCC---CCEEEEEEE
Confidence 99999876554 67899999999876 889999999999999886 5999988888754 234555554
No 127
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.10 E-value=7.1e-10 Score=116.99 Aligned_cols=158 Identities=15% Similarity=0.256 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChH
Q 007000 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDE 330 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~ 330 (622)
-+++|+..|+.|++.|+|.....-|......+ ..-..|.++|++||-|||+||+|+-+..-+. +. ..+++. ...
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~--~~--m~~~L~-SLq 350 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HRFWEIDDAIRRAAVRGVKVRLLVSCWKHSE--PS--MFRFLR-SLQ 350 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-cchhhhhHHHHHHhhcceEEEEEEeccCCCC--ch--HHHHHH-HHH
Confidence 48999999999999999999888888755555 4445999999999999999999983222110 00 000000 001
Q ss_pred HHHhhhcCCCeEEEec--CCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCc
Q 007000 331 ETRRFFKHSSVQVLLC--PRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (622)
Q Consensus 331 ~~~~~l~~~gv~v~~~--~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~ 408 (622)
.....+++..|+|+++ |.... ..++...++|.|++|-+. .||+|..|++.+||-..
T Consensus 351 ~l~~~~~~~~iqvk~f~VP~~~~--------~~ip~~Rv~HnKymVTe~---------aayIGTSNws~dYf~~T----- 408 (456)
T KOG3603|consen 351 DLSDPLENGSIQVKFFIVPQTNI--------EKIPFARVNHNKYMVTES---------AAYIGTSNWSGDYFTST----- 408 (456)
T ss_pred HhcCccccCceEEEEEEeCCCcc--------ccCchhhhccceeEEeec---------ceeeeccCCCccceecc-----
Confidence 1122234566888876 33221 123456789999999995 89999999999998531
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCceeeeeE-----EeChHHHHHHHHHHHHHhhccC
Q 007000 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCR-----IDGPAAYDILTNFEERWLKASK 464 (622)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~r-----i~Gpav~dl~~~F~~~W~~~~~ 464 (622)
. -+++. -.|+++.+|..+|.++|+....
T Consensus 409 ----------------------a------G~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 409 ----------------------A------GTAIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred ----------------------C------ceEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 0 11222 3468999999999999997644
No 128
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.07 E-value=8.3e-10 Score=123.64 Aligned_cols=122 Identities=22% Similarity=0.329 Sum_probs=90.6
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPvWN 116 (622)
.+|.|+|+.+++++.... +. +.+....+||||+|.+.+ ....||++..|+.||+||
T Consensus 469 ~~L~V~VisGq~~~l~~~--k~------------------~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wn 528 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFK--KT------------------HFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWN 528 (598)
T ss_pred cEEEEEEEEccCccCCCc--cc------------------cCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccC
Confidence 579999999998753210 00 001123479999999943 333489999999999999
Q ss_pred eEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEE
Q 007000 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (622)
Q Consensus 117 E~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~ 186 (622)
|+|.|++..+. ..|+|.|+|+|... ++++|++.+|+++|..|. +..+|.+..|.+.. ..++.+..+
T Consensus 529 eef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~ 596 (598)
T PLN02230 529 KEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFE 596 (598)
T ss_pred CeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEE
Confidence 99999876555 78999999999865 899999999999999885 46799888887643 234444443
No 129
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.06 E-value=7.2e-10 Score=102.04 Aligned_cols=94 Identities=21% Similarity=0.180 Sum_probs=74.8
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCC--CCCcEEEEEECC--EEEeeeeeecCCCC--Cee
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKI--TSDPYVTVSICG--AVIGRTFVISNSES--PVW 115 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~DPYv~V~l~~--~~~~kT~vi~~t~n--PvW 115 (622)
.|||.|.+|++++..+... .| .+||||++.+.. ....+|.|..+++| |+|
T Consensus 1 eLRViIw~~~~v~~~~~~~------------------------~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~F 56 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNI------------------------TGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNF 56 (133)
T ss_pred CEEEEEEECcCCccccccc------------------------CCccccCeEEEEEEccCcccccccceEEecCCCCcEE
Confidence 3899999999977544210 23 489999999965 34459999999999 999
Q ss_pred eeEEEEecCC---------------------C---CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCC
Q 007000 116 MQHFNVPVAH---------------------S---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD 159 (622)
Q Consensus 116 NE~f~~~v~~---------------------~---~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~ 159 (622)
|+.|.|++.. . ...|.|.|||.|.++ |++||++.++|..+..+.
T Consensus 57 NwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 57 NWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred eEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 9999887643 1 256889999999987 899999999999887553
No 130
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.05 E-value=5.8e-10 Score=124.86 Aligned_cols=121 Identities=26% Similarity=0.382 Sum_probs=94.2
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeee-ecCCCCCeee
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFV-ISNSESPVWM 116 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~v-i~~t~nPvWN 116 (622)
+|.|+|+++++++..-- + ..++..+||||.|++.+ ....+|++ ..|+.||.|+
T Consensus 617 tL~IkI~sGq~~~~~~~--~--------------------~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~ 674 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFG--K--------------------TKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWD 674 (746)
T ss_pred eeEEEEEecCcccCCCC--C--------------------CcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccC
Confidence 79999999997764321 0 11145689999999954 33459995 5569999999
Q ss_pred eEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEee
Q 007000 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (622)
Q Consensus 117 E~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~ 188 (622)
|+|+|++..+. .-|+|.|+|+|..+ |||+|+.++|+++|..|. +.++|++..|+.. ...++.+.+.+.
T Consensus 675 e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 675 EEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 99999987766 78899999999988 999999999999999885 3478888888765 334666666654
No 131
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.03 E-value=1.8e-09 Score=120.86 Aligned_cols=123 Identities=21% Similarity=0.342 Sum_probs=90.4
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPvWN 116 (622)
.+|.|+|+.+++++-... +. ..++....||||+|.+.+ ....||+++.++.||+||
T Consensus 452 ~~L~V~Visgq~~~l~~~--~~------------------~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~ 511 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFR--HT------------------HFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWD 511 (581)
T ss_pred ceEEEEEEEcccccCCCC--cc------------------ccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccC
Confidence 579999999987531100 00 001123579999999953 333499999999999999
Q ss_pred eEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEe
Q 007000 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 117 E~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
|+|.|++..+. ..|+|.|+|+|..+ +++||++.+|++.|+.|. +..+|.+..|.+.. ..++.+...|
T Consensus 512 e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 512 EVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred CeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 99999876555 78899999998766 889999999999999885 46799888887643 2355544443
No 132
>PLN02228 Phosphoinositide phospholipase C
Probab=98.99 E-value=3.1e-09 Score=118.55 Aligned_cols=125 Identities=22% Similarity=0.313 Sum_probs=92.8
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee-
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW- 115 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~~t~nPvW- 115 (622)
.+|.|+|++++.|+- +.... ..+.....||||+|.+.+ ....||+++.++.||+|
T Consensus 431 ~~L~I~ViSGq~l~l-p~~~~-------------------~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~ 490 (567)
T PLN02228 431 TTLKVKIYTGEGWDL-DFHLT-------------------HFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWG 490 (567)
T ss_pred ceEEEEEEECCccCC-CCCCC-------------------CCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceEC
Confidence 579999999998841 11000 001123479999999943 22239999999999999
Q ss_pred eeEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeec
Q 007000 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 116 NE~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
||+|.|++..+. ..|+|.|+|+|..+ +++||++.+|++.|+.|. +.++|++..|+.. ...++.+.+.+.+
T Consensus 491 ~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~ 562 (567)
T PLN02228 491 NDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDP 562 (567)
T ss_pred CCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcC
Confidence 999999876554 78899999998765 889999999999999885 4679988888764 2346666666654
No 133
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.94 E-value=3e-09 Score=92.79 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=71.0
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
|.|+|..|+|+...+... ..+.+||||.|++++...+||++ +.||.|||+|.|+
T Consensus 1 L~I~V~~~RdvdH~~~~~-----------------------~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~ 54 (109)
T cd08689 1 LTITITSARDVDHIASPR-----------------------FSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIP 54 (109)
T ss_pred CEEEEEEEecCccccchh-----------------------hccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEE
Confidence 689999999998776311 14558999999999987779988 5899999999999
Q ss_pred cCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecC
Q 007000 123 VAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCS 157 (622)
Q Consensus 123 v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~ 157 (622)
+. ...+++|+|||......--||..-+.|++|..
T Consensus 55 Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 55 VE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred ec-CCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 95 46799999999754334578998888888764
No 134
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.83 E-value=1.1e-08 Score=113.78 Aligned_cols=120 Identities=27% Similarity=0.424 Sum_probs=89.4
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPVW 115 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~-----~~~~kT~vi~~t~nPvW 115 (622)
-.|.|+|+.|++|+... .+...|||.|.+.+ .++.+|.|+.|++||+|
T Consensus 1065 ~~lsv~vigaRHL~k~g---------------------------r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiW 1117 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG---------------------------RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIW 1117 (1267)
T ss_pred eEEEEEEeeccccccCC---------------------------CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCC
Confidence 47899999999999532 34467999999943 34446667889999999
Q ss_pred e-eEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeeccc
Q 007000 116 M-QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVE 191 (622)
Q Consensus 116 N-E~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~~ 191 (622)
| |+|+|.+.++. ..|+|.|+|.|.++ ..|||++++|+..|+.|- .-.+|.+.-.+.. .-.++.+.++..|..
T Consensus 1118 n~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1118 NPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLVFIEMRPVL 1192 (1267)
T ss_pred CCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhheeeeEecccc
Confidence 9 99999998776 88999999999999 469999999999999874 3357754332211 123455555555533
No 135
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.78 E-value=1.3e-08 Score=109.71 Aligned_cols=128 Identities=23% Similarity=0.467 Sum_probs=102.5
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE-E
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH-F 119 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~-f 119 (622)
|.|-|+|..|++||-||.. +...|.||.|++++..+ ||.|..+++||.||-. |
T Consensus 3 gkl~vki~a~r~lpvmdka-------------------------sd~tdafveik~~n~t~-ktdvf~kslnp~wnsdwf 56 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA-------------------------SDLTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWF 56 (1169)
T ss_pred CcceeEEEeccCCcccccc-------------------------cccchheeEEEecccce-ehhhhhhhcCCcccccce
Confidence 7789999999999999852 45689999999999988 9999999999999984 7
Q ss_pred EEecCCCC---cEEEEEEEecCCcC-CeeeEeEEEeceeecC----------CCeeeecccccCC-CCCccccCceEEEE
Q 007000 120 NVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS----------GDKIEGAFPILNS-SRKPCKAGAVLSLS 184 (622)
Q Consensus 120 ~~~v~~~~---~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~----------g~~~~~W~~L~~~-~g~~~k~~G~I~L~ 184 (622)
.|.+.+.. +.|.++++|+|..+ +|.||++.|++..|+- |.....|+|+++. +| -.|+|.+-
T Consensus 57 kfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg----irgeinvi 132 (1169)
T KOG1031|consen 57 KFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG----IRGEINVI 132 (1169)
T ss_pred EEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc----ccceeEEE
Confidence 78886543 68999999999887 9999999999887762 3457899999875 34 24677777
Q ss_pred EEeecccccccccc
Q 007000 185 IQYTPVENMSLYYR 198 (622)
Q Consensus 185 l~f~p~~~l~~~~~ 198 (622)
++.--...+..|.+
T Consensus 133 vkvdlfndlnkf~q 146 (1169)
T KOG1031|consen 133 VKVDLFNDLNKFPQ 146 (1169)
T ss_pred EEEeehhhhhhccc
Confidence 76544444454543
No 136
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.76 E-value=3.9e-08 Score=108.47 Aligned_cols=135 Identities=23% Similarity=0.285 Sum_probs=99.0
Q ss_pred HHHHHHHHhcccEEEEEE-EeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChHH
Q 007000 253 QDVYDAINQARRLIYITG-WSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEE 331 (622)
Q Consensus 253 ~~l~~aI~~Ar~~I~I~~-y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~ 331 (622)
..++++|.+|+++|+|++ | ++.+ ..+.++|+.++++||+|+||+ +..+..... ........
T Consensus 273 ~~~~~~i~~A~~~i~i~~pY-------f~~~----~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~------~~~~~~~~ 334 (438)
T COG1502 273 RLLLKAINSARESILIATPY-------FVPD----RELLAALKAAARRGVDVRIII-PSLGANDSA------IVHAAYRA 334 (438)
T ss_pred HHHHHHHHhhceEEEEEcCC-------cCCC----HHHHHHHHHHHhcCCEEEEEe-CCCCCCChH------HHHHHHHH
Confidence 679999999999999999 6 5555 788999999999999999997 743221110 01011123
Q ss_pred HHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCcccc
Q 007000 332 TRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTL 411 (622)
Q Consensus 332 ~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~ 411 (622)
....+.+.|+++..++.. ...|.|.+|||+ +++++|+.|++..-+...
T Consensus 335 ~~~~l~~~gv~i~~~~~g----------------~~lH~K~~iiD~--------~~~~vGS~N~~~rS~~lN-------- 382 (438)
T COG1502 335 YLKELLEAGVKVYEYPGG----------------AFLHSKVMIIDD--------RTVLVGSANLDPRSLRLN-------- 382 (438)
T ss_pred HHHHHHHhCCEEEEecCC----------------CcceeeEEEEcC--------CEEEEeCCcCCHhHHHHh--------
Confidence 455567889888765431 238999999999 899999999987544210
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeCh-HHHHHHHHHHHHHhhc
Q 007000 412 ETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEERWLKA 462 (622)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gp-av~dl~~~F~~~W~~~ 462 (622)
....+.|+.+ .+.++...|...|...
T Consensus 383 -------------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 383 -------------------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -------------------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 2567788887 6889999999777654
No 137
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.63 E-value=3.3e-06 Score=89.69 Aligned_cols=189 Identities=18% Similarity=0.154 Sum_probs=114.8
Q ss_pred CCCCccCCCCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecce-eeEE
Q 007000 202 SGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHT-VRLV 280 (622)
Q Consensus 202 ~~~~~~~~~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~-~~i~ 280 (622)
+++.+.+.+...+-....|++.++.+=+. -+...++.+. -.++++-++.|+.|+++++|..|--+=. .++.
T Consensus 32 ~s~~~~p~~~~~~~c~~~C~~~vvESIP~------gl~f~~~t~~--~sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~~ 103 (456)
T KOG3603|consen 32 SSPDFSPLPREARECGDTCKLVLVESIPA------GLTFPDASPF--LSTKEAWLELLSTAQEELDIASFYWSLTGKDTG 103 (456)
T ss_pred CchhcCcchhhhhhhcCceeEEEEecccc------cCcCcccCCC--ccHHHHHHHHhhccceEEEEEEEeeccccceec
Confidence 34555555433222344567777765332 1111222222 1257889999999999999987732100 0111
Q ss_pred eCCC---CchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcCCC-eEEEecCCCCCCCccc
Q 007000 281 RDGS---NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSS-VQVLLCPRSAGKGHSF 356 (622)
Q Consensus 281 ~~~~---~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~~g-v~v~~~~~~~~~~~~~ 356 (622)
-++. .|..+...|..++.+||.|||.. ....... +. .-...|+..| ++++-.+-. .|
T Consensus 104 ~~dsSt~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~~------------~d~~~Le~~Gaa~vr~id~~-----~l 164 (456)
T KOG3603|consen 104 VVDSSTQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-PN------------ADLQVLESLGLAQVRSIDMN-----RL 164 (456)
T ss_pred cCCCcchHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-Cc------------ccHHHHHhCCCceEEeeccc-----cc
Confidence 1111 37899999999999999999986 4332211 21 1234466677 666643211 11
Q ss_pred ccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCc
Q 007000 357 VKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPW 436 (622)
Q Consensus 357 ~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 436 (622)
.+ -.-.|-|++|||+ +--|+||.|+.+.-.. .-
T Consensus 165 -----~g-~GvlHtKf~vvD~--------khfylGSaNfDWrSlT---------------------------------qv 197 (456)
T KOG3603|consen 165 -----TG-GGVLHTKFWVVDI--------KHFYLGSANFDWRSLT---------------------------------QV 197 (456)
T ss_pred -----cc-CceEEEEEEEEec--------ceEEEeccccchhhcc---------------------------------ce
Confidence 11 3568999999999 7889999999874331 12
Q ss_pred eeeeeEEeC--hHHHHHHHHHHHHHhhccC
Q 007000 437 HDLHCRIDG--PAAYDILTNFEERWLKASK 464 (622)
Q Consensus 437 ~D~~~ri~G--pav~dl~~~F~~~W~~~~~ 464 (622)
..+++.++. -++.||...|.+.|..-..
T Consensus 198 kElGv~v~NCpclakDL~kiFe~yW~lg~~ 227 (456)
T KOG3603|consen 198 KELGVVVRNCPCLAKDLKKIFERYWYLGNA 227 (456)
T ss_pred eEeeeEEecChhHHHHHHHHHHHHhcCCCC
Confidence 345555554 4699999999999996543
No 138
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.63 E-value=9e-09 Score=68.34 Aligned_cols=27 Identities=63% Similarity=0.966 Sum_probs=18.1
Q ss_pred ccccccceEEEccCCccCcceeEEEEcccccCCcc
Q 007000 365 IYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGR 399 (622)
Q Consensus 365 ~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~ 399 (622)
.++||||++|||+ ++||+||+|++++|
T Consensus 2 ~~~~H~K~~vvD~--------~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDD--------RVAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETT--------TEEEEE---SSHHH
T ss_pred CcceeeEEEEEcC--------CEEEECceecCCCC
Confidence 3689999999999 89999999998753
No 139
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.60 E-value=1.2e-08 Score=112.45 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=90.7
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C----------------------
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G---------------------- 98 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~--~---------------------- 98 (622)
|.|.+.+|++|-++|. +|.+||||+..+- .
T Consensus 116 l~is~~~ak~l~akd~--------------------------ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~ 169 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDV--------------------------NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQD 169 (1103)
T ss_pred HHHHHHHhcCccccCC--------------------------CCCCChhhhhccccccccccChhhhhhhhhhhhhcccc
Confidence 5677778888877664 7889999998772 0
Q ss_pred ------EEEeeeeeecCCCCCeeeeEEEEecCCCC-cEEEEEEEecCC--------------------------------
Q 007000 99 ------AVIGRTFVISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDF-------------------------------- 139 (622)
Q Consensus 99 ------~~~~kT~vi~~t~nPvWNE~f~~~v~~~~-~~L~l~V~D~d~-------------------------------- 139 (622)
+...-|+|+++|+||+|||.|.|.+.+.. ..+.|.+||+|.
T Consensus 170 ~GpiPAKlIkatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSAR 249 (1103)
T KOG1328|consen 170 TGPIPAKLIKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSAR 249 (1103)
T ss_pred CCCCcHHHhhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHh
Confidence 01124788889999999999999998776 688999999761
Q ss_pred --c---CCeeeEeEEEeceeecCCCeeeecccccCCCCCccccCceEEEEEEeec
Q 007000 140 --V---GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 140 --~---~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
. .|||+|.+.|||++|.. ...+.||.|..+..+. +-.|.++|.+...-
T Consensus 250 ans~d~tDDFLGciNipl~EiP~-~Gld~WFkLepRS~~S-~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 250 ANSDDCTDDFLGCINIPLAEIPP-DGLDQWFKLEPRSDKS-KVQGQVKLKLWLST 302 (1103)
T ss_pred cCCCccccccccccccchhcCCc-chHHHHhccCcccccc-cccceEEEEEEEee
Confidence 0 26899999999999973 4478999997654433 35678888888654
No 140
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.58 E-value=1.5e-08 Score=111.74 Aligned_cols=99 Identities=24% Similarity=0.368 Sum_probs=82.2
Q ss_pred CcceeEee--ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE------EEee
Q 007000 32 GSLKVLLL--HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA------VIGR 103 (622)
Q Consensus 32 ~~~~~~~~--~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~------~~~k 103 (622)
.|+|.-+. +.+|.|.|+-|+++.+.|. +|.+||||+|.+... ...|
T Consensus 936 lsvr~~y~~n~q~L~veVlhA~diipLD~--------------------------NGlSDPFVviEl~P~~~fp~v~~q~ 989 (1103)
T KOG1328|consen 936 LSVRAYYNGNAQTLVVEVLHAKDIIPLDS--------------------------NGLSDPFVVIELIPKFRFPAVPVQK 989 (1103)
T ss_pred eEEEEEeeccccchhhhhhccccccccCC--------------------------CCCCCCeEEEEeccccccccchhhh
Confidence 45554433 3479999999999998775 889999999999753 3359
Q ss_pred eeeecCCCCCeeeeEEEEecCCCC-----cEEEEEEEecCCcC-CeeeEeEEEeceeec
Q 007000 104 TFVISNSESPVWMQHFNVPVAHSA-----AEVHFVVKDNDFVG-SQIMGAVGIPVEKLC 156 (622)
Q Consensus 104 T~vi~~t~nPvWNE~f~~~v~~~~-----~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~ 156 (622)
|+|+++|+||+|+|+|+|.++... ..+.|+|+|+|.+. |||-|++.+.|.++.
T Consensus 990 T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 990 TKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred hhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 999999999999999999886532 46889999999998 999999999998875
No 141
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.46 E-value=1.9e-06 Score=95.22 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCCh-
Q 007000 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND- 329 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~- 329 (622)
....+.++|.+|+++|+|++--| ..+ ..+.++|+.|+++||+|+||+ -+..+..+....+..+.....
T Consensus 252 l~~~~~~li~~A~~~i~I~TPYF------~p~----~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy~~~d~~~~~~~~~ 320 (451)
T PRK09428 252 LNKTIFHLMASAEQKLTICTPYF------NLP----AILVRNIIRLLRRGKKVEIIV-GDKTANDFYIPPDEPFKIIGAL 320 (451)
T ss_pred HHHHHHHHHhccCcEEEEEeCCc------CCC----HHHHHHHHHHHhcCCcEEEEc-CCcccccCcCCCccHHHHhhhh
Confidence 67788899999999999998843 333 789999999999999999997 433221111001111111000
Q ss_pred HHHHh-----------hhcCCC---eEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEccccc
Q 007000 330 EETRR-----------FFKHSS---VQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDL 395 (622)
Q Consensus 330 ~~~~~-----------~l~~~g---v~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni 395 (622)
+.... .+.++| |++..++ .+..|.|.++||+ +++++||.|+
T Consensus 321 py~ye~~lr~f~~~~~~li~~G~l~v~i~~~~-----------------~~~~HaK~i~vD~--------~~~~iGS~Nl 375 (451)
T PRK09428 321 PYLYEINLRRFAKRLQYYIDNGQLNVRLWKDG-----------------DNSYHLKGIWVDD--------RWMLLTGNNL 375 (451)
T ss_pred HHHHHHhhhhhHHHhhhhhhcCcceEEEEecC-----------------CCcceEEEEEEeC--------CEEEEcCCCC
Confidence 11111 123344 5444432 2458999999999 8999999999
Q ss_pred CCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHHHHHHHHHHHHHhh
Q 007000 396 CKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLK 461 (622)
Q Consensus 396 ~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav~dl~~~F~~~W~~ 461 (622)
...-|.-+ ...++.|..|. ..|...|.+....
T Consensus 376 d~RS~~ln---------------------------------~E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 376 NPRAWRLD---------------------------------LENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred ChhHhhhc---------------------------------ccceEEEECCh-HHHHHHHHHHHHH
Confidence 87555321 24577788877 8888888888764
No 142
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.96 E-value=7.2e-06 Score=95.28 Aligned_cols=109 Identities=24% Similarity=0.322 Sum_probs=85.7
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeec
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVIS 108 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~----~~~~~kT~vi~ 108 (622)
.|.--+.+|+|.|-|.-|++|+-.. .+..+||||+.++- ++...||+|+.
T Consensus 1516 ~LsIsY~~~~LtImV~H~K~L~~Lq--------------------------dg~~P~pyVK~YLlPdp~k~sKRKTKvvr 1569 (1639)
T KOG0905|consen 1516 KLSISYNNGTLTIMVMHAKGLALLQ--------------------------DGQDPDPYVKTYLLPDPRKTSKRKTKVVR 1569 (1639)
T ss_pred EEEEEEcCceEEEEhhhhccccccc--------------------------CCCCCCcceeEEecCCchHhhhhhhcccc
Confidence 3666778899999999999995221 14458999999994 23334999999
Q ss_pred CCCCCeeeeEEE---EecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccc
Q 007000 109 NSESPVWMQHFN---VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 109 ~t~nPvWNE~f~---~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
+|.||.|||... +|..... ..|.++|+..+.+. +.++|.+.++|.++.-.++...||+|
T Consensus 1570 kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1570 KTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred ccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 999999999765 4444343 68999999988766 88999999999988766666689999
No 143
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.92 E-value=1.3e-05 Score=89.35 Aligned_cols=105 Identities=20% Similarity=0.332 Sum_probs=77.2
Q ss_pred CCCCCcEEEEEECCE---EEeeeeeecCCCCCeeeeEEEEecCCC----------------CcEEEEEEEec-CCcC-Ce
Q 007000 85 KITSDPYVTVSICGA---VIGRTFVISNSESPVWMQHFNVPVAHS----------------AAEVHFVVKDN-DFVG-SQ 143 (622)
Q Consensus 85 ~g~~DPYv~V~l~~~---~~~kT~vi~~t~nPvWNE~f~~~v~~~----------------~~~L~l~V~D~-d~~~-dd 143 (622)
++.+||||+|...+. +..+|+++++|.+|.|||.|.|.+... ...|++++|++ +... ++
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 456899999998642 124899999999999999999877543 24577888884 4444 78
Q ss_pred eeEeEEEeceeecCCCeeeecccccCC-CCC---ccccCceEEEEEEeec
Q 007000 144 IMGAVGIPVEKLCSGDKIEGAFPILNS-SRK---PCKAGAVLSLSIQYTP 189 (622)
Q Consensus 144 ~IG~~~i~L~~l~~g~~~~~W~~L~~~-~g~---~~k~~G~I~L~l~f~p 189 (622)
|+|++.+++..+........||-|... +|+ ....-|.+++.+.|..
T Consensus 228 FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999999999888755566889999743 232 1123467788888764
No 144
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.91 E-value=0.0002 Score=73.56 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=99.3
Q ss_pred cCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhh
Q 007000 217 RRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIK 296 (622)
Q Consensus 217 ~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~a 296 (622)
..-.++++|...+. ++.++ +=+.+-+.|.+|++.|-|.+- ++.| ..-|.|+|.++
T Consensus 116 ~g~Tr~~vy~qPp~----------~~~p~-----IKE~vR~~I~~A~kVIAIVMD-------~FTD---~dIf~DLleAa 170 (284)
T PF07894_consen 116 KGVTRATVYFQPPK----------DGQPH-----IKEVVRRMIQQAQKVIAIVMD-------VFTD---VDIFCDLLEAA 170 (284)
T ss_pred cCCceEEEEeCCCC----------CCCCC-----HHHHHHHHHHHhcceeEEEee-------cccc---HHHHHHHHHHH
Confidence 34468999986542 11222 357777889999999999987 5555 24556655555
Q ss_pred hcCCCeEEEEEeCCCcccccccccccCccCCChHHHHhhhcC--------CCeEEEecCCCCCCCccccccccccccccc
Q 007000 297 SQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKH--------SSVQVLLCPRSAGKGHSFVKKQEVGTIYTH 368 (622)
Q Consensus 297 a~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~~~~~~~~l~~--------~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (622)
.+|||-|+||+ |..+... +..+..+ .+++|+--. |. -|..+...++....
T Consensus 171 ~kR~VpVYiLL-D~~~~~~----------------Fl~Mc~~~~v~~~~~~nmrVRsv~---G~--~y~~rsg~k~~G~~ 228 (284)
T PF07894_consen 171 NKRGVPVYILL-DEQNLPH----------------FLEMCEKLGVNLQHLKNMRVRSVT---GC--TYYSRSGKKFKGQL 228 (284)
T ss_pred HhcCCcEEEEe-chhcChH----------------HHHHHHHCCCChhhcCCeEEEEec---CC--eeecCCCCeeeCcc
Confidence 69999999997 9876432 2222221 233444311 11 01111112345789
Q ss_pred ccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHH
Q 007000 369 HQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAA 448 (622)
Q Consensus 369 HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav 448 (622)
|+|+++||+ ..+..|+--++|..... =+-+-..+.|.+|
T Consensus 229 ~eKF~lvD~--------~~V~~GSYSFtWs~~~~---------------------------------~r~~~~~~tGq~V 267 (284)
T PF07894_consen 229 KEKFMLVDG--------DKVISGSYSFTWSSSRV---------------------------------HRNLVTVLTGQIV 267 (284)
T ss_pred cceeEEEec--------ccccccccceeeccccc---------------------------------ccceeEEEecccc
Confidence 999999999 78899987665432110 0346788999999
Q ss_pred HHHHHHHHHHHh
Q 007000 449 YDILTNFEERWL 460 (622)
Q Consensus 449 ~dl~~~F~~~W~ 460 (622)
....+.|..-..
T Consensus 268 e~FD~EFR~LyA 279 (284)
T PF07894_consen 268 ESFDEEFRELYA 279 (284)
T ss_pred chHhHHHHHHHH
Confidence 999999987643
No 145
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=5.5e-06 Score=85.21 Aligned_cols=124 Identities=22% Similarity=0.261 Sum_probs=88.2
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPVW 115 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~-----~~~~kT~vi~~t~nPvW 115 (622)
..+..+|..|++|+.|++ ++.-|||++..+.. .++ +|++..+++||+|
T Consensus 93 ~~~~~tl~~a~~lk~~~~--------------------------~~~~d~~~~~~llpga~kl~sl-r~~t~~n~lN~~w 145 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPMDI--------------------------NGLADPYVKLHLLPGAGKLNSL-RTKTTRNTLNPEW 145 (362)
T ss_pred hhcceeechhcccchhhh--------------------------hhhcchHHhhhcccchhhhhhh-hHHhhccCcCcce
Confidence 368999999999999986 66789999999952 234 8899999999999
Q ss_pred eeEEEE--ecCCCC--cEEEEEEEecCCcC-CeeeEeEEEeceeecCCC--eeeecccccCCCCC----ccccCceEEEE
Q 007000 116 MQHFNV--PVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD--KIEGAFPILNSSRK----PCKAGAVLSLS 184 (622)
Q Consensus 116 NE~f~~--~v~~~~--~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~--~~~~W~~L~~~~g~----~~k~~G~I~L~ 184 (622)
||+-.. ...+.. ..+++.|.|.+.+. ++++|+..+++..|.+.+ ....||.-..+.++ .....|.+.++
T Consensus 146 ~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~is 225 (362)
T KOG1013|consen 146 NETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILIS 225 (362)
T ss_pred eccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeee
Confidence 996543 333322 45678888988877 899999999999888543 23445433222111 11345788888
Q ss_pred EEeeccc
Q 007000 185 IQYTPVE 191 (622)
Q Consensus 185 l~f~p~~ 191 (622)
+.|-...
T Consensus 226 l~~~s~~ 232 (362)
T KOG1013|consen 226 LAYSSTT 232 (362)
T ss_pred eccCcCC
Confidence 8876544
No 146
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.88 E-value=7.6e-06 Score=94.09 Aligned_cols=88 Identities=24% Similarity=0.312 Sum_probs=76.0
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEe-eeeeecCCCCCeeeeE
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIG-RTFVISNSESPVWMQH 118 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~-kT~vi~~t~nPvWNE~ 118 (622)
...++|.|++|.+|.+.|. +|..|||+++.++++... ++..+.+++||++++.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~--------------------------ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkm 665 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDG--------------------------NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKM 665 (1105)
T ss_pred eeeEEEEEEEeeeccccCC--------------------------CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHH
Confidence 3568999999999998885 788999999999987642 7778999999999999
Q ss_pred EEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEece
Q 007000 119 FNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVE 153 (622)
Q Consensus 119 f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~ 153 (622)
|.+....+. ..+++.|||+|..+ |+.||+..++|+
T Consensus 666 fel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 666 FELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred HHhhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 988765554 67899999999988 899999999986
No 147
>PLN02964 phosphatidylserine decarboxylase
Probab=97.81 E-value=1.9e-05 Score=90.11 Aligned_cols=101 Identities=16% Similarity=0.278 Sum_probs=77.7
Q ss_pred eeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEE-EEECCEEEeeeeeecCCCCCeee
Q 007000 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVT-VSICGAVIGRTFVISNSESPVWM 116 (622)
Q Consensus 38 ~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~-V~l~~~~~~kT~vi~~t~nPvWN 116 (622)
-+.|...|+|++|+ |+. .|||.. +.+|.+.+ ||.+.++|+||+||
T Consensus 51 ~~~~~~~~~~~~~~----~~~-----------------------------~~~~~~~~~~g~~~f-~t~~~~~~~~p~~~ 96 (644)
T PLN02964 51 DFSGIALLTLVGAE----MKF-----------------------------KDKWLACVSFGEQTF-RTETSDSTDKPVWN 96 (644)
T ss_pred cccCeEEEEeehhh----hcc-----------------------------CCcEEEEEEecceee-eeccccccCCcccc
Confidence 45578888888887 443 589765 56676766 99999999999999
Q ss_pred eEEEEecCCCC-cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeec--ccccCCCC
Q 007000 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGA--FPILNSSR 172 (622)
Q Consensus 117 E~f~~~v~~~~-~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W--~~L~~~~g 172 (622)
|...|.+.... ....|.|+|++.++ ++++|.++++|.++...+..+.| |.++++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg 156 (644)
T PLN02964 97 SEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS 156 (644)
T ss_pred hhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence 98887775443 55699999999988 89999999999888765443333 67777665
No 148
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.80 E-value=1.5e-05 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.8
Q ss_pred cccccceEEEccCCccCcceeEEEEcccccCCc
Q 007000 366 YTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKG 398 (622)
Q Consensus 366 ~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~ 398 (622)
.++|+|++|||+ +.+++||.|++..
T Consensus 3 ~~~H~K~~v~D~--------~~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDD--------EIAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcC--------CEEEEeCccCCCC
Confidence 569999999999 8999999999874
No 149
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.77 E-value=2.9e-05 Score=70.17 Aligned_cols=112 Identities=22% Similarity=0.369 Sum_probs=76.3
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC---CEEEeeeeeecCCCCCeeeeEE
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC---GAVIGRTFVISNSESPVWMQHF 119 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~---~~~~~kT~vi~~t~nPvWNE~f 119 (622)
|.|.|.+|.+|+........ + ...+ +-.+++| .++||++.+. +.+.-+|+++.++..|+||-.+
T Consensus 1 lsv~I~RA~GLqaAA~~la~--~--~~~l-~y~a~VG--------VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~ 67 (143)
T cd08683 1 LSVQIHRASGLQAAARALAE--Q--DPSL-QYSATVG--------VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHV 67 (143)
T ss_pred CeEEeehhhhHHHHHHHHhh--h--Cccc-ccceecc--------cceEEEEEeccCCCCceeeccchhhhcCCCccceE
Confidence 46888999998754321000 0 0000 1111332 7999999973 3444499999999999999999
Q ss_pred EEecCC----------------CCcEEEEEEEecCCc-----------CCeeeEeEEEeceeecC-CCeeeecccc
Q 007000 120 NVPVAH----------------SAAEVHFVVKDNDFV-----------GSQIMGAVGIPVEKLCS-GDKIEGAFPI 167 (622)
Q Consensus 120 ~~~v~~----------------~~~~L~l~V~D~d~~-----------~dd~IG~~~i~L~~l~~-g~~~~~W~~L 167 (622)
+|+++- ...++.|+||+.... +|-+||.+.||+.+|.. .....+||++
T Consensus 68 Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 68 EFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred EEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 998761 125788999985521 24489999999999884 4568899985
No 150
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=3.3e-05 Score=79.57 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=81.3
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeec
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVIS 108 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~----~~~~kT~vi~ 108 (622)
|+.+.-...-|.|++++|.+|..+|. +|-+||||.+++.. ....||.+.+
T Consensus 225 sl~~~s~~~~l~vt~iRc~~l~ssDs--------------------------ng~sDpyvS~~l~pdv~~~fkkKt~~~K 278 (362)
T KOG1013|consen 225 SLAYSSTTPGLIVTIIRCSHLASSDS--------------------------NGYSDPYVSQRLSPDVGKKFKKKTQQKK 278 (362)
T ss_pred eeccCcCCCceEEEEEEeeeeecccc--------------------------CCCCCccceeecCCCcchhhcccCcchh
Confidence 45555555678999999999987764 77799999999842 2335899999
Q ss_pred CCCCCeeeeEEEEecCCCC---cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccc
Q 007000 109 NSESPVWMQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (622)
Q Consensus 109 ~t~nPvWNE~f~~~v~~~~---~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L 167 (622)
++.||++|+.|.+.+.+.. ..+.|+|+|.+..+ ++++|-....+ ...+....+|+.-
T Consensus 279 ~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 279 KTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRC 339 (362)
T ss_pred ccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCcccc
Confidence 9999999999988875532 68899999999875 88998765543 3456666677543
No 151
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.00027 Score=77.91 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=80.6
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC------CEEEeeeeeecCCCCCee
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC------GAVIGRTFVISNSESPVW 115 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~------~~~~~kT~vi~~t~nPvW 115 (622)
-++|+|..|.+|+=.- +|..-|||.|.+- +++...|++..|+..|.+
T Consensus 1126 kvtvkvvaandlkwqt---------------------------sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKy 1178 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT---------------------------SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKY 1178 (1283)
T ss_pred eEEEEEEecccccchh---------------------------ccccccceEEEEecCcccchhhhccccccCCCcCccc
Confidence 4889999999997211 4557899999983 234447888889999999
Q ss_pred eeEEEEecCCCC----cEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeeccccc
Q 007000 116 MQHFNVPVAHSA----AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (622)
Q Consensus 116 NE~f~~~v~~~~----~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~ 168 (622)
||+|.|.+.... -+|.|.|.|+..-. |..+|.+.+.|+++.....-.-|++|-
T Consensus 1179 NEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1179 NETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 999999875432 57899999988777 779999999999999766677899994
No 152
>PF13918 PLDc_3: PLD-like domain
Probab=97.46 E-value=0.00038 Score=66.95 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhh-cCCCeEEEEE
Q 007000 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS-QEGVRVLILA 307 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa-~rGV~VriLv 307 (622)
-.++++..|+.|+++|+|+...+-|.+..-.+-.-.-.|.++|++|| .|||+||+|+
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 37999999999999999999999887644333334688999999887 8999999998
No 153
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.38 E-value=0.001 Score=76.74 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=93.2
Q ss_pred ecCCccccchhHHHHHHHHHHhccc----EEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccc
Q 007000 240 LDGGVQFNHESCWQDVYDAINQARR----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRS 315 (622)
Q Consensus 240 ~~~~~~~~~~~~f~~l~~aI~~Ar~----~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~ 315 (622)
+-.++..+.+.+.+.+.++|..||+ +|+|.+.. +.+ ..+.++|..|+++||+|++|+ .+.-+.
T Consensus 494 l~~~P~~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~-------l~D----~~ii~aL~~As~aGV~V~Liv-RGiCcL- 560 (672)
T TIGR03705 494 LLVSPFTLRKRLLELIDREIENARAGKPARIIAKMNS-------LVD----PDLIDALYEASQAGVKIDLIV-RGICCL- 560 (672)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC-------CCC----HHHHHHHHHHHHCCCeEEEEE-eccccc-
Confidence 3334445555567777778999998 99999883 234 889999999999999999998 655332
Q ss_pred cccccccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEccccc
Q 007000 316 ILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDL 395 (622)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni 395 (622)
.||.. + ...++.|.-+ .+.... |-|+...... ....+|+|+.||
T Consensus 561 ~pgip--g-------------~sd~i~v~si---------------v~r~Le-h~rIy~f~~~-----~d~~~~igSAn~ 604 (672)
T TIGR03705 561 RPGVP--G-------------LSENIRVRSI---------------VGRFLE-HSRIYYFGNG-----GEEKVYISSADW 604 (672)
T ss_pred CCCCC--C-------------CCCCEEEEEE---------------hhHhhC-cCEEEEEeCC-----CCcEEEEECCCC
Confidence 11100 0 1122333211 011223 7888777531 126999999999
Q ss_pred CCcccCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHH-HHHHHHhhccCC
Q 007000 396 CKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILT-NFEERWLKASKP 465 (622)
Q Consensus 396 ~~~~~d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpa-v~dl~~-~F~~~W~~~~~~ 465 (622)
...-++ .-..+.+.|..|. ...+.. .+.-.|++..+.
T Consensus 605 m~Rnl~---------------------------------~r~E~~~~i~d~~~~~~l~~~il~~~l~Dn~ka 643 (672)
T TIGR03705 605 MTRNLD---------------------------------RRVEVLFPIEDPTLKQRVLDEILEAYLADNVKA 643 (672)
T ss_pred CCCccc---------------------------------ceEEEEEEEcCHHHHHHHHHHHHHHhCccccce
Confidence 874443 1258899898877 555656 788888876543
No 154
>PRK05443 polyphosphate kinase; Provisional
Probab=97.37 E-value=0.0011 Score=76.86 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=88.5
Q ss_pred cchhHHHHHHHHHHhccc----EEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCccc--cccccc
Q 007000 247 NHESCWQDVYDAINQARR----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSR--SILGYK 320 (622)
Q Consensus 247 ~~~~~f~~l~~aI~~Ar~----~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~--~~~~~~ 320 (622)
+.+.+.+.+.++|++||+ +|+|.+.. +.+ ..+.++|..|+++||+|+||+ .+.-+. ++++.+
T Consensus 510 ~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~-------l~d----~~ii~aL~~As~~GV~V~liV-RGiC~l~pgipg~s 577 (691)
T PRK05443 510 LRERLLELIDREIANARAGKPARIIAKMNS-------LVD----PQIIDALYEASQAGVKIDLIV-RGICCLRPGVPGLS 577 (691)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-------CCC----HHHHHHHHHHHHCCCeEEEEE-ecccccCCCCCCCC
Confidence 344467777778999998 99999883 234 889999999999999999998 655332 112211
Q ss_pred ccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCccc
Q 007000 321 TDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRY 400 (622)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~ 400 (622)
.++.|.- ++ +-.. .|-|+...+.. ....+|+|+.|+...-+
T Consensus 578 ------------------d~i~v~s----------~v-----~r~L-eh~rIy~f~~g-----d~~~~~iGSAn~d~Rsl 618 (691)
T PRK05443 578 ------------------ENIRVRS----------IV-----GRFL-EHSRIYYFGNG-----GDEEVYISSADWMPRNL 618 (691)
T ss_pred ------------------CCEEEHH----------HH-----HHHH-hcCEEEEEeCC-----CCcEEEEECCCCCcccc
Confidence 1111110 00 0011 24566666421 01799999999987544
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHHHhhccCC
Q 007000 401 DTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLKASKP 465 (622)
Q Consensus 401 d~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpa-v~dl~~~F~~~W~~~~~~ 465 (622)
+ .-.++.+-|..|. +..+...|..+|....+.
T Consensus 619 ~---------------------------------~r~Ev~~~i~d~~~~~~l~~~~~~~l~dn~ka 651 (691)
T PRK05443 619 D---------------------------------RRVEVLFPILDPRLKQRLLEILEIQLADNVKA 651 (691)
T ss_pred c---------------------------------ceEEEeEEEeCHHHHHHHHHHHHHHHhhhhhe
Confidence 3 1258888888876 777888999999876553
No 155
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.26 E-value=0.00024 Score=60.00 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=54.8
Q ss_pred EEE--EEECCEEEeeeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecc
Q 007000 91 YVT--VSICGAVIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAF 165 (622)
Q Consensus 91 Yv~--V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~ 165 (622)
|++ +.+.+....||++.+...||+++|+|.|.+... ...|.|+|+. ...+...||.+.+.|+++. .++.++|.
T Consensus 24 ~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW~ 101 (103)
T cd08684 24 YIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHWL 101 (103)
T ss_pred EEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhhh
Confidence 554 444554445999999999999999999887543 2567788887 3334789999999998774 34466786
Q ss_pred cc
Q 007000 166 PI 167 (622)
Q Consensus 166 ~L 167 (622)
.+
T Consensus 102 e~ 103 (103)
T cd08684 102 EI 103 (103)
T ss_pred cC
Confidence 53
No 156
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.016 Score=55.93 Aligned_cols=141 Identities=18% Similarity=0.286 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCccCCC
Q 007000 249 ESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTN 328 (622)
Q Consensus 249 ~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~~~~ 328 (622)
+...+++...|+.|.+-..+.+| |-.++- .-+.+.|..+..+||++|||- +..-++.-|
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaF-------it~sG~--sll~~~L~d~~~Kgvkgkilt-s~YlnfTdP----------- 96 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAF-------ITESGL--SLLFDLLLDLVNKGVKGKILT-SDYLNFTDP----------- 96 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEE-------eeCccH--HHHHHHHHHHhcCCceEEEec-ccccCccCH-----------
Confidence 34899999999999987777777 544421 668899999999999999996 655443221
Q ss_pred hHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCCCCc
Q 007000 329 DEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (622)
Q Consensus 329 ~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H~~~ 408 (622)
...++.+.-.+|+++.+... ....|.|=.+.-... .-.|++|+.|+++.-+-. .|
T Consensus 97 -~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~-----~~taiiGSsNlt~sALt~-n~--- 151 (198)
T COG3886 97 -VALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNT-----GITAIIGSSNLTDSALTV-NE--- 151 (198)
T ss_pred -HHHHHHHhhhccceEEEecC---------------ccccccceeEEEecc-----eEEEEEccchhhhhhccc-CH---
Confidence 12344444455777775321 234788877764321 157999999999976532 11
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCce-eeeeEEeChHHHHHHHHHHHHHhh
Q 007000 409 KTLETVHKDDYYNPSLLEPIAGGPREPWH-DLHCRIDGPAAYDILTNFEERWLK 461 (622)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-D~~~ri~Gpav~dl~~~F~~~W~~ 461 (622)
.|- -+...-.|.+|..+...|.+.|..
T Consensus 152 --------------------------Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 152 --------------------------EWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred --------------------------HHHhhhccccccchHHHHHHHHHHHHHh
Confidence 121 123335688999999999999984
No 157
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.81 E-value=0.00033 Score=81.14 Aligned_cols=100 Identities=22% Similarity=0.252 Sum_probs=73.8
Q ss_pred EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 007000 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (622)
Q Consensus 42 ~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~ 121 (622)
.|+..|++|+.|..+|. .+.+|||..|.+.++.. .|.++.+|+||.||++..|
T Consensus 207 ~lR~yiyQar~L~a~dk--------------------------~~~sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f 259 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDK--------------------------DDESDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIF 259 (1105)
T ss_pred hhHHHHHHHHhhcCCCc--------------------------ccCCCchhhhhcccccc-eeEeecCcCCCCccceeec
Confidence 46666777777766553 67799999999999888 8999999999999998765
Q ss_pred e---cCCC-------CcEEEEEEEecCCcC-CeeeEeEEEeceeecCCCeeeecccccC
Q 007000 122 P---VAHS-------AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (622)
Q Consensus 122 ~---v~~~-------~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~ 169 (622)
. +... --.+.|+|||.+..+ ++++|.......-... ...-.|+++..
T Consensus 260 ~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 260 DEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred cceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 3 2111 135688999999888 8999988765443332 33456888853
No 158
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.75 E-value=0.0049 Score=70.79 Aligned_cols=99 Identities=23% Similarity=0.320 Sum_probs=73.7
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeec-CCC
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------AVIGRTFVIS-NSE 111 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~------~~~~kT~vi~-~t~ 111 (622)
..++|.|+|++++=|..++ ...||.|.+-+ .+..||+++. |+.
T Consensus 701 IA~t~sV~VISgqFLSdrk------------------------------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~ 750 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK------------------------------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSF 750 (1189)
T ss_pred EEeeEEEEEEeeeeccccc------------------------------cCceEEEEecCCCchhhhhhhhhccccCCCC
Confidence 4578999999999888654 35899999843 1334888865 599
Q ss_pred CCeeeeE-EEEe--cCCCCcEEEEEEEecCCcCCeeeEeEEEeceeecCCCeeeecccccCCCCC
Q 007000 112 SPVWMQH-FNVP--VAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK 173 (622)
Q Consensus 112 nPvWNE~-f~~~--v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g~ 173 (622)
||+|||. |.|. +-+....|+|.||+.. ..+||+-.+|+..|..|. +.+.|.+..++
T Consensus 751 npvy~eepfvF~KVvLpeLA~lRiavyeEg---gK~ig~RIlpvd~l~~GY---rhv~LRse~Nq 809 (1189)
T KOG1265|consen 751 NPVYEEEPFVFRKVVLPELASLRIAVYEEG---GKFIGQRILPVDGLNAGY---RHVCLRSESNQ 809 (1189)
T ss_pred CcccccCCcccceecccchhheeeeeeccC---CceeeeeccchhcccCcc---eeEEecCCCCC
Confidence 9999994 6664 3334478999999854 689999999999998875 34566444444
No 159
>PLN02352 phospholipase D epsilon
Probab=96.55 E-value=0.005 Score=71.31 Aligned_cols=59 Identities=24% Similarity=0.234 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCC-------CCchhHHHHHHhhhc--CCCeEEEEE
Q 007000 249 ESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDG-------SNTLMLGDLLKIKSQ--EGVRVLILA 307 (622)
Q Consensus 249 ~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~-------~~g~~l~~~L~~aa~--rGV~VriLv 307 (622)
.+...+.+++|++||+.||||.=-|....+.|..+ .++..|.++|.+|.+ ++-+|+|++
T Consensus 452 rSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 452 RSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred hHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 45899999999999999999865443333344332 134678888888765 457777776
No 160
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.94 E-value=0.04 Score=55.88 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeC
Q 007000 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWD 309 (622)
Q Consensus 250 ~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D 309 (622)
+....+.+.|++|+++|+|+.|. +.-..+.+.|.+|.+|||+|.++++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~-----------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP-----------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G-----------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH-----------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 37899999999999999999981 12377999999999999999999844
No 161
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.0055 Score=64.58 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=79.9
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCee
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPVW 115 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~--~--~~~kT~vi~~t~nPvW 115 (622)
.|.|+|.|++|++|..+... +..++|||+|++-. . ...+|+...++++|-+
T Consensus 268 ~g~l~vEii~ar~l~~k~~~-------------------------k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~ply 322 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGS-------------------------KSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLY 322 (405)
T ss_pred cCceeEEEEecccccccCCc-------------------------ccccCceeEEEEcCCCceecccccccccccCchhh
Confidence 36899999999999865431 22589999999932 1 2238999999988866
Q ss_pred eeEEEEecCCCCcEEEEEEEe-cCCcC-CeeeEeEEEeceeecCCC-eeeecccccCCC
Q 007000 116 MQHFNVPVAHSAAEVHFVVKD-NDFVG-SQIMGAVGIPVEKLCSGD-KIEGAFPILNSS 171 (622)
Q Consensus 116 NE~f~~~v~~~~~~L~l~V~D-~d~~~-dd~IG~~~i~L~~l~~g~-~~~~W~~L~~~~ 171 (622)
-+...|.-......|.++||. +.... +.|+|.+.+-+.+|--+. ....||+|+...
T Consensus 323 qq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 323 QQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred hhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 667777777677889999875 23333 679999999998887554 567899998643
No 162
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.84 E-value=0.015 Score=64.49 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=54.7
Q ss_pred CCCCCcEEEEEE--CC---EEEeeeeeecCCCCCeeeeEEEEec-----CCCCcEEEEEEEecCCcC-CeeeEeEEEece
Q 007000 85 KITSDPYVTVSI--CG---AVIGRTFVISNSESPVWMQHFNVPV-----AHSAAEVHFVVKDNDFVG-SQIMGAVGIPVE 153 (622)
Q Consensus 85 ~g~~DPYv~V~l--~~---~~~~kT~vi~~t~nPvWNE~f~~~v-----~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~ 153 (622)
.+++|||..+.- +. ....+|+++++++||.|-+. .++. .+....+.+.+||++.-+ +++||++..++.
T Consensus 154 f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~ 232 (529)
T KOG1327|consen 154 FSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLS 232 (529)
T ss_pred cccCCcceEEEEecCCCceeeccccceeccCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHH
Confidence 356899998754 22 34469999999999999984 2222 233467889999999887 599999999998
Q ss_pred eecC
Q 007000 154 KLCS 157 (622)
Q Consensus 154 ~l~~ 157 (622)
++..
T Consensus 233 ~~~~ 236 (529)
T KOG1327|consen 233 ELQE 236 (529)
T ss_pred Hhcc
Confidence 8864
No 163
>PLN02866 phospholipase D
Probab=95.65 E-value=0.051 Score=64.79 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCC----CCchhHH
Q 007000 215 PLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDG----SNTLMLG 290 (622)
Q Consensus 215 ~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~----~~g~~l~ 290 (622)
+.+..+++|++.....- -.|-+..-.....+.+++|++|+|.|||+.=-|-... ..+. ..+..|.
T Consensus 705 ~~~~~c~~QivRS~~~W---------S~G~~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~--~~~~~i~N~I~~AL~ 773 (1068)
T PLN02866 705 GPRVSCRCQVIRSVSQW---------SAGTSQVEESIHAAYCSLIEKAEHFIYIENQFFISGL--SGDDTIQNRVLEALY 773 (1068)
T ss_pred CCCCeEEEEEEeecccc---------cCCCCchHHHHHHHHHHHHHhcccEEEEecccccccc--cccccccchHHHHHH
Confidence 34556778887754431 1233333345899999999999999999864221100 0011 1345555
Q ss_pred HHHHhhhcCCCeEEEEE
Q 007000 291 DLLKIKSQEGVRVLILA 307 (622)
Q Consensus 291 ~~L~~aa~rGV~VriLv 307 (622)
+.+++|+++|=+-++++
T Consensus 774 ~RI~rA~~~~~~frviI 790 (1068)
T PLN02866 774 RRILRAHKEKKCFRVII 790 (1068)
T ss_pred HHHHHHHhcCCCeEEEE
Confidence 55558888775444443
No 164
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.61 E-value=0.0089 Score=63.62 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCcEEEEEEC----CEEEeeeeeecCCCCCeeeeEEEEecCC---CC---------cEEEEEEEecCCcC--CeeeEeEE
Q 007000 88 SDPYVTVSIC----GAVIGRTFVISNSESPVWMQHFNVPVAH---SA---------AEVHFVVKDNDFVG--SQIMGAVG 149 (622)
Q Consensus 88 ~DPYv~V~l~----~~~~~kT~vi~~t~nPvWNE~f~~~v~~---~~---------~~L~l~V~D~d~~~--dd~IG~~~ 149 (622)
.|-||++.+- .....||.+++++.+|.++|.|.+.+.. .. .-+.|++++...+- |.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 4778888772 2233499999999999999999998865 21 23689999987653 77999999
Q ss_pred EeceeecCCCeeeecccccCCCCCccccCceEEEEEEeec
Q 007000 150 IPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 150 i~L~~l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
+.|.-|...-.+...++|.+ |+.. -+|.+.+.++...
T Consensus 468 ikle~Len~cei~e~~~l~D--GRK~-vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKD--GRKA-VGGKLEVKVRIRQ 504 (523)
T ss_pred eeehhhhcccchhhceeccc--cccc-cCCeeEEEEEEec
Confidence 99998887777788899964 4422 4578888887653
No 165
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=95.59 E-value=0.015 Score=61.67 Aligned_cols=143 Identities=19% Similarity=0.208 Sum_probs=87.7
Q ss_pred CcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHh
Q 007000 216 LRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKI 295 (622)
Q Consensus 216 ~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~ 295 (622)
+..|..+.+++..++ +|+.+.+.|.+|+++|.++.- ||-. ....+++.|..
T Consensus 25 ~~~~d~idiihep~~--------------------fy~~lk~~I~~aq~Ri~lasL------YlG~---~E~elv~cl~~ 75 (469)
T KOG3964|consen 25 YVNGDDIDIIHEPPE--------------------FYQRLKKLIKKAQRRIFLASL------YLGK---LERELVDCLSN 75 (469)
T ss_pred eeccccceeecCCHH--------------------HHHHHHHHHHHhhheeeeeee------ccch---hHHHHHHHHHH
Confidence 456677888877665 999999999999999999876 3432 45778888887
Q ss_pred hhc--CCCeEEEEEeCCC-cccccccccccCccCCChHHHHhhhcCCCeEEEec--CCCCCCCccccccccccccccccc
Q 007000 296 KSQ--EGVRVLILAWDDP-TSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLC--PRSAGKGHSFVKKQEVGTIYTHHQ 370 (622)
Q Consensus 296 aa~--rGV~VriLv~D~~-gs~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~--~~~~~~~~~~~~~~~~~~~~r~Hr 370 (622)
+-. .-.+|.||+ |.. |.+..++... .+ ...--.+++. ..|++.++ |...|........++.....-.|.
T Consensus 76 aL~~~~~L~v~iLl-D~~rgtr~~~~~~s--~l-lp~~l~kkf~--e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhm 149 (469)
T KOG3964|consen 76 ALEKNPSLKVSILL-DFLRGTRELPNSCS--AL-LPVWLGKKFP--ERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHM 149 (469)
T ss_pred HhccCCCcEEEeeh-hhhhhcccCcccch--hh-chHHHhhhhh--hhhceeeecChhhhhhhhhcCchhhccccchhhh
Confidence 754 569999997 876 3333332110 00 0000111222 23444443 433332211111112223467899
Q ss_pred ceEEEccCCccCcceeEEEEcccccCCcccCC
Q 007000 371 KTVVVDADAGQFKRKIIAFVGGLDLCKGRYDT 402 (622)
Q Consensus 371 K~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~ 402 (622)
|+.-+|+ -..+-|.|++++|+..
T Consensus 150 KIy~fdd---------eviiSGanls~dyfTN 172 (469)
T KOG3964|consen 150 KIYGFDD---------EVIISGANLSNDYFTN 172 (469)
T ss_pred hhhcccH---------hhhcccccchhhhhcc
Confidence 9999998 3478999999998754
No 166
>PLN02270 phospholipase D alpha
Probab=95.40 E-value=0.061 Score=62.80 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCC-----------CCchhHHHHHHhhh--cCCCeEEEEE
Q 007000 248 HESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDG-----------SNTLMLGDLLKIKS--QEGVRVLILA 307 (622)
Q Consensus 248 ~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~-----------~~g~~l~~~L~~aa--~rGV~VriLv 307 (622)
..+...+++.+|++|+++|||+.=-|.....-+..+ .++..|...|.+|. .++-+|+|++
T Consensus 497 ~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 497 DRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 456899999999999999999765443332222211 13466777777764 4668888886
No 167
>PLN03008 Phospholipase D delta
Probab=95.18 E-value=0.029 Score=65.52 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcccEEEEEEEeecceeeEEeCC-------CCchhHHHHHHhhhc--CCCeEEEEE
Q 007000 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDG-------SNTLMLGDLLKIKSQ--EGVRVLILA 307 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~-------~~g~~l~~~L~~aa~--rGV~VriLv 307 (622)
+..+.+++|++|++.||||.=-|....+.|... .++..|..+|.+|.+ ++-+|+|++
T Consensus 568 Iq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 568 IQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred HHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 689999999999999999765444443343221 135777777777654 567788876
No 168
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=95.01 E-value=0.17 Score=53.62 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcc-----cEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCcc
Q 007000 251 CWQDVYDAINQAR-----RLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (622)
Q Consensus 251 ~f~~l~~aI~~Ar-----~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~ 325 (622)
-|..+++.|++|- .+|.++-|.+. ....+.++|.+||+.|-+|.+++ .---.+. .
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~a----------~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFD-----E---- 78 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRVA----------SNSPIVNALIEAAENGKQVTVLV-ELKARFD-----E---- 78 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS-----------TT-HHHHHHHHHHHTT-EEEEEE-STTSSST-----T----
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEecC----------CCCHHHHHHHHHHHcCCEEEEEE-EEecccc-----H----
Confidence 5777888898873 58888888432 24889999999999999999998 4221110 0
Q ss_pred CCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCC
Q 007000 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (622)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H 405 (622)
..+-.+.+.|+++|++|.+- .. .+--|.|+++|=-...+ +-++++++|.=|.... |
T Consensus 79 -e~Ni~Wa~~Le~aGv~ViyG--~~--------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~---T--- 134 (352)
T PF13090_consen 79 -ENNIHWAKRLEEAGVHVIYG--VP--------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK---T--- 134 (352)
T ss_dssp -CCCCCCCHHHHHCT-EEEE----T--------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SSTT---H---
T ss_pred -HHHhHHHhhHHhcCeEEEcC--CC--------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc---c---
Confidence 12223556789999999883 21 14489999999542211 2346788877665442 0
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChH-HHHHHHHHHHH
Q 007000 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEER 458 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpa-v~dl~~~F~~~ 458 (622)
..-+-|+.+.-..|. +.|+...|..-
T Consensus 135 ---------------------------Ar~YtD~~l~Ta~~~i~~D~~~~F~~l 161 (352)
T PF13090_consen 135 ---------------------------ARIYTDLSLFTADPEIGADVAKLFNYL 161 (352)
T ss_dssp ---------------------------CCCEEEEEEEE--HHHHHHHHHHHHHH
T ss_pred ---------------------------hhheecceeecCCHHHHHHHHHHHHHH
Confidence 124678888777755 88999988664
No 169
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.01 E-value=0.18 Score=48.12 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=56.0
Q ss_pred ceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCCe
Q 007000 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESPV 114 (622)
Q Consensus 40 ~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l--~~~~~~---kT~vi~~t~nPv 114 (622)
+..|+|+|.+|+++.-.+ .+|-||.+.+ +++... .|+.+. ..++.
T Consensus 7 ~~~~~v~i~~~~~~~~~~-----------------------------~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~ 56 (158)
T cd08398 7 NSNLRIKILCATYVNVND-----------------------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPR 56 (158)
T ss_pred CCCeEEEEEeeccCCCCC-----------------------------cCeEEEEEEEEECCEEccCeeEecccC-CCCCc
Confidence 346899999999987422 2577888876 444332 333333 46799
Q ss_pred eeeEEEEec--CCC--CcEEEEEEEecCCcC-----CeeeEeEEEecee
Q 007000 115 WMQHFNVPV--AHS--AAEVHFVVKDNDFVG-----SQIMGAVGIPVEK 154 (622)
Q Consensus 115 WNE~f~~~v--~~~--~~~L~l~V~D~d~~~-----dd~IG~~~i~L~~ 154 (622)
|||-++|++ .+. ...|.|+||+....+ ...||.+.++|=+
T Consensus 57 WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 57 WNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred cceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEEC
Confidence 999777765 332 378999999965321 2468888887743
No 170
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.91 E-value=0.27 Score=52.50 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred EEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 007000 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (622)
Q Consensus 43 L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~ 122 (622)
+-|.|+++++.+... ...-.|..++++... .|--+.-+..|.||..+...
T Consensus 2 ivl~i~egr~F~~~~-----------------------------~~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE 51 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP-----------------------------RHPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWE 51 (340)
T ss_pred EEEEEecccCCCCCC-----------------------------CccEEEEEEeCCcee-eecCCCCCCCceeecceeee
Confidence 458899999988542 134567788888888 78888889999999988776
Q ss_pred cCC--------CCcEEEEEEEecCCc-C-CeeeEeEEEeceee---cCC--CeeeecccccCCCCCccccCceEEEEEEe
Q 007000 123 VAH--------SAAEVHFVVKDNDFV-G-SQIMGAVGIPVEKL---CSG--DKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (622)
Q Consensus 123 v~~--------~~~~L~l~V~D~d~~-~-dd~IG~~~i~L~~l---~~g--~~~~~W~~L~~~~g~~~k~~G~I~L~l~f 187 (622)
+.. ....|+|.+|-.|.. + .+.||.+.++|+.. ..+ .....||+|+....+..+...++.+.+..
T Consensus 52 ~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 52 CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 532 226789999887733 3 68999999999988 544 56789999997643332334567777666
Q ss_pred eccc
Q 007000 188 TPVE 191 (622)
Q Consensus 188 ~p~~ 191 (622)
....
T Consensus 132 e~~~ 135 (340)
T PF12416_consen 132 EDDS 135 (340)
T ss_pred eccc
Confidence 5433
No 171
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.76 E-value=0.075 Score=62.04 Aligned_cols=148 Identities=15% Similarity=0.073 Sum_probs=76.7
Q ss_pred CccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeC---C----CCchhHHHHHHhhhcCC--CeEEEEEeCCCcc
Q 007000 243 GVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRD---G----SNTLMLGDLLKIKSQEG--VRVLILAWDDPTS 313 (622)
Q Consensus 243 ~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~---~----~~g~~l~~~L~~aa~rG--V~VriLv~D~~gs 313 (622)
|..+.....=.+..++|++|+|.|||+.=-| |-.. + ..+..|.+-+.+|.++| -+|+|++==.+|-
T Consensus 559 g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfF-----i~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~Pgf 633 (887)
T KOG1329|consen 559 GINEIEDSIQNAYVKAIRNAEHFIYIENQFF-----IGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGF 633 (887)
T ss_pred CCCchHHHHHHHHHHHHHhccceEEEeeeeE-----EeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccc
Confidence 3344445578999999999999999975322 2211 1 23577777777777766 6777776111100
Q ss_pred c--ccccccc-cCccCC-------ChHHHHhhhcCCCeEE-EecCCCCCCCcccc---cccccccccccccceEEEccCC
Q 007000 314 R--SILGYKT-DGIMST-------NDEETRRFFKHSSVQV-LLCPRSAGKGHSFV---KKQEVGTIYTHHQKTVVVDADA 379 (622)
Q Consensus 314 ~--~~~~~~~-~~~~~~-------~~~~~~~~l~~~gv~v-~~~~~~~~~~~~~~---~~~~~~~~~r~HrK~vVIDg~~ 379 (622)
- ..++... ..++.+ .-......|++.|+.= .+.....-.....+ .....+..-=-|.|++|||+
T Consensus 634 EG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD-- 711 (887)
T KOG1329|consen 634 EGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDD-- 711 (887)
T ss_pred cCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecC--
Confidence 0 1111100 011111 1122344556555541 11000000000000 00011111225999999999
Q ss_pred ccCcceeEEEEcccccCCcccCCC
Q 007000 380 GQFKRKIIAFVGGLDLCKGRYDTP 403 (622)
Q Consensus 380 ~~~~~~~vafvGG~Ni~~~~~d~~ 403 (622)
+.+.+|+.||.+...+..
T Consensus 712 ------~~vIIGSANINqRSm~G~ 729 (887)
T KOG1329|consen 712 ------EYVIIGSANINQRSMLGN 729 (887)
T ss_pred ------CEEEEeecccchhhccCC
Confidence 899999999999776654
No 172
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.36 E-value=0.86 Score=42.10 Aligned_cols=117 Identities=22% Similarity=0.358 Sum_probs=75.0
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEE--Eeeeeeec-CCCCCeeee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAV--IGRTFVIS-NSESPVWMQ 117 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~--~~kT~vi~-~t~nPvWNE 117 (622)
-.+.|+|.+..+++..+ ..-||+..-++.. .++|.... .+..=.|||
T Consensus 7 f~~~l~i~~l~~~p~~~------------------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e 56 (143)
T PF10358_consen 7 FQFDLTIHELENLPSSN------------------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNE 56 (143)
T ss_pred EEEEEEEEEeECcCCCC------------------------------CEEEEEEEECCCCccceeeeeeeccccEEEEee
Confidence 45789999999888521 2345555555543 33555433 355579999
Q ss_pred EEEEecCC---------CCcEEEEEEEecCCcCC-eeeEeEEEeceeecCC--CeeeecccccCCCCCccccCceEEEEE
Q 007000 118 HFNVPVAH---------SAAEVHFVVKDNDFVGS-QIMGAVGIPVEKLCSG--DKIEGAFPILNSSRKPCKAGAVLSLSI 185 (622)
Q Consensus 118 ~f~~~v~~---------~~~~L~l~V~D~d~~~d-d~IG~~~i~L~~l~~g--~~~~~W~~L~~~~g~~~k~~G~I~L~l 185 (622)
.|.+++.- ....++|.|+.....+. ..+|.+.|+|.+.... .....-++|.... +....+++.+
T Consensus 57 ~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~----~~~a~L~isi 132 (143)
T PF10358_consen 57 EFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK----KSNATLSISI 132 (143)
T ss_pred EEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC----CCCcEEEEEE
Confidence 98876421 11457888887654343 5999999999999863 3445556664431 2345788888
Q ss_pred Eeeccc
Q 007000 186 QYTPVE 191 (622)
Q Consensus 186 ~f~p~~ 191 (622)
++.++.
T Consensus 133 ~~~~~~ 138 (143)
T PF10358_consen 133 SLSELR 138 (143)
T ss_pred EEEECc
Confidence 887654
No 173
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=93.71 E-value=0.27 Score=55.74 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=65.1
Q ss_pred cccchhHHHHHHHHHHhccc-----EEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccc
Q 007000 245 QFNHESCWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGY 319 (622)
Q Consensus 245 ~~~~~~~f~~l~~aI~~Ar~-----~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~ 319 (622)
||. -|+.+.+.|++|-. .|-+.-| |- .....|.++|.+||..|-+|-+|| .---
T Consensus 350 PYe---SF~~Vv~fl~qAA~DP~VLAIKqTLY---------Rt-~~dSpIV~ALi~AA~nGKqVtvlV-ELkA------- 408 (696)
T COG0855 350 PYE---SFEPVVEFLRQAAADPDVLAIKQTLY---------RT-SKDSPIVRALIDAAENGKQVTVLV-ELKA------- 408 (696)
T ss_pred chh---hhHHHHHHHHHhhcCCCeEEEEEEEE---------ec-CCCCHHHHHHHHHHHcCCeEEEEE-EEhh-------
Confidence 564 78999999999853 4555666 22 223789999999999999999998 3111
Q ss_pred cccCccCCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEcc
Q 007000 320 KTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDA 377 (622)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg 377 (622)
++=...+-.+.+.|+++|++|++- .. .+..|.|+++|=-
T Consensus 409 ---RFDEE~NI~WAk~LE~AGvhVvyG--~~--------------glKtHAKm~lVvR 447 (696)
T COG0855 409 ---RFDEEANIHWAKRLERAGVHVVYG--VV--------------GLKTHAKMLLVVR 447 (696)
T ss_pred ---hcChhhhhHHHHHHHhCCcEEEec--cc--------------ceeeeeeEEEEEE
Confidence 011123345778899999999982 21 1448999999853
No 174
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=93.21 E-value=0.62 Score=45.08 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=46.6
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCCee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESPVW 115 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l--~~~~~~---kT~vi~~t~nPvW 115 (622)
..|+|+|..+.+|.-.+ ...+=||.+.+ |++... .|+.+.-+.++.|
T Consensus 8 ~~f~i~i~~~~~~~~~~----------------------------~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~W 59 (173)
T cd08693 8 EKFSITLHKISNLNAAE----------------------------RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVW 59 (173)
T ss_pred CCEEEEEEEeccCccCC----------------------------CCceEEEEEEEEECCEEccCceEccccCCCCcccc
Confidence 46899999999997411 12456777655 444332 4444444567999
Q ss_pred eeEEEEec--CCC--CcEEEEEEEecC
Q 007000 116 MQHFNVPV--AHS--AAEVHFVVKDND 138 (622)
Q Consensus 116 NE~f~~~v--~~~--~~~L~l~V~D~d 138 (622)
||.++|++ .+. ...|.|+||+..
T Consensus 60 newl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 60 NETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred ceeEEcccchhcCChhHeEEEEEEEec
Confidence 99877765 332 378999999854
No 175
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=91.99 E-value=0.98 Score=42.85 Aligned_cols=103 Identities=15% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCcEEE--EEECCEEEeeeeeecCCCCCeeeeEEEEecCCC--------------CcEEEEEEEecCCcC-CeeeEeEEE
Q 007000 88 SDPYVT--VSICGAVIGRTFVISNSESPVWMQHFNVPVAHS--------------AAEVHFVVKDNDFVG-SQIMGAVGI 150 (622)
Q Consensus 88 ~DPYv~--V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~--------------~~~L~l~V~D~d~~~-dd~IG~~~i 150 (622)
.+.-.. +.++++++ +|+-+.-+.+|.++|.|-|+++.. .+.+.+.|.-.|..+ ..++|+..+
T Consensus 32 ~~s~~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~l 110 (156)
T PF15627_consen 32 VCSTFTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFL 110 (156)
T ss_pred CceEEEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeecee
Confidence 344444 45578888 999999999999999999887543 144667777666655 579999999
Q ss_pred eceeecCCCeeeecc--cccCCCCCccccCceEEEEEEeeccc
Q 007000 151 PVEKLCSGDKIEGAF--PILNSSRKPCKAGAVLSLSIQYTPVE 191 (622)
Q Consensus 151 ~L~~l~~g~~~~~W~--~L~~~~g~~~k~~G~I~L~l~f~p~~ 191 (622)
+-+.+...+....++ .|...........|-+.++++..|..
T Consensus 111 dWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 111 DWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred hHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 887766433321233 33322222112457888888877643
No 176
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.59 E-value=1.2 Score=42.13 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=55.7
Q ss_pred eEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCCee
Q 007000 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESPVW 115 (622)
Q Consensus 41 g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l--~~~~~~---kT~vi~~t~nPvW 115 (622)
..|+|+|....++...+ ....+-||.+.+ +++... .|+....+.++.|
T Consensus 8 ~~~~i~i~~~~~~~~~~---------------------------~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~W 60 (156)
T cd08380 8 FNLRIKIHGITNINLLD---------------------------SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTW 60 (156)
T ss_pred CCeEEEEEeeccccccC---------------------------CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcc
Confidence 46788888888876411 122466777766 343221 2332332478999
Q ss_pred eeEEEEec--CC--CCcEEEEEEEecCCcC---CeeeEeEEEecee
Q 007000 116 MQHFNVPV--AH--SAAEVHFVVKDNDFVG---SQIMGAVGIPVEK 154 (622)
Q Consensus 116 NE~f~~~v--~~--~~~~L~l~V~D~d~~~---dd~IG~~~i~L~~ 154 (622)
||.++|++ .+ ....|.|+||+.+..+ ...||.+.++|=+
T Consensus 61 ne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 61 NEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 99877764 33 2378999999976543 4689999988754
No 177
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=91.30 E-value=0.83 Score=43.61 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=47.9
Q ss_pred CCCCCcEEEEEE--CCEEEe---eeeeecCCCCCeeeeEEEEec--CCC--CcEEEEEEEecCCcC-CeeeEeEEEece
Q 007000 85 KITSDPYVTVSI--CGAVIG---RTFVISNSESPVWMQHFNVPV--AHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVE 153 (622)
Q Consensus 85 ~g~~DPYv~V~l--~~~~~~---kT~vi~~t~nPvWNE~f~~~v--~~~--~~~L~l~V~D~d~~~-dd~IG~~~i~L~ 153 (622)
...+|-||.+.+ +++... .|+.+.-+..+.|||-.+|++ .+. .+.|.|+|||.+..+ ...||.++++|=
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 344788898877 444331 455555567789999877775 332 378999999977554 568999888874
No 178
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=90.19 E-value=0.15 Score=48.67 Aligned_cols=49 Identities=27% Similarity=0.222 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHccceEEEEecccccc-----ccCcccc-----cCcCCcccCchhhc
Q 007000 543 MSIHTAYVKAIRAAQHFIYIENQYFLGS-----SFNWDSH-----RDLGESICDNEQMK 591 (622)
Q Consensus 543 ~~I~~ay~~aI~~A~~~IyIenqYFip~-----~~~~~~~-----~~~~~~~~~~~~~~ 591 (622)
..+.+.++++|.+|+++|+|+++||.|+ ..+.+.+ +++.+++++.....
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~rGv~V~il~~~~~~ 78 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLITEYGPVILDALLAAARRGVKVRILVDEWSN 78 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccccccchHHHHHHHHHHHCCCEEEEEEccccc
Confidence 5899999999999999999999999973 3333322 56667766665533
No 179
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=90.10 E-value=1.4 Score=42.39 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=56.2
Q ss_pred eceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeec--C--
Q 007000 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVIS--N-- 109 (622)
Q Consensus 39 ~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l--~~~~~~---kT~vi~--~-- 109 (622)
....|+|+|.++.+++.... ....|=||.+.+ +++... .|+... +
T Consensus 6 v~~~~~i~v~~~h~~~~~~~--------------------------~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f 59 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWV--------------------------QSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSF 59 (171)
T ss_pred ccccEEEEEEEeecCChHHh--------------------------hccccEEEEEEEEECCEECcCceeccccccccCc
Confidence 34678999999999986431 123677888876 444332 233211 1
Q ss_pred CCCCeeeeEEEEec--CC--CCcEEEEEEEecCCcC----------CeeeEeEEEece
Q 007000 110 SESPVWMQHFNVPV--AH--SAAEVHFVVKDNDFVG----------SQIMGAVGIPVE 153 (622)
Q Consensus 110 t~nPvWNE~f~~~v--~~--~~~~L~l~V~D~d~~~----------dd~IG~~~i~L~ 153 (622)
...+.|||.++|++ .+ ....|.|+||+....+ ...||.+.++|=
T Consensus 60 ~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 60 FPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred cccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 23577999877765 22 2478999999865432 246777777664
No 180
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.63 E-value=2.2 Score=39.65 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=41.6
Q ss_pred cEEEEEE--CCEEEe----eeeeecCC-CCCeeeeEEEEe--cCC--CCcEEEEEEEecCCcC-C----eeeEeEEEece
Q 007000 90 PYVTVSI--CGAVIG----RTFVISNS-ESPVWMQHFNVP--VAH--SAAEVHFVVKDNDFVG-S----QIMGAVGIPVE 153 (622)
Q Consensus 90 PYv~V~l--~~~~~~----kT~vi~~t-~nPvWNE~f~~~--v~~--~~~~L~l~V~D~d~~~-d----d~IG~~~i~L~ 153 (622)
-||.+.+ |++... .|+.+.-+ .++.|||.+.|+ +.+ ....|.|+|++.+... . ..||.+.++|=
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 3555555 444332 45555545 799999976665 433 3478999999876554 3 68999888874
Q ss_pred e
Q 007000 154 K 154 (622)
Q Consensus 154 ~ 154 (622)
+
T Consensus 84 d 84 (142)
T PF00792_consen 84 D 84 (142)
T ss_dssp -
T ss_pred C
Confidence 3
No 181
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=88.57 E-value=0.64 Score=52.02 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=60.7
Q ss_pred EEEeeeeeecCCCCCeeeeEEEEecCCCC-cEEEEEEEecCCc----C-CeeeEeEEEeceeecCCCeeeecccccCCCC
Q 007000 99 AVIGRTFVISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDFV----G-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSR 172 (622)
Q Consensus 99 ~~~~kT~vi~~t~nPvWNE~f~~~v~~~~-~~L~l~V~D~d~~----~-dd~IG~~~i~L~~l~~g~~~~~W~~L~~~~g 172 (622)
.++++|.++.+.+||.|-+.|.+....+. +.+++.++|.+.. . .+|+|++...++++........-+.| ..+
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~--~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLL--KPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhc--ccC
Confidence 45679999999999999999999887765 8899999996643 2 68999999999888754333222333 222
Q ss_pred CccccCceEEEEEEe
Q 007000 173 KPCKAGAVLSLSIQY 187 (622)
Q Consensus 173 ~~~k~~G~I~L~l~f 187 (622)
++. ..|.|.+.++-
T Consensus 118 ~~~-~~g~iti~aee 131 (529)
T KOG1327|consen 118 KNA-GSGTITISAEE 131 (529)
T ss_pred ccC-CcccEEEEeec
Confidence 322 34566665553
No 182
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=87.86 E-value=1.1 Score=46.66 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=67.4
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCC
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSES 112 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~~~~~~kT~vi~~t~n 112 (622)
-++.+-..|.|.+.+++.++|+-.... ++-+.+-||++..+.+-..||.+.....-
T Consensus 43 ~l~~~s~tGiL~~H~~~GRGLr~~p~~------------------------kglt~~~ycVle~drqh~aRt~vrs~~~~ 98 (442)
T KOG1452|consen 43 HLRLVSSTGILYFHAYNGRGLRMTPQQ------------------------KGLTVCFYCVLEPDRQHPARTRVRSSGPG 98 (442)
T ss_pred eeeeecccceEEEEEecccccccChhc------------------------cCceeeeeeeeeecccCccccccccCCCC
Confidence 378888899999999999999854321 13347889999999887778887776767
Q ss_pred CeeeeEEEEecCCCCcEEEEEEEecCCcC-C--eeeE
Q 007000 113 PVWMQHFNVPVAHSAAEVHFVVKDNDFVG-S--QIMG 146 (622)
Q Consensus 113 PvWNE~f~~~v~~~~~~L~l~V~D~d~~~-d--d~IG 146 (622)
=.|.|+|.+.+... ..+.+-||.|+... . ...|
T Consensus 99 f~w~e~F~~Dvv~~-~vl~~lvySW~pq~RHKLC~~g 134 (442)
T KOG1452|consen 99 FAWAEDFKHDVVNI-EVLHYLVYSWPPQRRHKLCHLG 134 (442)
T ss_pred ccchhhceeecccc-eeeeEEEeecCchhhccccccc
Confidence 78999999887633 46778899988654 2 3466
No 183
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.71 E-value=5.6 Score=38.67 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=26.0
Q ss_pred eeeeecCCCCCeeeeEEEEec--CCC--CcEEEEEEEecC
Q 007000 103 RTFVISNSESPVWMQHFNVPV--AHS--AAEVHFVVKDND 138 (622)
Q Consensus 103 kT~vi~~t~nPvWNE~f~~~v--~~~--~~~L~l~V~D~d 138 (622)
+|+...-+.+|.|||-++|++ .+. ...|.|+||+..
T Consensus 49 ~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 49 RTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred eeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 555555577899999777665 332 378999999853
No 184
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=86.36 E-value=4 Score=39.23 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCcEEEEEECCEEEeeeeeecC--CCCCeeeeEEEEecCCCCcEEEEEEEecCCcCCeeeEeEEEece
Q 007000 88 SDPYVTVSICGAVIGRTFVISN--SESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVE 153 (622)
Q Consensus 88 ~DPYv~V~l~~~~~~kT~vi~~--t~nPvWNE~f~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~ 153 (622)
..-|++|.++++.+.+|+...- ...=-+||.|.+.+...-+.|.|.||......+..|+++.+|+-
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP 104 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVP 104 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCC
Confidence 4679999999999988877543 33467899999998665589999999988766899999999974
No 185
>PRK13912 nuclease NucT; Provisional
Probab=85.52 E-value=0.44 Score=46.16 Aligned_cols=47 Identities=19% Similarity=0.044 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHccceEEEEeccccccccCcccc-----cCcCCcccCchhh
Q 007000 543 MSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH-----RDLGESICDNEQM 590 (622)
Q Consensus 543 ~~I~~ay~~aI~~A~~~IyIenqYFip~~~~~~~~-----~~~~~~~~~~~~~ 590 (622)
..+...++++|.+|+++|+|+. |++++..+.++| |++.+++++++..
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~~~i~~aL~~Aa~RGV~VrIlld~~~ 83 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTHKDIAKALKSAAKRGVKISIIYDYES 83 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEchHHHHHHHHHHHHCCCEEEEEEeCcc
Confidence 4678999999999999999985 888876666544 7888888988763
No 186
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=83.60 E-value=3.1 Score=40.44 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=31.3
Q ss_pred eeeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC----CeeeEeEEEecee
Q 007000 102 GRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG----SQIMGAVGIPVEK 154 (622)
Q Consensus 102 ~kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~----dd~IG~~~i~L~~ 154 (622)
..|.|...+.+|.|+|+|.+.++.. ...|.|++++..... ...+|.+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3788888889999999999877543 367889999865432 2578887777764
No 187
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=80.10 E-value=3.7 Score=40.30 Aligned_cols=51 Identities=20% Similarity=0.490 Sum_probs=36.0
Q ss_pred eeeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC--C-eeeEeEEEec
Q 007000 102 GRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG--S-QIMGAVGIPV 152 (622)
Q Consensus 102 ~kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~--d-d~IG~~~i~L 152 (622)
.+|.|..-+.+|.|||++.+.++.. ...|.|++++..... + ..+|-+-+||
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4898988899999999999887543 367888887744321 2 3566555555
No 188
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=79.74 E-value=2.1 Score=39.67 Aligned_cols=52 Identities=10% Similarity=-0.081 Sum_probs=37.9
Q ss_pred CCCcCCCeEEEeecCcCCCCccceeEecCC-ccccchhH-HHHHHHHHHhcccEEEEEEE
Q 007000 214 FPLRRGGKVTLYQDAHAHDGCLADLKLDGG-VQFNHESC-WQDVYDAINQARRLIYITGW 271 (622)
Q Consensus 214 ~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~-~~~~~~~~-f~~l~~aI~~Ar~~I~I~~y 271 (622)
.|++ +|.|+.++....+++++++..+. +|+.||+| |..-.+ .. .-++.|+.|
T Consensus 36 dpYV---KV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~-~~--~v~l~v~v~ 89 (135)
T cd08692 36 SFFV---KVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ-EH--GIQFLIKLY 89 (135)
T ss_pred CcEE---EEEEEECCCcceeecCccEECCCCCceecceEEEeCCch-hh--eeEEEEEEE
Confidence 5676 89999999999999999999995 68888887 553332 21 244555555
No 189
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=79.30 E-value=5.9 Score=34.17 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=46.4
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEecCCCCcEEEEEEEecCCcCCeeeEeEEEecee
Q 007000 88 SDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEK 154 (622)
Q Consensus 88 ~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~~ 154 (622)
++-.+++++++..+|+|.-.. ..+..|++.|+|.+. ...+|++.||=.|. ..+=|...+.|++
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd 71 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLED 71 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhh
Confidence 677899999999998887654 457899999999985 55789999876553 2233444455655
No 190
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=77.68 E-value=7.8 Score=45.73 Aligned_cols=203 Identities=16% Similarity=0.168 Sum_probs=111.8
Q ss_pred cceeEeeceEEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeec
Q 007000 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVIS 108 (622)
Q Consensus 33 ~~~~~~~~g~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l~----~~~~~kT~vi~ 108 (622)
..-..+..|.+.+.+.+|+.|++- ..-||...++ ....++|+++.
T Consensus 751 D~eSpl~ygflh~~vhsat~lkqs-------------------------------~~lY~Td~v~e~~~~~s~~st~~ia 799 (1112)
T KOG4269|consen 751 DDESPLLYGFLHVIVHSATGLKQS-------------------------------RNLYCTDEVDEFGYFVSKASTRVIA 799 (1112)
T ss_pred cccCcccccceeeeeccccccccc-------------------------------cceeeehhhhhhccccccccceeee
Confidence 344566679999999999988741 4668877664 24456999999
Q ss_pred CCCCCeeeeEEEEecCCCCcEEEEEEEecCCc----------C-CeeeEeEEEeceeecCCCeeeeccccc-CCCCCccc
Q 007000 109 NSESPVWMQHFNVPVAHSAAEVHFVVKDNDFV----------G-SQIMGAVGIPVEKLCSGDKIEGAFPIL-NSSRKPCK 176 (622)
Q Consensus 109 ~t~nPvWNE~f~~~v~~~~~~L~l~V~D~d~~----------~-dd~IG~~~i~L~~l~~g~~~~~W~~L~-~~~g~~~k 176 (622)
+|.-|-||++|.+++. ..+.+.|..++.+.- . +...|+..+.+.--. .....|+.-. +.+|
T Consensus 800 dT~~~~~npe~hv~~~-~sqS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~--~~d~d~~t~v~~~n~---- 872 (1112)
T KOG4269|consen 800 DTAEPQWNPEKHVPVI-ESQSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQP--HHDADWYTQVIDMNG---- 872 (1112)
T ss_pred cccCCCCChhcccchh-hccccchhhhcccchHHHhhhccchhhcccccccccccCccc--cccccCccChhhhcC----
Confidence 9999999999999875 234555655554421 1 334555554443111 1123354321 1122
Q ss_pred cCceEEEEEEeeccccccccccCCCCCCCccCC-CCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhHHHHH
Q 007000 177 AGAVLSLSIQYTPVENMSLYYRGVGSGPDYIGV-PGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDV 255 (622)
Q Consensus 177 ~~G~I~L~l~f~p~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~l 255 (622)
..+...+.|.+..... .+.+.. +.+.|..-.+-++.+.+--. +.|.||. .| +.
T Consensus 873 --~~ve~~v~~ssss~Ss---------~~~~~~~qTgIFG~~~~~kisv~t~~n-----------~s~lP~V---Vy-rC 926 (1112)
T KOG4269|consen 873 --IVVETSVKFSSSSTSS---------KRKPSVKQTGIFGLPLNVKISVVTKRN-----------VSGLPYV---VY-RC 926 (1112)
T ss_pred --cceeeeEEeccccccc---------cCCCcceeceeccccceeeEeeeeeec-----------ccCCchH---HH-HH
Confidence 2466777776643211 111111 11123322234555554322 4567774 34 45
Q ss_pred HHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeC
Q 007000 256 YDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWD 309 (622)
Q Consensus 256 ~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D 309 (622)
++-|+.-|..=..-.|.++ + ..+..++|+++-..||.=-|++-|
T Consensus 927 vEyle~~RgieEeGIyRlS---------G-saT~Ik~Lke~Fd~~~n~di~~~d 970 (1112)
T KOG4269|consen 927 VEYLESCRGIEEEGIYRLS---------G-SATDIKALKEQFDENVNKDILSMD 970 (1112)
T ss_pred HHHHHhccccchhceEEec---------c-cHHHHHHHHHHhccccCchhhhcc
Confidence 5666654432222233221 1 266788999998888776666533
No 191
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=77.26 E-value=14 Score=32.12 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCcEEEEEE--CCEEEe---eeeeecCCCCCeeeeEEEEec--CC--CCcEEEEEEEecC
Q 007000 88 SDPYVTVSI--CGAVIG---RTFVISNSESPVWMQHFNVPV--AH--SAAEVHFVVKDND 138 (622)
Q Consensus 88 ~DPYv~V~l--~~~~~~---kT~vi~~t~nPvWNE~f~~~v--~~--~~~~L~l~V~D~d 138 (622)
+|-||.+.+ +++... .|+.+.-+..+.|||-.+|++ .+ ....|.|+||+..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 477888877 444331 444444355699999777765 33 2378999999843
No 192
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=77.05 E-value=5.6 Score=39.22 Aligned_cols=52 Identities=12% Similarity=0.293 Sum_probs=37.2
Q ss_pred EeeeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC-----CeeeEeEEEec
Q 007000 101 IGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-----SQIMGAVGIPV 152 (622)
Q Consensus 101 ~~kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~-----dd~IG~~~i~L 152 (622)
.++|.|..-+.+|.|||++.+.++.. ...|.|++++..... ...+|.+-+||
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 34888888899999999999877543 367889998754321 23566666665
No 193
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=76.60 E-value=24 Score=37.75 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHhccc----EEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCCcccccccccccCcc
Q 007000 250 SCWQDVYDAINQARR----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (622)
Q Consensus 250 ~~f~~l~~aI~~Ar~----~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~~~~~~~~~~~~ 325 (622)
.+.+-+-+.|+.|+. +|.+-. +.-....+.++|-+|.+.||+|.++| .+.-+. .||..
T Consensus 183 ~~~~lI~~Ei~~a~~G~~a~I~~K~-----------NsL~D~~iI~~Ly~AS~AGV~I~LiV-RGiCcL-~Pgi~----- 244 (352)
T PF13090_consen 183 KLLELIDREIENAKAGKPARIIAKM-----------NSLTDPEIIDKLYEASQAGVKIDLIV-RGICCL-RPGIP----- 244 (352)
T ss_dssp HHHHHHHHHHHHHCTTS-EEEEEEE-----------S-B--HHHHHHHHHHHHTTEEEEEEE-SS-B-C--TTSC-----
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEe-----------cCCCCHHHHHHHHHHHhCCCEEEEEE-eccccc-CCCCC-----
Confidence 356666677777753 343333 33344889999999999999999998 554331 12210
Q ss_pred CCChHHHHhhhcCCCeEEEecCCCCCCCcccccccccccccccccceEEEccCCccCcceeEEEEcccccCCcccCCCCC
Q 007000 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (622)
Q Consensus 326 ~~~~~~~~~~l~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~r~HrK~vVIDg~~~~~~~~~vafvGG~Ni~~~~~d~~~H 405 (622)
=...+|+|.-.- .+|| .|..+...=.+ +....|+|+.||.....+.
T Consensus 245 ----------g~SeNI~V~SIV------gRfL----------EHsRi~~F~n~-----g~~~~yisSADwM~RNl~r--- 290 (352)
T PF13090_consen 245 ----------GLSENIRVISIV------GRFL----------EHSRIYYFGNG-----GDEEVYISSADWMTRNLDR--- 290 (352)
T ss_dssp ----------TCCTTEEEEEE-------SSSE----------E--EEEEE-GC-----CS-EEEEESS-BSHHHHHT---
T ss_pred ----------CCCCCEEEEEec------cccc----------chhheeeecCC-----CCCeEEEEccccccCCCCe---
Confidence 023456655321 1232 56667766431 1267799999998754431
Q ss_pred CCccccccccCCCCCCCCCCCCCCCCCCCCceeeeeEEeChHH-HHHHHHHHHHHhhccC
Q 007000 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAA-YDILTNFEERWLKASK 464 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~D~~~ri~Gpav-~dl~~~F~~~W~~~~~ 464 (622)
-.++.+-|..|.. ..+...+.-.|++..+
T Consensus 291 ------------------------------RVEv~~PI~D~~lk~~l~~il~~~l~Dn~k 320 (352)
T PF13090_consen 291 ------------------------------RVEVAFPIYDPRLKKELKDILDLQLKDNVK 320 (352)
T ss_dssp ------------------------------CEEEEEE--SHHHHHHHHHHHHHCCCTTCS
T ss_pred ------------------------------eEEEEeEECCHHHHHHHHHHHHHhCCcCcc
Confidence 2588999999874 5566677777776544
No 194
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=74.14 E-value=7.9 Score=37.47 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=34.3
Q ss_pred eeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecCCcC------CeeeEeEEEece
Q 007000 103 RTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG------SQIMGAVGIPVE 153 (622)
Q Consensus 103 kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~~~------dd~IG~~~i~L~ 153 (622)
+|.+..+ .+|.|+|+|.+.++.. ...|.|++++.+... ...+|.+.+||-
T Consensus 56 ~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 4444444 9999999999877443 367889998865322 346777777764
No 195
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=72.10 E-value=1.5 Score=39.17 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=18.6
Q ss_pred HHHHHHHccceEEEEecccccccc
Q 007000 549 YVKAIRAAQHFIYIENQYFLGSSF 572 (622)
Q Consensus 549 y~~aI~~A~~~IyIenqYFip~~~ 572 (622)
++++|.+|+++|+|.+|||...+.
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~~i 24 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDPDI 24 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SCHH
T ss_pred CHHHHhccCCEEEEEEEecCcHHH
Confidence 367999999999999999955554
No 196
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=71.81 E-value=19 Score=32.05 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=47.1
Q ss_pred EEEEEECCEEEeeeeeecCCCCCeeeeEEEEecCCC--------CcEEEEEEEecCCcCCeeeEeEEEeceeecCC--Ce
Q 007000 91 YVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHS--------AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSG--DK 160 (622)
Q Consensus 91 Yv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~--------~~~L~l~V~D~d~~~dd~IG~~~i~L~~l~~g--~~ 160 (622)
||.+.+-.-+...|.++. +.+|.+|-+-.+.+.-. ...+.|+++.--......||.+.+++.++... ..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 566766554443677776 89999999766655321 25677887664321246999999999988843 24
Q ss_pred eeecccccCCCCCccccCceEEEEEEee
Q 007000 161 IEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (622)
Q Consensus 161 ~~~W~~L~~~~g~~~k~~G~I~L~l~f~ 188 (622)
...-..|.+..|+ .-|.+.+.++..
T Consensus 81 i~~~~~l~g~~~~---~~g~l~y~~rl~ 105 (107)
T PF11618_consen 81 IHGSATLVGVSGE---DFGTLEYWIRLR 105 (107)
T ss_dssp EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred EEEEEEEeccCCC---eEEEEEEEEEec
Confidence 5556677666665 347787777643
No 197
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=71.18 E-value=13 Score=36.15 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=30.5
Q ss_pred EeeeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecCC
Q 007000 101 IGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDF 139 (622)
Q Consensus 101 ~~kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d~ 139 (622)
.+.|.|...+.+|.|+|+|.+.++.. ...|.|+.++.+.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 34888888899999999999877543 2678889888543
No 198
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.11 E-value=1.3 Score=50.83 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=62.3
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEecCCCCcEEEEEEEecCCcC-CeeeEeEEEeceeecC-CCeeeecc
Q 007000 88 SDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS-GDKIEGAF 165 (622)
Q Consensus 88 ~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~~~~L~l~V~D~d~~~-dd~IG~~~i~L~~l~~-g~~~~~W~ 165 (622)
.|||+.|.+.....+.+.+.+.+..|.|||+|.+.+. ....+.+.|+...... +.+..++++-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 6999999998776667777888999999999999965 3357788888765444 4455555555444442 22346687
Q ss_pred cccCCCCCccccCceEEEEEEeec
Q 007000 166 PILNSSRKPCKAGAVLSLSIQYTP 189 (622)
Q Consensus 166 ~L~~~~g~~~k~~G~I~L~l~f~p 189 (622)
.+. .. |++...+.+.-
T Consensus 107 ~~~-~~-------g~~~~~~~~~~ 122 (694)
T KOG0694|consen 107 LIE-EL-------GTLLKPAALTG 122 (694)
T ss_pred ccc-cc-------cceeeeecccC
Confidence 762 32 44555555443
No 199
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=66.44 E-value=19 Score=35.30 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=30.6
Q ss_pred EEeeeeeecCCCCCeeeeEEEEecCCC---CcEEEEEEEecC
Q 007000 100 VIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDND 138 (622)
Q Consensus 100 ~~~kT~vi~~t~nPvWNE~f~~~v~~~---~~~L~l~V~D~d 138 (622)
..+.|.|...+.+|.|+|++.+.++.. ...|.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 345888988899999999998876543 367889998865
No 200
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=66.35 E-value=8.2 Score=35.70 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=52.8
Q ss_pred ceEEEEEEeecccc-cccc---ccCCCCCCCccCCCCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HH
Q 007000 179 AVLSLSIQYTPVEN-MSLY---YRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQ 253 (622)
Q Consensus 179 G~I~L~l~f~p~~~-l~~~---~~g~~~~~~~~~~~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~ 253 (622)
|+|.++++|.|... +... .+++.. .+. .....|++ ++.|+.++....++++.++..+-+|..||.+ |.
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~-~~~---~g~~DpyV---kv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~ 74 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVW-DNG---KTTADPFV---KVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS 74 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCC-ccC---CCCCCeEE---EEEEEeCCccccccCCccccCCCCCeeceeEEEE
Confidence 57788888876542 2111 111111 111 12336776 8999988887677889999999999999886 54
Q ss_pred HHHHHHHhcccEEEEEEEe
Q 007000 254 DVYDAINQARRLIYITGWS 272 (622)
Q Consensus 254 ~l~~aI~~Ar~~I~I~~y~ 272 (622)
+.. -+-.+..+.|..|.
T Consensus 75 -v~~-~~l~~~~l~~~V~~ 91 (136)
T cd08406 75 -VPA-IVLQDLSLRVTVAE 91 (136)
T ss_pred -CCH-HHhCCcEEEEEEEe
Confidence 322 23345677777773
No 201
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=64.70 E-value=7.5 Score=36.12 Aligned_cols=87 Identities=15% Similarity=-0.038 Sum_probs=53.7
Q ss_pred ceEEEEEEeeccccc-ccc---ccCCCCCCCccCCCCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HH
Q 007000 179 AVLSLSIQYTPVENM-SLY---YRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQ 253 (622)
Q Consensus 179 G~I~L~l~f~p~~~l-~~~---~~g~~~~~~~~~~~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~ 253 (622)
|+|.+++.|.|.... ... .+++.. .++.. .....|++ +|.|+.++....++++.++..+-+|..||.+ |.
T Consensus 2 Gel~~sL~Y~~~~~~L~V~V~karnL~~-~d~~~-~~~~DpYV---Kv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~ 76 (138)
T cd08407 2 GEVLLSISYLPAANRLLVVVIKAKNLHS-DQLKL-LLGIDVSV---KVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE 76 (138)
T ss_pred CEEEEEEEEeCCCCeEEEEEEEecCCCc-cccCC-CCCCCeEE---EEEEEcCCcccceeccceeeCCCCCccccEEEEE
Confidence 688888888876542 111 111111 11100 01246776 8999988877778899999999999999987 65
Q ss_pred HHHHHHHhcccEEEEEEEe
Q 007000 254 DVYDAINQARRLIYITGWS 272 (622)
Q Consensus 254 ~l~~aI~~Ar~~I~I~~y~ 272 (622)
.=.+ +-...++.|+.|.
T Consensus 77 v~~~--~L~~~~L~~~V~d 93 (138)
T cd08407 77 LPSE--LLAASSVELEVLN 93 (138)
T ss_pred CCHH--HhCccEEEEEEEe
Confidence 2222 2234567777663
No 202
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=55.33 E-value=31 Score=31.43 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=46.5
Q ss_pred ceEEEEEEeecccc-ccccccCCCCCCCccCCC---CCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HH
Q 007000 179 AVLSLSIQYTPVEN-MSLYYRGVGSGPDYIGVP---GTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQ 253 (622)
Q Consensus 179 G~I~L~l~f~p~~~-l~~~~~g~~~~~~~~~~~---~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~ 253 (622)
|+|.+.++|.+... +....-.+ .+..... ....|++ ++.++++.......++.++..+-+|..||.+ |+
T Consensus 2 G~i~~sl~Y~~~~~~L~V~V~~a---~nL~~~d~~~g~~dpYV---kv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~ 75 (128)
T cd08392 2 GEIEFALHYNFRTSCLEITIKAC---RNLAYGDEKKKKCHPYV---KVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV 75 (128)
T ss_pred cEEEEEEEEeCCCCEEEEEEEec---CCCCccCCCCCCCCeEE---EEEEEeCCcccceeecccccCCCCCccceEEEEE
Confidence 57777777776442 22111111 2221111 2336676 7888876544445678888888899888875 54
Q ss_pred HHHHHHHhcccEEEEEEE
Q 007000 254 DVYDAINQARRLIYITGW 271 (622)
Q Consensus 254 ~l~~aI~~Ar~~I~I~~y 271 (622)
+.. =+-....+.+..|
T Consensus 76 -v~~-~~l~~~~L~v~V~ 91 (128)
T cd08392 76 -VEA-DLLSSRQLQVSVW 91 (128)
T ss_pred -cCH-HHhCCcEEEEEEE
Confidence 211 1112356666666
No 203
>PF13918 PLDc_3: PLD-like domain
Probab=45.65 E-value=69 Score=31.16 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred eeeeEEeC-hHHHHHHHHHHHHHhhccC
Q 007000 438 DLHCRIDG-PAAYDILTNFEERWLKASK 464 (622)
Q Consensus 438 D~~~ri~G-pav~dl~~~F~~~W~~~~~ 464 (622)
.+++.+.. ..|.||.+.|..-|.....
T Consensus 7 ELGv~~~NscLA~DL~kiF~~Yw~lg~~ 34 (177)
T PF13918_consen 7 ELGVVVYNSCLAQDLQKIFDTYWYLGSN 34 (177)
T ss_pred eeeEEecCcHHHHHHHHHHHHHHhhCCC
Confidence 45555555 4599999999999997654
No 204
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=44.40 E-value=61 Score=29.18 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HHHHHHHHHhcccEEEEEEE
Q 007000 213 YFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQDVYDAINQARRLIYITGW 271 (622)
Q Consensus 213 ~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~~l~~aI~~Ar~~I~I~~y 271 (622)
..|++ ++.++.++......++.++..+-+|..++.+ |+--.+.+ +.+.|.|..|
T Consensus 37 ~DpyV---kv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l--~~~~L~~~V~ 91 (125)
T cd04029 37 SNPYV---KTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL--ETRTLQLSVW 91 (125)
T ss_pred CCcEE---EEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh--CCCEEEEEEE
Confidence 35665 6777766544445677888888888877765 44111222 4456666666
No 205
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=43.26 E-value=1e+02 Score=35.69 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhccc----EEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeEEEEEeCCC
Q 007000 251 CWQDVYDAINQARR----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDP 311 (622)
Q Consensus 251 ~f~~l~~aI~~Ar~----~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~VriLv~D~~ 311 (622)
+++-+-+.|++|+. .|.+- .+.-....+.++|-+|.+.||+|.++| .++
T Consensus 518 il~~I~~Ei~~a~~G~~a~I~~K-----------mNsLvD~~iI~aLY~AS~AGV~IdLIV-RGi 570 (696)
T COG0855 518 ILELIEREIAHAQAGKPARITLK-----------MNSLVDPQIIDALYRASQAGVQIDLIV-RGI 570 (696)
T ss_pred HHHHHHHHHHHHhcCCCceEEEe-----------hhhccCHHHHHHHHHHhhcCCEEEEEE-eee
Confidence 56666667777764 33332 233334789999999999999999998 544
No 206
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=43.26 E-value=62 Score=29.04 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=45.5
Q ss_pred ceEEEEEEeecccc-ccccccCCCCCCCccCCC---CCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HH
Q 007000 179 AVLSLSIQYTPVEN-MSLYYRGVGSGPDYIGVP---GTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQ 253 (622)
Q Consensus 179 G~I~L~l~f~p~~~-l~~~~~g~~~~~~~~~~~---~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~ 253 (622)
|+|++.++|.+... +....-.+ .+..... ....|++ ++.++.+.......++.+...+-+|..+|.+ |+
T Consensus 2 G~i~~sl~y~~~~~~L~V~vi~a---~~L~~~d~~~g~~dpyV---kv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~ 75 (125)
T cd08393 2 GSVQFALDYDPKLRELHVHVIQC---QDLAAADPKKQRSDPYV---KTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK 75 (125)
T ss_pred cEEEEEEEEECCCCEEEEEEEEe---CCCCCcCCCCCCCCcEE---EEEEEcCCCccccccCccCcCCCCCccCceEEEE
Confidence 67788888876532 21111100 1111111 2336666 7888876654445678888888888877765 43
Q ss_pred HHHHHHHhcccEEEEEEE
Q 007000 254 DVYDAINQARRLIYITGW 271 (622)
Q Consensus 254 ~l~~aI~~Ar~~I~I~~y 271 (622)
--.+.+ ....+.+..|
T Consensus 76 v~~~~l--~~~~L~~~V~ 91 (125)
T cd08393 76 VEREEL--PTRVLNLSVW 91 (125)
T ss_pred CCHHHh--CCCEEEEEEE
Confidence 111112 2345666655
No 207
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=42.49 E-value=27 Score=38.33 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=32.9
Q ss_pred eeEeEEEecee-ecCCCeeeecccccCCCCCccccCceEEEEEEeecc
Q 007000 144 IMGAVGIPVEK-LCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (622)
Q Consensus 144 ~IG~~~i~L~~-l~~g~~~~~W~~L~~~~g~~~k~~G~I~L~l~f~p~ 190 (622)
++|.+.|++.. +..+...+.||++.+...+. .+.|.+ +.++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~-~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKS-VGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCC-cCcceE-EEEEeeec
Confidence 48999999999 44667889999998754443 255666 67776654
No 208
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=39.89 E-value=33 Score=31.45 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred ceEEEEEEeecccc-ccccccCCCCCCCccCC-CCCCCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HHHH
Q 007000 179 AVLSLSIQYTPVEN-MSLYYRGVGSGPDYIGV-PGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQDV 255 (622)
Q Consensus 179 G~I~L~l~f~p~~~-l~~~~~g~~~~~~~~~~-~~~~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~~l 255 (622)
|+|++.++|.|... +....-.+ .+..+. .....|++ +|.++.++......++.+...+-+|..+|.| |..-
T Consensus 2 G~i~~sl~y~~~~~~L~V~V~~a---~nL~~~~~~~~d~yV---kv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~ 75 (137)
T cd08409 2 GDIQISLTYNPTLNRLTVVVLRA---RGLRQLDHAHTSVYV---KVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVT 75 (137)
T ss_pred cEEEEEEEECCCCCeEEEEEEEe---cCCCcccCCCCCeEE---EEEEEECCEEeeeeecccEeCCCCCcccceEEEECC
Confidence 56777777776432 22211111 111111 12235665 7777776554446677788888889888886 5422
Q ss_pred HHHHHhcccEEEEEEE
Q 007000 256 YDAINQARRLIYITGW 271 (622)
Q Consensus 256 ~~aI~~Ar~~I~I~~y 271 (622)
.+.+. +..+.|+.|
T Consensus 76 ~~~l~--~~~L~~~V~ 89 (137)
T cd08409 76 SRQLD--TASLSLSVM 89 (137)
T ss_pred HHHhC--ccEEEEEEE
Confidence 23333 356777766
No 209
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=39.27 E-value=49 Score=29.63 Aligned_cols=36 Identities=14% Similarity=-0.045 Sum_probs=25.3
Q ss_pred CCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH
Q 007000 213 YFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC 251 (622)
Q Consensus 213 ~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 251 (622)
..|++ ++.+..+.......++.+...+-+|..+|.+
T Consensus 33 ~DpyV---kv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F 68 (122)
T cd08381 33 PDPYV---KTYLLPDPQKTTKRKTKVVRKTRNPTFNEML 68 (122)
T ss_pred CCCEE---EEEEeeCCccCCceeCCccCCCCCCCcccEE
Confidence 36665 7888776554446678888888888877765
No 210
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=38.39 E-value=34 Score=31.00 Aligned_cols=56 Identities=7% Similarity=-0.204 Sum_probs=40.2
Q ss_pred CCCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH-HHHHHHHHHhcccEEEEEEEeec
Q 007000 213 YFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC-WQDVYDAINQARRLIYITGWSVY 274 (622)
Q Consensus 213 ~~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-f~~l~~aI~~Ar~~I~I~~y~~~ 274 (622)
..|++ ++.|+.+.. ..+.+++++..+-+|+.||.+ |.--.+.| .+.++.++.|.+|
T Consensus 32 sDPYV---Kv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l--~~~tL~~~V~d~D 88 (118)
T cd08677 32 CECYI---SGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEES--LDGTLTLTLRCCD 88 (118)
T ss_pred CCeEE---EEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHh--CCcEEEEEEEeCC
Confidence 47887 788877554 347789999999999999997 76333333 4567777777554
No 211
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=37.54 E-value=19 Score=40.68 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=62.3
Q ss_pred cccchhHHHHHH---------HHHHhcccEEEEEEEeecceeeEEeCC-CCchhHHHHHHhhhcCCCeEEEEEeCCCccc
Q 007000 245 QFNHESCWQDVY---------DAINQARRLIYITGWSVYHTVRLVRDG-SNTLMLGDLLKIKSQEGVRVLILAWDDPTSR 314 (622)
Q Consensus 245 ~~~~~~~f~~l~---------~aI~~Ar~~I~I~~y~~~p~~~i~~~~-~~g~~l~~~L~~aa~rGV~VriLv~D~~gs~ 314 (622)
.|+|+.+|+.|+ ..|++||+.=.=-.|.++|...|.-.. ..-.+|..-|.+.++=|.+-.-|++|+....
T Consensus 57 DyKHR~~WRElY~vEEa~~L~~Li~aAke~~i~F~YAiSPGlDitySspkE~~TLKrKLDQV~qfGC~sfAlLFDDIe~~ 136 (891)
T KOG3698|consen 57 DYKHRSLWRELYNVEEATYLRNLIEAAKENNINFVYAISPGLDITYSSPKEMDTLKRKLDQVRQFGCDSFALLFDDIEVQ 136 (891)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHhcCceEEEEcCCCcccccCCHHHHHHHHHHHHHHHhhCchhhhhhhhhHHHH
Confidence 688888888874 578888864333346677766655432 2347788888888999999988888988652
Q ss_pred ccccccccCccCCChHHHHhhhcCCCeEEE
Q 007000 315 SILGYKTDGIMSTNDEETRRFFKHSSVQVL 344 (622)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~ 344 (622)
|...+.+.+.-|.++.|.+.
T Consensus 137 ----------m~~aDkevF~sFAhAqVsit 156 (891)
T KOG3698|consen 137 ----------MQDADKEVFTSFAHAQVSIT 156 (891)
T ss_pred ----------HhHhHHHHHHHhhhheeeeh
Confidence 23345666777777776554
No 212
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=35.74 E-value=1.2e+02 Score=27.83 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=40.0
Q ss_pred ecCCccccchhHHHHHHHHHHhc-ccEEEEEEEeecceeeEEeCCC------------CchhHHHHHHhhhcCCCeEEEE
Q 007000 240 LDGGVQFNHESCWQDVYDAINQA-RRLIYITGWSVYHTVRLVRDGS------------NTLMLGDLLKIKSQEGVRVLIL 306 (622)
Q Consensus 240 ~~~~~~~~~~~~f~~l~~aI~~A-r~~I~I~~y~~~p~~~i~~~~~------------~g~~l~~~L~~aa~rGV~VriL 306 (622)
+.+|+||-++.+|.++.=+...= ++.+.+..| ++.|+. ...-+.+.+.-.++.||+|++=
T Consensus 6 vvt~ppYg~q~a~~A~~fA~all~~gh~~v~iF-------ly~DgV~~~~~~~~Pa~dEf~l~~~~~~l~~~~gv~v~~C 78 (126)
T COG1553 6 VVTGPPYGTESAFSALRFAEALLEQGHELVRLF-------LYQDGVHNGNKGQKPASDEFNLIQAWLELLTEQGVPVKLC 78 (126)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHcCCeEEEEE-------EeeccccccccCCCCcccccchHHHHHHHHHHcCCcEeee
Confidence 45788999888888774433332 224555655 445542 2356777778888899999876
Q ss_pred E
Q 007000 307 A 307 (622)
Q Consensus 307 v 307 (622)
+
T Consensus 79 ~ 79 (126)
T COG1553 79 V 79 (126)
T ss_pred H
Confidence 4
No 213
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=32.83 E-value=1.9e+02 Score=31.10 Aligned_cols=92 Identities=11% Similarity=0.107 Sum_probs=58.9
Q ss_pred CcEEEEEECCEEEeeeeeecCCC-CCe-eeeEEEEecCCCCcEEEEEEEecCCcCCeeeEeEEEece-eecCC-Ceeeec
Q 007000 89 DPYVTVSICGAVIGRTFVISNSE-SPV-WMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVE-KLCSG-DKIEGA 164 (622)
Q Consensus 89 DPYv~V~l~~~~~~kT~vi~~t~-nPv-WNE~f~~~v~~~~~~L~l~V~D~d~~~dd~IG~~~i~L~-~l~~g-~~~~~W 164 (622)
.-|+.++.|...+ +|..+.-+. +-+ -.|...+.+.--+..|++.|+-....+...||.+.+.+. ++-.+ =....|
T Consensus 75 hiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkW 153 (508)
T PTZ00447 75 HIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEW 153 (508)
T ss_pred eEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccce
Confidence 5788899888777 664444332 332 222344445444578899999888878899999999984 34433 346789
Q ss_pred ccccCCCCCccccCceEEEEE
Q 007000 165 FPILNSSRKPCKAGAVLSLSI 185 (622)
Q Consensus 165 ~~L~~~~g~~~k~~G~I~L~l 185 (622)
|.+. .+|+. .+.+.|+.
T Consensus 154 y~c~-kDGq~---~cRIqLSF 170 (508)
T PTZ00447 154 FVCF-KDGQE---ICKVQMSF 170 (508)
T ss_pred EEEe-cCCce---eeeEEEEe
Confidence 9994 56653 23444443
No 214
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=32.47 E-value=11 Score=43.09 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=38.0
Q ss_pred CCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEecCCCC--cEEEEEEEecCCcC
Q 007000 86 ITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSA--AEVHFVVKDNDFVG 141 (622)
Q Consensus 86 g~~DPYv~V~l~~~~~~kT~vi~~t~nPvWNE~f~~~v~~~~--~~L~l~V~D~d~~~ 141 (622)
-..+|++.+.++++.. ||+.-..+.+|+|||. .+...+.. ..|...|.+++.+.
T Consensus 303 f~~~~~~itsf~~~~f-rt~~~~~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~ 358 (975)
T KOG2419|consen 303 FKDKWLAITSFGEQTF-RTEISDDTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELD 358 (975)
T ss_pred cCCCchheeecchhhh-hhhhhccccccccccc-ccccccchhhHHHhhhcccccccc
Confidence 3478999999999988 9999999999999996 33333221 33444555554443
No 215
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=30.07 E-value=1.1e+02 Score=36.80 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=46.4
Q ss_pred ccCCCcccC-cceeEeece-EEEEEEEEeecCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE----C
Q 007000 24 AVPFETHQG-SLKVLLLHG-NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI----C 97 (622)
Q Consensus 24 ~~~~~~~~~-~~~~~~~~g-~L~v~V~~A~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DPYv~V~l----~ 97 (622)
+.|.+.+.- |+..||-.+ .|+|++.++...--. -+.|-+|.|+. |
T Consensus 324 ~~~~~~k~t~svs~LWd~~~~frI~l~~is~~n~~-----------------------------~t~~~kV~V~~~lyhG 374 (1076)
T KOG0904|consen 324 PLPIPGKKTSSVSTLWDLDRPFRIKLVGISKVNLP-----------------------------ETVDLKVFVEAGLYHG 374 (1076)
T ss_pred CCCcCCCCchhHHHHHcCCCceEEEEeeccccCCC-----------------------------cccceEEEEEEEEEEC
Confidence 344444332 344466555 499999887655321 12466666665 3
Q ss_pred CEEEee---eeeecCCCCCeeeeEEE--EecCCC--CcEEEEEEEe
Q 007000 98 GAVIGR---TFVISNSESPVWMQHFN--VPVAHS--AAEVHFVVKD 136 (622)
Q Consensus 98 ~~~~~k---T~vi~~t~nPvWNE~f~--~~v~~~--~~~L~l~V~D 136 (622)
++...+ |.-+..+.+|.|||..+ +.+.+. ...|.|.|+-
T Consensus 375 ~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 375 TEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred CeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 444333 22233378899999654 455543 2566666654
No 216
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=27.34 E-value=1.1e+02 Score=28.79 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=27.3
Q ss_pred CCCcCCCeEEEeecCcCCCCccceeEecCCccccchhH
Q 007000 214 FPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESC 251 (622)
Q Consensus 214 ~~~~~g~~v~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 251 (622)
.|++ ++.|+.++......++.++..+-+|..+|+|
T Consensus 52 DPYV---Kv~Llp~~~~~~k~KT~v~kktlnPvfNE~F 86 (146)
T cd04028 52 APYV---KVYLLEGKKCIAKKKTKIARKTLDPLYQQQL 86 (146)
T ss_pred CCeE---EEEEECCCccccceeceecCCCCCCccCCeE
Confidence 6776 7888877766567888898888888877775
No 217
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=26.26 E-value=1.3e+02 Score=26.30 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhc----ccEEEEEEEeecceeeEEeCCCC--chhHHHHHHhhhcCCCeEEEEEeC
Q 007000 251 CWQDVYDAINQA----RRLIYITGWSVYHTVRLVRDGSN--TLMLGDLLKIKSQEGVRVLILAWD 309 (622)
Q Consensus 251 ~f~~l~~aI~~A----r~~I~I~~y~~~p~~~i~~~~~~--g~~l~~~L~~aa~rGV~VriLv~D 309 (622)
+|.-+++.+++- ...|.+..- + ..+..... -..|.+.|.+++++|.+|.|- |-
T Consensus 26 Fy~Pi~~wl~~Yl~~~~~~i~~~~~-L----~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~-Wy 84 (99)
T PF09345_consen 26 FYQPILDWLEAYLAEPNKPITFNFK-L----SYFNTSSSKALMDIFDLLEDAAQKGGKVTVN-WY 84 (99)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEE-E----EEEecHhHHHHHHHHHHHHHHHhcCCcEEEE-EE
Confidence 677777777763 233443322 1 12233221 267888888999999999887 64
No 218
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=22.55 E-value=3e+02 Score=27.94 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcccEEEEEEEeecceeeEEe-CCCCchhHHHHHHhhhcCCCeEEEEE
Q 007000 252 WQDVYDAINQARRLIYITGWSVYHTVRLVR-DGSNTLMLGDLLKIKSQEGVRVLILA 307 (622)
Q Consensus 252 f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~-~~~~g~~l~~~L~~aa~rGV~VriLv 307 (622)
.+.|.+++++ .+. .|.+-..-++...+. .......+.++|.+|.+.||+|..+-
T Consensus 159 L~eL~~l~~~-~ra-~vlF~vqr~d~~~f~p~~~~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 159 LRELEEILKE-SRA-VVLFVVALPSVRAFSPNREGDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHh-CCE-EEEEEEeCCCCCEEeeCcccCHHHHHHHHHHHHCCCEEEEEE
Confidence 5666666666 332 222222223233333 23345899999999999999987654
No 219
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=21.00 E-value=2.2e+02 Score=29.46 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=46.5
Q ss_pred ccceeEecCCccc------cc----hhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCCchhHHHHHHhhhcCCCeE
Q 007000 234 CLADLKLDGGVQF------NH----ESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRV 303 (622)
Q Consensus 234 ~~~~~~~~~~~~~------~~----~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~g~~l~~~L~~aa~rGV~V 303 (622)
+.|++.+.+|+|= .. |..-+.|-+.|+.+...+.|.-- +.|+....+.+.++-..+..+||+|
T Consensus 200 ~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHH-------llRD~~y~e~l~~l~~~~~~~GV~v 272 (304)
T COG2248 200 KRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHH-------LLRDKNYREFLEELFERAEKAGVEV 272 (304)
T ss_pred cCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeeh-------hhcCCCHHHHHHHHHhhHhhcCcee
Confidence 4677888888864 11 12345566677777777777665 7788766777888888888999987
Q ss_pred EEE
Q 007000 304 LIL 306 (622)
Q Consensus 304 riL 306 (622)
--.
T Consensus 273 ~Ta 275 (304)
T COG2248 273 ATA 275 (304)
T ss_pred eeH
Confidence 654
No 220
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.68 E-value=7.6e+02 Score=26.61 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=55.1
Q ss_pred EecCCccccchhHHHHHHHHHHhcccEEEEEEEeecceeeEEeCCCC----chhHHHHHHhhhcCCCeEEEEEeCCCccc
Q 007000 239 KLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSN----TLMLGDLLKIKSQEGVRVLILAWDDPTSR 314 (622)
Q Consensus 239 ~~~~~~~~~~~~~f~~l~~aI~~Ar~~I~I~~y~~~p~~~i~~~~~~----g~~l~~~L~~aa~rGV~VriLv~D~~gs~ 314 (622)
..+..+.|..+++++++.+.++..++.|.|++- ++++=.. ...|.++++. -|++|++|-|...+.
T Consensus 229 l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyv-------LI~GvNDs~eda~~L~~ll~~---l~~kVnLIPyN~~~~- 297 (342)
T PRK14465 229 IMDIEEKFPLEELLQAAKDFTRELKRRITFEYV-------MIPGVNMGRENANKLVKIARS---LDCKINVIPLNTEFF- 297 (342)
T ss_pred EeeccccCCHHHHHHHHHHHHHHcCCEEEEEEE-------EECCccCCHHHHHHHHHHHhh---CCCcEEEEccCCCCC-
Confidence 334344566567788888888888899998876 4432111 2455555543 379999998776432
Q ss_pred ccccccccCccCCChHHHHhhhcCCCeEEEec
Q 007000 315 SILGYKTDGIMSTNDEETRRFFKHSSVQVLLC 346 (622)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~ 346 (622)
.+...+. .....+.+.|+..|+.+...
T Consensus 298 ~~~~ps~-----e~i~~F~~~L~~~Gi~v~~R 324 (342)
T PRK14465 298 GWRRPTD-----DEVAEFIMLLEPAGVPILNR 324 (342)
T ss_pred CCCCCCH-----HHHHHHHHHHHHCCCeEEEe
Confidence 2211111 11234566677888887763
Done!