Your job contains 1 sequence.
>007001
MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET
IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP
LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKV
RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED
TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF
LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT
VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRV
ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQ
VDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWI
DRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMGEWGVVDRALLGGM
LVSFLIILALLIHVGFRTLSTK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007001
(622 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2030342 - symbol:AT1G72090 species:3702 "Arabi... 1988 5.1e-212 2
UNIPROTKB|Q291H5 - symbol:GA19679 "Threonylcarbamoyladeno... 1249 3.3e-127 1
FB|FBgn0034214 - symbol:CG6550 species:7227 "Drosophila m... 1235 9.9e-126 1
UNIPROTKB|E1BRH0 - symbol:CDKAL1 "Uncharacterized protein... 1234 1.3e-125 1
UNIPROTKB|F1MAW5 - symbol:CDKAL1 "Uncharacterized protein... 1214 2.4e-125 2
UNIPROTKB|Q5VV42 - symbol:CDKAL1 "Threonylcarbamoyladenos... 1222 2.4e-124 1
UNIPROTKB|E2RAI1 - symbol:CDKAL1 "CDK5 regulatory subunit... 1214 1.7e-123 1
UNIPROTKB|F1RUG0 - symbol:CDKAL1 "Uncharacterized protein... 1213 2.1e-123 1
MGI|MGI:1921765 - symbol:Cdkal1 "CDK5 regulatory subunit ... 1208 7.2e-123 1
ZFIN|ZDB-GENE-040426-1443 - symbol:cdkal1 "CDK5 regulator... 1188 9.5e-121 1
WB|WBGene00022363 - symbol:Y92H12BL.1 species:6239 "Caeno... 929 2.7e-93 1
UNIPROTKB|F1LV76 - symbol:F1LV76 "Uncharacterized protein... 594 8.4e-58 1
UNIPROTKB|Q81LS6 - symbol:BAS4209 "Uncharacterized protei... 478 1.6e-45 1
TIGR_CMR|BA_4535 - symbol:BA_4535 "conserved hypothetical... 478 1.6e-45 1
UNIPROTKB|P54462 - symbol:mtaB "Threonylcarbamoyladenosin... 473 5.6e-45 1
TIGR_CMR|CHY_0419 - symbol:CHY_0419 "MiaB-like tRNA modif... 473 5.6e-45 1
UNIPROTKB|O31778 - symbol:miaB "(Dimethylallyl)adenosine ... 470 1.2e-44 1
UNIPROTKB|Q81WR0 - symbol:miaB "(Dimethylallyl)adenosine ... 465 3.9e-44 1
TIGR_CMR|BA_3908 - symbol:BA_3908 "conserved hypothetical... 465 3.9e-44 1
TIGR_CMR|CHY_1398 - symbol:CHY_1398 "tRNA-i(6)A37 thiotra... 462 8.1e-44 1
UNIPROTKB|Q74A23 - symbol:mtaB "tRNA (2-methylthio-N6-thr... 442 1.1e-41 1
TIGR_CMR|GSU_2568 - symbol:GSU_2568 "MiaB-like tRNA modif... 442 1.1e-41 1
UNIPROTKB|Q74B44 - symbol:miaB "(Dimethylallyl)adenosine ... 424 8.7e-40 1
TIGR_CMR|GSU_2198 - symbol:GSU_2198 "tRNA-i(6)A37 modific... 424 8.7e-40 1
UNIPROTKB|Q747R0 - symbol:rimO "Ribosomal protein S12 met... 421 1.8e-39 1
TIGR_CMR|GSU_3205 - symbol:GSU_3205 "MiaB-like tRNA modif... 421 1.8e-39 1
TIGR_CMR|SPO_A0002 - symbol:SPO_A0002 "tRNA-i(6)A37 thiot... 405 1.2e-37 1
UNIPROTKB|P0AEI1 - symbol:miaB "isopentenyl-adenosine A37... 398 8.1e-37 1
UNIPROTKB|Q9KTE0 - symbol:miaB "(Dimethylallyl)adenosine ... 397 1.1e-36 1
TIGR_CMR|VC_0962 - symbol:VC_0962 "conserved hypothetical... 397 1.1e-36 1
TIGR_CMR|CJE_0508 - symbol:CJE_0508 "tRNA-i(6)A37 thiotra... 395 1.8e-36 1
UNIPROTKB|Q607P8 - symbol:MCA1711 "Putative uncharacteriz... 387 1.5e-35 1
TIGR_CMR|CHY_1164 - symbol:CHY_1164 "MiaB-like tRNA modif... 385 2.6e-35 1
UNIPROTKB|Q83DX3 - symbol:miaB "(Dimethylallyl)adenosine ... 381 7.3e-35 1
TIGR_CMR|CBU_0569 - symbol:CBU_0569 "conserved hypothetic... 381 7.3e-35 1
TIGR_CMR|SO_1181 - symbol:SO_1181 "tRNA-i(6)A37 modificat... 378 1.6e-34 1
TIGR_CMR|APH_0880 - symbol:APH_0880 "tRNA-i(6)A37 thiotra... 373 5.9e-34 1
TIGR_CMR|DET_0962 - symbol:DET_0962 "tRNA modification en... 362 1.0e-32 1
UNIPROTKB|Q608N1 - symbol:miaB "(Dimethylallyl)adenosine ... 354 7.8e-32 1
TIGR_CMR|DET_1385 - symbol:DET_1385 "tRNA-i(6)A37 thiotra... 352 1.3e-31 1
TIGR_CMR|ECH_0837 - symbol:ECH_0837 "tRNA-i(6)A37 modific... 329 4.5e-29 1
TIGR_CMR|NSE_0832 - symbol:NSE_0832 "tRNA-i(6)A37 modific... 327 2.0e-27 1
TIGR_CMR|CPS_3572 - symbol:CPS_3572 "tRNA-i(6)A37 thiotra... 327 2.7e-27 1
FB|FBgn0037816 - symbol:CG6345 species:7227 "Drosophila m... 240 1.3e-25 3
UNIPROTKB|Q60CM4 - symbol:rimO "Ribosomal protein S12 met... 305 4.4e-25 1
UNIPROTKB|F1NZV3 - symbol:CDK5RAP1 "Uncharacterized prote... 217 8.4e-25 3
ZFIN|ZDB-GENE-070424-90 - symbol:zgc:162738 "zgc:162738" ... 217 8.3e-24 3
TIGR_CMR|CJE_1627 - symbol:CJE_1627 "MiaB-like tRNA modif... 289 5.0e-23 1
UNIPROTKB|F1S500 - symbol:CDK5RAP1 "Uncharacterized prote... 196 1.7e-22 3
UNIPROTKB|Q2GHP3 - symbol:ECH_0217 "tRNA modification enz... 282 1.8e-22 1
TIGR_CMR|ECH_0217 - symbol:ECH_0217 "tRNA modification en... 282 1.8e-22 1
UNIPROTKB|E2QYD7 - symbol:CDK5RAP1 "Uncharacterized prote... 198 2.5e-22 3
TAIR|locus:2115410 - symbol:AT4G36390 species:3702 "Arabi... 177 2.5e-22 3
TIGR_CMR|NSE_0785 - symbol:NSE_0785 "tRNA modification en... 280 5.0e-22 1
UNIPROTKB|Q08DN3 - symbol:CDK5RAP1 "CDK5 regulatory subun... 188 9.0e-22 4
MGI|MGI:1914221 - symbol:Cdk5rap1 "CDK5 regulatory subuni... 195 9.2e-22 3
RGD|708387 - symbol:Cdk5rap1 "CDK5 regulatory subunit ass... 191 1.0e-21 3
UNIPROTKB|Q48FA7 - symbol:rimO "Ribosomal protein S12 met... 278 1.2e-21 1
UNIPROTKB|Q8EA37 - symbol:rimO "Ribosomal protein S12 met... 279 1.3e-21 1
TIGR_CMR|SO_4072 - symbol:SO_4072 "MiaB-like putative RNA... 279 1.3e-21 1
TIGR_CMR|CJE_1086 - symbol:CJE_1086 "MiaB-like tRNA modif... 275 1.5e-21 1
UNIPROTKB|Q9KNW0 - symbol:rimO "Ribosomal protein S12 met... 278 1.6e-21 1
TIGR_CMR|VC_2620 - symbol:VC_2620 "conserved hypothetical... 278 1.6e-21 1
UNIPROTKB|P0AEI4 - symbol:rimO "ribosomal protein S12 D88... 273 4.1e-21 1
UNIPROTKB|Q87Y01 - symbol:rimO "Ribosomal protein S12 met... 273 4.2e-21 1
WB|WBGene00017776 - symbol:F25B5.5 species:6239 "Caenorha... 170 5.1e-20 3
UNIPROTKB|Q09316 - symbol:F25B5.5 "CDK5RAP1-like protein"... 170 5.1e-20 3
DICTYBASE|DDB_G0287079 - symbol:DDB_G0287079 "CDK5 regula... 207 2.0e-18 2
UNIPROTKB|Q96SZ6 - symbol:CDK5RAP1 "CDK5 regulatory subun... 192 5.5e-18 3
TIGR_CMR|SPO_0277 - symbol:SPO_0277 "MiaB-like tRNA modif... 229 3.6e-16 1
TIGR_CMR|SPO_0944 - symbol:SPO_0944 "RNA modification enz... 229 5.3e-16 1
UNIPROTKB|E2RIW1 - symbol:CDK5RAP1 "Uncharacterized prote... 160 2.8e-13 2
RGD|1310246 - symbol:Cdkal1 "CDK5 regulatory subunit asso... 148 1.8e-09 1
UNIPROTKB|Q675N4 - symbol:CDK5RAP1 "CDK5 regulatory subun... 89 1.2e-08 3
UNIPROTKB|H0Y721 - symbol:CDK5RAP1 "CDK5 regulatory subun... 143 3.9e-07 1
UNIPROTKB|Q74FM0 - symbol:yhcC-2 "Radical SAM domain iron... 130 2.2e-05 1
TIGR_CMR|GSU_0586 - symbol:GSU_0586 "radical SAM protein,... 130 2.2e-05 1
>TAIR|locus:2030342 [details] [associations]
symbol:AT1G72090 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005783
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016020 GO:GO:0016740
GO:GO:0051539 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:DVPAFTD EMBL:AC069273 EMBL:AF367274
EMBL:BT002712 IPI:IPI00526826 PIR:B96744 RefSeq:NP_565035.1
UniGene:At.17477 ProteinModelPortal:Q9C7H2 SMR:Q9C7H2 PaxDb:Q9C7H2
PRIDE:Q9C7H2 ProMEX:Q9C7H2 EnsemblPlants:AT1G72090.1 GeneID:843540
KEGG:ath:AT1G72090 TAIR:At1g72090 InParanoid:Q9C7H2
PhylomeDB:Q9C7H2 ProtClustDB:CLSN2689155 Genevestigator:Q9C7H2
Uniprot:Q9C7H2
Length = 601
Score = 1988 (704.9 bits), Expect = 5.1e-212, Sum P(2) = 5.1e-212
Identities = 394/501 (78%), Positives = 430/501 (85%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
MEDIEDLL FRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPPG-FRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSA 106
KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+ EEAD+WLINT QSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
FEAF PY GME R ERIWITE+A DGIHLVGHTKGYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMECREERIWITEVATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 467 RWSVFGEVIKILNQVDDKIAS 487
RWSVFGEVI+ + + + S
Sbjct: 479 RWSVFGEVIETFSSANRETKS 499
Score = 84 (34.6 bits), Expect = 5.1e-212, Sum P(2) = 5.1e-212
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 576 KKKQEWM--GGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 619
K+ QE + G ++ WG +D+AL+ G+ VS + IL LLI + R L
Sbjct: 554 KEVQEVVVPGSSVANWGFIDKALVCGVFVSSVTILVLLISIACRVL 599
>UNIPROTKB|Q291H5 [details] [associations]
symbol:GA19679 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:46245 "Drosophila pseudoobscura
pseudoobscura" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 EMBL:CM000071
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
OMA:TLKGHSV OrthoDB:EOG4W3R39 Pfam:PF01938 RefSeq:XP_001360562.1
ProteinModelPortal:Q291H5 GeneID:4803921 KEGG:dpo:Dpse_GA19679
FlyBase:FBgn0079675 InParanoid:Q291H5 Uniprot:Q291H5
Length = 553
Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
Identities = 244/435 (56%), Positives = 316/435 (72%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+ + DT
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 111 IAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ +S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPEH--CMLRVGMTNPPY 304
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F ++ PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHV 484
Query: 461 KITSVGRWSVFGEVI 475
+ITSV ++S+ GE++
Sbjct: 485 RITSVSKFSMVGEIL 499
>FB|FBgn0034214 [details] [associations]
symbol:CG6550 species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE013599 GO:GO:0016021 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089
EMBL:AY051634 RefSeq:NP_611207.1 UniGene:Dm.4535
ProteinModelPortal:Q7K4W1 SMR:Q7K4W1 STRING:Q7K4W1 PaxDb:Q7K4W1
PRIDE:Q7K4W1 EnsemblMetazoa:FBtr0086961 GeneID:36954
KEGG:dme:Dmel_CG6550 UCSC:CG6550-RA FlyBase:FBgn0034214
InParanoid:Q7K4W1 OMA:TLKGHSV OrthoDB:EOG4W3R39 PhylomeDB:Q7K4W1
GenomeRNAi:36954 NextBio:801207 Bgee:Q7K4W1 Pfam:PF01938
Uniprot:Q7K4W1
Length = 552
Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
Identities = 242/436 (55%), Positives = 313/436 (71%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+ + DT
Sbjct: 67 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 125
Query: 111 IAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ +S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH V+LL
Sbjct: 126 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLL 185
Query: 168 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
KK L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 186 QNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 245
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 246 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEH--CMLRVGMTNPP 303
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 304 YILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 363
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+PRPGTPAA+M ++P+ +VKKR
Sbjct: 364 TIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMDRIPANLVKKR 423
Query: 400 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
++ LT +F ++ PY G + + +TE++ D +H VGH K Y QVL+P N+LGT
Sbjct: 424 TKRLTDLFYSYEPYADRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVH 483
Query: 460 VKITSVGRWSVFGEVI 475
V+ITS ++S+ GE++
Sbjct: 484 VRITSASKFSMVGEIL 499
>UNIPROTKB|E1BRH0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV
Pfam:PF01938 EMBL:AADN02027453 EMBL:AADN02027454 EMBL:AADN02027455
EMBL:AADN02027456 EMBL:AADN02027457 EMBL:AADN02027458
EMBL:AADN02027459 EMBL:AADN02027460 EMBL:AADN02027461
EMBL:AADN02027462 EMBL:AADN02027463 EMBL:AADN02027464
EMBL:AADN02027465 EMBL:AADN02027466 EMBL:AADN02027467
EMBL:AADN02027468 EMBL:AADN02027469 EMBL:AADN02027470
EMBL:AADN02027471 IPI:IPI00574581 ProteinModelPortal:E1BRH0
Ensembl:ENSGALT00000020688 ArrayExpress:E1BRH0 Uniprot:E1BRH0
Length = 568
Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
Identities = 243/435 (55%), Positives = 316/435 (72%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+ A D
Sbjct: 58 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 111 ---IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 177
Query: 168 HRKK-----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 178 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 237
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+
Sbjct: 238 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPY 295
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+
Sbjct: 296 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGIT 355
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+
Sbjct: 356 IATDIICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRT 415
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ +F ++ PY G +R+ +TE + D + V H Y QVLVP ++G V
Sbjct: 416 KDLSQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPALMGKMVEV 475
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 476 NIYEAGKHFMKGQPV 490
>UNIPROTKB|F1MAW5 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:DAAA02055585
EMBL:DAAA02055586 EMBL:DAAA02055587 EMBL:DAAA02055588
IPI:IPI00826239 RefSeq:NP_001179620.1 UniGene:Bt.68904
ProteinModelPortal:F1MAW5 Ensembl:ENSBTAT00000017811 GeneID:530159
KEGG:bta:530159 NextBio:20875192 Uniprot:F1MAW5
Length = 578
Score = 1214 (432.4 bits), Expect = 2.4e-125, Sum P(2) = 2.4e-125
Identities = 246/489 (50%), Positives = 334/489 (68%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+ DIED++ F + V PK + + + + S S IPG +
Sbjct: 10 LNDIEDIVSQEDSKPQDRHF----SRKHVVPKVRRRNTQKYLQEENSPPSDST-IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ A D I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK-- 171
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 172 ---LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+ +
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSRI 422
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G+ +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYESG 482
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 483 KHFMKGQPV 491
Score = 38 (18.4 bits), Expect = 2.4e-125, Sum P(2) = 2.4e-125
Identities = 19/71 (26%), Positives = 27/71 (38%)
Query: 427 EIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKI 485
+I G H + G +V PS L + +T R + LN V
Sbjct: 477 DIYESGKHFMKGQPVSDAKVYTPSISKPLARGEVSGLTEEFR----NRLGNHLNSVPHTS 532
Query: 486 ASNRRISSQVR 496
A+NRR S+ R
Sbjct: 533 AANRRESASSR 543
>UNIPROTKB|Q5VV42 [details] [associations]
symbol:CDKAL1 "Threonylcarbamoyladenosine tRNA
methylthiotransferase" species:9606 "Homo sapiens" [GO:0009451 "RNA
modification" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033 MIM:125853
EMBL:CH471087 eggNOG:COG0621 HOGENOM:HOG000224768 Gene3D:3.80.30.20
InterPro:IPR006466 InterPro:IPR023404 InterPro:IPR002792
TIGRFAMs:TIGR01578 PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712
KO:K15865 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:AK000349 EMBL:AK128546 EMBL:AK291735 EMBL:AL513188
EMBL:AL022717 EMBL:AL033521 EMBL:AL035090 EMBL:AL451080
EMBL:AL512405 EMBL:AL513015 EMBL:AL513549 EMBL:BC064145
EMBL:BC121020 EMBL:BC121021 IPI:IPI00015713 IPI:IPI00443485
IPI:IPI00855838 RefSeq:NP_060244.2 UniGene:Hs.657604
ProteinModelPortal:Q5VV42 SMR:Q5VV42 STRING:Q5VV42
PhosphoSite:Q5VV42 DMDM:74747199 PaxDb:Q5VV42 PeptideAtlas:Q5VV42
PRIDE:Q5VV42 Ensembl:ENST00000274695 Ensembl:ENST00000378610
Ensembl:ENST00000378624 GeneID:54901 KEGG:hsa:54901 UCSC:uc003ndb.1
UCSC:uc003ndd.2 UCSC:uc003nde.2 GeneCards:GC06P020534
HGNC:HGNC:21050 HPA:HPA014374 MIM:611259 neXtProt:NX_Q5VV42
PharmGKB:PA134871999 InParanoid:Q5VV42 OMA:CPDITLR
OrthoDB:EOG4RJG1D PhylomeDB:Q5VV42 ChiTaRS:CDKAL1 GenomeRNAi:54901
NextBio:57928 Bgee:Q5VV42 CleanEx:HS_CDKAL1 Genevestigator:Q5VV42
Uniprot:Q5VV42
Length = 579
Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
Identities = 246/489 (50%), Positives = 334/489 (68%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ F + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQEDSKPQDRHF---VRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ A D I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK-- 171
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 172 ---LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>UNIPROTKB|E2RAI1 [details] [associations]
symbol:CDKAL1 "CDK5 regulatory subunit-associated protein
1-like 1" species:9615 "Canis lupus familiaris" [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:AAEX03017586
EMBL:AAEX03017587 EMBL:AB720723 RefSeq:XP_849433.1
Ensembl:ENSCAFT00000016240 GeneID:488240 KEGG:cfa:488240
Uniprot:E2RAI1
Length = 578
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 241/461 (52%), Positives = 321/461 (69%)
Query: 29 VNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYA 88
V PK K + + + S S IPG + I+M+T+GCSHN SD EYMAGQL+A+GY
Sbjct: 34 VVPKARKRNTQKYLQEENSPPSDST-IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYE 92
Query: 89 LTDNSEEADIWLINT----QSAMDTL---IAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 141
+T+N+ EAD+WL+N+ A D I K + K +V+AGCVPQ +G+S
Sbjct: 93 ITENASEADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYFKGLS 152
Query: 142 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVG 194
I+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ +N G
Sbjct: 153 IIGVQQIDRVVEVVEETIKGHSVRLLGQKKANGKRLGGARLDLPKIRKNPLIEIISVNTG 212
Query: 195 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 254
CL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NLP
Sbjct: 213 CLNACTYCKTKHARGNLASYPIDELVERAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPA 272
Query: 255 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 314
LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD VL
Sbjct: 273 LLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLM 330
Query: 315 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374
M REY ++DF+ VVD L E VPG+ +ATDIICGFPGETD+DF +TV L+++YKFP + I
Sbjct: 331 EMKREYCVADFKRVVDFLKEKVPGITLATDIICGFPGETDQDFQETVKLVEDYKFPSLFI 390
Query: 375 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 434
+QFYPRPGTPAA+M +VP+ V K+R+++L+ VF ++ PY G +++ +TE + D
Sbjct: 391 NQFYPRPGTPAAKMVQVPAQVKKQRTKDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKF 450
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
V H + Y QVLVP +G V I G+ + G+ +
Sbjct: 451 YVAHNRFYEQVLVPKNPTFMGKMIEVDIYESGKHFMKGQPV 491
>UNIPROTKB|F1RUG0 [details] [associations]
symbol:CDKAL1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 KO:K15865 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938 EMBL:CT841541
EMBL:CT842529 EMBL:CT954244 EMBL:CT956009 EMBL:CU326401
RefSeq:XP_003128247.3 UniGene:Ssc.32559 ProteinModelPortal:F1RUG0
Ensembl:ENSSSCT00000001175 GeneID:100512355 KEGG:ssc:100512355
Uniprot:F1RUG0
Length = 578
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 247/491 (50%), Positives = 334/491 (68%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPR--LHDNHLSKTGSLSPKIPGT 58
++DIED++ F V PK + + L D + + S IPG
Sbjct: 10 LDDIEDIVSQEDSKPQDRHFARK----QVVPKVRRRNTQKYLQDENSPPSDST---IPGI 62
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---I 111
+ I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ A D I
Sbjct: 63 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSI 122
Query: 112 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 123 KKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 182
Query: 172 -----LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 183 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAK 242
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 243 QSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEH 300
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATD
Sbjct: 301 LEEMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATD 360
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
IICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+
Sbjct: 361 IICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLS 420
Query: 405 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
VF ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 421 RVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYE 480
Query: 465 VGRWSVFGEVI 475
G+ + G+ +
Sbjct: 481 SGKHFMKGQPV 491
>MGI|MGI:1921765 [details] [associations]
symbol:Cdkal1 "CDK5 regulatory subunit associated protein
1-like 1" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 MGI:MGI:1921765 GO:GO:0016021
GO:GO:0005789 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0008033 eggNOG:COG0621 GeneTree:ENSGT00530000063447
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 CTD:54901 HOVERGEN:HBG097712 KO:K15865
GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:TLKGHSV Pfam:PF01938
OrthoDB:EOG4RJG1D EMBL:AK004490 EMBL:AK041864 EMBL:AK045506
EMBL:AK082629 EMBL:AK169761 EMBL:AL513025 EMBL:AL512647
EMBL:AL589701 EMBL:AL645587 EMBL:BC016073 IPI:IPI00163015
IPI:IPI00515329 IPI:IPI00648337 IPI:IPI00857573 IPI:IPI00857859
RefSeq:NP_653119.1 UniGene:Mm.212227 ProteinModelPortal:Q91WE6
STRING:Q91WE6 PhosphoSite:Q91WE6 PRIDE:Q91WE6 DNASU:68916
Ensembl:ENSMUST00000006353 Ensembl:ENSMUST00000091674
Ensembl:ENSMUST00000137225 Ensembl:ENSMUST00000140278 GeneID:68916
KEGG:mmu:68916 UCSC:uc007pyn.1 UCSC:uc007pyo.1 UCSC:uc007pyp.1
InParanoid:Q91WE6 NextBio:328171 Bgee:Q91WE6 Genevestigator:Q91WE6
Uniprot:Q91WE6
Length = 578
Score = 1208 (430.3 bits), Expect = 7.2e-123, P = 7.2e-123
Identities = 246/489 (50%), Positives = 334/489 (68%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDST-IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ A D I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK-- 171
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 172 ---LPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 482
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 483 KHFLKGQPV 491
>ZFIN|ZDB-GENE-040426-1443 [details] [associations]
symbol:cdkal1 "CDK5 regulatory subunit associated
protein 1-like 1" species:7955 "Danio rerio" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0043412 "macromolecule modification" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 ZFIN:ZDB-GENE-040426-1443 GO:GO:0016021 GO:GO:0005789
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0008033
HOGENOM:HOG000224768 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 EMBL:BC057248 IPI:IPI00510915 RefSeq:NP_956921.1
UniGene:Dr.118384 ProteinModelPortal:Q6PG34 PRIDE:Q6PG34
GeneID:393600 KEGG:dre:393600 CTD:54901 HOVERGEN:HBG097712
InParanoid:Q6PG34 KO:K15865 NextBio:20814618 ArrayExpress:Q6PG34
GO:GO:0009451 TIGRFAMs:TIGR00089 Uniprot:Q6PG34
Length = 547
Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
Identities = 237/456 (51%), Positives = 317/456 (69%)
Query: 38 PRLHDNHLSKTGS---LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
PR H +TG IPG + +++KT+GCSHN SD EYMAGQL+ GY +T++S
Sbjct: 36 PRAR-KHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSS 94
Query: 95 EADIWLINT----QSAMD---TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 147
+AD+WL+N+ A D I K + K +V+AGCVPQ + ++ +SI+GVQQ
Sbjct: 95 DADLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQ 154
Query: 148 IDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACT 200
IDRVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN GCL ACT
Sbjct: 155 IDRVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACT 214
Query: 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260
YCKTKHARG L SY VE LV RVR +GV E+WL+SEDTGAYGRDIG +LP LL +V
Sbjct: 215 YCKTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLV 274
Query: 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 320
E+P +G+ MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL M REY
Sbjct: 275 EEIP-EGA-MLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREY 332
Query: 321 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380
+DF +VD L E VPG+ IATDIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPR
Sbjct: 333 CCADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPR 392
Query: 381 PGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTK 440
PGTPAA M+++P+ V K+R++EL+++F ++ PY G +++ +TE + D + V H K
Sbjct: 393 PGTPAALMQQLPAHVKKQRTKELSALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNK 452
Query: 441 GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
Y QVLVP LG V++ G+ + G ++
Sbjct: 453 FYEQVLVPKRPEYLGKMVQVEVYECGKHYMKGRPLE 488
>WB|WBGene00022363 [details] [associations]
symbol:Y92H12BL.1 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR020612 Pfam:PF04055 PROSITE:PS01278
SMART:SM00729 GO:GO:0016021 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0008033 EMBL:FO081632 RefSeq:NP_740783.2
ProteinModelPortal:Q8MXQ7 SMR:Q8MXQ7 STRING:Q8MXQ7 PaxDb:Q8MXQ7
EnsemblMetazoa:Y92H12BL.1 GeneID:190786 KEGG:cel:CELE_Y92H12BL.1
UCSC:Y92H12BL.1 CTD:190786 WormBase:Y92H12BL.1 eggNOG:COG0621
GeneTree:ENSGT00530000063447 HOGENOM:HOG000224768 InParanoid:Q8MXQ7
OMA:ILVPLEY NextBio:946956 Gene3D:3.80.30.20 InterPro:IPR006466
InterPro:IPR023404 InterPro:IPR002792 TIGRFAMs:TIGR01578
PROSITE:PS50926 Uniprot:Q8MXQ7
Length = 425
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 185/358 (51%), Positives = 254/358 (70%)
Query: 123 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 181
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 240
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 241 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 300
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 301 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 361 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 419
+ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T Y G
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298
Query: 420 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 477
+ R+ +TE+AAD +H VGH K Y Q+LVP +G V++T+V ++S+ + I
Sbjct: 299 LHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTKFSMISKPASI 356
>UNIPROTKB|F1LV76 [details] [associations]
symbol:F1LV76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055 SMART:SM00729
GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
IPI:IPI00190732 ProteinModelPortal:F1LV76
Ensembl:ENSRNOT00000024854 Uniprot:F1LV76
Length = 164
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 111/166 (66%), Positives = 140/166 (84%)
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 1 GVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMA 58
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 59 KILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 118
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
PGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V
Sbjct: 119 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHV 164
>UNIPROTKB|Q81LS6 [details] [associations]
symbol:BAS4209 "Uncharacterized protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 139/431 (32%), Positives = 217/431 (50%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY T+ ++AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
+ P + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTP-YLGM-EGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + Y EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVG 466
VKI G
Sbjct: 417 KLVKVKIMKAG 427
>TIGR_CMR|BA_4535 [details] [associations]
symbol:BA_4535 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 RefSeq:NP_846758.1 RefSeq:YP_021181.1
RefSeq:YP_030457.1 ProteinModelPortal:Q81LS6 DNASU:1088268
EnsemblBacteria:EBBACT00000008940 EnsemblBacteria:EBBACT00000017843
EnsemblBacteria:EBBACT00000022379 GeneID:1088268 GeneID:2819009
GeneID:2848800 KEGG:ban:BA_4535 KEGG:bar:GBAA_4535 KEGG:bat:BAS4209
BioCyc:BANT260799:GJAJ-4265-MONOMER
BioCyc:BANT261594:GJ7F-4411-MONOMER Uniprot:Q81LS6
Length = 450
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 139/431 (32%), Positives = 217/431 (50%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY T+ ++AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
+ P + V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTP-YLGM-EGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + Y EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVG 466
VKI G
Sbjct: 417 KLVKVKIMKAG 427
>UNIPROTKB|P54462 [details] [associations]
symbol:mtaB "Threonylcarbamoyladenosine tRNA
methylthiotransferase MtaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035598 "N6-threonylcarbomyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:D84432 TIGRFAMs:TIGR01579 EMBL:D83717 PIR:E69952
RefSeq:NP_390421.1 ProteinModelPortal:P54462 SMR:P54462
EnsemblBacteria:EBBACT00000000539 GeneID:937857 KEGG:bsu:BSU25430
PATRIC:18976924 GenoList:BSU25430 HOGENOM:HOG000224765 OMA:DVPAFTD
ProtClustDB:CLSK872997 BioCyc:BSUB:BSU25430-MONOMER GO:GO:0035598
Uniprot:P54462
Length = 451
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 138/459 (30%), Positives = 229/459 (49%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY D + AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ P + V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTP-YLGM-EGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNML 454
L ++ + Y E V I I E A VG+T Y++V+ T +M+
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEI-IPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMI 415
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
G VKI G G+ +++ V+D+I + R+SS
Sbjct: 416 GKIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>TIGR_CMR|CHY_0419 [details] [associations]
symbol:CHY_0419 "MiaB-like tRNA modifying enzyme"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_359280.1 ProteinModelPortal:Q3AF04 STRING:Q3AF04
GeneID:3727815 KEGG:chy:CHY_0419 PATRIC:21273999 OMA:SEFNERS
BioCyc:CHYD246194:GJCN-420-MONOMER Uniprot:Q3AF04
Length = 434
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 138/432 (31%), Positives = 223/432 (51%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA------K 118
T GC NQ ++E + G GY + D S+ ADI++INT + K + K
Sbjct: 8 TLGCKVNQYETEALKGAFLEKGYEIVDFSDYADIYVINTCTVTHLSDRKSRQMIRKAVQK 67
Query: 119 KP-LVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH-EVRLL--HRK 170
P VVA GC Q ++ ++ V++V G +R+VE+VE+ L+ ++ + +
Sbjct: 68 NPRAVVAAVGCYAQVAPEEILKIPEVNLVLGTVHKNRLVELVEKVLRERTKINAVASFEE 127
Query: 171 KLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
L ++P K+ K + I GC C YC +ARG L S +E +V V+ +
Sbjct: 128 LLEFEEMPLKLAPGKARAFVKIQEGCNSYCAYCIIPYARGPLRSRPLEDVVAEVKKLCQS 187
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL--PPDGSTMLRIGMTNPPFILEHLKE 287
G E+ L+ TGAYG++ +LP L + +VAEL P+ LR+ P + E
Sbjct: 188 GFSEIVLTGIHTGAYGQE-KQDLPKLAD-LVAELFKIPE-LKRLRLSSIEPQ---DFTVE 241
Query: 288 IAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
+ +VL + P LH+P+QSG D +L AM R+YT ++ +++T+ E +P + + +D+I
Sbjct: 242 LLDVLANSPKFCRHLHLPLQSGDDDILKAMRRKYTSYEYLRLIETIRERIPDIALTSDVI 301
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 405
GFPGET+E F T NL+K+ F +H+ ++ PR GTPAA+M ++P ++RS L +
Sbjct: 302 VGFPGETEEQFLNTYNLVKKVGFMDIHVFKYSPRAGTPAAKMPGQIPEREKERRSLLLLN 361
Query: 406 VFEA-FTPYLG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
+ E F Y G++ + E +G GH+ Y++V G VKIT
Sbjct: 362 LKEELFKNYASKFLGKILEVIPEEQDTEGFW-EGHSDNYLRVKFSGNNIKRGEIYPVKIT 420
Query: 464 SVGRWSVFGEVI 475
+ V GE++
Sbjct: 421 EMKEGYVSGELV 432
>UNIPROTKB|O31778 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:224308 "Bacillus subtilis
subsp. subtilis str. 168" [GO:0035597 "N6-isopentenyladenosine
methylthiotransferase activity" evidence=IMP] [GO:0035600 "tRNA
methylthiolation" evidence=IMP] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0051539 EMBL:AL009126 GenomeReviews:AL009126_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14327 PIR:D69884 RefSeq:NP_389583.1
ProteinModelPortal:O31778 SMR:O31778
EnsemblBacteria:EBBACT00000002125 GeneID:939451 KEGG:bsu:BSU17010
PATRIC:18975209 GenoList:BSU17010 BioCyc:BSUB:BSU17010-MONOMER
GO:GO:0035597 Uniprot:O31778
Length = 509
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 135/437 (30%), Positives = 221/437 (50%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC--- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 69 YIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGHL 128
Query: 115 KSAKK--P---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
K+ KK P L V GC+ Q +R LK+ V ++ G I R+ E++ E E+
Sbjct: 129 KALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKEM 188
Query: 165 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + K+ ++ LPKVR K + I GC CTYC + RG S E ++
Sbjct: 189 VVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQE 248
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 249 VRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDFD 307
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 308 DRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASLT 365
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R +
Sbjct: 366 TDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERLQ 425
Query: 402 ELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 426 RLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKIV 485
Query: 459 LVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 486 RVKIQQAKTWSLDGEMV 502
>UNIPROTKB|Q81WR0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 132/441 (29%), Positives = 226/441 (51%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC--- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 69 YIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGHL 128
Query: 115 KSAKKP----LV-VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
KS K+ L+ V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 129 KSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKET 188
Query: 165 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + K+ ++ LPKVRR + I GC CTYC + RG S E ++
Sbjct: 189 VVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQE 248
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 249 IRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFD 307
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+HL E+ + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 308 DHLIEVLG--KGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLT 365
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R +
Sbjct: 366 TDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQ 425
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLG 455
L ++ + R + I E+ DG L G+T+ V + +++G
Sbjct: 426 RLNALVNKLA--IEKNDRYKG-QIVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIG 482
Query: 456 TSALVKITSVGRWSVFGEVIK 476
+K+T WS+ GE+++
Sbjct: 483 QLVKIKVTDAKTWSLNGELVE 503
>TIGR_CMR|BA_3908 [details] [associations]
symbol:BA_3908 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:NP_846155.1
RefSeq:YP_020548.1 RefSeq:YP_029874.1 ProteinModelPortal:Q81WR0
DNASU:1087981 EnsemblBacteria:EBBACT00000011059
EnsemblBacteria:EBBACT00000018590 EnsemblBacteria:EBBACT00000019692
GeneID:1087981 GeneID:2814749 GeneID:2848443 KEGG:ban:BA_3908
KEGG:bar:GBAA_3908 KEGG:bat:BAS3621 ProtClustDB:PRK14327
BioCyc:BANT260799:GJAJ-3680-MONOMER
BioCyc:BANT261594:GJ7F-3797-MONOMER Uniprot:Q81WR0
Length = 509
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 132/441 (29%), Positives = 226/441 (51%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC--- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 69 YIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGHL 128
Query: 115 KSAKKP----LV-VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
KS K+ L+ V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 129 KSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKET 188
Query: 165 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + K+ ++ LPKVRR + I GC CTYC + RG S E ++
Sbjct: 189 VVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQE 248
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 249 IRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDFD 307
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+HL E+ + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 308 DHLIEVLG--KGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVLT 365
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R +
Sbjct: 366 TDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERLQ 425
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLG 455
L ++ + R + I E+ DG L G+T+ V + +++G
Sbjct: 426 RLNALVNKLA--IEKNDRYKG-QIVEVLVDGESKNNPEVLAGYTRTNKLVNFVAPKSLIG 482
Query: 456 TSALVKITSVGRWSVFGEVIK 476
+K+T WS+ GE+++
Sbjct: 483 QLVKIKVTDAKTWSLNGELVE 503
>TIGR_CMR|CHY_1398 [details] [associations]
symbol:CHY_1398 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_360230.1
ProteinModelPortal:Q3ACA4 STRING:Q3ACA4 GeneID:3726945
KEGG:chy:CHY_1398 PATRIC:21275927 ProtClustDB:PRK14328
BioCyc:CHYD246194:GJCN-1397-MONOMER TIGRFAMs:TIGR01579
Uniprot:Q3ACA4
Length = 440
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 131/430 (30%), Positives = 218/430 (50%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------I 111
++ Y+ T GC N DSE +AG L + G+ + + AD+ +INT S +T I
Sbjct: 4 KSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVFTKI 63
Query: 112 AKCKSAKK--P-LV--VAGCVPQGSRDLKEL-EGVS----IVGVQQIDRVVEVVEETLKG 161
+ K K+ P LV V GC+PQ + K L E I G + + +++E +
Sbjct: 64 GELKKLKRENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILERVFEK 123
Query: 162 HEVRLLH--RKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVES 218
HE R+L + + ++ V+R V + I GC CTYC + RG S E
Sbjct: 124 HE-RVLEVWQSEGQIVEGIPVKREPGVRAWVTIMYGCNNFCTYCIVPYVRGRERSRKKED 182
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
++ +R ++A+G +EV L ++ +YG+D+ P+ ++A++ DG +R ++
Sbjct: 183 ILQEIRQLVAEGYREVTLLGQNVNSYGKDLK-GKPMFAE-LLADIEKIDGLWRVRFTTSH 240
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + + + E+ R C + LH+PVQ+GS+ +L AM+R YT + +V+ + +P
Sbjct: 241 PRDLTDDVIEVMASSRKICEH--LHLPVQAGSNKILKAMHRGYTREYYLNLVEKIRAKIP 298
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFPGET+EDF QT++L+++ ++ + R GTPAA MK +VP V
Sbjct: 299 KVSFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMKDQVPEEVK 358
Query: 397 KKRSRELTSVFEAFTPYLGM--EGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM 453
+R +EL + + L EG + I + + D L G T+ V+ ++
Sbjct: 359 SRRIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKLVVFNGNEDL 418
Query: 454 LGTSALVKIT 463
+G VKIT
Sbjct: 419 VGKLVKVKIT 428
>UNIPROTKB|Q74A23 [details] [associations]
symbol:mtaB "tRNA (2-methylthio-N6-threonylcarbamyl-A37)
methylthiotransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:NP_953614.1
ProteinModelPortal:Q74A23 GeneID:2686393 KEGG:gsu:GSU2568
PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 133/425 (31%), Positives = 208/425 (48%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAMDT----LI 111
+ + + T GC NQ +S M L G+ L +EADI++INT + D LI
Sbjct: 2 QRVAITTLGCKINQFESAAMTESLGREGFRLVPFEDEADIYVINTCTVTARTDAESRRLI 61
Query: 112 AKC--KSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 166
+ ++ +VV GC Q + D + EL GVS +VG + + ++ + + ++ +
Sbjct: 62 RRAMRRNPAARVVVTGCYAQVAPDAVGELPGVSLVVGNSEKKGIAGLLRDAVPAEKILVS 121
Query: 167 -LHRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ R++ + AL L + L + GC C+YC HARG S ++ +
Sbjct: 122 DISRQRTVEALGLESFAEHTRA-FLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIG 180
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFI 281
T G +EV L+ GAYG D+ +L LL A AE L P LR+G P I
Sbjct: 181 TFAYQGFREVVLTGIHLGAYGADLEPPASLLDLLEAADAEALVP----RLRVGSVEPHEI 236
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L IA + R P + LH+P+QSGSD+VL MNR YT + FR V+ L VP + I
Sbjct: 237 SDGL--IALMARSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERLAAAVPDICI 294
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
D+I GFPGETDE+F T+ L++ +H+ F R GTPAARM +V +V++R+
Sbjct: 295 GCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQVDGKIVRERA 354
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L ++ + + + + G + G ++ Y+ V + + +V
Sbjct: 355 EVLRALSDRKRETFHRRFMGRDLPVLVLNGRGKEVTGLSRNYITVRIEAVTPPPEGEVMV 414
Query: 461 KITSV 465
+IT V
Sbjct: 415 RITGV 419
>TIGR_CMR|GSU_2568 [details] [associations]
symbol:GSU_2568 "MiaB-like tRNA modifying enzyme"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 GO:GO:0009451 TIGRFAMs:TIGR00089
TIGRFAMs:TIGR01579 HOGENOM:HOG000224765 OMA:VITFGCR
RefSeq:NP_953614.1 ProteinModelPortal:Q74A23 GeneID:2686393
KEGG:gsu:GSU2568 PATRIC:22027987 ProtClustDB:CLSK828892
BioCyc:GSUL243231:GH27-2545-MONOMER Uniprot:Q74A23
Length = 434
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 133/425 (31%), Positives = 208/425 (48%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAMDT----LI 111
+ + + T GC NQ +S M L G+ L +EADI++INT + D LI
Sbjct: 2 QRVAITTLGCKINQFESAAMTESLGREGFRLVPFEDEADIYVINTCTVTARTDAESRRLI 61
Query: 112 AKC--KSAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL- 166
+ ++ +VV GC Q + D + EL GVS +VG + + ++ + + ++ +
Sbjct: 62 RRAMRRNPAARVVVTGCYAQVAPDAVGELPGVSLVVGNSEKKGIAGLLRDAVPAEKILVS 121
Query: 167 -LHRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ R++ + AL L + L + GC C+YC HARG S ++ +
Sbjct: 122 DISRQRTVEALGLESFAEHTRA-FLQVQNGCDAFCSYCIVPHARGRSRSVPFRDVLEGIG 180
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFI 281
T G +EV L+ GAYG D+ +L LL A AE L P LR+G P I
Sbjct: 181 TFAYQGFREVVLTGIHLGAYGADLEPPASLLDLLEAADAEALVP----RLRVGSVEPHEI 236
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L IA + R P + LH+P+QSGSD+VL MNR YT + FR V+ L VP + I
Sbjct: 237 SDGL--IALMARSPVICPHLHIPLQSGSDSVLERMNRRYTAAFFRERVERLAAAVPDICI 294
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
D+I GFPGETDE+F T+ L++ +H+ F R GTPAARM +V +V++R+
Sbjct: 295 GCDVIAGFPGETDEEFAATLALLEGLPIAHLHVFPFSRREGTPAARMPGQVDGKIVRERA 354
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L ++ + + + + G + G ++ Y+ V + + +V
Sbjct: 355 EVLRALSDRKRETFHRRFMGRDLPVLVLNGRGKEVTGLSRNYITVRIEAVTPPPEGEVMV 414
Query: 461 KITSV 465
+IT V
Sbjct: 415 RITGV 419
>UNIPROTKB|Q74B44 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 135/439 (30%), Positives = 213/439 (48%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC------ 114
+Y++TFGC N +DSE +A L GY TD+ E AD+ ++NT S K
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66
Query: 115 ----KSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 162
+S KK + V GCV Q G R L+++ + +V G + + E+V +G
Sbjct: 67 FKGVRSRKKGFLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERGERRA 126
Query: 163 EVRLLHRKKLPALDL-PKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
EV + + LDL P+ V + + GC C+YC + RG S ++
Sbjct: 127 EVGFIDNET--RLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDII 184
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPP 279
VR +A+GVKEV L ++ +YG L L +AE+ +G +R ++P
Sbjct: 185 DEVRKSVAEGVKEVTLLGQNVNSYGLKTEGELSFAGLIRRIAEV--EGLERIRFTTSHPK 242
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
I L IA P + +H+P QSGSDAVL+ MNR YT + + V+ L PG+
Sbjct: 243 DISPEL--IACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGI 300
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK- 398
Q D+I GFPGET+EDF T++L++E ++ + + PRP T AA ++ S K+
Sbjct: 301 QFTGDMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSRKEKQS 360
Query: 399 RSRELTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
R L ++ + + G + + + ++ G L G G V + +++GT
Sbjct: 361 RLDRLQTLQQQMKRERNISFVGTRQLVLVEGVSKRGDQLYGRIDGNRIVNFAADQSLIGT 420
Query: 457 SALVKITSVGRWSVFGEVI 475
A V IT + S+ GE++
Sbjct: 421 MAEVTITQDYQNSLLGEIV 439
>TIGR_CMR|GSU_2198 [details] [associations]
symbol:GSU_2198 "tRNA-i(6)A37 modification enzyme MiaB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_953247.1 ProteinModelPortal:Q74B44
GeneID:2685659 KEGG:gsu:GSU2198 PATRIC:22027253
BioCyc:GSUL243231:GH27-2215-MONOMER Uniprot:Q74B44
Length = 446
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 135/439 (30%), Positives = 213/439 (48%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC------ 114
+Y++TFGC N +DSE +A L GY TD+ E AD+ ++NT S K
Sbjct: 7 LYVETFGCQMNVNDSEKIATLLKDEGYLPTDDPERADLVILNTCSVRAKAEQKVYGHLGR 66
Query: 115 ----KSAKKPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 162
+S KK + V GCV Q G R L+++ + +V G + + E+V +G
Sbjct: 67 FKGVRSRKKGFLLGVGGCVAQQEGERLLQKVPWLDLVFGTHNLHLLPEIVRAAERGERRA 126
Query: 163 EVRLLHRKKLPALDL-PKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
EV + + LDL P+ V + + GC C+YC + RG S ++
Sbjct: 127 EVGFIDNET--RLDLFPETGGEGGVTRFVTVMQGCDNFCSYCIVPYVRGREISRRSSDII 184
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPP 279
VR +A+GVKEV L ++ +YG L L +AE+ +G +R ++P
Sbjct: 185 DEVRKSVAEGVKEVTLLGQNVNSYGLKTEGELSFAGLIRRIAEV--EGLERIRFTTSHPK 242
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
I L IA P + +H+P QSGSDAVL+ MNR YT + + V+ L PG+
Sbjct: 243 DISPEL--IACFAEVPKLCGHIHLPAQSGSDAVLARMNRGYTRAGYLEKVEALRAARPGI 300
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK- 398
Q D+I GFPGET+EDF T++L++E ++ + + PRP T AA ++ S K+
Sbjct: 301 QFTGDMIVGFPGETEEDFQATISLMEEVRYADLFSFIYSPRPETAAAGIRDTVSRKEKQS 360
Query: 399 RSRELTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
R L ++ + + G + + + ++ G L G G V + +++GT
Sbjct: 361 RLDRLQTLQQQMKRERNISFVGTRQLVLVEGVSKRGDQLYGRIDGNRIVNFAADQSLIGT 420
Query: 457 SALVKITSVGRWSVFGEVI 475
A V IT + S+ GE++
Sbjct: 421 MAEVTITQDYQNSLLGEIV 439
>UNIPROTKB|Q747R0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 115/366 (31%), Positives = 185/366 (50%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTL 110
E + M + GC N D+E M G+L+ Y +T + EADI ++NT Q ++DT+
Sbjct: 6 EKVSMVSLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESIDTI 65
Query: 111 I----AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEE-TLKGH 162
+ K + L+V GC+PQ ++ +EL V I VG R+ E++EE + +
Sbjct: 66 LDLADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPE 125
Query: 163 EVRLLHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
++R + D R N + L I GC C+YC RG S +ES+
Sbjct: 126 QLRYIGDPNF-VFDESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESV 184
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNP 278
+ R+++A G +E+ L ++D YGRD+ P L ++ EL DG +R+ P
Sbjct: 185 LAEARSLVAGGAREINLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWIRLLYAYP 242
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
I + L I + P V +L +P+Q SD +L MNR T R +V L E +P
Sbjct: 243 DGITDGL--IQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPD 300
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + T +I GFPGET+EDF ++ ++E +F ++ + + GTPAA M +V V +
Sbjct: 301 IALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSERVKR 360
Query: 398 KRSREL 403
+R ++L
Sbjct: 361 ERYKKL 366
Score = 351 (128.6 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 109/393 (27%), Positives = 187/393 (47%)
Query: 104 QSAMDTLI----AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVE 156
Q ++DT++ K + L+V GC+PQ ++ +EL V I VG R+ E++E
Sbjct: 59 QESIDTILDLADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIE 118
Query: 157 E-TLKGHEVRLLHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLG 212
E + + ++R + D R N + L I GC C+YC RG
Sbjct: 119 EKSSRPEQLRYIGDPNF-VFDESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFR 177
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTML 271
S +ES++ R+++A G +E+ L ++D YGRD+ P L ++ EL DG +
Sbjct: 178 SRPLESVLAEARSLVAGGAREINLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWI 235
Query: 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
R+ P I + L I + P V +L +P+Q SD +L MNR T R +V
Sbjct: 236 RLLYAYPDGITDGL--IQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVAR 293
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K 390
L E +P + + T +I GFPGET+EDF ++ ++E +F ++ + + GTPAA M +
Sbjct: 294 LREEIPDIALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQ 353
Query: 391 VPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADG-IHLVGHTKGYV---- 443
V V ++R ++L +F + E++ + + + + L G +
Sbjct: 354 VSERVKRERYKKLMKAQARVSFKRNRRLIDTEEQVIVEGYSEETELLLKGRSSRQAPDID 413
Query: 444 -QVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
QV + + +G ++IT + + GE+I
Sbjct: 414 GQVYITAGNANVGDIVRLRITDSSDYDLIGEII 446
>TIGR_CMR|GSU_3205 [details] [associations]
symbol:GSU_3205 "MiaB-like tRNA modifying enzyme YliG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
RefSeq:NP_954246.1 ProteinModelPortal:Q747R0 GeneID:2688354
KEGG:gsu:GSU3205 PATRIC:22029265 ProtClustDB:CLSK829158
BioCyc:GSUL243231:GH27-3163-MONOMER Uniprot:Q747R0
Length = 447
Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 115/366 (31%), Positives = 185/366 (50%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTL 110
E + M + GC N D+E M G+L+ Y +T + EADI ++NT Q ++DT+
Sbjct: 6 EKVSMVSLGCPKNLVDAEVMLGRLAKDRYEITTDEREADIIIVNTCSFIKEAKQESIDTI 65
Query: 111 I----AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVEE-TLKGH 162
+ K + L+V GC+PQ ++ +EL V I VG R+ E++EE + +
Sbjct: 66 LDLADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIEEKSSRPE 125
Query: 163 EVRLLHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
++R + D R N + L I GC C+YC RG S +ES+
Sbjct: 126 QLRYIGDPNF-VFDESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFRSRPLESV 184
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNP 278
+ R+++A G +E+ L ++D YGRD+ P L ++ EL DG +R+ P
Sbjct: 185 LAEARSLVAGGAREINLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWIRLLYAYP 242
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
I + L I + P V +L +P+Q SD +L MNR T R +V L E +P
Sbjct: 243 DGITDGL--IQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVARLREEIPD 300
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + T +I GFPGET+EDF ++ ++E +F ++ + + GTPAA M +V V +
Sbjct: 301 IALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQVSERVKR 360
Query: 398 KRSREL 403
+R ++L
Sbjct: 361 ERYKKL 366
Score = 351 (128.6 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 109/393 (27%), Positives = 187/393 (47%)
Query: 104 QSAMDTLI----AKCKSAKKPLVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVVE 156
Q ++DT++ K + L+V GC+PQ ++ +EL V I VG R+ E++E
Sbjct: 59 QESIDTILDLADRKQDGRCRLLIVTGCLPQRYQEELARELPEVDIFVGTGDYPRIAEIIE 118
Query: 157 E-TLKGHEVRLLHRKKLPALDLPKVRRNK---FVEILPINVGCLGACTYCKTKHARGHLG 212
E + + ++R + D R N + L I GC C+YC RG
Sbjct: 119 EKSSRPEQLRYIGDPNF-VFDESLTRLNSSPAYTAYLKIAEGCSNCCSYCVIPSLRGAFR 177
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTML 271
S +ES++ R+++A G +E+ L ++D YGRD+ P L ++ EL DG +
Sbjct: 178 SRPLESVLAEARSLVAGGAREINLIAQDITTYGRDLP-GAPSL-ETLIRELAAIDGLAWI 235
Query: 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
R+ P I + L I + P V +L +P+Q SD +L MNR T R +V
Sbjct: 236 RLLYAYPDGITDGL--IQTIKNEPKVCKYLDLPIQHISDPILKRMNRRSTEPQIRELVAR 293
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K 390
L E +P + + T +I GFPGET+EDF ++ ++E +F ++ + + GTPAA M +
Sbjct: 294 LREEIPDIALRTSLIVGFPGETEEDFRTLLHFVEEAQFDRLGVFCYSREEGTPAAEMPDQ 353
Query: 391 VPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADG-IHLVGHTKGYV---- 443
V V ++R ++L +F + E++ + + + + L G +
Sbjct: 354 VSERVKRERYKKLMKAQARVSFKRNRRLIDTEEQVIVEGYSEETELLLKGRSSRQAPDID 413
Query: 444 -QVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
QV + + +G ++IT + + GE+I
Sbjct: 414 GQVYITAGNANVGDIVRLRITDSSDYDLIGEII 446
>TIGR_CMR|SPO_A0002 [details] [associations]
symbol:SPO_A0002 "tRNA-i(6)A37 thiotransferase enzyme
MiaB" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:CP000032 GenomeReviews:CP000032_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:YP_164834.1 ProteinModelPortal:Q5LLM0
GeneID:3196777 KEGG:sil:SPOA0002 PATRIC:23381304 Uniprot:Q5LLM0
Length = 439
Score = 405 (147.6 bits), Expect = 1.2e-37, P = 1.2e-37
Identities = 124/436 (28%), Positives = 205/436 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
+++KT+GC N DSE MA L GY T ++E+AD+ L+NT + A + + ++
Sbjct: 7 LFIKTYGCQMNVYDSERMAEALGGQGYVETQSAEDADMILLNTCHIREKAAEKVYSELGR 66
Query: 115 ----KSAKKPLV--VAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGH--- 162
K+AK L VAGCV Q G ++ V +VG Q R+ E+ +T G
Sbjct: 67 FKGLKAAKPDLKIGVAGCVAQAEGEEIMRRQPLVDLVVGPQSYHRLPELEAKTRAGEKAL 126
Query: 163 EVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ K L PK +R L + GC C +C + RG S + ++
Sbjct: 127 DTDFPEEDKFEKLKGRPKAKRGP-TAFLTVQEGCDKFCAFCVVPYTRGAEVSRPADRILR 185
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 280
++ GV+E+ L ++ AY G N + L ++ EL DG +R ++P
Sbjct: 186 EANELVERGVREITLLGQNVNAY-HGAGPNGDMTLAGLIWELDKIDGLERIRFTTSHPND 244
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + L E + +LH+PVQ+GSD +L MNR +T + +++ + P +
Sbjct: 245 MADDLIEAHGTCAK--LMPYLHLPVQAGSDKILKRMNRSHTAESYLRLIERIRAARPDIV 302
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
++ D I GFP ET+ DF T++L+++ ++ + ++ RPGTPAA +V A R
Sbjct: 303 MSGDFIVGFPEETEADFQDTLDLVEQVRYGYAYSFKYSTRPGTPAAERAQVDPAEADDRL 362
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
+ L +V + GM GR + + +VG ++ V V G G A
Sbjct: 363 QRLQAVITRHQREIQDGMVGREVSVLFEKPGRQPGQMVGKSEYLHAVHVQDPGLEAGQIA 422
Query: 459 LVKITSVGRWSVFGEV 474
V+I + G S+ GE+
Sbjct: 423 RVRIVASGANSLAGEL 438
>UNIPROTKB|P0AEI1 [details] [associations]
symbol:miaB "isopentenyl-adenosine A37 tRNA methylthiolase
MiaB" species:83333 "Escherichia coli K-12" [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0005575 "cellular_component" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 EMBL:U82598 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:C64801 RefSeq:NP_415194.1 RefSeq:YP_488952.1
ProteinModelPortal:P0AEI1 SMR:P0AEI1 DIP:DIP-48018N IntAct:P0AEI1
MINT:MINT-1233637 PaxDb:P0AEI1 PRIDE:P0AEI1
EnsemblBacteria:EBESCT00000004746 EnsemblBacteria:EBESCT00000015136
GeneID:12932238 GeneID:945260 KEGG:ecj:Y75_p0651 KEGG:eco:b0661
PATRIC:32116511 EchoBASE:EB3421 EcoGene:EG13657
BioCyc:EcoCyc:G6364-MONOMER BioCyc:ECOL316407:JW0658-MONOMER
BioCyc:MetaCyc:G6364-MONOMER Genevestigator:P0AEI1 Uniprot:P0AEI1
Length = 474
Score = 398 (145.2 bits), Expect = 8.1e-37, P = 8.1e-37
Identities = 135/440 (30%), Positives = 216/440 (49%)
Query: 86 GYALTDNSEEADIWLINT----QSAMDTLIA-----KCKSAKKP-LV--VAGCVP--QGS 131
GY LTD +EEAD+ L+NT + A + + K K P L+ V GCV +G
Sbjct: 31 GYQLTDVAEEADVLLLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGE 90
Query: 132 RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRK--KLPALD-LPKVRRNKFVE 187
+ V I+ G Q + R+ E++ +++G ++ ++ D LP+ R
Sbjct: 91 HIRQRAHYVDIIFGPQTLHRLPEMIN-SVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTA 149
Query: 188 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GR 246
+ I GC CTYC + RG S + ++ + + A GV+EV L ++ A+ G
Sbjct: 150 FVSIMEGCNKYCTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGE 209
Query: 247 DI-GVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHV 303
+ G L +VA + DG +R ++P +E +I EV R P + SFLH+
Sbjct: 210 NYDGTTGSFADLLRLVAAI--DGIDRIRFTTSHP---IEFTDDIIEVYRDTPELVSFLHL 264
Query: 304 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 363
PVQSGSD +L+ M R +T +++ ++ L P +QI++D I GFPGET EDF +T+ L
Sbjct: 265 PVQSGSDRILNLMGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKL 324
Query: 364 IKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF--EAFTPYLGMEGRV 420
I + F + F RPGTPAA M VP K+R L +A M G
Sbjct: 325 IADVNFDMSYSFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTT 384
Query: 421 ERIWITEIAADGI-HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 479
+RI + + I L G T+ V T +M+G V+IT V S+ G+V++ +
Sbjct: 385 QRILVEGTSRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTED 444
Query: 480 QVDDKIASN-RRISSQVRQD 498
++ ++A + ++ R++
Sbjct: 445 EMGLRVAETPESVIARTRKE 464
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 41/120 (34%), Positives = 64/120 (53%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINT----QSAMDTLIA 112
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NT + A + +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 113 -----KCKSAKKP-LV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
K K P L+ V GCV +G + V I+ G Q + R+ E++ +++G
Sbjct: 62 QLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDIIFGPQTLHRLPEMIN-SVRG 120
>UNIPROTKB|Q9KTE0 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 397 (144.8 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 139/443 (31%), Positives = 223/443 (50%)
Query: 83 SAFGYALTDNSEEADIWLINT----QSAMDTL---IAKCKSAK--KPLVV---AGCVP-- 128
+A GY LT+ EEAD+ L+NT + A + + + + K+ K KP VV GCV
Sbjct: 28 AANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKKPGVVIGVGGCVATQ 87
Query: 129 QGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPALD-LPKVRRNK 184
+G RD V I G Q + R+ E+++++ V + ++ D LP+ R
Sbjct: 88 EGDSIRDRAPYVDV-IFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLPEPRAEG 146
Query: 185 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY 244
+ I GC CTYC + RG S ++ ++ + + GV+EV L ++ AY
Sbjct: 147 PTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAY 206
Query: 245 -G--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSF 300
G D G+ L +VA + DG +R ++P LE +I V P + SF
Sbjct: 207 RGATHDGGICSFAELLRLVATI--DGIDRIRFTTSHP---LEFTDDIIAVYEDTPELVSF 261
Query: 301 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360
LH+PVQSGSD +L+ M R +T ++++++ L + P +QI++D I GFPGETD+DF T
Sbjct: 262 LHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDT 321
Query: 361 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTSVF--EAFTPYLGME 417
+ LI++ F F PRPGTPAA S VKK R EL +A M
Sbjct: 322 MKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSRLML 381
Query: 418 GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
G +RI + + D + L G T+ V + +++G VKI V S+ GE+++
Sbjct: 382 GTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVFPNSLRGELLR 441
Query: 477 ILNQVDDKIASN-RRISSQVRQD 498
+++ +IA++ + ++ R++
Sbjct: 442 TEQEMNLRIATSPSEMKAKTRRE 464
>TIGR_CMR|VC_0962 [details] [associations]
symbol:VC_0962 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
PIR:E82261 RefSeq:NP_230609.1 ProteinModelPortal:Q9KTE0
DNASU:2614215 GeneID:2614215 KEGG:vch:VC0962 PATRIC:20081024
Uniprot:Q9KTE0
Length = 474
Score = 397 (144.8 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 139/443 (31%), Positives = 223/443 (50%)
Query: 83 SAFGYALTDNSEEADIWLINT----QSAMDTL---IAKCKSAK--KPLVV---AGCVP-- 128
+A GY LT+ EEAD+ L+NT + A + + + + K+ K KP VV GCV
Sbjct: 28 AANGYELTEIPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKKPGVVIGVGGCVATQ 87
Query: 129 QGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPALD-LPKVRRNK 184
+G RD V I G Q + R+ E+++++ V + ++ D LP+ R
Sbjct: 88 EGDSIRDRAPYVDV-IFGPQTLHRLPEMIKQSQTSDAPVMDISFPEIEKFDRLPEPRAEG 146
Query: 185 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY 244
+ I GC CTYC + RG S ++ ++ + + GV+EV L ++ AY
Sbjct: 147 PTAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLAEQGVREVNLLGQNVNAY 206
Query: 245 -G--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSF 300
G D G+ L +VA + DG +R ++P LE +I V P + SF
Sbjct: 207 RGATHDGGICSFAELLRLVATI--DGIDRIRFTTSHP---LEFTDDIIAVYEDTPELVSF 261
Query: 301 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360
LH+PVQSGSD +L+ M R +T ++++++ L + P +QI++D I GFPGETD+DF T
Sbjct: 262 LHLPVQSGSDRILTMMKRPHTAIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDT 321
Query: 361 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTSVF--EAFTPYLGME 417
+ LI++ F F PRPGTPAA S VKK R EL +A M
Sbjct: 322 MKLIRDVDFDMSFSFIFSPRPGTPAADYPCDLSEEVKKERLYELQQQINSQAMRYSRLML 381
Query: 418 GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
G +RI + + D + L G T+ V + +++G VKI V S+ GE+++
Sbjct: 382 GTEQRILVEGPSKKDLMELRGRTENNRVVNFEGSPDLIGQFVDVKIVDVFPNSLRGELLR 441
Query: 477 ILNQVDDKIASN-RRISSQVRQD 498
+++ +IA++ + ++ R++
Sbjct: 442 TEQEMNLRIATSPSEMKAKTRRE 464
>TIGR_CMR|CJE_0508 [details] [associations]
symbol:CJE_0508 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_178526.1 ProteinModelPortal:Q5HW09 STRING:Q5HW09
GeneID:3231269 KEGG:cjr:CJE0508 PATRIC:20042728
ProtClustDB:PRK14339 BioCyc:CJEJ195099:GJC0-518-MONOMER
Uniprot:Q5HW09
Length = 433
Score = 395 (144.1 bits), Expect = 1.8e-36, P = 1.8e-36
Identities = 124/437 (28%), Positives = 214/437 (48%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
++++T GC+ N DSE+M +L+ YALT++ +EAD+ LINT S + + K S
Sbjct: 6 LFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADLILINTCSVREKPVHKLFSEVG 65
Query: 117 ----AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
KK + V GC G+ K V V G + I ++ + ++ T K V +
Sbjct: 66 GFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVLGARNISKITQAIK-TPKFMGVDI 124
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+ + A R + + + I++GC CTYC H RG S + +
Sbjct: 125 DYDESEFAF--ADFRNSIYKSYINISIGCDKHCTYCIVPHTRGDEISIPFNIIYKEAQKA 182
Query: 227 IADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP-PFILEH 284
+ G KE++L ++ YG+ + + + ++ EL + RI T+P P ++
Sbjct: 183 VEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLEELSTI-EDLERIRFTSPHPLHMDD 241
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
K + +P V +H+P+QSGS +L AM R YT + L EL P + I+TD
Sbjct: 242 -KFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGYTKEWYLNRALKLRELCPNVSISTD 300
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-SREL 403
II FPGE+++DF +T++++++ +F Q+ ++ RP T AA M P+ + ++ SR L
Sbjct: 301 IIVAFPGESEKDFEETMDVLEKVRFEQIFSFKYSKRPLTKAATM---PNQIDEETASRRL 357
Query: 404 TSVFEAFTPYLG-----MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
+++ + L E + ++ E+ A G + G T V V + +LG
Sbjct: 358 STLQNRHSEILDEIVKKQENKTFKVLFEELRA-GNSIAGRTDNNFLVQVEGSEELLGQFK 416
Query: 459 LVKITSVGRWSVFGEVI 475
VKIT+ R ++GE++
Sbjct: 417 EVKITNAKRMVLYGEIV 433
>UNIPROTKB|Q607P8 [details] [associations]
symbol:MCA1711 "Putative uncharacterized protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AE017282
GenomeReviews:AE017282_GR Gene3D:3.80.30.20 InterPro:IPR023404
GO:GO:0009451 TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579
HOGENOM:HOG000224765 OMA:VITFGCR RefSeq:YP_114150.1
ProteinModelPortal:Q607P8 GeneID:3102185 KEGG:mca:MCA1711
PATRIC:22607260 ProtClustDB:CLSK2523614 Uniprot:Q607P8
Length = 436
Score = 387 (141.3 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 128/433 (29%), Positives = 203/433 (46%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK----- 115
I +++ GC N+++ E A + A G+ L + +AD+ ++N+ + + K +
Sbjct: 3 INLQSLGCRLNEAELESWAREFQAAGHRLVSETGDADLIVLNSCAVTAEAVRKSRQMIRR 62
Query: 116 ----SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID--RVVEVVEETLKGHEVRLLHR 169
S + LV++GC D GV +V V D R+VE+ L +
Sbjct: 63 TQRLSPRARLVLSGCYATLHGDEAAALGVDLV-VSNADKSRLVEIAARELALEAMPEFST 121
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ A R+ FV++ GC CT+C ARG S ++ +R + A+
Sbjct: 122 EPGEAALFALGRQRAFVKVQD---GCRYRCTFCIVTVARGEERSRLPAEVIREIRRLQAE 178
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
GV+EV L+ G YG D+G+ L L+ +I+ E LR+G P + ++
Sbjct: 179 GVQEVVLTGVHLGGYGSDLGLPLDALIRSILQETE---IPRLRLGSLEPWDLPPGFFDLF 235
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
E +P LH+P+QSGSD VL M R +F + D VP + I TDII GF
Sbjct: 236 E---NPRFMPHLHLPLQSGSDTVLKRMARRCKSEEFARLADHARRQVPDINITTDIIVGF 292
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV-F 407
PGET+ ++ +++ I+ F +H+ + R GT AA M VP+ + K+RSR L +
Sbjct: 293 PGETEREWEESLQFIETIGFGDIHVFTYSVREGTKAAAMGGHVPAEIKKERSRVLHELAL 352
Query: 408 EAFTPYLG-MEGR-VERIWITEIAADGIHLVGHTKGYVQVLV--PSTG--NMLGTSALVK 461
LG GR + +W E DG G+T Y++V + P TG N + LVK
Sbjct: 353 GQKRALLGRFVGREMPVLW--ENRRDGADR-GYTPNYLRVAIQTPETGLTNRITPVRLVK 409
Query: 462 ITSVGRWSVFGEV 474
+ + G + G V
Sbjct: 410 VDASGEFLWCGPV 422
>TIGR_CMR|CHY_1164 [details] [associations]
symbol:CHY_1164 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0006400 "tRNA modification" evidence=ISS] [GO:0016782
"transferase activity, transferring sulfur-containing groups"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016740 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125
RefSeq:YP_360009.1 ProteinModelPortal:Q3ACX5 STRING:Q3ACX5
GeneID:3726572 KEGG:chy:CHY_1164 PATRIC:21275468 KO:K14441
BioCyc:CHYD246194:GJCN-1163-MONOMER Uniprot:Q3ACX5
Length = 438
Score = 385 (140.6 bits), Expect = 2.6e-35, P = 2.6e-35
Identities = 106/361 (29%), Positives = 189/361 (52%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
++ + GC+ NQ+DSE + G L + GY + N EE+D+ ++NT +A++ I + +
Sbjct: 4 FILSLGCTKNQADSEVIMGILESKGYVRSLNPEESDLLIVNTCGFIAAAIEESIEEILNL 63
Query: 118 ---KKP---LVVAGCVPQ--GSRDLKELEGVSIVGV-QQIDRVVEVVEETLKGHEVRLLH 168
KKP ++VAGC+ Q G K L V + ++I+ + +++ + + +++ L
Sbjct: 64 VHLKKPGQKILVAGCLVQREGKELAKHLPEVDLFFTPREINNLDKLLADLGENNKLVLSE 123
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
L P+ + N+ + I GC CTYC RG S ++ ++ ++ +
Sbjct: 124 PGFLNLEKKPRAKSNEVYRYIKIADGCDNRCTYCTIPAIRGKYTSRPLDDILEEIKDTLK 183
Query: 229 DGVKEVWLSSEDTGAYGRDI-G-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
G+KE+ L ++DT AYG D+ G L LL I + G+ +R+ P I L
Sbjct: 184 QGIKEIILVAQDTTAYGIDLYGEFKLVELLRKIGSI---KGNFWVRLMYLYPDKITPEL- 239
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
I E+ +P V ++ VP+Q +L M R+ + + + ++ L + +P + I T I
Sbjct: 240 -INEIKENPKVIKYVDVPLQHIHPEILKKMGRKGSSEEIISTLERLRKEIPDITIRTTFI 298
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTS 405
GFPGET+E FN ++ +K++KF ++ +Y GTPAA+MK ++P V ++R +L
Sbjct: 299 VGFPGETEEQFNYLLDFVKKFKFNRLGAFPYYREKGTPAAKMKGQIPKKVKEQRYEKLME 358
Query: 406 V 406
V
Sbjct: 359 V 359
>UNIPROTKB|Q83DX3 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:227377 "Coxiella burnetii RSA
493" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 381 (139.2 bits), Expect = 7.3e-35, P = 7.3e-35
Identities = 125/414 (30%), Positives = 201/414 (48%)
Query: 86 GYALTDNSEEADIWLINTQSAMDTLIAKCKSA---------KKPLVV---AGCVP--QGS 131
G LT++ AD++L+NT S + K S K+P VV GCV +G
Sbjct: 30 GLELTEDPAVADVFLLNTCSVREKAQTKVFSELGRWRPFKEKRPHVVIGVGGCVASQEGE 89
Query: 132 RDLKELEGVSIV-GVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEI 188
LK+ V IV G Q + R+ ++++ + K V + ++ D LP+ R
Sbjct: 90 TILKQAPFVDIVFGPQTLHRLPDLLDSVIQKRKSVVDITFPEIEKFDRLPQPRAEGPSAF 149
Query: 189 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-G-- 245
+ I GC CT+C + RG S + ++ V ++ GV+E+ L ++ Y G
Sbjct: 150 VSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAEVASLCEQGVREITLLGQNVNDYRGLM 209
Query: 246 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP 304
D V +L +L++ + A D +R ++P E+L I P + + LH+P
Sbjct: 210 HDGQVADLALLIHYLAAM---DNIERIRFTTSHPSAFSENL--IDAYAEEPKLANHLHLP 264
Query: 305 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 364
VQSGSD +L+AM R YT+ ++++ + L + P + +++D I GFPGETD DF T+NLI
Sbjct: 265 VQSGSDRILAAMKRNYTVLEYKSKIRKLRAVRPDISLSSDFIIGFPGETDADFEATMNLI 324
Query: 365 KEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEAFTPYLG--MEGRVE 421
+ F + PRPGTPAA++ VP AV K+R L + A + M G +
Sbjct: 325 HDMGFDHSFSFIYSPRPGTPAAQLPDDVPMAVKKERLAILQNRINAKAAEISQSMVGTQQ 384
Query: 422 RIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 474
RI +T + L G T+ V ++G +KI +S++GE+
Sbjct: 385 RILVTGPSKKYPDQLSGRTENNRVVNFNGDTPLIGQMVTIKIKEARPYSLWGEI 438
>TIGR_CMR|CBU_0569 [details] [associations]
symbol:CBU_0569 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_819599.1 ProteinModelPortal:Q83DX3
PRIDE:Q83DX3 GeneID:1208454 KEGG:cbu:CBU_0569 PATRIC:17929837
BioCyc:CBUR227377:GJ7S-573-MONOMER Uniprot:Q83DX3
Length = 439
Score = 381 (139.2 bits), Expect = 7.3e-35, P = 7.3e-35
Identities = 125/414 (30%), Positives = 201/414 (48%)
Query: 86 GYALTDNSEEADIWLINTQSAMDTLIAKCKSA---------KKPLVV---AGCVP--QGS 131
G LT++ AD++L+NT S + K S K+P VV GCV +G
Sbjct: 30 GLELTEDPAVADVFLLNTCSVREKAQTKVFSELGRWRPFKEKRPHVVIGVGGCVASQEGE 89
Query: 132 RDLKELEGVSIV-GVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEI 188
LK+ V IV G Q + R+ ++++ + K V + ++ D LP+ R
Sbjct: 90 TILKQAPFVDIVFGPQTLHRLPDLLDSVIQKRKSVVDITFPEIEKFDRLPQPRAEGPSAF 149
Query: 189 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-G-- 245
+ I GC CT+C + RG S + ++ V ++ GV+E+ L ++ Y G
Sbjct: 150 VSIMEGCSKYCTFCVVPYTRGEEISRPFDDVIAEVASLCEQGVREITLLGQNVNDYRGLM 209
Query: 246 RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP 304
D V +L +L++ + A D +R ++P E+L I P + + LH+P
Sbjct: 210 HDGQVADLALLIHYLAAM---DNIERIRFTTSHPSAFSENL--IDAYAEEPKLANHLHLP 264
Query: 305 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 364
VQSGSD +L+AM R YT+ ++++ + L + P + +++D I GFPGETD DF T+NLI
Sbjct: 265 VQSGSDRILAAMKRNYTVLEYKSKIRKLRAVRPDISLSSDFIIGFPGETDADFEATMNLI 324
Query: 365 KEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEAFTPYLG--MEGRVE 421
+ F + PRPGTPAA++ VP AV K+R L + A + M G +
Sbjct: 325 HDMGFDHSFSFIYSPRPGTPAAQLPDDVPMAVKKERLAILQNRINAKAAEISQSMVGTQQ 384
Query: 422 RIWITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 474
RI +T + L G T+ V ++G +KI +S++GE+
Sbjct: 385 RILVTGPSKKYPDQLSGRTENNRVVNFNGDTPLIGQMVTIKIKEARPYSLWGEI 438
>TIGR_CMR|SO_1181 [details] [associations]
symbol:SO_1181 "tRNA-i(6)A37 modification enzyme MiaB"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
ProtClustDB:PRK14325 RefSeq:NP_716806.1 ProteinModelPortal:Q8CX45
GeneID:1169010 KEGG:son:SO_1181 PATRIC:23522002 Uniprot:Q8CX45
Length = 474
Score = 378 (138.1 bits), Expect = 1.6e-34, P = 1.6e-34
Identities = 131/442 (29%), Positives = 222/442 (50%)
Query: 86 GYALTDNSEEADIWLINT----QSAMDTL---IAKCKSAK--KP-LV--VAGCVP-QGSR 132
GY LT+ +EEADI L+NT + A + + + + K+ K P L+ V GCV Q +
Sbjct: 31 GYTLTEEAEEADILLLNTCSIREKAQEKVFHQLGRWKTLKDKNPDLIIGVGGCVASQEGK 90
Query: 133 DLKE-LEGVSIV-GVQQIDRVVEVVEETLKGHEVRL-LHRKKLPALD-LPKVRRNKFVEI 188
+K+ + V I+ G Q + R+ E++E+ +G + + + ++ D LP+ R
Sbjct: 91 AIKDRAQCVDIIFGPQTLHRLPEMIEQVRRGEKAVIDVSFPEIEKFDRLPEPRAEGPTAF 150
Query: 189 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-G-- 245
+ I GC C++C + RG S + ++ + + GV+EV L ++ AY G
Sbjct: 151 VSIMEGCSKYCSFCVVPYTRGEEVSRPSDDIILEIAQLAEQGVREVNLLGQNVNAYRGAT 210
Query: 246 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVP 304
D G+ L VA + DG +R ++P +E ++I +V P + SFLH+P
Sbjct: 211 HDGGICTFAELLRYVAAI--DGIDRIRFTTSHP---IEFTQDIIDVYEDTPELVSFLHLP 265
Query: 305 VQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 364
VQSGSD +L+AM R + ++++++ L + P +QI++D I GFPGET EDF T+ LI
Sbjct: 266 VQSGSDRILTAMKRGHMAIEYKSIIRRLRKARPDIQISSDFIIGFPGETQEDFADTMKLI 325
Query: 365 KEYKFPQVHISQFYPRPGTPAARMKKVPSAV-VKKRSRELTSVFEAFTPYL-----GMEG 418
++ F + RPGTPAA + P V ++++ + L + + T M G
Sbjct: 326 EDVAFDHSFSFIYSARPGTPAADL---PDDVDMEEKKQRLAILQDRITQQAMRYSRHMMG 382
Query: 419 RVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 477
V+RI + + + L G T+ V +GT V+I V S+ G+ I+
Sbjct: 383 TVQRILVEGPSVKNPMELRGRTENNRVVNFEGLPKHIGTFVDVEIVDVYTNSLRGKFIRG 442
Query: 478 LNQVDDKIASNRRISSQVRQDK 499
+++D + N R S + + K
Sbjct: 443 EDEMD--LRRNLRPSDILAKHK 462
Score = 138 (53.6 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 41/122 (33%), Positives = 71/122 (58%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT----QSAMDTL-- 110
++ +++KT+GC N+ DS MA L + GY LT+ +EEADI L+NT + A + +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLGEYQGYTLTEEAEEADILLLNTCSIREKAQEKVFH 61
Query: 111 -IAKCKSAK--KP-LV--VAGCVP-QGSRDLKE-LEGVSIV-GVQQIDRVVEVVEETLKG 161
+ + K+ K P L+ V GCV Q + +K+ + V I+ G Q + R+ E++E+ +G
Sbjct: 62 QLGRWKTLKDKNPDLIIGVGGCVASQEGKAIKDRAQCVDIIFGPQTLHRLPEMIEQVRRG 121
Query: 162 HE 163
+
Sbjct: 122 EK 123
>TIGR_CMR|APH_0880 [details] [associations]
symbol:APH_0880 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 RefSeq:YP_505456.1
ProteinModelPortal:Q2GJJ5 STRING:Q2GJJ5 GeneID:3929963
KEGG:aph:APH_0880 PATRIC:20950460 KO:K06168 OMA:RDSEHII
ProtClustDB:CLSK747303 BioCyc:APHA212042:GHPM-893-MONOMER
Uniprot:Q2GJJ5
Length = 444
Score = 373 (136.4 bits), Expect = 5.9e-34, P = 5.9e-34
Identities = 113/382 (29%), Positives = 179/382 (46%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL--- 110
T +Y++++GC N D+ M L GYA E+ADI LINT + A + L
Sbjct: 2 TRGLYIESYGCQMNVYDALMMEDLLRPVGYAAVSRPEDADIILINTCHIREKASEKLYST 61
Query: 111 IAKCKSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVEVVEETLKG 161
+ + + KK L+VAGCV Q G + V++V G+ + ++ V+ K
Sbjct: 62 LGRMRVIKKEECILIVAGCVAQAEGEAVFERAPYVNVVVGPQGLHTLPELIMKVKRDKKQ 121
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ K A+ + + + I GC CT+C + RG S VE+++
Sbjct: 122 INIEFPVVSKFDAISIDRKANGGVSAYVSIQEGCDKFCTFCVVPYTRGPEYSRDVEAILE 181
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
V+ + G KE+ L ++ AY N L I DG +R ++P +
Sbjct: 182 EVKQLTDRGTKEIVLIGQNVNAYHGTYKGNEWDLGKLIQKVSLIDGVERIRYTTSHPRDM 241
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
L E + + F+H+PVQSGSDA+L MNR++T ++ VV+ L + M +
Sbjct: 242 HPSLYEAHRDEKK--LAPFVHLPVQSGSDAILRKMNRKHTAEEYLRVVEQLKDSNKNMAL 299
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
++D I GFPGET++DF +T+ L++ F + ++ PRPGTP A +VP R
Sbjct: 300 SSDFIVGFPGETEKDFEETMKLVESVGFALSYSFKYSPRPGTPGAEYSNQVPEEEKSARL 359
Query: 401 RELTSVF--EAFTPYLGMEGRV 420
L + + MEGRV
Sbjct: 360 AALQGLLTKQQLQFNKSMEGRV 381
>TIGR_CMR|DET_0962 [details] [associations]
symbol:DET_0962 "tRNA modification enzyme, MiaB family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS]
InterPro:IPR005839 InterPro:IPR006467 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 Pfam:PF00919 Pfam:PF04055
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_181685.1 ProteinModelPortal:Q3Z7W4 STRING:Q3Z7W4
GeneID:3229703 KEGG:det:DET0962 PATRIC:21608973 OMA:ERINTKA
ProtClustDB:CLSK837155 BioCyc:DETH243164:GJNF-963-MONOMER
Uniprot:Q3Z7W4
Length = 413
Score = 362 (132.5 bits), Expect = 1.0e-32, P = 1.0e-32
Identities = 113/416 (27%), Positives = 198/416 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP 120
I + T GC NQ+++E + + GY L + DI+++N S T +A K+ +
Sbjct: 4 IALDTLGCKLNQAETEAFGREFARAGYRLVSPQDNWDIYILN--SCTVTHVADRKARYQI 61
Query: 121 LVVAGCVPQGSRDLKEL---EGVSIVGVQQIDRVVEVVEETLKGHEV-RLLHRKKL-PAL 175
+ P G L G + D +++ ++ E+ RL + L P+L
Sbjct: 62 RIARRHNPAGFICLMGCYAQNGGDKLSCPDADLILDNCRKSGIAAEISRLFPPEALAPSL 121
Query: 176 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 235
R F++I GC C+YC R H V+ ++ + A+G +E+
Sbjct: 122 -YENGRTRSFIKIQD---GCDNFCSYCIVPFVRRHKSCRRVDEIISEINLRQAEGYQEIV 177
Query: 236 LSSEDTGAYGRDIGVNLPILLNAIVA--ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
L+ + G Y GV+L L+ AI+A ++P LR+ P I L + E
Sbjct: 178 LTGTEIGEYASG-GVDLAGLIEAILANTQIP-----RLRLSSLQPGEITPRLLALWE--- 228
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+P + H+ +QSGSD +L+ M R Y+L D+ ++ + VPG + TD+I GFPGET
Sbjct: 229 NPRLCRHFHMALQSGSDCILALMRRPYSLGDYNRALEAIRSQVPGAAVTTDLIVGFPGET 288
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTP 412
+EDF ++ I++ F +VH + R GT A+ M+ K+ +V+KKR + + ++ +
Sbjct: 289 EEDFALSLKYIQQAGFARVHAFPYSERLGTLASGMEGKIDPSVIKKRLSLVMAAAKSVSM 348
Query: 413 YLGMEGR---VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+ + E +W ++ DG+ G+T Y++V +G T + VK+ +
Sbjct: 349 QYRRQSKGLGKEVLWENKMR-DGLWF-GYTSDYIRVYGRFSGQPTNTISQVKLVKI 402
>UNIPROTKB|Q608N1 [details] [associations]
symbol:miaB "(Dimethylallyl)adenosine tRNA
methylthiotransferase MiaB" species:243233 "Methylococcus
capsulatus str. Bath" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AE017282 GenomeReviews:AE017282_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_113916.1 ProteinModelPortal:Q608N1 GeneID:3102404
KEGG:mca:MCA1459 PATRIC:22606754 Uniprot:Q608N1
Length = 458
Score = 354 (129.7 bits), Expect = 7.8e-32, P = 7.8e-32
Identities = 127/424 (29%), Positives = 199/424 (46%)
Query: 87 YALTDNSEEADIWLINTQSAMDTLIAKCKSA---------KKPLVV---AGCVP--QGSR 132
+ L + EEAD+ L+NT S D K S ++P VV GCV +G
Sbjct: 32 FELARSPEEADVLLLNTCSIRDKAQEKVFSQLGRWRPIKLRRPEVVIGVGGCVASQEGEA 91
Query: 133 DLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALD----LPKVRRNKFVE 187
K V IV G Q + R+ ++E+ E R + PA++ LP+ R +
Sbjct: 92 LQKRAPYVDIVFGPQTLHRLPSMLEQVRC--ERRPVVDVSFPAIEKFDALPEPRADGPKA 149
Query: 188 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-G- 245
+ + GC CT+C + RG S V+ ++ + + GV+EV L ++ AY G
Sbjct: 150 FVSVMEGCGKYCTFCVVPYTRGEEISRPVDDVIAEIVALAEQGVREVNLLGQNVNAYRGV 209
Query: 246 -RDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLH 302
D G+ +L +L++ + A DG +R ++P +E + E R P + S LH
Sbjct: 210 LADGGMADLALLMHYVAAV---DGIDRIRFTTSHP---VEFSDALIEAFRDIPQLVSHLH 263
Query: 303 VPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 362
+PVQSGSD +L M R +T +++ V L E+ P + +++D I GFPGETDEDF T+
Sbjct: 264 LPVQSGSDRILRLMKRGHTRAEYMAKVAKLREIRPDLSLSSDFIVGFPGETDEDFEDTMA 323
Query: 363 LIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSRELTSVFEAFTPYLG--MEGR 419
LI++ F Q F RPGTPAA M VP + R L + +G M G
Sbjct: 324 LIEQLGFDQSFSFIFSARPGTPAAAMADDVPPETKRARLARLQAKIADNAAKIGASMVGS 383
Query: 420 VERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 478
++ + + + + L G T+ V ++G V IT S+ G +I +
Sbjct: 384 IQSVLVEGTSRKNFNELSGRTENNRVVNFAGHPRLIGQFVDVVITESLPNSLRGRLIGVA 443
Query: 479 NQVD 482
++ D
Sbjct: 444 HESD 447
>TIGR_CMR|DET_1385 [details] [associations]
symbol:DET_1385 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 KO:K06168 OMA:RDSEHII RefSeq:YP_182095.1
ProteinModelPortal:Q3Z6Q4 STRING:Q3Z6Q4 GeneID:3229346
KEGG:det:DET1385 PATRIC:21609799 ProtClustDB:PRK14336
BioCyc:DETH243164:GJNF-1386-MONOMER Uniprot:Q3Z6Q4
Length = 418
Score = 352 (129.0 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 118/425 (27%), Positives = 195/425 (45%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
Y+ T GC NQ++SE + +GY+L D +E+A++ L+N+ + A+ K +
Sbjct: 5 YLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREH--AENKVINRLH 62
Query: 122 VVAGCVPQGSRDLKELEGVSIVG--VQQIDRVVEVVEETLKGHEVRLLHRKKLP-ALDLP 178
++ + R L G +VG + + + V+ + L ++P LP
Sbjct: 63 ILRKLKDKNPRLKIALTGC-LVGQDIASVRKKFPFVDYIFQPGA--LPDWGEIPEGFILP 119
Query: 179 KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSS 238
+ + I GC CTYC + RG S ++ L ++ G +EV L
Sbjct: 120 L--KPPVSASITIMQGCDNFCTYCIVPYRRGREKSRSISELCCEAAELVRRGSREVVLLG 177
Query: 239 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 298
++ +YG D+ P L + + A G +R ++P I + L + L C +
Sbjct: 178 QNVDSYGHDLPEK-PCLADLLYALSDIPGLLRIRFLTSHPKDISQKLIDAMASLHKVC-H 235
Query: 299 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 358
S L +PVQ+G+D +L+AM R YT +R +V L +P + + TD+I GFP ET E F+
Sbjct: 236 S-LSLPVQAGADTILAAMRRGYTSEQYRELVGRLKTAMPDISLQTDLIVGFPSETAEQFD 294
Query: 359 QTVNLIKEYKFPQVHISQFYPRPGTPAAR--MKKVPSAVVKKRSRELTSVFEAFTPYLGM 416
Q+ L+ + + +H++ + PRP T AAR VP A KKR +L + T
Sbjct: 295 QSYKLMSDIGYDAIHVAAYSPRPQTAAARDMADDVPVAE-KKRRLKLIEDLQKETVSKAN 353
Query: 417 EGRVERIWITEIAADGIHL---VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
V+ E+ +G G T G V + S + G VKI WS+ +
Sbjct: 354 SALVDTF--AEVLVEGRQKNKWQGRTLGGKLVFLESDLPLEGCLINVKIFKASPWSLQAK 411
Query: 474 VIKIL 478
++KIL
Sbjct: 412 LVKIL 416
>TIGR_CMR|ECH_0837 [details] [associations]
symbol:ECH_0837 "tRNA-i(6)A37 modification enzyme MiaB"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
PROSITE:PS50926 TIGRFAMs:TIGR00089 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 ProtClustDB:PRK14325
RefSeq:YP_507633.1 ProteinModelPortal:Q2GG00 STRING:Q2GG00
GeneID:3927997 KEGG:ech:ECH_0837 PATRIC:20577090
BioCyc:ECHA205920:GJNR-840-MONOMER Uniprot:Q2GG00
Length = 442
Score = 329 (120.9 bits), Expect = 4.5e-29, P = 4.5e-29
Identities = 87/290 (30%), Positives = 148/290 (51%)
Query: 121 LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEET--LKGHEVRLLHR--KKLP 173
+VVAGCV Q G + V IV G Q I + E++ + +K + + K
Sbjct: 75 IVVAGCVAQAEGEQIFARAPFVDIVVGPQSIHTLPELIIKARRMKKQVINIDFPIISKFD 134
Query: 174 ALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
A+ + + +N+ V + + GC CT+C + RG S TVE++ + GVK
Sbjct: 135 AIPVEEYTKNQEVSAFISVQEGCNKFCTFCVVPYTRGEEYSRTVEAIFNEALVLSDSGVK 194
Query: 233 EVWLSSEDTGAY-GRDIGVNLPI-LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
E+ L ++ AY G G + L +A++P +R ++P + + L E
Sbjct: 195 EITLIGQNVNAYHGTYKGCEWDLGKLIQYLAKIP--NIERIRYTTSHPRDMHQSLYEAHR 252
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ F+H+P+QSGSD +L MNR++T ++ +++ L + P + ++D I GFP
Sbjct: 253 --SETKLMPFVHLPIQSGSDRILKKMNRKHTAEEYIDIINNLRKQRPDIAFSSDFIVGFP 310
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
GET+EDF T+ L++E F Q + ++ PRPGTP+A ++P + +R
Sbjct: 311 GETEEDFEHTMKLVQEVNFSQAYSFKYSPRPGTPSAEYPNQIPEEIKSQR 360
>TIGR_CMR|NSE_0832 [details] [associations]
symbol:NSE_0832 "tRNA-i(6)A37 modification enzyme MiaB"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0016782 "transferase
activity, transferring sulfur-containing groups" evidence=ISS]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168 RefSeq:YP_506702.1
ProteinModelPortal:Q2GCU4 STRING:Q2GCU4 GeneID:3932248
KEGG:nse:NSE_0832 PATRIC:22681657 ProtClustDB:CLSK2528018
BioCyc:NSEN222891:GHFU-838-MONOMER Uniprot:Q2GCU4
Length = 471
Score = 327 (120.2 bits), Expect = 2.0e-27, P = 2.0e-27
Identities = 101/375 (26%), Positives = 178/375 (47%)
Query: 110 LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--GHEV 164
L+ K K + +VVAGCV Q G ++ E V +V G Q I + E++ + + G +
Sbjct: 93 LLQKKKQERILIVVAGCVAQAEGEEIMRRAENVDVVVGPQSIHSLPELIAKVNRQSGKAI 152
Query: 165 RL----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + + A + K R + L I GC C +C + RG S + E +
Sbjct: 153 KMEFDPIEKFDYLAEETRKRRVPQSSAFLSIQEGCDKFCAFCVVPYTRGAEYSRSTEEVY 212
Query: 221 GRVRTVIADGVKEVWLSSEDTGAY-GR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
++ GVKE+ L ++ Y G D G N + L +++ L S + RI T
Sbjct: 213 REALSLTTKGVKEITLLGQNVNGYHGTLDSG-NKVLNLGQLISRLGKIPS-LKRIRYTTS 270
Query: 279 PFILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ H KE+ + + + F+H+PVQSGSD +L MNR+YT +D+ +++
Sbjct: 271 HPVDMH-KELYDAHANESKLMPFVHLPVQSGSDKILKQMNRKYTTADYLKIINEFQNARS 329
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
+ ++D I GFPGE+D+DF QT+ LI++ + Q + ++ PRPGTP A ++
Sbjct: 330 DIAFSSDFIVGFPGESDDDFQQTLALIEQVNYAQCYSFKYSPRPGTPGATYPQISEETKN 389
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
R ++L + + M G+ + + D I G T+ Y+Q + N+L
Sbjct: 390 TRLQKLQQLLKEKQLEFNKKMIGKTVTVLFDKKHPDKIS--GRTE-YMQQVFSDDSNLLD 446
Query: 456 TSALVKITSVGRWSV 470
+++ +++
Sbjct: 447 KIVTMRVEDASTFTL 461
Score = 124 (48.7 bits), Expect = 0.00021, P = 0.00021
Identities = 35/110 (31%), Positives = 59/110 (53%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------- 110
++KT+GC N DSE + +S G+ L++ +E+AD+ ++NT + A + L
Sbjct: 32 HIKTYGCQMNVYDSEMIEKIVSGLGFTLSERAEDADLIILNTCNIREKAAEKLYSELGQI 91
Query: 111 --IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVV 155
+ K K + +VVAGCV Q G ++ E V +V G Q I + E++
Sbjct: 92 RLLQKKKQERILIVVAGCVAQAEGEEIMRRAENVDVVVGPQSIHSLPELI 141
>TIGR_CMR|CPS_3572 [details] [associations]
symbol:CPS_3572 "tRNA-i(6)A37 thiotransferase enzyme MiaB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0016782 "transferase activity,
transferring sulfur-containing groups" evidence=ISS] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006400
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY KO:K06168
RefSeq:YP_270240.1 ProteinModelPortal:Q47Y80 STRING:Q47Y80
GeneID:3520404 KEGG:cps:CPS_3572 PATRIC:21470075
ProtClustDB:PRK14325 BioCyc:CPSY167879:GI48-3594-MONOMER
Uniprot:Q47Y80
Length = 480
Score = 327 (120.2 bits), Expect = 2.7e-27, P = 2.7e-27
Identities = 119/431 (27%), Positives = 206/431 (47%)
Query: 83 SAFGYALTDNSEEADIWLINT----QSAMDTL---IAKCKSAK--KP--LV-VAGCVP-- 128
S G++L + +E+AD+ L+NT + A + + + + K+ K KP L+ V GCV
Sbjct: 28 STHGFSLVEEAEQADVILLNTCSIREKAQEKVFHQLGRWKNLKDKKPDLLIGVGGCVASQ 87
Query: 129 QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----EVRLLHRKKLPALDLPKVR-R 182
+G K V ++ G Q + R+ E++ + +V +K L PK
Sbjct: 88 EGDSIRKRAPFVDMIFGPQTLHRLPEMLNQLQHSKSPIIDVSFPEIEKFDRLPEPKADGA 147
Query: 183 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTG 242
+ FV I+ GC CT+C + RG S ++ ++ + + GV+EV L ++
Sbjct: 148 SAFVSIME---GCSKYCTFCVVPYTRGEEVSRPLDDVLYEIAQLAEQGVREVNLLGQNVN 204
Query: 243 AY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSF 300
AY G ++ + + DG +R ++P +E +I E P + +
Sbjct: 205 AYRGETHDGSICRFADLVRLVATIDGIDRIRYTTSHP---VEFTDDIIEAYTDVPELVNH 261
Query: 301 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360
LH+PVQSG D +L+ M R +T ++++ + L ++ P + +++D I GFPGETDEDF T
Sbjct: 262 LHLPVQSGCDRILTQMKRGHTALEYKSQIRKLKKVRPELSMSSDFIIGFPGETDEDFTAT 321
Query: 361 VNLIKEYKFPQVHISQFYP-RPGTPAARMKKVPSAVVKKRSRELTS---VFEAFTPYLGM 416
++LIK F + S Y RPGTPAA + S KK +L +A M
Sbjct: 322 MDLIKAVDF-DLSFSFIYSARPGTPAADLPDDISDQTKKDRLKLLQEQITHQALRIARQM 380
Query: 417 EGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
+R+ + + + L G T+ V + +++G +KIT V S+ GE++
Sbjct: 381 LNTEQRVLVEGPSRKNPMELRGKTENNRTVNFVAPHSVIGQFVDIKITDVVANSLRGELV 440
Query: 476 KILNQVDDKIA 486
+ ++ +IA
Sbjct: 441 REEKEMGLRIA 451
Score = 119 (46.9 bits), Expect = 0.00075, P = 0.00075
Identities = 37/116 (31%), Positives = 66/116 (56%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT----QSAMDTL-- 110
++ +Y+KT+GC N+ DS+ MA L S G++L + +E+AD+ L+NT + A + +
Sbjct: 2 SKKLYIKTWGCQMNEYDSQKMAELLDSTHGFSLVEEAEQADVILLNTCSIREKAQEKVFH 61
Query: 111 -IAKCKSAK--KP--LV-VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEE 157
+ + K+ K KP L+ V GCV +G K V ++ G Q + R+ E++ +
Sbjct: 62 QLGRWKNLKDKKPDLLIGVGGCVASQEGDSIRKRAPFVDMIFGPQTLHRLPEMLNQ 117
>FB|FBgn0037816 [details] [associations]
symbol:CG6345 species:7227 "Drosophila melanogaster"
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] [GO:0016740
"transferase activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 EMBL:AE014297 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 OMA:CGRTDGN EMBL:AY071094 RefSeq:NP_650002.1
UniGene:Dm.31302 ProteinModelPortal:Q9VGZ1 SMR:Q9VGZ1 STRING:Q9VGZ1
PRIDE:Q9VGZ1 EnsemblMetazoa:FBtr0082258 GeneID:41271
KEGG:dme:Dmel_CG6345 UCSC:CG6345-RA FlyBase:FBgn0037816
InParanoid:Q9VGZ1 OrthoDB:EOG4KPRS9 PhylomeDB:Q9VGZ1
GenomeRNAi:41271 NextBio:823020 Bgee:Q9VGZ1 GermOnline:CG6345
Uniprot:Q9VGZ1
Length = 583
Score = 240 (89.5 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 69/207 (33%), Positives = 108/207 (52%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQS 307
G LL + VA+ PD +RI T+P + E+ EV+R HP V LH+P QS
Sbjct: 330 GTPFAALLRS-VAQAVPD----MRIRFTSP-HPKDFSDEVLEVIRDHPNVCKQLHLPAQS 383
Query: 308 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367
G+ VL M R Y+ + +V + + +P + +++D ICGF GET+E+F TV+LI++
Sbjct: 384 GNTQVLERMRRGYSREAYLELVQHIRQFLPNVGLSSDFICGFCGETEEEFQDTVSLIQQV 443
Query: 368 KFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELTSVF-EAFTP-YLGMEGRVERI 423
++ ++ + R T A R K VP V +R + + VF E T + MEG+ + I
Sbjct: 444 QYNVAYLFAYSMREKTTAHRRYKDDVPINVKNERLQRMVQVFREGATQLHRKMEGQEQLI 503
Query: 424 WIT-EIAADGIHLVGHTKGYVQVLVPS 449
I + H G ++V+VPS
Sbjct: 504 LIEGKSKRSDAHWFGRNDANIKVIVPS 530
Score = 95 (38.5 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 185 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY 244
FV I+ GC CTYC RG S + S+V V+ + GVKEV L ++ +Y
Sbjct: 244 FVSIMR---GCDNMCTYCIVPFTRGRERSRPLASIVAEVKALAEQGVKEVTLLGQNVNSY 300
Query: 245 GRD 247
RD
Sbjct: 301 -RD 302
Score = 73 (30.8 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP 120
++ + +GC N +D+E + L GY EEAD+ ++ T + D + ++ K
Sbjct: 94 VHFEVYGCQMNTNDTEVVFSILKENGYLRCQEPEEADVIMLVTCAVRDGAEQRIRNRLKH 153
Query: 121 L 121
L
Sbjct: 154 L 154
>UNIPROTKB|Q60CM4 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243233 "Methylococcus capsulatus str. Bath"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AE017282
GenomeReviews:AE017282_GR eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 RefSeq:YP_112621.1
ProteinModelPortal:Q60CM4 GeneID:3104493 KEGG:mca:MCA0082
PATRIC:22603887 OMA:RVDTEHM Uniprot:Q60CM4
Length = 437
Score = 305 (112.4 bits), Expect = 4.4e-25, P = 4.4e-25
Identities = 102/391 (26%), Positives = 173/391 (44%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA------- 117
+ GC DSE + QL A GYA+ ++AD+ ++NT +D + + A
Sbjct: 10 SLGCPKALVDSERIITQLRAEGYAIVPTYQDADLVVVNTCGFIDAAVEESLEAIGEAVAE 69
Query: 118 KKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 175
++V GC+ + +++ + + G + V+ V E L LH P +
Sbjct: 70 NGKVIVTGCLGERPEEIQARHPAVLKVTGAHAYEEVMNAVHEHLPP-----LHD---PFM 121
Query: 176 DL--PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
DL P+ VR + L I+ GC C++C RG L S + ++ ++A GV
Sbjct: 122 DLVPPQGVRLTPRHYAYLKISEGCNHRCSFCIIPALRGDLVSRPIGEVMTEAERLVAAGV 181
Query: 232 KEVWLSSEDTGAYGRDIGVNLPIL----LNAIVAELPP---DGSTMLRIGMTNPPFILEH 284
KE+ + S+DT AYG D+G L EL D +R+ P H
Sbjct: 182 KEILVVSQDTSAYGADLGYRTGFWGGRPLRTRFQELARALGDLGVWIRLHYVYP---YPH 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
+ E+ ++ + +L +P Q S VL AM R + + E+ P + + +
Sbjct: 239 VDEVIPLMAEGRLLPYLDIPFQHASARVLKAMKRPAATENILAAIRRWREVCPELTLRST 298
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA-ARMKKVPSAVVKKRSREL 403
I GFPGET+++F + ++ ++E + +V ++ P G A A VP+ V +R L
Sbjct: 299 FIVGFPGETEDEFRELLDFLEEARLDRVGCFEYSPVKGAAANALPDPVPAEVKAERHARL 358
Query: 404 TSVFEAFTPY-LGME-GRVERIWITEIAADG 432
V E + L GR E + + E+ +G
Sbjct: 359 MEVQERISAARLRTRIGRTETVLVDEVVEEG 389
>UNIPROTKB|F1NZV3 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY EMBL:AADN02019062 IPI:IPI00570955
ProteinModelPortal:F1NZV3 Ensembl:ENSGALT00000010897 Uniprot:F1NZV3
Length = 522
Score = 217 (81.4 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 74/223 (33%), Positives = 116/223 (52%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 305
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + LH+P
Sbjct: 272 GLRFAHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIQE--RHN-ICKQLHLPA 323
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
QSGS VL AM R YT + +V + +PG+ +++D I GF GET+ED QTV+L++
Sbjct: 324 QSGSTRVLEAMRRGYTREAYLELVQHVRNTIPGVSLSSDFIAGFCGETEEDHQQTVSLLR 383
Query: 366 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVE 421
E ++ + + R T A R++ VP+ V ++R EL +VF EA M G+ +
Sbjct: 384 EVRYNIGFLFAYSMRQKTRAYHRLQDDVPADVKQRRLEELITVFREEAARANEAMVGQSQ 443
Query: 422 RIWITEIAA-DGIHLVGHTKGYVQVLVPS--TGNMLGTSALVK 461
+ + + L G G ++V+ P T + G ALV+
Sbjct: 444 LVLVEGPSKRSASELCGRNDGNIKVIFPDADTEDAGGCKALVR 486
Score = 93 (37.8 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD 108
G +Y++T+GC N +D+E L GY T ++EAD+ L+ T S D
Sbjct: 33 GLGKVYLETYGCQMNVNDTEIAWAILQKSGYTRTKEADEADVILLVTCSVRD 84
Score = 90 (36.7 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 37/127 (29%), Positives = 58/127 (45%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
+VAG P RDL L ++ G QQ V+ ++ET + LP +
Sbjct: 136 IVAG--PDAYRDLPRLLAMAESG-QQAANVLLSLDET---------YADILP-VQTSAGG 182
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S + S++ V+ + GVKEV L ++
Sbjct: 183 KTAFVSIMR---GCDNMCSYCIVPFTRGRERSRPIASILQEVKMLSDQGVKEVTLLGQNV 239
Query: 242 GAYGRDI 248
++ RD+
Sbjct: 240 NSF-RDM 245
>ZFIN|ZDB-GENE-070424-90 [details] [associations]
symbol:zgc:162738 "zgc:162738" species:7955 "Danio
rerio" [GO:0043412 "macromolecule modification" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729
ZFIN:ZDB-GENE-070424-90 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:CR385028 EMBL:CT573268 IPI:IPI00877502
ProteinModelPortal:F1QMW8 Ensembl:ENSDART00000104111 Bgee:F1QMW8
Uniprot:F1QMW8
Length = 577
Score = 217 (81.4 bits), Expect = 8.3e-24, Sum P(3) = 8.3e-24
Identities = 56/178 (31%), Positives = 93/178 (52%)
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P +L+ ++E + + +H LH+P QSGS +L AM R YT + +V+ + +++P
Sbjct: 358 PDEVLQLIQERSNICKH------LHLPAQSGSSRILHAMRRGYTREAYLELVENIRKIIP 411
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAV 395
G+ +++D I GF ET+ED QT++L+KE + + R T A R++ VP+ V
Sbjct: 412 GVSLSSDFIAGFCSETEEDHQQTISLLKEVGYNIGFFFTYSMRKKTHAYHRLEDNVPAPV 471
Query: 396 VKKRSRELTSVFEAFTPYLGME--GRVERIWIT-EIAADGIHLVGHTKGYVQVLVPST 450
K+R EL SVF + M G + + + + L G G V+V+ P T
Sbjct: 472 KKRRLEELISVFREKATKVNMTLIGNTQLVLVEGKSKRSSEELCGRNDGNVKVIFPKT 529
Score = 100 (40.3 bits), Expect = 8.3e-24, Sum P(3) = 8.3e-24
Identities = 40/127 (31%), Positives = 61/127 (48%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
V+AG P RDL L ++ G Q+ V+ +EET +V +H+ L+
Sbjct: 191 VLAG--PDAYRDLPRLLSLAHGG-QRASNVLLSLEETYA--DVIPVHQ----TLE----G 237
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S + S+V VR + GVKE+ L ++
Sbjct: 238 HSAFVSIMR---GCDNMCSYCIVPFTRGRERSRPMSSIVEEVRMLSDQGVKEITLLGQNV 294
Query: 242 GAYGRDI 248
+Y RD+
Sbjct: 295 NSY-RDL 300
Score = 76 (31.8 bits), Expect = 8.3e-24, Sum P(3) = 8.3e-24
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y +T+GC N +D+E L GY+ T ++AD+ L+ T S
Sbjct: 92 VYFETYGCQMNTNDTEIAWSILQKAGYSRTLELQKADVVLLVTCS 136
Score = 65 (27.9 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 32/111 (28%), Positives = 44/111 (39%)
Query: 391 VPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWIT-EIAADGIHLVGHTKGYVQVLV 447
VP+ V K+R EL SVF + M G + + + + L G G V+V+
Sbjct: 467 VPAPVKKRRLEELISVFREKATKVNMTLIGNTQLVLVEGKSKRSSEELCGRNDGNVKVIF 526
Query: 448 PSTG--------NML----GTSALVKITSVGRWSVFGEVIKILNQVDDKIA 486
P T M G LVKITS S+ G + + D K A
Sbjct: 527 PKTNLPVQPEKTQMACITPGDYVLVKITSANSQSLRGHALNHSSLNDRKTA 577
>TIGR_CMR|CJE_1627 [details] [associations]
symbol:CJE_1627 "MiaB-like tRNA modifying enzyme YliG,
TIGR01125" species:195099 "Campylobacter jejuni RM1221" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR RefSeq:YP_179608.1
ProteinModelPortal:Q5HSX7 STRING:Q5HSX7 GeneID:3232255
KEGG:cjr:CJE1627 PATRIC:20045051 HOGENOM:HOG000224766
ProtClustDB:CLSK872428 BioCyc:CJEJ195099:GJC0-1657-MONOMER
GO:GO:0018339 TIGRFAMs:TIGR01125 Uniprot:Q5HSX7
Length = 439
Score = 289 (106.8 bits), Expect = 5.0e-23, P = 5.0e-23
Identities = 92/361 (25%), Positives = 172/361 (47%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTLIA 112
+Y+ + GC+ N DSE M G+LSA Y L D +AD+ ++NT + +++ ++
Sbjct: 4 LYLMSLGCNKNLVDSEIMLGRLSA--YELCDEPSKADVIIVNTCGFIDSAKKESINAILD 61
Query: 113 KCKSAKKP--LVVAGCVPQGSRD--LKELEGVSI-VGVQQIDRVVEVV-EETLKGHEVRL 166
+ KK LVV GC+ Q R+ +KEL V + GV +RV E++ ++T
Sbjct: 62 LHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDYERVDEMILKKTNLFSNSTY 121
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L + + + + F++I GC C++C +G L S + S++ ++ +
Sbjct: 122 LQSENSKRI-ITGSNSHAFIKIAE---GCNQKCSFCAIPSFKGKLKSREISSIIAELKDL 177
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHL 285
+A G K+ ++DT +Y D G ++ ++ E+ G RI P E L
Sbjct: 178 VARGYKDFSFIAQDTSSYLFDKGEKDGLI--RLIDEVEKIKGIRAARILYLYPTSASEAL 235
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
I ++ ++ +P+Q SD +L M R + + +++ L++ P + T
Sbjct: 236 --IKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLN-LMKSAPNSFLRTGF 292
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
I G PGE++ DF + +K++ F +V + + T A M++V V+ KR + +
Sbjct: 293 IVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFDMEQVSFKVINKRLKIIEK 352
Query: 406 V 406
+
Sbjct: 353 I 353
>UNIPROTKB|F1S500 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045736 "negative regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_01864 InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 EMBL:CU074412
RefSeq:XP_001928891.1 UniGene:Ssc.4299 ProteinModelPortal:F1S500
Ensembl:ENSSSCT00000007949 GeneID:100153041 KEGG:ssc:100153041
Uniprot:F1S500
Length = 589
Score = 196 (74.1 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 65/210 (30%), Positives = 107/210 (50%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 303
G+ LL+ V+++ P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 339 GLRFAHLLDQ-VSQIDPE----MRIRFTSP-----HPKDFPDEVLQLIHDRDNICKQIHL 388
Query: 304 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 363
P QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 389 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSL 448
Query: 364 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 419
++E ++ + + R T A R+K +P V +R EL +VF EA G
Sbjct: 449 LQEVQYNMGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVFREEATKANKTFVGC 508
Query: 420 VERIWITEIAA-DGIHLVGHTKGYVQVLVP 448
++ + + + L G G ++V+ P
Sbjct: 509 IQLVLVEGFSKRSSTDLCGRNDGNLKVIFP 538
Score = 99 (39.9 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 39/126 (30%), Positives = 57/126 (45%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
++AG P RDL L V+ G QQ V+ ++ET + LP P
Sbjct: 203 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVLPVQTSPSAT 250
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 251 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 306
Query: 242 GAYGRD 247
++ RD
Sbjct: 307 NSF-RD 311
Score = 88 (36.0 bits), Expect = 1.7e-22, Sum P(3) = 1.7e-22
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y++T+GC N +D+E L GY T N +EAD+ L+ T S
Sbjct: 104 VYLETYGCQMNVNDTEIAWSILQKNGYLRTSNLQEADVILLVTCS 148
Score = 51 (23.0 bits), Expect = 6.9e-07, Sum P(3) = 6.9e-07
Identities = 28/106 (26%), Positives = 45/106 (42%)
Query: 387 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGY 442
R+K +P V +R EL +VF EA G ++ + + + L G G
Sbjct: 473 RLKDDIPEEVKLRRLEELITVFREEATKANKTFVGCIQLVLVEGFSKRSSTDLCGRNDGN 532
Query: 443 VQVLVPS------TGNML------GTSALVKITSVGRWSVFGEVIK 476
++V+ P T + L G LVKITS ++ G V++
Sbjct: 533 LKVIFPDVELEDVTNSGLKVRAQPGDYVLVKITSASSQTLKGHVLR 578
>UNIPROTKB|Q2GHP3 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR005839
InterPro:IPR006467 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 282 (104.3 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 98/353 (27%), Positives = 160/353 (45%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-TQSAMDTLIAKC--KSAKKPL 121
TFGC N +SE + L L D + N + + + I K +A +
Sbjct: 6 TFGCRLNFYESEVIKNNLKKA--QLDDVIVVHSCAVTNEAERQVRSRIRKLYRDNANVKI 63
Query: 122 VVAGCVPQGSRDLK-ELEGV-SIVGVQQIDRVVEVVEETLKGHEVRL--LHRKKLPALDL 177
+VAGC Q + +L + GV ++G Q D++ E L ++ + + K D
Sbjct: 64 IVAGCAVQLNPELYVNMPGVIKVLGNQ--DKLK--YESYLAKDKIIVSKIENSKEVVQDS 119
Query: 178 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 237
K K ++ I GC CT+C ARG+ S +E ++ +V+ + +G EV +
Sbjct: 120 VKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGYNEVVFT 179
Query: 238 SEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 295
D +G DI G L ++ +++ +P LR+ + I + L I ++ P
Sbjct: 180 GVDISDFGLDIYGQRVLGTMIKRVLSAVPQ--LRRLRLSSIDVAEIEDDLINI--IINEP 235
Query: 296 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 355
LH+ +QSG++ +L M R ++ + + + DII GFP ET+E
Sbjct: 236 RFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKEVVFGADIIVGFPTETEE 295
Query: 356 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FN TV LI+E +H+ + R GTPAARM +V V K+R + L E
Sbjct: 296 MFNDTVRLIEEANISYLHVFPYSKREGTPAARMPQVVQEVKKRRVKHLLEFAE 348
>TIGR_CMR|ECH_0217 [details] [associations]
symbol:ECH_0217 "tRNA modification enzyme, MiaB family"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0016740 GO:GO:0051539
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_507040.1 ProteinModelPortal:Q2GHP3
STRING:Q2GHP3 GeneID:3927804 KEGG:ech:ECH_0217 PATRIC:20575969
ProtClustDB:CLSK749189 BioCyc:ECHA205920:GJNR-217-MONOMER
Uniprot:Q2GHP3
Length = 412
Score = 282 (104.3 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 98/353 (27%), Positives = 160/353 (45%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-TQSAMDTLIAKC--KSAKKPL 121
TFGC N +SE + L L D + N + + + I K +A +
Sbjct: 6 TFGCRLNFYESEVIKNNLKKA--QLDDVIVVHSCAVTNEAERQVRSRIRKLYRDNANVKI 63
Query: 122 VVAGCVPQGSRDLK-ELEGV-SIVGVQQIDRVVEVVEETLKGHEVRL--LHRKKLPALDL 177
+VAGC Q + +L + GV ++G Q D++ E L ++ + + K D
Sbjct: 64 IVAGCAVQLNPELYVNMPGVIKVLGNQ--DKLK--YESYLAKDKIIVSKIENSKEVVQDS 119
Query: 178 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLS 237
K K ++ I GC CT+C ARG+ S +E ++ +V+ + +G EV +
Sbjct: 120 VKGFSGKSRALIEIQNGCNHECTFCVITKARGNNRSLYIEDIITKVKACVDNGYNEVVFT 179
Query: 238 SEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 295
D +G DI G L ++ +++ +P LR+ + I + L I ++ P
Sbjct: 180 GVDISDFGLDIYGQRVLGTMIKRVLSAVPQ--LRRLRLSSIDVAEIEDDLINI--IINEP 235
Query: 296 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 355
LH+ +QSG++ +L M R ++ + + + DII GFP ET+E
Sbjct: 236 RFMPHLHLSLQSGNNLILKRMKRRHSREQVIEFCNKITSKRKEVVFGADIIVGFPTETEE 295
Query: 356 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FN TV LI+E +H+ + R GTPAARM +V V K+R + L E
Sbjct: 296 MFNDTVRLIEEANISYLHVFPYSKREGTPAARMPQVVQEVKKRRVKHLLEFAE 348
>UNIPROTKB|E2QYD7 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] HAMAP:MF_01864
InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AAEX03013894 ProteinModelPortal:E2QYD7
Ensembl:ENSCAFT00000039522 Uniprot:E2QYD7
Length = 583
Score = 198 (74.8 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 65/210 (30%), Positives = 105/210 (50%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 303
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 333 GLRFTYLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 382
Query: 304 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 363
P QSGS VL AM R Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 383 PAQSGSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSL 442
Query: 364 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 419
++E ++ + + R T A R+K VP V +R EL +VF EA + G
Sbjct: 443 LREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGS 502
Query: 420 VERIWIT-EIAADGIHLVGHTKGYVQVLVP 448
+ + + L G G ++V+ P
Sbjct: 503 TQLVLVEGHSKRSATDLCGRNDGNLKVIFP 532
Score = 95 (38.5 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 36/123 (29%), Positives = 55/123 (44%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
++AG P RDL L V+ G QQ V+ ++ET + +P P
Sbjct: 197 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMPVQTSPSAT 244
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 245 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 300
Query: 242 GAY 244
++
Sbjct: 301 NSF 303
Score = 88 (36.0 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y++T+GC N +D+E L GY T N +EAD+ L+ T S
Sbjct: 98 VYLETYGCQMNVNDTEIAWSVLQKSGYLRTRNLQEADVILLVTCS 142
Score = 48 (22.0 bits), Expect = 3.5e-06, Sum P(3) = 3.5e-06
Identities = 28/105 (26%), Positives = 41/105 (39%)
Query: 387 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGY 442
R+K VP V +R EL +VF EA + G + + + L G G
Sbjct: 467 RLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQLVLVEGHSKRSATDLCGRNDGN 526
Query: 443 VQVLVPST-----GN-------MLGTSALVKITSVGRWSVFGEVI 475
++V+ P N G LVKITS ++ G V+
Sbjct: 527 LKVIFPDVEMEDINNSDVRVRAQPGDYVLVKITSTSSQTLKGHVL 571
>TAIR|locus:2115410 [details] [associations]
symbol:AT4G36390 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009073 "aromatic amino acid
family biosynthetic process" evidence=RCA] [GO:0009691 "cytokinin
biosynthetic process" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0010155 "regulation of
proton transport" evidence=RCA] [GO:0016226 "iron-sulfur cluster
assembly" evidence=RCA] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0000079
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 GO:GO:0006400 EMBL:AL161589 EMBL:Z99708
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
EMBL:BT002022 EMBL:BT008395 IPI:IPI00522311 PIR:E85429
RefSeq:NP_195357.2 UniGene:At.27708 ProteinModelPortal:Q8H0V1
SMR:Q8H0V1 STRING:Q8H0V1 PaxDb:Q8H0V1 PRIDE:Q8H0V1
EnsemblPlants:AT4G36390.1 GeneID:829791 KEGG:ath:AT4G36390
TAIR:At4g36390 HOGENOM:HOG000224767 InParanoid:Q8H0V1 OMA:CGRTDGN
PhylomeDB:Q8H0V1 ProtClustDB:CLSN2680299 Genevestigator:Q8H0V1
GermOnline:AT4G36390 TIGRFAMs:TIGR01574 Uniprot:Q8H0V1
Length = 640
Score = 177 (67.4 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 55/206 (26%), Positives = 99/206 (48%)
Query: 246 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR--HPCVYSFLHV 303
+++G+ LL+ + E P +R T+P ++ E+ ++R H + + +H+
Sbjct: 371 KNMGLRFADLLDRLSVEFPE-----MRFRFTSP-HPKDYPDELLYLMRDRHN-ICNLIHL 423
Query: 304 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 363
P QSG+ +L M R YT + +V + ++P + I +D I GF GET+E+ +T++L
Sbjct: 424 PAQSGNSRILEQMRRGYTREAYLDLVKKIRSIIPDVAITSDFITGFCGETEEEHQETLSL 483
Query: 364 IKEYKFPQVHISQFYPRPGTPAAR--MKKVPSAVVKKRSRELTSVFEAFT-P-YLGMEGR 419
++ + ++ + R T A R VP V ++R EL F T P Y G
Sbjct: 484 VRAVGYDMAYMFAYSMREKTHAHRNYTDDVPEEVKQRRLTELIDAFRETTGPCYDSQVGS 543
Query: 420 VERIWIT--EIAADGIHLVGHT-KGY 442
+ + + A L+G T KG+
Sbjct: 544 TQLVLVEGPNKRAPETELIGKTDKGH 569
Score = 138 (53.6 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 40/157 (25%), Positives = 69/157 (43%)
Query: 99 WLINTQSAMDTLIAKCKSAKKP-LVVAGCVPQGSRDLKELEGVSIVGV-------QQIDR 150
W + + ++ + KS K P +VV GC+ + +D K L+ +V V + + R
Sbjct: 193 WFLKREWKVNAATGRAKSLKPPKVVVLGCMAERLKD-KILDSDKMVDVVCGPDAYRDLPR 251
Query: 151 VVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 210
++E V+ KG L + + ++ N + + GC C +C RG
Sbjct: 252 LLEEVDYGQKGINTLLSLEETYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGR 311
Query: 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 247
S VES++ V + GVKEV L ++ +Y D
Sbjct: 312 ERSRPVESIIREVGELWESGVKEVTLLGQNVNSYNDD 348
Score = 70 (29.7 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINT 103
+L I IY +T+GC N +D E + + GY +TD E A++ +NT
Sbjct: 120 TLDSDIASKGRIYHETYGCQMNINDMEIVLAIMKNSGYKEVVTD-PESAEVIFVNT 174
>TIGR_CMR|NSE_0785 [details] [associations]
symbol:NSE_0785 "tRNA modification enzyme, MiaB family"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
RefSeq:YP_506660.1 ProteinModelPortal:Q2GCY6 STRING:Q2GCY6
GeneID:3931918 KEGG:nse:NSE_0785 PATRIC:22681565 OMA:VITFGCR
ProtClustDB:CLSK2528053 BioCyc:NSEN222891:GHFU-796-MONOMER
Uniprot:Q2GCY6
Length = 429
Score = 280 (103.6 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 101/364 (27%), Positives = 162/364 (44%)
Query: 55 IPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADI-WLINTQSAMDTL 110
+PG +M TFGC N +S+ + + + D+ E I T A+ +
Sbjct: 6 LPGFSNKFMVKVITFGCRLNFYESDLIKNLVG-----IRDSRECIIINTCAVTNEAVRQV 60
Query: 111 ---IAKCKSAK--KPLVVAGCVPQ-GSRDLKELEGV-SIVG-VQQIDRVVEVVEETLKGH 162
I KC + K ++V GC PQ + GV ++G V+++ E+ +
Sbjct: 61 KQKIRKCHKDEPSKKIIVVGCGPQLDPHAYSRMPGVFKVLGNVEKLKAENYASEQKIAVA 120
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
++ + +P V + L I GC CT+C ARG S ++V
Sbjct: 121 DITDASETAFSSTMMPVVSAVRKRAFLEIQNGCDHDCTFCAITLARGKNRSSDAMTIVSE 180
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI-GVN-LPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR ++A G+ EV L+ D YG+D+ G L LL I+ ++P LR+ +
Sbjct: 181 VRKIVAFGINEVVLTGVDITDYGKDLFGKPALVYLLKKILNDVPE--LKRLRLSSVDVSE 238
Query: 281 ILEHLKEI-AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + E+ A R + LH+ +QSG +L M R +T ++ + P
Sbjct: 239 LSDDFIELFATEAR---LMPHLHLSIQSGDSIILKRMKRRHTPEQVVEFHSKILAVRPET 295
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
DII GFP E++E F+ + LIK P +H+ F P+ GT AA M +V V K R
Sbjct: 296 GFGADIIVGFPTESEEMFHNSYELIKRLAIPYLHVFPFSPKKGTKAALMPQVDGVVKKGR 355
Query: 400 SREL 403
+R+L
Sbjct: 356 ARKL 359
>UNIPROTKB|Q08DN3 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1" species:9913 "Bos taurus" [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_01864 InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0016740 GO:GO:0051539 GO:GO:0006400 GO:GO:0045736
eggNOG:COG0621 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 HOGENOM:HOG000224767
TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654 HOVERGEN:HBG050975
OrthoDB:EOG4SQWWK EMBL:DAAA02036431 EMBL:BC123652 IPI:IPI00694092
RefSeq:NP_001069114.1 UniGene:Bt.3262 STRING:Q08DN3
Ensembl:ENSBTAT00000024670 GeneID:514086 KEGG:bta:514086
InParanoid:Q08DN3 NextBio:20871170 Uniprot:Q08DN3
Length = 589
Score = 188 (71.2 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 52/162 (32%), Positives = 89/162 (54%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQS 307
G+ LL+ V+ + P+ +RI T+P + E+ +++R + +H+P QS
Sbjct: 339 GLRFAHLLDQ-VSRIDPE----MRIRFTSP-HPKDFPDEVLQLIRERDNICKQIHLPAQS 392
Query: 308 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367
GS VL AM R Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L++E
Sbjct: 393 GSSRVLEAMRRGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLREV 452
Query: 368 KFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 407
++ + + R T A R+K +P V +R EL +VF
Sbjct: 453 QYNIGFLFAYSMRQKTRAYHRLKDDIPEEVKLRRLEELITVF 494
Score = 99 (39.9 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 38/126 (30%), Positives = 58/126 (46%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
++AG P RDL +L V+ G QQ V+ ++ET + +P P
Sbjct: 203 ILAG--PDAYRDLPQLLAVAESG-QQAANVLLSLDET---------YADVMPVQTSPSAT 250
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 251 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 306
Query: 242 GAYGRD 247
++ RD
Sbjct: 307 NSF-RD 311
Score = 89 (36.4 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y++T+GC N +D+E L GY T N +EAD+ L+ T S
Sbjct: 104 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 148
Score = 39 (18.8 bits), Expect = 9.0e-22, Sum P(4) = 9.0e-22
Identities = 27/105 (25%), Positives = 43/105 (40%)
Query: 387 RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGY 442
R+K +P V +R EL +VF EA G + + + + L G G
Sbjct: 473 RLKDDIPEEVKLRRLEELITVFREEATKANKSFVGCTQLVLVEGPSKRSAADLCGRNDGN 532
Query: 443 VQVLVP------STGNML------GTSALVKITSVGRWSVFGEVI 475
++V+ +T + L G LVKITS ++ G V+
Sbjct: 533 LKVIFADAEMEDATDSRLRVRAQPGDYVLVKITSASSQTLKGHVL 577
>MGI|MGI:1914221 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein
1" species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0043412 "macromolecule
modification" evidence=IEA] [GO:0045736 "negative regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 MGI:MGI:1914221
GO:GO:0005737 GO:GO:0046872 GO:GO:0016740 GO:GO:0051539
GO:GO:0006400 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 EMBL:AK010097 EMBL:AK088517 EMBL:BC025132
IPI:IPI00109397 RefSeq:NP_080152.1 UniGene:Mm.289427
ProteinModelPortal:Q8BTW8 SMR:Q8BTW8 STRING:Q8BTW8
PhosphoSite:Q8BTW8 PaxDb:Q8BTW8 PRIDE:Q8BTW8
Ensembl:ENSMUST00000028990 Ensembl:ENSMUST00000109731 GeneID:66971
KEGG:mmu:66971 InParanoid:Q8BTW8 OrthoDB:EOG4SQWWK NextBio:323171
Bgee:Q8BTW8 CleanEx:MM_CDK5RAP1 Genevestigator:Q8BTW8
GermOnline:ENSMUSG00000027487 Uniprot:Q8BTW8
Length = 588
Score = 195 (73.7 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 305
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + +H+P
Sbjct: 336 GLRFSHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIRE--RHN-ICKQIHLPA 387
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET++D QTV+L++
Sbjct: 388 QSGSSRVLDAMRRGYSREAYVALVHHVRETIPGVSLSSDFITGFCGETEDDHRQTVSLLR 447
Query: 366 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 407
E ++ + + R T A R+K VP V +R EL +VF
Sbjct: 448 EVQYNTGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVF 491
Score = 92 (37.4 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 38/126 (30%), Positives = 56/126 (44%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
++AG P RDL L V G QQ V+ ++ET + +P P
Sbjct: 200 LLAG--PDAYRDLPRLLAVVESG-QQAANVLLSLDET---------YADIMPVQTSPSAT 247
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 248 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILDEVRKLSEQGLKEVTLLGQNV 303
Query: 242 GAYGRD 247
++ RD
Sbjct: 304 NSF-RD 308
Score = 89 (36.4 bits), Expect = 9.2e-22, Sum P(3) = 9.2e-22
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y++T+GC N +D+E L GY T N +EAD+ L+ T S
Sbjct: 101 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 145
>RGD|708387 [details] [associations]
symbol:Cdk5rap1 "CDK5 regulatory subunit associated protein 1"
species:10116 "Rattus norvegicus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] [GO:0007420 "brain development"
evidence=TAS] [GO:0008283 "cell proliferation" evidence=NAS]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0019887
"protein kinase regulator activity" evidence=TAS] [GO:0032403
"protein complex binding" evidence=IDA] [GO:0045664 "regulation of
neuron differentiation" evidence=TAS] [GO:0045736 "negative
regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=ISO;ISS] [GO:0045859 "regulation of protein
kinase activity" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006463
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 RGD:708387 GO:GO:0005737
GO:GO:0045664 GO:GO:0007420 GO:GO:0032403 GO:GO:0046872
GO:GO:0008283 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0019887 GO:GO:0045736 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 TIGRFAMs:TIGR00089 Pfam:PF01938
HOGENOM:HOG000224767 TIGRFAMs:TIGR01574 OMA:GIDRIRY CTD:51654
HOVERGEN:HBG050975 OrthoDB:EOG4SQWWK EMBL:AF177477 EMBL:BC066666
IPI:IPI00203631 RefSeq:NP_663773.1 UniGene:Rn.203271
ProteinModelPortal:Q9JLH6 IntAct:Q9JLH6 STRING:Q9JLH6
Ensembl:ENSRNOT00000021418 GeneID:252827 KEGG:rno:252827
InParanoid:Q9JLH6 NextBio:623881 Genevestigator:Q9JLH6
Uniprot:Q9JLH6
Length = 586
Score = 191 (72.3 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 59/164 (35%), Positives = 91/164 (55%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 305
G+ LL+ V+ + P+ +RI T+P P F E L+ I E RH + +H+P
Sbjct: 334 GLRFSHLLDQ-VSRIDPE----MRIRFTSPHPKDFPDEVLQLIRE--RHN-ICKQIHLPA 385
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET++D QTV+L++
Sbjct: 386 QSGSSRVLEAMRRGYSREAYVALVHHIREAIPGVGLSSDFITGFCGETEDDHLQTVSLLR 445
Query: 366 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 407
E ++ + + R T A R+K VP V +R EL +VF
Sbjct: 446 EVQYNTGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVF 489
Score = 96 (38.9 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 43/165 (26%), Positives = 71/165 (43%)
Query: 95 EADIWLINTQSAMDTLIAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIVG----VQ 146
E IW N + L AK ++ PL + GC+ + + L + V ++ +
Sbjct: 149 EQTIW--NRLHQLKVLKAKRPRSRVPLRIGILGCMAERLKGEILNREKMVDLLAGPDAYR 206
Query: 147 QIDRVVEVVEETLKGHEVRL----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 202
+ R++ VVE + V L + +P P + FV I+ GC C+YC
Sbjct: 207 DLPRLLAVVESGQQAANVLLSLDETYADIMPVQTSPSAT-SAFVSIMR---GCDNMCSYC 262
Query: 203 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 247
RG S V S++ VR + G+KEV L ++ ++ RD
Sbjct: 263 IVPFTRGRERSRPVASILDEVRKLSEQGLKEVTLLGQNVNSF-RD 306
Score = 89 (36.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y++T+GC N +D+E L GY T N +EAD+ L+ T S
Sbjct: 99 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 143
>UNIPROTKB|Q48FA7 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
GO:GO:0051539 EMBL:CP000058 GenomeReviews:CP000058_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:YP_275930.1 ProteinModelPortal:Q48FA7
STRING:Q48FA7 GeneID:3560255 KEGG:psp:PSPPH_3792 PATRIC:19977023
Uniprot:Q48FA7
Length = 447
Score = 278 (102.9 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 96/367 (26%), Positives = 165/367 (44%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC- 114
P + + GC DSE + QL GY + E+AD+ ++NT +DT A+
Sbjct: 7 PSAPKVGFVSLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESL 66
Query: 115 ----KSAKK--PLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRL 166
++ K+ ++V GC+ + ++++ +S+ G QQ ++VV V H+V
Sbjct: 67 EVIGEAIKENGKVIVTGCMGVDANVIRDVHPSVLSVTGPQQYEQVVNAV------HDVVP 120
Query: 167 LHRKKLPALDL--PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ P +DL P+ V+ + L I+ GC +C++C RG L S V ++
Sbjct: 121 PRKDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDE 180
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIG 274
+ ++ GVKE+ + S+DT AYG D+ G + + + L G +R+
Sbjct: 181 AKRLVKSGVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMG-VWVRLH 239
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
P H+ E+ ++ + +L +P Q S +L M R + E
Sbjct: 240 YVYP---YPHVDELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWRE 296
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VP 392
P + I + I GFPGET+EDF ++ + E + +V Q+ P G PA + VP
Sbjct: 297 QCPDLIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVP 356
Query: 393 SAVVKKR 399
V + R
Sbjct: 357 DDVKQDR 363
>UNIPROTKB|Q8EA37 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 279 (103.3 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 89/353 (25%), Positives = 165/353 (46%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP---- 120
+ GC N DSE + QL GY +T++ + AD+ ++NT +D + + A +
Sbjct: 44 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEESLDAVREALEE 103
Query: 121 ---LVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 175
++V GC+ ++E+ + + I G + V++ V + + E H +
Sbjct: 104 NGKVIVTGCLGAKENQIREVHPDVLEITGPHSYEAVLKHVHKYVPKPE----HNPFTSLI 159
Query: 176 DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 234
V+ K L I+ GC CT+C RG L S S++ + ++ GV+E+
Sbjct: 160 PQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQEI 219
Query: 235 WLSSEDTGAYGRDIGVN------LPIL--LNAIVAELPPDGSTMLRIGMTNP-PFILEHL 285
+ S+DT AYG+D G +P+ + ++ +L G+ +R+ P P++ + +
Sbjct: 220 LVVSQDTSAYGKDKGGRTDFWNGMPVKQDITSLARQLGKMGA-WVRLHYIYPYPWVDDLI 278
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+AE L P +L +P+Q S +L M R + + E+ P + I +
Sbjct: 279 PLMAEGLILP----YLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTF 334
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
I GFPGET+EDF ++ ++E + +V ++ G A + ++ S VK+
Sbjct: 335 IVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVKE 387
>TIGR_CMR|SO_4072 [details] [associations]
symbol:SO_4072 "MiaB-like putative RNA modifying enzyme
YliG" species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 OMA:RVDTEHM RefSeq:NP_719602.1
ProteinModelPortal:Q8EA37 PRIDE:Q8EA37 GeneID:1171692
KEGG:son:SO_4072 PATRIC:23527796 Uniprot:Q8EA37
Length = 481
Score = 279 (103.3 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 89/353 (25%), Positives = 165/353 (46%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP---- 120
+ GC N DSE + QL GY +T++ + AD+ ++NT +D + + A +
Sbjct: 44 SLGCPKNLVDSERILTQLRIDGYEVTNSYDNADLVIVNTCGFIDAAVEESLDAVREALEE 103
Query: 121 ---LVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 175
++V GC+ ++E+ + + I G + V++ V + + E H +
Sbjct: 104 NGKVIVTGCLGAKENQIREVHPDVLEITGPHSYEAVLKHVHKYVPKPE----HNPFTSLI 159
Query: 176 DLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 234
V+ K L I+ GC CT+C RG L S S++ + ++ GV+E+
Sbjct: 160 PQTGVKLTPKHYAYLKISEGCDNRCTFCIIPALRGDLDSRGAGSVLDEAKRLVEAGVQEI 219
Query: 235 WLSSEDTGAYGRDIGVN------LPIL--LNAIVAELPPDGSTMLRIGMTNP-PFILEHL 285
+ S+DT AYG+D G +P+ + ++ +L G+ +R+ P P++ + +
Sbjct: 220 LVVSQDTSAYGKDKGGRTDFWNGMPVKQDITSLARQLGKMGA-WVRLHYIYPYPWVDDLI 278
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+AE L P +L +P+Q S +L M R + + E+ P + I +
Sbjct: 279 PLMAEGLILP----YLDIPMQHASPRILKMMKRPGRVDRQLEAIQRWREICPDLVIRSTF 334
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
I GFPGET+EDF ++ ++E + +V ++ G A + ++ S VK+
Sbjct: 335 IVGFPGETEEDFEMLLDFLREARLDRVGCFKYSEVEGAVANTIAELISEEVKE 387
>TIGR_CMR|CJE_1086 [details] [associations]
symbol:CJE_1086 "MiaB-like tRNA modifying enzyme"
species:195099 "Campylobacter jejuni RM1221" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0016740 GO:GO:0051539
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
PIR:C81376 RefSeq:YP_179079.1 ProteinModelPortal:Q5HUF6
STRING:Q5HUF6 GeneID:3231595 KEGG:cjr:CJE1086 PATRIC:20043981
KO:K03423 OMA:GCRTNLF ProtClustDB:CLSK872324
BioCyc:CJEJ195099:GJC0-1112-MONOMER Uniprot:Q5HUF6
Length = 416
Score = 275 (101.9 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 100/402 (24%), Positives = 180/402 (44%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS-- 116
E ++ KTFGC N D+E + + Y + ++ +A I ++N+ + + + KS
Sbjct: 3 EKVFFKTFGCRTNIYDTELLKSYVK--DYEIINDENKAQIIVVNSCTVTNGADSGIKSYV 60
Query: 117 ---AKKPL--VVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
KK + ++ GC V +G L + + ++G D++ E + +E+ L+
Sbjct: 61 NTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKINEFLGAKTSFYELGNLN- 119
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
D+ N + I GC AC+YC RG S ++L+ +V + A+
Sbjct: 120 --FIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSRSVDEKALLKQVEILGAN 177
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G E+ L+ + G+YG G L LL + L G +R+G P + E
Sbjct: 178 GYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQIL---GIKRIRLGSLEPAQLDE---SFL 231
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQIATDIICG 348
E+L + LH+ +Q S+ +L M R +T +D + + +T+ G + TD I
Sbjct: 232 EILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLK-LFNTIAS--KGYALGTDFIVA 288
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV-KKRSRELTSVF 407
PGE++E + + + KE+ +H F PR T +A MK V + + K+R L S+
Sbjct: 289 HPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVINGTLAKERLNTLKSIV 348
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 449
E + +V + E DG G+ + + ++ + S
Sbjct: 349 EKNNYEFRKKNQVSLEVLVENQKDGF-FEGYDQFFNKIKIKS 389
>UNIPROTKB|Q9KNW0 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 278 (102.9 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 103/397 (25%), Positives = 174/397 (43%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTLIAKCKS 116
+ GC N DSE + QL GY + ++ ++D+ ++NT Q ++DT+ K
Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEALKE 98
Query: 117 AKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
K ++V GC+ +++++ + I G V+E V + + + H
Sbjct: 99 NGK-VIVTGCLGAREDEIRQVHPNVLGITGPHAYQNVLEHVHQ----YAPKPAHNPFTSL 153
Query: 175 LDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ V+ K L I+ GC CT+C RG L S V ++G + GVKE
Sbjct: 154 VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEAERLKNAGVKE 213
Query: 234 VWLSSEDTGAYGRDIGVNL------PILLN--AIVAELPPDGSTMLRIGMTNPPFILEHL 285
+ + S+DT AYG D +L P+ N A+ EL G +R+ P H+
Sbjct: 214 LLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMG-IWVRLHYVYP---YPHV 269
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
EI ++ V +L +P Q S VL M R + E+ P + I +
Sbjct: 270 DEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPELVIRSTF 329
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 404
I GFPGET+EDF ++ +KE + +V ++ P G A ++ ++P V + R
Sbjct: 330 IVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQDRFERFM 389
Query: 405 SVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHT 439
V + + + G ++ I E+ +G +G T
Sbjct: 390 LVQQEISAAKLQKRIGSTMQVLIDEVDEEGA--IGRT 424
>TIGR_CMR|VC_2620 [details] [associations]
symbol:VC_2620 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01865
InterPro:IPR005839 InterPro:IPR005840 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 GO:GO:0046872 GO:GO:0016740
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
PIR:H82054 RefSeq:NP_232248.1 ProteinModelPortal:Q9KNW0
PRIDE:Q9KNW0 DNASU:2615637 GeneID:2615637 KEGG:vch:VC2620
PATRIC:20084264 Uniprot:Q9KNW0
Length = 470
Score = 278 (102.9 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 103/397 (25%), Positives = 174/397 (43%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTLIAKCKS 116
+ GC N DSE + QL GY + ++ ++D+ ++NT Q ++DT+ K
Sbjct: 39 SLGCPKNLVDSERILTQLRTEGYEIVNSYHDSDVVIVNTCGFIDSAVQESLDTIGEALKE 98
Query: 117 AKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
K ++V GC+ +++++ + I G V+E V + + + H
Sbjct: 99 NGK-VIVTGCLGAREDEIRQVHPNVLGITGPHAYQNVLEHVHQ----YAPKPAHNPFTSL 153
Query: 175 LDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ V+ K L I+ GC CT+C RG L S V ++G + GVKE
Sbjct: 154 VPDHGVKLTPKHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGEIIGEAERLKNAGVKE 213
Query: 234 VWLSSEDTGAYGRDIGVNL------PILLN--AIVAELPPDGSTMLRIGMTNPPFILEHL 285
+ + S+DT AYG D +L P+ N A+ EL G +R+ P H+
Sbjct: 214 LLVISQDTSAYGVDTKHSLGFANGSPVRHNIKALSEELGKMG-IWVRLHYVYP---YPHV 269
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
EI ++ V +L +P Q S VL M R + E+ P + I +
Sbjct: 270 DEIIPLMAEGKVLPYLDIPFQHASPRVLKMMKRPGQAERTLERIKKWREICPELVIRSTF 329
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 404
I GFPGET+EDF ++ +KE + +V ++ P G A ++ ++P V + R
Sbjct: 330 IVGFPGETEEDFQILLDWLKEAQLDRVGCFKYSPVEGAAANEIEDQIPEDVKQDRFERFM 389
Query: 405 SVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHT 439
V + + + G ++ I E+ +G +G T
Sbjct: 390 LVQQEISAAKLQKRIGSTMQVLIDEVDEEGA--IGRT 424
>UNIPROTKB|P0AEI4 [details] [associations]
symbol:rimO "ribosomal protein S12 D88
methylthiotransferase" species:83333 "Escherichia coli K-12"
[GO:0009451 "RNA modification" evidence=IEA] [GO:0005575
"cellular_component" evidence=IEA] [GO:0035599 "aspartic acid
methylthiotransferase activity" evidence=IDA;IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0018339
"peptidyl-L-beta-methylthioaspartic acid biosynthetic process from
peptidyl-aspartic acid" evidence=IEA;IMP;IDA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA;IDA] [GO:0046872 "metal ion
binding" evidence=IEA] HAMAP:MF_01865 InterPro:IPR005839
InterPro:IPR005840 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 TIGRFAMs:TIGR01125 KO:K14441 PIR:C64821
RefSeq:NP_415356.1 RefSeq:YP_489108.1 ProteinModelPortal:P0AEI4
SMR:P0AEI4 DIP:DIP-48218N IntAct:P0AEI4 PRIDE:P0AEI4
EnsemblBacteria:EBESCT00000004134 EnsemblBacteria:EBESCT00000017680
GeneID:12932851 GeneID:945465 KEGG:ecj:Y75_p0808 KEGG:eco:b0835
PATRIC:32116873 EchoBASE:EB3251 EcoGene:EG13478
ProtClustDB:PRK14862 BioCyc:EcoCyc:G6435-MONOMER
BioCyc:ECOL316407:JW0819-MONOMER BioCyc:MetaCyc:G6435-MONOMER
Genevestigator:P0AEI4 GO:GO:0035599 Uniprot:P0AEI4
Length = 441
Score = 273 (101.2 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 95/401 (23%), Positives = 176/401 (43%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAK 113
K+ I + GC N DSE + +L GY + + ++AD+ ++NT +D+ + +
Sbjct: 3 KVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDDADMVIVNTCGFIDSAVQE 62
Query: 114 CKSA-------KKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEV 164
A ++V GC+ ++E+ + I G ++V+E V H V
Sbjct: 63 SLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITGPHSYEQVLEHVH-----HYV 117
Query: 165 -RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ H L + V+ + L I+ GC CT+C RG L S + ++
Sbjct: 118 PKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGEVLSE 177
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIG 274
+ ++ GVKE+ + S+DT AYG D+ G + + ++ +L G R+
Sbjct: 178 AKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTSMVSLCEQLSKLG-IWTRLH 236
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
P H+ ++ ++ + +L +P+Q S +L M R ++ + E
Sbjct: 237 YVYP---YPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMKRPGSVDRQLARIKQWRE 293
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA-ARMKKVPS 393
+ P + + + I GFPGET+EDF ++ +KE + +V ++ P G A A +VP
Sbjct: 294 ICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCFKYSPVEGADANALPDQVPE 353
Query: 394 AVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADG 432
V ++R + + + E GR + I E+ +G
Sbjct: 354 EVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDEEG 394
>UNIPROTKB|Q87Y01 [details] [associations]
symbol:rimO "Ribosomal protein S12 methylthiotransferase
RimO" species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0005737 GO:GO:0046872
GO:GO:0016740 GO:GO:0051539 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG0621
Gene3D:3.80.30.20 InterPro:IPR023404 InterPro:IPR002792
PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089 OMA:CPDITLR
HOGENOM:HOG000224766 GO:GO:0018339 TIGRFAMs:TIGR01125 KO:K14441
ProtClustDB:PRK14862 RefSeq:NP_793781.1 ProteinModelPortal:Q87Y01
GeneID:1185698 KEGG:pst:PSPTO_4019 PATRIC:19999525
BioCyc:PSYR223283:GJIX-4085-MONOMER Uniprot:Q87Y01
Length = 443
Score = 273 (101.2 bits), Expect = 4.2e-21, P = 4.2e-21
Identities = 96/360 (26%), Positives = 163/360 (45%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KSA 117
M + GC DSE + QL GY + E+AD+ ++NT +DT A+ ++
Sbjct: 10 MISLGCPKALVDSERILTQLRMEGYEVVATYEDADVVVVNTCGFIDTAKAESLEVIGEAI 69
Query: 118 KK--PLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K+ ++V GC+ + ++ + +S+ G QQ ++VV V H+V + P
Sbjct: 70 KENGKVIVTGCMGVDASVIRAVHPSVLSVTGPQQYEQVVNAV------HDVVPPRKDHNP 123
Query: 174 ALDL--PK-VRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+DL P+ V+ + L I+ GC +C++C RG L S V ++ + ++
Sbjct: 124 LIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAKRLVKS 183
Query: 230 GVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
GVKE+ + S+DT AYG D+ G + + + L G +R+ P
Sbjct: 184 GVKELLVISQDTSAYGVDVKYRTGFWDGQPVKTRMTELCQALGSMG-VWVRLHYVYP--- 239
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
H+ E+ ++ + +L +P Q S +L M R + E P + I
Sbjct: 240 YPHVDELIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPDLII 299
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKR 399
+ I GFPGET+EDF ++ + E + +V Q+ P G PA + VP V + R
Sbjct: 300 RSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVKQDR 359
>WB|WBGene00017776 [details] [associations]
symbol:F25B5.5 species:6239 "Caenorhabditis elegans"
[GO:0016740 "transferase activity" evidence=IEA] [GO:0043412
"macromolecule modification" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0005575 "cellular_component" evidence=IEA] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 170 (64.9 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 305
G+ LL VA+ PD +R T+P P F ++ ++ IA P + LH+P
Sbjct: 314 GLTFTTLLEK-VADAAPD----IRFRFTSPHPKDFPMQLIELIAS---RPNLCKQLHLPA 365
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
QSG D L M R YT + +VD + ++P + + +D I GF GET++ T++LI+
Sbjct: 366 QSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIR 425
Query: 366 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 407
++ + + R T A R+ VP V +R +LT+VF
Sbjct: 426 AVRYSFCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVF 469
Score = 101 (40.6 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 123 VAGCVPQGSR-DLKELEG-VSIVG----VQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 176
V GC+ + R DL E V+IV + + R+V V G V+L + +
Sbjct: 154 VLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGINVQLSLDETYADVQ 213
Query: 177 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 236
+V + I GC CTYC RG S +ES+V V+ + G K+V L
Sbjct: 214 PIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTL 273
Query: 237 SSEDTGAYGRDI 248
++ +Y RD+
Sbjct: 274 LGQNVNSY-RDM 284
Score = 89 (36.4 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 51 LSPK-IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD 108
L+P+ + G T+ T+GC N SD E + ++ +G+ +D E ADI L+ T S D
Sbjct: 69 LNPEDLQGNGRTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRD 128
Query: 109 TLIAKCKSAKKPLVVAGCVPQG 130
K + K L+ + V +G
Sbjct: 129 GAEKKVWNQLK-LIRSNSVNKG 149
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFG 67
D ++ + S ++PG +T+Y G
Sbjct: 288 DFSMAPSTSQEDRVPGFKTVYKPKSG 313
>UNIPROTKB|Q09316 [details] [associations]
symbol:F25B5.5 "CDK5RAP1-like protein" species:6239
"Caenorhabditis elegans" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=ISS] InterPro:IPR005839
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 GO:GO:0000079 GO:GO:0046872
GO:GO:0016740 EMBL:FO081045 GO:GO:0051539 eggNOG:COG0621
GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 HOGENOM:HOG000224767 PIR:T16145 RefSeq:NP_498290.1
ProteinModelPortal:Q09316 SMR:Q09316 STRING:Q09316 PaxDb:Q09316
EnsemblMetazoa:F25B5.5.1 EnsemblMetazoa:F25B5.5.2 GeneID:175841
KEGG:cel:CELE_F25B5.5 UCSC:F25B5.5 CTD:175841 WormBase:F25B5.5
InParanoid:Q09316 OMA:GIDRIRY NextBio:889896 Uniprot:Q09316
Length = 547
Score = 170 (64.9 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 52/164 (31%), Positives = 83/164 (50%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNP-P--FILEHLKEIAEVLRHPCVYSFLHVPV 305
G+ LL VA+ PD +R T+P P F ++ ++ IA P + LH+P
Sbjct: 314 GLTFTTLLEK-VADAAPD----IRFRFTSPHPKDFPMQLIELIAS---RPNLCKQLHLPA 365
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
QSG D L M R YT + +VD + ++P + + +D I GF GET++ T++LI+
Sbjct: 366 QSGDDETLERMERGYTRDLYLRLVDDIRHVLPSVSLTSDFIAGFCGETEQAHQNTLSLIR 425
Query: 366 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF 407
++ + + R T A R+ VP V +R +LT+VF
Sbjct: 426 AVRYSFCFVFPYSMRGKTRAHHRLTDDVPEDVKARRHLDLTTVF 469
Score = 101 (40.6 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 38/132 (28%), Positives = 58/132 (43%)
Query: 123 VAGCVPQGSR-DLKELEG-VSIVG----VQQIDRVVEVVEETLKGHEVRLLHRKKLPALD 176
V GC+ + R DL E V+IV + + R+V V G V+L + +
Sbjct: 154 VLGCMAERVRHDLLEKRNLVNIVAGPDSYRDLPRLVAVAAGGSNGINVQLSLDETYADVQ 213
Query: 177 LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 236
+V + I GC CTYC RG S +ES+V V+ + G K+V L
Sbjct: 214 PIRVDSASKTAFISIMRGCDNMCTYCVVPFTRGRERSRPIESIVEEVQRLRDQGYKQVTL 273
Query: 237 SSEDTGAYGRDI 248
++ +Y RD+
Sbjct: 274 LGQNVNSY-RDM 284
Score = 89 (36.4 bits), Expect = 5.1e-20, Sum P(3) = 5.1e-20
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 51 LSPK-IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD 108
L+P+ + G T+ T+GC N SD E + ++ +G+ +D E ADI L+ T S D
Sbjct: 69 LNPEDLQGNGRTVCYVTYGCQMNVSDMEIVRSIMTKYGFVESDKKENADIVLLMTCSIRD 128
Query: 109 TLIAKCKSAKKPLVVAGCVPQG 130
K + K L+ + V +G
Sbjct: 129 GAEKKVWNQLK-LIRSNSVNKG 149
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFG 67
D ++ + S ++PG +T+Y G
Sbjct: 288 DFSMAPSTSQEDRVPGFKTVYKPKSG 313
>DICTYBASE|DDB_G0287079 [details] [associations]
symbol:DDB_G0287079 "CDK5 regulatory
subunit-associated protein 1" species:44689 "Dictyostelium
discoideum" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0043412 "macromolecule modification"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 dictyBase:DDB_G0287079 GenomeReviews:CM000153_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 EMBL:AAFI02000096
eggNOG:COG0621 Gene3D:3.80.30.20 InterPro:IPR023404
InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451 TIGRFAMs:TIGR00089
Pfam:PF01938 RefSeq:XP_637416.1 ProteinModelPortal:Q54KV4
STRING:Q54KV4 EnsemblProtists:DDB0266584 GeneID:8625948
KEGG:ddi:DDB_G0287079 OMA:TSNLQEX ProtClustDB:CLSZ2430042
Uniprot:Q54KV4
Length = 607
Score = 207 (77.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 53/174 (30%), Positives = 94/174 (54%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQS 307
G+ L+ +V+++ P+ +RI T+P + ++ E++++ P + LH+P QS
Sbjct: 357 GITFTKLME-LVSKVDPE----IRIRFTSP-HPKDFPDDLLELIKNQPNICKQLHIPAQS 410
Query: 308 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367
GS VL +M R YT + ++DT+ ++PG I++D I GF GE+D+D N+T++L++
Sbjct: 411 GSSKVLESMRRGYTRESYIELIDTIKRVLPGCAISSDFISGFCGESDQDHNETISLMEYV 470
Query: 368 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVE 421
+ + + R T A R K K SR LT V + F L + ++E
Sbjct: 471 GYENAFMFMYSLREKTHAHRQLKDDVPTTLKNSR-LTQVVDTFYKRLKEKNQLE 523
Score = 95 (38.5 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 25 NAVGVNPKYNKNKPRLHDNH-LSKTGSLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQL 82
N + N + NK+K + + L S P G ++++T+GC N SD E + +
Sbjct: 72 NEINENNE-NKSKIETEEEYELPPYLSSLPNDKGNGRKVWIETYGCQMNVSDEEVICSIM 130
Query: 83 SAFGYALTDNSEEADIWLINTQSAMDTLIAK 113
+ GY ++++ ADI +NT S + AK
Sbjct: 131 KSSGYTISNDFNTADIVFLNTCSIRENAEAK 161
Score = 93 (37.8 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
Identities = 43/168 (25%), Positives = 75/168 (44%)
Query: 88 ALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLVVA--GCVPQGSRDLKELEG---VSI 142
++ +N+E A IWL T+ + K + L+V GC+ + ++ K LE V I
Sbjct: 153 SIRENAE-AKIWLRLTELRA----IRRKQGRPNLIVGVLGCMAERLKE-KLLESDMKVDI 206
Query: 143 VGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA----LDLPKVRR--NKFVEILPINVGCL 196
V R + + TL+ E + L A D+ VR+ N+ + I GC
Sbjct: 207 VVGPDAYRSLPSLLATLEDGEQQTAINVILSADETYADIKPVRKSDNQVSAYVSIMRGCN 266
Query: 197 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY 244
C+YC RG S ++S++ V+ + G KE+ L ++ ++
Sbjct: 267 NMCSYCIVPFTRGRERSRPIDSILREVKDLSDQGFKEITLLGQNVNSF 314
>UNIPROTKB|Q96SZ6 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0007420 "brain development" evidence=NAS]
[GO:0045664 "regulation of neuron differentiation" evidence=NAS]
[GO:0045736 "negative regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IDA] [GO:0019901
"protein kinase binding" evidence=NAS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR005839
InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0005737
EMBL:CH471077 GO:GO:0045664 GO:GO:0019901 GO:GO:0007420
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 GO:GO:0006400
GO:GO:0045736 EMBL:AL355392 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926
TIGRFAMs:TIGR00089 Pfam:PF01938 TIGRFAMs:TIGR01574 OMA:GIDRIRY
EMBL:AF152097 EMBL:AF161516 EMBL:AK023992 EMBL:AK027449
EMBL:AK292075 EMBL:BC001215 EMBL:BC050706 IPI:IPI00306312
IPI:IPI00328276 IPI:IPI00328277 IPI:IPI00328278 RefSeq:NP_057166.3
RefSeq:NP_057492.2 UniGene:Hs.435952 ProteinModelPortal:Q96SZ6
SMR:Q96SZ6 IntAct:Q96SZ6 STRING:Q96SZ6 PhosphoSite:Q96SZ6
DMDM:32129446 PaxDb:Q96SZ6 PRIDE:Q96SZ6 DNASU:51654
Ensembl:ENST00000339269 Ensembl:ENST00000346416
Ensembl:ENST00000357886 Ensembl:ENST00000452723 GeneID:51654
KEGG:hsa:51654 UCSC:uc002wyy.3 UCSC:uc002wyz.3 UCSC:uc010gek.3
UCSC:uc010gem.3 CTD:51654 GeneCards:GC20M031946 HGNC:HGNC:15880
MIM:608200 neXtProt:NX_Q96SZ6 PharmGKB:PA26313 HOVERGEN:HBG050975
InParanoid:Q96SZ6 PhylomeDB:Q96SZ6 ChiTaRS:CDK5RAP1
GenomeRNAi:51654 NextBio:55620 ArrayExpress:Q96SZ6 Bgee:Q96SZ6
CleanEx:HS_CDK5RAP1 Genevestigator:Q96SZ6
GermOnline:ENSG00000101391 Uniprot:Q96SZ6
Length = 601
Score = 192 (72.6 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 65/210 (30%), Positives = 106/210 (50%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 303
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 351 GLRFAHLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 400
Query: 304 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 363
P QSGS VL AM R Y+ + +V + E +PG+ +++D I GF GET+ED QTV+L
Sbjct: 401 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSL 460
Query: 364 IKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGR 419
++E ++ + + R T A R+K VP V +R EL ++F EA G
Sbjct: 461 LREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGC 520
Query: 420 VERIWITEIAA-DGIHLVGHTKGYVQVLVP 448
+ + + ++ L G G ++V+ P
Sbjct: 521 TQLVLVEGLSKRSATDLCGRNDGNLKVIFP 550
Score = 89 (36.4 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y++T+GC N +D+E L GY T N +EAD+ L+ T S
Sbjct: 102 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Score = 59 (25.8 bits), Expect = 5.5e-18, Sum P(3) = 5.5e-18
Identities = 28/103 (27%), Positives = 44/103 (42%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
++AG P RDL L V+ G QQ V+ ++ET + +P +
Sbjct: 201 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMP-VQTSASA 247
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ FV I+ GC C+YC RG S + S++ V+
Sbjct: 248 TSAFVSIMR---GCDNMCSYCIVPFTRGRERSRPIASILEEVK 287
>TIGR_CMR|SPO_0277 [details] [associations]
symbol:SPO_0277 "MiaB-like tRNA modifying enzyme"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] InterPro:IPR005839 InterPro:IPR006467
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278
PROSITE:PS51449 SMART:SM00729 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0016740 GO:GO:0051539
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 TIGRFAMs:TIGR01579 HOGENOM:HOG000224765
OMA:VITFGCR RefSeq:YP_165541.1 ProteinModelPortal:Q5LX67
GeneID:3196395 KEGG:sil:SPO0277 PATRIC:23373805
ProtClustDB:CLSK933203 Uniprot:Q5LX67
Length = 418
Score = 229 (85.7 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 69/257 (26%), Positives = 121/257 (47%)
Query: 194 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 253
GC CT+C + RG+ S +V +++ ++ G EV L+ D ++G D+ P
Sbjct: 146 GCDHRCTFCIIPYGRGNSRSVPAGVVVDQIKRLVDRGYNEVVLTGVDLTSWGADLPAQ-P 204
Query: 254 ILLNAI--VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 311
L + + + L PD LRI + + E+L + + P + LH+ +Q G D
Sbjct: 205 KLGDLVMRILRLVPD-LPRLRISSIDSIEVDENLMQ--GIATEPRLMPHLHLSLQHGDDL 261
Query: 312 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 371
+L M R + D + L P M DII GFP ET+ F ++ L+ +
Sbjct: 262 ILKRMKRRHLRDDAIRFAEEARRLRPEMTFGADIIAGFPTETEAHFENSLKLVDDCHLTW 321
Query: 372 VHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTP-YLGME-GRVERIWITEI 428
+H+ + R GTPAA++ +V ++K+R+ L + + +L + GR RI +
Sbjct: 322 LHVFPYSRREGTPAAKIPSQVNGKIIKERAARLRAAGDRRVALHLAEQVGRSHRILM--- 378
Query: 429 AADGIHLVGHTKGYVQV 445
+ H+ G T+ + +V
Sbjct: 379 --ESPHM-GRTEQFTEV 392
>TIGR_CMR|SPO_0944 [details] [associations]
symbol:SPO_0944 "RNA modification enzyme, MiaB-family"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0009451 "RNA modification"
evidence=ISS] HAMAP:MF_01865 InterPro:IPR005839 InterPro:IPR005840
InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0046872 GO:GO:0016740 GO:GO:0051539 Gene3D:2.40.50.140
InterPro:IPR012340 eggNOG:COG0621 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 OMA:CPDITLR HOGENOM:HOG000224766 GO:GO:0018339
TIGRFAMs:TIGR01125 KO:K14441 ProtClustDB:PRK14862
RefSeq:YP_166197.1 ProteinModelPortal:Q5LUV8 GeneID:3196011
KEGG:sil:SPO0944 PATRIC:23375173 Uniprot:Q5LUV8
Length = 466
Score = 229 (85.7 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 96/419 (22%), Positives = 180/419 (42%)
Query: 36 NKPRLHDN--HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
N P L + ++ G+ + + PG TI M + GC DSE + +L A GY ++ +
Sbjct: 7 NPPNLRPDLAPAARLGTAATR-PGQPTIGMVSLGCPKALVDSERILTRLRAEGYGISPDY 65
Query: 94 EEADIWLINTQSAMDTLIAKCKSA-----KK--PLVVAGCVPQGSRDLKELEG--VSIVG 144
AD ++NT +D+ A+ A K+ ++V GC+ ++E +++ G
Sbjct: 66 AGADAVIVNTCGFLDSAKAESLDAIGEALKENGKVIVTGCLGAEPDYIREHHPRILAVTG 125
Query: 145 VQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKT 204
Q ++V++ V + + LPA + R+ L I+ GC C +C
Sbjct: 126 PHQYEQVLDAVHGAVPPDPDPFVDL--LPASGVQLTPRH--YSYLKISEGCNHKCKFCII 181
Query: 205 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN----AIV 260
RG L S +++ ++ +GVKE+ + S+DT AYG D + + N + +
Sbjct: 182 PDMRGKLASRPAHAVLREAEKLVDNGVKELLIISQDTSAYGLDRKYDTNLWKNREVRSHI 241
Query: 261 AELPPD-GS--TMLRIGMTNPPFILEHLKEIAEVLRHP-C-VYSFLHVPVQSGSDAVLSA 315
+L + G +R+ P H++E+ ++ C + +L +P Q L
Sbjct: 242 TDLARELGQLDAWVRLHYVYP---YPHVRELIPLMADAGCNLLPYLDIPFQHAHPDTLKR 298
Query: 316 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375
M R + + E+ P + + + I G+PGET+ +F ++ + E + +V
Sbjct: 299 MARPAAAARTLDEIAAWREICPEITLRSTFIVGYPGETEAEFQTLLDWMDEAQLDRVGCF 358
Query: 376 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIW-ITEIAADGI 433
Q+ G AR +P V + +E F A + R+ + E+ D +
Sbjct: 359 QYENVAG---ARSNDLPDHVPAEVKQERWDRFMAKAQAISEAKLAARVGQVIEVIVDEV 414
>UNIPROTKB|E2RIW1 [details] [associations]
symbol:CDK5RAP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
InterPro:IPR005839 InterPro:IPR006638 InterPro:IPR007197
InterPro:IPR013848 InterPro:IPR020612 Pfam:PF00919 Pfam:PF04055
PROSITE:PS01278 PROSITE:PS51449 SMART:SM00729 GO:GO:0016740
GO:GO:0051539 GeneTree:ENSGT00530000063447 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
TIGRFAMs:TIGR00089 Pfam:PF01938 EMBL:AAEX03013894
Ensembl:ENSCAFT00000011867 Uniprot:E2RIW1
Length = 583
Score = 160 (61.4 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 56/208 (26%), Positives = 97/208 (46%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV--- 305
G+ LL+ V+ + P+ +RI T+P H K+ + + V F H+ V
Sbjct: 335 GLRFTYLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIVLEFKHIFVCSL 384
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
SG + + Y+ + ++ + E +PG+ +++D I GF GET+ED QTV+L++
Sbjct: 385 TSGLTCIAEIRLKGYSREAYVELIHHIRESIPGVSLSSDFIAGFCGETEEDHLQTVSLLR 444
Query: 366 EYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVE 421
E ++ + + R T A R+K VP V +R EL +VF EA + G +
Sbjct: 445 EVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITVFREEATKANMASVGSTQ 504
Query: 422 RIWIT-EIAADGIHLVGHTKGYVQVLVP 448
+ + L G G ++V+ P
Sbjct: 505 LVLVEGHSKRSATDLCGRNDGNLKVIFP 532
Score = 95 (38.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 36/123 (29%), Positives = 55/123 (44%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
++AG P RDL L V+ G QQ V+ ++ET + +P P
Sbjct: 199 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMPVQTSPSAT 246
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S V S++ VR + G+KEV L ++
Sbjct: 247 -SAFVSIMR---GCDNMCSYCIVPFTRGRERSRPVASILEEVRKLSEQGLKEVTLLGQNV 302
Query: 242 GAY 244
++
Sbjct: 303 NSF 305
>RGD|1310246 [details] [associations]
symbol:Cdkal1 "CDK5 regulatory subunit associated protein 1-like
1" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR013848 Pfam:PF00919
PROSITE:PS51449 RGD:1310246 GO:GO:0003824 GO:GO:0051539
GO:GO:0009451 OrthoDB:EOG4RJG1D IPI:IPI00947777
Ensembl:ENSRNOT00000066308 UCSC:RGD:1310246 ArrayExpress:D3ZGD9
Uniprot:D3ZGD9
Length = 133
Score = 148 (57.2 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 1 MEDIEDLLXXXXXXXXXXXFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ F + V PK + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRHF----SRKHVFPKVRRRNTQKYLQEEPSPPSDST-IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
I+++T+GCSHN SD EYMAGQL+A+GY +T ++ W
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITAQCGKSQAW 103
>UNIPROTKB|Q675N4 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit associated protein
1 transcript variant 4" species:9606 "Homo sapiens" [GO:0009451
"RNA modification" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR005839 InterPro:IPR006638
InterPro:IPR007197 InterPro:IPR013848 InterPro:IPR020612
Pfam:PF00919 Pfam:PF04055 PROSITE:PS01278 PROSITE:PS51449
SMART:SM00729 GO:GO:0016740 GO:GO:0051539 EMBL:AL355392
Gene3D:3.80.30.20 InterPro:IPR023404 GO:GO:0009451
TIGRFAMs:TIGR00089 UniGene:Hs.435952 HGNC:HGNC:15880
HOVERGEN:HBG050975 ChiTaRS:CDK5RAP1 EMBL:AY462284 IPI:IPI01014266
SMR:Q675N4 STRING:Q675N4 Ensembl:ENST00000544843 Uniprot:Q675N4
Length = 426
Score = 89 (36.4 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS 105
+Y++T+GC N +D+E L GY T N +EAD+ L+ T S
Sbjct: 102 VYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCS 146
Score = 87 (35.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 38/139 (27%), Positives = 62/139 (44%)
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR 181
++AG P RDL L V+ G QQ V+ ++ET + +P +
Sbjct: 201 ILAG--PDAYRDLPRLLAVAESG-QQAANVLLSLDET---------YADVMP-VQTSASA 247
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDT 241
+ FV I+ GC C+YC RG S + S++ V+ + G+KEV L ++
Sbjct: 248 TSAFVSIMR---GCDNMCSYCIVPFTRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNV 304
Query: 242 GAYGRDIGVNLPILLNAIV 260
++ RD N + N+ V
Sbjct: 305 NSF-RD---NSEVQFNSAV 319
Score = 75 (31.5 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 30/94 (31%), Positives = 47/94 (50%)
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA-EVLR--HPC--VYSFLHV 303
G+ LL+ V+ + P+ +RI T+P H K+ EVL+ H + +H+
Sbjct: 337 GLRFAHLLDQ-VSRVDPE----MRIRFTSP-----HPKDFPDEVLQLIHERDNICKQIHL 386
Query: 304 PVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P QSGS VL AM R Y+ + +V + E +P
Sbjct: 387 PAQSGSSRVLEAMRRGYSREAYVELVHHIRESIP 420
>UNIPROTKB|H0Y721 [details] [associations]
symbol:CDK5RAP1 "CDK5 regulatory subunit-associated protein
1" species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006638 InterPro:IPR013848 PROSITE:PS51449 SMART:SM00729
GO:GO:0003824 GO:GO:0051539 EMBL:AL355392 Gene3D:3.80.30.20
InterPro:IPR023404 InterPro:IPR002792 PROSITE:PS50926 GO:GO:0009451
Pfam:PF01938 HGNC:HGNC:15880 ChiTaRS:CDK5RAP1
ProteinModelPortal:H0Y721 PRIDE:H0Y721 Ensembl:ENST00000427097
Bgee:H0Y721 Uniprot:H0Y721
Length = 256
Score = 143 (55.4 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 45/151 (29%), Positives = 77/151 (50%)
Query: 303 VPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 362
+PVQ+ + A SA Y+ + +V + E +PG+ +++D I GF GET+ED QTV+
Sbjct: 58 MPVQTSASAT-SAF--VYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVS 114
Query: 363 LIKEYKFPQVHISQFYPRPGTPAA-RMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEG 418
L++E ++ + + R T A R+K VP V +R EL ++F EA G
Sbjct: 115 LLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVG 174
Query: 419 RVERIWITEIAA-DGIHLVGHTKGYVQVLVP 448
+ + + ++ L G G ++V+ P
Sbjct: 175 CTQLVLVEGLSKRSATDLCGRNDGNLKVIFP 205
>UNIPROTKB|Q74FM0 [details] [associations]
symbol:yhcC-2 "Radical SAM domain iron-sulfur
cluster-binding oxidoreductase, TIGR01212 family" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 KO:K07139 InterPro:IPR005911 TIGRFAMs:TIGR01212
HOGENOM:HOG000027269 RefSeq:NP_951644.1 ProteinModelPortal:Q74FM0
GeneID:2685847 KEGG:gsu:GSU0586 PATRIC:22023921 OMA:HLIYGFP
ProtClustDB:CLSK2306727 BioCyc:GSUL243231:GH27-562-MONOMER
Uniprot:Q74FM0
Length = 319
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
LE L ++A+ H Y + + +QS DA+L +NR +TL ++ VD + G+ +
Sbjct: 136 LELLADLAQ--EH---YVCIELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIAL 188
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388
T +I GFPGET E F +T +L+ V + Q + GT A +
Sbjct: 189 CTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAEL 235
>TIGR_CMR|GSU_0586 [details] [associations]
symbol:GSU_0586 "radical SAM protein, TIGR01212 family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR006638 InterPro:IPR007197 Pfam:PF04055
SMART:SM00729 GO:GO:0003824 GO:GO:0008152 GO:GO:0051536
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:3.80.30.20
InterPro:IPR023404 KO:K07139 InterPro:IPR005911 TIGRFAMs:TIGR01212
HOGENOM:HOG000027269 RefSeq:NP_951644.1 ProteinModelPortal:Q74FM0
GeneID:2685847 KEGG:gsu:GSU0586 PATRIC:22023921 OMA:HLIYGFP
ProtClustDB:CLSK2306727 BioCyc:GSUL243231:GH27-562-MONOMER
Uniprot:Q74FM0
Length = 319
Score = 130 (50.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
LE L ++A+ H Y + + +QS DA+L +NR +TL ++ VD + G+ +
Sbjct: 136 LELLADLAQ--EH---YVCIELGLQSMDDAILERINRGHTLDEYLRTVDRIAGR--GIAL 188
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388
T +I GFPGET E F +T +L+ V + Q + GT A +
Sbjct: 189 CTHLIYGFPGETREGFLKTAHLLAGLPVDSVKLHQLHAVKGTRLAEL 235
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 622 595 0.00084 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 77
No. of states in DFA: 624 (66 KB)
Total size of DFA: 323 KB (2164 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 48.33u 0.07s 48.40t Elapsed: 00:00:03
Total cpu time: 48.35u 0.07s 48.42t Elapsed: 00:00:03
Start: Sat May 11 10:11:01 2013 End: Sat May 11 10:11:04 2013