BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007001
(622 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255561612|ref|XP_002521816.1| radical sam protein, putative [Ricinus communis]
gi|223539029|gb|EEF40626.1| radical sam protein, putative [Ricinus communis]
Length = 630
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/633 (77%), Positives = 537/633 (84%), Gaps = 14/633 (2%)
Query: 1 MEDIEDLL-AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNH-LSKTGSL-SPKIPG 57
MEDIEDLL GGGAPPGFRLP+N+VGV PK K + + NH +S + SL SPKIPG
Sbjct: 1 MEDIEDLLIGSGSGGGAPPGFRLPLNSVGVYPKKIIKKNKGYLNHGISLSQSLLSPKIPG 60
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTL 110
T+TIY+KTFGCSHNQSDSEYMAGQLS+FGYALTD E+ D+WLINT QSAMDT+
Sbjct: 61 TQTIYIKTFGCSHNQSDSEYMAGQLSSFGYALTDIPEDGDLWLINTCTVKSPSQSAMDTI 120
Query: 111 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
IAK KSAKKPLVVAGCVPQGSR+LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 121 IAKGKSAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLTRK 180
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
LPALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRVRTV+ DG
Sbjct: 181 TLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVRTVVGDG 240
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
VKE+WLSSEDTGAYGRDIGVNLP LLNAIV+ELP D STMLRIGMTNPPFILEHLKEIAE
Sbjct: 241 VKEIWLSSEDTGAYGRDIGVNLPRLLNAIVSELPADASTMLRIGMTNPPFILEHLKEIAE 300
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
VLRHPCVYSFLHVPVQSGSD VL+AMNREYT+S+FRTVVDTL ELVPGMQIATDIICGFP
Sbjct: 301 VLRHPCVYSFLHVPVQSGSDNVLNAMNREYTVSNFRTVVDTLTELVPGMQIATDIICGFP 360
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
GETD+DF QTV+LI EYK PQVHISQFYPRPGTPAARMKKVPS +VKKRSRELT+VFEAF
Sbjct: 361 GETDDDFAQTVSLINEYKLPQVHISQFYPRPGTPAARMKKVPSNIVKKRSRELTAVFEAF 420
Query: 411 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 470
TPY GMEGRVERIWITEIA DGIHLVGHTKGYVQVLV + MLGTSA+VKITSVGRWSV
Sbjct: 421 TPYNGMEGRVERIWITEIATDGIHLVGHTKGYVQVLVIAPETMLGTSAIVKITSVGRWSV 480
Query: 471 FGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKI 530
FGEVI+ LNQ + +AS ++ S K S CS E+ ACS EP+ ACG E C G+
Sbjct: 481 FGEVIQTLNQTNRGVASAEKMPS---GGKYSPCSDPCETCACSKEPESCACGPESCGGQN 537
Query: 531 TLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL-KGVENDVALGSKKKQEWMGGNMGEW 589
LEE ++ D ED N +N+IGWLLRKRKNQ K VEN++AL S KKQEW G W
Sbjct: 538 PLEESAIAQNDMLLEDRNRRNLIGWLLRKRKNQTQKIVENNIALESIKKQEWTKGTFSMW 597
Query: 590 GVVDRALLGGMLVSFLIILALLIHVGFRTLSTK 622
G VDRALLGGMLVS + I+ALL+H+GFRT STK
Sbjct: 598 GAVDRALLGGMLVSLVTIVALLLHLGFRTTSTK 630
>gi|359493166|ref|XP_002268292.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Vitis vinifera]
Length = 622
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/630 (74%), Positives = 527/630 (83%), Gaps = 24/630 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G GGAPPGFRLP+ +VG PK NKNKP L K+ IPGT+T
Sbjct: 1 MEDIEDLLVGNGVGGAPPGFRLPLASVGFKPKQNKNKPNLE----KKSHIQDYIIPGTQT 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IYMKTFGCSHNQSDSEYMAGQL+AFGY L+DN EEAD+WLINT QSAMDTLI K
Sbjct: 57 IYMKTFGCSHNQSDSEYMAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITK 116
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+S+KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 117 GRSSKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 176
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE
Sbjct: 177 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKE 236
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+WLSSEDTGAYGRDIGV LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLR
Sbjct: 237 IWLSSEDTGAYGRDIGVTLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLR 296
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
HPCVYSFLHVPVQSGSDA+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 297 HPCVYSFLHVPVQSGSDAILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGET 356
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 413
DE+F QTV+LI+EY+FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+FEAFTPY
Sbjct: 357 DEEFAQTVSLIQEYRFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPY 416
Query: 414 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
GMEGRVERIWI+EIA DGIHLVGHTKGY+QVLV + +++GTSA+VKITSVGRWSVFGE
Sbjct: 417 NGMEGRVERIWISEIATDGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGE 476
Query: 474 VIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLE 533
+I+ LNQV+D I+ N + KCS CS E ACS E +P AC + CEGKI++E
Sbjct: 477 LIETLNQVNDNISLNEE---KFSLGKCSPCSVPGEICACSREAEPCACEPQSCEGKISME 533
Query: 534 EGQVSWIDRFAEDINSQNVIGWLLRKRKNQ-LKGVENDVALGSKKKQEWMGGNMGEWGVV 592
EG VS D E+ QN+ WLLR+RKN K +EN +A GSK+K+E G M WG+V
Sbjct: 534 EGSVSRKDMLPEN---QNLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGCMNHWGLV 590
Query: 593 DRALLGGML------VSFLIILALLIHVGF 616
DR LLGG+ S+++ + + V F
Sbjct: 591 DRVLLGGIFGILQRDCSYMLFHYIHLEVSF 620
>gi|224135639|ref|XP_002327268.1| predicted protein [Populus trichocarpa]
gi|222835638|gb|EEE74073.1| predicted protein [Populus trichocarpa]
Length = 612
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/630 (75%), Positives = 538/630 (85%), Gaps = 26/630 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIEDLL G+G G +PPGFRLP+NAVGVN K NKNKP+LH LS+T +S KIPGT
Sbjct: 1 MEDIEDLLVGNGSG-SPPGFRLPLNAVGVNLKKNKNKPKLHAKQLSET-PISSKIPGT-- 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
QSDSEYMAGQLS+FGY+L+D+ EEAD+WLINT QSAMDTLI+K
Sbjct: 57 -----------QSDSEYMAGQLSSFGYSLSDSPEEADLWLINTCTVKSPSQSAMDTLISK 105
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
KSAKKPLVVAGCVPQGSR++KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LP
Sbjct: 106 GKSAKKPLVVAGCVPQGSRNVKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLP 165
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
ALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV+SL GRV+TVI DGVKE
Sbjct: 166 ALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLAGRVKTVIDDGVKE 225
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+WLSSEDTGAYGRDIGVNLPILLNAIVAELP DGSTMLRIGMTNPPFILEHLKEIAEVLR
Sbjct: 226 IWLSSEDTGAYGRDIGVNLPILLNAIVAELPSDGSTMLRIGMTNPPFILEHLKEIAEVLR 285
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
HPCVYSFLHVPVQSGSDA+L+AMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGET
Sbjct: 286 HPCVYSFLHVPVQSGSDAILTAMNREYTVNEFRTVVDTLTELVPGMQIATDIICGFPGET 345
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 413
D+DF+QTVNLIK YKF QVHISQFYPRPGTPAARMKKVPS +VK+RSRELTSVFEAFTPY
Sbjct: 346 DKDFSQTVNLIKAYKFAQVHISQFYPRPGTPAARMKKVPSNIVKQRSRELTSVFEAFTPY 405
Query: 414 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
GMEGRVERIWIT+IAADGIHLVGHTK YVQVL+ + +MLGTSA+VKITSVGRWSVFGE
Sbjct: 406 NGMEGRVERIWITDIAADGIHLVGHTKAYVQVLIVAQESMLGTSAIVKITSVGRWSVFGE 465
Query: 474 VIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLE 533
VI+ LNQ++ K ++ + + ++KCS CS +S ACS E +P ACG E C G+ T+E
Sbjct: 466 VIETLNQINQK---SKSVEKMLSEEKCSPCSDPCDSCACSGESEPCACGPESCGGQSTIE 522
Query: 534 EGQVSWIDRFAEDINSQNVIGWLLRKRKNQL-KGVENDVALGSKKKQEWMGGNMGEWGVV 592
+ V + ED N +N+IGWLLRKRKNQ K VEN +A GS+KKQEW G EWGVV
Sbjct: 523 QSDVLQNEVLREDQNRRNLIGWLLRKRKNQAQKMVENGIASGSQKKQEWAKGAPEEWGVV 582
Query: 593 DRALLGGMLVSFLIILALLIHVGFRTLSTK 622
DRALLGG++VS +A+LIH+GF+T+S+K
Sbjct: 583 DRALLGGLIVSVFTTVAILIHLGFKTMSSK 612
>gi|449447617|ref|XP_004141564.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 905 bits (2338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/637 (72%), Positives = 523/637 (82%), Gaps = 20/637 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLPI AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPITAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINT QSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVRRVRSVI 239
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+GV+E+WLSSEDTGAYGRDIGVNLPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVNLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGETDEDF +T+NLIKEY PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSVF
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVF 419
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
EAFTPY GMEGRVERIWITEIAADGIHLVGHTKGY+QVLV + MLGTSA VKITS+GR
Sbjct: 420 EAFTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIAPETMLGTSATVKITSIGR 479
Query: 468 WSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCE 527
WSVFGEVI+I++ K + + + QDK S CS+ +E+ ACS EP+ ACGLE C+
Sbjct: 480 WSVFGEVIEIISTKHHKTTT---LEDTLTQDKVSPCSNTHETCACSTEPESCACGLESCK 536
Query: 528 GKITL-EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL--KGVENDVALGSKKKQEWMGG 584
G + + +E S E+ +N+I W+LR+RK+ + K E + + +++KQ GG
Sbjct: 537 GAVAVGDEVNSSRNVPSPEEPKRKNLIEWVLRRRKSHVLPKREETENPIVTERKQTLAGG 596
Query: 585 NMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 621
+ EWGVVD+ L+GG+L+S I LL H+G T S+
Sbjct: 597 RLDEWGVVDKILVGGILISTFTIFGLLFHLGSTTFSS 633
>gi|449506818|ref|XP_004162857.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Cucumis sativus]
Length = 635
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/637 (72%), Positives = 523/637 (82%), Gaps = 20/637 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKY-NKNKPRLHDNHLSKTGS-----LSPK 54
MEDIEDLL G GGG P G+RLP+ AVGV PK N K + S S L PK
Sbjct: 1 MEDIEDLLIGGGGGAPP-GYRLPLTAVGVKPKKKNMFKSNASADDSSNEPSPIQNPLVPK 59
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGY L+DN E+AD+WLINT QSAM
Sbjct: 60 IPGTQTIYVKTFGCSHNQSDSEYMAGQLSAFGYLLSDNPEDADLWLINTCTVKSPSQSAM 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
DTLI KCK+AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 120 DTLITKCKNAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 179
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+RK LPALDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RVR+VI
Sbjct: 180 NRKTLPALDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTLDSLVRRVRSVI 239
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+GV+E+WLSSEDTGAYGRDIGV LPILLNAIV+ELP D STMLRIGMTNPPFILEHLKE
Sbjct: 240 NEGVREIWLSSEDTGAYGRDIGVTLPILLNAIVSELPSDASTMLRIGMTNPPFILEHLKE 299
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
IA+VL HPCVYSFLHVPVQSGSDA+LSAMNREYT+S+FRTVVDTL ELVPGMQIATDIIC
Sbjct: 300 IAKVLSHPCVYSFLHVPVQSGSDAILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIIC 359
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGETDEDF +T+NLIKEY PQVHISQFYPRPGTPAARMKKVPSA+VKKRSRELTSVF
Sbjct: 360 GFPGETDEDFCETINLIKEYNLPQVHISQFYPRPGTPAARMKKVPSAIVKKRSRELTSVF 419
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
EAFTPY GMEGRVERIWITEIAADGIHLVGHTKGY+QVLV ++ MLGTSA VKITS+GR
Sbjct: 420 EAFTPYNGMEGRVERIWITEIAADGIHLVGHTKGYIQVLVIASETMLGTSATVKITSIGR 479
Query: 468 WSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCE 527
WSVFGEVIKI++ K + + + QDK S CS+ +E+ ACS EP+ ACGLE C+
Sbjct: 480 WSVFGEVIKIISTKHHKTTT---LEDTLTQDKVSPCSNTHETCACSTEPESCACGLESCK 536
Query: 528 GKITL-EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQL--KGVENDVALGSKKKQEWMGG 584
G + + ++ S E+ +N+I W+LR+RK+ + K E + + +++KQ GG
Sbjct: 537 GAVAVGDKVNSSRNIPSPEEPKRKNLIEWVLRRRKSHVLPKREETENPIVTERKQTLAGG 596
Query: 585 NMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 621
+ EWGVVD+ L+GG+L+S I LL H+G T S+
Sbjct: 597 RLDEWGVVDKILVGGILISTFTIFGLLFHLGSTTFSS 633
>gi|356542899|ref|XP_003539902.1| PREDICTED: CDKAL1-like protein-like [Glycine max]
Length = 609
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/627 (70%), Positives = 516/627 (82%), Gaps = 29/627 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINA-VGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTE 59
MEDIEDLL GS PPGFRLP+ A VGV K N+ S + S SP IPGT+
Sbjct: 1 MEDIEDLLIGSA---TPPGFRLPLAAAVGVGTKRNQLS--------SSSLSPSPAIPGTQ 49
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
TI++KTFGCSHNQSDSEYMAGQLSAFGY+L+D+ + AD+WLINT QSAMDT+I+
Sbjct: 50 TIFIKTFGCSHNQSDSEYMAGQLSAFGYSLSDDPDHADLWLINTCTVKSPSQSAMDTIIS 109
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K KS+ KPLVVAGCVPQGSRDLKELEG+SIVGVQQIDRVVE+VEETLKGHEVRLL RKKL
Sbjct: 110 KGKSSNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKKL 169
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
PALDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLVGRV++VI++GVK
Sbjct: 170 PALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISEGVK 229
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+WLSSEDTGAYGRDIGVNLP LLNA+VAELP D STMLRIGMTNPP+ILEHLKEIAE+L
Sbjct: 230 EIWLSSEDTGAYGRDIGVNLPTLLNALVAELPADASTMLRIGMTNPPYILEHLKEIAEIL 289
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
RHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIATDIICGFPGE
Sbjct: 290 RHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIATDIICGFPGE 349
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
TDEDF QT+NLIKEYK PQVHISQFYPRPGTPAARMKKVPS VVK+RSRELT+VFE+FTP
Sbjct: 350 TDEDFLQTINLIKEYKLPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFESFTP 409
Query: 413 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 472
Y GMEG+VERIWIT+IA+DG+HLVGHTKGY+QVLV + NMLGTSA+VKITSVGRWSVFG
Sbjct: 410 YSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAMVKITSVGRWSVFG 469
Query: 473 EVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITL 532
+VI+ +N V D A N+ + +Q C + ++ S EP+ ACG + C G+ TL
Sbjct: 470 DVIETVNPVSDNKALNKLVPNQ-------DCGNSAKTGGFSEEPEYCACGNDICCGQGTL 522
Query: 533 EEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMGEWGVV 592
E S ++ + +N IGW+LRKR++ K VE+++A GS KKQE G M +W V
Sbjct: 523 ENNDNSRGSAVPQNQSKRNFIGWMLRKREHLHKTVESELASGSVKKQE---GIMRKWDFV 579
Query: 593 DRALLGGMLVSFLIILALLIHVGFRTL 619
D+ LLGG+ +S L I+AL++ V FR +
Sbjct: 580 DKVLLGGISISILTIMALVVAVMFRVI 606
>gi|296081133|emb|CBI18159.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/553 (75%), Positives = 469/553 (84%), Gaps = 20/553 (3%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQG 130
MAGQL+AFGY L+DN EEAD+WLINT QSAMDTLI K +S+KKPLVVAGCVPQG
Sbjct: 1 MAGQLAAFGYVLSDNPEEADLWLINTCTVKSPSQSAMDTLITKGRSSKKPLVVAGCVPQG 60
Query: 131 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 190
SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL+RK LPALDLPKVR+NKFVEILP
Sbjct: 61 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLNRKTLPALDLPKVRKNKFVEILP 120
Query: 191 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 250
INVGCLGACTYCKTKHARGHLGSYTV+SLVGRVRTVIADGVKE+WLSSEDTGAYGRDIGV
Sbjct: 121 INVGCLGACTYCKTKHARGHLGSYTVDSLVGRVRTVIADGVKEIWLSSEDTGAYGRDIGV 180
Query: 251 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 310
LPILLNAIV+ELPPDG TMLRIGMTNPP+ILEHLKE+A VLRHPCVYSFLHVPVQSGSD
Sbjct: 181 TLPILLNAIVSELPPDGGTMLRIGMTNPPYILEHLKEMAVVLRHPCVYSFLHVPVQSGSD 240
Query: 311 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370
A+LSAMNREYT+++FRTVVDTL ELVPGMQIATDIICGFPGETDE+F QTV+LI+EY+FP
Sbjct: 241 AILSAMNREYTVTEFRTVVDTLTELVPGMQIATDIICGFPGETDEEFAQTVSLIQEYRFP 300
Query: 371 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA 430
QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS+FEAFTPY GMEGRVERIWI+EIA
Sbjct: 301 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSIFEAFTPYNGMEGRVERIWISEIAT 360
Query: 431 DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRR 490
DGIHLVGHTKGY+QVLV + +++GTSA+VKITSVGRWSVFGE+I+ LNQV+D I+ N
Sbjct: 361 DGIHLVGHTKGYMQVLVVAPRSLMGTSAIVKITSVGRWSVFGELIETLNQVNDNISLN-- 418
Query: 491 ISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQ 550
+ KCS CS E ACS E +P AC + CEGKI++EEG VS D E+ Q
Sbjct: 419 -EEKFSLGKCSPCSVPGEICACSREAEPCACEPQSCEGKISMEEGSVSRKDMLPEN---Q 474
Query: 551 NVIGWLLRKRKNQ-LKGVENDVALGSKKKQEWMGGNMGEWGVVDRALLGGML------VS 603
N+ WLLR+RKN K +EN +A GSK+K+E G M WG+VDR LLGG+ S
Sbjct: 475 NLFKWLLRRRKNHGQKRIENGIAWGSKEKEERDRGCMNHWGLVDRVLLGGIFGILQRDCS 534
Query: 604 FLIILALLIHVGF 616
+++ + + V F
Sbjct: 535 YMLFHYIHLEVSF 547
>gi|297839059|ref|XP_002887411.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333252|gb|EFH63670.1| radical SAM domain-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 602
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/640 (68%), Positives = 492/640 (76%), Gaps = 62/640 (9%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNH----LSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RVSSKQDQITASNRDSLAPPSL 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSA 106
KIPGT+TIY+KTFGCSHNQSDSEYMAGQL+AFGYALT+ E+AD+WLINT QSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLTAFGYALTEVPEDADLWLINTCTVKSPSQSA 118
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETDEDF+QTV LIK+YKF QVHISQFYPRPGTPAA+MKKV S +VK+RSR+LTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFSQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRDLTSV 418
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
FEAF PY GMEGR ERIWITEIA DGIHLVGHTKGYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMEGREERIWITEIATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 467 RWSVFGEVIKILNQVDDKIASNRRISSQVR-QDKCSSCSSQNESSACSNEPDPSACGLEC 525
RWSVFGEVI+ + ++NR S+ + CSS S E+ CS E +CG E
Sbjct: 479 RWSVFGEVIETFS------SANRETKSREETKPPCSSNVSSCETCTCSAE----SCGEE- 527
Query: 526 CEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWM--- 582
R E N I R++ KG S+K++ M
Sbjct: 528 ----------------RSGEACNISGNIS-----RQDDQKG-------KSEKQETEMREV 559
Query: 583 ---GGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 619
G ++ WG +D+AL+ G+ VS L IL LLI + R L
Sbjct: 560 VVPGSSVANWGFIDKALVCGVFVSSLTILVLLISIASRVL 599
>gi|18409989|ref|NP_565035.1| Methylthiotransferase [Arabidopsis thaliana]
gi|12322201|gb|AAG51137.1|AC069273_8 unknown protein [Arabidopsis thaliana]
gi|14194137|gb|AAK56263.1|AF367274_1 At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|27363418|gb|AAO11628.1| At1g72090/F28P5_4 [Arabidopsis thaliana]
gi|332197151|gb|AEE35272.1| Methylthiotransferase [Arabidopsis thaliana]
Length = 601
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/635 (68%), Positives = 489/635 (77%), Gaps = 52/635 (8%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN----HLSKTGSLSP--- 53
MEDIEDLLAG GG P GFRLP+NAVG+NPK NK+K R+ S SL+P
Sbjct: 1 MEDIEDLLAGGVGGAPP-GFRLPLNAVGINPKTNKSK-RISSKPDQITASNRDSLAPPSM 58
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSA 106
KIPGT+TIY+KTFGCSHNQSDSEYMAGQLSAFGYALT+ EEAD+WLINT QSA
Sbjct: 59 KIPGTQTIYIKTFGCSHNQSDSEYMAGQLSAFGYALTEVPEEADLWLINTCTVKSPSQSA 118
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
M TLI + +S KKPLV+AGCVPQGSRDLKELEGVS+VGVQQIDRVVE+VEETLKGHEVRL
Sbjct: 119 MSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGVQQIDRVVEIVEETLKGHEVRL 178
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L RK LPALDLPKVRRN F+EILPINVGCLGACTYCKTKHARGHLGSYTV+SLV RVRTV
Sbjct: 179 LTRKTLPALDLPKVRRNNFIEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVERVRTV 238
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
I++GVKE+WLSSEDTGAYGRDIGVNLPILLNAIV ELP D STMLRIGMTNPPFILEHLK
Sbjct: 239 ISEGVKEIWLSSEDTGAYGRDIGVNLPILLNAIVKELPSDQSTMLRIGMTNPPFILEHLK 298
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
EIA VLRHPCVY+FLHVPVQSGSD+VL+AMNREYT S+FRTVVDTL ELVPGMQIATDII
Sbjct: 299 EIAAVLRHPCVYTFLHVPVQSGSDSVLTAMNREYTASEFRTVVDTLTELVPGMQIATDII 358
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETDEDF+QTV LIK+YKFPQVHISQFYPRPGTPAA+MKKV S +VK+RSRELTSV
Sbjct: 359 CGFPGETDEDFSQTVELIKDYKFPQVHISQFYPRPGTPAAKMKKVQSKIVKQRSRELTSV 418
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
FEAF PY GME R ERIWITE+A DGIHLVGHTKGYVQVLV +MLGTSA+ +ITSVG
Sbjct: 419 FEAFAPYTGMECREERIWITEVATDGIHLVGHTKGYVQVLVTGPESMLGTSAMARITSVG 478
Query: 467 RWSVFGEVIKILNQVDDKIASNRRISSQVRQD-KCSSCSSQNESSACSNEPDPSACGLEC 525
RWSVFGEVI+ + ++NR S+ CSS S E+ CS E +CG E
Sbjct: 479 RWSVFGEVIETFS------SANRETKSREETKLPCSSNVSTCETCTCSAE----SCGEE- 527
Query: 526 CEGKITLEEGQVSWIDRFAEDIN-SQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGG 584
R E N S N+ G ++ KG ++ G
Sbjct: 528 ----------------RSGEACNISGNISG------QDDNKGKSKKEEKEVQEVVV-PGS 564
Query: 585 NMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 619
++ WG +D+AL+ G+ VS + IL LLI + R L
Sbjct: 565 SVANWGFIDKALVCGVFVSSVTILVLLISIACRVL 599
>gi|357111240|ref|XP_003557422.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Brachypodium distachyon]
Length = 624
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/650 (64%), Positives = 481/650 (74%), Gaps = 61/650 (9%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
MEDIED+L AG GGGAPPG RLP++ V V PK + RL +IPGT
Sbjct: 1 MEDIEDVLGPAGFSGGGAPPGLRLPLSTVAVKPK--RRSSRLAQTQQQPEA----RIPGT 54
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINT QSAM TLI
Sbjct: 55 QTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLI 114
Query: 112 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
+KCK+A KPLVVAGCVPQGSRDLKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL RK
Sbjct: 115 SKCKNANKPLVVAGCVPQGSRDLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLLSRKT 174
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSY+++ LV RV+ V+++GV
Sbjct: 175 LPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYSIDGLVDRVKIVVSEGV 234
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
+E+WLSSEDTGAYGRDIG NLP LL+AIVAELP D STMLRIGMTNPPFILEHL EIA V
Sbjct: 235 REIWLSSEDTGAYGRDIGTNLPNLLSAIVAELPADRSTMLRIGMTNPPFILEHLNEIASV 294
Query: 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
LRHPCVY+FLHVPVQSGSDAVL AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPG
Sbjct: 295 LRHPCVYTFLHVPVQSGSDAVLKAMNREYTVSEFRMVVDTLCELVPGMQIATDIICGFPG 354
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT 411
ETDEDF QTV LIKEYK PQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVFEAF+
Sbjct: 355 ETDEDFAQTVKLIKEYKLPQVHISQFYPRPGTPAARMKKVPSIEVKKRSRELTSVFEAFS 414
Query: 412 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 471
PY G+EG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVGRWSVF
Sbjct: 415 PYQGLEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSANVKITSVGRWSVF 474
Query: 472 GEVI-------KILNQ----VDDKIASNRRISSQVRQDKCSSCS---SQNESSAC----S 513
GEVI ++L Q ++ N + + C SC+ ++N + C S
Sbjct: 475 GEVIEGSIAAKEVLKQNPAEAQEEYRENHAEEATCSTNSCGSCACSGAENVAQQCGPHRS 534
Query: 514 NEPD--PSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDV 571
+P P+ CG CE E Q + + R E +K E+D
Sbjct: 535 EDPSDAPTDCGDATCE-----EAAQYTLVRRNVE----------------RTMKTRESDT 573
Query: 572 ALGSKKKQEWMGGNMGEWGV--VDRALLGGMLVSFLIILALLIHVGFRTL 619
K Q+ N+ V +DR L G+ VSF LAL + + ++
Sbjct: 574 GKPVVKDQQV---NLANRRVINIDRILWVGLAVSFATTLALFVLLSYKIF 620
>gi|242075846|ref|XP_002447859.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
gi|241939042|gb|EES12187.1| hypothetical protein SORBIDRAFT_06g017040 [Sorghum bicolor]
Length = 623
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/643 (65%), Positives = 487/643 (75%), Gaps = 45/643 (6%)
Query: 1 MEDIEDLL--AGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L A GGGAPPG RLP+ AV V PK S+ P +
Sbjct: 1 MEDIEDVLGPADLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAR 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINT QSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 110
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
++GV+E+WLSSEDTGAYGRDI NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDISTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+++FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVAEFRKVVDTLYELVPGMQIATDIIC 350
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSVF 410
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
E F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + ++LGTSA VKITSVGR
Sbjct: 411 ELFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSLLGTSANVKITSVGR 470
Query: 468 WSVFGEVIK---ILNQVDDKIAS---NRRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 521
WSVFGEVI+ ++ + + ++ I +QV + C + S + ACSNE C
Sbjct: 471 WSVFGEVIEGSVVVGEAPKQTSAKLQKEHIQNQVEEAGCCATDSCG-TCACSNEAQ--QC 527
Query: 522 GLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKR--KNQLKGVENDVALGSKKKQ 579
E CE S D+ Q + L +R + KG ++ A K+Q
Sbjct: 528 SPERCE--------DTSHAPETCGDVTRQEALQPTLVRRSVEGTTKGSKSSAAHSLGKEQ 579
Query: 580 EWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 621
+ + GV +D L G+ VSF + +ALL+ + + ST
Sbjct: 580 QVK--VVTRRGVNIDTILWCGLAVSFAVTIALLVILTSKISST 620
>gi|38345374|emb|CAD40910.2| OSJNBa0088K19.13 [Oryza sativa Japonica Group]
Length = 626
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/648 (64%), Positives = 477/648 (73%), Gaps = 54/648 (8%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T+ E AD+WLINT QSAM
Sbjct: 54 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 113
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 114 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 173
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 174 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 233
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 234 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 293
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 294 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 353
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 354 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVF 413
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
E+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVGR
Sbjct: 414 ESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGR 473
Query: 468 WSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSNE 515
WSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 474 WSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPG 533
Query: 516 PDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGS 575
P+ S G T +E S + R R + +K E+D A
Sbjct: 534 PERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA--- 575
Query: 576 KKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 621
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 576 KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 623
>gi|194693708|gb|ACF80938.1| unknown [Zea mays]
gi|413918351|gb|AFW58283.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 626
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/643 (64%), Positives = 484/643 (75%), Gaps = 42/643 (6%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINT QSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
IA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDIIC
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDIIC 350
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 351 GFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSVF 410
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
E+F+PY GMEG+VE+IWITEIA+DG+HLVGHTKGY+QVLV + +MLGTSA KITSVGR
Sbjct: 411 ESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVGR 470
Query: 468 WSVFGEVIK-ILNQVDDKIASN-----RRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 521
WSVFG V++ + ++ I ++ + +QV + C + S + ACSNE P C
Sbjct: 471 WSVFGVVVEGSVAVIEAPIQTSAELQEEHVQNQVEEAGCCATDSCG-ACACSNEAQP--C 527
Query: 522 GLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRK--NQLKGVENDVALGSKKKQ 579
G + C L Q D Q + L +R KG ++ A + K+Q
Sbjct: 528 GPDRCGD--ALRAPQTCGGDVVT---TRQEALQPTLVRRSVDGTTKGSDSTAAHSAGKEQ 582
Query: 580 EWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 621
+ GV +D L G+ SF + +ALL + + LST
Sbjct: 583 RVE--VVTRRGVDIDTVLWCGLAASFAVTVALLALLTSKILST 623
>gi|115458480|ref|NP_001052840.1| Os04g0434300 [Oryza sativa Japonica Group]
gi|113564411|dbj|BAF14754.1| Os04g0434300, partial [Oryza sativa Japonica Group]
Length = 621
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/627 (64%), Positives = 466/627 (74%), Gaps = 52/627 (8%)
Query: 20 FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----KIPGTETIYMKTFGCSHNQSDS 75
RLP+ AV V PK +PR S+ P +IPGT+TIY+KTFGCSHNQSDS
Sbjct: 19 LRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEARIPGTQTIYVKTFGCSHNQSDS 69
Query: 76 EYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVP 128
EYM+GQLSAFGYA+T+ E AD+WLINT QSAM TLI+KCKSA KPLVVAGCVP
Sbjct: 70 EYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANKPLVVAGCVP 129
Query: 129 QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEI 188
QGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL RK LP+LDLPKVR+NKF+EI
Sbjct: 130 QGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPKVRKNKFIEI 189
Query: 189 LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI 248
LPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+++GV+E+WLSSEDTGAYGRDI
Sbjct: 190 LPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSEDTGAYGRDI 249
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 308
G NLP LLN I AELP D STMLRIGMTNPPFILEHLKEIA VL HPCVYSFLHVPVQSG
Sbjct: 250 GTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYSFLHVPVQSG 309
Query: 309 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368
SDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y
Sbjct: 310 SDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYL 369
Query: 369 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 428
FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVFE+F+PY GMEG+VERIWITEI
Sbjct: 370 FPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEI 429
Query: 429 AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI------KILNQVD 482
A DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVGRWSVFGEVI K + +
Sbjct: 430 ATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEGSVVAKETQKHN 489
Query: 483 DKIASNRRISSQVRQ------DKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQ 536
SQV + D C +C+ + + C+ P+ S G T +E
Sbjct: 490 HSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPGPERSENSTPQSCGDATHQEAV 549
Query: 537 VSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMG--EWGVVDR 594
S + R R + +K E+D A K+ E N+ + VD
Sbjct: 550 QSKLVR---------------RNVEGAVKSSESDTA---KQVGEIQRLNVAARRFPDVDT 591
Query: 595 ALLGGMLVSFLIILALLIHVGFRTLST 621
L GG+ VSF + L+ + ++ ST
Sbjct: 592 ILWGGLAVSFATTVTLIALLAYKISST 618
>gi|218194881|gb|EEC77308.1| hypothetical protein OsI_15965 [Oryza sativa Indica Group]
Length = 629
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/643 (64%), Positives = 482/643 (74%), Gaps = 41/643 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV + PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVALKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQ---SDSEYMAGQLSAFGYALTDNSEEADIWLINT-------Q 104
IPGT+TIY+KTFGCSHNQ SDSEYM+GQLSAFGYA+T+ E AD+WLINT Q
Sbjct: 54 IPGTQTIYVKTFGCSHNQASFSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQ 113
Query: 105 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 164
SAM TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEV
Sbjct: 114 SAMTTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEV 173
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
RLL RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+
Sbjct: 174 RLLSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVK 233
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
V+++GV+E+WLSSEDTGAYGRDIG NLP LLN IVAELP D STMLRIGMTNPPFILEH
Sbjct: 234 IVVSEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIVAELPADRSTMLRIGMTNPPFILEH 293
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
LKEIA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATD
Sbjct: 294 LKEIASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATD 353
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
IICGFPGETDEDF+QTVNL+K+Y+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELT
Sbjct: 354 IICGFPGETDEDFSQTVNLVKQYQFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELT 413
Query: 405 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
SVFE+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITS
Sbjct: 414 SVFESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITS 473
Query: 465 VGRWSVFGEVIK---ILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 521
VGRWSVFGEVI+ + + S + + Q + ++C + AC+ S
Sbjct: 474 VGRWSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSFGACTC----SDA 529
Query: 522 GLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKR-KNQLKGVENDVALGSKKKQE 580
+C G E + S + + + V L+R+ + +K E+D A K+ E
Sbjct: 530 AQQCNPGP---ERSENSTPQSCGDATHQEAVQSKLVRRNVEGAVKSSESDTA---KQVGE 583
Query: 581 WMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 621
N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 584 IQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 626
>gi|356523570|ref|XP_003530410.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Glycine max]
Length = 518
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/516 (71%), Positives = 429/516 (83%), Gaps = 14/516 (2%)
Query: 104 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 163
QSAMDT+I K KS+ KPLVVAGCVPQGSRDLKEL+G+SIVGVQQI RVVE+VEETLKGHE
Sbjct: 14 QSAMDTIITKGKSSNKPLVVAGCVPQGSRDLKELQGISIVGVQQIHRVVEIVEETLKGHE 73
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
VRLL RKKLP LDLPKVR+NKFVEILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV
Sbjct: 74 VRLLTRKKLPTLDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVRRV 133
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++VI++GV E+WLSSEDTGA GRDIGVN P LLNA+VAELP D STMLRIGMTNPP+ILE
Sbjct: 134 KSVISEGVXEIWLSSEDTGASGRDIGVNPPTLLNALVAELPADASTMLRIGMTNPPYILE 193
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HLK IAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVVDTL ELVP MQIAT
Sbjct: 194 HLKXIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPEMQIAT 253
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 403
DIIC FPGETDEDF QTVNLI+EYKFPQVHISQFYPRPGTPAARMKKVPS VVK+RSREL
Sbjct: 254 DIICRFPGETDEDFVQTVNLIEEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSREL 313
Query: 404 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
T VFE+FTPY GMEG+VERIWIT+IA+DG+HLVGHTKGY+QVLV + NMLGTSA+VKIT
Sbjct: 314 TXVFESFTPYSGMEGKVERIWITDIASDGVHLVGHTKGYIQVLVLAPDNMLGTSAVVKIT 373
Query: 464 SVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSACGL 523
SVGRWSVFGE+ + +N D A N+ + +Q C S + ES AC N+
Sbjct: 374 SVGRWSVFGEIFETINHASDNKALNKLVPNQDLSSLCGGFSEEQESCACGNDI------- 426
Query: 524 ECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMG 583
CC + TLE+ S R +++ + +N IGW+LRKR + K VE+++A GS KKQE
Sbjct: 427 -CCGQEGTLEKSDNS---RGSQNQSKRNFIGWMLRKRGHLHKTVESELASGSVKKQE--- 479
Query: 584 GNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 619
G+M +W +VD+ LLGG+ +S L I+AL++ V FR +
Sbjct: 480 GSMRKWDLVDKVLLGGISISILTIMALVVAVMFRVI 515
>gi|222628903|gb|EEE61035.1| hypothetical protein OsJ_14875 [Oryza sativa Japonica Group]
Length = 613
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/648 (62%), Positives = 464/648 (71%), Gaps = 67/648 (10%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINT QSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
++GV+E+WLSSEDTGAYGRDIG NLP LLN I AELP D STMLRIGMTNPPFILEHLKE
Sbjct: 221 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKE 280
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
IA VL HPCVYSFLHVPVQSGSDAVL+AMNREYT+S+FR VVDTL ELVPGMQIATDIIC
Sbjct: 281 IASVLCHPCVYSFLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIIC 340
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGETDEDF+QTVNL+K+Y FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSVF
Sbjct: 341 GFPGETDEDFSQTVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVF 400
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
E+F+PY GMEG+VERIWITEIA DG+HLVGHTKGY+QVLV + +MLGTSA VKITSVGR
Sbjct: 401 ESFSPYQGMEGKVERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGR 460
Query: 468 WSVFGEVI------KILNQVDDKIASNRRISSQVRQ------DKCSSCSSQNESSACSNE 515
WSVFGEVI K + + SQV + D C +C+ + + C+
Sbjct: 461 WSVFGEVIEGSVVAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPG 520
Query: 516 PDPSACGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGS 575
P+ S G T +E S + R R + +K E+D A
Sbjct: 521 PERSENSTPQSCGDATHQEAVQSKLVR---------------RNVEGAVKSSESDTA--- 562
Query: 576 KKKQEWMGGNMG--EWGVVDRALLGGMLVSFLIILALLIHVGFRTLST 621
K+ E N+ + VD L GG+ VSF + L+ + ++ ST
Sbjct: 563 KQVGEIQRLNVAARRFPDVDTILWGGLAVSFATTVTLIALLAYKISST 610
>gi|168060037|ref|XP_001782005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666496|gb|EDQ53148.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 489
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/496 (66%), Positives = 390/496 (78%), Gaps = 27/496 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLP-------------INAVGVNPKYNKNKPRLHDNHLSK 47
MEDIED++ GG AP G LP NAV + P+ R+ + K
Sbjct: 1 MEDIEDMIGDFGG--APLGLHLPKTDSTSGSGRRNGTNAVTIKPRR-----RISAHSGGK 53
Query: 48 TGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---- 103
S + +T+Y+KTFGCSHNQSDSEYMAGQLS +GY++TD + AD+WLINT
Sbjct: 54 ESIDSVVLVAMQTVYLKTFGCSHNQSDSEYMAGQLSDYGYSVTDAPDGADLWLINTCTVK 113
Query: 104 ---QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 160
QSAM+ LI K K A KPLVVAGCVPQG ++LK+LEGVS+VGVQQIDRVVEVVEETLK
Sbjct: 114 NPSQSAMENLIRKGKDAGKPLVVAGCVPQGDKNLKDLEGVSVVGVQQIDRVVEVVEETLK 173
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
GHEVRLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSY + SLV
Sbjct: 174 GHEVRLLRRSSLPSLDLPKVRKNKFVEIVPINVGCLGACTYCKTKHARGHLGSYPLASLV 233
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
RV+ V+A+GVKE+WLSSEDTGAYG D+G +LP LLNA+V LP D S MLRIGMTNPP+
Sbjct: 234 DRVKGVVAEGVKEIWLSSEDTGAYGIDLGTDLPTLLNALVDVLPKDRSCMLRIGMTNPPY 293
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
IL+HL+ IA +L HPCVYSFLHVPVQSGSD VL AMNREYT+SDF+ V DTL+ LVP +
Sbjct: 294 ILKHLESIAAILNHPCVYSFLHVPVQSGSDNVLCAMNREYTVSDFKKVADTLLRLVPDLH 353
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ATDIICGFPGET EDF T+ L+KEYKF Q+HISQFYPRPGTPAARMK+VP+A VKKRS
Sbjct: 354 LATDIICGFPGETSEDFEATMALVKEYKFSQLHISQFYPRPGTPAARMKRVPTAEVKKRS 413
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
RELT++FE+F PY GMEG+ +R+W+T++A+DG+HLVGH K YVQVL+P ++G+S V
Sbjct: 414 RELTTLFESFNPYSGMEGKEQRVWVTDVASDGVHLVGHNKSYVQVLLPEAEGLMGSSVDV 473
Query: 461 KITSVGRWSVFGEVIK 476
KI SV RWSV GEV+K
Sbjct: 474 KIISVNRWSVMGEVLK 489
>gi|223944159|gb|ACN26163.1| unknown [Zea mays]
gi|413918349|gb|AFW58281.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 517
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/524 (66%), Positives = 407/524 (77%), Gaps = 19/524 (3%)
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
M TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRL
Sbjct: 1 MTTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRL 60
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV
Sbjct: 61 LSRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTV 120
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLK
Sbjct: 121 VSEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLK 180
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
EIA VL HPCVYSFLHVPVQSGSD+VL AMNREYT+ +FR VVDTL ELVPGMQIATDII
Sbjct: 181 EIAAVLCHPCVYSFLHVPVQSGSDSVLKAMNREYTVGEFRKVVDTLCELVPGMQIATDII 240
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETDEDF++TVNL+KEY+FPQVHISQFYPRPGTPAARMKKVPS VKKRSRELTSV
Sbjct: 241 CGFPGETDEDFSETVNLVKEYQFPQVHISQFYPRPGTPAARMKKVPSNEVKKRSRELTSV 300
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
FE+F+PY GMEG+VE+IWITEIA+DG+HLVGHTKGY+QVLV + +MLGTSA KITSVG
Sbjct: 301 FESFSPYQGMEGKVEKIWITEIASDGVHLVGHTKGYIQVLVTAPDSMLGTSADAKITSVG 360
Query: 467 RWSVFGEVIK-ILNQVDDKIASN-----RRISSQVRQDKCSSCSSQNESSACSNEPDPSA 520
RWSVFG V++ + ++ I ++ + +QV + C + S + ACSNE P
Sbjct: 361 RWSVFGVVVEGSVAVIEAPIQTSAELQEEHVQNQVEEAGCCATDSCG-ACACSNEAQP-- 417
Query: 521 CGLECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRK--NQLKGVENDVALGSKKK 578
CG + C L Q D Q + L +R KG ++ A + K+
Sbjct: 418 CGPDRCGD--ALRAPQTCGGDVVT---TRQEALQPTLVRRSVDGTTKGSDSTAAHSAGKE 472
Query: 579 QEWMGGNMGEWGV-VDRALLGGMLVSFLIILALLIHVGFRTLST 621
Q + GV +D L G+ SF + +ALL + + LST
Sbjct: 473 QRVE--VVTRRGVDIDTVLWCGLAASFAVTVALLALLTSKILST 514
>gi|302772983|ref|XP_002969909.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
gi|300162420|gb|EFJ29033.1| hypothetical protein SELMODRAFT_31574 [Selaginella moellendorffii]
Length = 421
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/421 (73%), Positives = 368/421 (87%), Gaps = 7/421 (1%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINT QSAM+TLI
Sbjct: 1 TIFLKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+WLSSEDTGAYGRDIG ++P LL A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGSDIPTLLRALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
RHPCVYSFLHVPVQSGSD+VL AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLEAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
T ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LTS+FE+FTP
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTSLFESFTP 360
Query: 413 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 472
Y MEG+V R+W+T+ AADGIHLVGHTK YVQVL+PS +LG++ KITSVGRWSV
Sbjct: 361 YSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSLPGLLGSNVNCKITSVGRWSVKA 420
Query: 473 E 473
E
Sbjct: 421 E 421
>gi|302799254|ref|XP_002981386.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
gi|300150926|gb|EFJ17574.1| hypothetical protein SELMODRAFT_52269 [Selaginella moellendorffii]
Length = 421
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/421 (73%), Positives = 370/421 (87%), Gaps = 7/421 (1%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
TI++KTFGC+HNQSDSEYMAGQL A+GY ++++ +EAD+WLINT QSAM+TLI
Sbjct: 1 TIFVKTFGCAHNQSDSEYMAGQLLAYGYKISEDPDEADLWLINTCTVKAPSQSAMETLIR 60
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K K+ PLV+AGCVPQGS+DLK+LEGVS+VGVQQI RVVEVVEETLKGHEV+LL R L
Sbjct: 61 KGKAQTIPLVIAGCVPQGSKDLKDLEGVSVVGVQQIQRVVEVVEETLKGHEVKLLRRSTL 120
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P+LDLPKVR+NKFVEI+PINVGCLG+CTYCKTKHARGHLGSY +E+LV R++ V+++GV
Sbjct: 121 PSLDLPKVRKNKFVEIIPINVGCLGSCTYCKTKHARGHLGSYKIEALVKRLQGVVSEGVT 180
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+WLSSEDTGAYGRDIG ++P LL+A+VAELP D S MLRIGMTNPP+IL+HLKEIAE+L
Sbjct: 181 EIWLSSEDTGAYGRDIGTDIPTLLHALVAELPRDRSVMLRIGMTNPPYILQHLKEIAEIL 240
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
RHPCVYSFLHVPVQSGSD+VL+AM REYT+++F+ V DTLIELVP + IATDIICGFPGE
Sbjct: 241 RHPCVYSFLHVPVQSGSDSVLAAMKREYTVAEFKQVADTLIELVPDIHIATDIICGFPGE 300
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
T ++F++T+ LI+ YKFPQVHISQFYPRPGTPAARMK+VP+A VKKRSR LT++FE+FTP
Sbjct: 301 TSDEFDKTMELIEHYKFPQVHISQFYPRPGTPAARMKRVPTAEVKKRSRLLTNLFESFTP 360
Query: 413 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 472
Y MEG+V R+W+T+ AADGIHLVGHTK YVQVL+PS +LG++ KITSVGRWSV
Sbjct: 361 YSDMEGKVYRVWVTDTAADGIHLVGHTKSYVQVLLPSLPGLLGSNVNCKITSVGRWSVKA 420
Query: 473 E 473
E
Sbjct: 421 E 421
>gi|145344300|ref|XP_001416674.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576900|gb|ABO94967.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 516
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 265/442 (59%), Positives = 339/442 (76%), Gaps = 12/442 (2%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMD 108
PGT I++ TFGCSHN SDSE+MAGQL +GY L D E+AD WL+NT QSAM+
Sbjct: 35 PGTAKIFVHTFGCSHNHSDSEFMAGQLRRYGYELVDAPEKADGWLVNTCTVKNPSQSAMN 94
Query: 109 TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 168
T+I + K+A K +V+AGCVPQG + KEL VS++GV QIDRVVE +E TL G VR+L
Sbjct: 95 TVIERGKAANKAMVIAGCVPQGDKGAKELRDVSLLGVTQIDRVVEAMERTLAGDTVRMLE 154
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
+K LP+LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV +A
Sbjct: 155 KKALPSLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAMA 214
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+GV EVWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +
Sbjct: 215 EGVSEVWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAV 274
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
AE +RHP VY+++H+PVQSGS+AVL M REYT+ +F+ V DTL+ VPGM IATDIICG
Sbjct: 275 AEAMRHPSVYAWMHIPVQSGSNAVLEGMKREYTVEEFKRVCDTLLAAVPGMVIATDIICG 334
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FPGETDE + +T++LI+EYKFP+VHISQFYPRPGTPAA+MK+VP+ +VK RSRELT++FE
Sbjct: 335 FPGETDEQWQETMSLIEEYKFPEVHISQFYPRPGTPAAKMKRVPTQIVKARSRELTALFE 394
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKITS 464
++ P+ + G+ ER+W+++IA DG LV HTK Y Q+L+P ++G SA+V+I
Sbjct: 395 SYMPHEHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPGGEDQRARLMGRSAMVEIYE 454
Query: 465 VGRWSVFGEVIKILNQVDDKIA 486
RWS V+++L +VD +A
Sbjct: 455 AARWSCKARVLEVL-EVDPTVA 475
>gi|308801795|ref|XP_003078211.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
gi|116056662|emb|CAL52951.1| CDK5 activator-binding protein (ISS) [Ostreococcus tauri]
Length = 558
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 269/493 (54%), Positives = 356/493 (72%), Gaps = 38/493 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I++ TFGCSHN SDSE+MAGQL ++GY L ++ +AD WL+NT QSAM+T++ +
Sbjct: 35 IFVHTFGCSHNHSDSEFMAGQLQSYGYELVKDASDADGWLVNTCTVKNPSQSAMNTVLER 94
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K+A K L+VAGCVPQG + KEL+ VS++GV QIDRVVE +E TL G VR+L +K LP
Sbjct: 95 GKAANKALLVAGCVPQGDKGAKELKDVSLLGVTQIDRVVEAMERTLAGDTVRMLEKKTLP 154
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
LDLPKVRRN+FVEILP++ GCLGACTYCKTKHARG LGSY + +LV RV I++GV E
Sbjct: 155 RLDLPKVRRNEFVEILPLSTGCLGACTYCKTKHARGDLGSYEISALVSRVEQAISEGVSE 214
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
VWLSSEDTGAYG D+G ++ L AI A LP DGS MLR+GMTNPP+IL HL +AE +R
Sbjct: 215 VWLSSEDTGAYGIDLGTDVAALFRAITAVLPTDGSVMLRLGMTNPPYILAHLDAVAEAMR 274
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
HP VY+++H+PVQSGS+AVL AM REYT+ +FRTV DTL+E VPGM IATD+ICGFPGET
Sbjct: 275 HPAVYAWMHIPVQSGSNAVLEAMKREYTVEEFRTVCDTLLEAVPGMVIATDVICGFPGET 334
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 413
DE + +T+ LI+EYKFP+VHISQFYPRPGTPAARMK+VP+ +VK RSRELT +FE++ P+
Sbjct: 335 DEQWRETMQLIEEYKFPEVHISQFYPRPGTPAARMKRVPTQIVKGRSRELTVLFESYQPH 394
Query: 414 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKITSVGRWS 469
+ G+ ER+W+++IA DG LV HTK Y Q+L+P +++G SA+V+I RWS
Sbjct: 395 QHLVGKTERVWVSDIARDGTSLVAHTKNYTQILLPGGEDQRAHLMGRSAMVEIYESSRWS 454
Query: 470 VFGEVIKILN--------------------QVDDKIASNRRI----SSQVRQDKCSSCSS 505
V+++++ + +K+ +R+ + ++ + CS C S
Sbjct: 455 CKARVLEVIDADPTVARVRLSVIPSEEESKMIREKLTKGKRVRIKKAQEMPETGCSVCGS 514
Query: 506 QNESSACSNEPDP 518
S+C + +P
Sbjct: 515 D---SSCPSSKEP 524
>gi|303286521|ref|XP_003062550.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456067|gb|EEH53369.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 542
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 260/434 (59%), Positives = 336/434 (77%), Gaps = 11/434 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PG ++++TFGCSHN SDSE+MAGQLSA+GY LT + E+AD+W++NT QSAM
Sbjct: 108 VPGRAKVHVRTFGCSHNISDSEFMAGQLSAYGYTLTTSPEDADLWVVNTCTVKNPSQSAM 167
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+T+I + K+A K LV+AGCVPQG ++ +EL+ ++++GV QIDRVVE VE TL G VR+L
Sbjct: 168 NTVIERGKAAGKKLVIAGCVPQGDKNARELDDLTLLGVTQIDRVVEAVERTLAGDAVRML 227
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+K LPALDLPK+RRN+ VEI+P++ GCLG CTYCKTKHARG LGSY E+LV RV+T I
Sbjct: 228 AKKTLPALDLPKIRRNEHVEIVPLSTGCLGKCTYCKTKHARGELGSYAPEALVARVQTAI 287
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 288 AEGVTEIWLSSEDTGAYGIDLGTDVTRLLRDVTAALPKDGSCMLRLGMTNPPYILAHLDA 347
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+AE + HP VY+FLH+PVQ+GSDAVL M REY ++DF VVDTL+E VPG+ IATDIIC
Sbjct: 348 VAEAMHHPGVYAFLHIPVQAGSDAVLGRMKREYVVADFEKVVDTLLERVPGITIATDIIC 407
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGET+ED+ T+ L ++Y F ++H+SQFYPRPGTPAARMKKV S VK+RSRELT+
Sbjct: 408 GFPGETEEDWEMTMALCRKYDFIELHLSQFYPRPGTPAARMKKVNSREVKRRSRELTNYI 467
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKIT 463
E++ P+ + G +R+W+T+IA DGI LV HTK YVQVL+P ++G SA+VKI
Sbjct: 468 ESYLPHGALVGTTQRVWVTDIAKDGISLVAHTKSYVQVLLPGGEAERARLMGKSAVVKII 527
Query: 464 SVGRWSVFGEVIKI 477
RW V GEV+++
Sbjct: 528 ESARWYVRGEVLEV 541
>gi|384253319|gb|EIE26794.1| hypothetical protein COCSUDRAFT_35241 [Coccomyxa subellipsoidea
C-169]
Length = 494
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 262/426 (61%), Positives = 330/426 (77%), Gaps = 11/426 (2%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIWLINT-------QSAMDTLI 111
I++KTFGC+HN SDSEYM GQL +GY L D + AD+WL+NT Q+AM TL+
Sbjct: 14 IWVKTFGCAHNMSDSEYMMGQLQDYGYRLLADDKQDAADLWLVNTCTVKNPSQAAMSTLV 73
Query: 112 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
A+ K+ K LVV GCVPQG + + EL+ +S++GV QIDRVVE VEETL+G+ V +L +KK
Sbjct: 74 ARGKALNKKLVVCGCVPQGDKKVPELQDLSLLGVTQIDRVVEAVEETLRGNVVHMLAKKK 133
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG- 230
LP LDLPKVRRN VEILP++ GCLGACTYCKTKHARG LGSY + +LV R D
Sbjct: 134 LPRLDLPKVRRNAHVEILPLSTGCLGACTYCKTKHARGQLGSYELSALVHRAAAAAVDPL 193
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
V+EVWLSSEDTGAYGRD+ +LP LL A+ A LP DG T+LRIGMTNPPFILEHL +IAE
Sbjct: 194 VREVWLSSEDTGAYGRDLDTSLPDLLRALTAALPSDGRTILRIGMTNPPFILEHLPDIAE 253
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
L HPCV+S+LHVPVQSGSDAVL+AMNREYT ++FR V DTL+ELVPG+++ATDIICGFP
Sbjct: 254 ALNHPCVFSYLHVPVQSGSDAVLAAMNREYTSAEFRRVADTLLELVPGLELATDIICGFP 313
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
GETDEDF T+ L+++Y+FP HISQFYPRPGTPAARMKK+P+ V K RSR LT++ + F
Sbjct: 314 GETDEDFEATMALVRQYRFPHTHISQFYPRPGTPAARMKKLPNGVAKARSRALTALVDGF 373
Query: 411 TP-YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 469
Y + G ++R+ + E+AADG HLVGHTK Y+QVL+ ++G+ V++T+ RW+
Sbjct: 374 GDCYQRLVGSLQRVCVVELAADGRHLVGHTKSYIQVLLEPQEGLMGSVVTVRVTAASRWN 433
Query: 470 VFGEVI 475
V G+++
Sbjct: 434 VTGDIV 439
>gi|255075877|ref|XP_002501613.1| predicted protein [Micromonas sp. RCC299]
gi|226516877|gb|ACO62871.1| predicted protein [Micromonas sp. RCC299]
Length = 435
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/433 (58%), Positives = 332/433 (76%), Gaps = 11/433 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PG +++KTFGCSHN SDSE+MAGQL A+GY L + ++AD+W++NT QSAM
Sbjct: 3 VPGVAKVHVKTFGCSHNHSDSEFMAGQLGAYGYDLVTDPDDADVWVVNTCTVKNPSQSAM 62
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+T+I K K+ K LV+AGCVPQG + KELE +S++GV QIDR+V+VVE TL G VRLL
Sbjct: 63 NTVITKGKAQGKKLVIAGCVPQGDKKAKELEDLSLIGVTQIDRIVDVVERTLAGDAVRLL 122
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+K LP+LDLPKVRRN+ VEILP++ GCLG CTYCKTKHARG LGSY+ E+LV RV+T I
Sbjct: 123 EKKPLPSLDLPKVRRNEHVEILPLSTGCLGQCTYCKTKHARGELGSYSPEALVQRVQTAI 182
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
A+GV E+WLSSEDTGAYG D+G ++ LL + A LP DGS MLR+GMTNPP+IL HL
Sbjct: 183 AEGVTEIWLSSEDTGAYGIDLGTDITRLLRDLTAVLPTDGSCMLRLGMTNPPYILAHLDA 242
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+AE + HP VY+FLH+PVQ+GSDAVL M REY +++F V DTL+ VPG+ IATDIIC
Sbjct: 243 VAEAMHHPSVYAFLHIPVQAGSDAVLDRMKREYVVAEFEKVADTLLAKVPGITIATDIIC 302
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGET ED+ +T+ L ++Y+F ++H+SQFYPRPGTPAARMK+V + VK+RSRELT+
Sbjct: 303 GFPGETSEDWEKTMALCRKYEFVELHLSQFYPRPGTPAARMKRVDTKEVKRRSRELTAYI 362
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKIT 463
E++ P+ + G +R+W+T++A D + LVGHTK YVQVL+P + ++G SA V+I
Sbjct: 363 ESYRPHDALVGTTQRVWVTDVAKDKVSLVGHTKSYVQVLLPGGEANRARLMGKSAEVRII 422
Query: 464 SVGRWSVFGEVIK 476
RW V GEVI+
Sbjct: 423 DAHRWHVTGEVIE 435
>gi|307110241|gb|EFN58477.1| hypothetical protein CHLNCDRAFT_19538, partial [Chlorella
variabilis]
Length = 499
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 263/437 (60%), Positives = 326/437 (74%), Gaps = 16/437 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD--NSEEADIWLINT-------QS 105
+PGT+ I++KTFGCSHN SDSEYM GQL +G+ L D +S AD+WL+NT QS
Sbjct: 63 VPGTQRIWVKTFGCSHNSSDSEYMMGQLQEYGFKLVDEADSAAADLWLLNTCTVKSPSQS 122
Query: 106 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
AMDTL+ + + K L+VAGCVPQG R EL G+S++GV QIDRVVE VEETLKGH V+
Sbjct: 123 AMDTLLRRGRRLGKALLVAGCVPQGDRRTAELRGLSLLGVTQIDRVVEAVEETLKGHTVQ 182
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
LL +K LP LDLPKVRRN+ +EILP++ GCLGACTYCKTKHARG LGSY LV R
Sbjct: 183 LLAKKALPRLDLPKVRRNRHIEILPLSTGCLGACTYCKTKHARGQLGSYDPAELVRRAAA 242
Query: 226 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
AD V+E+WLSSEDTGAYGRDIG +LP LL +V LPPDG MLR+GMTNPPFILEH
Sbjct: 243 AAADPQVREIWLSSEDTGAYGRDIGTSLPALLRELVEVLPPDGRCMLRVGMTNPPFILEH 302
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ +LR V+S+LHVPVQSGSDAVL+AM REY+ + FR V DTL+ VPG+++ATD
Sbjct: 303 LAEVGAILRDDRVFSYLHVPVQSGSDAVLTAMRREYSAAQFRRVCDTLLAAVPGLELATD 362
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
IICGFPGET+ED T+ L+ +Y+FP HISQFYPRPGTPAARM++VP+AVVK+RSRE+T
Sbjct: 363 IICGFPGETEEDHGATLALLDKYRFPHCHISQFYPRPGTPAARMRRVPTAVVKQRSREVT 422
Query: 405 SVFEAFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS-----TGNMLGTSA 458
+ E++ Y G+ G +R + + AADG+H V H K Y QVLVP+ +G++LG
Sbjct: 423 AAVESWCGSYSGLVGATQRCCVVDTAADGVHAVAHNKAYTQVLVPAEAPDGSGSLLGCVV 482
Query: 459 LVKITSVGRWSVFGEVI 475
++ S RWSV EV+
Sbjct: 483 EARVVSASRWSVKAEVV 499
>gi|159475142|ref|XP_001695682.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275693|gb|EDP01469.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 258/433 (59%), Positives = 328/433 (75%), Gaps = 12/433 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE--ADIWLINT-------QS 105
+PGT+ +++KTFGCSHN SDSEYMAGQLS +GY L +++E AD+WLIN+ Q+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLSDYGYRLVEDAERDAADLWLINSCTVKGPSQA 62
Query: 106 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
M LIA K+ K +VVAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ V
Sbjct: 63 GMSNLIAAGKAGGKRVVVAGCVPQGDKKLPELQGVSVLGVTQIDRVVEAVEETLRGNTVS 122
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+L +K LP LDLPKVRRNK +EI+PI+ GCLGACTYCKTKHARGHLGSY +L RVR
Sbjct: 123 MLAKKALPRLDLPKVRRNKHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALAERVRQ 182
Query: 226 VIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
AD V+E+WLSSEDTGAYGRDIG +LP LL+ ++A LPPDG T+LR+GMTNPP++LEH
Sbjct: 183 AAADPWVREIWLSSEDTGAYGRDIGSSLPELLDKLIAVLPPDGRTLLRVGMTNPPYVLEH 242
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L+ + + LRHPCV+S+LHVPVQS SDAVL AM REYT+++FR V+DTL+ VPGM++ATD
Sbjct: 243 LEALCKALRHPCVFSYLHVPVQSASDAVLEAMKREYTVAEFRRVIDTLLAGVPGMELATD 302
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 403
II FPGE+ ED T+ L++ Y+FP HISQFYPRPGTPAARMK K+P+ V K+RSREL
Sbjct: 303 IITAFPGESPEDHAATLELLRTYRFPHTHISQFYPRPGTPAARMKNKIPTQVSKQRSREL 362
Query: 404 TSVFEAFTP-YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ +++ Y + G V+R + + AADG+ LV HT+ Y QVL+ ++G V I
Sbjct: 363 AAEVDSWADVYQHLVGTVQRAVVVDTAADGVSLVAHTRSYTQVLLEPQPGLMGAVVEVAI 422
Query: 463 TSVGRWSVFGEVI 475
S RWSV G V+
Sbjct: 423 DSASRWSVRGRVV 435
>gi|348685958|gb|EGZ25773.1| hypothetical protein PHYSODRAFT_555473 [Phytophthora sojae]
Length = 649
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 258/477 (54%), Positives = 352/477 (73%), Gaps = 13/477 (2%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QS 105
P +PG++ I+MKT+GCSHN SDSEYM G L+++GY T + + A +WL+N+ Q+
Sbjct: 56 PSVPGSQLIWMKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 115
Query: 106 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
A L+ K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 116 AFMHLVVKGRKQSKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 175
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 176 LLSKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 235
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
VI++GV E+WLSSEDTGAYG DIG +LP LL ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 236 VISEGVTEIWLSSEDTGAYGIDIGTDLPTLLRKLL-EVVPDG-VMLRVGMTNPPYILDHL 293
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
IAEVL+H VYSFLHVPVQSGSD VL AMNREYT ++FR V D L+ VP + +ATDI
Sbjct: 294 DAIAEVLKHERVYSFLHVPVQSGSDDVLLAMNREYTAAEFRRVADELLAKVPDLTLATDI 353
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFP ET+E F++T++L+++Y+F ++ISQFYPRPGTPAA+MK+VP+ VVK RSR+LT
Sbjct: 354 ICGFPSETEEHFDETMDLVEKYRFHIMNISQFYPRPGTPAAKMKRVPTQVVKNRSRKLTK 413
Query: 406 VFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+FE F PY + G +++W+ TE++ D + V HTK Y +VL+P +++G SA V++ +
Sbjct: 414 LFETFEPYTHLVGTTQKVWVNTEVSDDKKYTVAHTKNYTKVLLPRDDSLIGCSAEVRVLT 473
Query: 465 VGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDPSAC 521
R+ + GEVI ++ + I Q+R + S + ++++ + + + S+C
Sbjct: 474 AARFHITGEVI---SRSQPATVAAAAIREQIRTEGDLSAADRSKALSKAQKAAASSC 527
>gi|424513077|emb|CCO66661.1| predicted protein [Bathycoccus prasinos]
Length = 614
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/452 (55%), Positives = 336/452 (74%), Gaps = 11/452 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PGT+ I++KTFGC+HN SDSE+M+GQL A+GY LTD+ EA++W++NT Q+AM
Sbjct: 79 VPGTQRIHVKTFGCAHNHSDSEFMSGQLQAYGYKLTDDPSEANLWVVNTCTVKNPSQAAM 138
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+T++A+ K+ + P+VV GCVPQG + KEL VS++GV QIDR+VE VE TL+G V +L
Sbjct: 139 NTVLARAKTNEVPVVVCGCVPQGDQKAKELAEVSLLGVSQIDRIVEAVERTLRGERVLML 198
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+K LP LDLPKVRRN+ VEI+P++ GCLG CTYCKTKHARG LGSY +E+++GR + I
Sbjct: 199 EKKSLPKLDLPKVRRNERVEIIPLSTGCLGQCTYCKTKHARGELGSYEIEAIIGRAKLAI 258
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+GV E+WLSSEDTGAYG DIG N+ L A+V LP D S MLR+GMTNPP+IL HL
Sbjct: 259 EEGVTEIWLSSEDTGAYGLDIGSNVAELFKALVDVLPADQSVMLRLGMTNPPYILAHLPA 318
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
IAE +RHP V+S++H+PVQSGS VL M REYT +F V D L+E VP + IATDIIC
Sbjct: 319 IAEAMRHPSVFSWIHIPVQSGSSKVLDDMKREYTREEFEQVCDYLLEHVPDITIATDIIC 378
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGET+ ++ +T++LI++YKFP+VHISQFY RP TPA RMK+V + VK RSRELT +
Sbjct: 379 GFPGETESEWRETMSLIEKYKFPEVHISQFYARPNTPAFRMKRVNTLTVKNRSRELTKLT 438
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP----STGNMLGTSALVKIT 463
E++ P+ +EG+ ++WIT+IAADG+ LVGHTK Y Q+L+P + +GTSA VK+
Sbjct: 439 ESYFPWTKLEGQKMKVWITDIAADGVSLVGHTKSYSQILLPGGEENVEKYMGTSAHVKVL 498
Query: 464 SVGRWSVFGEVIKILNQVDDKIASNRRISSQV 495
S RWS E+I+ ++ I S+ + ++
Sbjct: 499 SSSRWSCKAEIIENESEAAAGIQSSTSLHKKI 530
>gi|196007898|ref|XP_002113815.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
gi|190584219|gb|EDV24289.1| hypothetical protein TRIADDRAFT_26388 [Trichoplax adhaerens]
Length = 529
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/491 (53%), Positives = 346/491 (70%), Gaps = 17/491 (3%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDN-HLSKTGSLSPKIPGTE 59
+EDIEDL++ ++ N V + + +K + + N + + IPGT+
Sbjct: 10 VEDIEDLISKEESYSVDVRSKISRNNVKLRSRPSKRQGKSDSNVEVDEKAVGDSIIPGTQ 69
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IA 112
IY++T+GCSHN+SD EYMAGQLS++GY +T+ EEAD+WL+N+ A D+ I
Sbjct: 70 GIYIRTWGCSHNKSDGEYMAGQLSSYGYKITEIPEEADLWLLNSCAVKNPAEDSFYNDIR 129
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K K KK LV+AGCVPQG + ++G+S+VGVQQIDRVVEVVEETLKGH VRL +K+
Sbjct: 130 KAKELKKYLVLAGCVPQGQKRHPLMDGISVVGVQQIDRVVEVVEETLKGHSVRLFGQKRK 189
Query: 173 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
L+LPK+R+N VEI+ IN GCL ACTYCKTKHARG LGSY +E +V R +T
Sbjct: 190 NGKKLGGAPLNLPKIRKNPLVEIIAINTGCLNACTYCKTKHARGDLGSYPIEDIVERAKT 249
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+GV E+W++SEDTGAYG DIGV+LP LL +V ++ PDG+ MLRIGMTNPP+ILEHL
Sbjct: 250 AFNEGVAEIWITSEDTGAYGIDIGVSLPDLLWQLV-KVIPDGA-MLRIGMTNPPYILEHL 307
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+E+A++L HP VYSFLHVPVQ+GSD VL M REYT++DF VV+ L + VPG+ IATDI
Sbjct: 308 EEMAKILSHPRVYSFLHVPVQAGSDKVLYDMRREYTVTDFEKVVNYLSDKVPGITIATDI 367
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFP E +DF +T+ LI+ +KFP V I+QFYPRPGTPAA+MK++P+ VK RSRELT
Sbjct: 368 ICGFPTEEKDDFAKTLRLIERHKFPSVFINQFYPRPGTPAAKMKRIPTEEVKNRSRELTQ 427
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+F+++ PY G +RI ITE++ DG H VGH K Y QVLVP ++LG + V I
Sbjct: 428 LFKSYRPYDHKLGERQRILITELSHDGNHFVGHNKFYDQVLVPMDMDLLGKTVEVDIIET 487
Query: 466 GRWSVFGEVIK 476
G+ + G V++
Sbjct: 488 GKHYLMGRVVR 498
>gi|340371624|ref|XP_003384345.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Amphimedon queenslandica]
Length = 550
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/448 (56%), Positives = 327/448 (72%), Gaps = 16/448 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG+++IY+KT+GCSHN SD EYMAG L+A GY +TD+ +A +WL+N+ +
Sbjct: 63 IPGSQSIYIKTWGCSHNTSDGEYMAGLLAAEGYTITDSPLDAHVWLLNSCTVKGPSEDGF 122
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ I K K K LVVAGCVPQG +DL E++ +S VGV+QIDR+VEVVE LKG VRL
Sbjct: 123 KSAIKKGKELNKTLVVAGCVPQGQKDLDEIKDISAVGVKQIDRIVEVVEGALKGGTVRLF 182
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
K+ P+L+LPK+R+N VEI+PIN GCL CTYCKTKH+RG+L SY + ++
Sbjct: 183 GTKRGSGRQLAGPSLELPKIRKNPLVEIIPINSGCLNHCTYCKTKHSRGNLASYYPQEII 242
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R +GV E+WL+SEDTGAYGRDIGV LP LL +V E+ P+GS MLRIGMTNPP+
Sbjct: 243 SRATQAFEEGVVEIWLTSEDTGAYGRDIGVTLPELLWQLV-EVMPEGS-MLRIGMTNPPY 300
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
I+EHL+E+A++L HP VYSFLHVPVQSGSDAVL M REYT+ FR VVD L E VPG+
Sbjct: 301 IMEHLEEMAKILSHPRVYSFLHVPVQSGSDAVLGEMKREYTIKQFRKVVDYLKEQVPGVT 360
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATD+ICGFP ET+EDF++T++L+ EYKFP + I+QFYPRPGTPAA+MK++P+ VK RS
Sbjct: 361 IATDVICGFPTETEEDFSETLSLVNEYKFPSLFINQFYPRPGTPAAKMKRIPTNEVKNRS 420
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
R+LT +F ++TPY G +E I +TE++ D + VGHTK Y QVLVP ++G ALV
Sbjct: 421 RKLTELFHSYTPYSKRVGGIETILVTEMSHDKRYYVGHTKYYEQVLVPQYKELMGKMALV 480
Query: 461 KITSVGRWSVFGEVIKILNQVDDKIASN 488
KI S G+ + GE+I +L D + ++
Sbjct: 481 KIVSTGKHFMMGEIIDVLRLPSDSVIND 508
>gi|340509229|gb|EGR34782.1| hypothetical protein IMG5_001960 [Ichthyophthirius multifiliis]
Length = 587
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/499 (50%), Positives = 336/499 (67%), Gaps = 26/499 (5%)
Query: 3 DIEDLLAGSG-GGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------- 54
D+EDL+ G+ RL N + PK + + L T S
Sbjct: 7 DLEDLIQGNELADEYTQNVRLKPNTIKKRPKKQLKQSEQKQDTLEHTADDSEIKFNQSTN 66
Query: 55 ------IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----- 103
IPG + +Y+KTFGCSHN SDSE+M GQL+ +GY L +N +EADI L+N+
Sbjct: 67 TQQNTIIPGIQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLVENEKEADIILVNSCTVKN 126
Query: 104 --QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 161
Q A T++ K K +VVAGCVPQG R++ LE VS++G+ QIDRVVEV+EETLKG
Sbjct: 127 PSQDAFMTVVKSAKQQNKHIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVIEETLKG 186
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ VRLL +K LP+LDLPK+R+N +EI+PIN GCLG+CTYCKTKHARG LGSYT+E+++
Sbjct: 187 NTVRLLGKKALPSLDLPKIRKNNLIEIIPINTGCLGSCTYCKTKHARGKLGSYTLEAILA 246
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
R V +GVKE+WL+SEDTGAYGRDIG ++ LL +V +LP D MLRIGMTNPP+I
Sbjct: 247 RCEQVCEEGVKEIWLTSEDTGAYGRDIGTDISELLKHLVEKLPND--VMLRIGMTNPPYI 304
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
LEH++ I+ +L HP V+SFLH+PVQ+G++ VL MNREYT +F V D L + VP + +
Sbjct: 305 LEHMENISLILNHPRVFSFLHIPVQAGNNTVLENMNREYTREEFEYVCDYLKKNVPNVTL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
ATDIICGFP ET+ F +T++L+K+Y+FP ++ISQFYPRPGT A +MKKVPS VK RS+
Sbjct: 365 ATDIICGFPSETNAQFEETISLVKKYEFPIINISQFYPRPGTAAMKMKKVPSIDVKSRSK 424
Query: 402 ELTSVFEAFTPYLGMEGRVERIWIT---EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
++T VFE+F + + G ++++WI E LVGHTK Y +VL+P +LG S
Sbjct: 425 KITEVFESFHRWDYLVGSIQKVWINDKEEKKGRQFQLVGHTKQYAKVLLPYNEELLGQSV 484
Query: 459 LVKITSVGRWSVFGEVIKI 477
L K+ W + G +++I
Sbjct: 485 LFKVEKALMWHIEGTILEI 503
>gi|301111844|ref|XP_002905001.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
gi|262095331|gb|EEY53383.1| CDK5 regulatory subunit-associated protein 1 [Phytophthora
infestans T30-4]
Length = 624
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/431 (57%), Positives = 322/431 (74%), Gaps = 10/431 (2%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QS 105
P +PGT+ I++KT+GCSHN SDSEYM G L+++GY T + + A +WL+N+ Q+
Sbjct: 55 PSVPGTQLIWIKTYGCSHNVSDSEYMQGVLASYGYRFTQDPDAAQLWLLNSCTVKDPSQA 114
Query: 106 AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
A L K + K +VVAGCVPQ R LK LE VSIVG+QQ+DRVVEVVEETLKGH VR
Sbjct: 115 AFMHLAVKGRKQNKAVVVAGCVPQADRHLKGLEEVSIVGIQQVDRVVEVVEETLKGHTVR 174
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
LL + +LP LDLPK+R+N VEI+P++ GCLGACTYCKT+HARG LGSYT E++V R +T
Sbjct: 175 LLAKNRLPELDLPKIRKNPMVEIIPLSTGCLGACTYCKTRHARGKLGSYTPEAIVSRAQT 234
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
VI +GV E+WLSSEDTGAYG DIG +LP L+ ++ E+ PDG MLR+GMTNPP+IL+HL
Sbjct: 235 VINEGVTEIWLSSEDTGAYGIDIGTDLPTLMRKLL-EVVPDG-IMLRVGMTNPPYILDHL 292
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
IAEVL H VYSFLHVPVQSGSD VL AMNREYT +FR V D L+ VP + +ATDI
Sbjct: 293 DAIAEVLNHERVYSFLHVPVQSGSDDVLLAMNREYTAGEFRRVADELLAKVPDLTLATDI 352
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFP ET+E F++T+ L+ +Y+F ++ISQFYPRPGTPAA+MK+V + +VK RSR+LT
Sbjct: 353 ICGFPTETEEHFDETMELVDKYRFHIMNISQFYPRPGTPAAKMKRVSTQIVKNRSRKLTK 412
Query: 406 VFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+FE F PY + ++W+ TE++ D + V HTK Y +VL+P +++G +A V++ +
Sbjct: 413 LFETFEPYTRLVDTTLKVWVNTEVSDDKKYTVAHTKNYTKVLLPRDDSLIGCTAEVRVLT 472
Query: 465 VGRWSVFGEVI 475
R+ GEVI
Sbjct: 473 AARFHATGEVI 483
>gi|195456808|ref|XP_002075296.1| GK17257 [Drosophila willistoni]
gi|194171381|gb|EDW86282.1| GK17257 [Drosophila willistoni]
Length = 570
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/435 (56%), Positives = 316/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+++GY L +EAD+WL+N+ + DT
Sbjct: 71 IPGTQKVYIKTWGCAHNNSDSEYMAGQLASYGYQLCSGKDEADLWLLNSCTVKNPSEDTF 130
Query: 111 IAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ +S K +VVAGCVPQG + L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 131 RNEIESGMQNGKHVVVAGCVPQGGPKSEYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 190
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ +L LPKVR+N VEI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 191 QNKKVNGRRVAGASLALPKVRKNPLVEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 250
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 251 ERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 308
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL+HP VYSFLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 309 ILEHLEEVAKVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRARVPGLT 368
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+ DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 369 IATDIICGFPTETEADFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 428
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F + PY G G V + +TEI+ D +H VGH K Y Q+L+P N+LGT V
Sbjct: 429 KRLTDLFYTYEPYAGRVGEVYAVLVTEISHDKLHYVGHNKSYEQILLPMRKNLLGTRVHV 488
Query: 461 KITSVGRWSVFGEVI 475
+ITSV ++S+ G+++
Sbjct: 489 RITSVSKFSMMGDIL 503
>gi|348512452|ref|XP_003443757.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Oreochromis niloticus]
Length = 516
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/490 (52%), Positives = 330/490 (67%), Gaps = 24/490 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED+++ S P + P+ K K L D L + SL IPGT+
Sbjct: 9 MEDIEDMVSSSD----PTPHERQSARKSIIPRSRKKKELLSDEEL-QADSL---IPGTQK 60
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+ + I K
Sbjct: 61 IWMKTWGCSHNNSDGEYMAGQLAASGYKMTDDPTEADVWLLNSCTVKNPAEDHFRNSIKK 120
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL +KK
Sbjct: 121 AQDQEKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDG 180
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R R
Sbjct: 181 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS 240
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+ILEHL+
Sbjct: 241 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIP--EGAMLRLGMTNPPYILEHLE 298
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+ IATDII
Sbjct: 299 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCIDDFKRVVDFLKERVPGVTIATDII 358
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGET+EDF T++L+K Y+FP + I+QFYPRPGTPAARM++V + V K+R++EL+ V
Sbjct: 359 CGFPGETEEDFQATIDLVKAYRFPSLFINQFYPRPGTPAARMEQVAAHVKKQRTKELSQV 418
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G + + +TE + D + V H K Y QVLVP G +V I G
Sbjct: 419 FHSYNPYDHKVGERQHVLVTEESFDSQYYVAHNKYYEQVLVPKRVEFKGKMIVVDIYEAG 478
Query: 467 RWSVFGEVIK 476
+ + G+ ++
Sbjct: 479 KHFMKGKPVE 488
>gi|195382799|ref|XP_002050116.1| GJ21959 [Drosophila virilis]
gi|194144913|gb|EDW61309.1| GJ21959 [Drosophila virilis]
Length = 553
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/468 (52%), Positives = 331/468 (70%), Gaps = 23/468 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
+PGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+ + DT
Sbjct: 70 VPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-GKDEADLWLLNSCTVKNPSEDTF 128
Query: 111 IAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ +S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ AL LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY + +V
Sbjct: 189 QNKKVHGRRVAGAALSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPDEIV 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 367 IATDIICGFPTETEQDFEETMTLCEKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F ++ PY G EG++ + +TEI+ D +H VGH K Y QVL+P N+LGT V
Sbjct: 427 KRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRV 486
Query: 461 KITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNE 508
+IT ++S+ E++ D++ R S+ Q K S+ SS+ +
Sbjct: 487 RITGTSKFSMMAEIL------DEESDWTRCDYSKQTQPKASTSSSRGQ 528
>gi|156382226|ref|XP_001632455.1| predicted protein [Nematostella vectensis]
gi|156219511|gb|EDO40392.1| predicted protein [Nematostella vectensis]
Length = 555
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/437 (55%), Positives = 317/437 (72%), Gaps = 17/437 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY++T+GCSHN SDSEYMAGQL+A+GY +TD+ + AD+WL+N+ +
Sbjct: 58 IPGTQTIYVRTWGCSHNNSDSEYMAGQLAAYGYKITDDEQCADLWLLNSCTVKSPAEDGF 117
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K K+ K LVVAGCVPQG ++G+S+VGVQQIDRVVEVVEETLKGH VRL
Sbjct: 118 RNAIKKAKAQGKHLVVAGCVPQGQPRHDTVKGISVVGVQQIDRVVEVVEETLKGHTVRLF 177
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK +LDLPK+R+N VEI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 178 GQKKADGKKTGGASLDLPKIRKNPLVEIIAINTGCLNQCTYCKTKHARGDLGSYPPEEIV 237
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYG+DIGV LP LL +V +P G +RIGMTNPP+
Sbjct: 238 NRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPELLWQLVKVIPEGGR--MRIGMTNPPY 295
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VYSFLHVPVQS S VL+ M REY DF VV+ L + VP +
Sbjct: 296 ILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLADMKREYIAEDFEHVVNYLRQRVPDLT 355
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATD+ICGFP ET++DF +T++L+K+YKFP + I+QFYPRPGTPAARMK++P+ VK+R+
Sbjct: 356 IATDLICGFPTETEDDFQKTLDLVKKYKFPSLFINQFYPRPGTPAARMKRLPTEEVKRRT 415
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV-PSTGNMLGTSAL 459
RE++ +F+++T Y G V+ + +TE + DG+H VGH K Y QVLV G ++G
Sbjct: 416 REVSKLFQSYTTYDHKVGAVQEVLVTEESHDGVHYVGHNKAYDQVLVKKDEGELMGKIVK 475
Query: 460 VKITSVGRWSVFGEVIK 476
V++TS G+ + G V++
Sbjct: 476 VEMTSSGKHYLMGRVMQ 492
>gi|195027257|ref|XP_001986500.1| GH20489 [Drosophila grimshawi]
gi|193902500|gb|EDW01367.1| GH20489 [Drosophila grimshawi]
Length = 554
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/496 (51%), Positives = 339/496 (68%), Gaps = 28/496 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKN---KPRLHDNHLSKTGSL----SP 53
++DIEDL++ P R N V + K KP L D+ +T
Sbjct: 12 IDDIEDLISADD---IKPRDRYE-NKKNVTVRAKKRAPIKPTLSDDEKEETKPQKIIHES 67
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDT 109
IPGT+ +Y+KT+GC+HN SDSEYMAGQL++FGY L+ +E AD+WL+N+ + DT
Sbjct: 68 VIPGTQKVYVKTWGCAHNNSDSEYMAGQLASFGYKLSGKNE-ADLWLLNSCTVKNPSEDT 126
Query: 110 LIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
+ ++ K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRL
Sbjct: 127 FRNEIEAGMRNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRL 186
Query: 167 LHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
L KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +
Sbjct: 187 LQNKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEI 246
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VDRARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGL 364
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 365 TIATDIICGFPTETEQDFEETMTLCEKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424
Query: 400 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
++ LT +F ++ PY G EG++ + +TEI+ D +H VGH K Y QVL+P N+LGT
Sbjct: 425 TKRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVR 484
Query: 460 VKITSVGRWSVFGEVI 475
V+ITS ++S+ GE++
Sbjct: 485 VRITSSSKFSMMGEIL 500
>gi|363730366|ref|XP_418914.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Gallus gallus]
Length = 582
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/489 (51%), Positives = 334/489 (68%), Gaps = 21/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED++ S P +R V + ++ R + S+ IPG +
Sbjct: 9 LEDIEDIV--SAQDLKPRDWRFVRKNVFPKVRKRSSQQRAQTDDDPPHDSV---IPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+ + I K
Sbjct: 64 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHFRNSIKK 123
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQS 243
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHLE 301
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IATDII
Sbjct: 302 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDII 361
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L+ +
Sbjct: 362 CGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQL 421
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G +R+ +TE + D + V H Y QVLVP ++G V I G
Sbjct: 422 FHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPALMGKMVEVNIYEAG 481
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 482 KHFMKGQPV 490
>gi|195335207|ref|XP_002034266.1| GM19985 [Drosophila sechellia]
gi|194126236|gb|EDW48279.1| GM19985 [Drosophila sechellia]
Length = 556
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/457 (53%), Positives = 325/457 (71%), Gaps = 28/457 (6%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINT----QSAMDTLIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQ 146
EEAD+WL+N+ + DT + KS K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYIVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 147 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 198
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVLGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 199 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 258
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 318
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342
Query: 319 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 378
EY DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402
Query: 379 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G + + +TE++ D +H VGH
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYVGH 462
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
K Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 463 NKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499
>gi|383859676|ref|XP_003705318.1| PREDICTED: CDKAL1-like protein-like [Megachile rotundata]
Length = 540
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/489 (51%), Positives = 337/489 (68%), Gaps = 23/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+ S P + V K N+ + L + + +PGT+T
Sbjct: 9 IEDIEDLI--SSQDITPKERYSSRKNITVRSKRNQLR-----EELPQPPVFNSIVPGTQT 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
IY+KT+GC+HN SDSEYMAGQL+A+GY LT++ +AD+WL+N+ A D + ++
Sbjct: 62 IYVKTWGCTHNSSDSEYMAGQLAAYGYRLTEDKSKADLWLLNSCTVKSPAEDHFRNEIEA 121
Query: 117 AKKP---LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 122 GRKQGKHIVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNSVRFLQQKKEA 181
Query: 174 -------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 182 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 241
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTG YGRDIG +LP LL ++ E+ PDG M+R+GMTNPP+ILEHL+
Sbjct: 242 FEEGVCELWLTSEDTGTYGRDIGTSLPELLWKLI-EVVPDGC-MIRVGMTNPPYILEHLE 299
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+ IATDII
Sbjct: 300 EMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFEMVVNFLRERVPGLTIATDII 359
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM+KVP+ VKKR++ L+
Sbjct: 360 CGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMQKVPTQDVKKRTKRLSEF 419
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F++++PY G ++ + +TE++ D H V H K Y QVLVP LG VKI
Sbjct: 420 FQSYSPYDNRVGLIQDVLVTEVSHDKKHYVAHNKFYEQVLVPLKEEYLGKMIKVKIVETT 479
Query: 467 RWSVFGEVI 475
++S+ GE I
Sbjct: 480 KYSMKGEPI 488
>gi|195584188|ref|XP_002081896.1| GD25482 [Drosophila simulans]
gi|194193905|gb|EDX07481.1| GD25482 [Drosophila simulans]
Length = 556
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/457 (53%), Positives = 325/457 (71%), Gaps = 28/457 (6%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP++H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPKIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GK 104
Query: 94 EEADIWLINT----QSAMDTLIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQ 146
EEAD+WL+N+ + DT + KS K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIKSGMQNGKYVVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 147 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 198
QIDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQ 224
Query: 199 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 258
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWK 284
Query: 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 318
+V +P + MLR+GMTNPP+ILEHL+E+A+V++HP VYSFLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPEN--CMLRVGMTNPPYILEHLEEVAKVMQHPRVYSFLHVPVQSGSDSVLGEMKR 342
Query: 319 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 378
EY DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFF 402
Query: 379 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G + + +TE++ D +H VGH
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEIYTVLVTEVSHDKLHYVGH 462
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
K Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 463 NKSYEQVLLPMRDNLLGTRVNVRITSASKFSMVGEIL 499
>gi|194755317|ref|XP_001959938.1| GF11786 [Drosophila ananassae]
gi|190621236|gb|EDV36760.1| GF11786 [Drosophila ananassae]
Length = 557
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/492 (51%), Positives = 338/492 (68%), Gaps = 36/492 (7%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
K KP +H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ E
Sbjct: 59 KPKPTIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKE 107
Query: 95 EADIWLINT----QSAMDTLIAKCKSAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQ 147
+AD+WL+N+ + DT + +S K +VVAGCVPQG+ L G+S++GVQQ
Sbjct: 108 DADLWLLNSCTVKNPSEDTFRNEIESGMKNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQ 167
Query: 148 IDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGAC 199
IDRVVEVVEETLKGH VRLL KK L LPKVR+N +EI+ IN GCL C
Sbjct: 168 IDRVVEVVEETLKGHSVRLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQC 227
Query: 200 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 259
TYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +
Sbjct: 228 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKL 287
Query: 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 319
V +P MLR+GMTNPP+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M RE
Sbjct: 288 VEVIPE--HCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKRE 345
Query: 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 379
Y DF VVD L E VPG+ IATDIICGFP ET+ DF +T+ L +Y+FP + I+QF+P
Sbjct: 346 YCRKDFEHVVDFLRERVPGVTIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFP 405
Query: 380 RPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHT 439
RPGTPAA+M+++P+ +VKKR++ LT +F + PY G G++ + +TEI+ D +H VGH
Sbjct: 406 RPGTPAAKMERIPANLVKKRTKRLTDLFYTYEPYSGRVGQIYTVLVTEISHDKLHYVGHN 465
Query: 440 KGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQD- 498
K Y QVL+P N+LGT V+ITS ++S+ GE++ DD+ R + Q +D
Sbjct: 466 KSYEQVLLPMRENLLGTRVHVRITSASKFSMVGEIL------DDERDWTRCANKQEEKDA 519
Query: 499 -KCSSCSSQNES 509
K + +++N++
Sbjct: 520 PKAEAVTTRNDN 531
>gi|387015104|gb|AFJ49671.1| CDK5 regulatory subunit associated protein 1-like 1 [Crotalus
adamanteus]
Length = 577
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/489 (50%), Positives = 335/489 (68%), Gaps = 21/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ P F N + PK K + + + + IPG +
Sbjct: 9 LEDIEDIVSAED----PKPFDRQFNRKNIIPKVRKRQSQ-KNVEVDDPPPRDSVIPGIQK 63
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY++T+N+ EAD+WL+N+ + I K
Sbjct: 64 IWIRTWGCSHNSSDGEYMAGQLAAYGYSITENAAEADLWLLNSCTVKSPAEDHFRNSIKK 123
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ KK +V+AGCVPQ L G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 124 AQEGKKKIVLAGCVPQAQPRQDYLHGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 183
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY++E LV R +
Sbjct: 184 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYSIEELVNRGKQS 243
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 244 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 301
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L VPG+ +ATDII
Sbjct: 302 EMAKILNHPRVYAFLHVPVQSASDSVLMDMKREYCVADFKHVVDFLKTKVPGITVATDII 361
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETDEDF +T+ L++EY+FP + I+QFYPRPGTPAA+M +VP+ + K+R++EL+ +
Sbjct: 362 CGFPGETDEDFQETMKLVEEYRFPSLFINQFYPRPGTPAAKMPQVPAQIKKQRTKELSKL 421
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G +++ +TE + D V H K Y Q+LVP + +G V+I G
Sbjct: 422 FHSYNPYDHKIGERQKVLVTEESFDSKFYVAHNKFYEQILVPKNPDFMGKMVEVEIFEAG 481
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 482 KHFMRGQPV 490
>gi|45361233|ref|NP_989194.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
(Silurana) tropicalis]
gi|82186429|sp|Q6P4Y0.1|CDKAL_XENTR RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|38649005|gb|AAH63205.1| CDK5 regulatory subunit associated protein 1-like 1 [Xenopus
(Silurana) tropicalis]
Length = 553
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/492 (51%), Positives = 340/492 (69%), Gaps = 27/492 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKNK + + T IPGT
Sbjct: 9 LDDIEDIVSATD---PKPHDRQNARQNIVPRARKRNKNKIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+ + I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEQADLWLLNSCTVKSPAEDHFRNSI 119
Query: 112 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K + A K +V++GCVPQ + ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVLSGCVPQAQPRQEYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 172 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAA 239
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHVKKQRTKELS 417
Query: 405 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+F +++PY G + + +TE + D + V H + Y QVLVP +G VKI
Sbjct: 418 QLFHSYSPYDHKIGEEQHVLVTEESFDSQYYVSHNRFYEQVLVPKDPAFVGKMVEVKIFE 477
Query: 465 VGRWSVFGEVIK 476
G+ + G+ ++
Sbjct: 478 AGKHFMKGQPVQ 489
>gi|307190740|gb|EFN74642.1| CDKAL1-like protein [Camponotus floridanus]
Length = 542
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/489 (52%), Positives = 332/489 (67%), Gaps = 22/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + V PK K + + + LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITVRPKRRKQE----QEEVPQPPILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY+KT+GC+HN SD+EYMAGQL+ +GY L+D+ +AD+WL+N+ + I
Sbjct: 63 IYVKTWGCTHNNSDTEYMAGQLAMYGYNLSDDKLKADLWLLNSCTVKNPAEDQFRNEIEH 122
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
K K +V+AGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKG+ VR LH+KK
Sbjct: 123 GKKIGKHIVIAGCVPQGAPKSSFLQGLSIIGVQQIDRVVEVVEETLKGNTVRFLHQKKNS 182
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKMGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYQPEEIVERAKQA 242
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTSLPELLWKLV-DVIPDGC-MMRVGMTNPPYILEHLD 300
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF V+ L E VPG+ IATDII
Sbjct: 301 EMAKILRHPKVYSFLHIPVQSGSDQVLADMRREYTRADFEHTVNFLSERVPGLTIATDII 360
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+ VK R++ L+
Sbjct: 361 CGFPTETEVDFEETMALCQKYKFPSLFINQFFSRPGTPAARMPKVPTQEVKTRTKRLSEF 420
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F+++ PY G ++++ ITE++ D H VGH K Y QVL+P LG VKIT
Sbjct: 421 FQSYEPYQHKVGLLQKVLITEMSHDKQHYVGHNKFYEQVLIPMEERYLGKMIDVKITEAT 480
Query: 467 RWSVFGEVI 475
++S+ GE I
Sbjct: 481 KFSMKGEPI 489
>gi|432112178|gb|ELK35117.1| CDK5 regulatory subunit-associated protein 1-like 1 [Myotis
davidii]
Length = 572
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 316/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I + + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKRAQEENKKIVLAGCVPQAQPRQDYLQGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL HP VY+FLH+PVQS SDAVL AM REY ++DFR VVD L E VPG+
Sbjct: 297 ILEHLEEMAKVLNHPRVYAFLHIPVQSASDAVLMAMKREYCVADFRRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKYPTFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|428184659|gb|EKX53514.1| hypothetical protein GUITHDRAFT_64346 [Guillardia theta CCMP2712]
Length = 563
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 242/426 (56%), Positives = 313/426 (73%), Gaps = 10/426 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINT-------QSA 106
IPG + I++KT GC+HN SD EYMAG L+++GY +T+ SE+ D +L N+ Q +
Sbjct: 2 IPGMQRIFLKTQGCAHNVSDGEYMAGLLASYGYEITETWSEDVDCFLFNSCTVKGPSQDS 61
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
++AK KS+ +VVAGCVPQG E + VSI+G QQI RVVEVVEE +KG+ V+L
Sbjct: 62 FLNMVAKAKSSGASVVVAGCVPQGEPGRGEFDDVSIIGTQQIHRVVEVVEEAIKGNTVKL 121
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L +++ PAL+LPK+RRN VEI+PI++GCL CTYCKTKHARG L SYT +S+V RVRTV
Sbjct: 122 LGQRERPALELPKIRRNALVEIVPISMGCLNHCTYCKTKHARGDLVSYTPDSIVSRVRTV 181
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
I++GV+EVWLSSEDTGAYG+DI V+LP LL AIV LP DG MLR+GMTNPP ILEH +
Sbjct: 182 ISEGVREVWLSSEDTGAYGKDINVSLPYLLGAIVDALP-DG-VMLRVGMTNPPHILEHKE 239
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
+A VL HP V+ FLH+PVQ GSD VL M REYT DF +VD L+E VP + IATDII
Sbjct: 240 AVARVLNHPRVFKFLHIPVQCGSDKVLQDMKREYTRKDFEVLVDYLLEHVPDITIATDII 299
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP E++EDF T++L+ +YKFP V+I+QFYPRPGT AA+M K+ S VVK RSR +T+
Sbjct: 300 CGFPTESEEDFQHTMDLLDKYKFPIVNIAQFYPRPGTVAAKMPKLQSGVVKDRSRRVTAH 359
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
FE++ + + GR ER+W+ E D ++VGHT GY QVL+P +LG S + ++ S
Sbjct: 360 FESYRTWDHLVGRKERVWVIEYGKDENYVVGHTAGYTQVLLPRDAKLLGRSVIAQVVSAD 419
Query: 467 RWSVFG 472
+WSV G
Sbjct: 420 KWSVKG 425
>gi|224045698|ref|XP_002191115.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Taeniopygia guttata]
Length = 582
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/435 (54%), Positives = 316/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+ +
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + KK +V+AGCVPQ + L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 177
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 178 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 237
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 238 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPKLLWKLV-EVIPEGA-MLRLGMTNPPY 295
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 296 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 355
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETDEDF +T+ L++ Y+FP + I+QFYPRPGTPAA+M +VP+AV K+R+
Sbjct: 356 IATDIICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRPGTPAAKMPQVPAAVKKQRT 415
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ +F +++PY G +R+ +TE + D + V H Y QVLVP ++G V
Sbjct: 416 KDLSQLFHSYSPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEV 475
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 476 DIYEAGKHFMKGQPV 490
>gi|147902192|ref|NP_001084956.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Xenopus
laevis]
gi|82185344|sp|Q6NS26.1|CDKAL_XENLA RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|47122802|gb|AAH70521.1| MGC78779 protein [Xenopus laevis]
Length = 556
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/492 (50%), Positives = 339/492 (68%), Gaps = 27/492 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPI--NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT 58
++DIED+++ + P R N V K NKN + + T IPGT
Sbjct: 9 LDDIEDMVSATD---PKPHDRQSARKNIVPRARKRNKNNIQEEEPPADST------IPGT 59
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+ I+++T+GCSHN SD EYMAGQL+A+GY++T+ E+AD+WL+N+ + I
Sbjct: 60 QKIWIRTWGCSHNNSDGEYMAGQLAAYGYSITEQPEKADLWLLNSCTVKSPAEDHFRNSI 119
Query: 112 AKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K + A K +VV+GCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 120 KKAQEANKKVVVSGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKK 179
Query: 172 L-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV R
Sbjct: 180 DNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGELASYPVEELVDRAT 239
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEH
Sbjct: 240 QSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEH 297
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATD
Sbjct: 298 LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCIADFKRVVDFLKERVPGITIATD 357
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
IICGFPGETDEDF +T+ L++EYKFP + I+QFYPRPGTPAA+M++V + V K+R++EL+
Sbjct: 358 IICGFPGETDEDFKETLKLVEEYKFPSLFINQFYPRPGTPAAKMEQVLAHVKKRRTKELS 417
Query: 405 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+F ++ PY G+ +++ +TE + D + V H + Y QVLVP + +G VKI
Sbjct: 418 QLFHSYDPYDHKIGQKQQVLVTEESFDSQYYVAHNRFYEQVLVPKDPDFMGKMVEVKIFE 477
Query: 465 VGRWSVFGEVIK 476
G+ + G+ ++
Sbjct: 478 AGKHFMKGQPVQ 489
>gi|19922432|ref|NP_611207.1| CG6550 [Drosophila melanogaster]
gi|122087244|sp|Q7K4W1.1|CDKAL_DROME RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|7302795|gb|AAF57870.1| CG6550 [Drosophila melanogaster]
gi|15291579|gb|AAK93058.1| GH28477p [Drosophila melanogaster]
gi|220945770|gb|ACL85428.1| CG6550-PA [synthetic construct]
Length = 552
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/456 (53%), Positives = 320/456 (70%), Gaps = 28/456 (6%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
K KP +H++ IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ E
Sbjct: 57 KPKPTIHES----------VIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKE 105
Query: 95 EADIWLINT----QSAMDTLIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQ 147
EAD+WL+N+ + DT + +S K +VVAGCVPQG+ L G+S++GVQQ
Sbjct: 106 EADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQ 165
Query: 148 IDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGAC 199
IDRVVEVVEETLKGH V+LL KK L LPKVR+N +EI+ IN GCL C
Sbjct: 166 IDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQC 225
Query: 200 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 259
TYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL +
Sbjct: 226 TYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQL 285
Query: 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 319
V +P MLR+GMTNPP+ILEHL+E+A VL+HP VYSFLHVPVQSGSD+VL M RE
Sbjct: 286 VEVIPE--HCMLRVGMTNPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKRE 343
Query: 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 379
Y DF VVD L E VPG+ IATDIICGFP ET++DF +T+ L +Y+FP + I+QF+P
Sbjct: 344 YCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQFFP 403
Query: 380 RPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHT 439
RPGTPAA+M ++P+ +VKKR++ LT +F ++ PY G + + +TE++ D +H VGH
Sbjct: 404 RPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVTEVSHDKLHYVGHN 463
Query: 440 KGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
K Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 464 KSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499
>gi|380022483|ref|XP_003695074.1| PREDICTED: CDKAL1-like protein-like [Apis florea]
Length = 537
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 246/435 (56%), Positives = 316/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+ A D
Sbjct: 56 IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115
Query: 111 IAKCKSAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ ++ KK +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 168 HRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 235
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTG YGRDIG +LP LL ++ E+ P+G M RIGMTNPP+
Sbjct: 236 DRAKQAFEEGVCELWLTSEDTGTYGRDIGSSLPELLWKLI-EVIPNGCRM-RIGMTNPPY 293
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E++++LRHP VYSFLHVPVQSGSD VL+ M REYT +DF VV+ L E VPG+
Sbjct: 294 ILEHLEEMSKILRHPKVYSFLHVPVQSGSDQVLADMKREYTCADFERVVNFLRERVPGLT 353
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET++DF +T+ L ++YKFP + I+QF+PRPGTPAARM KVP+ VKKR+
Sbjct: 354 IATDIICGFPTETEKDFEETMKLCEKYKFPSLFINQFFPRPGTPAARMPKVPTQDVKKRT 413
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ L+ F++++PY V+ + +TEI+ D H VGH K Y QVL+P LG V
Sbjct: 414 KRLSEFFQSYSPYDNRIKLVQDVLVTEISHDKKHYVGHNKFYEQVLIPLKEEYLGKMIRV 473
Query: 461 KITSVGRWSVFGEVI 475
KI ++S+ GE I
Sbjct: 474 KIVETTKYSMKGEPI 488
>gi|397505362|ref|XP_003823235.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Pan paniscus]
gi|410220836|gb|JAA07637.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410329393|gb|JAA33643.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/489 (49%), Positives = 335/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|157129375|ref|XP_001661661.1| radical sam proteins [Aedes aegypti]
gi|108872257|gb|EAT36482.1| AAEL011435-PA [Aedes aegypti]
Length = 558
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/451 (54%), Positives = 322/451 (71%), Gaps = 18/451 (3%)
Query: 42 DNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
D + + L IPGT++IY+KT+GC+HN SDSEYMAGQL+++GY +T + +AD+WL+
Sbjct: 49 DAAVPEKSVLESVIPGTQSIYLKTWGCAHNNSDSEYMAGQLASYGYNITSDKSDADLWLL 108
Query: 102 NT----QSAMDTLIAKCKSAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEV 154
N+ + DT + ++A K +V+AGCVPQ + + G+SIVGV QIDRV EV
Sbjct: 109 NSCTVKNPSEDTFRNEIQAANKMGKHVVLAGCVPQAAPKSDYMHGLSIVGVHQIDRVTEV 168
Query: 155 VEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 207
VEETLKGH VRLL KKL P L LPKVR+N +EI+PIN GCL ACTYCKTK A
Sbjct: 169 VEETLKGHSVRLLQAKKLNGKRVAGPQLALPKVRKNPLIEIIPINSGCLNACTYCKTKFA 228
Query: 208 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 267
R L SY VE +V R V +GV E+WL+SEDTG YGRDIG +LP LL +VA +P DG
Sbjct: 229 RADLVSYPVEEIVQRAAHVFTEGVCEIWLTSEDTGTYGRDIGTSLPELLWQLVAVIP-DG 287
Query: 268 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 327
MLR+GMTNPP+ILEHL+E+A++L HP VYSFLHVP+QSGSD+VLS M REY SDF
Sbjct: 288 C-MLRLGMTNPPYILEHLEEMAKILVHPKVYSFLHVPIQSGSDSVLSDMKREYCRSDFEQ 346
Query: 328 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387
+VD L + VPG+ IATDIICGFP ET+EDF T+ L ++YKFP + I+QFYPRPGTPAA+
Sbjct: 347 IVDFLNDKVPGITIATDIICGFPTETEEDFEHTMTLCEKYKFPSLFINQFYPRPGTPAAK 406
Query: 388 MKKVPSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQV 445
M+++P+ VK R++ LT +F + PY+G + G +++ +TEI+ D H VGH K Y QV
Sbjct: 407 MQRIPADQVKVRTKRLTDLFYTYEPYVGKYVLGDRQKVLVTEISHDKKHYVGHNKCYEQV 466
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
L+P N+LG V+I + ++S+ +V++
Sbjct: 467 LLPMDKNLLGKLVEVEIVGITKFSMLAKVVQ 497
>gi|93277076|ref|NP_060244.2| threonylcarbamoyladenosine tRNA methylthiotransferase [Homo
sapiens]
gi|74747199|sp|Q5VV42.1|CDKAL_HUMAN RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|111309189|gb|AAI21021.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|111309398|gb|AAI21022.1| CDK5 regulatory subunit associated protein 1-like 1 [Homo sapiens]
gi|119575830|gb|EAW55426.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_b
[Homo sapiens]
gi|158256902|dbj|BAF84424.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/489 (49%), Positives = 335/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|114605652|ref|XP_001171194.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 4 [Pan troglodytes]
Length = 536
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/489 (49%), Positives = 335/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|332228849|ref|XP_003263603.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Nomascus leucogenys]
Length = 536
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/489 (49%), Positives = 335/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIHESG 483
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|380814044|gb|AFE78896.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|383419475|gb|AFH32951.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
gi|384947864|gb|AFI37537.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 315/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 418 KDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|355748266|gb|EHH52749.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
fascicularis]
Length = 576
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 315/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 418 KDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|395830637|ref|XP_003788426.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Otolemur garnettii]
Length = 583
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/435 (53%), Positives = 315/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVL+P + +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLIPKNSSFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYEAGKHFMKGQPV 491
>gi|426250880|ref|XP_004019161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 1 [Ovis aries]
gi|426250882|ref|XP_004019162.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 2 [Ovis aries]
gi|426250884|ref|XP_004019163.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
isoform 3 [Ovis aries]
Length = 578
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/489 (49%), Positives = 337/489 (68%), Gaps = 21/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + ++ S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPQDRHF----SRKHVVPKVRRRNTQKYLQEENRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SDAVL M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILHHPRVYAFLHIPVQSASDAVLMEMKREYCVADFKRVVDFLKDKVPGITIATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+ +
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSRI 422
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G+ +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYSPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPIFMGKMVEVDIYESG 482
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 483 KHFMKGQPV 491
>gi|109069747|ref|XP_001098819.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Macaca mulatta]
Length = 576
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 315/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 418 KDLSWVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|410958374|ref|XP_003985794.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Felis catus]
Length = 576
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 313/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKDPTFMGKMIEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|403368709|gb|EJY84195.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 642
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/467 (50%), Positives = 323/467 (69%), Gaps = 32/467 (6%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 71 NAQKFQNNVQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 130
Query: 96 ADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 148
AD L+N+ Q L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 131 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 190
Query: 149 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 208
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 191 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 250
Query: 209 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 251 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 308
Query: 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 328
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 309 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 368
Query: 329 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+
Sbjct: 369 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 428
Query: 389 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWITE--------IAADGIHLVG 437
KKVPS VKKRS +LT +F+++T Y+G E + +WI + + L+G
Sbjct: 429 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWIVSFDDRKKAMVKGELPQLMG 485
Query: 438 HTKGYVQVLVPSTGN---------MLGTSALVKITSVGRWSVFGEVI 475
HTK Y +V++ + ++G + +T +W + G ++
Sbjct: 486 HTKSYTKVVINQDADSLANQPAASLIGKCVKIHVTETHKWHISGYIL 532
>gi|194882251|ref|XP_001975226.1| GG22199 [Drosophila erecta]
gi|190658413|gb|EDV55626.1| GG22199 [Drosophila erecta]
Length = 557
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/436 (55%), Positives = 314/436 (72%), Gaps = 18/436 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ EEAD+WL+N+ + DT
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYRLS-GKEEADLWLLNSCTVKNPSEDTF 126
Query: 111 IAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ K K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNEIKLGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQQIDRVVEVVEETLKGNSVQLL 186
Query: 168 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
KK L LPKVR+N+ +EI+ IN GCL CTYCKTKHARG L SY E +
Sbjct: 187 QNKKKVHGRRVAGAPLSLPKVRKNQLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEV 246
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP
Sbjct: 247 VERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPP 304
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 YILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRQDFEHVVDFLRERVPGV 364
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDIICGFP ET+ DF +T+ L +Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR
Sbjct: 365 TIATDIICGFPTETEADFEETMTLCAKYRFPSLFINQFFPRPGTPAAKMERIPANLVKKR 424
Query: 400 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
++ LT +F ++ PY G + + +TE++ D +H VGH K Y QVL+P N+LGT
Sbjct: 425 TKRLTDLFYSYEPYAKRVGEIYTVLVTEVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVH 484
Query: 460 VKITSVGRWSVFGEVI 475
V+ITS ++S+ GE++
Sbjct: 485 VRITSASKFSMVGEIL 500
>gi|402783747|dbj|BAM37953.1| CDK5 regulatory subunit-associated protein 1-like 1 [Felis catus]
Length = 576
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 313/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPRGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL+ M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLTEMRREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M ++P+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMAQIPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKDPTFMGKMIEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|410905177|ref|XP_003966068.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Takifugu rubripes]
Length = 613
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 236/427 (55%), Positives = 306/427 (71%), Gaps = 16/427 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+ I+MKT+GCSHN SD EYMAGQL+A GY +TD+ EAD+WL+N+ +
Sbjct: 53 IPGTQKIWMKTWGCSHNNSDGEYMAGQLAASGYKITDDPIEADLWLLNSCTVKNPAEDHF 112
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + +K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 113 RNSIKKAQEQQKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 172
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 173 GQKKDGGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 232
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R +GV E+WL+SEDTGAYGRDIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 233 ERTRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 290
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLHVPVQS SD+VL M REY + DF+ VVD L E VPG+
Sbjct: 291 ILEHLEEMAKILSHPRVYAFLHVPVQSASDSVLMDMKREYCVGDFKRVVDFLKERVPGVT 350
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGET+EDF +T++L+K Y+FP + I+QFYPRPGTPAA+M+++P+ + K+R+
Sbjct: 351 IATDIICGFPGETEEDFQETLDLVKLYQFPSLFINQFYPRPGTPAAKMEQIPAHIKKQRT 410
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+EL+ +F ++ PY G +++ +TE + DG + V H K Y QVLVP G V
Sbjct: 411 KELSQLFHSYHPYDHKVGERQQVLVTEESFDGQYYVAHNKFYEQVLVPKRAEFKGKMVEV 470
Query: 461 KITSVGR 467
I G+
Sbjct: 471 DIYEAGK 477
>gi|7020375|dbj|BAA91102.1| unnamed protein product [Homo sapiens]
Length = 579
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/489 (49%), Positives = 335/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ I+ GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISISTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|403375394|gb|EJY87671.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/467 (50%), Positives = 323/467 (69%), Gaps = 32/467 (6%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + I++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKIFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 148
AD L+N+ Q L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 149 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 208
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 209 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 328
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370
Query: 329 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430
Query: 389 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWITE--------IAADGIHLVG 437
KKVPS VKKRS +LT +F+++T Y+G E + +WI + + L+G
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWIVSFDDRKKAMVKGELPQLMG 487
Query: 438 HTKGYVQVLVPSTGN---------MLGTSALVKITSVGRWSVFGEVI 475
HTK Y +V++ + ++G + +T +W + G ++
Sbjct: 488 HTKSYTKVVINQDADSLANQPAASLIGKCVKIHVTETHKWHISGYIL 534
>gi|410252052|gb|JAA13993.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291158|gb|JAA24179.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
gi|410291160|gb|JAA24180.1| CDK5 regulatory subunit associated protein 1-like 1 [Pan
troglodytes]
Length = 579
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/489 (49%), Positives = 334/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LDDIEDIVSQED---SKPQDRHFVRK-DVVPKVRRRNTQKYLQEEENSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYDHKIDERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 484 KHFMKGQPV 492
>gi|118373032|ref|XP_001019710.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila]
gi|89301477|gb|EAR99465.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Tetrahymena thermophila SB210]
Length = 574
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/494 (49%), Positives = 331/494 (67%), Gaps = 34/494 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGV----------NPKYNKNKPRLHDNHLSKTGS 50
+ DIED++AG R+ + PK + + D+ +
Sbjct: 6 LADIEDVIAGDVADDFIQKDRVKDRNIKKRPKKVKKVEEEPKQEELQEPEDDDEIKFDMP 65
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT------- 103
++ ++PGT+ +Y+KTFGCSHN SDSE+M GQL+ +GY L + ++A + L+N+
Sbjct: 66 VNNQVPGTQNVYVKTFGCSHNISDSEFMMGQLAEYGYNLCSDPKDAHLILVNSCTVKNPS 125
Query: 104 QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 163
Q A T++ K KKP+VVAGCVPQG R++ LE VS++G+ QIDRVVEVVEETLKG++
Sbjct: 126 QDAFMTIVKTYKHKKKPIVVAGCVPQGDRNIPGLEDVSVIGISQIDRVVEVVEETLKGNK 185
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
VRL +K LP+LDLPK+R CLG+CTYCKTKHARG LGSY E++V RV
Sbjct: 186 VRLYGKKTLPSLDLPKIR-------------CLGSCTYCKTKHARGKLGSYQPEAIVNRV 232
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+TV +GVKE+WL+SEDTGAYGRDIG ++ LL IV LP D MLR+GMTNPP+ILE
Sbjct: 233 KTVCEEGVKEIWLTSEDTGAYGRDIGTDISQLLRLIVEVLPND--VMLRVGMTNPPYILE 290
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HL+ ++ +LRHP V+SFLH+PVQ+ ++ VL MNREYT +F V D L++ VP M IAT
Sbjct: 291 HLQNMSTILRHPRVFSFLHIPVQAANNTVLENMNREYTCEEFEQVCDYLLKNVPNMTIAT 350
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 403
DIICGFPGET+ F+ T+ L+ +YKFP ++ISQFYPRPGT A +MKKVPS VK RS+++
Sbjct: 351 DIICGFPGETNAQFDDTLKLVDKYKFPILNISQFYPRPGTAAMKMKKVPSQDVKMRSKKI 410
Query: 404 TSVFEAFTPYLGMEGRVERIWIT--EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
T +F+ F + + G +RIWI E + LVGHTK Y +V++P +LG S ++K
Sbjct: 411 TELFDTFKRWDHLLGTTQRIWINDKEDKKGVLQLVGHTKQYAKVMLPFEEELLGKSVIIK 470
Query: 462 ITSVGRWSVFGEVI 475
+T V W + GE+I
Sbjct: 471 VTKVLTWHIEGEII 484
>gi|74003946|ref|XP_849433.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
isoform 3 [Canis lupus familiaris]
gi|402783749|dbj|BAM37954.1| CDK5 regulatory subunit-associated protein 1-like 1 [Canis lupus
familiaris]
Length = 578
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/486 (49%), Positives = 325/486 (66%), Gaps = 40/486 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ EAD+WL+N+ +
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASEADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ +G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYFKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ +N GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKANGKRLGGARLDLPKIRKNPLIEIISVNTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ATDIICGFPGETD+DF +TV L+++YKFP + I+QFYPRPGTPAA+M +VP+ V K+R+
Sbjct: 357 LATDIICGFPGETDQDFQETVKLVEDYKFPSLFINQFYPRPGTPAAKMVQVPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMIEV 476
Query: 461 KITSVGRWSVFGEVIK------------------------ILNQVDDKIASNRRISSQVR 496
I G+ + G+ + N+ ++S R S+ VR
Sbjct: 477 DIYESGKHFMKGQPVSDAKVYTPSISKPLAKGEVSGLTEGFRNRPRSHLSSARHPSAAVR 536
Query: 497 QDKCSS 502
+D SS
Sbjct: 537 RDSASS 542
>gi|158292783|ref|XP_314113.4| AGAP005211-PA [Anopheles gambiae str. PEST]
gi|157017155|gb|EAA09381.5| AGAP005211-PA [Anopheles gambiae str. PEST]
Length = 553
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 256/492 (52%), Positives = 334/492 (67%), Gaps = 24/492 (4%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK---NKPRLHDNHLSKTGSLSPKIPGTE 59
DIEDL+ S +P L V V K K N+P+ + + L IP T+
Sbjct: 11 DIEDLI--SLDDPSPAERYLNKKDVTVRTKRVKVRANRPK--ETSTVEKPLLDSVIPETQ 66
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IA 112
IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+ + DT I
Sbjct: 67 HIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKDSADLWVLNSCTVKNPSEDTFRNEIE 126
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
A K +VVAGCVPQ + L+G+S+VGVQQIDRV EVVEETLKGH VRLL KK+
Sbjct: 127 AAHQAGKHVVVAGCVPQAAPRSDYLKGLSVVGVQQIDRVAEVVEETLKGHSVRLLQAKKV 186
Query: 173 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
P L LPKVR+N +E++PIN GCL ACTYCKTK AR L SY V+ +V R +
Sbjct: 187 DGRKVAGPKLALPKVRKNPLIEVIPINSGCLNACTYCKTKFARADLVSYPVQEIVDRAQQ 246
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
V DGV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G M+R+GMTNPP+ILEHL
Sbjct: 247 VFQDGVCEIWLTSEDTGTYGRDIGSSLPELLWQLV-EVIPEGC-MMRLGMTNPPYILEHL 304
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
E+A++L HP VYSFLH+PVQSGSDA+L M REY + DF +VD L VPG+ IATDI
Sbjct: 305 DEMAKILSHPRVYSFLHIPVQSGSDAILGEMRREYCVKDFERMVDFLRAQVPGITIATDI 364
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFPGET+ DF+ T+ L ++Y+FP + I+QF+PRPGTPAA+M KVP+ VK R++ LT
Sbjct: 365 ICGFPGETEADFDDTLALCEKYQFPSLFINQFFPRPGTPAAKMTKVPANEVKTRTKRLTD 424
Query: 406 VFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+F ++ PY E G + + +TEI+ D H VGH K Y Q+L+P N+LG V+IT
Sbjct: 425 LFHSYEPYKKYEAGTKQTVLVTEISHDRKHFVGHNKFYEQILLPMHNNLLGKQVEVEITG 484
Query: 465 VGRWSVFGEVIK 476
++S+FG+VI+
Sbjct: 485 CTKFSMFGKVIQ 496
>gi|403356675|gb|EJY77936.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Oxytricha trifallax]
Length = 644
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/467 (49%), Positives = 323/467 (69%), Gaps = 32/467 (6%)
Query: 36 NKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
N + +N + + K+PG + +++KT+GCSHN SDSEYMAG L+ +GY + DN +E
Sbjct: 73 NAQKFQNNIQDQPFEQNEKVPGAQKVFVKTYGCSHNISDSEYMAGLLAEYGYQIVDNMDE 132
Query: 96 ADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 148
AD L+N+ Q L+ K KKP++V+GCVPQG R++K LE VS++G+ QI
Sbjct: 133 ADACLLNSCTVKNPSQEKFVNLVLSAKGKKKPVIVSGCVPQGDRNIKGLEDVSVIGITQI 192
Query: 149 DRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 208
DRVVEVVEE LKGH V+LL +K LP LDLPK+R+N+ VEI+P++ GCLG+CTYCKT+HAR
Sbjct: 193 DRVVEVVEEALKGHNVKLLAKKDLPILDLPKIRKNQLVEIIPLSTGCLGSCTYCKTRHAR 252
Query: 209 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268
G LGSY ++V R RT I +GV E+WL+SEDTGAYGRDIG +LP LL +++A +P
Sbjct: 253 GKLGSYDPNAIVERARTAIEEGVMEIWLTSEDTGAYGRDIGTSLPELLKSLIAVMPK--H 310
Query: 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 328
TMLR+GMTNPP+ILEHL+ +A++L HP VYSFLHVPVQ+ S++VL MNREY + +F V
Sbjct: 311 TMLRVGMTNPPYILEHLQAMADILNHPRVYSFLHVPVQAASNSVLDKMNREYLIEEFEEV 370
Query: 329 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388
D L+E V M +ATDIICGFP ET+ DF++T+ L+ +YKFP ++ISQFYPRPGT AA+
Sbjct: 371 CDFLVENVKDMTLATDIICGFPTETEADFDETLKLVGKYKFPVLNISQFYPRPGTVAAKW 430
Query: 389 KKVPSAVVKKRSRELTSVFEAFTP---YLGMEGRVERIWITE--------IAADGIHLVG 437
KKVPS VKKRS +LT +F+++T Y+G E + +WI + + L+G
Sbjct: 431 KKVPSQDVKKRSNDLTKLFDSYTTNNHYIGTE---QLVWIVSFDDRKKAMVKGELPQLMG 487
Query: 438 HTKGYVQVLVPSTGN---------MLGTSALVKITSVGRWSVFGEVI 475
HTK Y +V++ + ++G + +T +W + G ++
Sbjct: 488 HTKSYTKVVINQDADSLANQPAASLIGKCVKIHVTETHKWHISGYIL 534
>gi|198423331|ref|XP_002121617.1| PREDICTED: similar to CDK5 regulatory subunit associated protein
1-like 1 [Ciona intestinalis]
Length = 516
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/441 (53%), Positives = 316/441 (71%), Gaps = 17/441 (3%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINT----- 103
++ IP T+TI++KT+GC+HN SDSEYMAGQL+++GY +T+N + AD+WL+N+
Sbjct: 55 TIQSNIPATQTIFVKTWGCTHNSSDSEYMAGQLASYGYNVVTENGDNADLWLLNSCTVKN 114
Query: 104 --QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 161
+ +I+K +S K +V+AGCV QG+ ++G+SI+GVQQIDRVVEVVEETLKG
Sbjct: 115 PAEDHFRNMISKAQSLNKQVVLAGCVSQGAPKQSYIQGLSIIGVQQIDRVVEVVEETLKG 174
Query: 162 HEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
+ VRLL +KK +LDLPK+RRN F+EI+ IN GCL +CTYCKTKHARG+LGSY
Sbjct: 175 NTVRLLKQKKENGRKIGGASLDLPKIRRNPFIEIISINTGCLNSCTYCKTKHARGNLGSY 234
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
V +V R +GV E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+G
Sbjct: 235 PVAEIVQRAIQSFGEGVVEIWLTSEDTGAYGRDIGTSLPELLWELVKVIPV--GCMLRVG 292
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
MTNPP+IL+HL+E+ ++L HP VYSFLHVPVQSGSD L M REYT SDF VVDTL
Sbjct: 293 MTNPPYILDHLEEMGKILNHPNVYSFLHVPVQSGSDQTLHEMRREYTASDFELVVDTLRA 352
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
VPG+ IATDIICGFP ETDEDF T+ L ++YKFP + I+QF+PRPGTPAARM ++
Sbjct: 353 SVPGISIATDIICGFPTETDEDFEDTMTLCEKYKFPSLFINQFFPRPGTPAARMPQIHRQ 412
Query: 395 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+KKR++ L+ +F ++ PY G+++++ +TEIA D IH VGH K Y QVL+P ++
Sbjct: 413 EIKKRTKRLSELFRSYEPYGHQLGKIQKVLVTEIAHDQIHYVGHNKYYEQVLIPMDEDLT 472
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G V+I G+ + G+ I
Sbjct: 473 GKMFEVEIVETGKHFLKGKRI 493
>gi|300794023|ref|NP_001179620.1| CDK5 regulatory subunit-associated protein 1-like 1 [Bos taurus]
gi|296474090|tpg|DAA16205.1| TPA: CDK5 regulatory subunit associated protein 1-like 1 [Bos
taurus]
Length = 578
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/435 (53%), Positives = 314/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+EL+ +F ++ PY G+ +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KELSRIFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|149731822|ref|XP_001494687.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Equus caballus]
Length = 578
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 313/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|291395737|ref|XP_002714277.1| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1
[Oryctolagus cuniculus]
Length = 571
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/435 (53%), Positives = 316/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKENGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL AM REY ++DF++VVD L E VPG+
Sbjct: 297 ILEHLQEMAKILNHPRVYAFLHIPVQSASDSVLMAMKREYCVADFKSVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ + K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAHMKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSQVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|350586429|ref|XP_003128247.3| PREDICTED: CDK5 regulatory subunit associated protein 1-like 1 [Sus
scrofa]
Length = 578
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/489 (49%), Positives = 331/489 (67%), Gaps = 21/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED++ S P V + + L D + + S IPG +
Sbjct: 10 LDDIEDIV--SQEDSKPQDRHFARKQVVPKVRRRNTQKYLQDENSPPSDST---IPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMDMKREYCVADFKRVVDFLKDKVPGITIATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRV 422
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYESG 482
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 483 KHFMKGQPV 491
>gi|321479315|gb|EFX90271.1| hypothetical protein DAPPUDRAFT_300126 [Daphnia pulex]
Length = 560
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 255/495 (51%), Positives = 335/495 (67%), Gaps = 30/495 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK------ 54
++DIED++ G G A NAVG K N + +KT + PK
Sbjct: 7 LDDIEDIV-GEGDLTALERSVARSNAVGKRVKKTPN-----NKDPAKTNKVIPKVEENGS 60
Query: 55 -IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSA 106
IPGT+ I++KT+GC+HN SDSEYMAGQL+A+GY+LTD EAD+WL+N+ +
Sbjct: 61 IIPGTQKIWVKTWGCAHNNSDSEYMAGQLAAYGYSLTDEKYEADLWLLNSCTVKTPAEDH 120
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
I ++ P+VVAGCVPQG L+G+SI+GVQQIDRVVEVVEETLKGH VRL
Sbjct: 121 FKNEIDDGRARGTPVVVAGCVPQGQPKANYLQGLSIIGVQQIDRVVEVVEETLKGHSVRL 180
Query: 167 LHRKKLP--------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
L KK +L LPK+R+N +EI+PIN GCL CTYCKTKHARG LGSY E
Sbjct: 181 LGTKKDAEKKKTGGASLLLPKIRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEE 240
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V R +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ PDG MLR+GMTNP
Sbjct: 241 IVARAIQSFQEGVCEIWLTSEDTGAYGRDIGSSLPELLRQLV-QVIPDG-CMLRLGMTNP 298
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
P+ILEHL+ IAE+L HP VY+FLH+PVQSGSD VL+ M REY ++DF VV+ L E VPG
Sbjct: 299 PYILEHLEAIAEILNHPRVYAFLHLPVQSGSDCVLTDMKREYCVADFERVVNFLRERVPG 358
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
+ IATDIICGFP ET++DF+ T+ L +++FP + I+QF+PR GTPA RM++VP+ VK
Sbjct: 359 ISIATDIICGFPTETEQDFDLTMELCSKHRFPSLFINQFFPRVGTPAYRMERVPTKQVKN 418
Query: 399 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
R++ L+ +F+++ PY G+ + + +T+I+ D + VGH K YVQVLVP N +G
Sbjct: 419 RTKRLSELFKSYQPYDDQVGQRQSVLVTDISHDKNYYVGHNKEYVQVLVPMEPNYMGKMV 478
Query: 459 LVKITSVGRWSVFGE 473
V ITS ++S+ E
Sbjct: 479 EVLITSASKFSLMSE 493
>gi|403270819|ref|XP_003927359.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Saimiri boliviensis boliviensis]
Length = 578
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 314/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYLIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G +
Sbjct: 477 DIYESGKHFMKGRPV 491
>gi|344289532|ref|XP_003416496.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Loxodonta africana]
Length = 578
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 314/435 (72%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+ + +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITEKASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+++P+ V K+R+
Sbjct: 357 VATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQIPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE++ D V H + Y QVLVP + +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEVSFDSKFYVAHNRFYEQVLVPKNPSFMGKMVKV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|322800811|gb|EFZ21687.1| hypothetical protein SINV_11782 [Solenopsis invicta]
Length = 538
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 252/489 (51%), Positives = 332/489 (67%), Gaps = 24/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + V PK K + +S+ LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYSSRKHITVRPKRRKQE------QVSQPSVLSSVIPGTQT 60
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY+KT+GC+HN SD+EYMAGQL+ +GY LT++ +AD+WL+N+ + I
Sbjct: 61 IYVKTWGCTHNSSDTEYMAGQLATYGYNLTEDKLKADLWLLNSCTVKNPAEDQFRNEIEH 120
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
K+ K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 121 GKNIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLKQKKDS 180
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 181 GKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 240
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V ++ PDG M+R+GMTNPP+ILEHL
Sbjct: 241 FEEGVCELWLTSEDTGAYGRDIGTNLPELLWQLV-DVIPDGC-MMRVGMTNPPYILEHLD 298
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L+HP VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IATDII
Sbjct: 299 EMAKILQHPRVYSFLHIPVQSGSDQVLADMKREYTRAEFEHVVNFLSERVPGLTIATDII 358
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP ET+ DF +T+ L ++YKFP + I+Q++PRPGTPAARM KVP+ VK R++ L+
Sbjct: 359 CGFPTETEMDFEETMTLCQKYKFPSLFINQYFPRPGTPAARMLKVPAQKVKARTKRLSEF 418
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F+++ Y G +++ +TE++ D H VGH K Y QVL+P +G VKI
Sbjct: 419 FQSYELYGHKVGLQQKVLVTEVSHDKQHYVGHNKFYEQVLIPMKQEYMGKMIDVKIKEAT 478
Query: 467 RWSVFGEVI 475
++S+ GE I
Sbjct: 479 KFSMKGEPI 487
>gi|349604029|gb|AEP99693.1| CDK5 regulatory subunit-associated protein 1-like 1-like protein
[Equus caballus]
Length = 578
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 313/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKTQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGAPLDLPKIRKNPRIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFREGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGET+EDF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETNEDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKVGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|307207026|gb|EFN84849.1| CDKAL1-like protein [Harpegnathos saltator]
Length = 542
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/441 (54%), Positives = 314/441 (71%), Gaps = 17/441 (3%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSA 106
LS IPGT+T+Y+KT+GC+HN SD+EYMAGQL+A GY L D+ +AD+WL+N+ A
Sbjct: 46 LSSIIPGTQTVYVKTWGCTHNSSDAEYMAGQLAAQGYNLIDDKLKADLWLLNSCTVKNPA 105
Query: 107 MDTL---IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE 163
D I + A K +VVAGCVPQG+ L+G+SI+GVQQIDRVVEVVEETLKGH
Sbjct: 106 EDQFRNEIENGRKAGKHIVVAGCVPQGAPKSPFLKGLSIIGVQQIDRVVEVVEETLKGHT 165
Query: 164 VRLLHRKKLPA--------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
VR L KK L+LPK+R+N +EI+ I+ GCL CTYCKTKHARG LGSY
Sbjct: 166 VRFLRTKKNSTGRKIGGSTLNLPKIRKNPRIEIIAISTGCLNQCTYCKTKHARGQLGSYP 225
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 275
+ +V R +GV E+W++SEDTGAYGRDIG NLP LL +V +P S M+RIGM
Sbjct: 226 PDEIVARALQAFEEGVCELWITSEDTGAYGRDIGTNLPELLWKLVDVIP--ESCMMRIGM 283
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
TNPP+ILEHL EIA++LRHP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E
Sbjct: 284 TNPPYILEHLDEIAKILRHPKVYSFLHIPVQSGSDQVLADMKREYTRADFEHVVNYLRER 343
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
VP + IATDIICGFP ET+E+F +T+ L ++YKFP + I+QF+PRPGTPAARM ++P+
Sbjct: 344 VPDLTIATDIICGFPSETEENFEETLTLCRKYKFPSLFINQFFPRPGTPAARMPRIPTQQ 403
Query: 396 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
VK R+++LT +F ++ PY G++ + +TE+A D +H VGH K Y QVL+P +G
Sbjct: 404 VKARTKKLTELFYSYEPYENQVGKLCCVLVTEVAHDKLHYVGHNKFYGQVLLPKEEEYMG 463
Query: 456 TSALVKITSVGRWSVFGEVIK 476
LV+IT ++S+ E ++
Sbjct: 464 MMILVRITEATKFSMKAEYVE 484
>gi|291238003|ref|XP_002738926.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Saccoglossus kowalevskii]
Length = 544
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/446 (53%), Positives = 317/446 (71%), Gaps = 16/446 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG +++Y+KT+GCSHN SDSEYMAGQL+++GY +T+ E AD+WL+N+ +
Sbjct: 46 IPGCQSVYVKTWGCSHNNSDSEYMAGQLASYGYKITETEEAADLWLLNSCTVKTPAEQHF 105
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L + GVS+VGVQQIDR+VEVVEET KGH VRL
Sbjct: 106 QNSIIKAREQNKYMVLAGCVPQAQPKLDYINGVSVVGVQQIDRIVEVVEETFKGHTVRLF 165
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK L+LPK+R+N +EI+ IN GCL ACTYCKTK+ARG LGSY LV
Sbjct: 166 GQKKKDGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNACTYCKTKYARGELGSYQPSELV 225
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYG+DIGV + LL +V E+ PDG M+RIGMTNPP+
Sbjct: 226 ARAKQSFEEGVCELWLTSEDTGAYGKDIGVTIVELLWQLV-EVIPDGC-MMRIGMTNPPY 283
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+EI+++L+HP VYSFLHVPVQSGSD+VL M REY + DF+ V + L + VPG+
Sbjct: 284 ILEHLEEISKILKHPRVYSFLHVPVQSGSDSVLMDMKREYCVDDFKHVCNFLKKRVPGVT 343
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ETDEDF++T+ L++EYKFP + I+Q++PRPGTP+A+M +VP+ VKKR+
Sbjct: 344 IATDIICGFPTETDEDFDETMQLVEEYKFPSLFINQYFPRPGTPSAKMTRVPTREVKKRT 403
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ +F+ + PY G + + +TE + DG V H K Y QVLVP N+LG V
Sbjct: 404 KKLSQLFQDYRPYDHKVGEEQHVLVTEDSHDGRFYVAHNKFYDQVLVPKEENLLGKMIKV 463
Query: 461 KITSVGRWSVFGEVIKILNQVDDKIA 486
KITS G+ + G+++K V IA
Sbjct: 464 KITSTGKHYLIGDILKDEETVTPSIA 489
>gi|149045300|gb|EDL98386.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 578
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 312/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFLKGQPV 491
>gi|392333847|ref|XP_003753012.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
gi|149045301|gb|EDL98387.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_d [Rattus norvegicus]
Length = 520
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 234/435 (53%), Positives = 312/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFLKGQPV 491
>gi|296197315|ref|XP_002806724.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase [Callithrix jacchus]
Length = 579
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/489 (49%), Positives = 333/489 (68%), Gaps = 20/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ + P R + V PK + + + + IPG +
Sbjct: 10 LEDIEDIVSQED---SKPQERHFVRR-DVVPKARRRNTQKYLQEEEDSPPSDSTIPGIQK 65
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 66 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 125
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+A CVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 126 AQEENKKIVLAVCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 185
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 186 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQS 245
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 246 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 303
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLHVPVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 304 EMAKILNHPRVYAFLHVPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDII 363
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA++++VP+ V K+R+++L+ V
Sbjct: 364 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKIEQVPAQVKKQRTKDLSRV 423
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F +++PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 424 FHSYSPYHHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 483
Query: 467 RWSVFGEVI 475
+ + G +
Sbjct: 484 KHFMKGRPV 492
>gi|26349829|dbj|BAC38554.1| unnamed protein product [Mus musculus]
gi|148700457|gb|EDL32404.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_d
[Mus musculus]
Length = 520
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/489 (49%), Positives = 333/489 (68%), Gaps = 21/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 482
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 483 KHFLKGQPV 491
>gi|395511895|ref|XP_003760186.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Sarcophilus harrisii]
Length = 577
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/435 (53%), Positives = 312/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRVGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKQVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQDTMKLVEDYKFPSLFINQFYPRPGTPAAKMQQVPAHVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ +F ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPMFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|21617853|ref|NP_653119.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Mus
musculus]
gi|81879575|sp|Q91WE6.1|CDKAL_MOUSE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|16359212|gb|AAH16073.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56205715|emb|CAI24677.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56238093|emb|CAI25816.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800055|emb|CAI35240.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|56800204|emb|CAI35144.1| CDK5 regulatory subunit associated protein 1-like 1 [Mus musculus]
gi|148700456|gb|EDL32403.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Mus musculus]
Length = 578
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/489 (49%), Positives = 333/489 (68%), Gaps = 21/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F ++ PY G +++ +TE + D V H + Y QVLVP +G V I G
Sbjct: 423 FHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESG 482
Query: 467 RWSVFGEVI 475
+ + G+ +
Sbjct: 483 KHFLKGQPV 491
>gi|291190604|ref|NP_001167148.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
gi|223648364|gb|ACN10940.1| CDK5 regulatory subunit-associated protein 1-like 1 [Salmo salar]
Length = 562
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/427 (54%), Positives = 301/427 (70%), Gaps = 16/427 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+M+T+GCSHN SD EYMAGQL+A GY +T++ EAD+WL+N+ +
Sbjct: 55 IPGMQKIWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDHF 114
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +VVAGCVPQ + L+G+SI+GVQQIDRVVEVV+E +KGH VRLL
Sbjct: 115 RNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLL 174
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY VE LV
Sbjct: 175 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELV 234
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R +GV E+WL+SEDTGAYG+DIG +LP LL +V E+P MLR+GMTNPP+
Sbjct: 235 ERARQSFQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPE--GAMLRLGMTNPPY 292
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E++++L HP VY+FLHVPVQS SD+VL M REY DFR V D L + VPG+
Sbjct: 293 ILEHLEEMSKILNHPRVYAFLHVPVQSASDSVLMDMKREYCADDFRRVADFLKDKVPGIT 352
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD DF +T +L+KEY+FP + I+QFYPRPGTPAA+M +VP+ + K+R+
Sbjct: 353 IATDIICGFPGETDADFQETCDLVKEYRFPSLFINQFYPRPGTPAAKMDQVPAQLKKQRT 412
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+EL+++F ++ PY G +++ +TE + D + V H K Y QVLVP G V
Sbjct: 413 KELSALFHSYNPYHHKIGETQQVLVTEESFDAQYYVAHNKYYEQVLVPKRSEFKGKMIEV 472
Query: 461 KITSVGR 467
+I G+
Sbjct: 473 EIFEAGK 479
>gi|270014918|gb|EFA11366.1| hypothetical protein TcasGA2_TC011523 [Tribolium castaneum]
Length = 545
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/433 (55%), Positives = 307/433 (70%), Gaps = 16/433 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+ +
Sbjct: 64 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 123
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 124 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 183
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 184 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 243
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 244 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 301
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM
Sbjct: 302 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 361
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET++DF T++L ++YKFP + I+QF+PRPGTPAA + ++P+ VK R+
Sbjct: 362 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRT 421
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F ++ PY G V+ + +TE++ D H VGH K Y QVLVP +G V
Sbjct: 422 KRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLVPKDEKYMGKLVTV 481
Query: 461 KITSVGRWSVFGE 473
KI S ++S+ GE
Sbjct: 482 KIVSATKFSMTGE 494
>gi|332024358|gb|EGI64557.1| CDKAL1-like protein [Acromyrmex echinatior]
Length = 539
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/489 (50%), Positives = 330/489 (67%), Gaps = 22/489 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIEDL+A P + + PK K +S+ LS IPGT+T
Sbjct: 9 IEDIEDLIASQDI--TPKERYNSRKHITIRPKRRKQL----QEEVSQPSILSSIIPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY+KT+GC+HN SD+EYM GQL+++GY LT++ +AD+WL+N+ + I
Sbjct: 63 IYVKTWGCTHNSSDTEYMTGQLASYGYNLTEDKLKADLWLLNSCTVKSPAEDQFRNEIEY 122
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L +KK
Sbjct: 123 GKKIGKHVVVAGCVPQGAPKSSFLQGLSVIGVQQIDRVVEVVEETLKGNTVRFLQQKKDL 182
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+L+LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V R +
Sbjct: 183 GKKTGGASLNLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERAKQA 242
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL ++ ++ PDG M+RIGMTNPP+ILEHL
Sbjct: 243 FEEGVCELWLTSEDTGAYGRDIGTNLPKLLWQLI-DVIPDGC-MMRIGMTNPPYILEHLD 300
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+ ++LRH VYSFLH+PVQSGSD VL+ M REYT ++F VV+ L E VPG+ IATDII
Sbjct: 301 EMTKILRHSKVYSFLHIPVQSGSDHVLADMKREYTCAEFEHVVNFLSERVPGLTIATDII 360
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP ET+ DF +T+ L ++YKFP + I+QF+ RPGTPAARM KVP+ VK R++ L+
Sbjct: 361 CGFPTETEMDFEETMTLCQKYKFPSLFINQFFSRPGTPAARMPKVPAQKVKTRTKRLSEF 420
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F+++ PY G ++++ +TE++ D H VGH K Y QVL+P +G V+I
Sbjct: 421 FQSYEPYGHKVGLIQKVLVTEVSHDKQHYVGHNKFYEQVLIPLKQGYMGKMIDVRIIEAT 480
Query: 467 RWSVFGEVI 475
++S+ G+ I
Sbjct: 481 KFSMKGDPI 489
>gi|91094359|ref|XP_970283.1| PREDICTED: similar to GA19679-PA [Tribolium castaneum]
Length = 548
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/433 (55%), Positives = 307/433 (70%), Gaps = 16/433 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+ IY+KT+GC+HN SD+EYMAGQL+A+GY LT+N +EAD+WL+N+ +
Sbjct: 67 IPGTQKIYIKTWGCAHNSSDTEYMAGQLTAYGYKLTENKKEADLWLLNSCTVKNPAEDHF 126
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I + K K +VVAGCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 127 RNQIQEAKELGKYIVVAGCVPQGAPKASFIQGLSIIGVQQIDRVVEVVEETLKGNTVKLL 186
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E +V
Sbjct: 187 GTKKEQGKKIGGASLLLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIV 246
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+
Sbjct: 247 ERAKQAFEEGVVEIWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPY 304
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL E+A+++ HP VYSFLHVPVQSGSD VLS M REY DF VVD L +PGM
Sbjct: 305 ILEHLSEVAKIMNHPRVYSFLHVPVQSGSDQVLSDMKREYFRKDFEHVVDFLQSQIPGMT 364
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET++DF T++L ++YKFP + I+QF+PRPGTPAA + ++P+ VK R+
Sbjct: 365 IATDIICGFPTETEKDFEDTLSLCEKYKFPSLFINQFFPRPGTPAALLPRIPAQEVKGRT 424
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F ++ PY G V+ + +TE++ D H VGH K Y QVLVP +G V
Sbjct: 425 KRLTDLFYSYQPYDKKVGEVQEVLVTEVSHDKKHYVGHNKFYEQVLVPKDEKYMGKLVTV 484
Query: 461 KITSVGRWSVFGE 473
KI S ++S+ GE
Sbjct: 485 KIVSATKFSMTGE 497
>gi|443735052|gb|ELU18907.1| hypothetical protein CAPTEDRAFT_20043 [Capitella teleta]
Length = 561
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/525 (47%), Positives = 340/525 (64%), Gaps = 25/525 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNK-NKPRLHDNHLSKTGSLSPKIPGTE 59
++DIED+ + + G R + A + +K N P S+ IPGT+
Sbjct: 12 IDDIEDIFSKTSEGIPREKVRKHVVARARKQRASKRNAPEASQVQHPLADSV---IPGTQ 68
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
IY+KT+GC+HN SD EYMAGQL+A+GY +T++ + A +WL+N+ + I
Sbjct: 69 NIYVKTWGCAHNSSDGEYMAGQLAAYGYTITEDKDSAHLWLLNSCTVKNPAEDHFRNEIT 128
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K K K +V++GCVPQG+ ++G+S++GV QIDRVVEVVEETLKG+ VRL +KK
Sbjct: 129 KAKEQGKYVVISGCVPQGAPRASYIQGLSVIGVHQIDRVVEVVEETLKGNAVRLFGQKKE 188
Query: 173 P-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
AL LPK+RRN +EI+ IN GCL ACTYCKTKHARG LGSY +E +V R +
Sbjct: 189 AGKKLGGAALSLPKIRRNPLIEIIAINTGCLNACTYCKTKHARGELGSYPIEQIVNRAKQ 248
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+GV E+WL+SED GAYG DIGV LP LL +V E PDG+ M+R+GMTNPP+ILEHL
Sbjct: 249 SFEEGVVEIWLTSEDLGAYGIDIGVTLPQLLWQLV-ETIPDGA-MMRLGMTNPPYILEHL 306
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+E+A++L+HP VYSFLHVPVQSGSDAVL M REY +DF VVD L E VP + +ATDI
Sbjct: 307 EEMAKILKHPRVYSFLHVPVQSGSDAVLGDMKREYCRADFMHVVDFLKERVPNITVATDI 366
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFP ET+EDF++T+ L+++Y FP + I+QF+PRPGTPAA+M+++P VKKRS++LT
Sbjct: 367 ICGFPTETEEDFDETMTLVEKYHFPSLFINQFFPRPGTPAAKMERIPPPQVKKRSKQLTE 426
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+F ++ Y G+ + + +TEI+ DG + VGH K Y QVLVP ++G V I
Sbjct: 427 LFHSYQTYGNQVGQTQTVLVTEISHDGNYFVGHNKHYDQVLVPKETELIGKCVDVVIVEA 486
Query: 466 GRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESS 510
G+ + E+ D K+ + + K S Q SS
Sbjct: 487 GKHFMKAEL-----ATDLKLRRPENVPPPLVHGKVSGFDEQVSSS 526
>gi|425893217|gb|AFY09824.1| CDK5 regulatory subunit associated protein 1-like 1 [Rattus
norvegicus]
Length = 578
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/435 (53%), Positives = 311/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K K +V+AGCVPQ L+G+SI+G QQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGAQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSRVFHSYNPYDHKIGGRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFLKGQPV 491
>gi|195123861|ref|XP_002006420.1| GI21033 [Drosophila mojavensis]
gi|193911488|gb|EDW10355.1| GI21033 [Drosophila mojavensis]
Length = 554
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/435 (56%), Positives = 317/435 (72%), Gaps = 17/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ +Y+KT+GC+HN SDSEYMAGQL+A+GY L+ + +EAD+WL+N+ + DT
Sbjct: 70 IPGTQKVYVKTWGCAHNNSDSEYMAGQLAAYGYNLS-SKDEADLWLLNSCTVKNPSEDTF 128
Query: 111 IAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ +S K +VVAGCVPQG+ L G+SI+GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 129 RNEIESGMRNGKHVVVAGCVPQGAPKSDYLRGLSIIGVQQIDRVVEVVEETLKGHSVRLL 188
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY +V
Sbjct: 189 QNKKVQGRRVAGAPLSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPAEIV 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R +G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 249 ERARQSFDEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPE--HCMLRVGMTNPPY 306
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+
Sbjct: 307 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRSRVPGLT 366
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+EDF +T++L K+Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 367 IATDIICGFPTETEEDFEETMSLCKKYQFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 426
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F ++ PY G EG+V + +TEI+ D +H VGH K Y QVL+P N+LGT V
Sbjct: 427 KRLTDLFYSYEPYAGREGQVYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVRV 486
Query: 461 KITSVGRWSVFGEVI 475
+IT ++S+ E++
Sbjct: 487 RITGTSKFSMMAEIL 501
>gi|413918350|gb|AFW58282.1| hypothetical protein ZEAMMB73_571996 [Zea mays]
Length = 318
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/326 (74%), Positives = 272/326 (83%), Gaps = 23/326 (7%)
Query: 1 MEDIEDLLAGSGGGGA--PPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPK---- 54
MEDIED+L +G G PPG RLP+ AV V PK S+ P+
Sbjct: 1 MEDIEDVLGAAGLSGGGAPPGLRLPLAAVAVKPKRRS----------SRVAQAPPQPEAG 50
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KTFGCSHNQSDSEYM+GQLSAFGYA+T++ E AD+WLINT QSAM
Sbjct: 51 IPGTQTIYVKTFGCSHNQSDSEYMSGQLSAFGYAITEDPEGADLWLINTCTVKNPSQSAM 110
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
TLI+KCK+A KPLVVAGCVPQGS+ LKELEG+SI+GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 111 TTLISKCKNANKPLVVAGCVPQGSQGLKELEGISIIGVQQIDRVVEVVEETLKGHEVRLL 170
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT++SLV RV+TV+
Sbjct: 171 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVDRVKTVV 230
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
++GV+E+WLSSEDTGAYGRDIG NLP LLNAIVAELP D STMLRIGMTNPPFILEHLKE
Sbjct: 231 SEGVREIWLSSEDTGAYGRDIGTNLPNLLNAIVAELPVDQSTMLRIGMTNPPFILEHLKE 290
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVL 313
IA VL HPCVYSFLHVPVQSGSD+VL
Sbjct: 291 IAAVLCHPCVYSFLHVPVQSGSDSVL 316
>gi|334325985|ref|XP_001375874.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1
[Monodelphis domestica]
Length = 579
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/435 (53%), Positives = 312/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N EAD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENPSEADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEEDKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKSNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGLT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF T+ L+++YKFP + I+QFYPRPGTPAA++++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQDTLKLVEDYKFPSLFINQFYPRPGTPAAKIQQVPAHVKKQRT 416
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ +F ++ PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 417 KDLSQLFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPMFMGKMVEV 476
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 477 DIYESGKHFMKGQPV 491
>gi|312384872|gb|EFR29498.1| hypothetical protein AND_01451 [Anopheles darlingi]
Length = 526
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/437 (54%), Positives = 312/437 (71%), Gaps = 17/437 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IP T+ IYMKT+GC+HN SD+EYMAGQL+ +GY LT + + AD+W++N+ + DT
Sbjct: 62 IPETQQIYMKTWGCAHNTSDTEYMAGQLAQYGYNLTSDKKAADLWVLNSCTVKNPSEDTF 121
Query: 111 ---IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I A K +VVAGCVPQ + L G+S+VGVQQIDRV EVVEETLKGH VRLL
Sbjct: 122 RNEIEAAHRAGKHVVVAGCVPQAAPRSDYLHGLSVVGVQQIDRVAEVVEETLKGHSVRLL 181
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ P L LPKVR+N +E++PIN GCL +CTYCKTK AR L SY V+ +V
Sbjct: 182 QAKKVNGRKVAGPKLALPKVRKNPLIEVIPINSGCLNSCTYCKTKFARADLVSYPVQEIV 241
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + V +GV E+WL+SEDTG YGRDI +LP LL +V E+ P+G M+R+GMTNPP+
Sbjct: 242 ERAQQVFEEGVCEIWLTSEDTGTYGRDIDSSLPELLWKLV-EVIPEGC-MMRLGMTNPPY 299
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL HP VYSFLH+PVQSGSD +L M REY + +F VVD L E VPG+
Sbjct: 300 ILEHLEEMAKVLAHPRVYSFLHIPVQSGSDTILGEMKREYCVQEFERVVDFLREKVPGIT 359
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGET+ DF TV L K+Y+FP + I+QF+PRPGTPAA+M++VP+ VK R+
Sbjct: 360 IATDIICGFPGETETDFQGTVALCKKYEFPSLFINQFFPRPGTPAAKMERVPANEVKTRT 419
Query: 401 RELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
+ LT +F ++ PY G ++ + +TEI+ D H VGH K Y QVL+P N+LG
Sbjct: 420 KRLTDLFHSYEPYKKYTPGTIQTVLVTEISHDRKHYVGHNKFYEQVLLPMHNNLLGKQVE 479
Query: 460 VKITSVGRWSVFGEVIK 476
V+IT ++S+FG+V++
Sbjct: 480 VEITGCTKFSMFGKVLQ 496
>gi|350422581|ref|XP_003493215.1| PREDICTED: CDKAL1-like protein-like [Bombus impatiens]
Length = 540
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/435 (54%), Positives = 309/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+ +
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKSPAEDHF 115
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I + K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 168 HRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEAGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R +GV E+WL+SEDTG YGRDIG +LP LL A+V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWALV-KVVPDGCR-VRVGMTNPPY 293
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILE+L+E++++L HP VYSFLH+PVQSGSD VL+ M REYT DF VV+ L E VP +
Sbjct: 294 ILEYLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRGDFERVVNFLRERVPELT 353
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM ++P+ +VK R+
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTRIPTQIVKNRT 413
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ L+ F+++ PY G V+ + +TEI+ D H VGH K Y QVL+P LG V
Sbjct: 414 KRLSEFFQSYFPYFDRIGLVQEVLVTEISHDRKHYVGHNKSYEQVLLPLKEEYLGKIVRV 473
Query: 461 KITSVGRWSVFGEVI 475
KI ++S+ GE I
Sbjct: 474 KIVETTKYSMKGEPI 488
>gi|125807910|ref|XP_001360562.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
gi|121988829|sp|Q291H5.1|CDKAL_DROPS RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|54635734|gb|EAL25137.1| GA19679 [Drosophila pseudoobscura pseudoobscura]
Length = 553
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/435 (56%), Positives = 315/435 (72%), Gaps = 17/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+ + DT
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 111 ---IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHIVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F ++ PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHV 484
Query: 461 KITSVGRWSVFGEVI 475
+ITSV ++S+ GE++
Sbjct: 485 RITSVSKFSMVGEIL 499
>gi|195150351|ref|XP_002016118.1| GL10666 [Drosophila persimilis]
gi|194109965|gb|EDW32008.1| GL10666 [Drosophila persimilis]
Length = 553
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 245/435 (56%), Positives = 315/435 (72%), Gaps = 17/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+ +EAD+WL+N+ + DT
Sbjct: 68 IPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GKDEADLWLLNSCTVKNPSEDTF 126
Query: 111 ---IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I S K +VVAGCVPQG+ L G+S++GVQQIDRVVEVVEETLKGH VRLL
Sbjct: 127 RNEIESGMSNGKHVVVAGCVPQGAPKSDYLRGLSVIGVQQIDRVVEVVEETLKGHSVRLL 186
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ L LPKVR+N +EI+ IN GCL CTYCKTKHARG L SY E +V
Sbjct: 187 QNKKVHGRRVAGAPLSLPKVRKNPLIEIISINTGCLNQCTYCKTKHARGDLASYPPEEIV 246
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R R A+G E+WL+SEDTGAYGRDIG +LP LL +V +P MLR+GMTNPP+
Sbjct: 247 DRARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWKLVEVIPE--HCMLRVGMTNPPY 304
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L E VPG+
Sbjct: 305 ILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDFLRERVPGVT 364
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+EDF +T+ L Y+FP + I+QF+PRPGTPAA+M+++P+ +VKKR+
Sbjct: 365 IATDIICGFPTETEEDFEETMTLCGRYRFPSLFINQFFPRPGTPAAKMERIPANLVKKRT 424
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ LT +F ++ PY G + + +TEI+ D +H VGH K Y QVL+P N+LGT V
Sbjct: 425 KRLTDLFYSYEPYAQRVGEMYTVLVTEISHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHV 484
Query: 461 KITSVGRWSVFGEVI 475
+ITSV ++S+ GE++
Sbjct: 485 RITSVSKFSMVGEIL 499
>gi|391334616|ref|XP_003741698.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Metaseiulus occidentalis]
Length = 521
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/490 (49%), Positives = 325/490 (66%), Gaps = 28/490 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL G+ P G +P + P K+K H + +PG +
Sbjct: 14 VDDIEDLDFGNFPRPEPRGQVVP-KIIRKAP--TKDKEEFHGDSF---------VPGHQK 61
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY+KT+GCSHN SDSEYM G LSA GY + N +EA +WL+N+ + + I
Sbjct: 62 IYVKTWGCSHNSSDSEYMGGMLSAAGYPIVSNKDEASLWLLNSCTVKNPSEEHLKNSIRS 121
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
S K +VV GCV Q + L+G+SIVG QIDRVVEVVEETLKG+ VRLL K +
Sbjct: 122 ALSQNKKVVVTGCVSQAEPKAEFLQGLSIVGTHQIDRVVEVVEETLKGNSVRLLGAKSVK 181
Query: 174 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L LPK+R+N VEIL IN GCL CTYCKTK ARG+LGSY +E +V R +
Sbjct: 182 GKKQGGAKLSLPKIRKNPLVEILAINTGCLNHCTYCKTKMARGNLGSYPIEDIVERCKQS 241
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GVKE+W++SEDTGAYGRDIG+ LP LL +V +P LR+GMTNPP+I++HL+
Sbjct: 242 FQEGVKEIWMTSEDTGAYGRDIGLTLPELLREVVKVIPE--GCYLRLGMTNPPYIMDHLE 299
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
++AE+L HP VYSFLH+PVQSGSD VL M REYT F VVD L + VPG+ IATDII
Sbjct: 300 DMAEILSHPRVYSFLHIPVQSGSDPVLKEMRREYTREQFCQVVDFLRDRVPGITIATDII 359
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP ET+EDF+ T++L +Y+FP ++I+QFYPRPGTPAA++K++P+ +VK R+R LT +
Sbjct: 360 CGFPTETEEDFDDTMSLCAKYEFPSLYINQFYPRPGTPAAKLKRIPTEIVKHRTRRLTQL 419
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
F++++PY G+ I +TEIAAD HLVGH K Y Q+LVP +LG++ V+I G
Sbjct: 420 FDSYSPYKDRIGKEYDILVTEIAADKTHLVGHNKFYEQILVPQRAGLLGSTVRVRIEEYG 479
Query: 467 RWSVFGEVIK 476
+ + G +++
Sbjct: 480 KHFMRGRILE 489
>gi|340723640|ref|XP_003400197.1| PREDICTED: CDKAL1-like protein-like [Bombus terrestris]
Length = 540
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/435 (54%), Positives = 312/435 (71%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
+PGT+TIY KT+GC+HN SDSEYMAGQL+A+GY LT+N EAD+WL+N+ A D
Sbjct: 56 VPGTQTIYTKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYEADLWLLNSCTVKNPAEDHF 115
Query: 111 IAKCKSAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ ++ +K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGRKMGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK +L LPK+RRN +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 176 QQKKEGGKKIGGASLRLPKIRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 235
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R +GV E+WL+SEDTG YGRDIG +LP LL +V ++ PDG +R+GMTNPP+
Sbjct: 236 ERAIQAFDEGVCELWLTSEDTGTYGRDIGTSLPELLWTLV-KVVPDGCR-IRVGMTNPPY 293
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E++++L HP VYSFLH+PVQSGSD VL+ M REYT +DF VV+ L E VP +
Sbjct: 294 ILEHLEEMSKILSHPKVYSFLHIPVQSGSDQVLADMKREYTRADFERVVNFLRERVPELT 353
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET++DF +T+ L ++YKFP + ++QF+PRPGTPAARM K+P+ +VK R+
Sbjct: 354 IATDIICGFPTETEQDFEETMKLCEKYKFPSLFVNQFFPRPGTPAARMTKIPTQIVKNRT 413
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ L+ F++++PY G V+ + +TEI+ D H VGH K Y QVL+P LG V
Sbjct: 414 KRLSEFFQSYSPYFERIGLVQDVLVTEISHDRKHYVGHNKSYEQVLLPLKKEYLGKIVTV 473
Query: 461 KITSVGRWSVFGEVI 475
KI ++ + GE I
Sbjct: 474 KIVETTKYCMKGEPI 488
>gi|41055309|ref|NP_956921.1| threonylcarbamoyladenosine tRNA methylthiotransferase [Danio rerio]
gi|82187245|sp|Q6PG34.1|CDKAL_DANRE RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDK5 regulatory
subunit-associated protein 1-like 1; AltName:
Full=tRNA-t(6)A37 methylthiotransferase
gi|34784048|gb|AAH57248.1| CDK5 regulatory subunit associated protein 1-like 1 [Danio rerio]
Length = 547
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/450 (51%), Positives = 312/450 (69%), Gaps = 16/450 (3%)
Query: 37 KPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
+ R H + IPG + +++KT+GCSHN SD EYMAGQL+ GY +T++S +A
Sbjct: 37 RARKHKQETGEQMQTDSVIPGMQKVWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDA 96
Query: 97 DIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQID 149
D+WL+N+ + I K + K +V+AGCVPQ + ++ +SI+GVQQID
Sbjct: 97 DLWLLNSCTVKSPAEDHFRNAIRKAQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQID 156
Query: 150 RVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYC 202
RVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYC
Sbjct: 157 RVVEVVDEAIKGHSVRLLGQKKEKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYC 216
Query: 203 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262
KTKHARG L SY VE LV RVR +GV E+WL+SEDTGAYGRDIG +LP LL +V E
Sbjct: 217 KTKHARGDLASYPVEELVERVRQSFQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEE 276
Query: 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTL 322
+P +G+ MLR+GMTNPP+ILEHL+E++ +L+HP V+SFLHVP+QS SD+VL M REY
Sbjct: 277 IP-EGA-MLRLGMTNPPYILEHLEEMSRILQHPRVFSFLHVPLQSASDSVLMEMRREYCC 334
Query: 323 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 382
+DF +VD L E VPG+ IATDIICGFPGETDEDF QT+ L++ Y+FP + I+QFYPRPG
Sbjct: 335 ADFTHLVDYLKERVPGITIATDIICGFPGETDEDFEQTLALVRRYRFPSLFINQFYPRPG 394
Query: 383 TPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGY 442
TPAA M+++P+ V K+R++EL+++F ++ PY G +++ +TE + D + V H K Y
Sbjct: 395 TPAALMQQLPAHVKKQRTKELSALFHSYRPYDHKMGEQQQVLVTEESFDSQYYVAHNKFY 454
Query: 443 VQVLVPSTGNMLGTSALVKITSVGRWSVFG 472
QVLVP LG V++ G+ + G
Sbjct: 455 EQVLVPKRPEYLGKMVQVEVYECGKHYMKG 484
>gi|328773588|gb|EGF83625.1| hypothetical protein BATDEDRAFT_1672, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 446
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/443 (53%), Positives = 311/443 (70%), Gaps = 24/443 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNS--EEADIWLINT-------Q 104
+PG ++++KT+GC HN SD EYMAG L+A GY + D+S EEA +W++N+ Q
Sbjct: 1 LPGQASVFVKTWGCGHNNSDGEYMAGLLAADGYNVILDHSKAEEAQVWVLNSCTVKGPSQ 60
Query: 105 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 164
I K K A K +VVAGCVPQ S E +G+S++GVQQID+VV VVEETLKG+ +
Sbjct: 61 QTFVNDIDKGKLAGKKIVVAGCVPQASPSNDEWKGLSVIGVQQIDQVVRVVEETLKGNTI 120
Query: 165 RLLHRKKLPA------------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 212
RL+ K + LDLPKVRRN F+EI+PIN GCL CTYCKTKHARG LG
Sbjct: 121 RLMKEAKEVSADGVKRKAGGARLDLPKVRRNPFIEIIPINTGCLNQCTYCKTKHARGDLG 180
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD--GSTM 270
SY++ ++ RV +V+ +GVKE+WL+SEDTGAYGRDIGV++ LL I+ + M
Sbjct: 181 SYSLAEIIARVESVLHEGVKEIWLTSEDTGAYGRDIGVSIVDLLEGILVAMDKHIVQDAM 240
Query: 271 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
LR+GMTNPP+ILEHLK IA+VL HP VYSFLHVPVQ+GS VL M R Y + DF VVD
Sbjct: 241 LRVGMTNPPYILEHLKGIAKVLNHPKVYSFLHVPVQAGSTKVLDDMRRLYAVQDFERVVD 300
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 390
L E VP + IATDIICGFP ETDEDF++T++L+++YKF +HISQFYPRPGTPAARMK+
Sbjct: 301 VLREKVPCVTIATDIICGFPTETDEDFDETMHLLEKYKFSVLHISQFYPRPGTPAARMKR 360
Query: 391 VPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST 450
+ + +VK RSR T+ FE++T Y + G +++I +TE +ADG H VGH K Y Q+LVP
Sbjct: 361 ISTNIVKNRSRRATTFFESYTTYDSLVGTIQKILVTEQSADGNHYVGHNKPYQQILVPKN 420
Query: 451 GNMLGTSALVKITSVGRWSVFGE 473
++G + V+I ++ + GE
Sbjct: 421 EKLMGQTFHVRIVRASKFYLMGE 443
>gi|355561353|gb|EHH17985.1| CDK5 regulatory subunit-associated protein 1-like 1 [Macaca
mulatta]
Length = 576
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/435 (53%), Positives = 308/435 (70%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+ +GY +T+N+ +AD+WL+N+ +
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLATYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 179
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 GQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 239
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ VVKK
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVVKKAK 417
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ +++PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 418 DKXXXXXXSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEV 477
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 478 DICESGKHFMKGQPV 492
>gi|195488757|ref|XP_002092449.1| GE14196 [Drosophila yakuba]
gi|194178550|gb|EDW92161.1| GE14196 [Drosophila yakuba]
Length = 552
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 246/457 (53%), Positives = 323/457 (70%), Gaps = 28/457 (6%)
Query: 34 NKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS 93
+K KP +H + IPGT+ +++KT+GC+HN SDSEYMAGQL+A+GY L+
Sbjct: 56 DKPKPTIH----------ASVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYKLS-GK 104
Query: 94 EEADIWLINT----QSAMDTLIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQ 146
EEAD+WL+N+ + DT + +S K +VVAGCVPQG+ L G+S++GVQ
Sbjct: 105 EEADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAPKSDYLNGLSVIGVQ 164
Query: 147 QIDRVVEVVEETLKGHEVRLLHRKKL--------PALDLPKVRRNKFVEILPINVGCLGA 198
QIDRVVEVVEETLKG+ V+LL KK L LPKVR+N+ +EI+ IN GCL
Sbjct: 165 QIDRVVEVVEETLKGNSVQLLQNKKKVHGRRVAGAPLSLPKVRKNRLIEIISINSGCLNQ 224
Query: 199 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 258
CTYCKTKHARG L SY E +V R R A+G E+WL+SEDTGAYGRDIG +LP LL
Sbjct: 225 CTYCKTKHARGDLASYPPEEVVERARQSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQ 284
Query: 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 318
+V +P MLR+GMTNPP+ILEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M R
Sbjct: 285 LVEVIPE--HCMLRVGMTNPPYILEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKR 342
Query: 319 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 378
EY DF VVD L E VPG+ IATDIICGFP ET+EDF +T+ L +Y+FP + I+QF+
Sbjct: 343 EYCRQDFEHVVDFLRERVPGVTIATDIICGFPTETEEDFEETMTLCAKYRFPSLFINQFF 402
Query: 379 PRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G V + +TE++ D +H VGH
Sbjct: 403 PRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAERVGEVYTVLVTEVSHDKLHYVGH 462
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
K Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 463 NKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEIL 499
>gi|449279432|gb|EMC87024.1| CDK5 regulatory subunit-associated protein 1-like 1, partial
[Columba livia]
Length = 515
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/435 (52%), Positives = 309/435 (71%), Gaps = 18/435 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +TDNS EAD+WL+N+ +
Sbjct: 58 IPGVQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITDNSAEADLWLLNSCTVKNPAEDHF 117
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + KK +V+AGCVPQ L+G+SI+GV ++EVVEET+KGH VRLL
Sbjct: 118 RNSIKKAQEGKKKVVLAGCVPQAQPRQDYLKGLSIIGVCIF--IIEVVEETIKGHSVRLL 175
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV
Sbjct: 176 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELV 235
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+
Sbjct: 236 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPY 293
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 294 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGIT 353
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETDEDF +T+ L+++Y+FP + I+QFYPRPGTPAA++ +VP+AV K+R+
Sbjct: 354 IATDIICGFPGETDEDFQETMKLVEQYRFPSLFINQFYPRPGTPAAKLHQVPAAVKKQRT 413
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ +F ++ PY G +R+ +TE + D + V H Y QVLVP ++G V
Sbjct: 414 KDLSQLFHSYNPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEV 473
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 474 NIYEAGKHFMKGQPV 488
>gi|339252460|ref|XP_003371453.1| putative radical SAM domain protein [Trichinella spiralis]
gi|316968295|gb|EFV52591.1| putative radical SAM domain protein [Trichinella spiralis]
Length = 542
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/436 (52%), Positives = 313/436 (71%), Gaps = 18/436 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG ++Y+KT+GC+HN SDSEYMAG +S+ GY + D+ ADIWL+N+ + +
Sbjct: 48 IPGAFSVYVKTWGCTHNSSDSEYMAGLMSSAGYGIVDDPSVADIWLLNSCTVKTPSEQHV 107
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ K ++ KP++V+GCVPQ + L+GVS+VG+QQIDR+VEVVEETLKG+ V+LL
Sbjct: 108 QNELEKARALNKPVIVSGCVPQAEPSIPWLQGVSLVGIQQIDRIVEVVEETLKGNTVQLL 167
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+ KK+ LDLPKVRRN VEI+ IN GCL CTYCKTK ARG+L SY++E ++
Sbjct: 168 NYKKVKGKRTAGARLDLPKVRRNPLVEIIAINTGCLNNCTYCKTKKARGNLASYSIEEII 227
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + I++GVKE+WL+SED GAYGRDI LP LL A+ A+LP DG MLR+GMTNPPF
Sbjct: 228 DRAESCISEGVKEIWLTSEDLGAYGRDIDCTLPELLKALTAKLP-DG-VMLRLGMTNPPF 285
Query: 281 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
I ++EI E+L HPCVYSFLH+PVQSGSDAVL M REY + DF VV+ + + VPG+
Sbjct: 286 HIPISVQEIGEILNHPCVYSFLHIPVQSGSDAVLRDMRREYNVDDFCAVVEFMRKKVPGI 345
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATD+ICGFP ET++DF T++L+++Y+F + I+QFYPRPGTPAA++K++ +AVVK R
Sbjct: 346 TIATDVICGFPTETEQDFKDTLDLVEKYRFASLFINQFYPRPGTPAAKLKRLDTAVVKDR 405
Query: 400 SRELTSVFEAFTPYLGMEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSA 458
+R +T +F ++ PY G ++ ITE + G +LVGH K Y Q+LV + N+LG
Sbjct: 406 TRRMTQLFNSYEPYRNRVGLKYQVLITERSFRGDDYLVGHNKFYEQILVANQPNLLGKKV 465
Query: 459 LVKITSVGRWSVFGEV 474
VKI S + S+ GE+
Sbjct: 466 WVKIVSCSKHSMVGEL 481
>gi|313226156|emb|CBY21299.1| unnamed protein product [Oikopleura dioica]
Length = 1581
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/459 (51%), Positives = 319/459 (69%), Gaps = 22/459 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTQS----AMDTLI 111
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+ + A D
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 112 AKCKSAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 168
+A+K P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAQKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 169 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P V+K+R++
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTK 408
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALV 460
+L++VF+++ P+ G EG + ITE+A D + LVGHTK Y Q+LV ++G V
Sbjct: 409 KLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLVGHTKSYHQILVKGNPDELMGKRVDV 468
Query: 461 KITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 499
+ + S+ G ++ + V IA N +I + ++ K
Sbjct: 469 VVYQTTKHSMLGRIVSVAKSV--AIAENLQIMKEKQEAK 505
>gi|300192927|ref|NP_001177888.1| CDKAL1-like protein [Nasonia vitripennis]
Length = 541
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 228/435 (52%), Positives = 301/435 (69%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KT+GC+HN SDSEYMAGQLS +GY LT++ AD+W++N+ +
Sbjct: 57 IPGTQTIYIKTWGCTHNSSDSEYMAGQLSMYGYNLTEDKSIADLWILNSCTVKNPAEDHF 116
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I + K +VV+GCVPQG+ ++G+SI+GVQQIDRVVEVVEETLKG+ V+ L
Sbjct: 117 KNEINLARKLGKHIVVSGCVPQGAPKSNFIQGLSIIGVQQIDRVVEVVEETLKGNTVKFL 176
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++KK L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E ++
Sbjct: 177 NKKKEAGKKIGGAPLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYRPEEII 236
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R DG+KE+WL+SEDTGAYG+DI NLP LL ++ ++ PD M RIGMTNPP+
Sbjct: 237 DRAIQAFKDGIKELWLTSEDTGAYGKDIDTNLPELLWKLI-DVIPDKCRM-RIGMTNPPY 294
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+EI ++L+HP VYSFLH+PVQSGSD VL M REY+ SDF +VD L E +P +
Sbjct: 295 ILEHLEEIGKILKHPKVYSFLHIPVQSGSDRVLFDMKREYSRSDFENIVDFLKEKIPNIN 354
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATD+ICGFP ET EDF +T++L ++YKF + I+QF+PR GTPAA+M +VPS +K R+
Sbjct: 355 IATDVICGFPTETSEDFEETMSLCQKYKFSTLFINQFFPRQGTPAAKMIQVPSKEIKNRT 414
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ ++ F+++ PY G ++ + +TEIA D H V H Y QVL+P +G V
Sbjct: 415 KLISEFFQSYEPYNTKIGEIQEVLVTEIAHDNKHYVAHNSYYEQVLIPMKKEYMGEMLKV 474
Query: 461 KITSVGRWSVFGEVI 475
KI S + S+ GE
Sbjct: 475 KIISASKHSMKGEAF 489
>gi|313220891|emb|CBY31727.1| unnamed protein product [Oikopleura dioica]
Length = 1590
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/459 (51%), Positives = 318/459 (69%), Gaps = 22/459 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSE--EADIWLINTQS----AMDTLI 111
+ IY++T+GC+HN SDSEYMAGQL+ GY + D+++ E D+WL+N+ + A D
Sbjct: 51 QKIYVRTWGCTHNTSDSEYMAGQLAEAGYDVKLDDAKRLECDLWLLNSCTVKAPAEDHFK 110
Query: 112 AKCKSAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 168
+A K P+VVAGCVPQG+ K ++G+S +GVQQIDRVVEVVEETLKG+ V+LL
Sbjct: 111 NAINAAHKVNIPVVVAGCVPQGAPSDKFVKGLSTIGVQQIDRVVEVVEETLKGNTVKLLG 170
Query: 169 RKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
KK L LPKVRRN +EI+ IN GCL +CTYCKTKHARG L SY ++ +V
Sbjct: 171 PKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKHARGDLASYPIDEIVA 230
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P M+RIGMTNPP+I
Sbjct: 231 RFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE--GCMMRIGMTNPPYI 288
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
LEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF VVDTL VP I
Sbjct: 289 LEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFCKVVDTLRANVPDCNI 348
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
ATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA+ +++P V+K+R++
Sbjct: 349 ATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAAKWEQIPRQVIKERTK 408
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALV 460
+L++VF+++ P+ G EG + ITE+A D + LVGHTK Y Q+LV ++G V
Sbjct: 409 KLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLVGHTKSYHQILVKGNPDKLMGKRVDV 468
Query: 461 KITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 499
+ + S+ G ++ + V IA N +I + ++ K
Sbjct: 469 VVYQTTKHSMLGRIVSVAKSV--AIAENLQIMKEKQEAK 505
>gi|405952652|gb|EKC20438.1| hypothetical protein CGI_10006004 [Crassostrea gigas]
Length = 536
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/435 (51%), Positives = 303/435 (69%), Gaps = 37/435 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+ +++KT+GCSHN SDSEYMAGQL+++GY +TD+SE AD+WL+N+ +
Sbjct: 64 IPGTQKVWLKTWGCSHNNSDSEYMAGQLASYGYKITDDSESADLWLLNSCTVKNPAEDHF 123
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + +K +VVAGCVPQG L+G+S++GVQQIDRV EVVEETLKGH VRL
Sbjct: 124 RNEIKKAREKQKKIVVAGCVPQGQPRTDYLQGLSVIGVQQIDRVTEVVEETLKGHSVRLY 183
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGSY + +V
Sbjct: 184 GQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPDEIV 243
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+GMTNPP+
Sbjct: 244 ARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RLGMTNPPY 301
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L E VPG+
Sbjct: 302 ILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLKERVPGVT 361
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+ ++ +
Sbjct: 362 IATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPAQLMSE-- 419
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++++ +TE + D + VGH K Y QVLVP N++G V
Sbjct: 420 -------------------IQQVLVTETSHDQQYYVGHNKFYDQVLVPKNENLMGKMVTV 460
Query: 461 KITSVGRWSVFGEVI 475
+I G+ + G+++
Sbjct: 461 RIVETGKHFLKGQLL 475
>gi|357625033|gb|EHJ75587.1| hypothetical protein KGM_15103 [Danaus plexippus]
Length = 538
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/436 (52%), Positives = 298/436 (68%), Gaps = 17/436 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
+PGT+TIY+KT+GC+HN SDSEYMAG L+A GY LT++ A +WL+N+ A D
Sbjct: 57 VPGTQTIYVKTWGCAHNNSDSEYMAGLLAAHGYKLTEDKFSAQLWLLNSCTVKSPAEDHF 116
Query: 111 IAKCKSAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ + A+K LV+AGCVPQG+ L G+S+VGV QIDR+VE+VEETLKGH VRL
Sbjct: 117 KNEIELAQKRGIHLVLAGCVPQGAPRSGYLAGLSVVGVHQIDRIVEIVEETLKGHTVRLF 176
Query: 168 HRKKL--------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
+KK +L LPKVR+N +EI+PIN GCL CTYCKTKHARG LGSY E +
Sbjct: 177 GQKKTEEGRKAGGASLLLPKVRKNPLIEIIPINTGCLNQCTYCKTKHARGELGSYPPEEI 236
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V R +GV E+WL+SEDTG YGRDIG +LP LL +VA +P LR+GMTNPP
Sbjct: 237 VERATQSFKEGVCEIWLTSEDTGTYGRDIGTSLPYLLKQLVAVIP--EGCRLRLGMTNPP 294
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ILEHL E+AE++ HP VY FLHVPVQSGSD VL+ M REY+ DF VVD L E VPG+
Sbjct: 295 YILEHLAEVAEIMHHPRVYKFLHVPVQSGSDQVLADMKREYSRKDFERVVDYLAERVPGI 354
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDIICGFP ETD DF T+ L +Y+F + I+QF+PRPGTPAA M +VP VKKR
Sbjct: 355 TIATDIICGFPTETDADFEDTMQLCMKYRFSSLFINQFFPRPGTPAANMTRVPPQDVKKR 414
Query: 400 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
+++L+ F ++ PY G ++ + +T+++ D + V H + Y QVLVP +G
Sbjct: 415 TKKLSEFFRSYEPYGHKVGEIQEVLVTDVSHDKNYYVAHNEFYEQVLVPKEERYMGKLVT 474
Query: 460 VKITSVGRWSVFGEVI 475
V+ITS ++S+ G +
Sbjct: 475 VRITSASKFSMMGHPV 490
>gi|427785609|gb|JAA58256.1| Putative cdk5 regulatory subunit associated protein 1-like 1
[Rhipicephalus pulchellus]
Length = 554
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/442 (53%), Positives = 314/442 (71%), Gaps = 16/442 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+ A D
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 111 IAKCKSA---KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
++A K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 111 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 170
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 171 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 230
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV+E+WL+SEDTGAYGRDIGV LP LL IV +P MLR+GMTNPP+
Sbjct: 231 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREIVQVIPE--GCMLRLGMTNPPY 288
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+
Sbjct: 289 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 348
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+
Sbjct: 349 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 408
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++++ +F+++ PY G + +T+ A D HLVGH K Y Q+L+P +G V
Sbjct: 409 KQVSELFQSYVPYSHRVGERHTVLVTDTAHDQKHLVGHNKFYEQILLPMDDQYMGQLVDV 468
Query: 461 KITSVGRWSVFGEVIKILNQVD 482
+IT G+ + V+ I +D
Sbjct: 469 EITGGGKHFMQCNVVGINTALD 490
>gi|328718445|ref|XP_001945556.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1-like
[Acyrthosiphon pisum]
Length = 522
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/487 (49%), Positives = 328/487 (67%), Gaps = 24/487 (4%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIY 62
DIEDL++ S A G P N V + PK K KP H ++PGT+TI+
Sbjct: 8 DIEDLIS-SVADVAEIGRVKPRNIVSLRPKV-KVKPVREILHPPS------QVPGTQTIF 59
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCK 115
+KT+GCSHN SD EYMAG LS +GY +T++ AD+W++N+ + I+ K
Sbjct: 60 IKTWGCSHNSSDGEYMAGLLSNYGYKITEDKAIADLWILNSCTVKNPAEDHFRNEISTGK 119
Query: 116 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL--- 172
+ K +VVAGCVPQG + ++ +S++GVQQIDRVVEVVEETLKGH +RLL +KK+
Sbjct: 120 KSGKFVVVAGCVPQGDQKSPFIQNLSVIGVQQIDRVVEVVEETLKGHTIRLLGQKKINGK 179
Query: 173 ----PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
L LPK+R+NK +EI+ I+ GCL CTYCKTKHARG+LGSY + +V R
Sbjct: 180 KDGGARLQLPKMRKNKLIEIIAISTGCLNQCTYCKTKHARGNLGSYPPDEIVQRAIESFN 239
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+G E+WL+SEDTGAYG DI NLP LL +VA +P M+RIGMTNPP+IL HL+EI
Sbjct: 240 EGAVELWLTSEDTGAYGLDIQTNLPELLWRLVAIIPE--GCMMRIGMTNPPYILNHLEEI 297
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
A++L HP VY+FLHVPVQSGS+ VL+ M REY++ +F TVV+ L + VPG+ IATDIICG
Sbjct: 298 AKILSHPRVYAFLHVPVQSGSNQVLADMKREYSIEEFETVVNFLRQRVPGVSIATDIICG 357
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ET+EDF++T+++ ++YKFP + I+QFYPR GTPAARM K+P+ +VK R++ LT +F
Sbjct: 358 FPTETEEDFSETMSVCEKYKFPSLFINQFYPRKGTPAARMPKIPTDMVKIRTKRLTELFH 417
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
++T Y G ++ I ITE A +GI +GH K Y QVLV ++G V + S +
Sbjct: 418 SYTTYDHRIGEIQEILITEEAKNGIEFIGHNKYYEQVLVAKDPELMGKCIEVIVKSAKKH 477
Query: 469 SVFGEVI 475
+ E++
Sbjct: 478 CLIAEMV 484
>gi|427797963|gb|JAA64433.1| Putative cdk5 regulatory subunit-associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 550
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 236/442 (53%), Positives = 314/442 (71%), Gaps = 16/442 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+ A D
Sbjct: 87 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 146
Query: 111 IAKCKSA---KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
++A K +VVAGCV Q + ++ L G+SIVGVQQ DRVVEVVEETLKG+ VRLL
Sbjct: 147 RGAIEAALHQGKKVVVAGCVSQATPNVGYLRGLSIVGVQQTDRVVEVVEETLKGNSVRLL 206
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK L LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY ++ LV
Sbjct: 207 GSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINTGCLNRCTYCKTKHARGDLGSYPIDELV 266
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV+E+WL+SEDTGAYGRDIGV LP LL +V +P MLR+GMTNPP+
Sbjct: 267 ARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLPDLLREMVQVIPE--GCMLRLGMTNPPY 324
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
IL+HL+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT++ FR+VVD L + VPG+
Sbjct: 325 ILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVLTEMRREYTVAQFRSVVDHLRKAVPGIT 384
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+EDF +T+ L+++Y+FP + I+QFYPRPGTPAA MK++P+ +VK+R+
Sbjct: 385 IATDIICGFPTETEEDFEETMQLVRDYEFPSLFINQFYPRPGTPAASMKRIPTHIVKERT 444
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++++ +F+++ PY G + +T+ A D HLVGH K Y Q+L+P +G V
Sbjct: 445 KQVSELFQSYVPYSHRVGERHTVLVTDTAHDQKHLVGHNKFYEQILLPMDDQYMGQLVDV 504
Query: 461 KITSVGRWSVFGEVIKILNQVD 482
+IT G+ + V+ I +D
Sbjct: 505 EITGGGKHFMQCNVVGINTALD 526
>gi|167533429|ref|XP_001748394.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773206|gb|EDQ86849.1| predicted protein [Monosiga brevicollis MX1]
Length = 466
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/447 (49%), Positives = 301/447 (67%), Gaps = 32/447 (7%)
Query: 38 PRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
PR HD + IPG++TI+++T+GCSHN SD EYMAG LSA GY ++D E AD
Sbjct: 30 PR-HDRSRREQAEGDSFIPGSKTIFLRTWGCSHNNSDGEYMAGLLSAAGYTISDKREGAD 88
Query: 98 IWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 150
+W++N+ + + I +S P+V+AGCVPQ QIDR
Sbjct: 89 LWILNSCTVKTPSEDTFNNEIRDARSRNIPVVLAGCVPQ---------------TMQIDR 133
Query: 151 VVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCK 203
VVEVVEETL+G VRLL KK+ ALDLPK+RRN +EI+PIN GCL CTYCK
Sbjct: 134 VVEVVEETLQGRTVRLLGSKKVDGRKTGGTALDLPKIRRNPLIEIIPINTGCLNKCTYCK 193
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263
TKHARG LGSYT++ +V RV+ VIA+GV E+WL+SEDTGAYGRDI ++P LL AI+A +
Sbjct: 194 TKHARGDLGSYTIQEIVQRVQQVIAEGVVEIWLTSEDTGAYGRDINTSIPELLRAILAVV 253
Query: 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 323
P M+R+GMTNPP+I+EH++ IAE LRHP +Y F+H+P+QSG++ +L AM REYT
Sbjct: 254 P--AGVMVRLGMTNPPYIVEHVQAIAECLRHPRMYKFIHIPIQSGANPILHAMQREYTRE 311
Query: 324 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383
DF V DTL+E VP + IATDIICGFPGETD DF T +++ Y FP + +QF+PRPGT
Sbjct: 312 DFCFVADTLLEQVPALTIATDIICGFPGETDADFEDTFEIVRRYHFPSLFTNQFFPRPGT 371
Query: 384 PAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYV 443
PAA M++V +VK+R++EL+ F + Y +R+ +T+ A D +H V H + +
Sbjct: 372 PAAAMERVDPRLVKQRTKELSDYFRGYRVYDDQLDSYQRVLVTDTATDNVHFVAHNRSFD 431
Query: 444 QVLVPSTGNMLGTSALVKITSVGRWSV 470
QVLVP+ + +G +VKIT+V ++ +
Sbjct: 432 QVLVPANPDFMGKLIVVKITNVNKFFI 458
>gi|170028512|ref|XP_001842139.1| aq_284 [Culex quinquefasciatus]
gi|167876261|gb|EDS39644.1| aq_284 [Culex quinquefasciatus]
Length = 555
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/436 (52%), Positives = 302/436 (69%), Gaps = 18/436 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
IPGT+ IY+KT+GC+HN SDSEYMAGQL+++GY +T + +A++WL+N+ + DT
Sbjct: 63 IPGTQRIYLKTWGCAHNSSDSEYMAGQLASYGYNITTDKTDANLWLLNSCTVKNPSEDTF 122
Query: 111 ---IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I + K +V+AGCVPQ + + + G+SIVGVQQ+DRV EVVEETLKGH VRLL
Sbjct: 123 RNEILAAEKMGKHVVLAGCVPQAAPKSEYMHGLSIVGVQQLDRVTEVVEETLKGHSVRLL 182
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK+ P L LPKVR+N +EI+PIN GCL CTYCKTK AR L SY VE ++
Sbjct: 183 QPKKVNGKKVAGPNLALPKVRKNPLIEIIPINSGCLNTCTYCKTKFARADLISYPVEEII 242
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R V +GV E+WL+SEDTG YGRDIG +LP LL +V E+ PD + LR+GMTNPP+
Sbjct: 243 ERATQVFQEGVCEIWLTSEDTGTYGRDIGSSLPELLWKLV-EVIPD-NCRLRLGMTNPPY 300
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL E+A++L HP VY FLHVPVQSGSD+VL M REY +DF + D L + VPG+
Sbjct: 301 ILEHLDEMAKILAHPKVYGFLHVPVQSGSDSVLGEMKREYCRADFERICDFLKQKVPGIT 360
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+ DF T++L +Y+FP + I+QFYPRPGTPAA+M+++P VK R+
Sbjct: 361 IATDIICGFPTETEADFEHTMSLCAKYEFPSLFINQFYPRPGTPAAKMQRIPPDQVKTRT 420
Query: 401 RELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
+ LT +F + PY G + + +TEI+ D H VGH K Y Q+L+P +LG
Sbjct: 421 KRLTDLFYGYEPYAKKYTIGDRQTVLVTEISHDKKHYVGHNKFYEQILLPMDKPLLGKLV 480
Query: 459 LVKITSVGRWSVFGEV 474
V+I + ++S+ E+
Sbjct: 481 EVRIAKITKFSMIAEI 496
>gi|149045299|gb|EDL98385.1| CDK5 regulatory subunit associated protein 1-like 1 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 442
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/373 (58%), Positives = 284/373 (76%), Gaps = 16/373 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRT 416
Query: 401 RELTSVFEAFTPY 413
++L+ VF ++ PY
Sbjct: 417 KDLSRVFHSYNPY 429
>gi|429329558|gb|AFZ81317.1| RNA modification enzyme, MiaB family domain-containing protein
[Babesia equi]
Length = 643
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/440 (49%), Positives = 309/440 (70%), Gaps = 11/440 (2%)
Query: 44 HLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
H +T + +P IPG++T+Y + FGC+HN SDSEYM G LS +GY +TD+ +A + +IN+
Sbjct: 205 HEKETCNHTPLIPGSQTVYFRGFGCAHNSSDSEYMMGILSEYGYNITDDMSKAQVAVINS 264
Query: 104 -------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE--GVSIVGVQQIDRVVEV 154
Q AM T I K K K P+VV GCVPQ ++L L+ VS++G QIDR+VEV
Sbjct: 265 CTVKGPSQDAMATEIRKAKDLKIPIVVGGCVPQADKNLTPLKDPSVSLLGTSQIDRIVEV 324
Query: 155 VEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
VE L+G ++ LL RK LP+L+LPK+R+N+ +EI+P++ GCLG+CT+CKTK ARG LGSY
Sbjct: 325 VEHALQGRKLVLLERKTLPSLELPKIRQNELIEIIPLSTGCLGSCTFCKTKQARGVLGSY 384
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
T+ES++ RV + ++ V ++WL+SEDTGAYG DIG+++ +LL +I+ LPPD MLR+G
Sbjct: 385 TLESILDRVESAVSQKVSQIWLTSEDTGAYGIDIGIDIVVLLKSILPLLPPD--VMLRLG 442
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
M+NPP+I H++EIA++L+H V+ F+H+PVQSGSD VL AMNREY + +F +VD + E
Sbjct: 443 MSNPPYIKRHIEEIAKILKHKNVFEFIHIPVQSGSDRVLDAMNREYHIDEFLFLVDKIRE 502
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
VP +ATDIICGFP ETDE+ +T+ L+K+ K P V+ISQFYPRPGTPAA+MK P+
Sbjct: 503 SVPDCSLATDIICGFPTETDEEHLETIQLLKDLKLPIVNISQFYPRPGTPAAKMKAHPNK 562
Query: 395 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
V K R+RE+T VF ++ G+ +W ++ H +GHTK Y++V+V ++L
Sbjct: 563 VAKSRTREVTEVFLSYECNSHYLGKTLPVWFSQTDVKRNHTIGHTKNYIKVVVDKDDSLL 622
Query: 455 GTSALVKITSVGRWSVFGEV 474
G V + +W + G V
Sbjct: 623 GKRRDVLVQHATKWHLTGIV 642
>gi|297677249|ref|XP_002816517.1| PREDICTED: LOW QUALITY PROTEIN: threonylcarbamoyladenosine tRNA
methylthiotransferase, partial [Pongo abelii]
Length = 577
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/435 (51%), Positives = 306/435 (70%), Gaps = 16/435 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +VVAGCVPQ L+G+SI+GVQQIDRVVEVVEET+KG+ V L
Sbjct: 120 RNSIKKAQEENKKIVVAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGYSVSHL 179
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+ K L L K ++ V ++ +N CL ACTYCKTKHARG+L SY ++ LV
Sbjct: 180 CKYKQNGARLHGARLRLKKKKKKCVVSLISLNTXCLNACTYCKTKHARGNLASYPIDELV 239
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 240 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPY 297
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 298 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGIT 357
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+
Sbjct: 358 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRT 417
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
++L+ VF +++PY G +++ +TE + D V H + Y QVLVP +G V
Sbjct: 418 KDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVAHNQFYEQVLVPKNPAFMGKMVEV 477
Query: 461 KITSVGRWSVFGEVI 475
I G+ + G+ +
Sbjct: 478 DIYESGKHFMKGQPV 492
>gi|148700454|gb|EDL32401.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_a
[Mus musculus]
Length = 444
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 226/427 (52%), Positives = 305/427 (71%), Gaps = 21/427 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+++L+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRV 422
Query: 407 FEAFTPY 413
F ++ PY
Sbjct: 423 FHSYNPY 429
>gi|431913258|gb|ELK14936.1| CDK5 regulatory subunit-associated protein 1-like 1 [Pteropus
alecto]
Length = 621
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/423 (52%), Positives = 297/423 (70%), Gaps = 23/423 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+AFGY +T+N+ EAD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAFGYKITENASEADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+S++GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSVIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V ++ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-DVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ V D L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVADFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V+ +R
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVIGERQ 416
Query: 401 RELTS-------VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
+ L + + A + G +++ +TE + D V H + Y Q GN
Sbjct: 417 QVLVTEESFDSKFYVAHNRFYEQIGERQQVLVTEESFDSKFYVAHNRFYEQEFRNRLGNH 476
Query: 454 LGT 456
L +
Sbjct: 477 LSS 479
>gi|354468803|ref|XP_003496840.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Cricetulus griseus]
Length = 432
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/373 (57%), Positives = 282/373 (75%), Gaps = 16/373 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIRKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +VA +P MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVAVIP--EGAMLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+
Sbjct: 297 ILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFPGETD+DF +T+ L++EYKFP + I+QFYPRPGTPAA+ ++VP+ V K+R+
Sbjct: 357 IATDIICGFPGETDQDFQETLKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRT 416
Query: 401 RELTSVFEAFTPY 413
++L+ VF ++ PY
Sbjct: 417 KDLSRVFHSYNPY 429
>gi|300176745|emb|CBK24410.2| unnamed protein product [Blastocystis hominis]
Length = 507
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/429 (50%), Positives = 307/429 (71%), Gaps = 10/429 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD------ 108
IP +++ TFGC+HN +D EYM G LS +G+ +N +EA +W++N+ + D
Sbjct: 48 IPEKYKLWIITFGCAHNFADGEYMKGILSDYGFQFAENRDEASLWVLNSCTVKDPSEIVF 107
Query: 109 -TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ + K K +VVAGCVPQ D L +SI+GV+QI R+VEVVEETLKG+ + LL
Sbjct: 108 RNYVTEAKEKNKMVVVAGCVPQADSDASWLRDLSILGVKQIHRIVEVVEETLKGNTIHLL 167
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
K+LP LDLPK+RR+ +EI+PI+ GCLG CTYCKT++ARG L SY ++S++ R+R
Sbjct: 168 SLKELPPLDLPKIRRDPHIEIVPISEGCLGHCTYCKTQYARGKLMSYPLQSIINRLRAAF 227
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+ V EVWLSSEDTGAYG D G+++ LL I + +P +TM+R+GMTNPP++L HLKE
Sbjct: 228 DEHVFEVWLSSEDTGAYGIDRGLSIADLLKEIPSVIPDQSNTMVRLGMTNPPYVLSHLKE 287
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+A LRHP V+SF+H+PVQSGS+AVL+ M R+YT+ F ++VD L++ VPG+ IATDII
Sbjct: 288 VAAFLRHPNVFSFIHIPVQSGSNAVLNTMQRQYTVEQFTSIVDYLLKEVPGLTIATDIII 347
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GF ETDED QT++L+K+Y+FP V+IS+F+PRPGTPAARMK + S++VK+RS E ++ F
Sbjct: 348 GFASETDEDHKQTMDLLKKYQFPVVNISKFFPRPGTPAARMKHISSSIVKERSSECSAWF 407
Query: 408 EAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
++ PY G+VE +W+ +E + + +VGHTK YV+VL+P ++ G KIT +
Sbjct: 408 KSLNPYQHFLGKVELVWVGSETSRE--FMVGHTKAYVKVLLPMCESLRGKRVAAKITQIT 465
Query: 467 RWSVFGEVI 475
R+ V GE++
Sbjct: 466 RFHVVGEIV 474
>gi|241558622|ref|XP_002400268.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499750|gb|EEC09244.1| conserved hypothetical protein [Ixodes scapularis]
Length = 460
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 228/405 (56%), Positives = 300/405 (74%), Gaps = 16/405 (3%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL 110
+PGT IY+KT+GC+HN SDSEYMAGQL+A GY++ +++ AD+WL+N+ A D
Sbjct: 52 LPGTHKIYVKTWGCAHNSSDSEYMAGQLAAKGYSIVEDASSADLWLLNSCTVKNPAEDHF 111
Query: 111 IAKCKSA---KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
S K +V AGCV Q + +++ L+G+S+VGVQQ DR+VEVVEETLKG+ VRLL
Sbjct: 112 RGAIDSGLRQGKKVVAAGCVSQATPNVEYLKGLSVVGVQQTDRIVEVVEETLKGNSVRLL 171
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
KK AL LPK+RRN VEI+ IN GCL CTYCKTKHARG LGSY++E LV
Sbjct: 172 GSKKDGRRKAGGAALTLPKIRRNPLVEIIAINTGCLNHCTYCKTKHARGDLGSYSIEELV 231
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV+E+WL+SEDTGAYGRDIG LP LL +VA +P MLR+GMTNPP+
Sbjct: 232 ARAKQAFQEGVREIWLTSEDTGAYGRDIGETLPDLLREMVAVVPE--GCMLRLGMTNPPY 289
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
IL++L+++AE+L HP VYSFLHVPVQSGSD VL+ M REYT + FR V+D L + VPG+
Sbjct: 290 ILDYLEDMAEILSHPRVYSFLHVPVQSGSDPVLAEMKREYTAAQFRIVIDFLRKAVPGIT 349
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDIICGFP ET+EDF +T+ L++EY+FP + I+QFYPRPGTPAA+MK++P+ VVK+R+
Sbjct: 350 IATDIICGFPTETEEDFEETMALVREYRFPSLFINQFYPRPGTPAAKMKRIPTHVVKERT 409
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 445
+ L+ +F+++ Y G G+ + + +TE+A D HLVGH K Y QV
Sbjct: 410 KRLSELFQSYQTYDGRVGQRQAVLVTEVAHDKKHLVGHNKFYEQV 454
>gi|323100040|gb|ADX30521.1| MiaB-like protein 1 [Plutella xylostella]
Length = 542
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/490 (49%), Positives = 312/490 (63%), Gaps = 23/490 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ S P V V + N K ++ + L +PGT+T
Sbjct: 9 IDDIEDLI--SSQDITPKERYASRKNVSVRSRKNNTK----ESEPVEKVILQSVVPGTQT 62
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY+KT+GC+HN SDSEYM G L+A GY LTD+ A +WL+N+ + I
Sbjct: 63 IYVKTWGCAHNNSDSEYMVGLLAAQGYQLTDDKWSAQLWLLNSCTVKNPAEEHFRNEIEL 122
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
++ +VVAGCVPQG+ L G+SIVGV QIDR+VE+VEETLKGH VRL +KK
Sbjct: 123 GQARGIHVVVAGCVPQGAPRAGYLAGLSIVGVHQIDRIVEIVEETLKGHTVRLFGQKKTD 182
Query: 173 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R
Sbjct: 183 DGKKAGGASLQLPKVRKNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARQ 242
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+GV E+WL+SEDTG YGRDIG +LP LL+ VA +P LR+GMTNPP++LEHL
Sbjct: 243 SFKEGVCEIWLTSEDTGTYGRDIGTSLPELLDQPVAAIP--AGCRLRLGMTNPPYMLEHL 300
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+A ++RH VY FLHVPVQSGSD VL+ M REY+ DF VVD L + VPG+ IATDI
Sbjct: 301 PRVAGIMRHSRVYKFLHVPVQSGSDQVLADMKREYSRKDFGYVVDYLRKEVPGITIATDI 360
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFP ET D TV+L ++Y+FP + I+QF+ RPGTPAA M KVP VKKR++EL+
Sbjct: 361 ICGFPTETAADHELTVSLCRQYRFPSLFINQFFARPGTPAANMTKVPGQEVKKRTKELSE 420
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+F ++ PY G + + T+I+ D + VGH + Y QVLVP +G VKITS
Sbjct: 421 LFRSYEPYGHKVGETQEVLDTDISHDKKYFVGHNEFYEQVLVPKEERYMGKMLTVKITSA 480
Query: 466 GRWSVFGEVI 475
++S+ GE I
Sbjct: 481 SKFSMMGEPI 490
>gi|348566232|ref|XP_003468906.1| PREDICTED: LOW QUALITY PROTEIN: CDK5 regulatory subunit-associated
protein 1-like 1-like [Cavia porcellus]
Length = 613
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/470 (48%), Positives = 311/470 (66%), Gaps = 51/470 (10%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC 114
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+NS EAD+WL+N+ + +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENSSEADLWLLNSCTVKNPAEDHF 118
Query: 115 K-SAKKPLVVAGCVPQGSRDLK-------------------------------------- 135
+ S L + G VP G+R +
Sbjct: 119 RNSINFFLQIFGLVPAGNRHSQWYAQAPGISGPAEPVQPRLLGAGVCTDGWLSSDSTGGE 178
Query: 136 ---ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKF 185
L G++ V VQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N
Sbjct: 179 RQEHLXGMAHVPVQQIDRVVEVVEETIKGHSVRLLGQKKDNGKRLGGARLDLPKIRKNPL 238
Query: 186 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 245
+EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYG
Sbjct: 239 IEIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYG 298
Query: 246 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 305
RDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PV
Sbjct: 299 RDIGTSLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPV 356
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
QS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++
Sbjct: 357 QSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVE 416
Query: 366 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI 425
EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ +F ++ PY G +++ +
Sbjct: 417 EYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSQIFHSYNPYDHKIGEKQQVLV 476
Query: 426 TEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
TE + D V H + Y QVLVP + +G V I G+ + G+ +
Sbjct: 477 TEESFDSKFYVAHNRFYEQVLVPKNPSFMGKMVEVDIYESGKHFMKGQPV 526
>gi|115618009|ref|XP_792404.2| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Strongylocentrotus purpuratus]
Length = 556
Score = 453 bits (1166), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/468 (51%), Positives = 324/468 (69%), Gaps = 20/468 (4%)
Query: 25 NAVGVNPK-YNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLS 83
N V PK N+ K R + K S+ IPGT+ +++KT+GCSHN SD EYMAGQL+
Sbjct: 29 NKQDVMPKVLNRKKDRRKNGEDIKADSI---IPGTQKVFVKTWGCSHNNSDGEYMAGQLA 85
Query: 84 AFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKE 136
++GY++TD+S AD+WL+N+ + I K + K LV+AGCVPQG K
Sbjct: 86 SYGYSITDDSSGADVWLLNSCTVKNPAEDHFRNEIQKAQQQGKALVLAGCVPQGQPKAKY 145
Query: 137 LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEIL 189
++GVS++GVQQIDRVVEVVEET+KG+ VRL +KK +LDLPK+RRN VEIL
Sbjct: 146 MQGVSVIGVQQIDRVVEVVEETVKGNTVRLFGQKKQGGKKIGGASLDLPKIRRNPLVEIL 205
Query: 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 249
IN GCL CTYCKTKHARG LGSY E LV R + +GV E+WL+SEDTGAYG DIG
Sbjct: 206 AINTGCLNQCTYCKTKHARGELGSYPPEELVARAKQSFDEGVCEIWLTSEDTGAYGIDIG 265
Query: 250 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 309
V + LL+ +V E+ P+G M+RIGMTNPP+IL+HL+ IA +LRHP VYSFLH+P+QSGS
Sbjct: 266 VTIVELLDQLV-EVIPEG-CMMRIGMTNPPYILDHLEGIARILRHPRVYSFLHIPIQSGS 323
Query: 310 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369
D+VL M REY +DFR +V+ L + VP + IATDIICGFP E+++DF +T++LI+E+KF
Sbjct: 324 DSVLMDMKREYCTADFRKIVEFLRKEVPRVTIATDIICGFPHESEKDFEETLSLIEEFKF 383
Query: 370 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIA 429
P V I+Q++PRPGTPAA+ +VP+ K+R++ LT +F+++ Y G + +TE++
Sbjct: 384 PSVFINQYFPRPGTPAAKWPQVPAQEKKRRTKALTVLFKSYQTYDDKVGERFDVLVTEVS 443
Query: 430 ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 477
D +LV H K Y QVLVP LG V+I SVG+ + G V+ +
Sbjct: 444 HDKQYLVAHNKFYDQVLVPHNKEYLGRILKVEIESVGKHFLMGRVLDV 491
>gi|427797957|gb|JAA64430.1| Putative cdk5 regulatory subunit associated protein 1-like 1,
partial [Rhipicephalus pulchellus]
Length = 541
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/469 (50%), Positives = 316/469 (67%), Gaps = 43/469 (9%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----------- 103
+PGT I++KT+GC+HN SDSEYMAGQL+A GY + D++ AD+WL+N+
Sbjct: 51 LPGTHKIHVKTWGCAHNSSDSEYMAGQLAAKGYTIVDDARSADLWLLNSCTVKNPAEDHF 110
Query: 104 QSAMDTLIAKCKSA-----------------------KKPLVVAGCVPQGSRDLKELEGV 140
+ A++ + + K K +VVAGCV Q + ++ L G+
Sbjct: 111 RGAIEAALHQGKKVVVAGXXNPAEDHFRGAIEAALHQGKKVVVAGCVSQATPNVGYLRGL 170
Query: 141 SIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINV 193
SIVGVQQ DRVVEVVEETLKG+ VRLL KK L LPK+RRN VEI+ IN
Sbjct: 171 SIVGVQQTDRVVEVVEETLKGNSVRLLGSKKEGRRKAGGAPLTLPKIRRNPLVEIIAINT 230
Query: 194 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP 253
GCL CTYCKTKHARG LGSY ++ LV R + +GV+E+WL+SEDTGAYGRDIGV LP
Sbjct: 231 GCLNRCTYCKTKHARGDLGSYPIDELVARAKQAFEEGVREIWLTSEDTGAYGRDIGVTLP 290
Query: 254 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 313
LL +V +P MLR+GMTNPP+IL+HL+++AE+L HP VYSFLHVPVQSGSD VL
Sbjct: 291 DLLREMVQVIPE--GCMLRLGMTNPPYILDHLEDMAEILNHPRVYSFLHVPVQSGSDPVL 348
Query: 314 SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVH 373
+ M REYT++ FR+VVD L + VPG+ IATDIICGFP ET+EDF +T+ L+++Y+FP +
Sbjct: 349 TEMRREYTVAQFRSVVDHLRKAVPGITIATDIICGFPTETEEDFEETMQLVRDYEFPSLF 408
Query: 374 ISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGI 433
I+QFYPRPGTPAA MK++P+ +VK+R+++++ +F+++ PY G + +T+ A D
Sbjct: 409 INQFYPRPGTPAASMKRIPTHIVKERTKQVSELFQSYVPYSHRVGERHTVLVTDTAHDQK 468
Query: 434 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 482
HLVGH K Y Q+L+P +G V+IT G+ + V+ I +D
Sbjct: 469 HLVGHNKFYEQILLPMDDQYMGQLVDVEITGGGKHFMQCNVVGINTALD 517
>gi|302846252|ref|XP_002954663.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
gi|300260082|gb|EFJ44304.1| hypothetical protein VOLCADRAFT_64943 [Volvox carteri f.
nagariensis]
Length = 401
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/335 (63%), Positives = 269/335 (80%), Gaps = 9/335 (2%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYAL-TDNSEEADIWLINT-------QSA 106
+PGT+ +++KTFGCSHN SDSEYMAGQL +GY + AD+WLIN+ Q+
Sbjct: 3 VPGTQAVWVKTFGCSHNISDSEYMAGQLQDYGYRRESAGCNPADLWLINSCTVKGPSQAG 62
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
M +LIA ++ K L+VAGCVPQG + L EL+GVS++GV QIDRVVE VEETL+G+ VRL
Sbjct: 63 MSSLIAVGRAGGKRLLVAGCVPQGDKRLPELQGVSVLGVTQIDRVVEAVEETLRGNTVRL 122
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L +K+LP LDLPKVRRN+ +EI+PI+ GCLGACTYCKTKHARGHLGSY +LV RVR
Sbjct: 123 LAKKELPRLDLPKVRRNRHIEIVPISTGCLGACTYCKTKHARGHLGSYDPAALVERVRQA 182
Query: 227 IAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
AD V+E+W+SSEDTGAYGRDIG +LP LL+A++A LPPDG TMLR+GMTNPP++LEHL
Sbjct: 183 AADPWVREIWISSEDTGAYGRDIGCSLPELLDALIAVLPPDGRTMLRVGMTNPPYVLEHL 242
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+ ++ LRHPCV+S+LHVPVQSGSDAVL +M REYT+++FR VVDTL+ VPGM++ATDI
Sbjct: 243 EALSAALRHPCVFSYLHVPVQSGSDAVLDSMKREYTVAEFRRVVDTLLAGVPGMELATDI 302
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380
I FPGE+ D +T+ L+++Y+FP HISQFYPR
Sbjct: 303 ITAFPGESPGDHVRTLELLRQYRFPHTHISQFYPR 337
>gi|355677418|gb|AER95991.1| CDK5 regulatory subunit associated protein 1-like 1 [Mustela
putorius furo]
Length = 411
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/409 (54%), Positives = 291/409 (71%), Gaps = 21/409 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
+EDIED+++ G P R V PK K + + + S S IPG +
Sbjct: 10 LEDIEDIVSQ---GDLKPQDRHSARK-HVVPKARKRNTQKYLQEENSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 65 IWLRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY +E LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIEELVERAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTNLPALLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E VPG+ +ATDII
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKEKVPGITLATDII 362
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
CGFPGETD+DF +TV L++EY+FP + I+QFYPRPGTPAA+M +VP+ V
Sbjct: 363 CGFPGETDQDFQETVKLVEEYRFPSLFINQFYPRPGTPAAKMAQVPAQV 411
>gi|92096943|gb|AAI14872.1| CDKAL1 protein [Bos taurus]
Length = 416
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/359 (58%), Positives = 274/359 (76%), Gaps = 16/359 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
ILEHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+
Sbjct: 297 ILEHLEEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGIT 356
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V KK+
Sbjct: 357 IATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKKK 415
>gi|342181579|emb|CCC91059.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 578
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/442 (49%), Positives = 302/442 (68%), Gaps = 20/442 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD---- 108
P IPG T+++ TFGC HN SD EYMAGQL+ G+ +TD +ADI+L+N+ + +
Sbjct: 82 PGIPGNATVFVHTFGCGHNMSDGEYMAGQLAQSGFQITDEFSQADIYLLNSCTVKNPSEE 141
Query: 109 ---TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
++ + ++ KPLVVAGCVPQ D K+ VS++GV+ IDRV VV ETL+G+ VR
Sbjct: 142 HFVNMMNRVRATGKPLVVAGCVPQADPDNKQWAEVSVIGVRSIDRVSYVVNETLQGNCVR 201
Query: 166 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
L+ KLPALDLPKVRRNK++EI+PI+VGCL CTYCKTK+ARG L SY
Sbjct: 202 LIGSDKEQLRVGESDKLPALDLPKVRRNKYIEIIPISVGCLNCCTYCKTKYARGDLRSYP 261
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 274
V +VGRVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ AEL +GS MLR+G
Sbjct: 262 VSEIVGRVREVVDDGVKEIRLTSEDSGAYGIDIGTDIVQLLRAVAAEL--EGSDVMLRVG 319
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
M+NPP++L H+ + A +LRHP VY F+H+PVQSGS+ +L M REYT+ +F +D +
Sbjct: 320 MSNPPYLLRHVDDFASILRHPNVYEFVHIPVQSGSNRILKTMLREYTVEEFCKCMDAIRT 379
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
VP + +ATDIIC FPGE + ++ +T+ L + KF ++I++FYPR TPAA MK++P+
Sbjct: 380 AVPRVTLATDIICAFPGEGEAEWRETMRLCEVAKFGVINITRFYPRRNTPAAAMKQIPTD 439
Query: 395 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+ K+R+ ELT+ F ++ Y M G V ++ + E A D HLVGHTK YVQVLV + +
Sbjct: 440 IAKQRTTELTNFFNSYRTYDAMVGDVCQVTLLETAHDKHHLVGHTKNYVQVLVDPSEARM 499
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G V I S ++SV G V++
Sbjct: 500 GERVTVVIVSATKYSVTGRVLR 521
>gi|261328871|emb|CBH11849.1| tRNA modification enzyme, putative [Trypanosoma brucei gambiense
DAL972]
Length = 535
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/442 (49%), Positives = 297/442 (67%), Gaps = 20/442 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD---- 108
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+ + +
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 109 ---TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
+++ + + KPL+VAGCVPQ K+ VS+VGV+ IDRV VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDRVSYVVQEALQGNCVR 164
Query: 166 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNDSNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 274
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLQAVAVEL--EGTDVMLRVG 282
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
VP +ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR TPAA MK++P+
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402
Query: 395 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
V K R+ ELT+ F ++ + M G V + + E A D HLVGHTK YVQVLV +
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVDPAQARM 462
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G S +V ITS ++SV G V++
Sbjct: 463 GESVVVVITSATKYSVMGRVLR 484
>gi|66475406|ref|XP_627519.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
gi|32398737|emb|CAD98697.1| conserved hypothetical transmembrane protein [Cryptosporidium
parvum]
gi|46228975|gb|EAK89824.1| 2-methylthioadenine synthetase; MiaB [Cryptosporidium parvum Iowa
II]
Length = 543
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/447 (48%), Positives = 300/447 (67%), Gaps = 28/447 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+ Q +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 168 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 273
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 394 AVVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHLVGHTKGYVQVLVP 448
V K RS E+T+ F++F Y+ + +V ++W E + H VGHTK Y +VLV
Sbjct: 456 GVSKSRSSEITNTFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVN 515
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVI 475
N+LG A+VK+ +W + G VI
Sbjct: 516 MDNNLLGKCAMVKLIKPYKWHIEGIVI 542
>gi|242021866|ref|XP_002431364.1| radical sam protein, putative [Pediculus humanus corporis]
gi|212516632|gb|EEB18626.1| radical sam protein, putative [Pediculus humanus corporis]
Length = 442
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/421 (53%), Positives = 292/421 (69%), Gaps = 27/421 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIEDL+ P ++ + V K +P ++DN IP +
Sbjct: 8 VDDIEDLIVSRDSAPKPNRTKITYRSKKVK-KDEYVQPVIYDN----------PIPESHK 56
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY+KT+GC+HN SDSEYMAG LS++GY L ++ E AD+WL+N+ +S I K
Sbjct: 57 IYIKTWGCTHNSSDSEYMAGLLSSYGYNLVEDPEIADLWLLNSCTVKNPAESHFRNEIEK 116
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ K +V AGCVPQG+ ++ +SI+G+ IDRVVEVVEETLKGH VRLL +KK
Sbjct: 117 GRKLGKHIVAAGCVPQGAPKQNYIQNLSIIGIHNIDRVVEVVEETLKGHSVRLLSQKKEN 176
Query: 174 A-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L LPKVR+N ++EI+PI+ GCL CTYCKTKHARG LGSY VE +V R +
Sbjct: 177 GKKLGGANLLLPKVRKNPYIEIIPISTGCLNQCTYCKTKHARGELGSYPVEEIVERAKQA 236
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
++GV E+WL+SEDTGAYG+DIG +LP LL +V E+ PD M R+GMTNPP+ILEHL+
Sbjct: 237 FSEGVVELWLTSEDTGAYGKDIGASLPELLWKVV-EVIPDNCRM-RVGMTNPPYILEHLE 294
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+A++L H VYSFLHVPVQSGSDAVLS M REYT+SDF+ VVD L VPG+ IATDII
Sbjct: 295 EMAKILNHEKVYSFLHVPVQSGSDAVLSDMKREYTISDFKHVVDFLRLRVPGITIATDII 354
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP ET++DF +T++L + YKFP + I+QFYPRPGTPAA+M KVP VK+R+++L +
Sbjct: 355 CGFPTETEKDFEETLSLCETYKFPSLFINQFYPRPGTPAAKMVKVPMHEVKQRTKKLADL 414
Query: 407 F 407
F
Sbjct: 415 F 415
>gi|426351722|ref|XP_004043378.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like, partial [Gorilla gorilla
gorilla]
Length = 440
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/398 (53%), Positives = 283/398 (71%), Gaps = 16/398 (4%)
Query: 92 NSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVG 144
N+ +AD+WL+N+ + I K + K +V+AGCVPQ L+G+SI+G
Sbjct: 1 NASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIG 60
Query: 145 VQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLG 197
VQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN GCL
Sbjct: 61 VQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLN 120
Query: 198 ACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 257
ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL
Sbjct: 121 ACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLW 180
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD++L M
Sbjct: 181 KLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSILMEMK 238
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QF
Sbjct: 239 REYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQF 298
Query: 378 YPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVG 437
YPRPGTPAA+M++VP+ V K+R+++L+ VF +++PY G +++ +TE + D V
Sbjct: 299 YPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYDHKIGERQQVLVTEESFDSKFYVA 358
Query: 438 HTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
H + Y QVLVP +G V I G+ + G+ +
Sbjct: 359 HNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 396
>gi|432908314|ref|XP_004077806.1| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Oryzias latipes]
Length = 494
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/427 (51%), Positives = 290/427 (67%), Gaps = 22/427 (5%)
Query: 89 LTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS 141
+ D+ EAD+WL+N+ + I K + K +VVAGCVPQ + L+ +S
Sbjct: 25 ILDDPAEADLWLLNSCTVKNPAEDHFRNSIKKAQEQDKKVVVAGCVPQAQPRMDYLKSLS 84
Query: 142 IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVG 194
I+GVQQIDRVVEVV+E +KGH VRLL +KK LDLPK+R+N +EI+ IN G
Sbjct: 85 IIGVQQIDRVVEVVDEAVKGHSVRLLGQKKEGGRRLGGARLDLPKIRKNPLIEIISINTG 144
Query: 195 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 254
CL ACTYCKTKHARG L SY +E LV RVR +GV E+WL+SEDTGAYGRDIG +LP
Sbjct: 145 CLNACTYCKTKHARGDLASYPIEELVKRVRQSFQEGVCEIWLTSEDTGAYGRDIGTDLPT 204
Query: 255 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 314
LL +V ++P DG+ MLR+GMTNPP+ILEHL E+A++L HP VY+FLHVPVQS SD+VL
Sbjct: 205 LLWRLVEQIP-DGA-MLRLGMTNPPYILEHLGEMAKILNHPRVYAFLHVPVQSASDSVLM 262
Query: 315 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374
M REY + DF+ VVD L E VPG+ IATDIICGFPGET+EDF +T+ L+K Y+FP + I
Sbjct: 263 DMKREYCIDDFKRVVDFLKERVPGVTIATDIICGFPGETEEDFQETLELVKLYRFPSLFI 322
Query: 375 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 434
+QFYPRPGTPAA+M++VP+ V K+R+REL+ +F ++ PY G ++ + +TE + D +
Sbjct: 323 NQFYPRPGTPAAKMEQVPAQVKKQRTRELSQLFHSYNPYDHKVGEMQHVLVTEESFDAQY 382
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQ 494
V H K Y QVLVP G V+I G+ + G V+D N I++
Sbjct: 383 YVAHNKFYEQVLVPKKVEFKGKMIEVEIYEAGKHFMKG------RPVEDSKPFNPSIAAP 436
Query: 495 VRQDKCS 501
++Q + S
Sbjct: 437 LQQGEVS 443
>gi|72390349|ref|XP_845469.1| tRNA modification enzyme [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359495|gb|AAX79931.1| tRNA modification enzyme, putative [Trypanosoma brucei]
gi|70802004|gb|AAZ11910.1| tRNA modification enzyme, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 535
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/442 (49%), Positives = 296/442 (66%), Gaps = 20/442 (4%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD---- 108
P IPG TI++ TFGC HN SD EYMAGQL GY +TD +AD +L+N+ + +
Sbjct: 45 PGIPGNATIFVHTFGCGHNVSDGEYMAGQLVESGYNVTDEFGQADAYLLNSCTVKNPSEE 104
Query: 109 ---TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
+++ + + KPL+VAGCVPQ K+ VS+VGV+ ID V VV+E L+G+ VR
Sbjct: 105 HFVSMMNRVRDTGKPLIVAGCVPQADPTNKQWGDVSVVGVRSIDCVSYVVQEALQGNCVR 164
Query: 166 LL----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
LL +LPALDLPKVRRNK++EI+PI+VGCL CTYCKTK ARG L SY
Sbjct: 165 LLGETEDQRQSNESNELPALDLPKVRRNKYIEIIPISVGCLNNCTYCKTKQARGDLRSYP 224
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIG 274
VE +V RVR V+ DGVKE+ L+SED+GAYG DIG ++ LL A+ EL +G+ MLR+G
Sbjct: 225 VEVIVDRVREVVRDGVKEIRLTSEDSGAYGIDIGTDVVYLLRAVAVEL--EGTDVMLRVG 282
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
M+NPP++L H+ A VL+HP VY F+H+PVQSGSD++L M REYT+ +F +D++
Sbjct: 283 MSNPPYLLRHVDGFATVLKHPNVYEFVHIPVQSGSDSILQTMLREYTVEEFFMCIDSIRA 342
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
VP +ATDIIC FPGE + ++ +T+ L K KF ++I++FYPR TPAA MK++P+
Sbjct: 343 AVPKATVATDIICAFPGEGESEWQETMELCKRAKFEVINITRFYPRRNTPAAAMKQIPTD 402
Query: 395 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
V K R+ ELT+ F ++ + M G V + + E A D HLVGHTK YVQVLV +
Sbjct: 403 VAKHRTTELTNFFNSYRTFDSMVGEVHNVTLLETAHDKHHLVGHTKNYVQVLVDPAQARM 462
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G S +V ITS ++SV G V++
Sbjct: 463 GESVVVVITSATKYSVMGRVLR 484
>gi|67623743|ref|XP_668154.1| transmembrane protein [Cryptosporidium hominis TU502]
gi|54659343|gb|EAL37924.1| transmembrane protein [Cryptosporidium hominis]
Length = 543
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/447 (48%), Positives = 300/447 (67%), Gaps = 28/447 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+ Q +
Sbjct: 98 VPGIAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 168 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTK +RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEMSLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKQSRGDLGS 277
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 273
Y +E+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPIETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 394 AVVKKRSRELTSVFEAF--TPYLGM---EGRVERIWITEIAADGIHLVGHTKGYVQVLVP 448
V K RS E+T++F++F Y+ + +V ++W E + H VGHTK Y +VLV
Sbjct: 456 GVSKGRSSEITNIFQSFNHNEYIFENLPDDKVVKVWFIEHSERSNHTVGHTKNYNKVLVN 515
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVI 475
N+LG A+VK+ +W + G VI
Sbjct: 516 MDSNLLGKCAMVKLIKPYKWHIEGIVI 542
>gi|326429727|gb|EGD75297.1| cdk5 regulatory subunit associated protein 1 [Salpingoeca sp. ATCC
50818]
Length = 530
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/486 (45%), Positives = 318/486 (65%), Gaps = 25/486 (5%)
Query: 2 EDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETI 61
++IE+ AG GG RLP + V + + K R+ + + G + +PG +
Sbjct: 3 DEIEEAAAGLVGGVRRT--RLPGDGVAI-----QQKRRVPEGDRVEQGKDAGFVPGCACV 55
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
Y++T+GCSHN SD EYMAG LSA GY + + AD+W++N+ + + I +
Sbjct: 56 YIRTWGCSHNTSDGEYMAGVLSAAGYEIVKDKMTADLWILNSCTVKTPSEDTFNNAIREG 115
Query: 115 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
+ K LV+AGCV Q K +G+SIVG+ QIDRV+EVVEETL+G VRLL +K A
Sbjct: 116 QKLGKKLVLAGCVAQAQPRGKMTQGLSIVGIHQIDRVLEVVEETLQGRTVRLLSKKSSGA 175
Query: 175 ----LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L +PK+RRN+ +EI+PIN GCL CTYCKTKHARG L SY + +V RVR V+A+G
Sbjct: 176 GGAPLAMPKIRRNELIEIIPINTGCLNQCTYCKTKHARGQLNSYPADEIVARVRQVVAEG 235
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
V E+WL+SEDTG YGRD + LL I+ E+ PDG MLR+GMTNPP+ILEHL+E+A+
Sbjct: 236 VVEIWLTSEDTGTYGRDRDDTIVNLLWKII-EVLPDG-VMLRVGMTNPPYILEHLEEMAK 293
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+L HP VY+FLH+P+Q+ SDAVL+ M REY +F +VD L E VP + IATDIICGFP
Sbjct: 294 ILNHPRVYAFLHIPIQAASDAVLTTMKREYNCEEFCHIVDFLRERVPNVTIATDIICGFP 353
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
GET+EDF +T++L ++YKFP + I+Q + P +++ A VKKR++ L+ +F+++
Sbjct: 354 GETEEDFQETMDLCEKYKFPSLFINQAHLLPA-----WRELIPATVKKRTKRLSELFQSY 408
Query: 411 TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 470
PY G+ +R+ +T+++ DG + V H K + QVLVP ++G V IT+ G+ +
Sbjct: 409 LPYEHKLGQRQRVLVTDVSTDGNYFVAHNKSFDQVLVPRRPEIMGKMITVDITATGKHFL 468
Query: 471 FGEVIK 476
G V++
Sbjct: 469 MGRVVE 474
>gi|407851980|gb|EKG05664.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/439 (47%), Positives = 294/439 (66%), Gaps = 18/439 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD------ 108
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+ + +
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 109 -TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 168 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDIKTDIVCLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAAILRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFHECVHRIRSVVP 343
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 398 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+R+ ELT F ++ M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 404 RRTSELTEFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 458 ALVKITSVGRWSVFGEVIK 476
V I S ++SV G V++
Sbjct: 464 VTVVIMSTTKYSVVGRVLR 482
>gi|71661088|ref|XP_817570.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70882770|gb|EAN95719.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/439 (47%), Positives = 295/439 (67%), Gaps = 18/439 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD------ 108
IP T+++ TFGCSHN SD EYMAG L+ GY +TD +AD++L+N+ + +
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 109 -TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 168 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
KLP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDFNKLPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVLRVRSVLKEGVKEIRITSEDVGAYGIDINTDIICLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 398 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+R+ ELT+ F ++ M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 404 RRTSELTAFFNSYRTLDHMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 458 ALVKITSVGRWSVFGEVIK 476
V I S ++SV G V++
Sbjct: 464 VTVVIMSTTKYSVVGRVLR 482
>gi|209878518|ref|XP_002140700.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
gi|209556306|gb|EEA06351.1| radical SAM domain-containing protein [Cryptosporidium muris RN66]
Length = 548
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/467 (44%), Positives = 301/467 (64%), Gaps = 43/467 (9%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSA 106
K+PG I M+ FGC+HN+SDSE M G L +GY + + ++ D+ +IN+ + +
Sbjct: 83 KVPGIGRIMMRNFGCNHNRSDSESMNGLLVEYGYEIVNELDDCDLIVINSCTVKSPSEMS 142
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
L+ + KK +VV GC+PQ R L L+ VS++GV R+VE+VE TL+G+ V +
Sbjct: 143 CRNLVETALNKKKFVVVTGCIPQAERTLPWLKNVSVLGVSYTHRIVEIVELTLQGNIVEM 202
Query: 167 LHRK------------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR 208
+ +LP L+LPK+R+N VEI+ ++VGCLG CTYCKTK++R
Sbjct: 203 ISMNSDLSAIGTTKKQDKATFSRLPPLNLPKIRKNPLVEIITVSVGCLGNCTYCKTKYSR 262
Query: 209 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268
G+LGSYT+E+++ RV+T + +G+K++WL+SEDTGAYG+DIG NL L+ I+ +PPD
Sbjct: 263 GNLGSYTIETILNRVKTSLKEGIKQIWLTSEDTGAYGKDIGTNLSSLIYQILNIIPPD-- 320
Query: 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 328
M+RIGMTNPP+IL ++++ EVL HP V+ FLH+PVQSGS+ VL+ M R+YT DF +
Sbjct: 321 VMIRIGMTNPPYILNQIQDMVEVLSHPNVFEFLHIPVQSGSNKVLTNMRRDYTREDFCKL 380
Query: 329 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388
VD + + + IATDIICGFPGET+ED TV LIK+YKFP ++IS+FYPRPGTPAA+M
Sbjct: 381 VDEISSQLSLITIATDIICGFPGETEEDHQDTVELIKKYKFPVINISKFYPRPGTPAAKM 440
Query: 389 KKVPSAVVKKRSRELTSVFEA----------------FTPYLGMEGRVERIWITEIAADG 432
K VP+ + K+RS E+T++ + + + + R+W E +
Sbjct: 441 KAVPNGISKRRSLEITNILHSLKYNEELLEKLRLNMKYNLSTSISDIIVRVWFIENSDIS 500
Query: 433 IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 479
IH +GHTK Y +V+V +LG ALVK+ RW GEVI +L+
Sbjct: 501 IHTIGHTKQYTKVIVEKDDKLLGKVALVKLIKPERWHFEGEVISLLD 547
>gi|268535520|ref|XP_002632893.1| Hypothetical protein CBG15101 [Caenorhabditis briggsae]
Length = 437
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/429 (49%), Positives = 300/429 (69%), Gaps = 13/429 (3%)
Query: 55 IPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSA 106
+PG + ++++T+GCSHN SDSEYMAG L GY + E AD+W++N+ +
Sbjct: 4 VPGVGQKVWVRTWGCSHNTSDSEYMAGLLHKAGYDVLKEGENADVWVLNSCTVKTPSEQQ 63
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
+ L+ + + K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++VRL
Sbjct: 64 ANNLVVQGQEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVRL 123
Query: 167 LHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
L R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV + R
Sbjct: 124 LTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVEQARA 183
Query: 226 VIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
D GVKE+WL+SED GA+GRDI + LP LLNA+V ++ PDG M+R+GMTNPP+IL+H
Sbjct: 184 AFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALV-KVIPDGC-MMRLGMTNPPYILDH 241
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L+EIAE+L +P VY+FLH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD
Sbjct: 242 LEEIAEILNNPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIENVPNIYIATD 301
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
+I FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++
Sbjct: 302 MILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMS 361
Query: 405 SVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
+F ++T + G + + +TEIAAD IH VGH K Y Q+LVP +G V+IT
Sbjct: 362 ELFRSYTRFTEDRIGEIHNVLVTEIAADKIHGVGHNKSYEQILVPLEHCKMGEWIEVRIT 421
Query: 464 SVGRWSVFG 472
SV ++S+
Sbjct: 422 SVTKFSMIS 430
>gi|312076345|ref|XP_003140819.1| CDK5 regulatory subunit-associated protein 1-like 1 [Loa loa]
Length = 478
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/464 (46%), Positives = 307/464 (66%), Gaps = 26/464 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+ ++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 172
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEIL 283
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
T DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ + ++R+ E++++F +++
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSYSR 403
Query: 413 YLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
Y G R+ + E+A D H VGH K Y L+ S +LG
Sbjct: 404 YDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLISSKKCLLG 447
>gi|393907189|gb|EFO23252.2| MiaB-like tRNA modifying enzyme [Loa loa]
Length = 465
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/464 (46%), Positives = 307/464 (66%), Gaps = 26/464 (5%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
MEDIED++ P L N V V + + + + +PGT+
Sbjct: 1 MEDIEDVIR------VPTAVNLRQNHVIVRKRLKGDGEPFYGDSF---------VPGTQK 45
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY++T+GC+HN SDSE MAG LS G+ LT+ E+A +W++N+ ++ ++ + +
Sbjct: 46 IYIRTWGCTHNTSDSEQMAGLLSEAGHQLTNKKEDASLWILNSCTVKTPSETQLENTVKE 105
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 172
+ K ++VAGCV Q +L+ LEG+SIVGV+QI+ V + VEETLKG+ VR L RK
Sbjct: 106 ARKLNKFIIVAGCVSQAEPNLRFLEGISIVGVKQIECVTQAVEETLKGNCVRFLSQRKPN 165
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
L LPK+R+NKF+EIL I+ GCL CTYCKTK ARG+L S+ ++SL+ R R ADG K
Sbjct: 166 SNLLLPKIRKNKFIEILAISSGCLNHCTYCKTKSARGNLVSFPLDSLLERARNAFADGCK 225
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+WL+SED GA+GRDI + LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L
Sbjct: 226 ELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIPEGC-MLRLGMTNPPYILDFLEEISEIL 283
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
HP VYSFLH+PVQS SDAVL+ M REYT SDF VVD + + VP + IATD IC +P E
Sbjct: 284 NHPRVYSFLHIPVQSASDAVLADMRREYTCSDFCRVVDYMTQNVPNIYIATDFICAYPTE 343
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
T DF +++ L+++Y+FP + I+QFY R GTPAA +KK+ + ++R+ E++++F +++
Sbjct: 344 TKSDFEESMALVRKYRFPSLFINQFYSRIGTPAANLKKIDTVEARRRTAEMSTLFRSYSR 403
Query: 413 YLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
Y G R+ + E+A D H VGH K Y L+ S +LG
Sbjct: 404 YDKKRIGEKHRVLVCELATDQQHYVGHNKYYEHFLISSKKCLLG 447
>gi|71664178|ref|XP_819072.1| tRNA modification enzyme [Trypanosoma cruzi strain CL Brener]
gi|70884358|gb|EAN97221.1| tRNA modification enzyme, putative [Trypanosoma cruzi]
Length = 530
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/439 (47%), Positives = 293/439 (66%), Gaps = 18/439 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD------ 108
IP T+++ TFGCSHN SD EYMAG L+ GY +TD AD++L+N+ + +
Sbjct: 45 IPSNATVFIHTFGCSHNVSDGEYMAGLLAQAGYRVTDVFNGADVYLLNSCTVKNPSEEHF 104
Query: 109 -TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+GH VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGHCVRLI 164
Query: 168 ----------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
+LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GVNEHANNKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVSLLRAIVKEIQ-GTEVMMRVGMSN 283
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REYTL +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYTLEEFYECVHRIRSVVP 343
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
+ +ATDIIC FPGE + ++ +T+ L +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMELCDHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 398 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+R+ ELT F ++ M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 404 RRTSELTEFFNSYRTLDQMVGEVHSVALLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 458 ALVKITSVGRWSVFGEVIK 476
V I S ++SV G V++
Sbjct: 464 VTVVIMSTTKYSVVGRVLR 482
>gi|90083062|dbj|BAE90613.1| unnamed protein product [Macaca fascicularis]
Length = 464
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/382 (53%), Positives = 272/382 (71%), Gaps = 9/382 (2%)
Query: 101 INTQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 160
+ Q I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+K
Sbjct: 1 MKIQDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIK 60
Query: 161 GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
GH VRLL +KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L S
Sbjct: 61 GHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLAS 120
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 273
Y ++ LV R + +GV E+WL+SEDTGAYGRDIG NLP LL +V E+ P+G+ MLR+
Sbjct: 121 YPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNLPTLLWKLV-EVIPEGA-MLRL 178
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQ SD+VL M REY ++DF+ VVD L
Sbjct: 179 GMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQPASDSVLMEMKREYCVADFKRVVDFLK 238
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393
E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+
Sbjct: 239 EKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPA 298
Query: 394 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
V K+R+++L+ VF +++PY G +++ +TE + D V H + Y QVLVP
Sbjct: 299 QVKKQRTKDLSRVFHSYSPYNHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAF 358
Query: 454 LGTSALVKITSVGRWSVFGEVI 475
+G V I G+ + G+ +
Sbjct: 359 MGKMVEVDICESGKHFMKGQPV 380
>gi|308497879|ref|XP_003111126.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
gi|308240674|gb|EFO84626.1| hypothetical protein CRE_03881 [Caenorhabditis remanei]
Length = 560
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/493 (45%), Positives = 319/493 (64%), Gaps = 37/493 (7%)
Query: 3 DIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGT-ETI 61
DIED++ G G G+ + I PK ++ P ++ +PG + +
Sbjct: 2 DIEDIV-GRGPVGSRDAAEIKIRTRKQLPKEKEDVP-----------NVDSMVPGVGQKV 49
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GCSHN SDSEYMAG L GY + E AD+W++N+ + + L+ +
Sbjct: 50 WVRTWGCSHNTSDSEYMAGLLQQAGYDVLKEGEAADVWILNSCTVKTPSEQQANNLVVQG 109
Query: 115 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV---------- 164
+ K +++AGCV Q + L+ VSIVGV+QIDR+VEVVEETLKG++V
Sbjct: 110 QEQGKKIIMAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVEETLKGNKVLPTILRTSRL 169
Query: 165 --RLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
RLL R + AL LPK+R+N+ +E+L I+ GCL CTYCKTK ARG L SY +E LV
Sbjct: 170 HVRLLTRNRPDALLSLPKMRKNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLEDLVE 229
Query: 222 RVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+ R D GVKE+WL+SED GA+GRDI + LP LLNA+V +P DGS M+R+GMTNPP+
Sbjct: 230 QARAAFHDEGVKELWLTSEDLGAWGRDINLVLPDLLNALVKVIP-DGS-MMRLGMTNPPY 287
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
IL+HL+EIAE+L HP VY+FLH+PVQS SDAVL+ M REY+ F + D +I+ VP +
Sbjct: 288 ILDHLEEIAEILNHPKVYAFLHIPVQSASDAVLTDMKREYSRRHFEQIADYMIKHVPNIY 347
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATD+I FP ET EDF +++ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+
Sbjct: 348 IATDMILAFPTETLEDFEESMELVRKYKFPSLFINQYYPRSGTPAARLKKIDTIEARKRT 407
Query: 401 RELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
++ +F ++T + G + + +TE+AAD +H VGH K Y Q+LVP +G
Sbjct: 408 AAMSELFRSYTRFTEDRIGEIHNVLVTEVAADKLHGVGHNKSYEQILVPLEHCKMGEWIE 467
Query: 460 VKITSVGRWSVFG 472
V+ITSV ++S+
Sbjct: 468 VRITSVTKFSMIS 480
>gi|407416808|gb|EKF37819.1| tRNA modification enzyme, putative [Trypanosoma cruzi marinkellei]
Length = 530
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/439 (47%), Positives = 297/439 (67%), Gaps = 18/439 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD------ 108
IP T+++ TFGCSHN SD EYMAG LS GY +TD +AD++L+N+ + +
Sbjct: 45 IPSNATVFVHTFGCSHNVSDGEYMAGLLSQAGYRVTDVFNDADVYLLNSCTVKNPSEEHF 104
Query: 109 -TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+++ + ++ KPLVVAGCVPQ + + VS++GV+ IDRV EV+ E L+G+ VRL+
Sbjct: 105 ISMMNRVRATGKPLVVAGCVPQADPRNTQWDDVSVIGVRNIDRVGEVIHEALQGNCVRLI 164
Query: 168 ----HRKK------LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
H K LP LDLPK+RRN+F+EI+PI+VGCL CTYCKTK ARG L S+ +E
Sbjct: 165 GMNEHANKKQDPNELPPLDLPKIRRNRFIEIIPISVGCLNHCTYCKTKQARGDLRSWPIE 224
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
S+V RVR+V+ +GVKE+ ++SED GAYG DI ++ LL AIV E+ M+R+GM+N
Sbjct: 225 SIVSRVRSVLKEGVKEIRITSEDVGAYGIDINTDIVCLLRAIVKEVQ-GTEVMVRVGMSN 283
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
PP++L HL + A +LRHP VY F+H+P+QSGS+ +L+AM REY L +F V + +VP
Sbjct: 284 PPYLLRHLDDFAALLRHPNVYEFVHIPIQSGSNRILNAMQREYNLEEFYECVHRIRSVVP 343
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
+ +ATDIIC FPGE + ++ +T+ + + +FP ++I++FYPR TPAA MK++P+ V K
Sbjct: 344 NVTLATDIICAFPGEGEAEWRETMEVCEHVRFPVLNITRFYPRRNTPAASMKQIPTDVAK 403
Query: 398 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+R+ ELT F ++ + M G V + + E A D HLVGHTK YVQVLV LG +
Sbjct: 404 QRTSELTEFFNSYRTFDHMVGEVHSVTLLETAHDKHHLVGHTKAYVQVLVDPQEARLGET 463
Query: 458 ALVKITSVGRWSVFGEVIK 476
V ITS ++SV G V++
Sbjct: 464 VTVVITSTTKYSVVGRVLR 482
>gi|449681850|ref|XP_002155994.2| PREDICTED: threonylcarbamoyladenosine tRNA
methylthiotransferase-like [Hydra magnipapillata]
Length = 474
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/394 (52%), Positives = 274/394 (69%), Gaps = 16/394 (4%)
Query: 96 ADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQI 148
AD+WL+N+ + + I K + K +V+AGCVPQG + ++G+SIVGVQQI
Sbjct: 8 ADLWLLNSCTVKNPAEESFKNEIKKAQELNKYVVLAGCVPQGQPRGEFMKGLSIVGVQQI 67
Query: 149 DRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTY 201
DRVVEVVEETLKGH VRL +KKL L+LPK+R+N +EI+ IN GCL CTY
Sbjct: 68 DRVVEVVEETLKGHSVRLFGKKKLNGKKIGGAPLNLPKIRKNPLIEIIAINTGCLNQCTY 127
Query: 202 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261
CKTKHARG LGSY E +V RV+ +GV E+WL+SEDTGAYG+DIGV LP LL I+
Sbjct: 128 CKTKHARGELGSYPPEEIVARVKQSFEEGVVEIWLTSEDTGAYGKDIGVTLPELLWQIIE 187
Query: 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 321
+PP G ++RIGMTNPP+I E+L E+A++L HP VYSFLH+PVQSGS+ VL M REY
Sbjct: 188 VIPPGG--LMRIGMTNPPYIKEYLDEMAKILNHPRVYSFLHIPVQSGSNNVLHDMKREYR 245
Query: 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 381
+ DF+ V+ L + VP + IATDIICGFP ET EDF + L++EY+FP + I+QF+PRP
Sbjct: 246 IEDFKNTVNFLKDRVPRLTIATDIICGFPTETLEDFADSCALVQEYQFPSLFINQFFPRP 305
Query: 382 GTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKG 441
GTPAA MK+VP+ VK+R+R ++ +F+++ PY G + I ITE A D +H VGH K
Sbjct: 306 GTPAANMKRVPTDEVKRRTRVISDIFQSYLPYENQLGEHQTILITENAKDAVHFVGHNKF 365
Query: 442 YVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
Y QVL+ + +++G V+I G+ + G ++
Sbjct: 366 YDQVLIKAEPDLMGKLVEVEIYETGKHFIKGRLV 399
>gi|324507132|gb|ADY43031.1| CDKAL1-like protein [Ascaris suum]
Length = 535
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/435 (50%), Positives = 301/435 (69%), Gaps = 18/435 (4%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PGTETI+++T+GCSHN SDSEYM G LS GY + E A +W++N+ + +
Sbjct: 44 VPGTETIFVRTWGCSHNTSDSEYMTGLLSMAGYNIISTKENASLWVLNSCTVKTPSEDQL 103
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ + K K AKK +VVAGCV Q + + L GVS+VGV+QIDR+VEVVEETLKG+ VRLL
Sbjct: 104 ENEVKKAKEAKKFIVVAGCVSQADPNAEFLRGVSLVGVKQIDRIVEVVEETLKGNCVRLL 163
Query: 168 HRKK-LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
RK+ L LPK+RRN +E+L ++ GCL CTYCKTK ARG L SY E LV +
Sbjct: 164 SRKRPEQKLSLPKMRRNNLIEVLAVSSGCLNNCTYCKTKQARGDLVSYPPEELVEQAVRA 223
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
++G +E+WL+SED GA+GRD G+ LP LL A+V ++ P+G M+R+GMTNPP+IL+ L
Sbjct: 224 FSEGCREIWLTSEDLGAWGRDFGMVLPDLLKAMV-DVIPEG-CMMRLGMTNPPYILDFLD 281
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
EIAE+L HP VYSFLH+PVQSGSDAVL MNREY+ +DF VVD +++ VP + IATD I
Sbjct: 282 EIAEILNHPRVYSFLHIPVQSGSDAVLRDMNREYSSADFCRVVDFMLQNVPNVYIATDFI 341
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
C FP ET EDF +++ L+ Y+FP V I+QFYPR GTPAAR+KK+ + ++R+ ++S+
Sbjct: 342 CAFPTETIEDFEESMQLVHRYRFPSVFINQFYPRKGTPAARLKKITTTEARRRTAAMSSL 401
Query: 407 FEAFTPY----LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG-NMLGTSALVK 461
F ++T Y LGME V + E A D +H V H K Y L+P ++LG V+
Sbjct: 402 FRSYTRYGNDRLGMEYDV---LVCEWATDKVHFVAHNKCYEHFLLPCDDVSILGQVVRVR 458
Query: 462 ITSVGRWSVFGEVIK 476
+T VG++ + E+++
Sbjct: 459 VTGVGKFHMNAEMVR 473
>gi|294900097|ref|XP_002776898.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
gi|239884099|gb|EER08714.1| 2-methylthioadenine synthetase, putative [Perkinsus marinus ATCC
50983]
Length = 554
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/414 (49%), Positives = 283/414 (68%), Gaps = 12/414 (2%)
Query: 46 SKTGSLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT- 103
S GS +PG + I+ KTFGCSHN SDSEYM G LS +GY +AD+ ++N+
Sbjct: 110 SVVGSGDGNLPGAGQKIFFKTFGCSHNTSDSEYMMGLLSRYGYDFVGKIADADVVVLNSC 169
Query: 104 ------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE 157
+ A+ TL+ ++ P VV GCVPQ R + L S+VG QIDR+VEVVEE
Sbjct: 170 TVKNPSEDALATLVKAAEAEGLPTVVCGCVPQADRKSRALRNASLVGTSQIDRIVEVVEE 229
Query: 158 TLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
TL+G+ V LL KKLP L +LPK+RRN VEI+ +N GCLG C+YCKTK+ARG LGSY+
Sbjct: 230 TLRGNRVSLLQSKKLPELRELPKIRRNPLVEIVAVNTGCLGKCSYCKTKYARGSLGSYSK 289
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
E ++ RVRT +A+GV+++WL+SED GAYG DIG N+ LL IV EL +M+R+GMT
Sbjct: 290 EDIIARVRTALAEGVQQIWLTSEDLGAYGLDIGTNVAELLREIVGELEKYPDSMMRLGMT 349
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
NPP+IL+H +E+A++L HP V+ F+H+P+QSGS+ VL M REYT+ DF +V L V
Sbjct: 350 NPPYILQHAEEVAKILTHPQVFEFIHIPIQSGSNDVLRHMIREYTVEDFDRLVGILRARV 409
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
P + +ATD+ICGFP E++E+ +T+ LIK ++FP ++ISQFY RPGT AAR++ ++P V
Sbjct: 410 PNLTVATDVICGFPTESEENHRETLELIKRHRFPVINISQFYARPGTAAARIRPRLPGKV 469
Query: 396 VKKRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
+K+RS E+T++F ++ T L G V +W E+ VGHTK Y + ++
Sbjct: 470 IKERSTEVTNLFMSYSLTDSLYDIGEVVEVWYDEVDEGRGQTVGHTKRYTKAVL 523
>gi|323455423|gb|EGB11291.1| hypothetical protein AURANDRAFT_1140, partial [Aureococcus
anophagefferens]
Length = 446
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/444 (49%), Positives = 292/444 (65%), Gaps = 23/444 (5%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN---SEEADIWLINT-------Q 104
+P T+ +Y++TFGCSHN SDSEYM G L++ GY ++ + ++ AD W++N+ Q
Sbjct: 3 LPETKRVYVRTFGCSHNVSDSEYMCGLLASEGYEVSTDRADADAADAWVVNSCTVKDPSQ 62
Query: 105 SAMDTLIAKCKSAKKPLVVAGCVPQGSRDL---------KELEGVSIVGVQQIDRVVEVV 155
+A + + K +VV+GC+PQG R L EL+G S VG++QI RV E V
Sbjct: 63 AAFMKEVRRGMKDGKAVVVSGCIPQGERGLVKKQGGRKPPELDGASSVGIKQIGRVNEAV 122
Query: 156 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
L+G L LP+L+LPKVR N VEI+P++ GCLGAC YCKT+HARG LGSY
Sbjct: 123 AAALRGETFHALGSGPLPSLELPKVRANALVEIVPLSSGCLGACAYCKTRHARGALGSYA 182
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 275
+ +V RV +ADGV EVWLSSEDTGAYG D+G +L LL A++ L MLR+GM
Sbjct: 183 LADIVARVDGALADGVGEVWLSSEDTGAYGIDLGTSLGALLEALLPVLEAHPHGMLRVGM 242
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA--MNREYTLSDFRTVVDTLI 333
TNPP++L+ L+ + L H VY+FLHVPVQSGSDAVL+ MNREYT++DFR VVD L
Sbjct: 243 TNPPYVLDQLEVLGRCLNHAQVYAFLHVPVQSGSDAVLAKDRMNREYTVADFRAVVDGLA 302
Query: 334 ELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 392
V G+ + TD+ICGFPGETD+DF+ T L+++Y F ++ISQFY RPGTPAA MK+V
Sbjct: 303 ARVDGGLSLMTDVICGFPGETDDDFDATYALVEDYAFGLINISQFYARPGTPAASMKRVH 362
Query: 393 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTG 451
+A VK RSR L+++ + F PY G+ G V E+A G LV HTK Y +VLVP
Sbjct: 363 TATVKDRSRRLSALTQTFRPYDGLVGTVVACAAHAEVADGGARLVCHTKTYAKVLVPFDR 422
Query: 452 NMLGTSALVKITSVGRWSVFGEVI 475
+++G V+I + RW V G V+
Sbjct: 423 SLVGARFEVRIGAAHRWHVDGVVL 446
>gi|119575831|gb|EAW55427.1| CDK5 regulatory subunit associated protein 1-like 1, isoform CRA_c
[Homo sapiens]
Length = 488
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/403 (51%), Positives = 274/403 (67%), Gaps = 37/403 (9%)
Query: 87 YALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 139
+ +T+N+ +AD+WL+N+ + I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 140 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 192
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 193 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 252
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 253 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 312
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 313 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 372
L M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319
Query: 373 HISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG 432
I+QFYPRPGTPAA+M++VP+ V+ +R +++ +TE + D
Sbjct: 320 FINQFYPRPGTPAAKMEQVPAQVIGER---------------------QQVLVTEESFDS 358
Query: 433 IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
V H + Y QVLVP +G V I G+ + G+ +
Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401
>gi|34535972|dbj|BAC87494.1| unnamed protein product [Homo sapiens]
Length = 487
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/403 (51%), Positives = 274/403 (67%), Gaps = 37/403 (9%)
Query: 87 YALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG 139
+ +T+N+ +AD+WL+N+ + I K + K +V+AGCVPQ L+G
Sbjct: 22 HQVTENASDADLWLLNSCTVKNPAEDHFRNSIKKAQEENKKIVLAGCVPQAQPRQDYLKG 81
Query: 140 VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL-------PALDLPKVRRNKFVEILPIN 192
+SI+GVQQIDRVVEVVEET+KGH VRLL +KK LDLPK+R+N +EI+ IN
Sbjct: 82 LSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIEIISIN 141
Query: 193 VGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNL 252
GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGRDIG NL
Sbjct: 142 TGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGRDIGTNL 201
Query: 253 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 312
P LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+V
Sbjct: 202 PTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSV 259
Query: 313 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQV 372
L M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++EYKFP +
Sbjct: 260 LMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSL 319
Query: 373 HISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADG 432
I+QFYPRPGTPAA+M++VP+ V+ +R +++ +TE + D
Sbjct: 320 FINQFYPRPGTPAAKMEQVPAQVIGER---------------------QQVLVTEESFDS 358
Query: 433 IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
V H + Y QVLVP +G V I G+ + G+ +
Sbjct: 359 KFYVAHNQFYEQVLVPKNPAFMGKMVEVDIYESGKHFMKGQPV 401
>gi|170579583|ref|XP_001894893.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
gi|158598345|gb|EDP36257.1| MiaB-like tRNA modifying enzyme, archaeal-type family protein
[Brugia malayi]
Length = 447
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/400 (50%), Positives = 285/400 (71%), Gaps = 11/400 (2%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQG 130
MAG LSA G+ LT+ E+A +W++N+ ++ ++ ++ + + K ++VAGCV Q
Sbjct: 1 MAGLLSAAGHQLTNKKEDASLWILNSCTVKTPSETQLENMVREARKLNKFIIVAGCVSQA 60
Query: 131 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEIL 189
+L+ L+G+SIVGV+QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKFVEIL
Sbjct: 61 EPNLRFLDGISIVGVKQIECVTQAVEETLKGNCVRFLSRRKQNSNLLLPKIRKNKFVEIL 120
Query: 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 249
I+ GCL CTYCKTK ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI
Sbjct: 121 AISSGCLNHCTYCKTKSARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDID 180
Query: 250 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 309
+ LP LLNA+V E+ P+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS S
Sbjct: 181 MVLPDLLNALV-EIIPEG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSAS 238
Query: 310 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369
DAVLS M REYT +DF VVD +I+ VP + IATD IC +P ET+ DF +++ L+++Y+F
Sbjct: 239 DAVLSDMKREYTCTDFCRVVDYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRF 298
Query: 370 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEI 428
P + I+QFYPR GTPAA +KK+ + ++R+ E++S+F +++ Y G R+ + E+
Sbjct: 299 PSLFINQFYPRIGTPAANLKKIDTIEARRRTAEMSSLFRSYSRYNKERIGEKHRVLVCEL 358
Query: 429 AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
A D H VGH K Y L+PS +LG V+IT V ++
Sbjct: 359 ATDQQHYVGHNKHYEHFLIPSKKCLLGKWVQVRITDVSKF 398
>gi|358334470|dbj|GAA52927.1| CDKAL1-like protein [Clonorchis sinensis]
Length = 659
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 237/557 (42%), Positives = 317/557 (56%), Gaps = 114/557 (20%)
Query: 29 VNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY- 87
V ++ + L D +++ IP ++++T+GC+HN SDSEYMAG L+ +GY
Sbjct: 22 VKVRFRTRRQNLADTDSDSVTTMA--IPEHYRVFVQTWGCAHNTSDSEYMAGLLAQYGYQ 79
Query: 88 ---------------ALTDNSE-----------------------------------EAD 97
A ++NSE EAD
Sbjct: 80 VILGGSTKDSHEPVSAQSNNSECECSSGLAGDCCQKQEDKGCCTMPGLLTADERAKQEAD 139
Query: 98 IWLINTQS----AMDTLIAKCKSAK---KPLVVAGCVPQGSRDLKELEGVSIVGVQQIDR 150
+W++N+ + A D K+ K LVVAGCVPQ L+GVSI+GVQQIDR
Sbjct: 140 LWVLNSCTVKGPAEDHFRNAVKAGMRMGKRLVVAGCVPQSHPAADYLKGVSIIGVQQIDR 199
Query: 151 VVEVVEETLKGHEVRLL--------------HRKKL--PALDLPKVRRNKFVEILPINVG 194
VVEVVEETL+G+ VR L R++L LDLPK+RRN +EIL ++ G
Sbjct: 200 VVEVVEETLQGNTVRFLDKKWAVSGDGDSHSERRRLGGARLDLPKIRRNPLIEILAVSTG 259
Query: 195 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG----- 249
CL ACTYCKTKHARG L SY +E L+ R + ADGVKE+WL+SED GAYGRD+
Sbjct: 260 CLNACTYCKTKHARGVLASYPIEELLERAKQAFADGVKELWLTSEDLGAYGRDLDRTTSV 319
Query: 250 -------------VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPC 296
+ L LL+ +V L P+G MLR+GMTNPP+ILE L+EIA+VL HP
Sbjct: 320 YSCPSMAARFPQCLTLADLLSGLV-RLIPEGC-MLRLGMTNPPYILEQLREIADVLSHPR 377
Query: 297 VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV--------------DTLIELVPG---M 339
VY+FLHVPVQSGSDAVL M REYT+ +F VV D + V G +
Sbjct: 378 VYAFLHVPVQSGSDAVLDCMKREYTVDEFSHVVTYLQDHIPPPPLPPDATDDAVNGSGTL 437
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 398
+ATDIICGFP ET+ DF +TV L++ ++FP ++I+QF+ RPGTPAA M +K +A VKK
Sbjct: 438 TVATDIICGFPNETEADFAETVKLVERFRFPVLYINQFFARPGTPAASMIRKATTAEVKK 497
Query: 399 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
R+R L +F A+ PY G +G + R+ +TE + DG VGHTK Y QVLVP + G
Sbjct: 498 RTRRLHDLFRAYKPYEGRQGSLVRVLVTETSHDGRFWVGHTKAYEQVLVPKIPEVYGRII 557
Query: 459 LVKITSVGRWSVFGEVI 475
LV+IT ++ + +++
Sbjct: 558 LVRITECDKFFMRSDIV 574
>gi|323509405|dbj|BAJ77595.1| cgd6_1520 [Cryptosporidium parvum]
Length = 493
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/378 (51%), Positives = 264/378 (69%), Gaps = 23/378 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
+PG I +K FGC+HN+SDSE M G LS +GY L + +E ++ +IN+ Q +
Sbjct: 98 VPGVAKIMVKNFGCNHNRSDSESMMGLLSEYGYTLVEELDECNLIVINSCTVKGPSQDSC 157
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
LI KS +K +VV GCVPQ +L L+ VSI+GV+ I R+VEVVE TL+G+ V L+
Sbjct: 158 QNLIELAKSKRKFVVVTGCVPQADINLNFLKDVSIIGVRNIHRIVEVVELTLQGNIVLLI 217
Query: 168 HRK--------------KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
K LP L LPK+RRN FVEI+ I+VGCLG CTYCKTKH+RG LGS
Sbjct: 218 PDKMEGKSGQLIDSLEISLPPLSLPKIRRNPFVEIITISVGCLGNCTYCKTKHSRGDLGS 277
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 273
Y VE+++ R+ + +GVK+ WL+SED GAYG+DIG NL LL I+ LP D M+RI
Sbjct: 278 YPVETIIQRINQSLNEGVKQFWLTSEDIGAYGKDIGTNLSELLREILKILPQD--IMIRI 335
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
GMTNPP+IL+ + EI ++++HP V+ FLH+PVQSGS+ +L M R+Y + +F +VD+++
Sbjct: 336 GMTNPPYILDQIDEIIDIMKHPNVFEFLHIPVQSGSNRILDLMKRDYVIEEFSLLVDSIL 395
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393
+ +P IATDIICGFPGE+D+D Q+V LI +YKFP ++IS+FYPRPGTPAA+MK VP+
Sbjct: 396 KEIPLATIATDIICGFPGESDQDHFQSVELINKYKFPVINISKFYPRPGTPAAKMKPVPN 455
Query: 394 AVVKKRSRELTSVFEAFT 411
V K RS E+T+ F++F
Sbjct: 456 GVSKSRSSEITNTFQSFN 473
>gi|403223832|dbj|BAM41962.1| uncharacterized protein TOT_040000341 [Theileria orientalis strain
Shintoku]
Length = 873
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/446 (45%), Positives = 290/446 (65%), Gaps = 15/446 (3%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
L DN + + S P IY K FGCSHN SD EYM G L +GY + D E++ +
Sbjct: 433 LSDNSMDQLYDAS--TPELTKIYFKNFGCSHNISDGEYMLGLLVEYGYKIVDTMEKSHLV 490
Query: 100 LINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDR 150
+IN+ + AM T+I + P+VV+GCVPQ ++ +S++G+ QIDR
Sbjct: 491 IINSCTVKGPSEEAMVTMIKSAVMSYLPVVVSGCVPQADQNNPVFNNPLISLLGITQIDR 550
Query: 151 VVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 210
+VEVVE +L+G+++ LL +K LP LDLPK+RRNK +EI+P++ GCLG+CT+CKTKH+RG
Sbjct: 551 IVEVVENSLQGNKMVLLEKKDLPRLDLPKIRRNKLIEIIPLSTGCLGSCTFCKTKHSRGV 610
Query: 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTM 270
LGSY +E ++ RV + + +GVKE+WL+SED GAYG DIG NL LL +IV LP TM
Sbjct: 611 LGSYDIEIILDRVESCVNEGVKEIWLTSEDLGAYGIDIGTNLVTLLRSIVQVLP--QGTM 668
Query: 271 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
LR+GM+NPPFI +++ EI E+L H VY F+H+PVQS S++VL MNREY + +F +V
Sbjct: 669 LRLGMSNPPFIKKYIDEICEILLHDNVYEFIHIPVQSFSNSVLKKMNREYKVEEFLHLVK 728
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 390
T+ VP IATD+I GFP E E T N+++E K P V+ISQ+Y R GT A +MK+
Sbjct: 729 TIRTKVPNCMIATDVISGFPTEKPEHHMATRNMLEELKLPVVNISQYYARKGTIACKMKQ 788
Query: 391 VPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV-LVPS 449
+PS V K R+R++T+VF ++ +G+V +++ +I L+GH K YV+V LV
Sbjct: 789 IPSKVRKGRTRDITNVFMSYETNSKYKGQVIKVYFNQINC-HYQLIGHDKHYVKVMLVHL 847
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
T GT VK+ +W + G ++
Sbjct: 848 TDKYFGTVQYVKVVKTTKWHLEGIIV 873
>gi|345312696|ref|XP_001514441.2| PREDICTED: CDK5 regulatory subunit-associated protein 1-like 1,
partial [Ornithorhynchus anatinus]
Length = 448
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/370 (54%), Positives = 267/370 (72%), Gaps = 9/370 (2%)
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K + K +V+AGCVPQ ++G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAQEEDKKVVLAGCVPQAQPRQDYMKGLSIIGVQQIDRVVEVVEETVKGHSVRLLGQKKD 60
Query: 173 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 61 NGKRMGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQ 120
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHL 178
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+ +A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDI
Sbjct: 179 EAMAKILSHPRVYAFLHIPVQSASDSVLMGMKREYCVADFKRVVDFLKEKVPGITIATDI 238
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFPGETDEDF TV L+++Y+FP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 239 ICGFPGETDEDFQDTVKLVEDYRFPSLFINQFYPRPGTPAAKMQQVPAQVKKQRTKELSQ 298
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+F ++ PY G +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 299 LFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPQFMGKMVEVDIYES 358
Query: 466 GRWSVFGEVI 475
G+ + G+ +
Sbjct: 359 GKHFLKGQPV 368
>gi|237833257|ref|XP_002365926.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|211963590|gb|EEA98785.1| radical SAM domain-containing protein [Toxoplasma gondii ME49]
gi|221508888|gb|EEE34457.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
VEG]
Length = 867
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/344 (55%), Positives = 251/344 (72%), Gaps = 5/344 (1%)
Query: 130 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 189
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 249
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 250 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 306
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 307 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 367 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 426
+KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y M + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807
Query: 427 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 470
+ H VG TK YV+VL P +LGT L+++T+V +W V
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHV 851
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 56 PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
PG + I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINS 323
>gi|221488386|gb|EEE26600.1| Radical SAM domain-containing protein, putative [Toxoplasma gondii
GT1]
Length = 867
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/344 (55%), Positives = 251/344 (72%), Gaps = 5/344 (1%)
Query: 130 GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEIL 189
G RDL +L SIVGV IDR+VE VEE LKG+ +RL +++LP+LDLPK+RRN VEI+
Sbjct: 510 GQRDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKRRLPSLDLPKIRRNNLVEIV 567
Query: 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 249
PI+ GCLG+CTYCKTKHARG LGSY E++ RV + +GVK++WL+SED+GAYG D
Sbjct: 568 PISTGCLGSCTYCKTKHARGDLGSYPEEAIEKRVEASLEEGVKQIWLTSEDSGAYGLDRQ 627
Query: 250 VNLPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 306
+L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+Q
Sbjct: 628 SSLTGLLARLLRNVFDRKADSSLMLRVGMSNPPFLLQQLKSAVQVFSHPNVFEFLHLPLQ 687
Query: 307 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366
SGS+ VL AMNREYT F VV+TL++ P M IATDIICGFPGETDED +T+ +I++
Sbjct: 688 SGSNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETDEDHERTLAIIRK 747
Query: 367 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 426
+KFP V+ISQFYPRPGTPAA MK++PS VVK+RSRE+T++FE++T Y M + +W +
Sbjct: 748 FKFPVVNISQFYPRPGTPAASMKQLPSQVVKRRSREVTALFESYTCYDWMLHTTQMVWFS 807
Query: 427 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 470
+ H VG TK YV+VL P +LGT L+++T+V +W V
Sbjct: 808 STSEKSDHTVGQTKQYVKVLTPRDDALLGTCCLMRVTAVEKWHV 851
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 56 PGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
PG + I++KTFGC+HNQSDSEYM G L A GY E+AD+ LIN+
Sbjct: 275 PGKRQRIFVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEDADVCLINS 323
>gi|326917127|ref|XP_003204853.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Meleagris gallopavo]
Length = 327
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/308 (61%), Positives = 239/308 (77%), Gaps = 9/308 (2%)
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K A K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 1 KAHEANKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKD 60
Query: 173 -------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG L SY +E LV R +
Sbjct: 61 NGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRAKQ 120
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+GV E+WL+SEDTGAYGRDIG +LP LL +V E P+G+ MLR+GMTNPP+ILEHL
Sbjct: 121 SFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EAIPEGA-MLRLGMTNPPYILEHL 178
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DFR VVD L E VPG+ IATDI
Sbjct: 179 EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFRRVVDFLKEKVPGITIATDI 238
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFPGETDEDF +T+ L+++YKFP + I+QFYPRPGTPAA+M +VP+AV K+R+++L+
Sbjct: 239 ICGFPGETDEDFQETMKLVEQYKFPSLFINQFYPRPGTPAAKMHQVPAAVKKQRTKDLSQ 298
Query: 406 VFEAFTPY 413
+F ++ PY
Sbjct: 299 LFHSYNPY 306
>gi|71029160|ref|XP_764223.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351177|gb|EAN31940.1| hypothetical protein, conserved [Theileria parva]
Length = 750
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/432 (44%), Positives = 285/432 (65%), Gaps = 16/432 (3%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMD 108
PG +Y+K FGCSHN SDSEYM G +S GYA+TD + D+ +IN+ + M
Sbjct: 323 PGEVVVYLKNFGCSHNISDSEYMLGIISESGYAITDTMDSCDLVIINSCTVKNPSEHGMI 382
Query: 109 TLIAKCKSAKKPLVVAGCVPQGSR--DLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
I + K ++V GC+PQ + + +S++G+ QI+++V V+E L G+ V +
Sbjct: 383 NYINQGLKLGKKIIVTGCIPQSDKLHPIFNNNNISLLGIMQIEKIVYVIENMLNGNRVVM 442
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L +KKLP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY +ES++ RV +
Sbjct: 443 LEKKKLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYEIESILDRVESC 502
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
I++GVKE+WL+SED GAYG D+G N+ LL++I+A LP D MLR+GM NPP+I +++
Sbjct: 503 ISEGVKEIWLTSEDLGAYGIDLGTNIITLLHSIIAVLPKD--IMLRLGMCNPPYIKKYIS 560
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+ E+LRH V+ F+H+PVQS SD+VL MNREY L DF +V + E VP IATDII
Sbjct: 561 EVCEILRHENVFEFIHIPVQSCSDSVLEKMNREYKLEDFLHIVSVIKEKVPNCTIATDII 620
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
CGFP ET ED TV+ +++ K ++ISQ+Y R GT ++ MK++ + V K RSRE+T+V
Sbjct: 621 CGFPTETHEDHQATVDTLRDLKLSVINISQYYSRKGTVSSGMKELDNNVKKNRSREVTNV 680
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN---MLGTSALVKIT 463
F ++ + + I D LVG+ K Y++++V + + LGT+ VK+
Sbjct: 681 FMSYENNSKFLNEQFKAYFNHINGD--QLVGYNKYYIKLIVKNLKDPESYLGTTQHVKVI 738
Query: 464 SVGRWSVFGEVI 475
+ +W + E++
Sbjct: 739 NTHKWHLECEIL 750
>gi|340054214|emb|CCC48509.1| putative tRNA modification enzyme, fragment [Trypanosoma vivax
Y486]
Length = 514
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/459 (43%), Positives = 293/459 (63%), Gaps = 24/459 (5%)
Query: 40 LHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIW 99
+HD + + + + + + T + EYMAG L GY++TD E AD +
Sbjct: 10 MHDGDIEDILCNNATLNVSSSRIVNTLNTRQRRRLPEYMAGLLVQSGYSVTDEFEHADAY 69
Query: 100 LINTQSAMD-------TLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 152
L+N+ + + +++ + + KPLVVAGCVPQ K+ VSI+GV+ IDRV
Sbjct: 70 LLNSCTVKNPSEEHFVSMMNRVRLTGKPLVVAGCVPQADPLNKQWSDVSIIGVRSIDRVC 129
Query: 153 EVVEETLKGHEVRLL----HRKK------------LPALDLPKVRRNKFVEILPINVGCL 196
VV E L+G+ VRL+ H++ LPALDLPKVR N+++EI+PI+VGCL
Sbjct: 130 YVVHEALQGNCVRLIGLSGHQEASDSGGRSRETDTLPALDLPKVRHNRYIEIIPISVGCL 189
Query: 197 GACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILL 256
CTYCKTK ARG L SY +E +V RVR V+ +GVKE+ L+SED+GAYG DIG ++ LL
Sbjct: 190 NNCTYCKTKQARGDLRSYPIEKIVERVREVLREGVKEIRLTSEDSGAYGIDIGTDVVQLL 249
Query: 257 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM 316
A+ AEL MLR+GM+NPP++L H+ ++A +L+HP +Y F+H+PVQSGS+ +L+AM
Sbjct: 250 RAVAAELS-GKDVMLRVGMSNPPYLLRHVNDLAVLLKHPNIYEFVHIPVQSGSNRILNAM 308
Query: 317 NREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 376
REYT+ +F V+ + VP + ++TDIIC FPGE + ++ +T++L + F ++I++
Sbjct: 309 LREYTVEEFCLCVEAIRSAVPRVTLSTDIICAFPGEGESEWRETMDLCRRINFEIINITR 368
Query: 377 FYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV 436
FYPR TPAA MK++P+ + K R+ ELT+ F ++ Y M G V RI + E A D HLV
Sbjct: 369 FYPRRNTPAAAMKQIPTNIAKSRTTELTNFFNSYRTYDSMVGEVHRITLLETAHDKHHLV 428
Query: 437 GHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
GHTK YVQVLV ++G + V I+S ++SV G V+
Sbjct: 429 GHTKNYVQVLVDPASALMGETVTVVISSASKYSVVGRVL 467
>gi|401408469|ref|XP_003883683.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
gi|325118100|emb|CBZ53651.1| putative radical SAM domain-containing protein [Neospora caninum
Liverpool]
Length = 863
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/342 (55%), Positives = 248/342 (72%), Gaps = 5/342 (1%)
Query: 132 RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPI 191
RDL +L SIVGV IDR+VE VEE LKG+ +RL +K+LP+LDLPK+RRN VEI+PI
Sbjct: 508 RDLLKL--CSIVGVSAIDRIVEAVEEALKGNVIRLGGKKRLPSLDLPKIRRNALVEIVPI 565
Query: 192 NVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN 251
+ GCLG+CTYCKTKHARG LGSY E++ R+ + DGVK++WL+SED+GAYG D +
Sbjct: 566 STGCLGSCTYCKTKHARGELGSYPEEAIETRIEASLLDGVKQIWLTSEDSGAYGLDRQSS 625
Query: 252 LPILLNAI---VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 308
L LL + V + D S MLR+GM+NPPF+L+ LK +V HP V+ FLH+P+QSG
Sbjct: 626 LTSLLARLLRNVFDRRADPSLMLRVGMSNPPFLLQQLKSAVQVFAHPNVFEFLHLPLQSG 685
Query: 309 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368
S+ VL AMNREYT F VV+TL++ P M IATDIICGFPGET+ED +T+ +IK++K
Sbjct: 686 SNDVLLAMNREYTAEQFEVVVETLLKHFPRMTIATDIICGFPGETEEDHEKTLAIIKKFK 745
Query: 369 FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEI 428
FP V+ISQFYPRPGTPAA MK++PS +VK+RSRE+T++FE++T Y M + +W T
Sbjct: 746 FPVVNISQFYPRPGTPAASMKQLPSQIVKRRSREVTALFESYTCYDWMLHTTQMVWFTGT 805
Query: 429 AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSV 470
+ H VG TK YV+VL P +LGT + IT+V +W V
Sbjct: 806 SEKSHHTVGQTKQYVKVLTPRDDALLGTGCPMYITAVDKWHV 847
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 56 PGTET-IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
PG + IY+KTFGC+HNQSDSEYM G L A GY EEAD+ LIN+
Sbjct: 268 PGKQQKIYVKTFGCAHNQSDSEYMMGLLDAAGYTFVSRMEEADVCLINS 316
>gi|68068881|ref|XP_676351.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56496008|emb|CAH98348.1| conserved hypothetical protein [Plasmodium berghei]
Length = 784
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/363 (49%), Positives = 256/363 (70%), Gaps = 8/363 (2%)
Query: 120 PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLP 178
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+LP
Sbjct: 423 KIIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLP 482
Query: 179 KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLS 237
K+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+WL+
Sbjct: 483 KIRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVSRIKYVCTKDNIKEIWLT 542
Query: 238 SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 297
SED+GAYG D+ N+ LL I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +
Sbjct: 543 SEDSGAYGIDLNTNIVNLLKEIL-DYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNM 601
Query: 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 357
Y F+H+PVQSGS+ VL MNREY + DF +VD L + VP M IATDIICGFP E++ D
Sbjct: 602 YEFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDH 661
Query: 358 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGM 416
+TVNLIK+YKFP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++ Y +
Sbjct: 662 LETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYKFL 721
Query: 417 EGRVERIWITEIAADGIHLVGHTKGYVQVLV----PSTGNMLGTSALVKITSVGRWSVFG 472
+ ++++ TEI++ H++GHTK YV+VL+ N+LG A KI S +W V
Sbjct: 722 QNTIQKVLFTEISSKSEHIIGHTKQYVKVLLHNNNSENENLLGKFATCKIVSTHKWHVIA 781
Query: 473 EVI 475
E++
Sbjct: 782 ELV 784
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAM 107
IP IY K+FGC+HN SDSE+M G LS +G+ N ++ DI ++N ++ +M
Sbjct: 216 IPENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFQFVKNIDDCDICIVNSCTVKNPSEESM 275
Query: 108 DTLI 111
T+I
Sbjct: 276 KTII 279
>gi|256081446|ref|XP_002576981.1| radical sam proteins [Schistosoma mansoni]
gi|350644302|emb|CCD60954.1| radical sam proteins, putative [Schistosoma mansoni]
Length = 810
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/548 (40%), Positives = 303/548 (55%), Gaps = 104/548 (18%)
Query: 25 NAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSA 84
+ V V ++ KP ++S+ LS +P ++++T+GC+HN SDSEYM G L
Sbjct: 17 STVLVKTRFRNKKP-----NISEDLCLSSNLPEKFHVFVQTWGCAHNTSDSEYMTGLLVK 71
Query: 85 FGYALT--------------------------------------------------DNSE 94
+GY +T D +
Sbjct: 72 YGYRVTLDGSQITNGCESEANISSTSDFACGCQDNGDQCCSKEKNSDKGNVVLSNCDAKK 131
Query: 95 EADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQ 147
AD+W++N+ + + + K +V +GCVPQ L+GVS++GV Q
Sbjct: 132 NADVWVLNSCTVKGPAEDHFRNAVLEGIKLGKRVVASGCVPQSRPGADYLKGVSVIGVHQ 191
Query: 148 IDRVVEVVEETLKGHEVRLLHRKKLP----ALDLPKVRRNKFVEILPINVGCLGACTYCK 203
IDR+VEVVEETL+ H ALDLPK+RRN +EIL I+ GCL ACTYCK
Sbjct: 192 IDRIVEVVEETLQESSSSATHSSSSSLAGIALDLPKIRRNPLIEILAISTGCLNACTYCK 251
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------------- 249
TK ARG L SY +E L+ R + +GVKE+WL+SED GAYGRD+
Sbjct: 252 TKQARGILASYPIEQLLDRAKQAFKEGVKELWLTSEDLGAYGRDLDRTTSSLICPGLSEK 311
Query: 250 ----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 305
+ L LL +V +P MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PV
Sbjct: 312 WSHHITLADLLAGLVPIIP--AGCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPV 369
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIE------LVPG-----------MQIATDIICG 348
QSGSDAVL AM REYT+ +F +VVD L++ L PG + IATD+ICG
Sbjct: 370 QSGSDAVLDAMKREYTMEEFSSVVDYLMQNVKPPNLPPGAAHDTVNGSGTLTIATDVICG 429
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVF 407
FP ET+ DFN+TV LI++Y+FP +HI+QF+PRPGTPAA M +K S+ VK R+R L +F
Sbjct: 430 FPTETNNDFNETVELIEKYQFPVLHINQFFPRPGTPAANMSRKANSSEVKSRTRRLHDLF 489
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
++ Y G G R+ ITE + DG VGHTK Y Q+L+P ++ G LV+I +
Sbjct: 490 RSYRTYDGRVGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKDPDVYGRIVLVRIIECDK 549
Query: 468 WSVFGEVI 475
+ + G +I
Sbjct: 550 FFMRGIII 557
>gi|82915234|ref|XP_729019.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485813|gb|EAA20584.1| Drosophila melanogaster GH28477p-related [Plasmodium yoelii yoelii]
Length = 817
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/362 (50%), Positives = 253/362 (69%), Gaps = 8/362 (2%)
Query: 121 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLPK 179
++V GCVPQ D+K E VS+VGV ID++V+ VE + G+ V+ L + KK+ +L+LPK
Sbjct: 457 IIVCGCVPQAENDMKIFENVSLVGVNNIDKIVDAVENVINGYNVKYLKQSKKMTSLNLPK 516
Query: 180 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSS 238
+R+NKF+EI+ IN GCLG CTYCKTK ARG+L SY ++ +V R++ V D +KE+WL+S
Sbjct: 517 IRKNKFIEIININNGCLGNCTYCKTKFARGNLSSYNIKDIVNRIKHVYTKDNIKEIWLTS 576
Query: 239 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 298
ED+GAYG D+ N+ LL I+ E D M+RIGMTNPP+IL+H+K+I ++L+H +Y
Sbjct: 577 EDSGAYGIDLNTNIVNLLKEIL-EYVQDTDVMIRIGMTNPPYILKHVKDICKLLKHKNMY 635
Query: 299 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 358
F+H+PVQSGS+ VL MNREY + DF +VD L + VP M IATDIICGFP E++ D
Sbjct: 636 EFIHIPVQSGSNNVLKDMNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHL 695
Query: 359 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGME 417
+TVNLIK+YKFP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++ Y ++
Sbjct: 696 ETVNLIKKYKFPILNISQFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYKFLQ 755
Query: 418 GRVERIWITEIAADGIHLVGHTKGYVQV----LVPSTGNMLGTSALVKITSVGRWSVFGE 473
++ + TEI++ H++GHTK YV+V N+LG A KI S +W V E
Sbjct: 756 DTIQNVLFTEISSKSEHIIGHTKQYVKVLLHNNNNENENLLGKFATCKIVSTHKWHVIAE 815
Query: 474 VI 475
++
Sbjct: 816 LV 817
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAMD 108
P IY K+FGC+HN SDSE+M G LS +G+ N E+ DI ++N ++ +M
Sbjct: 248 PENYNIYFKSFGCAHNSSDSEFMMGLLSNYGFKFVKNIEDCDICIVNSCTVKNPSEESMK 307
Query: 109 TLI 111
T+I
Sbjct: 308 TII 310
>gi|84997025|ref|XP_953234.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304230|emb|CAI76609.1| hypothetical protein, conserved [Theileria annulata]
Length = 750
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/436 (43%), Positives = 276/436 (63%), Gaps = 29/436 (6%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMD 108
P IY+K FGCSHN SDSEYM G +S GY +T+N EE D+ +IN+ + AM
Sbjct: 312 PSEVKIYLKNFGCSHNISDSEYMLGLISESGYTITENIEECDVVIINSCTVKNPSEHAMV 371
Query: 109 TLIAKCKSAKKPLVVAGCVPQGSRD-------------LKELEGVSIVGVQQIDRVVEVV 155
I + K ++V GC+PQ + L +L VG+ QID+++ V+
Sbjct: 372 NYINQGLKLNKRIIVTGCIPQSDKKHPVLSTSVTNVQFLNKLNNS--VGIMQIDKIIYVI 429
Query: 156 EETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
E + G+ V LL +K LP+LDLPK+R+NK +EI+PI+ GCLG+CT+CKTKH+RG L SY
Sbjct: 430 ENVMNGNRVVLLEKKSLPSLDLPKIRKNKLIEIIPISTGCLGSCTFCKTKHSRGVLNSYE 489
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 275
+E+++ RV + +++GVKE+WL+SED GAYG D+G N+ LL +I+ LP + MLR+GM
Sbjct: 490 IEAILDRVESSVSEGVKEIWLTSEDLGAYGIDLGTNIITLLYSIINILPQN--IMLRLGM 547
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
NPP+I +++ EI E+L H V+ F+H+PVQS SDAVL MNREY L DF +V +
Sbjct: 548 CNPPYIKKYINEICEILSHDNVFEFIHIPVQSCSDAVLEKMNREYLLEDFLYIVSVIKAK 607
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P IATDIICGFP ET++D TV +++ K ++ISQ+Y R GT ++ MK++ + V
Sbjct: 608 LPNCTIATDIICGFPTETEQDHQITVQTLQQLKLSIINISQYYSRKGTISSSMKELDNNV 667
Query: 396 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN--- 452
K RSRE+T+VF ++ V +++ + D LVG+ K Y++V+V N
Sbjct: 668 KKNRSREITNVFMSYENNSKFINSVFKVFFNHMNGD--QLVGYNKYYIKVIVKGLENPNT 725
Query: 453 MLGTSALVKITSVGRW 468
LGT VK+ + +W
Sbjct: 726 FLGTVQNVKVVNTHKW 741
>gi|302809011|ref|XP_002986199.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
gi|300146058|gb|EFJ12730.1| hypothetical protein SELMODRAFT_446559 [Selaginella moellendorffii]
Length = 686
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 239/354 (67%), Gaps = 37/354 (10%)
Query: 88 ALTDNSEEADIWLINTQS----AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIV 143
A++D+ + AD+WLINT + M TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPTMGTLIRKGKAASIPLVDSWMRSSGFKRSR-------- 53
Query: 144 GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
Q+ V ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCK
Sbjct: 54 SCQRHRSAVNTAGETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCK 113
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263
TKHARGHLGSYTV++ V R++TV+++G RDIG N+P LL A+VA L
Sbjct: 114 TKHARGHLGSYTVDTPVQRLKTVVSEG---------------RDIGANIPALLRALVAVL 158
Query: 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 323
P N P + HL HPCVYSFLHV VQSG D+VL M REYT S
Sbjct: 159 P-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFS 209
Query: 324 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383
+FR +VDTL LVP + IATDIICGFPGET EDF++ + LI+E FPQVHISQFYPRPGT
Sbjct: 210 EFRKIVDTLTRLVPEIHIATDIICGFPGETSEDFDRIMELIRECTFPQVHISQFYPRPGT 269
Query: 384 PAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVG 437
PAA MK+VP+ VKKRSR LTS+FE+FTPY GME + R+W+T AADGIHLVG
Sbjct: 270 PAALMKRVPTLEVKKRSRSLTSLFESFTPYAGME-KTYRVWVTNTAADGIHLVG 322
>gi|313217015|emb|CBY38208.1| unnamed protein product [Oikopleura dioica]
Length = 1477
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 245/354 (69%), Gaps = 12/354 (3%)
Query: 154 VVEETLKGHEVRLLHRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKH 206
VVEETLKG+ V+LL KK L LPKVRRN +EI+ IN GCL +CTYCKTKH
Sbjct: 15 VVEETLKGNTVKLLGPKKRAGKRIGGADLGLPKVRRNALIEIISINTGCLNSCTYCKTKH 74
Query: 207 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 266
ARG L SY ++ +V R G+ EVWL+SEDTGAYGRDIG N+ LLNA+V +P
Sbjct: 75 ARGDLASYPIDEIVARFEQAFEQGIVEVWLTSEDTGAYGRDIGTNIVELLNAVVKTIPE- 133
Query: 267 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 326
M+RIGMTNPP+ILEHL+ IA++L HP VYSFLHVPVQSGSDAVL++M REY DF
Sbjct: 134 -GCMMRIGMTNPPYILEHLEGIAKILNHPRVYSFLHVPVQSGSDAVLNSMRREYNREDFC 192
Query: 327 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 386
VVDTL VP IATDII GFP ET+EDF++T++L ++YKFP + ++QF+PRPGTPAA
Sbjct: 193 KVVDTLRANVPDCNIATDIIAGFPTETEEDFDETISLCEKYKFPSLFMNQFFPRPGTPAA 252
Query: 387 RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
+ +++P V+K+R+++L++VF+++ P+ G EG + ITE+A D + LVGHTK Y Q+L
Sbjct: 253 KWEQIPRQVIKERTKKLSNVFKSYLPFEGREGERHSVLITEMAHDKVSLVGHTKSYHQIL 312
Query: 447 VPST-GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDK 499
V ++G V + + S+ G ++ + V IA N +I + ++ K
Sbjct: 313 VKGNPDELMGKRVDVVVYQTTKHSMLGRIVSVAKSV--AIAENLQIMKEKQEAK 364
>gi|67462443|ref|XP_647883.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
gi|56463504|gb|EAL42497.1| RNA modification enzymes, MiaB-family [Entamoeba histolytica
HM-1:IMSS]
Length = 438
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/433 (46%), Positives = 269/433 (62%), Gaps = 17/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINT-------QSAMD 108
TI T+GCSHN SDSE M L GY + T S + +IN+ Q A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 109 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSV 465
+++ PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKIIEA 425
Query: 466 GRWSVFGEVIKIL 478
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|449705503|gb|EMD45533.1| RNA modification enzymes MiaBfamily protein [Entamoeba histolytica
KU27]
Length = 438
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/433 (45%), Positives = 269/433 (62%), Gaps = 17/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINT-------QSAMD 108
TI T+GCSHN SDSE M L GY + T S + +IN+ Q A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 109 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
R L +D VR N ++I+ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDIIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFNE 245
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I +L PC + FLH+P+QSGS ++L AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSILDAMKRKYTREEFDDVCNRLRIAVPGISIATDIIC 305
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSV 465
+++ PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKIIEA 425
Query: 466 GRWSVFGEVIKIL 478
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|167379627|ref|XP_001735214.1| radical sam proteins [Entamoeba dispar SAW760]
gi|165902883|gb|EDR28592.1| radical sam proteins, putative [Entamoeba dispar SAW760]
Length = 438
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/433 (45%), Positives = 271/433 (62%), Gaps = 17/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINT-------QSAMD 108
TI T+GCSHN SDSE M L GY + T S + +IN+ Q A++
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSETPISSKYKAVVINSCTVKNPSQQAIE 68
Query: 109 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ KC+ A PLV+AGCVPQ + + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACQCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+ I
Sbjct: 129 ERGALVNID-EHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEDLVKRVQHSI 187
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+GVKE+ L+ ED GAYG DI P +L I + +G MLRIGM NPP+I+++ KE
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINETFPHMLECICEVV--EGKAMLRIGMVNPPYIIKYFKE 245
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSSSVLEAMKRKYTREEFDDVCNRLRISVPGISIATDIIC 305
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFP ETDED +T+ I++++FP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIQKHQFPIVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTEIF 365
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSV 465
+++ PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLIGKEYIVWINEMAHDGINYAGHNISFVQVIVPYYEKENLLGKSVRVKIIEA 425
Query: 466 GRWSVFGEVIKIL 478
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|407043368|gb|EKE41912.1| MiaB family tRNA modifying enzyme, archaeal-type protein [Entamoeba
nuttalli P19]
Length = 438
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/433 (45%), Positives = 269/433 (62%), Gaps = 17/433 (3%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYAL----TDNSEEADIWLINT-------QSAMD 108
TI T+GCSHN SDSE M L GY + T S + +IN+ Q A+D
Sbjct: 9 TIKFLTYGCSHNVSDSEVMQKDLINAGYKIDSSSTPISSKYKAVVINSCTVKNPSQQAID 68
Query: 109 TLIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ KC+ A PLV+AGCVPQ + + SIVGV Q+ ++ E VE+ L
Sbjct: 69 VVQKKCEEANVPLVIAGCVPQADPKACHCSKKCSIVGVDQLHKITEAVEKATHNEGQSYL 128
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
R L +D VR N ++++ GC AC+YCKTKHARG L SY +E LV RV+ +
Sbjct: 129 ERGALVDID-DHVRSNPLIDVIVTCTGCENACSYCKTKHARGGLRSYPIEELVKRVQQSV 187
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+GVKE+ L+ ED GAYG DI P +L I + DG MLRIGM NPP+I+++ E
Sbjct: 188 DEGVKEIRLTGEDIGAYGLDINDTFPHMLERICEVV--DGKAMLRIGMVNPPYIIKYFDE 245
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I +L PC + FLH+P+QSGS +VL AM R+YT +F V + L VPG+ IATDIIC
Sbjct: 246 IVNILLRPCCFKFLHIPIQSGSTSVLDAMKRKYTREEFDDVCNRLRISVPGISIATDIIC 305
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFP ETDED +T+ I+++KFP V+ISQ Y RPGTPAA+MK++ S +VK+RSRE+T +F
Sbjct: 306 GFPTETDEDHKKTLECIEKHKFPVVNISQMYIRPGTPAAKMKQINSKIVKQRSREVTELF 365
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALVKITSV 465
+++ PY + G+ +WI E+A DGI+ GH +VQV+VP N+LG S VKI
Sbjct: 366 DSYLPYTNLVGKECVVWINEMAHDGINYAGHDISFVQVIVPHCENENLLGKSVRVKIIEA 425
Query: 466 GRWSVFGEVIKIL 478
G++ V E+I+IL
Sbjct: 426 GKFFVRSEIIEIL 438
>gi|86171407|ref|XP_966205.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
gi|46361171|emb|CAG25035.1| radical SAM protein, putative [Plasmodium falciparum 3D7]
Length = 860
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/363 (47%), Positives = 254/363 (69%), Gaps = 8/363 (2%)
Query: 121 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-RKKLPALDLPK 179
++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ V+ L KK+ +L+LPK
Sbjct: 499 IIVCGCVPQAEKDMEIFENVSLVGVNNIDKIVDVVENVINGYNVQYLKTSKKMTSLNLPK 558
Query: 180 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSS 238
+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + + R+ V + +KE+WL+S
Sbjct: 559 IRKNKYIEIININNGCLGNCTYCKTKFARGDLSSYNIRDITDRITYVCNEENIKEIWLTS 618
Query: 239 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 298
EDTGAYG DI ++ LL I+ + + M+R+GMTNPP+IL+H+K+I +L+H +Y
Sbjct: 619 EDTGAYGIDINTDIVNLLKNILKSVEH-TNVMIRLGMTNPPYILKHIKDICTLLKHKNMY 677
Query: 299 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 358
F+H+PVQSGS+ VL MNREYT+ DF +V+ L + VP + I+TDIICGFP E+++D
Sbjct: 678 EFIHIPVQSGSNNVLKNMNREYTIEDFIFLVENLRKYVPNITISTDIICGFPYESEQDHQ 737
Query: 359 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-PYLGME 417
TV+LIK ++FP ++ISQFYPR GT A MKK+ + +VKKRSR++T F ++ Y ++
Sbjct: 738 NTVHLIKNFQFPILNISQFYPRRGTVAYNMKKINTKIVKKRSRDVTEAFLSYEHNYKFLQ 797
Query: 418 GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKITSVGRWSVFGE 473
++++ TEI++ H++GHTK YV+VL+P+ N +LG A KI S +W V E
Sbjct: 798 NTIQQVLFTEISSKSEHIIGHTKQYVKVLLPNENNKNIELLGNFATCKILSTHKWHVVAE 857
Query: 474 VIK 476
+ K
Sbjct: 858 LNK 860
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAM 107
+P IY K+FGC+HN SDSE+M G L+ +G+ EE DI ++N ++ +M
Sbjct: 239 LPENYKIYFKSFGCAHNSSDSEFMMGLLANYGFKFVKKIEECDICIVNSCTVKNPSEESM 298
Query: 108 DTLIAKCK 115
T+I K
Sbjct: 299 KTIINYVK 306
>gi|221057894|ref|XP_002261455.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
gi|194247460|emb|CAQ40860.1| hypothetical protein, conserved [Plasmodium knowlesi strain H]
Length = 750
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/371 (48%), Positives = 256/371 (69%), Gaps = 8/371 (2%)
Query: 111 IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HR 169
IAK ++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L H
Sbjct: 380 IAKAPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKHS 439
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-A 228
KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V
Sbjct: 440 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCNE 499
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+ +KE+WL+SEDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I
Sbjct: 500 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHIKDI 558
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICG
Sbjct: 559 CNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATDIICG 618
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP E ++D +TV+L+K+Y+FP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F
Sbjct: 619 FPYEMEKDHLETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFL 678
Query: 409 AFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKIT 463
++T Y +EG +R+ TE++ L+GHTK YV+VL+ + N +L A KI
Sbjct: 679 SYTNNYKFLEGTTQRVLFTEVSTKSDDLIGHTKQYVKVLLQNRNNENSHLLSHFANCKIV 738
Query: 464 SVGRWSVFGEV 474
S +W V E+
Sbjct: 739 SAHKWHVVAEL 749
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAM 107
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN ++ +M
Sbjct: 208 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 267
Query: 108 DTLI 111
T+I
Sbjct: 268 KTII 271
>gi|341883251|gb|EGT39186.1| hypothetical protein CAEBREN_03885 [Caenorhabditis brenneri]
Length = 432
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 185/354 (52%), Positives = 254/354 (71%), Gaps = 5/354 (1%)
Query: 123 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR 181
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + AL LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDALLSLPKMR 60
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI-ADGVKEVWLSSED 240
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R +GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHEEGVKELWLTSED 120
Query: 241 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 300
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLKELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 301 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360
LH+PVQS SDAVL+ M REY+ F + D +IE VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLTDMKREYSRRHFEQIADYMIEHVPNIYIATDMILAFPTETLEDFEES 238
Query: 361 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 419
++L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T + G
Sbjct: 239 MDLVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRFTEDRIGE 298
Query: 420 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
V + +TEIAAD +H VGH K Y Q+LVP +G V++TSV ++S+ +
Sbjct: 299 VHNVLVTEIAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTSVTKFSMISK 352
>gi|156101079|ref|XP_001616233.1| tRNA modifying enzyme [Plasmodium vivax Sal-1]
gi|148805107|gb|EDL46506.1| tRNA modifying enzyme, putative [Plasmodium vivax]
Length = 799
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 179/372 (48%), Positives = 259/372 (69%), Gaps = 13/372 (3%)
Query: 116 SAKKP-----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR- 169
SAK P ++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L +
Sbjct: 429 SAKPPRGDIKIIVCGCVPQAEKDMEIFENVSLVGVTNIDKIVDVVENVINGYNVRYLKQA 488
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
KK+ +L+LPK+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V ++
Sbjct: 489 KKMTSLNLPKIRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSE 548
Query: 230 -GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+KE+WL+SEDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I
Sbjct: 549 ENIKEIWLTSEDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHVKDI 607
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+L+H +Y F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICG
Sbjct: 608 CNLLKHKNMYEFIHIPVQSGSNRVLKNMNREYEIEDFIYLVENLRKDVPNITIATDIICG 667
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP E ++D +TV+L+K+Y+FP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F
Sbjct: 668 FPYEMEKDHVETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFL 727
Query: 409 AFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKIT 463
++T Y +EG +R+ TE++ L+GHTK YV+VL+ + N +L A KI
Sbjct: 728 SYTNNYKFLEGTTQRVLFTEVSTKSEDLIGHTKQYVKVLLQNRNNENAHLLSHFANCKIV 787
Query: 464 SVGRWSVFGEVI 475
S +W V E++
Sbjct: 788 SAHKWHVVAELV 799
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAM 107
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN ++ +M
Sbjct: 252 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 311
Query: 108 DTLI 111
T+I
Sbjct: 312 KTII 315
>gi|71996771|ref|NP_740783.2| Protein Y92H12BL.1 [Caenorhabditis elegans]
gi|75017352|sp|Q8MXQ7.2|CDKAL_CAEEL RecName: Full=Threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=CDKAL1-like
protein; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|373220306|emb|CCD72949.1| Protein Y92H12BL.1 [Caenorhabditis elegans]
Length = 425
Score = 369 bits (946), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 123 VAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVR 181
+AGCV Q + L+ VSIVGV+QIDR+VEVV ETLKG++VRLL R + A L LPK+R
Sbjct: 1 MAGCVSQAAPSEPWLQNVSIVGVKQIDRIVEVVGETLKGNKVRLLTRNRPDAVLSLPKMR 60
Query: 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSSED 240
+N+ +E+L I+ GCL CTYCKTK ARG L SY + LV + R D GVKE+WL+SED
Sbjct: 61 KNELIEVLSISTGCLNNCTYCKTKMARGDLVSYPLADLVEQARAAFHDEGVKELWLTSED 120
Query: 241 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 300
GA+GRDIG+ LP LL +V +P DGS M+R+GMTNPP+IL+HL+EIAE+L HP VY+F
Sbjct: 121 LGAWGRDIGLVLPDLLRELVKVIP-DGS-MMRLGMTNPPYILDHLEEIAEILNHPKVYAF 178
Query: 301 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360
LH+PVQS SDAVL+ M REY+ F + D +I VP + IATD+I FP ET EDF ++
Sbjct: 179 LHIPVQSASDAVLNDMKREYSRRHFEQIADYMIANVPNIYIATDMILAFPTETLEDFEES 238
Query: 361 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-GR 419
+ L+++YKFP + I+Q+YPR GTPAAR+KK+ + +KR+ ++ +F ++T Y G
Sbjct: 239 MELVRKYKFPSLFINQYYPRSGTPAARLKKIDTVEARKRTAAMSELFRSYTRYTDERIGE 298
Query: 420 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+ R+ +TE+AAD +H VGH K Y Q+LVP +G V++T+V ++S+ +
Sbjct: 299 LHRVLVTEVAADKLHGVGHNKSYEQILVPLEYCKMGEWIEVRVTAVTKFSMISK 352
>gi|389584604|dbj|GAB67336.1| tRNA modifying enzyme, partial [Plasmodium cynomolgi strain B]
Length = 768
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/361 (48%), Positives = 253/361 (70%), Gaps = 8/361 (2%)
Query: 121 LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPALDLPK 179
++V GCVPQ +D++ E VS+VGV ID++V+VVE + G+ VR L + KK+ +L+LPK
Sbjct: 408 IIVCGCVPQAEKDMEIFENVSLVGVSNIDKIVDVVENVINGYNVRYLKQGKKMTSLNLPK 467
Query: 180 VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSS 238
+R+NK++EI+ IN GCLG CTYCKTK ARG L SY + ++ R++ V ++ +KE+WL+S
Sbjct: 468 IRKNKYIEIININNGCLGNCTYCKTKFARGDLASYNIPDIINRIKHVCSEENIKEIWLTS 527
Query: 239 EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 298
EDTGAYG D+ N+ LL I+ + + M+R+GMTNPP+IL+H+K+I +L+H +Y
Sbjct: 528 EDTGAYGIDLNTNIVKLLKEILDTIS-NSDVMIRLGMTNPPYILKHVKDICNLLKHKNMY 586
Query: 299 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 358
F+H+PVQSGS+ VL MNREY + DF +V+ L + VP + IATDIICGFP E + D
Sbjct: 587 EFIHIPVQSGSNRVLKNMNREYQIEDFIYLVENLRKDVPNITIATDIICGFPYEMENDHV 646
Query: 359 QTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-PYLGME 417
+TV+L+K+Y+FP ++ISQFYPR GT A MKK+ + +VKKRSRE+T F ++T Y +E
Sbjct: 647 ETVDLVKKYQFPILNISQFYPRRGTVAYGMKKINTKIVKKRSREVTDAFLSYTNNYKFLE 706
Query: 418 GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKITSVGRWSVFGE 473
G +R+ TE++ L+GHTK YV+VL+ + N +L A KI S +W V E
Sbjct: 707 GTTQRVLFTEVSTKSDDLIGHTKQYVKVLLQNRNNENAHLLSHFANCKIVSAHKWHVVAE 766
Query: 474 V 474
+
Sbjct: 767 L 767
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAM 107
+P IY K+FGC+HN SDSE+M G L +G+ + EE DI +IN ++ +M
Sbjct: 229 LPEKYKIYFKSFGCAHNSSDSEFMMGLLGNYGFQFVKSVEECDICIINSCTVKNPSEESM 288
Query: 108 DTLI 111
T+I
Sbjct: 289 KTII 292
>gi|405971863|gb|EKC36670.1| hypothetical protein CGI_10015051, partial [Crassostrea gigas]
Length = 354
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/322 (52%), Positives = 232/322 (72%), Gaps = 9/322 (2%)
Query: 161 GHEVRLLHRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
GH VRL +KKL AL LPK+R+N +EI+ IN GCL CTYCKTKHARG LGS
Sbjct: 1 GHSVRLYGQKKLEGKKVGGAALSLPKIRKNPLIEIIAINTGCLNQCTYCKTKHARGELGS 60
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 273
Y + +V R + +GV E+WL+SED GAYG DIGV LP LL +V E+ P+G+ M R+
Sbjct: 61 YPPDEIVARAKQSFEEGVIEIWLTSEDLGAYGHDIGVTLPQLLWKLV-EVIPEGARM-RL 118
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
GMTNPP+ILEHL+E+A++LRHP VYSFLHVPVQS SD+VL M REY +DFR V D L
Sbjct: 119 GMTNPPYILEHLEEMAKILRHPRVYSFLHVPVQSASDSVLMDMKREYCQADFRHVTDFLK 178
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393
E VPG+ IATD+ICGFP ET++DF +T+ L++EYKFP + I+QF+PRPGTPAA+M ++P+
Sbjct: 179 ERVPGVTIATDVICGFPTETEDDFEETMKLVEEYKFPSLFINQFFPRPGTPAAKMPRIPA 238
Query: 394 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
+VK+R+++++ +F ++ PY ++++ +TE + D + VGH K Y QVLVP N+
Sbjct: 239 QLVKQRTKKISELFHSYRPYDHKMSEIQQVLVTETSHDQQYYVGHNKFYDQVLVPKNENL 298
Query: 454 LGTSALVKITSVGRWSVFGEVI 475
+G V+I G+ + G+++
Sbjct: 299 MGKMVTVRIVETGKHFLKGQLL 320
>gi|402865946|ref|XP_003897161.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Papio anubis]
Length = 629
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 161/289 (55%), Positives = 215/289 (74%), Gaps = 2/289 (0%)
Query: 187 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 246
EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R + +GV E+WL+SEDTGAYGR
Sbjct: 259 EIISINTGCLNACTYCKTKHARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAYGR 318
Query: 247 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 306
DIG NLP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQ
Sbjct: 319 DIGTNLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQ 376
Query: 307 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366
S SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGFPGETD+DF +TV L++E
Sbjct: 377 SASDSVLMEMKREYCVADFKRVVDFLKEKVPGLTIATDIICGFPGETDQDFQETVKLVEE 436
Query: 367 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWIT 426
YKFP + I+QFYPRPGTPAA+M++VP+ V K+R+++L+ VF +++PY G +++ +T
Sbjct: 437 YKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKDLSRVFHSYSPYNHKIGERQQVLVT 496
Query: 427 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
E + D V H + Y QVLVP +G V I G+ + G+ +
Sbjct: 497 EESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDICESGKHFMKGQPV 545
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 81/113 (71%), Gaps = 7/113 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 60 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 119
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK 160
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+K
Sbjct: 120 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIK 172
>gi|301779277|ref|XP_002925056.1| PREDICTED: CDK5 regulatory subunit-associated protein 1-like
1-like, partial [Ailuropoda melanoleuca]
Length = 429
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 234/338 (69%), Gaps = 25/338 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+M+T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWMRTWGCSHNNSDGEYMAGQLAAYGYEITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKNNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 ERAKQSFQEGVCEIWLTSEDTGAYGRDIGTSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL----IELV 336
I EHL+E+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L E
Sbjct: 297 ISEHLEEMAKILNHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKENQTEGN 356
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374
P Q+ G PG F +T ++++E + Q+ +
Sbjct: 357 PNSQVR-----GVPGSLLTMFWKTQSVVEEPEQSQLKV 389
>gi|74146734|dbj|BAE41351.1| unnamed protein product [Mus musculus]
Length = 351
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 177/348 (50%), Positives = 238/348 (68%), Gaps = 21/348 (6%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F + V PK + + + + S S IPG +
Sbjct: 10 LDDIEDIISQEDSKPQDRQF----SRKHVFPKVRRRNTQKYLQEEPRPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ + I K
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRNSIKK 124
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL- 172
+ K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL +KK
Sbjct: 125 AQEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQKKDN 184
Query: 173 ------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 185 GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERAKQS 244
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+
Sbjct: 245 FQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLE 302
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E
Sbjct: 303 EMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKE 350
>gi|300122464|emb|CBK23034.2| unnamed protein product [Blastocystis hominis]
Length = 465
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 179/431 (41%), Positives = 266/431 (61%), Gaps = 12/431 (2%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD------- 108
P +T+Y+ TFGCSHN SD E M G L+ GY +T EEAD+W+INT + D
Sbjct: 33 PDAKTVYVHTFGCSHNISDGETMKGVLAQGGYNITSKKEEADVWVINTCTVRDKSIQSFR 92
Query: 109 TLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
TL + K K LVVAGC+ + L E + +GV+QI ++ E V+ +
Sbjct: 93 TLYNEAKKTGKKLVVAGCMLEADPSLSSEFHADATLGVRQIAQIKETVDSLFFPPTHHFV 152
Query: 168 H-RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
++P+L LPK+R+++ VEI+PI++GCLGACT+C+T+ ARG L SY ++ ++ RV
Sbjct: 153 SPSDEIPSLQLPKIRKDEGVEIIPISLGCLGACTFCQTRLARGKLWSYPIDEIIKRVHAA 212
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+G+ E+WL+SEDTGAYG D +L LL+ I +E+ D + M++IGMTNPPF+ L+
Sbjct: 213 KVNGISEIWLTSEDTGAYGMDRNSSLMELLDRIRSEVE-DSNVMVKIGMTNPPFLKPMLE 271
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
++ +L H YS+LH+PVQSGSDAVL MNR+Y +SDFR + L + VPG+ ++TDII
Sbjct: 272 PLSTILNHKNFYSYLHIPVQSGSDAVLKRMNRKYQVSDFREICSFLSQHVPGITLSTDII 331
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
GFP E+ ED +T+ L+++ VH S++YPRP T AAR +++P VVK R +EL+
Sbjct: 332 VGFPYESAEDHAKTMQLLRDLNLNIVHYSRYYPRPHTLAARYEQLPIDVVKSRVKELSDW 391
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM-LGTSALVKITSV 465
F+A PY + G+ +W++ G + HTK Y +VL+ + G VK
Sbjct: 392 FKALHPYDELVGKEMDVWVSN-EKTGDYRCCHTKNYTKVLIVDSKEFAAGDVVRVKCVEA 450
Query: 466 GRWSVFGEVIK 476
R+ V +++
Sbjct: 451 QRFHVKARIVE 461
>gi|388502314|gb|AFK39223.1| unknown [Medicago truncatula]
Length = 280
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 210/283 (74%), Gaps = 8/283 (2%)
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
MQIATDIICGFPGETDEDF QTVNLIKEYKF QVHISQFYPRPGTPAARMKKVPS VVK+
Sbjct: 1 MQIATDIICGFPGETDEDFEQTVNLIKEYKFSQVHISQFYPRPGTPAARMKKVPSNVVKR 60
Query: 399 RSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
RSRELT+VFE+FTPY GMEG+VERIWIT+IA DG+HLVGHTKGY+QVLV + +MLG+SA
Sbjct: 61 RSRELTNVFESFTPYSGMEGKVERIWITDIATDGVHLVGHTKGYIQVLVIAPDDMLGSSA 120
Query: 459 LVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNEPDP 518
L KITSVGRWSVFGEVI+ +N D A N+++ + QD S C +Q ++ S EP+
Sbjct: 121 LAKITSVGRWSVFGEVIETINPASDNKALNKQVPT---QDMSSLCCNQTKTCEISEEPES 177
Query: 519 SACGL--ECCEGKITLEEGQVSWIDRFAEDINSQNVIGWLLRKRKNQLKGVENDVALGSK 576
ACG CC ++ ++ N++N+ GW+LRKRKN K VE+++A GS
Sbjct: 178 CACGNVDSCCSQSTLVKTDNSRDTVVLPQNQNNKNLFGWILRKRKNLHKRVESELASGSD 237
Query: 577 KKQEWMGGNMGEWGVVDRALLGGMLVSFLIILALLIHVGFRTL 619
KQE +M +W VD+ALLGG+ +S L I+ALL+ + F L
Sbjct: 238 LKQE---RSMRKWDFVDKALLGGISISILTIIALLVCLRFSVL 277
>gi|388491006|gb|AFK33569.1| unknown [Lotus japonicus]
Length = 180
Score = 336 bits (861), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 155/176 (88%), Positives = 168/176 (95%)
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
MLRIGMTNPPF LEHLKEIAE+LRHPCVYSFLHVPVQSGSD +LSAMNREYT+S+FRTVV
Sbjct: 1 MLRIGMTNPPFTLEHLKEIAEILRHPCVYSFLHVPVQSGSDTILSAMNREYTVSEFRTVV 60
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
DTL ELVPGMQIATDIICGFPGETDEDF+QTVNLIKEYKF QVHISQFYPRPGTPAARMK
Sbjct: 61 DTLTELVPGMQIATDIICGFPGETDEDFSQTVNLIKEYKFSQVHISQFYPRPGTPAARMK 120
Query: 390 KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 445
KVPS VVK+RSRELT+VFEAFTPY GMEG+VERIWIT++A+DG+HLVGHTKG V +
Sbjct: 121 KVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERIWITDVASDGVHLVGHTKGVVLI 176
>gi|440300691|gb|ELP93138.1| radical sam protein, putative [Entamoeba invadens IP1]
Length = 441
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/427 (42%), Positives = 259/427 (60%), Gaps = 17/427 (3%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYAL--TDNSEEADIWLI---------NTQSAMDTLIAK 113
TFGCSHN SDSE M L+ GY L D+ E + + +Q +++ + K
Sbjct: 16 TFGCSHNVSDSEVMQKDLTEAGYILDKADSPLEGNYTAVVVNSCTVKNPSQQSIEQIKKK 75
Query: 114 CKSAKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
C+ P+V+AGCVPQ + K + SIVGV Q+ ++ + VE ++G L R L
Sbjct: 76 CEEMHIPVVLAGCVPQADPKVFKCSKNCSIVGVDQLHKIKDAVESAVRGEGATYLERGPL 135
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
+D + + + ++I+ GC ACTYCKTKHARG L SY + ++ R++ I +GVK
Sbjct: 136 VDIDSYE-KSSPLIDIIVTCTGCENACTYCKTKHARGGLRSYPIIDIIKRIKKSINEGVK 194
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ L+ ED GAYG DIG P +L + + +G M+RIGM NPP+I+++ EI EV
Sbjct: 195 ELRLTGEDIGAYGMDIGDTFPHMLKEMCDVV--EGKAMIRIGMVNPPYIIKYFDEIVEVF 252
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
+ CVY F+H+P+QSGS VL AM R+YT +F V L + +P + IATDIICGFP E
Sbjct: 253 KRKCVYKFIHIPIQSGSTQVLEAMKRKYTREEFDDVCARLRKCIPEITIATDIICGFPTE 312
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
TDED T++ +K ++FP V+ISQ RPGTPAA+MK V S V K+RSRE+T F+++ P
Sbjct: 313 TDEDHKMTLDCLKVHQFPIVNISQMCIRPGTPAAQMKPVNSKVKKQRSREVTEYFDSYFP 372
Query: 413 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN--MLGTSALVKITSVGRWSV 470
Y M G+ ++WI E+A D + H +VQV++ N + G SA+VKI G++ V
Sbjct: 373 YKNMVGKTCQVWINEMAHDKQNYAAHDISFVQVILAPQKNVDLFGKSAIVKIVEAGKFFV 432
Query: 471 FGEVIKI 477
GE + +
Sbjct: 433 KGEFVSL 439
>gi|302806527|ref|XP_002985013.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
gi|300147223|gb|EFJ13888.1| hypothetical protein SELMODRAFT_424158 [Selaginella moellendorffii]
Length = 353
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/261 (64%), Positives = 193/261 (73%), Gaps = 24/261 (9%)
Query: 157 ETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
ETLKGHE RLL R LP+LDLPKVR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV
Sbjct: 24 ETLKGHEARLLRRDALPSLDLPKVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTV 83
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
++LV R++TV+++G RDIG N+P LL A+VA LP
Sbjct: 84 DTLVQRLKTVVSEG---------------RDIGANIPALLRALVAALPHRQKY------- 121
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
N P + HL HPCVYSFLHV VQSG D+VL M REYT S+FR +VDTL LV
Sbjct: 122 NAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFSEFRKIVDTLTRLV 179
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P + IATDIICGFPGET EDF++ + LI+EY FPQVHISQFYPRPGTPAA MK+VP+ V
Sbjct: 180 PEIHIATDIICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPGTPAALMKRVPTLEV 239
Query: 397 KKRSRELTSVFEAFTPYLGME 417
KKRSR LTS+FE+FTPY GME
Sbjct: 240 KKRSRSLTSLFESFTPYAGME 260
>gi|32480090|emb|CAE01708.1| OSJNBb0086G13.6 [Oryza sativa Japonica Group]
Length = 558
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 171/257 (66%), Positives = 195/257 (75%), Gaps = 35/257 (13%)
Query: 1 MEDIEDLLAGSGGGGAPPG--FRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSP----K 54
MEDIED+L +G G RLP+ AV V PK +PR S+ P +
Sbjct: 3 MEDIEDVLGPAGIAGGGAAPGLRLPLAAVAVKPK----RPRS-----SRVAQTRPQPEAR 53
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT QSDSEYM+GQLSAFGYA+T+ E AD+WLINT QSAM
Sbjct: 54 IPGT-------------QSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAM 100
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
TLI+KCKSA KPLVVAGCVPQGSRDLKELEG+S++GVQQIDRVVEVVEETLKGHEVRLL
Sbjct: 101 TTLISKCKSANKPLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLL 160
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
RK LP+LDLPKVR+NKF+EILPINVGCLGACTYCKTKHARGHLGSYT+ESLV RV+ V+
Sbjct: 161 SRKTLPSLDLPKVRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVV 220
Query: 228 ADGVKEVWLSSEDTGAY 244
++GV+E+WLSSEDTGAY
Sbjct: 221 SEGVREIWLSSEDTGAY 237
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 172/321 (53%), Positives = 207/321 (64%), Gaps = 32/321 (9%)
Query: 315 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374
AMNREYT+S+FR VVDTL ELVPGMQIATDIICGFPGETDEDF+QTVNL+K+Y FPQVHI
Sbjct: 253 AMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQTVNLVKQYLFPQVHI 312
Query: 375 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH 434
SQFYPRPGTPAARMKKVPS VKKRSRELTSVFE+F+PY GMEG+VERIWITEIA DG+H
Sbjct: 313 SQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGKVERIWITEIATDGVH 372
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI------KILNQVDDKIASN 488
LVGHTKGY+QVLV + +MLGTSA VKITSVGRWSVFGEVI K + +
Sbjct: 373 LVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEGSVVAKETQKHNHSELQE 432
Query: 489 RRISSQVRQ------DKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWIDR 542
SQV + D C +C+ + + C+ P+ S G T +E S + R
Sbjct: 433 EYRPSQVEEATCCGTDSCGACTCSDAAQQCNPGPERSENSTPQSCGDATHQEAVQSKLVR 492
Query: 543 FAEDINSQNVIGWLLRKRKNQLKGVENDVALGSKKKQEWMGGNMG--EWGVVDRALLGGM 600
R + +K E+D A K+ E N+ + VD L GG+
Sbjct: 493 ---------------RNVEGAVKSSESDTA---KQVGEIQRLNVAARRFPDVDTILWGGL 534
Query: 601 LVSFLIILALLIHVGFRTLST 621
VSF + L+ + ++ ST
Sbjct: 535 AVSFATTVTLIALLAYKISST 555
>gi|260841717|ref|XP_002614057.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
gi|229299447|gb|EEN70066.1| hypothetical protein BRAFLDRAFT_67358 [Branchiostoma floridae]
Length = 316
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 157/295 (53%), Positives = 198/295 (67%), Gaps = 26/295 (8%)
Query: 181 RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSED 240
RRN V I P N CL CTYCKTKHARG LGSY E +V R R +GV E+WL+SED
Sbjct: 22 RRN--VLIFPSN-SCLNQCTYCKTKHARGELGSYPPEEIVSRARQSFEEGVVEIWLTSED 78
Query: 241 TGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSF 300
TGAYG+DIGV LP LL +V E+ P+G MLR+GMTNPP+ILEHL+E+A++L HP VY+F
Sbjct: 79 TGAYGKDIGVTLPELLWRLV-EVIPEGC-MLRVGMTNPPYILEHLEEMAKILSHPRVYAF 136
Query: 301 LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360
LHVPVQ+ SD+VL M REY LSDF+ VVD L E VP + IATD+ICGFP ET EDF +T
Sbjct: 137 LHVPVQAASDSVLMDMRREYCLSDFKQVVDFLKERVPAVTIATDVICGFPTETAEDFEET 196
Query: 361 VNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRV 420
+ L++EYKFP + I+QF+PRPGTPAA+M++VP V G +
Sbjct: 197 LQLVEEYKFPSLFINQFFPRPGTPAAKMRRVPPQEV---------------------GEI 235
Query: 421 ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
+ + +TE + D V H K Y QVLVP +LG V+ITS G+ + G ++
Sbjct: 236 QNVLVTEESHDKKFYVAHNKYYDQVLVPKDEKLLGKMVTVEITSTGKHYLMGRLL 290
>gi|212274679|ref|NP_001130719.1| uncharacterized protein LOC100191823 [Zea mays]
gi|194689936|gb|ACF79052.1| unknown [Zea mays]
Length = 308
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 170/315 (53%), Positives = 211/315 (66%), Gaps = 19/315 (6%)
Query: 316 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375
MNREYT+ +FR VVDTL ELVPGMQIATDIICGFPGETDEDF++TVNL+KEY+FPQVHIS
Sbjct: 1 MNREYTVGEFRKVVDTLCELVPGMQIATDIICGFPGETDEDFSETVNLVKEYQFPQVHIS 60
Query: 376 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 435
QFYPRPGTPAARMKKVPS VKKRSRELTSVFE+F+PY GMEG+VE+IWITEIA+DG+HL
Sbjct: 61 QFYPRPGTPAARMKKVPSNEVKKRSRELTSVFESFSPYQGMEGKVEKIWITEIASDGVHL 120
Query: 436 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK-ILNQVDDKIASN-----R 489
VGHTKGY+QVLV + +MLGTSA KITSVGRWSVFG V++ + ++ I ++
Sbjct: 121 VGHTKGYIQVLVTAPDSMLGTSADAKITSVGRWSVFGVVVEGSVAVIEAPIQTSAELQEE 180
Query: 490 RISSQVRQDKCSSCSSQNESSACSNEPDPSACGLECCEGKITLEEGQVSWIDRFAEDINS 549
+ +QV + C + S + ACSNE P CG + C L Q D
Sbjct: 181 HVQNQVEEAGCCATDSCG-ACACSNEAQP--CGPDRCGD--ALRAPQTCGGDVVT---TR 232
Query: 550 QNVIGWLLRKRK--NQLKGVENDVALGSKKKQEWMGGNMGEWGV-VDRALLGGMLVSFLI 606
Q + L +R KG ++ A + K+Q + GV +D L G+ SF +
Sbjct: 233 QEALQPTLVRRSVDGTTKGSDSTAAHSAGKEQRVE--VVTRRGVDIDTVLWCGLAASFAV 290
Query: 607 ILALLIHVGFRTLST 621
+ALL + + LST
Sbjct: 291 TVALLALLTSKILST 305
>gi|302806569|ref|XP_002985034.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
gi|300147244|gb|EFJ13909.1| hypothetical protein SELMODRAFT_424054 [Selaginella moellendorffii]
Length = 613
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 176/365 (48%), Positives = 217/365 (59%), Gaps = 49/365 (13%)
Query: 88 ALTDNSEEADIWLINTQS----AMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIV 143
A++D+ + AD+WLINT + M+TLI K K+A PLV + G + +
Sbjct: 2 AISDSPQRADLWLINTCTVKAPTMETLIRKGKAASIPLVDSWMRSSGFKRSR-------- 53
Query: 144 GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
Q+ ETLKGHE LL R LP+LDLPKV +NKFVEI+PINVGCLGACTYCK
Sbjct: 54 SCQRHRSAANTAGETLKGHEAWLLRRDALPSLDLPKVCKNKFVEIIPINVGCLGACTYCK 113
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263
TKHARGHLGSYTV++LV R++TV+++G RDIG N+P LL A+VA L
Sbjct: 114 TKHARGHLGSYTVDTLVQRLKTVVSEG---------------RDIGANIPALLCALVAAL 158
Query: 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 323
P N P + HL HPCVYSFLHV VQSG D+VL M REYT S
Sbjct: 159 P-------HRQKYNAPNL--HLTASGGNGCHPCVYSFLHVLVQSGRDSVLEGMKREYTFS 209
Query: 324 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383
+FR +VDTL LVP + IATD+ICGFPGET EDF++ + LI+EY FPQVHISQFYPRP
Sbjct: 210 EFRKIVDTLTRLVPEIHIATDVICGFPGETSEDFDRIMELIREYTFPQVHISQFYPRPVF 269
Query: 384 PAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME-----------GRVERIWITEIAADG 432
+ + + S E P+L G+ R+W+T AADG
Sbjct: 270 ILSISLDRNTGGSNETGSNARS--EEMKPFLDKSVRIVHSLRRNGGKTYRVWVTNTAADG 327
Query: 433 IHLVG 437
IHLVG
Sbjct: 328 IHLVG 332
>gi|70939009|ref|XP_740104.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56517584|emb|CAH81443.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 284
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/285 (49%), Positives = 198/285 (69%), Gaps = 7/285 (2%)
Query: 197 GACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPIL 255
G CTYC TK ARG+L SY ++ +V R++ V D +KE+WL+SED+GAYG D+ N+ L
Sbjct: 1 GNCTYCNTKFARGNLSSYNIKDIVSRIKHVYTQDNIKEIWLTSEDSGAYGIDLNTNIVNL 60
Query: 256 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 315
L I+ + D M+RIGMTNPP+IL+H+K+I ++L+H +Y F+H+PVQSGS+ VL
Sbjct: 61 LKEIL-DYVQDTDIMIRIGMTNPPYILKHVKDICKLLKHKNMYEFIHIPVQSGSNNVLKD 119
Query: 316 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375
MNREY + DF +VD L + VP M IATDIICGFP E++ D +TVNL+K YKFP ++IS
Sbjct: 120 MNREYKIEDFIYLVDNLRKYVPNMTIATDIICGFPYESENDHLETVNLVKTYKFPILNIS 179
Query: 376 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF-TPYLGMEGRVERIWITEIAADGIH 434
QFYPR GT A MKK+ + +VKKRSRE+T F ++ Y ++ ++++ TEI++ H
Sbjct: 180 QFYPRRGTVAYNMKKIDTKIVKKRSREVTDAFLSYQNNYEFLQDTIQKVLFTEISSKSEH 239
Query: 435 LVGHTKGYVQVLV----PSTGNMLGTSALVKITSVGRWSVFGEVI 475
++GHTK YV+VL+ N+LG A KI S +W VF E++
Sbjct: 240 IIGHTKQYVKVLLHNNNSENENLLGKFATCKIVSTHKWHVFAELV 284
>gi|392354304|ref|XP_003751735.1| PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase
[Rattus norvegicus]
Length = 423
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 183/247 (74%), Gaps = 2/247 (0%)
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+ILEHL+E+
Sbjct: 61 EGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLV-EVIPEGA-MLRLGMTNPPYILEHLEEM 118
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICG
Sbjct: 119 AKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICG 178
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+ K+VP+ V K+R+++L+ VF
Sbjct: 179 FPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDLSRVFH 238
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
++ PY G +++ +TE + D V H + Y QVLVP +G V I G+
Sbjct: 239 SYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYESGKH 298
Query: 469 SVFGEVI 475
+ G+ +
Sbjct: 299 FLKGQPV 305
>gi|440904068|gb|ELR54635.1| CDK5 regulatory subunit-associated protein 1-like 1, partial [Bos
grunniens mutus]
Length = 302
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/246 (56%), Positives = 180/246 (73%), Gaps = 16/246 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPG + I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+ +
Sbjct: 59 IPGIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHF 118
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K + K +V+AGCVPQ L+G+SI+GVQQIDRVVEVVEET+KGH VRLL
Sbjct: 119 RNSIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLL 178
Query: 168 HRKKLPA-------LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK LDLPK+R+N +EI+ IN GCL ACTYCKTKHARG+L SY ++ LV
Sbjct: 179 GQKKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELV 238
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + +GV E+WL+SEDTGAYGRDIG +LP LL +V E+ P+G+ MLR+GMTNPP+
Sbjct: 239 DRAKQSFQEGVCEIWLTSEDTGAYGRDIGSSLPALLWKLV-EVIPEGA-MLRLGMTNPPY 296
Query: 281 ILEHLK 286
ILEHL+
Sbjct: 297 ILEHLE 302
>gi|407462932|ref|YP_006774249.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046554|gb|AFS81307.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus
koreensis AR1]
Length = 422
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 250/426 (58%), Gaps = 21/426 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++++GCS + +DSE ++G + G+ L ++SEE+D+ ++ T S D +I + KS
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSEESDLNIVVTCSVKDATANKMIHRIKS 63
Query: 117 AK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K KPLVVAGC+P+ ++ E E S++G + + ++V++ TL+G + L L
Sbjct: 64 LKTKPLVVAGCLPKAEKETVERFSENASLLGPNSLGKTLQVIDSTLQGRKEIALEDSDLS 123
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G KE
Sbjct: 124 KVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEIDEGCKE 183
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+WL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ E
Sbjct: 184 IWLTSTDNGCYGLDIGTDLPALINA-VSEIPED--FMVRVGMMNPMYMPRIKEKLIESYE 240
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+ V+ FLH+PVQSGSD VL M R +T FR +V E P I+TDII GFP ET
Sbjct: 241 NDKVFKFLHIPVQSGSDKVLQDMKRGHTAGTFREIVKKAKERFPNFTISTDIIVGFPSET 300
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-- 411
EDF +TV L+ E + V++S++ RPGT AA +++ A VK RS+E+ +
Sbjct: 301 REDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKEIFEQINKISLD 360
Query: 412 ---PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
++G +G V E DGI G Y V VP + +G S V+I +
Sbjct: 361 NNKKWIGWKGNV---LFDEKTEDGIK--GRNFAYKPVFVPEQVD-IGQSHTVEIIDATQN 414
Query: 469 SVFGEV 474
S+ G++
Sbjct: 415 SLLGKI 420
>gi|18978284|ref|NP_579641.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|397652439|ref|YP_006493020.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
gi|18894107|gb|AAL82036.1| hypothetical protein PF1912 [Pyrococcus furiosus DSM 3638]
gi|393190030|gb|AFN04728.1| 2-methylthioadenine synthetase [Pyrococcus furiosus COM1]
Length = 425
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/370 (39%), Positives = 219/370 (59%), Gaps = 18/370 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------IAK 113
+Y++ +GC+ N++D E MAG L + GY + + E ADI ++N+ + D I +
Sbjct: 4 VYIENYGCARNRADGEIMAGLLLSSGYEIVEGEENADIVVVNSCAVKDPTEVKIARRIRE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
K ++V GC+P + D + +++GV+ IDR+V+ VE L+G + V ++
Sbjct: 64 LLDRGKKVIVTGCLPHVNPDAIDERVSAVLGVKSIDRIVQAVEYALRGEKLISVPDWRKR 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L LD P++ ILPI GCL CTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 124 NLDKLDFPRLSPRGVHFILPIAEGCLNGCTYCATRSARGVLKSYSPEKIVEWVKWAIRQG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVLKFLDELIE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ VY FLH+PVQSG + +L M R YT+ +F +V+ P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 406
GE++E F +++ LIK K +V++S++ PRPGT AA+ K++P VVK+RSR + V
Sbjct: 301 GESEEAFQRSLELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRIMHRVRLQI 360
Query: 407 -FEAFTPYLG 415
+E Y+G
Sbjct: 361 SYEINQRYVG 370
>gi|14591622|ref|NP_143704.1| hypothetical protein PH1875 [Pyrococcus horikoshii OT3]
gi|3258314|dbj|BAA30997.1| 432aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 432
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 18/375 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAMDTLIAK 113
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N T+ + I +
Sbjct: 11 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 70
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 71 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 130
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 131 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 190
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 191 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 247
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFP
Sbjct: 248 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 307
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 406
GE++E F ++V LIK + +V++S++ PRPGT AA+ K++P VVK+RSR L +
Sbjct: 308 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 367
Query: 407 -FEAFTPYLGMEGRV 420
+E Y+G + +V
Sbjct: 368 SYEINRKYIGKKVKV 382
>gi|14917063|sp|O59545.2|AMTAB_PYRHO RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 425
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 18/375 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAMDTLIAK 113
+Y++ +GC+ N++D E MA L G+ + ++ EE++I ++N T+ + I +
Sbjct: 4 VYIENYGCARNRADGEIMAALLYLSGHEIVESPEESEIVVVNSCAVKDPTERKIARRIRE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
K ++V GC+P + D+ + +I+GV+ IDR+V+ VE ++G + V ++
Sbjct: 64 LLDNGKKVIVTGCLPHVNPDVIDERVSAILGVKSIDRIVQAVEYAMRGEKLISVPDWKKR 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L LD P++ ILPI GCL ACTYC T+ ARG L SY+ E ++G V+ I G
Sbjct: 124 NLDKLDFPRLSPRNVYFILPIAEGCLNACTYCATRLARGVLKSYSPEKIIGWVKWAIKQG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+WLS+EDTG YG DIG NL L++ I A +G +R+GM NP +L+ L E+ +
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLIDEITA---IEGEFRIRVGMMNPNHVLKFLDELID 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ VY FLH+PVQSG + +L M R YT+ +F +V P + + TDII GFP
Sbjct: 241 AYKDEKVYKFLHLPVQSGDNEILRKMGRMYTVEEFEEIVKAFRREFPELNLHTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 406
GE++E F ++V LIK + +V++S++ PRPGT AA+ K++P VVK+RSR L +
Sbjct: 301 GESEEAFQRSVELIKRIRPDKVNVSRYSPRPGTIAAKWKQLPGWVVKERSRLLHRIRLQI 360
Query: 407 -FEAFTPYLGMEGRV 420
+E Y+G + +V
Sbjct: 361 SYEINRKYIGKKVKV 375
>gi|14521928|ref|NP_127405.1| hypothetical protein PAB1134 [Pyrococcus abyssi GE5]
gi|14916852|sp|Q9UXX9.1|AMTAB_PYRAB RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|5459148|emb|CAB50634.1| Hypothetical protein, UPF0004 family [Pyrococcus abyssi GE5]
gi|380742568|tpe|CCE71202.1| TPA: 2-methylthioadenine synthetase [Pyrococcus abyssi GE5]
Length = 425
Score = 271 bits (694), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 158/430 (36%), Positives = 244/430 (56%), Gaps = 24/430 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAMDTLIAK 113
IY++ +GC+ N++D E MA L G+ + + +E +I ++N T+ + I +
Sbjct: 4 IYIENYGCARNRADGEIMAALLHLAGHEIVYDPDEGEIVVVNSCAVKDPTERKIARRIKE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
+ K ++V GC+P + D+ + I+GV+ IDR+++ VE L+G + V ++
Sbjct: 64 LLDSGKKVIVTGCLPHVNPDVIDERVSGILGVKSIDRIIQAVEYALRGEKLISVPDWRKR 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L LD P++ I+PI GCL ACTYC T+ ARG L SY+ E +VG V+ I G
Sbjct: 124 NLDKLDFPRLSPRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVGWVKWAIKQG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH+PVQSG + +L M R YT+ +F +V + P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNDILRRMGRNYTVEEFEEIVKEFRKKFPDLNLHTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 406
GE DE F ++V LI+ + +V++S++ PRPGT AA+ K++P +VK+RSR L +
Sbjct: 301 GEDDEAFQRSVELIRRIRPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRLLHRIRLQI 360
Query: 407 -FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+E Y+G +VE + E + V T Y V++P GN G + +I +
Sbjct: 361 SYEINQKYIGK--KVEVLIHGEGKKGNVDAV--TMNYKHVILP-FGNS-GEFRIAEIKNA 414
Query: 466 GRWSVFGEVI 475
+ GEV+
Sbjct: 415 TSTYLLGEVM 424
>gi|393795212|ref|ZP_10378576.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 422
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 161/428 (37%), Positives = 247/428 (57%), Gaps = 25/428 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ T S D+ +I + KS
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 117 AK-KPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKSKPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALEDTD 121
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T ++DG
Sbjct: 122 LSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSDGC 181
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+ E
Sbjct: 182 KEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELIES 238
Query: 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+TDII GFP
Sbjct: 239 FSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERYTDFTISTDIIVGFPS 298
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 406
ET EDF +TV L+ E V++S++ RPGT AA +++ ++ VK+RSR + +
Sbjct: 299 ETREDFEKTVELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRIIFNQINKIS 358
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
E ++G +G+V E GI G Y V V +G + VKIT
Sbjct: 359 LENNQKWIGWKGKV---LFDEKTDQGIK--GRNFAYKSVFVKDEIK-IGQTQTVKITDAS 412
Query: 467 RWSVFGEV 474
S+ GE+
Sbjct: 413 IHSIIGEI 420
>gi|407465270|ref|YP_006776152.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
gi|407048458|gb|AFS83210.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosopumilus sp. AR2]
Length = 422
Score = 268 bits (686), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 253/429 (58%), Gaps = 27/429 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++ +GCS + +DSE ++G + G+ LTDNSEE+D+ ++ T S D+ ++ + S
Sbjct: 4 IFVEAYGCSASFADSEMISGLILNGGHTLTDNSEESDLNIVVTCSVKDSTANKMMYRINS 63
Query: 117 AK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K KPL+VAGC+P+ ++ E E S++G + + ++V+ TL G + L L
Sbjct: 64 LKSKPLIVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVINTTLGGQKQVALEDSDLS 123
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G KE
Sbjct: 124 KVGLPKVRLNPSVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQVQTEIKEGCKE 183
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
VWL+S D G YG DIG +LP L+NA V+E+P D M+R+GM NP ++ +++ +
Sbjct: 184 VWLTSTDNGCYGFDIGTDLPTLINA-VSEIPED--FMIRVGMMNPMYMPRIKEKLIDSYD 240
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+ V+ FLH+PVQSGSD VL+ M R +T +R +V + E I+TDII GFP ET
Sbjct: 241 NDKVFKFLHIPVQSGSDKVLNDMKRGHTSKTYREIVSKIKERFVDFTISTDIIIGFPSET 300
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-- 411
+E+F +T++L+ E K V++S++ RPGT AA +++ +A VK+R++ +FE +
Sbjct: 301 EEEFQKTISLLDETKPDVVNLSKYSARPGTEAAEWEQIDAAEVKRRTK---IIFEQISKL 357
Query: 412 ------PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
++G +GRV E+ +GI G Y + V LG S V+IT
Sbjct: 358 SMDSNQKWIGWKGRV---LFDEMTDEGIK--GRNFAYKPIAVEDDVE-LGQSHTVEITDA 411
Query: 466 GRWSVFGEV 474
+ G++
Sbjct: 412 TVKRLVGKI 420
>gi|156337861|ref|XP_001619903.1| hypothetical protein NEMVEDRAFT_v1g149881 [Nematostella vectensis]
gi|156203943|gb|EDO27803.1| predicted protein [Nematostella vectensis]
Length = 202
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/202 (61%), Positives = 155/202 (76%), Gaps = 2/202 (0%)
Query: 195 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI 254
CL CTYCKTKHARG LGSY E +V R + +GV E+WL+SEDTGAYG+DIGV LP
Sbjct: 1 CLNQCTYCKTKHARGDLGSYPPEEIVNRAKQAFNEGVVEMWLTSEDTGAYGKDIGVTLPE 60
Query: 255 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 314
LL +V +P G +RIGMTNPP+ILEHL+E+A++L HP VYSFLHVPVQS S VL+
Sbjct: 61 LLWQLVKVIPEGGR--MRIGMTNPPYILEHLEEMAKILNHPRVYSFLHVPVQSASTNVLA 118
Query: 315 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374
M REY DF VV+ L + VP + IATD+ICGFP ET++DF +T++L+K+YKFP + I
Sbjct: 119 DMKREYIAEDFEHVVNYLRQRVPDLTIATDLICGFPTETEDDFQKTLDLVKKYKFPSLFI 178
Query: 375 SQFYPRPGTPAARMKKVPSAVV 396
+QFYPRPGTPAARMK++P+ V
Sbjct: 179 NQFYPRPGTPAARMKRLPTEEV 200
>gi|315231263|ref|YP_004071699.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
gi|315184291|gb|ADT84476.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus barophilus MP]
Length = 424
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 155/431 (35%), Positives = 247/431 (57%), Gaps = 29/431 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++T+GC+ N++D+E M L GY + D + AD ++NT ++ M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLVNAGYEIVD-LDSADYVIVNTCAVKDPTENHMRKRIKE 61
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
A K ++V GC+P + + + +I+GV+ I+R+ E +E +G ++ + ++ +
Sbjct: 62 LLDAGKKVIVTGCLPHINIEAIDERVSAILGVKSINRITEAIELAERGVKLVDVEQRGID 121
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
L+LP++ ++K V ++PI+ GCL ACTYC T+ ARG L SY+ E +V V+ +A G KE
Sbjct: 122 KLELPRMWKSKVVFVVPISEGCLNACTYCATRFARGILKSYSPEKIVRWVKEALAKGYKE 181
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+ LSSEDTG YG DIG NL LL+ + + +G +R+GM NP +++ L E+ + +
Sbjct: 182 IQLSSEDTGCYGFDIGTNLAELLDELTS---IEGEFRIRVGMMNPNHVIKFLDELIDAYK 238
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+Y FLH+PVQSG + +L M R YT+ DF T+V + P + + TDII GFPGE+
Sbjct: 239 DEKIYKFLHLPVQSGDNEILRKMGRTYTVEDFETIVKAFRKEFPELNLNTDIIVGFPGES 298
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV----KKRSRELTSV--- 406
+E F TV LIK K ++++S+F PRPGT AARM P +V K+RSR L +
Sbjct: 299 EEAFQNTVELIKRVKPDKINVSRFSPRPGTLAARM---PDQIVGWRAKERSRYLHRLRLA 355
Query: 407 --FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+E Y+G E V +T + G T Y ++++P +G VK+T
Sbjct: 356 ISYEINQKYVGRELLV----LTHGEGKKGGVEGRTMNYKEIILPEAP--IGEFVKVKVTK 409
Query: 465 VGRWSVFGEVI 475
+ GE+I
Sbjct: 410 ATATYLMGELI 420
>gi|161528769|ref|YP_001582595.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
gi|160340070|gb|ABX13157.1| MiaB-like tRNA modifying enzyme [Nitrosopumilus maritimus SCM1]
Length = 422
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 160/426 (37%), Positives = 247/426 (57%), Gaps = 21/426 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++++GCS + +DSE ++G + G+ L ++S E+D+ ++ T S D ++ + KS
Sbjct: 4 IFVESYGCSASFADSEMISGLILNGGHTLVEDSSESDLNVVVTCSVKDATANKMVHRIKS 63
Query: 117 AK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K KPLVVAGC+P+ ++ E E S++G + + ++V++ TLKG + L L
Sbjct: 64 LKTKPLVVAGCLPKAEKETVEKFSENASLLGPNSLGKTLQVIDSTLKGRKKIALEDTDLS 123
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +V+T I +G KE
Sbjct: 124 KVGLPKVRLNPAVGIVEIASGCMSECTFCQTKISKGDLQSYRLGDIVRQVKTEINEGCKE 183
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
VWL+S D G YG DIG +LP L+NA V+E+P + M+R+GM NP ++ +++ E
Sbjct: 184 VWLTSTDNGCYGFDIGTDLPSLINA-VSEIPEE--FMIRVGMMNPMYMPRIKEKLIESYD 240
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+ V+ FLH+PVQSGSD VL M R +T FR +V E P I+TDII GFP ET
Sbjct: 241 NDKVFKFLHIPVQSGSDKVLHDMKRGHTAGTFREIVKKARERFPDFTISTDIIVGFPSET 300
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFE 408
EDF +TV L+ E + V++S++ RPGT AA +++ A VK RS+ + E
Sbjct: 301 KEDFEKTVELLDETRPDVVNLSKYSARPGTEAAEWEQIDVAEVKSRSKRIFEQINKISLE 360
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
++G +G V E +GI G Y V VP + +G V+I +
Sbjct: 361 NNKKWIGWKGDV---LFDEQTDEGIK--GRNFAYKPVFVPEQVD-IGQLHAVEIIDATQN 414
Query: 469 SVFGEV 474
S+ G++
Sbjct: 415 SLLGKI 420
>gi|329765663|ref|ZP_08257235.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329137855|gb|EGG42119.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 422
Score = 265 bits (677), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 159/428 (37%), Positives = 246/428 (57%), Gaps = 25/428 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++ +GCS + +DSE ++G + G+ + NS E+D+ ++ T S D+ +I + KS
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTIAKNSTESDLNIVVTCSVKDSTANKMIHRIKS 63
Query: 117 AK-KPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K KPLVVAGC+P+ +L +E +S ++G + + ++V++ TL+G + L
Sbjct: 64 LKSKPLVVAGCLPKA--ELSTVEKISKNASLLGPNSLGKTLQVIDSTLRGTKFVALEDTD 121
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
L + LPKVR N+ V I+ I GC+ C++C+TK A+G L SY + +V +V T +++G
Sbjct: 122 LSKVGLPKVRLNEVVGIVEIASGCMSECSFCQTKLAKGDLQSYRIGDIVRQVETEVSEGC 181
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+WL+S D G YG DI +LP L+ A V+E+P D M+R+GM NP ++ E+ E
Sbjct: 182 KEIWLTSTDNGCYGFDINTDLPTLVKA-VSEIPED--FMIRVGMMNPMYMPRIKNELIES 238
Query: 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
VY FLH+PVQSGSD VL+ M R +T++ F+ VV E I+TDII GFP
Sbjct: 239 FSSDKVYKFLHIPVQSGSDKVLNDMRRGHTVNTFKEVVKKARERFADFTISTDIIVGFPS 298
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 406
ET EDF +T L+ E V++S++ RPGT AA +++ ++ VK+RSR + +
Sbjct: 299 ETREDFEKTFELLNETSPDIVNLSKYSARPGTEAAEWEQIEASEVKRRSRIIFNQINKIS 358
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
E ++G +G+V E GI G Y V V +G + VKIT
Sbjct: 359 LENNQKWIGWKGKV---LFDEKTDQGIK--GRNFAYKSVFVKDEIK-IGQTQTVKITDAS 412
Query: 467 RWSVFGEV 474
S+ GE+
Sbjct: 413 IHSIIGEI 420
>gi|402582010|gb|EJW75956.1| hypothetical protein WUBG_13135, partial [Wuchereria bancrofti]
Length = 240
Score = 265 bits (677), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 133/240 (55%), Positives = 179/240 (74%), Gaps = 10/240 (4%)
Query: 94 EEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 146
E+A +W++N+ ++ ++ + + + K ++VAGCV Q +L+ L+G+SIVGV+
Sbjct: 1 EDASLWILNSCTVKTPSETQLENTVKEARKLNKFIIVAGCVSQAEPNLQFLDGISIVGVK 60
Query: 147 QIDRVVEVVEETLKGHEVRLLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYCKTK 205
QI+ V + VEETLKG+ VR L R+K + L LPK+R+NKF+EIL I+ GCL CTYCKTK
Sbjct: 61 QIECVTQAVEETLKGNCVRFLSRRKPNSNLLLPKIRKNKFIEILAISTGCLNHCTYCKTK 120
Query: 206 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265
ARG+L SY ++SL+ R R ADG KE+WL+SED GA+GRDI + LP LLNA+V E+ P
Sbjct: 121 SARGNLVSYPLDSLLERARNAFADGCKELWLTSEDLGAWGRDIDMVLPDLLNALV-EIIP 179
Query: 266 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 325
+G MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT DF
Sbjct: 180 EG-CMLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDF 238
>gi|57641999|ref|YP_184477.1| 2-methylthioadenine synthetase [Thermococcus kodakarensis KOD1]
gi|57160323|dbj|BAD86253.1| probable 2-methylthioadenine synthetase [Thermococcus kodakarensis
KOD1]
Length = 427
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 218/370 (58%), Gaps = 18/370 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++++GC+ N++D E M L GY L ++ E AD ++NT + M I +
Sbjct: 4 VYVESYGCTRNKADGEIMEAILLRAGYELAESPESADYVVVNTCAVKDPTEHKMARRIRE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
+ K ++ GC+ + D+ + ++GV+ IDR+ E ++ +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPDVIDPRVSGMLGVKSIDRIAEAIDLAERGGKLVSVEGWKER 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
K+ L+LP++ ++ V ++PI+ GCL ACTYC T+ ARG L SY E ++ V+ +A G
Sbjct: 124 KVDKLELPRLWKSGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELVLKWVKEALARG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRIRVGMMNPNHVIKFLDELIE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
V + P VY FLH+PVQSG + VL M R YT+ +F +V +PG+ + TDII GFP
Sbjct: 241 VYQDPKVYKFLHLPVQSGDNEVLRRMGRNYTVEEFEEIVSEFRRKIPGLNLNTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR-----ELTS 405
GE +E F TV L+K + ++++S++ PRPGT AA+ K++P VK+RSR L
Sbjct: 301 GEGEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRILHRLRLQI 360
Query: 406 VFEAFTPYLG 415
+E YLG
Sbjct: 361 AYEINQTYLG 370
>gi|386876686|ref|ZP_10118774.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
gi|386805442|gb|EIJ64973.1| MiaB-like tRNA modifying enzyme, archaeal-type [Candidatus
Nitrosopumilus salaria BD31]
Length = 422
Score = 261 bits (667), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 153/427 (35%), Positives = 248/427 (58%), Gaps = 21/427 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++ +GCS + +DSE ++G + G++L DNS ++D+ ++ T S D+ ++ + KS
Sbjct: 4 IFVEAYGCSASFADSEMISGLIQNGGHSLVDNSSDSDLNIVVTCSVKDSTANKMMHRIKS 63
Query: 117 AK-KPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K KPL+VAGC+P+ +D E + S++G + + ++V+ TL G L L
Sbjct: 64 LKSKPLIVAGCLPKAEKDTVEKFSKKASLLGPNSLGKTLQVINTTLDGRRQIALEDSDLS 123
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ LPKVR N V I+ I GC+ CT+C+TK ++G L SY + +V +++T I +G KE
Sbjct: 124 KVGLPKVRLNPAVGIVEIASGCMSECTFCQTKLSKGDLSSYRLGDIVRQIQTEIKEGCKE 183
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+WL+S D G YG DIG +LP L+NA+V E+P + M+R+GM NP ++ + + E
Sbjct: 184 IWLTSTDNGCYGFDIGTDLPSLVNAVV-EIPEN--FMVRVGMMNPMYMPRIKERLIESFD 240
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+ V+ FLH+PVQ GS+ VL M R +T FR +V + I+TDII GFP ET
Sbjct: 241 NDKVFKFLHIPVQCGSNKVLHDMKRGHTEGTFREIVKKARDRFEQFTISTDIIVGFPSET 300
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VFE 408
+EDF +T+ L+ E K V++S++ RPGT AA K++ + +K+RS+ + E
Sbjct: 301 EEDFQKTIALLDETKPDVVNLSKYSARPGTDAAEWKQLDATEIKRRSKVIFEQISKLSIE 360
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
+ ++G +G+V E+ +GI G Y + V +M G S V+IT V
Sbjct: 361 SNKKWIGWKGKV---LFDEMTDEGIK--GRNYAYKPIAVEDKVSM-GESHTVEITDVTVK 414
Query: 469 SVFGEVI 475
+ G+++
Sbjct: 415 RLIGKIV 421
>gi|332158106|ref|YP_004423385.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
gi|331033569|gb|AEC51381.1| hypothetical protein PNA2_0464 [Pyrococcus sp. NA2]
Length = 429
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/348 (38%), Positives = 212/348 (60%), Gaps = 13/348 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAMDTLIAK 113
+Y++ +GC+ N++D E MA L G+ + + +E++I ++N T+ + I +
Sbjct: 8 VYIENYGCARNRADGEIMAALLHLAGHEIVYDLDESEIVIVNSCAVKDPTERKIARRIRE 67
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
K ++V GC+P + ++ + +++GV+ IDR+V+ VE ++G + V ++
Sbjct: 68 LLDEGKKVIVTGCLPHVNPEVIDERVSAVLGVKSIDRIVQAVEYAIRGEKLISVPDWRKR 127
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L LDLP++ I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G
Sbjct: 128 NLDKLDLPRLSLRTVYFIVPIAEGCLNACTYCATRFARGVLKSYSPEKIVEWVKWAIKQG 187
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+WLS+EDTG YG DIG NL LL+ I A +G +R+GM NP +++ L E+ E
Sbjct: 188 YKEIWLSAEDTGCYGFDIGTNLAKLLDEITA---IEGEFRIRVGMMNPNHVIKFLDELIE 244
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ VY FLH+PVQSG + +L M R YT+ +F +V+ + P + + TDII GFP
Sbjct: 245 AYQDDKVYKFLHLPVQSGDNEILRRMGRNYTVEEFEEIVNAFRKKFPDLNLHTDIIVGFP 304
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
GE++E F ++V LIK K +V++S++ PRPGT AA+ K++P ++K+
Sbjct: 305 GESEEAFQKSVELIKRIKPDKVNVSRYSPRPGTIAAKWKQLPGWLIKE 352
>gi|337284314|ref|YP_004623788.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
gi|334900248|gb|AEH24516.1| hypothetical protein PYCH_08310 [Pyrococcus yayanosii CH1]
Length = 428
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 219/375 (58%), Gaps = 18/375 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++ +GC+ N++D E+MAG L G+ + D EEA+ ++NT + M I +
Sbjct: 4 VHIENYGCARNRADGEFMAGILMLAGHEIVDTIEEAEYVVVNTCAVKDPTEVKMARRIRE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL---HRK 170
A K ++V GC+P + + + +++GV+ IDR+ +E +G ++ + ++
Sbjct: 64 LLDAGKKVIVTGCLPHVNPSVIDERASAVLGVKSIDRIAYAIETAERGEKIISVPDWRKR 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L L LP++ + ++PI GCL ACTYC T+ ARG L SY E +V V+ I G
Sbjct: 124 NLDKLTLPRLPTSGISFVVPIAEGCLNACTYCATRLARGVLKSYRPELIVNWVKWAIERG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
+E+WLS+EDTG YG DIG NL LL+ I A DG +R+GM NP +++ L E+ E
Sbjct: 184 YREIWLSAEDTGCYGFDIGTNLAELLDEITA---IDGEFRIRVGMMNPNHVIKFLDELIE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH+PVQSG + +L M R YT+ +F +V P + + TD+I GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVAEFRRAFPDLNLHTDVIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 406
GE +E F +TV LI+ + +V++S++ PRPGT AA+ K++P ++K+RSR L +
Sbjct: 301 GEDEEAFQRTVALIERIRPDKVNVSRYSPRPGTVAAKWKQLPGWIIKERSRLLHHLRLRI 360
Query: 407 -FEAFTPYLGMEGRV 420
+E Y+G +V
Sbjct: 361 SYEINMEYIGKRLKV 375
>gi|340345320|ref|ZP_08668452.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520461|gb|EGP94184.1| MiaB-like tRNA modifying enzyme [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 422
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 246/427 (57%), Gaps = 21/427 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++ +GCS + +DSE ++G + G+ L +S E+D+ ++ T S D+ ++ + S
Sbjct: 4 IFVEAYGCSASFADSEMISGLIVNGGHTLVKDSSESDLNIVVTCSVKDSTANKMMHRINS 63
Query: 117 AK-KPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K KPLVVAGC+P+ ++ E + S++G + + ++V++ TL+G + L L
Sbjct: 64 LKSKPLVVAGCLPKAEQNTVEKITQKASLLGPNSLGKTLQVIDSTLRGIKQVALEDSDLS 123
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ LPKVR N + I+ I GC+ CT+C+TK ++G L SY + +V +V T I++G KE
Sbjct: 124 KVGLPKVRLNPVIGIIEIASGCMSECTFCQTKLSKGDLKSYRLGDIVRQVETEISEGCKE 183
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+WL+S D G YG DI +LP L+NA V E+P D M+R+GM NP ++ E+ +
Sbjct: 184 IWLTSTDNGCYGLDINTDLPTLINA-VTEIPED--FMIRVGMMNPMYMPRIKNELIKSFD 240
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
VY FLH+PVQSGS+ VL+ M R +T++ + VV E I+TDII GFP ET
Sbjct: 241 SDKVYKFLHIPVQSGSNKVLNDMKRGHTVNTVKEVVKKAKERFENFTISTDIIVGFPSET 300
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR----ELTSV-FE 408
+EDF +T LI E + V++S++ RPGT AA ++ ++ VK+RSR ++ + E
Sbjct: 301 NEDFEKTFKLINEIRPDIVNLSKYSARPGTEAAEWDQIEASEVKRRSRIIFNQINKISLE 360
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
++G G+V E ++GI G + Y V V +G + V+I
Sbjct: 361 NNQKWIGWRGKV---LFDEETSEGIK--GRNEAYKSVFVKDKIK-IGQTHTVEIIDATTH 414
Query: 469 SVFGEVI 475
S+ G+++
Sbjct: 415 SILGKIV 421
>gi|341582604|ref|YP_004763096.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
gi|340810262|gb|AEK73419.1| 2-methylthioadenine synthetase [Thermococcus sp. 4557]
Length = 425
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 207/353 (58%), Gaps = 13/353 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++T+GC+ N++D+E M L + GY L + E AD ++NT + M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILVSAGYGLAETPETADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
A + ++V GC+P + D + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDAGRKVIVTGCLPHVNPDAIDSRVSGILGVKSIDRIAEAISLAERGGKLVSVEGWRER 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
+ L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NIDKLELPRLWKGGVAFVVPISEGCLNACTYCATRFARGVLRSYKPELVVKWVKEALARG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L L E+ +
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLRFLDELVD 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
VY F+H+PVQSG D VL M R YT+ F +V T + V + + TDII GFP
Sbjct: 241 AYTDEKVYRFIHLPVQSGDDEVLKRMGRTYTVEQFEEIVRTFRKKVRDLNLNTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 403
GETDE F TV L++ + ++++S++ PRPGT AA+ K++P K+RSREL
Sbjct: 301 GETDEAFRNTVGLVERVRPDKINVSRYSPRPGTIAAKWKQIPGWKAKERSREL 353
>gi|409096282|ref|ZP_11216306.1| 2-methylthioadenine synthetase [Thermococcus zilligii AN1]
Length = 424
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 210/370 (56%), Gaps = 18/370 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++T+GC+ N++D E M L GY L + E+AD ++NT + M I +
Sbjct: 4 VHVETYGCTRNRADGEIMEAILVRAGYELAETPEDADYVVVNTCAVKDPTEKHMKERIKE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
+ K ++V GC+P + + I+GV+ IDR+ E VE +G + V +
Sbjct: 64 LLDSGKRVIVTGCLPHVNPSTIDPRVSGILGVKSIDRIAEAVERAERGEKFVSVEGWRER 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L+LP++ ++ ++PI GCL ACTYC T ARG L SY E +V V+ + G
Sbjct: 124 NSDKLELPRLWKSGVAFVVPIGEGCLNACTYCSTHFARGVLKSYRPELIVKWVKEALIRG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ LSSEDTG YG DIG NL LL I A +G +R+GM NP ++ L E+ +
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLEEITA---IEGDFRVRVGMMNPNHVIRILDELID 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ VY FLH+PVQSG + VL M R YT+ +F +V VPG+ + TDII GFP
Sbjct: 241 AYQSGKVYKFLHLPVQSGDNGVLRRMGRNYTVEEFEEIVGEFRRKVPGLNLNTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 406
GETDE F T+ L+K K ++++S++ PRPGT AA+ K++P VK+RSR L +
Sbjct: 301 GETDEAFENTLELVKRVKPDKINVSRYSPRPGTIAAKWKQLPGWKVKERSRVLHRLRLGI 360
Query: 407 -FEAFTPYLG 415
+E YLG
Sbjct: 361 AYEINQSYLG 370
>gi|15920732|ref|NP_376401.1| hypothetical protein ST0515 [Sulfolobus tokodaii str. 7]
gi|15621515|dbj|BAB65510.1| tRNA methylthiotransferase [Sulfolobus tokodaii str. 7]
Length = 418
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/427 (36%), Positives = 238/427 (55%), Gaps = 22/427 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++T+GC+ N+ DS M L G+ + D+ +AD+ ++NT + M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLKDRGHDIVDSYNQADVIVLNTCAVRLETEERMKQRIKE 62
Query: 114 CKSAKKPLVVAGCV--PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K K L++AGC+ Q + + SIVG Q ID++VE VE +G + L K+
Sbjct: 63 LKKIGKKLIIAGCLVSSQPALVMSLAPESSIVGAQSIDKIVEAVESNKRG--IFLEESKE 120
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
L P++ K + I+PI GC G C +C TK AR L SY ++V V+ + G
Sbjct: 121 LVT---PRIFEGK-ISIIPIADGCAGDCNFCITKLARKKLRSYPPRNIVNAVKEAVQKGA 176
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ L+++DT AYG DI NL LL I L +G+ M+RIGM P + + EI E+
Sbjct: 177 VEIELTAQDTAAYGLDINYNLVELLKEI---LEIEGNYMIRIGMMTPELAFKQIDEILEI 233
Query: 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
++ VY FLH+PVQSG D VL MNR+YT+ ++R +V + + +P + I TDII G PG
Sbjct: 234 IKDKRVYKFLHLPVQSGDDRVLKLMNRKYTVDEYRELVKEIRDKIPIVNITTDIIIGHPG 293
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--A 409
E DE F T+NLIKE KF ++H++ + RP T +A M +VP ++ K+R + V+E A
Sbjct: 294 EDDEAFQNTINLIKEIKFERIHLAMYSIRPNTRSASMPQVPDSIKKERMKIANEVYEEVA 353
Query: 410 FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 469
++ + G + TE+ G ++G T Y+ V++ + LG VKIT +
Sbjct: 354 YSVHSEYLGSNALVLTTELGRKG-SIIGRTINYIPVVIKDY-DKLGEWINVKITEASFFD 411
Query: 470 VFGEVIK 476
+ G+ I+
Sbjct: 412 LRGKFIQ 418
>gi|375082214|ref|ZP_09729282.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
gi|374743102|gb|EHR79472.1| 2-methylthioadenine synthetase [Thermococcus litoralis DSM 5473]
Length = 422
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/430 (35%), Positives = 240/430 (55%), Gaps = 26/430 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++T+GC+ N++D+E M L GY + + + A+ ++NT + M I +
Sbjct: 3 VHIETYGCTRNKADAEIMEALLLKAGYEIAE-LDSAEYVVVNTCAVKDPTEKHMSKRIKE 61
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
+ K ++V GC+P + D + I+GV+ IDR+VE ++ KG + V +
Sbjct: 62 LIDSGKRVIVTGCLPHVNPDAIDERASGILGVKSIDRIVEAIQLAEKGEKLISVEGWKER 121
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
+ L+LP++ + V ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 122 SIDKLELPRIWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPELIVKWVKEALAKG 181
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNNAIKILDELVE 238
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
V + +Y FLH+PVQSG + +L M R YT+ +F +V + + + + TDII GFP
Sbjct: 239 VYKDEKIYKFLHLPVQSGDNEILRKMGRTYTVEEFEEIVKEFRKHIKDLNLNTDIIVGFP 298
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV--- 406
GE++E F TV L+K K ++++S+F PRPGT AA+M+ ++ VK+RSR L +
Sbjct: 299 GESEEAFQNTVELVKRIKPDKINVSRFSPRPGTLAAKMEGQIVGWKVKERSRYLHRLRLS 358
Query: 407 --FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+E Y+G E V +T + + G T Y +++P +G VK+T
Sbjct: 359 ISYEINKRYIGREVEV----LTHSPGEKGGIEGRTMNYKDIILPDAP--IGEFVRVKVTK 412
Query: 465 VGRWSVFGEV 474
+ G++
Sbjct: 413 ATSTYLMGKL 422
>gi|223478016|ref|YP_002582106.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
gi|214033242|gb|EEB74070.1| tRNA N6-threonylcarbamoyladenosine 2-methylthiotransferase
[Thermococcus sp. AM4]
Length = 424
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 218/370 (58%), Gaps = 18/370 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++++GCS N++D E M L G+ L + E AD ++NT + M I +
Sbjct: 4 VHVESYGCSRNKADGEIMEALLLKAGHELVETPENADYVVVNTCAVKDPTEFKMAKRIRE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 171
+ K ++ GC+ + D + I+GV+ IDR+ E +E +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPDAIDPRVSGILGVKSIDRIAEAIEIAERGGKLVSVEGWRER 123
Query: 172 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 NPDKLELPRLWKPGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGEFRVRVGMMNPNHVLKFLDELIE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ VY FLH+PVQSG + +L M R YT+ +F+ +V + +P + + TDII GFP
Sbjct: 241 AYQDEKVYRFLHLPVQSGDNEILRRMGRNYTVEEFKEIVRAFRKKIPELNLNTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV---- 406
GET+E F TV L+K K ++++S++ RPGT AAR K++P +VK+RSREL +
Sbjct: 301 GETEEAFRNTVELVKRIKPDKINVSRYSARPGTIAARWKQLPGWLVKERSRELHRLRLQI 360
Query: 407 -FEAFTPYLG 415
+E Y+G
Sbjct: 361 AYEINKAYVG 370
>gi|240104185|ref|YP_002960494.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
gi|239911739|gb|ACS34630.1| RNA modification enzyme, MiaB family (MiaB) [Thermococcus
gammatolerans EJ3]
Length = 424
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 212/353 (60%), Gaps = 13/353 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------IAK 113
+Y++++GCS N++D E M L GY L + ++AD ++NT + D I +
Sbjct: 4 VYVESYGCSRNRADGEIMEAILLRAGYELAEGPDKADYVVVNTCAVKDPTELKMVRRIRE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH--RKK 171
+ K ++ GC+ + + + I+GV+ IDR+ E + +G ++ + R++
Sbjct: 64 LLDSGKKVIATGCLVHVNPEAIDPRVSGILGVKSIDRIAEAISVAERGEKLISVEGWRER 123
Query: 172 LP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P L+LP++ + ++PI+ GCL ACTYC T+ ARG L SY E ++ VR ++ G
Sbjct: 124 NPDKLELPRLWKPGVSFVVPISEGCLNACTYCATRFARGVLKSYKPELVIKWVREAVSRG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
+E+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP +L+ L E+ E
Sbjct: 184 YREIILSSEDTGCYGFDIGTNLAELLDEITA---IEGDFRVRVGMMNPNHVLKFLDELIE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH+PVQSG + +L M R YT+ +F +V+ + +P + + TDII GFP
Sbjct: 241 AYQDEKIYKFLHLPVQSGDNEILRRMGRTYTVEEFEEIVNAFRKKIPDLNLNTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 403
GE+DE F TV L+K K ++++S++ RPGT AAR K++P +VK+RSREL
Sbjct: 301 GESDEAFRNTVELVKRVKPDKINVSRYSARPGTIAARWKQLPGWLVKERSREL 353
>gi|385772200|ref|YP_005644766.1| MiaB family RNA modification protein [Sulfolobus islandicus
HVE10/4]
gi|385774915|ref|YP_005647483.1| MiaB family RNA modification protein [Sulfolobus islandicus REY15A]
gi|323473663|gb|ADX84269.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus REY15A]
gi|323476314|gb|ADX81552.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
HVE10/4]
Length = 421
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 147/425 (34%), Positives = 235/425 (55%), Gaps = 19/425 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NT + M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 112 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TDII G
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 408
PGE ++ FN T+ L+KE +F ++H++ + RP T +A M +VP +V KKR + ++E
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354
Query: 409 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
A + +L G R+ TE+ G +VG Y+ V++ S LG VKIT
Sbjct: 355 IALSIHLEYVGSTSRVITTELGRKG-SVVGRLMNYIPVVIKSENVELGKWYNVKITEASF 413
Query: 468 WSVFG 472
+ + G
Sbjct: 414 YDLRG 418
>gi|167042354|gb|ABZ07082.1| putative Radical SAM superfamily protein [uncultured marine
crenarchaeote HF4000_ANIW97M7]
Length = 422
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 151/426 (35%), Positives = 238/426 (55%), Gaps = 21/426 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----K 115
I+++ +GCS + +DSE ++G + G+ L + E+D+ LI T S D + +
Sbjct: 4 IWVEAYGCSSSFADSEMISGLIVNGGHTLVQDQSESDLNLIVTCSVKDVTATRMVHRIKQ 63
Query: 116 SAKKPLVVAGCVPQGSRDLKE--LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
S KPLVVAGC+P+ R E + S++G I + ++V+E TL G +V L L
Sbjct: 64 SQSKPLVVAGCLPKAERHTVEKFAQNASMMGPNSIGKTLQVIEATLNGSKVVALDDTDLS 123
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ +PK+R N V I+ I GC+ CT+C+TK A+G L SY + +V +V+ +ADG KE
Sbjct: 124 KVGIPKIRLNPAVGIVEIANGCMSECTFCQTKLAKGDLNSYRIGDIVRQVKRELADGCKE 183
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+WLSS D G YG DIG +L L+ V+++P D +R+GM NP F+ + +
Sbjct: 184 IWLSSTDNGCYGLDIGEDLSSLIEQ-VSQIPEDFK--IRVGMMNPMFMPRIRDNLLKSFE 240
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+ V+ FLHVPVQSGS+ VL+ M R +T+ F+ VV I+TDII G+P ET
Sbjct: 241 NNKVFRFLHVPVQSGSNDVLNNMKRGHTVETFKDVVRKFRTKFGPFTISTDIIIGYPTET 300
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FE 408
E+F +T+ L+KE + V++S++ RPGT AA M ++ A VK+RS+++T + E
Sbjct: 301 QENFEETIALLKETRPDIVNLSRYSQRPGTVAAEMPQIDVAEVKRRSKQVTELNNNISLE 360
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
++G +G V + + DG + G Y + V +G + V++
Sbjct: 361 NNRKWIGWKGNV----LFDENLDG-QVKGRNFAYKPIFVNEITE-IGQTCTVRVVGATNH 414
Query: 469 SVFGEV 474
S+ GE+
Sbjct: 415 SLIGEI 420
>gi|227826584|ref|YP_002828363.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.14.25]
gi|227829226|ref|YP_002831005.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.S.2.15]
gi|229577995|ref|YP_002836393.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.G.57.14]
gi|229583207|ref|YP_002841606.1| MiaB family RNA modification protein [Sulfolobus islandicus
Y.N.15.51]
gi|229583748|ref|YP_002842249.1| MiaB family RNA modification protein [Sulfolobus islandicus
M.16.27]
gi|238618670|ref|YP_002913495.1| MiaB family RNA modification protein [Sulfolobus islandicus M.16.4]
gi|284996581|ref|YP_003418348.1| MiaB family RNA modification protein [Sulfolobus islandicus
L.D.8.5]
gi|227455673|gb|ACP34360.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.S.2.15]
gi|227458379|gb|ACP37065.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.14.25]
gi|228008709|gb|ACP44471.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.G.57.14]
gi|228013923|gb|ACP49684.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
Y.N.15.51]
gi|228018797|gb|ACP54204.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
M.16.27]
gi|238379739|gb|ACR40827.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus M.16.4]
gi|284444476|gb|ADB85978.1| RNA modification enzyme, MiaB family [Sulfolobus islandicus
L.D.8.5]
Length = 421
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/425 (34%), Positives = 235/425 (55%), Gaps = 19/425 (4%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+TIY++T+GC+ N++D+ M L + GY +N E ADI ++NT + M I
Sbjct: 2 KTIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 112 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ + K LVVAGC+ + L S++G Q ++R+++V++ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIIDVIK-----SEERKIVL 116
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R +
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAVKA 175
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G KE+ L+ +DT AYG D+G ++ L++ + DG M+RIGM P + + +
Sbjct: 176 GAKEIELTGQDTAAYGLDLGGSIS-LVDVVNKVTEIDGDFMIRIGMMTPEQAMRIIDNLI 234
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
EV+R+P VY F+H+PVQSG D VL MNR+YT+ +++ +V + +P I TDII G
Sbjct: 235 EVMRNPKVYKFIHLPVQSGDDRVLKLMNRKYTIDEYKELVSEIRSKIPFANITTDIIIGH 294
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 408
PGE ++ FN T+ L+KE +F ++H++ + RP T +A M +VP +V KKR + ++E
Sbjct: 295 PGEDEDAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSVKKKRIQIANKLYED 354
Query: 409 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
A + +L G R+ TE+ G +VG Y+ V++ S LG VKIT
Sbjct: 355 IALSIHLEYVGSTSRVITTELGRKG-SVVGRLMNYIPVVIRSENVELGKWYNVKITEASF 413
Query: 468 WSVFG 472
+ + G
Sbjct: 414 YDLRG 418
>gi|288931237|ref|YP_003435297.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
gi|288893485|gb|ADC65022.1| MiaB-like tRNA modifying enzyme [Ferroglobus placidus DSM 10642]
Length = 422
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/379 (36%), Positives = 225/379 (59%), Gaps = 17/379 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++T+GC+ NQ+DS+ M G LS YA D++EEAD+ ++NT + + I +
Sbjct: 3 VYIETYGCTMNQADSDIMRGLLSR-EYAFADSAEEADVVIVNTCGVIGFTERKILRRIEE 61
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K K ++ AGC+ + +R ++ ++V + R+ E V+ L G V +++ ++
Sbjct: 62 IKGMGKKVIAAGCLARIARKRLKIAD-ALVSPDNVHRINEAVKAVLNGERVEIINVSRVD 120
Query: 174 ALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
++ V+ + + I+ I+ GCLG C+YC TK ARG L S+++E +V V+ V+ G
Sbjct: 121 KAEISGVKCRLKENAIAIVSISEGCLGNCSYCATKIARGRLRSFSIEKIVEEVKKVVEMG 180
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ L+S+DTGAYG+D G LP LL I +E+ +G +R+GM NP +E L ++ E
Sbjct: 181 YKEIQLTSQDTGAYGKDKGYRLPDLLEKI-SEI--EGDFRVRVGMMNPQHAMEILDDLIE 237
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH+PVQSG + VL M R +T+ DF VV + + ++TD+I GFP
Sbjct: 238 AFKSEKIYKFLHLPVQSGDNKVLMDMRRGHTVEDFEEVVSAFRKAFDDVLLSTDVIVGFP 297
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE-- 408
E++E F +TV LIK K V+I++F PR GT AA++K +P + K+RSR+LT + E
Sbjct: 298 TESEESFEKTVELIKRVKPDIVNITRFSPREGTLAAKLKDIPDWIKKERSRKLTKICEEI 357
Query: 409 AFTPYLGMEGRVERIWITE 427
L G+ R+ +T+
Sbjct: 358 GLENNLKFVGKKLRVLVTK 376
>gi|390961316|ref|YP_006425150.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
gi|390519624|gb|AFL95356.1| MiaB-like tRNA modifying enzyme, archaeal-type [Thermococcus sp.
CL1]
Length = 424
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 201/348 (57%), Gaps = 13/348 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++T+GC+ N++D+E M L GY L + E AD ++NT + M I +
Sbjct: 4 VHVETYGCTRNRADAEMMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
+ K ++ GC+ + + I+GV+ IDR+ E + +G + V +
Sbjct: 64 LLDSGKKVIATGCLVHVNPGAIDPRVSGILGVKSIDRIAEAISVAERGGKLISVEGWRER 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
+ L+LP++ +N ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SIDKLELPRLWKNGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVRWVKEALARG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ LSSEDTG YG DIG NL LL+ I A +G +R+GM NP ++ L E+ E
Sbjct: 184 YKEIQLSSEDTGCYGFDIGTNLAKLLDEITA---IEGDFRVRVGMMNPNHAIKFLDELVE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
R VY FLH+PVQSG D VL M R YT+ +F +V T +P + + TDII GFP
Sbjct: 241 AYRDEKVYKFLHLPVQSGDDEVLRRMGRTYTVEEFEEIVRTFRRRIPHLNLNTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
GET+E F T L+K + ++++S++ PRPGT AAR K++P VK+
Sbjct: 301 GETEEAFQNTAELVKRVRPDKINVSRYSPRPGTVAARWKQLPGWKVKE 348
>gi|312136430|ref|YP_004003767.1| RNA modification enzyme, miab family [Methanothermus fervidus DSM
2088]
gi|311224149|gb|ADP77005.1| RNA modification enzyme, MiaB family [Methanothermus fervidus DSM
2088]
Length = 427
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/431 (34%), Positives = 245/431 (56%), Gaps = 31/431 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+Y++T+GC++N++DS+ +AG L + D+ +EAD+ ++NT Q +I + +
Sbjct: 3 VYIETYGCTYNKADSQIIAGILEKENIKVVDSIDEADVIILNTCYVKQPTEHKIINRIRE 62
Query: 117 AK-----KPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ K L+VAGC+ + LK++ S +G ++ + EVV+ + G++ ++ +
Sbjct: 63 LQNTYKSKELIVAGCMVEIDPEKLKKIAPESAWLGPHKLHKAPEVVKSVINGNKKKVYGK 122
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+++PK R N + I+ I GCLG C+YC T+ ARG L SY ++S+V V+ I D
Sbjct: 123 DSKIKVEMPKKRFNSHIHIVQICEGCLGNCSYCCTRFARGRLYSYPLDSIVKDVKKAIED 182
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G E+ L+++DT AYGRDIG +LP L+N I + DG +R+GM +P + + L E+
Sbjct: 183 GCVEIQLTAQDTAAYGRDIGCDLPTLINKITS---LDGKFKIRVGMMHPKNVKKILDELV 239
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
+ +Y FLH+PVQSGSD VL MNR Y + DF+ +V + +P + IATDII GF
Sbjct: 240 DAYDSEKIYKFLHLPVQSGSDKVLRDMNRGYKVKDFKKIVRKFRKKIPEISIATDIIVGF 299
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 406
P E+ EDF +T L+ E K +H S++ RPG ++++ ++ VK+RSR + +
Sbjct: 300 PTESREDFKKTCELLNEIKPNFIHSSRYAHRPGAKSSKLDELDHNEVKERSRIIEEIKNK 359
Query: 407 --FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS--TGNML------GT 456
E +G E +++ I E G + +G T Y+ V+V S G ++ T
Sbjct: 360 IMREENKKLVGTE---QKVLIVEKGKKGGY-IGRTSSYIPVIVNSGKPGEIIKVKIKEAT 415
Query: 457 SALVKITSVGR 467
S +K +VGR
Sbjct: 416 STYLKGDAVGR 426
>gi|212224708|ref|YP_002307944.1| 2-methylthioadenine synthetase [Thermococcus onnurineus NA1]
gi|212009665|gb|ACJ17047.1| Hypothetical 2-methylthioadenine synthetase [Thermococcus
onnurineus NA1]
Length = 425
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 204/348 (58%), Gaps = 13/348 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++T+GC+ N++D+E M L GY L + E AD ++NT + M I +
Sbjct: 4 VHVETYGCTRNKADAEIMEAILLRAGYELVETPESADYVVVNTCAVKDPTEKHMRERIKE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV---EETLKGHEVRLLHRK 170
+ K ++V GC+ + D+ + I+GV+ IDR+ E + E K V +
Sbjct: 64 LLDSGKRVIVTGCLTHVNPDIIDPRVSGILGVKSIDRIAEAIDLAERDGKLVSVEGWRER 123
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L L LP++ R+ ++PI+ GCL ACTYC T+ ARG L SY E +V V+ +A G
Sbjct: 124 SLDKLGLPRLWRSGVAFVVPISEGCLNACTYCATRFARGVLKSYKPELVVKWVKEALARG 183
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
+E+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 184 YREIQLSSEDTGCYGFDIGTNLAELLDEITS---IEGEFRIRVGMMNPNHAIKFLDELIE 240
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ VY FLH+PVQSG + VL M R YT+ +F +V+ +PG+ + TDII GFP
Sbjct: 241 AYQDEKVYKFLHLPVQSGDNEVLRRMGRTYTVEEFEEIVNEFRRKIPGLNLNTDIIVGFP 300
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
GET+E F TV L+K + ++++S++ PRPGT AA+ K++P VK+
Sbjct: 301 GETEEAFQNTVELVKRVRPDKINVSRYSPRPGTIAAKWKQLPGWKVKE 348
>gi|15899133|ref|NP_343738.1| hypothetical protein SSO2380 [Sulfolobus solfataricus P2]
gi|284173752|ref|ZP_06387721.1| hypothetical protein Ssol98_03728 [Sulfolobus solfataricus 98/2]
gi|384432728|ref|YP_005642086.1| MiaB family RNA modification protein [Sulfolobus solfataricus 98/2]
gi|13815682|gb|AAK42528.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261600882|gb|ACX90485.1| RNA modification enzyme, MiaB family [Sulfolobus solfataricus 98/2]
Length = 421
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/427 (34%), Positives = 239/427 (55%), Gaps = 23/427 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+ IY++T+GC+ N++D+ M L + GY +N E ADI ++NT + M I
Sbjct: 2 KNIYVETYGCALNRADTYVMMTLLKSEGYNFVENPENADIIILNTCAVRLETEERMKQRI 61
Query: 112 AKCKSAKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ + K LVVAGC+ + L S++G Q ++R+V++V+ E R +
Sbjct: 62 KELNTLSKKLVVAGCMSSAEPATVLSIAPNASLIGPQSVERIVDIVKS-----EERKIVI 116
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ AL P+ K + I+P+ GC G C++C TK AR L SY + +V R I
Sbjct: 117 EGDRALITPRTFDGK-IAIIPVADGCAGNCSFCITKLARRKLRSYPLREIVNAARDAIQS 175
Query: 230 GVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
G +E+ L+ +DT AYG D+G ++L ++N VA++ DG M+RIGM P + + +
Sbjct: 176 GAREIELTGQDTAAYGLDLGGSISLVDVVNK-VADI--DGDFMIRIGMMTPEQAMRIMDD 232
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ E +R+P VY F+H+PVQSG D VL MNR+YT+ +++ ++ + +P + I TDII
Sbjct: 233 LIEAIRNPKVYKFIHLPVQSGDDRVLKLMNRKYTVDEYKELISEIRHKIPFVNITTDIIV 292
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G PGE +E FN T+ L+KE +F ++H++ + RP T +A M +VP ++ KKR + ++
Sbjct: 293 GHPGEDEEAFNNTLLLMKELRFERIHLAMYSIRPNTRSASMPQVPDSIKKKRIQIANKLY 352
Query: 408 E--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
E A + +L G R+ TE+ G ++G Y+ V++ S LG VKIT
Sbjct: 353 EDLALSIHLDYVGSTSRVITTELGRKG-SVIGRLMNYIPVVIRSENVELGKWYDVKITEA 411
Query: 466 GRWSVFG 472
+ + G
Sbjct: 412 SFYDLRG 418
>gi|347523463|ref|YP_004781033.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
gi|343460345|gb|AEM38781.1| RNA modification enzyme, MiaB family [Pyrolobus fumarii 1A]
Length = 453
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 236/423 (55%), Gaps = 29/423 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDT---LIAKCKS 116
+Y++T+GC+ N +DS M+ L++ GY + D+ E+AD+ +INT + +DT ++ + K
Sbjct: 6 VYIETYGCALNHADSAIMSSVLASRGYTIVDSIEDADVIIINTCTVRLDTEQRMVKRIKE 65
Query: 117 A------KKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL-- 166
K +V+AGC+ + L + G +V + R+ VE G E+ +
Sbjct: 66 VWRKYGKSKRIVIAGCLAKAQPYLVKRVAPGAVLVSPGNVHRIYLAVE---SGTELLVED 122
Query: 167 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
L RK+LP P+ ++ V + I GCL C +C TK AR +L S +E +V V+
Sbjct: 123 PLERKRLP----PRPWKHGVVAEVVIQEGCLSDCAFCITKFARRYLRSQPIEEIVDYVKK 178
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPFI 281
++ GV E+ L+ +DT YG DI LP LL I V E P +R+GM +P
Sbjct: 179 LVEAGVVEIRLTGQDTATYGVDIYGKRMLPKLLEEIASVVESPDGCKAYVRVGMMSPDQA 238
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
L E+ +++ HPC++ FLH+PVQSG D VL M REYT+ ++R +V +PG+ I
Sbjct: 239 LPFWDELLDIMSHPCIFKFLHIPVQSGDDRVLRVMRREYTVDEYRRMVYEARSKLPGVTI 298
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
ATDII G PGE +E F TV L++E F +VH++Q+ PRP T AAR+ +VP V K+RSR
Sbjct: 299 ATDIIVGHPGEDEEAFENTVRLVEELLFERVHLAQYTPRPRTLAARLPQVPDPVKKERSR 358
Query: 402 ELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L V E + + G + +TE ++G LV T Y+QV++P LG++
Sbjct: 359 RLQRVIEDVGYRVHASYVGANALLVVTEEGSEGT-LVARTHNYMQVILPPGSANLGSTIE 417
Query: 460 VKI 462
KI
Sbjct: 418 AKI 420
>gi|148642905|ref|YP_001273418.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222445138|ref|ZP_03607653.1| hypothetical protein METSMIALI_00759 [Methanobrevibacter smithii
DSM 2375]
gi|148551922|gb|ABQ87050.1| 2-methylthioadenine synthetase, MiaB [Methanobrevibacter smithii
ATCC 35061]
gi|222434703|gb|EEE41868.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanobrevibacter
smithii DSM 2375]
Length = 426
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 240/430 (55%), Gaps = 23/430 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NT + ++ K +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 117 AK-----KPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKNILNNVDE 237
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G+P E+DEDF TV+L++ K +H+S++ R G ++ +K++P V+KKRSR L+ +
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIK 357
Query: 408 EAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
T E G V+ + E+ + G + T Y+ V+V G LG VKIT
Sbjct: 358 TEITEEENKELVGSVQNAVVVEVGSKG-GFIAKTDSYIPVIV--DGVNLGDFIKVKITDA 414
Query: 466 GRWSVFGEVI 475
+ G+V+
Sbjct: 415 TATYLKGDVV 424
>gi|261350294|ref|ZP_05975711.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
gi|288861078|gb|EFC93376.1| putative 2-methylthioadenine synthetase [Methanobrevibacter smithii
DSM 2374]
Length = 426
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 240/430 (55%), Gaps = 23/430 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+Y+ T+GC+ N++D++ M G L L D+ E AD+ ++NT + ++ K +
Sbjct: 3 VYIDTYGCTFNKADAQIMGGVLKENHIDLVDSPELADVIIVNTCYVKLPTENKVVYKIQQ 62
Query: 117 AK-----KPLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ K ++V+GC+ + D ++LE V S +G Q+++ +VV T G +R
Sbjct: 63 LQEKFPDKKVIVSGCMVE--IDPEKLEKVAPDCSWIGPHQLNKTADVVNGTYCGRVIREC 120
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
K + +PKV + I+ I GCLGACT+C T+ ARG L SY ++ +V + I
Sbjct: 121 GFSKDSKVGVPKVSDGSLIHIIQIAEGCLGACTFCCTRFARGPLNSYPIKDIVAEAKKAI 180
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
DG E+ L+++DT A+G D G L L+ VA L DG +R+GM +P IL ++ E
Sbjct: 181 DDGAVEIQLTAQDTAAFGYDSGEKLSDLIKE-VANL--DGEFRVRVGMMHPKDILNNVDE 237
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I + ++HP VY+F+H+PVQ+GS+ VLS M R +TL + +V +P + +A DII
Sbjct: 238 IIDAIKHPKVYNFIHLPVQTGSNKVLSEMRRGHTLDQYLDIVSKFKSEIPDLTLAVDIIV 297
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G+P E+DEDF TV+L++ K +H+S++ R G ++ +K++P V+KKRSR L+ +
Sbjct: 298 GYPTESDEDFQLTVDLLRNIKPSLIHLSKYQHRKGAVSSSLKEIPHEVMKKRSRNLSRIK 357
Query: 408 EAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
T E G V+ + E+ + G + T Y+ V+V G LG VKIT
Sbjct: 358 TEITEEENKELVGSVQNAVVVEVGSKG-GFIAKTDSYIPVIV--DGVNLGDFIKVKITDA 414
Query: 466 GRWSVFGEVI 475
+ G+V+
Sbjct: 415 TATYLKGDVV 424
>gi|389851459|ref|YP_006353693.1| methylthiotransferase [Pyrococcus sp. ST04]
gi|388248765|gb|AFK21618.1| putative methylthiotransferase [Pyrococcus sp. ST04]
Length = 405
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 207/353 (58%), Gaps = 18/353 (5%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLIN-------TQSAMDTLIAKCKSAKKPLVVAGCVPQG 130
MA L G+ L + +A++ ++N T+ + I + K ++V GC+P
Sbjct: 1 MAALLYLAGHELVSDENDAEVVVVNSCAVKDPTERKIARRIKELLDEGKKVIVTGCLPHV 60
Query: 131 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRKKLPALDLPKVRRNKFVE 187
+ D+ + +I+GV+ IDR+V+ VE L+G + V ++ L LDLP++
Sbjct: 61 NPDVIDERVSAILGVKSIDRIVQAVEYALRGEKLISVPDWKKRNLDKLDLPRLSPRGVHF 120
Query: 188 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 247
I+PI GCL ACTYC T+ ARG L SY+ E +V V+ I G KE+WLS+EDTG YG D
Sbjct: 121 IVPIAEGCLNACTYCATRLARGVLKSYSPEKVVEWVKWAIRQGYKEIWLSAEDTGCYGFD 180
Query: 248 IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS 307
IG NL LL+ I + +G +R+GM NP +++ L E+ E + +Y FLH+PVQS
Sbjct: 181 IGTNLAKLLDEITS---IEGEFRVRVGMMNPNHVMKFLDELIEAYKDEKIYKFLHLPVQS 237
Query: 308 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367
G + +L M R YT+ +F +V+ P + + TDII GFPGE++E F ++V LIK
Sbjct: 238 GDNEILRKMGRTYTVEEFEEIVNAFRREFPDLNLHTDIIVGFPGESEEAFQKSVELIKRI 297
Query: 368 KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FEAFTPYLG 415
+ +V++S++ PRPGT AA+ K++P +VK+RSR + + +E Y+G
Sbjct: 298 RPDKVNVSRYSPRPGTIAAKWKQLPGWIVKERSRIMHRIRLQISYEINQRYIG 350
>gi|408383124|ref|ZP_11180663.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
gi|407814232|gb|EKF84864.1| MiaB family RNA modification protein [Methanobacterium formicicum
DSM 3637]
Length = 424
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 236/418 (56%), Gaps = 23/418 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IYM+TFGC+ NQ+DS+ +AG L G + + EEAD+ ++NT + + I K
Sbjct: 3 IYMETFGCTFNQADSQIIAGLLEENGGKIVKSPEEADVIIMNTCYVKQPTEQKITNRIGK 62
Query: 114 CKSA--KKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 167
++ +K L++AGC+ D ++LE ++ +G ++I+ EVVE +KGH VR
Sbjct: 63 LQAQFPQKKLLIAGCMV--DIDPEKLEKMAPQAGWIGARRINSAPEVVEAVMKGHLVRET 120
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
LP+ R N +V IL I GCLG C+YC T+ ARG L SY + L +
Sbjct: 121 GHGDEFKTCLPRKRSNPWVHILQICEGCLGKCSYCCTRFARGGLQSYPISLLKSEAEQAV 180
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
ADG E+ L+++DT AYG+D G L L+N I + G +R+GM +P I L+
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDSGETLADLINEISS---IKGDFRIRVGMMHPKNIANDLES 237
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I ++ VY FLH+P+QSGSD +L MNR++++ ++ +V +P + +ATDII
Sbjct: 238 IITAFKNDKVYKFLHLPLQSGSDQILEDMNRDHSVEEYLEIVKHFQTEIPELSLATDIIV 297
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 405
G+P E ++DF T+N+I+E + +HIS+++ RPGT ++ + ++ +KKRSR L
Sbjct: 298 GYPTEGEDDFEGTMNVIREIRPDFLHISKYHHRPGTSSSLLPEIDHQTMKKRSRNLNDLK 357
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
V A + G ++I IT+ + G +L G T Y V+V +LGT V IT
Sbjct: 358 VEIATVNNKKLLGTHQKILITDKGSKGGYL-GRTSSYKTVVVEEA--ILGTFLDVNIT 412
>gi|242399008|ref|YP_002994432.1| 2-methylthioadenine synthetase [Thermococcus sibiricus MM 739]
gi|242265401|gb|ACS90083.1| Probable 2-methylthioadenine synthetase [Thermococcus sibiricus MM
739]
Length = 424
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 151/431 (35%), Positives = 236/431 (54%), Gaps = 26/431 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
++++T+GC+ N++D+E M L GY + D + AD ++NT + M I +
Sbjct: 3 VHIETYGCTRNKADAEMMEALLLRAGYEVVD-LDSADYVIMNTCAVKDPTEKHMARRIKE 61
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHE---VRLLHRK 170
+ K ++V GC+P + + I+GV+ IDR++ +E +G + V +
Sbjct: 62 LLDSGKRVIVTGCLPHVNPSAIDERVSGILGVKSIDRIIGAIELAERGEKLINVEGWRER 121
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
+ L++P+V + V ++PI+ GCL ACTYC T+ ARG L SY +V V+ +A G
Sbjct: 122 SIDKLEIPRVWKGGVVFVVPISEGCLNACTYCATRFARGVLKSYKPGLIVKWVKEAVAKG 181
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ LSSEDTG YG DIG NL LL+ I + +G +R+GM NP ++ L E+ E
Sbjct: 182 YKEIQLSSEDTGCYGFDIGTNLARLLDEITS---IEGEFRIRVGMMNPNNAVKVLDELIE 238
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH+PVQSG + +L M R YT+ +F +V + + + + TDII GFP
Sbjct: 239 AYKDNKIYKFLHLPVQSGDNEILKRMGRPYTVEEFEEIVREFRKHIKDLNLNTDIIVGFP 298
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSV--- 406
GE++E F TV LIK + ++++S+F PRPGT AARMK ++ VK+RSR L +
Sbjct: 299 GESEEAFQNTVELIKRVRPDKINVSRFSPRPGTVAARMKDQIVGWRVKERSRYLHRLRLS 358
Query: 407 --FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+E YLG E V +T + G T Y +++P +G VK+T
Sbjct: 359 ISYEINRRYLGREMEV----LTHGEGKKGGIEGRTMNYKDIILPEAP--VGEFVKVKVTK 412
Query: 465 VGRWSVFGEVI 475
+ GE++
Sbjct: 413 TTSTYLLGELV 423
>gi|170289680|ref|YP_001736496.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173760|gb|ACB06813.1| 2-methylthioadenine synthetase [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 432
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 232/429 (54%), Gaps = 30/429 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAM----DTLIAKCKS 116
Y++T+GCS N+SDS+ M L G ++ EAD+ ++NT + +I + +
Sbjct: 3 FYIETYGCSMNRSDSQIMEKLLEEAGLIRVNDPREADVIVLNTCNVKTPTEQRMIQRARE 62
Query: 117 AKK--PLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K PLVVAGC+ QG + LK+ V +V ++ID++VE V + G L +
Sbjct: 63 LSKYAPLVVAGCMAKSQGYK-LKDFSKV-LVAPREIDKIVEAVNSAIAGRRAEFLEWR-- 118
Query: 173 PALDLPKVRRN--KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
+D R+ + V I+PI GC+GACTYC T+ ARG L S+ +++ + G
Sbjct: 119 -FIDKSSYLRDPLELVGIIPIAEGCMGACTYCITRLARGGLTSFPKRNILRLAEHFLRKG 177
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
E+WL+SEDT AYGRD+G NL L+ + ++LP G +R+GM P L L E+
Sbjct: 178 AVELWLTSEDTAAYGRDMGENLANLIMDL-SDLP--GDFRIRVGMMTPSSALPILSELIG 234
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
R VY F H+PVQSGSD VL M R YT+ F ++VD + + + + IATDII GFP
Sbjct: 235 AYRSRKVYKFFHLPVQSGSDRVLEDMGRNYTVDQFLSMVDFIRKELSDVSIATDIIVGFP 294
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
E +EDF T+ +++ K V++S+F RPGT AA M+K+P A+V +RS+E+ + E
Sbjct: 295 TEDEEDFESTLAILERLKPDVVNVSKFGARPGTKAASMRKLPDAIVSRRSKEVNELVERI 354
Query: 411 TP-----YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
YLG E V ++E G G T Y V + LG LV+I
Sbjct: 355 KEEVNERYLGRELEV---LVSEKGEKGFQ--GRTNSYKPVALREVK--LGHFYLVEIVDF 407
Query: 466 GRWSVFGEV 474
+ GEV
Sbjct: 408 RANYLIGEV 416
>gi|333986908|ref|YP_004519515.1| MiaB family RNA modification protein [Methanobacterium sp. SWAN-1]
gi|333825052|gb|AEG17714.1| RNA modification enzyme, MiaB family [Methanobacterium sp. SWAN-1]
Length = 425
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 238/430 (55%), Gaps = 23/430 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTLIA 112
IY++TFGC+ NQ+DS+ MAG L + E+AD+ +INT Q A++ +
Sbjct: 3 IYIETFGCTFNQADSQIMAGLLKENQEKIVSKPEDADVIIINTCYVKHPTEQKAINRIHK 62
Query: 113 KCKS-AKKPLVVAGCVPQGSRDLKELE----GVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
K K L+++GC+ + D K+L+ S +G ++ E+V+ G VR +
Sbjct: 63 VQKQFPDKKLIISGCMVE--IDKKKLQKAAPNASWIGPHKVTSTPEIVKSVFNGENVRSI 120
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+ LPK+R N F+ I+ I GC G C+YC T+ ARG L SY E + V +
Sbjct: 121 GYGTDCKVCLPKIRSNPFIHIVQICEGCNGDCSYCCTRFARGSLQSYPTELIKREVEEAV 180
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
A+G E+ ++++DT AYG+D G +L L+N I +G +R+GM +P I++ +
Sbjct: 181 AEGCVEIQITAQDTAAYGKDTGTSLSKLINEITT---IEGDFKIRVGMMHPKSIMDDVDG 237
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I + ++ VY FLH+P+QSG+D VL MNR +T++DF+ VV E +P M I+TD+I
Sbjct: 238 IIKAFKNEKVYKFLHIPIQSGNDDVLRDMNRGHTVADFKDVVSKFKENIPEMSISTDVIV 297
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G+P E ++ F T+NL+ + + ++IS++ RPGT ++ M+++ +KKRS+ L +
Sbjct: 298 GYPTEDEDAFKDTLNLVADIRPDFINISKYGHRPGTRSSLMEEISHESMKKRSKSLNDLK 357
Query: 408 EA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
A + L M G + + IT + G + + Y QV+V + ++G+ + KI
Sbjct: 358 TAISYENNLKMLGSTQNVVITGKGSKGGY-ISRANSYKQVIVENA--VIGSFSEAKIIDA 414
Query: 466 GRWSVFGEVI 475
+ G +I
Sbjct: 415 KSTYLMGNLI 424
>gi|410720277|ref|ZP_11359634.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
gi|410601324|gb|EKQ55841.1| MiaB-like tRNA modifying enzyme [Methanobacterium sp. Maddingley
MBC34]
Length = 425
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 236/418 (56%), Gaps = 23/418 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IYM+TFGC+ NQ+DS+ MAG L G + + E+AD+ +INT + + I K
Sbjct: 3 IYMETFGCTFNQADSQIMAGLLEETGGKIVKSPEDADVIIINTCYVKQPTEQKITNRIGK 62
Query: 114 CKSA--KKPLVVAGCVPQGSRDLKELEGVSI----VGVQQIDRVVEVVEETLKGHEVRLL 167
++ +K L++AGC+ D ++LE ++ +G ++I+ EVVE + GH R
Sbjct: 63 LQAQFPQKKLIIAGCMV--DIDSEKLEKMAPQAGWIGARRINSAPEVVEAVMNGHLARET 120
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
LP+ R N V IL I GCLG C+YC T+ ARG L SY L +
Sbjct: 121 GHGDDIKTCLPRKRSNPMVHILQICEGCLGKCSYCCTRFARGGLQSYPTSLLKAEAEQAV 180
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
ADG E+ L+++DT AYG+D G +L L+N I + +G +RIGM +P I L+
Sbjct: 181 ADGCVEIQLTAQDTAAYGKDTGESLADLINEICS---IEGDFRIRIGMMHPKNIKGDLEA 237
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I ++ VY FLH+P+QSGS+ +LS MNR +++ ++ +V+ +P + +ATDII
Sbjct: 238 IITSFKNEKVYKFLHLPLQSGSNQILSDMNRGHSVEEYLEIVNHFQIEIPELSLATDIIL 297
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 405
G+P E + DF T+ +I+E + +HIS+++ RPGT ++ + ++ ++K+RSR+L
Sbjct: 298 GYPTENENDFQGTMEVIREIRPDFLHISKYHHRPGTRSSLLPEIDHQIMKRRSRKLNDLK 357
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
V A + G ++I IT+ + G +L G + Y V+V +LGT V+IT
Sbjct: 358 VNIATGNNQKLLGTHQKILITDKGSKGGYL-GRSNSYKTVVVNEA--LLGTYVDVEIT 412
>gi|348019711|gb|AEP43797.1| radical sam [Biston betularia]
Length = 188
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 2/184 (1%)
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+L LPKVR+N +EI+ IN GCL CTYCKTKHARG LGSY E +V R R +GV E
Sbjct: 7 SLLLPKVRKNPHIEIIAINTGCLNQCTYCKTKHARGELGSYPPEEIVERARLSFQEGVVE 66
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+WL+SEDTG YGRDIG +LP LL +V E+ P+G LR+GMTNPP+ILEHL+E+A ++
Sbjct: 67 IWLTSEDTGTYGRDIGTSLPELLWKLV-EVIPEGCR-LRLGMTNPPYILEHLEEVARIMH 124
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
HP VY FLHVPVQSGSD VLS M REY+ DF VVD L E VPG+ IATDIICGFP ET
Sbjct: 125 HPRVYKFLHVPVQSGSDQVLSDMKREYSRKDFEHVVDFLRERVPGITIATDIICGFPTET 184
Query: 354 DEDF 357
+ DF
Sbjct: 185 EADF 188
>gi|68445550|dbj|BAE03259.1| hypothetical conserved protein [unclutured Candidatus Nitrosocaldus
sp.]
Length = 454
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 223/400 (55%), Gaps = 13/400 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
++++ +GCS + SD E +AG + GY L N +EAD +I T + + ++ + K
Sbjct: 10 VWLEVYGCSSSLSDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKR 69
Query: 117 -AKKPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ KPLVVAGC+ + +R + SIVG IDRV + L G + LL +
Sbjct: 70 LSSKPLVVAGCMAKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQ 128
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ LPK+R N + ++ I GCL CT+C+T+ A+G L SY + +V +VR + G +E
Sbjct: 129 KVGLPKIRVNPVISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCRE 188
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
VWL+S D GAYGRDIG NL L+ A+ + D M+R+GM NP ++ L ++ E R
Sbjct: 189 VWLTSTDNGAYGRDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYR 245
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
V+ F+H+PVQSGSD VL M R + S F +V + IATD+I GFP E+
Sbjct: 246 DDKVFKFIHIPVQSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPSES 305
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFT 411
+EDF+ +++L+ E + V++S++ RPGT A+RM+++ V+ +RS+ + V ++
Sbjct: 306 EEDFDASIDLLLEVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDVVSRVCYS 365
Query: 412 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 451
L +G + + E+ G + G Y + + G
Sbjct: 366 RNLAWKGWEGTVLVDELTDAGGGVQGRNFAYKPIYLIRKG 405
>gi|118576134|ref|YP_875877.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
gi|118194655|gb|ABK77573.1| 2-methylthioadenine synthetase [Cenarchaeum symbiosum A]
Length = 421
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/426 (35%), Positives = 230/426 (53%), Gaps = 22/426 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
I+++ +GCS +Q+DSE ++G L G+ L + EE+D +I T + D ++ + K
Sbjct: 4 IWIEAYGCSASQADSEMISGLLVNGGHTLAASPEESDAGVIVTCAVKDATANRMVHRIKM 63
Query: 117 -AKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+PLVVAGC+P+ + G +++G I R V VVE L+G L L
Sbjct: 64 LGGRPLVVAGCLPKAEPGTMARISPGAALMGPNSIGRTVPVVEAALRGERRIELDDTDLT 123
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
LPKVR N+ V I+ I GCL CT+C+TK A+G LGSY + +V +VR + DG E
Sbjct: 124 KTGLPKVRLNEAVGIVEIASGCLSECTFCQTKLAKGDLGSYRIGDIVRQVRAEVDDGCSE 183
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
VWL+S D G YG DI +LP LL+A++ +P G +R+GM NP ++ + +A+ +
Sbjct: 184 VWLTSTDNGCYGFDISEDLPGLLDAVIT-IP--GRFRVRVGMMNPMYMPRIREGLAKSFQ 240
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+Y FLH+PVQSGS +L M R T F G I+TD+I GFPGET
Sbjct: 241 SDKLYRFLHIPVQSGSGRILGEMGRGRTAGIFADAARRFRSEFGGFTISTDVIVGFPGET 300
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-----FE 408
D D+ T LI+E + V++S++ RPGT AA ++V VK+RS+ + + +
Sbjct: 301 DGDYESTEALIEEVRPDTVNLSRYSARPGTEAAGREQVDVQTVKRRSKRMYELSCRISLD 360
Query: 409 AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
++G +G V +E GI G + Y V + G +LG + V+IT
Sbjct: 361 RNKEWVGWKGDV---LFSEATEGGIR--GRNREYKPVY--AEGAVLGETRQVRITKATNH 413
Query: 469 SVFGEV 474
+ GE+
Sbjct: 414 CLVGEI 419
>gi|444728295|gb|ELW68754.1| CDK5 regulatory subunit-associated protein 1-like 1 [Tupaia
chinensis]
Length = 494
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/166 (66%), Positives = 141/166 (84%), Gaps = 2/166 (1%)
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
GV E+WL+SEDTGAYGRD+G +LP LL +VA +P +G+ MLR+GMTNPP+ILEHL+E+A
Sbjct: 233 GVCEIWLTSEDTGAYGRDVGTDLPTLLWRLVAVIP-EGA-MLRLGMTNPPYILEHLEEMA 290
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VVD L E VPG+ IATDIICGF
Sbjct: 291 KILNHPRVYAFLHIPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGF 350
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
PGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V
Sbjct: 351 PGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQV 396
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRLHDNHLSKTGSLSPKIPGTET 60
++DIED+++ F V PK K + H S S S IPG +
Sbjct: 10 LDDIEDIVSQEDSKPRDRHF----ARKHVVPKVRKRNAQKHVQEESSPPSDS-TIPGIQK 64
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT 103
I+++T+GCSHN SD EYMAGQL+A+GY +T+N+ +AD+WL+N+
Sbjct: 65 IWIRTWGCSHNNSDGEYMAGQLAAYGYQMTENASDADLWLLNS 107
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 193 VGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ CL ACTYCKTKHARG+L SY ++ LV R +
Sbjct: 122 IKCLNACTYCKTKHARGNLASYPIDELVDRAK 153
>gi|325959667|ref|YP_004291133.1| MiaB family RNA modification protein [Methanobacterium sp. AL-21]
gi|325331099|gb|ADZ10161.1| RNA modification enzyme, MiaB family [Methanobacterium sp. AL-21]
Length = 425
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 226/404 (55%), Gaps = 21/404 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y+ T GC+ NQ+DS+ MAG L L D E+AD ++NT + + T I K
Sbjct: 3 VYIDTVGCTFNQADSQIMAGILKENRVELVDTPEDADTIIMNTCYVKHPTEQKVLTKIKK 62
Query: 114 CKSA--KKPLVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
+ + L+++GC+ P+ D S +G +I E+V +G+ VR
Sbjct: 63 MQEQYPESKLLISGCMVEIDPEKLADAAP--EASWIGPHKIKSTYEIVNSVHEGNIVRET 120
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
P + LPKVR N + I+ I GC G CTYC T+ ARG + SY+ E + +
Sbjct: 121 GFSSEPKVGLPKVRTNPIIHIIQICEGCDGFCTYCCTRFARGRIQSYSSEMIKKEAEQAV 180
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+G KE+ L+++DT AYGRD G +L L+ ++++++ DG LR+GM +P I+ +
Sbjct: 181 TEGCKEIQLTAQDTAAYGRDTGESLADLI-SMISDI--DGKFKLRVGMMHPKSIMNQVDP 237
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
I + + Y FLH+P+QSGSD VL MNR +T+ +++T+V E +P + I+TDII
Sbjct: 238 IIKAFKKGKCYKFLHLPIQSGSDTVLHDMNRCHTVDEYKTIVSRFREEIPDISISTDIIV 297
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G+P ETD+DF T+NLIKE + +HIS++ RPGT +++++++ +K+RS+ L +
Sbjct: 298 GYPTETDDDFKATLNLIKELEPDFLHISKYMHRPGTTSSQLEEIEHETMKERSKALNDLK 357
Query: 408 E--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 449
A M G + I +T G + VG + GY V++ +
Sbjct: 358 MEIAMKKNSMMIGSKQTILVTNKGRKGGY-VGRSDGYKTVIIEA 400
>gi|41614804|ref|NP_963302.1| hypothetical protein NEQ008 [Nanoarchaeum equitans Kin4-M]
gi|40068528|gb|AAR38863.1| NEQ008 [Nanoarchaeum equitans Kin4-M]
Length = 413
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 208/378 (55%), Gaps = 33/378 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN-------TQSAMDTLIAK 113
+Y +++GC+ N+ D+ YM Q+ T+N EEAD+ +IN T++ + I +
Sbjct: 3 VYFESYGCTLNKRDTLYMQAQIEN----TTNNLEEADVVVINSCIVKQPTETKILYRINQ 58
Query: 114 CKSAKKPLVVAGC-VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K K +V+ GC V + KEL+ +S+V + DR+ E +E T KG V L +KK+
Sbjct: 59 LKKMGKKIVLTGCMVSEPYLKYKELQDISLVNIYNQDRIKEAIERTYKGERVLFLEKKKI 118
Query: 173 P---ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
A L K R I+ I GCL CTYC TK AR SY + + + +
Sbjct: 119 YKEFARPLSKAR-----AIIQIQEGCLWRCTYCGTKLARSMFYSYPPKLIKREIEEKLKQ 173
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G+K +L+ DT YG+DI +L LL ++ +G +R+GM NP F LE + E+
Sbjct: 174 GIKIFYLTGPDTATYGKDINYSLADLLKDLIE---IEGDFYIRVGMANPTFFLEQIDELI 230
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
+V + ++ F H+PVQSGS+ VL MNR YT+ +++ ++ L + P TDII G+
Sbjct: 231 DVFKSNKIFKFFHLPVQSGSNKVLKDMNRPYTIEEYKELIYKLRKHFPLATYVTDIIVGY 290
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
P ET+EDF QT+ L++E KF ++IS+F+ RPGT A +K++ +V R + L VF
Sbjct: 291 PTETEEDFEQTLELVREIKFDGINISRFWRRPGTIAWNLKQLDPEIVTNRVKRLKEVF-- 348
Query: 410 FTPYLGMEGRVER--IWI 425
++G ER +W+
Sbjct: 349 ------LQGAYERNKLWL 360
>gi|408403887|ref|YP_006861870.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408364483|gb|AFU58213.1| hypothetical protein Ngar_c12730 [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 435
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/355 (37%), Positives = 210/355 (59%), Gaps = 15/355 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
++++ +GCS + +DSE ++G L GY + E + LI T S DT ++++ K+
Sbjct: 9 VWVEAYGCSASMADSEMISGLLKGAGYEIASKQSEGALNLIVTCSVKDTTEHRMVSRIKA 68
Query: 117 ---AKKPLVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
+ KPLVVAGC+P+ R ++ L + S++G I++ V+VV L G + L
Sbjct: 69 MSKSGKPLVVAGCLPKADRAKVESLNSLASLLGPHSIEKAVDVVGSALAGGRLVALEDSV 128
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ +++ I G
Sbjct: 129 ADKVNIPRVRLNPMVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKADINAGC 188
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KEVWL+S D G YG+D+G +L LL A + +G +R+GM NP ++ E L + +V
Sbjct: 189 KEVWLASTDNGCYGKDMGTDLVELLRACCS---IEGDFKIRLGMMNPMYVPEMLNRMVDV 245
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ ++ FLH+PV+SGSD VL M R +T F V +P M I+TD+I GFP
Sbjct: 246 FYENEKLFRFLHIPVESGSDRVLRKMKRGHTTKTFLDAVQAFRSKIPEMTISTDVIVGFP 305
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSREL 403
ET++DF +T++L++ + V+IS++ RPGT AA+ K +V S V K+RS L
Sbjct: 306 SETEDDFKETLDLVERAEPDIVNISRYSARPGTEAAKWKGMRVSSQVAKERSERL 360
>gi|188529339|gb|ACD62415.1| CDKAL1-like protein [Drosophila silvestris]
Length = 248
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 105/194 (54%), Positives = 148/194 (76%)
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
LEHL+E+A+VL+HP VY+FLHVPVQSGSD+VL M REY DF VVD L VPG+ I
Sbjct: 1 LEHLEEVAKVLQHPRVYAFLHVPVQSGSDSVLGEMKREYCRKDFEHVVDLLRSRVPGLTI 60
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
ATDIICGFP ET++DF +T+ L ++Y+FP + I+QF+PRPGTPAA+++++P+ +VKKR++
Sbjct: 61 ATDIICGFPTETEQDFEETMTLCEKYQFPILFINQFFPRPGTPAAKIERIPANLVKKRTK 120
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
LT +F ++ PY EG++ + +TEI+ D +H VGH K Y QVL+P N+LGT V+
Sbjct: 121 RLTDLFYSYEPYAEREGQLYTVLVTEISHDKLHYVGHNKSYEQVLLPMRKNLLGTRVRVR 180
Query: 462 ITSVGRWSVFGEVI 475
ITS ++S+ GE++
Sbjct: 181 ITSSSKFSMMGEIL 194
>gi|388254688|gb|AFK24805.1| MiaB-like tRNA modifying enzyme [uncultured archaeon]
Length = 450
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 208/358 (58%), Gaps = 15/358 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
++++ +GCS + +DSE ++G L GY + N E + LI T S DT ++++ K+
Sbjct: 27 VWIEAYGCSASMADSEMISGLLKGSGYEIASNQSEGALNLIVTCSVKDTTEHRMVSRIKA 86
Query: 117 ---AKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
+ KPLV+AGC+P+ R E S++G I+ VV L G + L
Sbjct: 87 LSRSGKPLVIAGCLPKADRAKVEALNSSASLLGPHSIESAPAVVGSALAGSPMVALEDSA 146
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
+++P+VR N V I+ I GC+ CT+C+TK A+G L SY + ++ ++++ + G
Sbjct: 147 SDKINIPRVRLNPTVSIVEIASGCMSECTFCQTKIAKGWLRSYRIGDIMRQIKSDVEAGC 206
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+WL+S D G YG+D+G +L LLNA + +G M+R+GM NP ++ E L +
Sbjct: 207 KEIWLASTDNGCYGKDMGTDLVELLNACSS---IEGDFMIRLGMMNPMYMPEMLDRMVNT 263
Query: 292 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ + ++ FLH+PV+SGSD +L M R ++ F V T +P M I+TDII GFP
Sbjct: 264 FQENDKLFKFLHIPVESGSDRMLRKMKRGHSAKTFLDAVKTFRSKIPEMTISTDIIVGFP 323
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK--KVPSAVVKKRSRELTSV 406
ET+ DF +T+NL++ + V+IS++ RPGT AA+ K +V S V K RS L ++
Sbjct: 324 SETESDFEETLNLVERAEPDIVNISRYGARPGTEAAKWKGMRVSSQVAKDRSERLHAL 381
>gi|288560943|ref|YP_003424429.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
gi|288543653|gb|ADC47537.1| MiaB-like tRNA modifying enzyme [Methanobrevibacter ruminantium M1]
Length = 428
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 230/402 (57%), Gaps = 21/402 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
++++T+GC+ NQ+DSE MAG L+ L EEAD ++NT +I + K+
Sbjct: 6 VFIETYGCTFNQADSEIMAGILNENNIGLVSTEEEADAIIVNTCYVKLPTESKVINRIKN 65
Query: 117 AKK-----PLVVAGCVPQGSRDLKELEGV----SIVGVQQIDRVVEVVEETLKGHEVRLL 167
+K ++V GC+ + D K+LE + S +G Q+++ +VV+ T+ G VR
Sbjct: 66 LQKQYPDKKIIVGGCMVE--VDPKKLEAIGPNCSWIGPHQLNKTADVVKSTIGGEIVREF 123
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
P + +PK+R++ ++ ++ I GCLGACTYC T+ ARGHL SY ++ +V R I
Sbjct: 124 GFSDEPKVCVPKIRKDPYIHVIQICEGCLGACTYCCTRFARGHLNSYPIKDIVEEARLAI 183
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
DG E+ L+++DT A+G+D G L L+ VA L DG +R+GM +P I L
Sbjct: 184 EDGCVEIELTAQDTSAFGKDTGEKLSDLIKE-VASL--DGDFRVRVGMMHPRNIGNDLDN 240
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ E + VY F+H+P+QSGSD VL M R +T+ D++ +V + + +P + IATDII
Sbjct: 241 LIEAFKMEKVYDFIHLPIQSGSDKVLREMGRNHTVDDYKNIVYSFKQAIPDITIATDIII 300
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV- 406
G+P ET+EDF +T LI+E KF +H+S++ R G ++ + +P +K+RS+ L+ +
Sbjct: 301 GYPTETEEDFMKTAELIREIKFNLIHLSKYQHREGAISSSLDNIPFDDMKRRSKYLSEIK 360
Query: 407 FEAFTPYLG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
FE ++ R + E + G + T Y+ V+V
Sbjct: 361 FEMLEEENKFLQDREMDALVVEKGSKG-GFIAKTNSYIPVVV 401
>gi|193084232|gb|ACF09895.1| MiaB-like tRNA modifying enzyme [uncultured marine crenarchaeote
AD1000-23-H12]
Length = 422
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/358 (35%), Positives = 208/358 (58%), Gaps = 12/358 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAK------- 113
++++++GCS N +D+E ++G LS GY + +N ++D+ +I T + D K
Sbjct: 3 VHVESYGCSANIADAEMISGLLSQKGYNVLNNDPDSDLNVIVTCTVKDPTFNKMVKRIKS 62
Query: 114 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
S KPL++AGC+P+ D L+ + S++ + V+ + L G + + K+
Sbjct: 63 LSSTGKPLIIAGCMPKTELDKILQINDQASLLDPGSVHLAVDAAKAALAGEKFESISSKR 122
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
+ LP++R N V I ++ GCL CT+C+ K ARG L SY +V + + DG
Sbjct: 123 SNKVLLPRLRSNPVVHIAEVSQGCLSKCTFCQVKFARGGLVSYRPLDIVREIEQAVIDGC 182
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
+E+WL+S+D G YG+DI +LP LLN I+ ++ DG M+R+GM NP + E + ++
Sbjct: 183 REIWLTSQDIGCYGKDIKTSLPELLN-IICDI--DGDFMVRVGMMNPMHLDEIIDDLITS 239
Query: 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
P ++ FLH+PVQSGSD +L M R ++++DF V P + ++TDII GFP
Sbjct: 240 YMDPKIFKFLHIPVQSGSDEILKLMKRMHSVNDFELTVKKFRNAFPNISLSTDIIVGFPD 299
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
ETD F +T++L++ F V+IS+F RPGT A +P +VK+RS+ + +V ++
Sbjct: 300 ETDLQFQETLDLVRRINFDTVNISRFGSRPGTEAYSKPILPHKIVKERSKLMHTVAKS 357
>gi|330835295|ref|YP_004410023.1| RNA modification protein [Metallosphaera cuprina Ar-4]
gi|329567434|gb|AEB95539.1| RNA modification protein [Metallosphaera cuprina Ar-4]
Length = 418
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/428 (34%), Positives = 231/428 (53%), Gaps = 25/428 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y +T+GC+ N+ D+ M L + + + E AD+ +INT + M I +
Sbjct: 3 VYFETYGCALNKGDTYSMMSLLRERNHEIVETLEGADVVVINTCAVRMETEEKMKKRIRE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K LV+AGC+ L S++G Q I +V+VVE +E + K
Sbjct: 63 LSKTGKKLVIAGCLTGAQPGLVSSLSPSSSMIGPQSISDIVKVVE----SNERVISLDSK 118
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P++ LP+V + + ++PI GC G C +C TK AR +L SY + ++V V+ +I+ G
Sbjct: 119 TPSI-LPRVF-DGLISVIPIEDGCAGNCNFCITKLARRNLRSYPLRNIVETVKRMISQGA 176
Query: 232 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ L+ +DT YG D+G V LP ++ VA L +G M+R+GM P + HL I
Sbjct: 177 KEIELTGQDTAVYGLDMGGKVTLPDVVKE-VASL--EGDFMIRVGMMTPEMAMRHLDSIL 233
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
E +P VY F H+PVQSG+D VL MNR+YT+ +FR +V + + + I TDII G
Sbjct: 234 EAWENPKVYKFFHIPVQSGNDKVLREMNRKYTVDEFRAIVKEIRKKFRLVNITTDIIVGH 293
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
PGE D F T+NL+KE +F ++HI+ + RP T ++ + +VP + K+R + S++E
Sbjct: 294 PGEDDSAFEDTLNLMKELRFERIHIAMYSIRPNTRSSMLAQVPGPIKKERLKRAVSLYEE 353
Query: 410 FTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
+ + E GR R+ E D ++G T Y+ V++ +LG VKI
Sbjct: 354 LSREVHKEYLGRQMRVLALERGKDDT-IIGRTINYIPVILSDA--VLGNWYDVKIVDSSF 410
Query: 468 WSVFGEVI 475
+ + GE++
Sbjct: 411 FDLRGEIV 418
>gi|146303440|ref|YP_001190756.1| RNA modification protein [Metallosphaera sedula DSM 5348]
gi|145701690|gb|ABP94832.1| RNA modification enzyme, MiaB family [Metallosphaera sedula DSM
5348]
Length = 418
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/427 (34%), Positives = 226/427 (52%), Gaps = 23/427 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY +T+GC+ N+ D+ M L + + ++ E+AD+ +INT + M I +
Sbjct: 3 IYFETYGCALNKGDTYSMMTLLKGRNHEIVNSEEQADVLVINTCAVRMETEEKMKKRILE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K LVVAGC+ L S++G Q I VV+ VE + LH +
Sbjct: 63 LSKTGKKLVVAGCLAGAEPGLVMSLAPQSSLIGPQSIGDVVKAVESR---ERIVSLH-GE 118
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
LP++ LP V + ++PI GC G+C +C TK AR L SY +V R I G
Sbjct: 119 LPSV-LPSVFEG-LISVIPIADGCAGSCNFCITKLARKELRSYPPRMIVETARKAIEKGA 176
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ L+ +DT AYG D+G + I L +V E+ +G M+R+GM P + L ++ +
Sbjct: 177 KEIELTGQDTAAYGLDLGRD--IRLADLVGEVSSLEGDFMVRVGMMTPELAMRQLDDLLD 234
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+P VY F H+PVQSG+D VL AMNR+YTL +FR +V + + P + I TDII G P
Sbjct: 235 AWDNPKVYKFFHLPVQSGNDQVLRAMNRKYTLDEFREIVREIRKRFPLVNITTDIIVGHP 294
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
GE + F T+NL+KE +F ++HI+ + RP T +A M +VP + K+R + +++E
Sbjct: 295 GEDENAFEDTLNLMKELRFERIHIAMYSLRPNTRSAMMTQVPGPIKKERLKRAVTLYEEL 354
Query: 411 TPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
+ + E GR ++ + E D +G T Y+ V+V LG +IT +
Sbjct: 355 SREIHREYVGRKMKVLVLENGKDNTK-IGRTLNYIPVIVKDAD--LGKWYEAEITDSSFF 411
Query: 469 SVFGEVI 475
+ G ++
Sbjct: 412 DLRGSIV 418
>gi|84489190|ref|YP_447422.1| 2-methylthioadenine synthetase [Methanosphaera stadtmanae DSM 3091]
gi|84372509|gb|ABC56779.1| predicted 2-methylthioadenine synthetase [Methanosphaera stadtmanae
DSM 3091]
Length = 424
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 145/432 (33%), Positives = 234/432 (54%), Gaps = 27/432 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY++T GC+ NQ+D++ MA L A Y + + EEAD+ ++NT + M T I K
Sbjct: 3 IYLETHGCTFNQADTDIMANIL-AKKYDIVYDVEEADVIILNTCYVKLPTEQKMITKIRK 61
Query: 114 CKSA--KKPLVVAGC-VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 169
K+ K L++ GC V + L++ G +G ++D+V EVVE+ + G V +
Sbjct: 62 YKTEFPDKKLIIGGCMVEVDDKRLEKFAGDDCWIGPHKLDKVDEVVEKAINGEVVHEYGK 121
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ K V IL I GC G CT+C T+ ARG L SY ++ +V + +
Sbjct: 122 TRAIKAGKGKKNSESLVHILQICEGCNGQCTFCCTRIARGFLISYPIDVIVEEAKDAVEH 181
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G KE+ ++++DT +G D G + LLN + A +G +R+GM NP I L E+
Sbjct: 182 GCKELQVTAQDTACFGMDTGESFADLLNKLGA---IEGDFRIRVGMMNPQSIKNQLHEVI 238
Query: 290 EVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+ ++ +++F+H+P+QSGS VL MNR++TL +++ +++ + +P M +ATDII G
Sbjct: 239 DAFKNNDKIFNFVHLPIQSGSPKVLKEMNRKHTLDEYKYILNEFRKEIPQMSLATDIIVG 298
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV-- 406
+P ET+EDFNQT+ L+KE K VHIS++ RPG + +K++ ++K RS + V
Sbjct: 299 YPTETEEDFNQTLELLKEIKPDIVHISKYMHRPGAKSNHLKEIDHNIMKNRSHRVNQVKT 358
Query: 407 ---FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
E Y E ++ + IT + G + VG+T Y V+V +G+ VKI
Sbjct: 359 EVMLEKNKEY---ENTIQNVLITSKGSSGGY-VGYTDSYKNVIVDEAE--IGSFMDVKII 412
Query: 464 SVGRWSVFGEVI 475
R + + I
Sbjct: 413 EGKRTYLLAQRI 424
>gi|374857474|dbj|BAL60326.1| hypothetical conserved protein, partial [uncultured crenarchaeote]
Length = 434
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 214/388 (55%), Gaps = 13/388 (3%)
Query: 73 SDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS-AKKPLVVAGCV 127
SD E +AG + GY L N +EAD +I T + + ++ + K + KPLVVAGC+
Sbjct: 2 SDGEIIAGIIVGKGYELASNFDEADASIIVTCVVKDATANRMVERIKRLSSKPLVVAGCM 61
Query: 128 PQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKF 185
+ +R + SIVG IDRV + L G + LL + + LPK+R N
Sbjct: 62 AKAEPNRIRRFNPRASIVGPNAIDRVDTALASALDGKGIVLLD-GSMQKVGLPKIRVNPV 120
Query: 186 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG 245
+ ++ I GCL CT+C+T+ A+G L SY + +V +VR + G +EVWL+S D GAYG
Sbjct: 121 ISMVQIGSGCLSECTFCETRIAKGRLTSYRIGDIVRQVREDVEQGCREVWLTSTDNGAYG 180
Query: 246 RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPV 305
RDIG NL L+ A+ + D M+R+GM NP ++ L ++ E R V+ F+H+PV
Sbjct: 181 RDIGTNLVELIKAVCS---IDAEFMIRVGMMNPQYLPLMLDDLIEAYRDDKVFKFIHIPV 237
Query: 306 QSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365
QSGSD VL M R + S F +V + IATD+I GFP E++EDF+ +++L+
Sbjct: 238 QSGSDRVLRLMRRGHRASTFIDMVKRFRRELKLCTIATDMIVGFPSESEEDFDASIDLLL 297
Query: 366 EYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERI 423
E + V++S++ RPGT A+RM+++ V+ +RS+ + V ++ L +G +
Sbjct: 298 EVEPDIVNVSKYSARPGTEASRMEQLSKQVINERSKVMHDVVSRVCYSRNLAWKGWEGTV 357
Query: 424 WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+ E+ G + G Y + + G
Sbjct: 358 LVDELTDAGGGVQGRNFAYKPIYLIRKG 385
>gi|304314978|ref|YP_003850125.1| 2-methylthioadenine synthetase [Methanothermobacter marburgensis
str. Marburg]
gi|302588437|gb|ADL58812.1| predicted 2-methylthioadenine synthetase [Methanothermobacter
marburgensis str. Marburg]
Length = 427
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 143/401 (35%), Positives = 220/401 (54%), Gaps = 22/401 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+Y++TFGC+ NQ+DSE MAG LS G +LT +EAD+ ++NT +I + K
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLSEAGASLT-GIDEADVIILNTCYVKHPTEHKVINRIKR 64
Query: 117 AK-----KPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 167
+ K LVVAGC+ + D ++LE +S +G Q+ R EVV +G R+
Sbjct: 65 IREMYPDKGLVVAGCMVEI--DPQKLESISGDASWLGPHQLMRTAEVVGAAYRGDVKRIT 122
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+ +P+VR N + I+ I GC G+C+YC T+ ARG + SY + +V R I
Sbjct: 123 GFTSDVKVGVPRVRSNPLIHIIQICEGCSGSCSYCCTRFARGSIQSYPSDIIVQEAREAI 182
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
G +E+ L+++DT AYG D G L L+ I E+P G +R+GM +P +L L
Sbjct: 183 EAGCREIQLTAQDTAAYGSDTGERLSDLIREI-TEIP--GDFRVRVGMMHPASVLRDLDG 239
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ E R VYSFLH+PVQSGSD VL M R +T+ DFR +VD +P + IATDII
Sbjct: 240 LVEAFRSEKVYSFLHLPVQSGSDRVLRDMGRGHTVDDFRMIVDRFRSRIPEISIATDIIV 299
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G+P E ++DF T L++E + +H+S++ RP ++ + ++ +++RS+ + +
Sbjct: 300 GYPTEGEDDFLDTCRLLEEVRPGFIHLSKYRHRPRAFSSSLDEIDFRELRRRSKAVEELK 359
Query: 408 EAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
T + G + I I E G +G T Y+ V+
Sbjct: 360 GRITEEENRRLVGTTQNILIVERGRKG-GFIGRTDSYIPVV 399
>gi|284162243|ref|YP_003400866.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
gi|284012240|gb|ADB58193.1| MiaB-like tRNA modifying enzyme [Archaeoglobus profundus DSM 5631]
Length = 423
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/413 (36%), Positives = 238/413 (57%), Gaps = 33/413 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKS 116
+Y++T+GC+ NQSDS+ M G L A + L D+++EAD+ +IN+ +D ++ + +S
Sbjct: 4 VYIETYGCTMNQSDSDIMRGIL-AKNFELVDSADEADVVVINSCGVVDFTERKILKRAES 62
Query: 117 AK---KPLVVAGCVPQ-GSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
K K +V+AGC+P+ ++ E+ VS V ID VV+ V LKG + L+ R
Sbjct: 63 LKRQGKKVVMAGCLPRIATKKCLEVSDALVSPDNVHVIDLVVKSV---LKGEKPILIDRT 119
Query: 171 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+ ++ V+R + I+ I GC G C++C T+ ARG L S+ ES+V VR +
Sbjct: 120 DVDKSEISCVKRRLRENAIAIVSIAEGCTGRCSFCATRFARGRLRSFKFESIVDEVRKCV 179
Query: 228 ADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+G KE+ ++S+DTGAYG D G LP LL AI +E+ +G +R+GM NP +E L
Sbjct: 180 ENGFKEIQITSQDTGAYGLDKGRYMLPDLLRAI-SEI--EGDFRVRVGMMNPRHAVEMLD 236
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
++ +Y F+H+PVQSG + VL MNR++++ DF VV + ++TD+I
Sbjct: 237 DLLNAFESEKMYKFIHIPVQSGDENVLRDMNRDHSVEDFIEVVKAFRRRFDDVMVSTDVI 296
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
GFP ET+E F +T LIK + V+I++F RP TPA ++K++ +VK+RSR+LT +
Sbjct: 297 VGFPTETEEAFWRTYELIKNVEPDIVNITRFSKRPFTPAYKLKEIHGWIVKERSRKLTEL 356
Query: 407 FEAFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
+ +G++ G+ R+ IT+ +G L Y V+V GN+
Sbjct: 357 ARS----IGLKRNRRFIGKRLRVLITKNGKNGTKL-ARADSYRPVVVRE-GNI 403
>gi|70606747|ref|YP_255617.1| hypothetical protein Saci_0962 [Sulfolobus acidocaldarius DSM 639]
gi|68567395|gb|AAY80324.1| universally conserved protein [Sulfolobus acidocaldarius DSM 639]
Length = 421
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 150/428 (35%), Positives = 228/428 (53%), Gaps = 23/428 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++T+GC+ N+ DS M L G+ + DN ++A+I +INT + M I +
Sbjct: 3 VYIETYGCALNKGDSYIMMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKE 62
Query: 114 CKSAK-KPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
K K LVVAGC+ + S++G Q + ++V+VVE + K +V L K
Sbjct: 63 LKKYNDKRLVVAGCLASAEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDK 121
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L PKV K + ILPI GC G C +C TK AR L SY +V VR + G
Sbjct: 122 PLIT---PKVFDGK-IAILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKG 177
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIA 289
E+ LS +DT AYG D+G I L+ +V ++ +G M+RIGM P + + I
Sbjct: 178 AVEIELSGQDTAAYGLDLG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGII 234
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
EVLR VY F+H+PVQSG D VL MNR+YT+ +++ +V + + VP + I TDII G
Sbjct: 235 EVLRETKVYKFIHLPVQSGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGH 294
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE- 408
PGE + F T+ L+++ KF ++H++ + RP T +A MK+VP V K+R + ++E
Sbjct: 295 PGEDENAFRNTLELMRDIKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEE 354
Query: 409 -AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
A+ + + + TE G ++G T Y+ V++ LG V+I
Sbjct: 355 LAYEIHSDYLNSIASVITTEYGRKG-SVIGRTLNYIPVVIRQNVE-LGKRINVRINEASF 412
Query: 468 WSVFGEVI 475
+ + GE I
Sbjct: 413 YDLRGEPI 420
>gi|15678846|ref|NP_275963.1| hypothetical protein MTH826 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|6226399|sp|O26914.1|AMTAB_METTH RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|2621916|gb|AAB85324.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 424
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 222/407 (54%), Gaps = 23/407 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+Y++TFGC+ NQ+DSE MAG L G LT ++AD+ +INT +I + K
Sbjct: 6 VYIETFGCTFNQADSEIMAGVLREEGAVLT-GIDDADVIIINTCYVKHPTEHKVINRIKK 64
Query: 117 AK-----KPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLL 167
+ K LVVAGC+ + D +LE +S +G Q+ R + V G R+
Sbjct: 65 IQETYPEKGLVVAGCMVEI--DPSKLEAISGDASWLGPHQLRRAPQAVRAASNGLVERIT 122
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+ +P+VR N + I+PI GC G+C+YC T+ ARG + SY + ++ R +
Sbjct: 123 GFTSDVKVKVPRVRSNPLIHIIPICEGCNGSCSYCCTRFARGRIQSYPSDLIISEAREAV 182
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
A G +E+ L+++DT AYG D G L ++ I + +P G+ +R+GM +P +L L
Sbjct: 183 ASGCREIQLTAQDTAAYGVDTGEKLSDIIKGI-SGIP--GNFRIRVGMMHPASVLRDLDG 239
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ E + VYSFLH+PVQSGSD+VL+ M R +T+ +FR +V+ +P + IATDII
Sbjct: 240 LVEAFKSEKVYSFLHLPVQSGSDSVLADMERGHTVDEFRMIVERFRSEIPDISIATDIIV 299
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G+P E EDF T +L++E K +H+S++ RP ++ + ++ +++RSR L +
Sbjct: 300 GYPTEEREDFMDTCSLLEEVKPSFIHLSKYRHRPRARSSSLDEIDFRELRRRSRALEELK 359
Query: 408 EAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
T + G + I + E G +G T Y+ V V TG
Sbjct: 360 MRITEEENRRLVGSFQEILVVERGRKG-GFIGRTGSYIPV-VTETGE 404
>gi|336476780|ref|YP_004615921.1| MiaB-like tRNA modifying protein [Methanosalsum zhilinae DSM 4017]
gi|335930161|gb|AEH60702.1| MiaB-like tRNA modifying enzyme [Methanosalsum zhilinae DSM 4017]
Length = 431
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 205/363 (56%), Gaps = 18/363 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------IAK 113
+++ +GCS NQ+ +E MA +++ +G+ L D+ A +INT + T I++
Sbjct: 3 VHILNYGCSANQASAEIMAAKINEYGHELVDDESSAQAVVINTCTVKSTTEKKILHRISE 62
Query: 114 CKSAKKPLVVAGCVPQ-GSRDLKELEG----VSIVGVQQIDRVVEVVEETLKG---HEVR 165
++ LVV GC+PQ +D+ E + + + +I ++ ++ + KG +
Sbjct: 63 IGKTERELVVTGCMPQVQMKDIIEANSQAHVLGVNSITEIGNILNKIQNSNKGSVKDRIE 122
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
LL L++ ++R N + I I+ GC C+YC + ARG L S+ + +V V+
Sbjct: 123 LLSSVPEGFLNVDRIRHNPNIHICQISQGCNHRCSYCIVRDARGPLTSFDPKDIVDDVKK 182
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
I++G +EVW++S+D G YG DI +LP LLN ++ ++P +R+GM NP +L L
Sbjct: 183 AISEGCREVWITSQDNGQYGADIQSSLPELLN-MLCKIPEHFK--IRVGMMNPFSVLPIL 239
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
++ + + +Y LH+P+QS S+ LSAMNR +++ D ++ + + TDI
Sbjct: 240 DDLIKAFENDKIYKLLHLPIQSASENTLSAMNRNHSMKDVEDIISRFRYRFGDLTLFTDI 299
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
I GFP ETD+DFN++V IKEY +++IS++ PRPGTPA + + S +V KRS+ L
Sbjct: 300 IVGFPYETDDDFNKSVEWIKEYCPDKINISRYTPRPGTPAFNYRNIDSRIVAKRSKTLHK 359
Query: 406 VFE 408
E
Sbjct: 360 ACE 362
>gi|124027960|ref|YP_001013280.1| hypothetical protein Hbut_1092 [Hyperthermus butylicus DSM 5456]
gi|123978654|gb|ABM80935.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 441
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 207/381 (54%), Gaps = 36/381 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDT---------- 109
+Y++T+GC+ N +D+ M LS+ GY+ T+ +EAD+ +INT + +DT
Sbjct: 6 VYIETYGCALNMADTAIMRSVLSSRGYSFTNCVDEADVIIINTCTVRLDTEARMKRRIAE 65
Query: 110 LIAKCKSAKKPLVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 164
L A + LVVAGC+ R + VS V +D VE +G ++
Sbjct: 66 LAAIAEKTGARLVVAGCMASAQPYTVKRIAPKAVLVSTYNVHLVDIAVE------RGLDL 119
Query: 165 RLLHRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
R+K L P R R K E+ PI GCLG C++C TK AR + S VE++V
Sbjct: 120 LTPPREKPKPLFKPTPRLMLRGKIAEV-PIAEGCLGDCSFCITKIARRRVYSRPVENIVK 178
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 279
VR ++ G E+ L+ +D YG D+ LP L+ ++ +G M+RIGM +P
Sbjct: 179 LVRELVRLGAVEIRLTGQDIAVYGIDLYGKRLLPELVRRVIEV---EGDFMVRIGMMSPD 235
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ L E EV RHP V+ F+H+PVQSG D VL M R YT+ ++R +V + VPG+
Sbjct: 236 QLEPILDEFLEVFRHPKVFKFVHLPVQSGDDRVLRIMKRNYTVDEYRAIVREIRNKVPGV 295
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDII G PGE +E F TV LI+E +F +VH++Q+ PR T AA + +VP V KKR
Sbjct: 296 MIATDIIVGHPGEDEEAFENTVRLIEELRFERVHLAQYTPRQRTVAAGLPQVPDPVKKKR 355
Query: 400 SRELTSV-----FEAFTPYLG 415
S+ LT V E Y+G
Sbjct: 356 SKRLTEVVMRIGLEEHRRYIG 376
>gi|282163181|ref|YP_003355566.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
gi|282155495|dbj|BAI60583.1| putative 2-methylthioadenine synthetase [Methanocella paludicola
SANAE]
Length = 406
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 214/395 (54%), Gaps = 26/395 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-----TLIAKCK 115
IY++T GC+ N SDS+ + + A G + EEAD ++NT + + L A K
Sbjct: 3 IYIETHGCTANASDSQAIRNSVLASGGEVVGTPEEADTVVVNTCAVTEFTSKSMLKAIKK 62
Query: 116 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 175
+ K +VVAGC+ L L+G+ R +++ E R+L +PA
Sbjct: 63 YSGKRVVVAGCMAAAQPYL--LKGI---------RNIQIAEAPGAEAVARML--GIMPAA 109
Query: 176 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 235
P ++ V + I GC G C+YC + RG L S VE +V ++T + G +E+
Sbjct: 110 GRPFIKGTSAV--VSIAEGCRGHCSYCIVRLVRGPLRSAPVEEVVHSIKTALRMGAREIL 167
Query: 236 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 295
L+++DTGAYG D G LP L+ I L +G +R+GM NP I + L ++A + P
Sbjct: 168 LTAQDTGAYGLDAGERLPALMKEI---LSIEGDYRIRLGMMNPFSIADILGDMARIFNDP 224
Query: 296 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 355
VY F H+PVQSGSD +L M R YT S +R +V L + VPG+ ++TD I GFP ETDE
Sbjct: 225 RVYRFAHIPVQSGSDRILGLMERPYTESQYRDIVARLRQEVPGITLSTDYIVGFPTETDE 284
Query: 356 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP-YL 414
DF T++ ++ + +V+I++F PRPGTPAA M+ +P + K+RSR LT + T Y+
Sbjct: 285 DFALTMDDLRSTRPLKVNITRFSPRPGTPAACMENLPFRIKKERSRALTQLHHGITSEYM 344
Query: 415 -GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 448
GR + +TE G V Y V++P
Sbjct: 345 RDSAGRRLSVLVTEEGKPGTS-VARDDCYHMVVIP 378
>gi|255514141|gb|EET90403.1| RNA modification enzyme, MiaB family [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 423
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/397 (31%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
Y+KT+GC+ NQ+DS+ + L + ++ ++AD+ ++NT + + L+ K
Sbjct: 4 YIKTYGCTLNQADSDIINSVLDSANIGQAESMQDADVIIVNTCTVKNPTEQKISDLLKKL 63
Query: 115 KSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+S K+ ++V GC+ + D+ SIV + ++ + + V T G V + +K
Sbjct: 64 ESEKRKVLVTGCMAAANPDIISNASPSASIVTISNLEDMPDAVSRTASGERVVMSSLQKR 123
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
L K R+ I P++ GC+ +C++C+TK AR L S++ + ++ V+ + G
Sbjct: 124 DRLASFKPRQGPVARI-PVSDGCMSSCSFCETKFARSALNSFSEDLILNAVKYSVKSGAV 182
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ ++S+D GAYG D N+ +L+ I +G +RIGM NP + ++ E A L
Sbjct: 183 EIDITSQDIGAYGADRKSNIALLMEKISR---IEGFFKVRIGMLNPERLAGYINEFASAL 239
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
+ Y F H+P+QSGSD+VL +M R YT+ + VD L VPG+ I TD+I G+P E
Sbjct: 240 GNEKFYKFAHLPLQSGSDSVLKSMRRNYTVDQYLEFVDVLRSYVPGISIETDMIVGYPTE 299
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
TDEDF ++ ++K ++ +IS+F R T A +MK++ ++K+RS E+ S
Sbjct: 300 TDEDFTNSIEVLKSFRPDVTNISRFGARRHTAAHKMKQLDQTLIKERSSEMYSAVRGIQH 359
Query: 413 YLGMEGRV--ERIWITEIAADGIHLVGHTKGYVQVLV 447
G+ G+ +RI + G+ + G T Y QV++
Sbjct: 360 --GINGKFVGQRITALMTESTGVSINGRTDSYKQVVL 394
>gi|76154241|gb|AAX25732.2| SJCHGC04814 protein [Schistosoma japonicum]
Length = 350
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 156/239 (65%), Gaps = 20/239 (8%)
Query: 255 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 314
LL +V +PP MLR+GMTNPP+IL+ L EIAEVL HP VYSFLH+PVQSGSDAVL
Sbjct: 24 LLAGLVPLIPP--GCMLRLGMTNPPYILDQLVEIAEVLSHPRVYSFLHIPVQSGSDAVLD 81
Query: 315 AMNREYTLSDFRTVVDTLIELVP-----------------GMQIATDIICGFPGETDEDF 357
AM REYT+ +F TVVD L++ V + IATD+ICGFP ET+++F
Sbjct: 82 AMKREYTVEEFSTVVDYLMKNVKPPSLPPYALDDAPNGSGALTIATDVICGFPTETNKNF 141
Query: 358 NQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGM 416
+T LIK+Y+FP +HI+QF+ RPGTPAA M +K S+ VK R+R L +F ++ Y G
Sbjct: 142 EETFELIKKYRFPVLHINQFFARPGTPAANMSRKANSSEVKHRTRRLHDLFRSYRTYDGR 201
Query: 417 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
G R+ ITE + DG VGHTK Y Q+L+P ++ G LV+IT ++ + G +I
Sbjct: 202 IGCEVRVLITEPSFDGKFWVGHTKAYEQILLPKLPDVYGCIVLVRITECDKFFMRGIII 260
>gi|307595884|ref|YP_003902201.1| MiaB family RNA modification enzyme [Vulcanisaeta distributa DSM
14429]
gi|307551085|gb|ADN51150.1| RNA modification enzyme, MiaB family [Vulcanisaeta distributa DSM
14429]
Length = 452
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 149/440 (33%), Positives = 236/440 (53%), Gaps = 40/440 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL------IAKCKSAK 118
TFGC N++DS+ M +L + G+ T++ E AD ++NT + + + K S +
Sbjct: 9 TFGCWLNKADSDIMITKLRSLGWEYTEDVESADTIIVNTCAVREEAERNELKLLKRLSEE 68
Query: 119 KP---LVVAGCV----PQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
P L+VAGC+ P +D+ +S G + ID EVV H K
Sbjct: 69 YPGKRLIVAGCLTRIRPATIKDVSPNAMLISSHGAELID---EVVSSNTDVHVYEDRPAK 125
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVI 227
LP P++ +++V +PI VGCLG C++C TK R G + SY ++ +V + +
Sbjct: 126 YLPNY-YPELHGHRYV--VPIQVGCLGNCSFCVTKIGRMGFGRVKSYGIDDIVNAITNAV 182
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+ G +E++L+ ++ AYGRD G +L LL I+A++ DG M+R+GM P + +
Sbjct: 183 SKGAREIYLTGQEISAYGRDRGYDLADLLEKILAKV--DGRFMVRLGMMEPLELSRIIDR 240
Query: 288 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
+ +V++ VY F HVPVQSGSD VL M R+Y++ FR +V + P +ATDII
Sbjct: 241 LLDVVKSDWRVYRFFHVPVQSGSDRVLMLMRRKYSVDLFRDIVKRIRNAFPDATVATDII 300
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
GFPGETDEDF +V LI+E +V+++++ RP T AA M++VP V K+RS+ T V
Sbjct: 301 VGFPGETDEDFWASVRLIEELGIDKVNLARYSRRPFTEAAYMEQVPEQVKKERSKIATDV 360
Query: 407 F-----EAFTPYLGMEGRVERIW--ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
F E ++G E +W ++E+ G + V + Y + V +G
Sbjct: 361 FNRVALERNKTFIGRE-----MWGIVSEVDFKGENYVVRSYNYKPIAVRKAD--IGAFVR 413
Query: 460 VKITSVGRWSVFGEVIKILN 479
VK+T +FG++++ N
Sbjct: 414 VKVTDATSQRLFGQLLESEN 433
>gi|256811070|ref|YP_003128439.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
gi|256794270|gb|ACV24939.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus fervens AG86]
Length = 418
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 142/431 (32%), Positives = 229/431 (53%), Gaps = 32/431 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++ +GC N +D+E + L G+ L DN EEADI +INT ++ M I +
Sbjct: 5 VYVEGYGCVLNTADTEIIKNSLKEAGFKLVDNLEEADIVVINTCVVRLETENRMIYRINE 64
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH--------EVR 165
K+ K +VVAGC+P+ ++ +++ + ++ + E++ ++ H E+
Sbjct: 65 LKNLGKEVVVAGCLPKALKN--KVKDFLHIYPRESYKAGEILRYYIEKHYRMPYIEEEIN 122
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
KKL L + + LPI GCLG C+YC K ARG L SY E +V + +
Sbjct: 123 KTLYKKLDYL------KPSLITPLPICEGCLGNCSYCIVKIARGKLISYPREKIVNKAKE 176
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+I GVK ++++++DT YG DIG NL LLN + +G ++R+GM + + L
Sbjct: 177 LINKGVKCLFITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNVEPIL 233
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
E+ E ++ V FLH+P+QSG D +L MNR YT+ +F+ +VD V + TDI
Sbjct: 234 DELIEAYQNEKVGKFLHLPLQSGDDEILKKMNRGYTVDEFKEIVDEFRRKVRNLCFTTDI 293
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
I GFPGET+E F T+ ++KE K +H +++ R GT AA+MK+V + + K+RS L
Sbjct: 294 IVGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKRRSEILDK 353
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+ + YL + V + + +G G+T + +V G +G VKIT
Sbjct: 354 LRRELS-YLNNKKYVGKTMRVLVLDEG---KGYTDNF--KVVKFEGGEIGEFRKVKITDA 407
Query: 466 GRWSVFGEVIK 476
+ + GE+ K
Sbjct: 408 KTFGLRGEIEK 418
>gi|315424979|dbj|BAJ46654.1| tRNA modifying enzyme [Candidatus Caldiarchaeum subterraneum]
gi|343484572|dbj|BAJ50226.1| 2-methylthioadenine synthase [Candidatus Caldiarchaeum
subterraneum]
Length = 432
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 138/431 (32%), Positives = 228/431 (52%), Gaps = 27/431 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC 114
+ +Y + +GCS NQ+D E G L GY + + EAD ++ T + D +I +
Sbjct: 12 QKVYAEVYGCSANQADGEIALGILQKQGYIMVERPNEADYVVLVTCAVKKPTADRMIHRI 71
Query: 115 K---SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K S L+VAGC+ G + + + V+ V R + V ++GH K
Sbjct: 72 KKFSSLGPRLIVAGCMATG--EAERVRRVAPEAVLLPPRSITEVSAAIEGHGFDGGGTK- 128
Query: 172 LPALDLPKVRRNKFVEILPINVGC-LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L LP++R+N + I+P++ GC C++C +R SY V ++V VR + +G
Sbjct: 129 ---LGLPRLRKNPVIAIVPVSEGCRWSRCSFCIVPRSRPGYESYPVRAVVDEVRKAVNEG 185
Query: 231 VKEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
+EVWL+S+D G+YG + G NL P L+ ++ + +G RIGM NP ++ L+++
Sbjct: 186 CREVWLTSQDMGSYGLESGRNLLPELIESVNSL---EGKFYTRIGMMNPIYLKPILQKLV 242
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
+ +Y F+HVPVQSGSD VL MNR +++ F VV+ P + ++TD+I G+
Sbjct: 243 KAYSGEKIYKFIHVPVQSGSDKVLKDMNRGHSVQLFYHVVEAFRRRFPSITVSTDLIVGY 302
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV--- 406
P ETDEDF QT+ L+++ + V++S+++PRPGTP +K +P VV +R EL +
Sbjct: 303 PTETDEDFEQTLKLVEKTRPAVVNVSRYFPRPGTPGEGLKTLPHHVVARRVSELNDLLSK 362
Query: 407 --FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
E+ +LG G V I E+ G ++G Y +++ + LG ++
Sbjct: 363 IQLESNEHWLGWVGEV---LINEVGKKG-KMMGRNFAYRPIVLDAPRESLGRFVEAEVVD 418
Query: 465 VGRWSVFGEVI 475
V + + G V+
Sbjct: 419 VEKNYLLGRVL 429
>gi|402584247|gb|EJW78189.1| radical sam protein, partial [Wuchereria bancrofti]
Length = 224
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 141/200 (70%), Gaps = 1/200 (0%)
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
MLR+GMTNPP+IL+ L+EI+E+L HP VYSFLH+PVQS SDAVLS M REYT DF VV
Sbjct: 1 MLRLGMTNPPYILDFLEEISEILNHPRVYSFLHIPVQSASDAVLSDMKREYTCIDFCRVV 60
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
D +I+ VP + IATD IC +P ET+ DF +++ L+++Y+FP + I+QFYPR GTPAA +K
Sbjct: 61 DYMIQNVPNIYIATDFICAYPTETESDFEESMALVRKYRFPSLFINQFYPRIGTPAANLK 120
Query: 390 KVPSAVVKKRSRELTSVFEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVP 448
K+ + ++R+ E++S+F +++ Y G R+ + E+A D H VGH K Y L+P
Sbjct: 121 KIDTIEARRRTAEMSSLFRSYSRYNKERIGEKHRVLVCELATDQQHYVGHNKYYEHFLIP 180
Query: 449 STGNMLGTSALVKITSVGRW 468
S +LG V+IT V ++
Sbjct: 181 SKKCLLGKWVQVRITDVSKF 200
>gi|383319340|ref|YP_005380181.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
gi|379320710|gb|AFC99662.1| MiaB-like tRNA modifying enzyme, archaeal-type [Methanocella
conradii HZ254]
Length = 407
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/426 (34%), Positives = 219/426 (51%), Gaps = 30/426 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-----TLIAKCK 115
+Y++T+GC+ N DS M + A G + + +EAD+ +INT + + L A K
Sbjct: 3 VYIETYGCTANMGDSHRMRSSIQAAGCCVAERPDEADVIIINTCAVTEPTSRGMLKAIKK 62
Query: 116 SAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K ++VAGC+ L E G V G E +K +R +H K L
Sbjct: 63 YEDKRVIVAGCMAAAQPYLLEGLGGNVECAGAPG-------AEAAMKLLGIRPVHGKPL- 114
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
I+ I GC+G CTYC + ARG L S S+ V+ + G KE
Sbjct: 115 --------LKGKTAIISIAEGCVGKCTYCIVRLARGTLRSAPPASIKKSVKDALEMGAKE 166
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
++L+++DTGAYG DIG+ LP L++ + L +G +R+GM NP I + L ++ + +
Sbjct: 167 IFLTAQDTGAYGIDIGIRLPKLMHDM---LGIEGDYRVRLGMMNPFSIADILDDVIRIFQ 223
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
P VY F H+P+QSGSD +L M R YT S + +V L E +P + ++TD I GFP ET
Sbjct: 224 DPHVYKFAHIPIQSGSDRILRLMGRPYTESQYSDMVRRLRECIPDITLSTDYIVGFPEET 283
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-P 412
D DF T+ ++ K +V+I++F PRPGT AA+M +P A+ K+RSR LT + T
Sbjct: 284 DGDFEMTMEDLRANKPLKVNITRFSPRPGTVAAKMDDLPMAIKKERSRALTRLHHEITSA 343
Query: 413 YLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 471
Y+ GR + +TE G V Y V++P+ G VKI +
Sbjct: 344 YMRSSIGRRLSVLVTEEGKPG-SSVARDDSYHMVVIPAALP-PGARLDVKICGASTTYMI 401
Query: 472 GEVIKI 477
G+ I+I
Sbjct: 402 GKPIEI 407
>gi|126465996|ref|YP_001041105.1| RNA modification protein [Staphylothermus marinus F1]
gi|126014819|gb|ABN70197.1| RNA modification enzyme, MiaB family [Staphylothermus marinus F1]
Length = 429
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 234/443 (52%), Gaps = 48/443 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDTLIAKCKSAK- 118
IY++T+GC+ N+ D M L + G+ L + EAD +INT + DT + K K
Sbjct: 5 IYIETYGCALNRGDEYIMKTVLVSRGHKLVEEITEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 119 ---------KPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEE-----TLKGH 162
K L++AGC+ Q + K S+V Q ++ VE LKG
Sbjct: 65 LYRIASEQNKKLIIAGCMAKAQPYKIHKIAPKTSLVSPQNAPKIWIAVESDGQVFLLKGE 124
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
R + + +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RNRRILGTYV----------DKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
V+ ++ GV E+ ++ +DT +YG D+ LP LL + G+ M+RIGM NP
Sbjct: 175 VKELVGKGVVEIEITGQDTASYGLDLYGKQMLPNLLEELDG---IKGNFMIRIGMMNPDT 231
Query: 281 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ L E+ EV+++ +Y FLH+P+QSGSD VL M R+YT+ ++R +V L + +P +
Sbjct: 232 LANILDELIEVIKNSAHIYRFLHIPLQSGSDKVLRIMRRKYTVDEYREIVKILRKKIPEI 291
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDII G PGE +EDF QT+++IKE KF +VH + + RP T +A ++++P++V K+R
Sbjct: 292 SIATDIIVGHPGEEEEDFEQTLDIIKELKFERVHPAVYSIRPNTYSASLRQIPTSVKKER 351
Query: 400 SRELTSVFEAFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
L + E +G+E G+V +ITE + I G T Y+ V++ S +
Sbjct: 352 MLRLLKIIEN----VGLEVHRKYLGKVLDTFITEHSNTWI---GRTLNYIPVIIFSENTL 404
Query: 454 -LGTSALVKITSVGRWSVFGEVI 475
G ++IT+ + + G ++
Sbjct: 405 DFGKHVKIQITNATFYDLRGVIV 427
>gi|298675805|ref|YP_003727555.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
gi|298288793|gb|ADI74759.1| MiaB-like tRNA modifying enzyme [Methanohalobium evestigatum
Z-7303]
Length = 433
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 232/439 (52%), Gaps = 35/439 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----K 115
+++ T+GC +Q+ SE M + G+ L D + AD+ + NT + T K +
Sbjct: 3 VHVATYGCPSSQAASEIMMDAIKRQGHELVD-EKSADVVVFNTCTVKYTTEQKILHKIGE 61
Query: 116 SAKKPL--VVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE--ETLK-----GHEV 164
+K L VV+GC+P+ D L + I+GV I R+ EV++ E K G +
Sbjct: 62 LGRKGLEVVVSGCMPEVQHDDILDNNQDAHILGVNSITRINEVLDSIENAKNKNNSGRRL 121
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ + L+ P+ R N+ + I I+ GC C YC + ARG L S+ ++S+V VR
Sbjct: 122 EIFSSRPDDILNAPRTRFNQNIHICQISQGCNNRCAYCVVRTARGKLKSFDIDSIVEDVR 181
Query: 225 TVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+++G +E+W++S+D YG R GV LP LL+ + + +G+ +R+GM NP +
Sbjct: 182 KAVSEGCREIWITSQDNAQYGIDRQNGVLLPQLLDRVAS---IEGNFKIRVGMMNPFSVY 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
L ++ +V + +Y FLH+P+QS S+ VL MNR YT+S+ ++ + +
Sbjct: 239 PILDDLLKVYENNKIYKFLHLPIQSASEKVLGYMNRNYTMSEVDEIITKFRSRFNDLTLV 298
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 402
TDII GFPGET++DF ++++ +K Y+ +V+IS++ PRP T A + + S +V +RS E
Sbjct: 299 TDIIVGFPGETEDDFYKSIDWVKNYRPDKVNISRYTPRPHTKALEYRNIDSRIVVRRSNE 358
Query: 403 LTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLG 455
L V E+ +G G+V ++ D + ++ T+ Y V++P + G
Sbjct: 359 LHHVCDTVKLESKKEMVGWHGKV------FVSKDAKYKGVMARTESYKPVVIPESNLPPG 412
Query: 456 TSALVKITSVGRWSVFGEV 474
V+IT G++
Sbjct: 413 QWCDVEITDTTSGYFLGKL 431
>gi|351710010|gb|EHB12929.1| CDK5 regulatory subunit-associated protein 1-like 1 [Heterocephalus
glaber]
Length = 279
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 137/203 (67%), Gaps = 21/203 (10%)
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
MLR+GMTNPP+ILEHL+E+A++L HP VY+FLH+PVQS SD+VL M REY ++DF+ VV
Sbjct: 1 MLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIPVQSASDSVLMEMKREYCMADFKRVV 60
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
D L + VPG+ IATDIICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M+
Sbjct: 61 DFLKKKVPGITIATDIICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKME 120
Query: 390 KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 449
+VP+ V+ G +++ +TE + D V H + Y QVLVP
Sbjct: 121 QVPTQVI---------------------GEKQKVLVTEESFDSKFYVAHNQFYEQVLVPK 159
Query: 450 TGNMLGTSALVKITSVGRWSVFG 472
+ +G V I G+ + G
Sbjct: 160 NPSFMGKMVEVDIYESGKHFMKG 182
>gi|21228284|ref|NP_634206.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
gi|20906744|gb|AAM31878.1| hypothetical protein MM_2182 [Methanosarcina mazei Go1]
Length = 435
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 140/440 (31%), Positives = 234/440 (53%), Gaps = 33/440 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTQSAMDT----LIAKC 114
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+ + T ++ K
Sbjct: 3 VYLESFGCSASQASAEIMKASIGKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 115 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRV---VEVVEETLK----GH 162
+S + ++V+GC+P+ + L I+GV + R+ + +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLSTIEQRKKTGIPGG 122
Query: 163 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEII 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+L L ++ + ++ LH+P+QS S +VL MNR + + ++ +
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVDEIITKFRAHFEDLS 298
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + KRS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRS 358
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
+L V E+ +G +GRV TEI ++ T Y V++ + G
Sbjct: 359 HQLHKVCEQIKIESKNEMIGWKGRVFVSKYTEIG----DVLTRTDSYRPVVISGSDLRPG 414
Query: 456 TSALVKITSVGRWSVFGEVI 475
A VKIT G+++
Sbjct: 415 EYAEVKITGAKPGYFLGKLV 434
>gi|297527331|ref|YP_003669355.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
gi|297256247|gb|ADI32456.1| RNA modification enzyme, MiaB family [Staphylothermus hellenicus
DSM 12710]
Length = 429
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 144/443 (32%), Positives = 231/443 (52%), Gaps = 48/443 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDTLIAKCKSAK- 118
+Y++T+GC+ N+ D M L + G+ L + EAD +INT + DT + K K
Sbjct: 5 VYIETYGCALNRGDEYIMKTVLVSRGHRLVNEIAEADTIIINTCTVRYDTELKMIKRIKE 64
Query: 119 ---------KPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEET-----LKGH 162
K L+VAGC+ Q + K S+V Q ++ VE LKG
Sbjct: 65 LYKIASEQNKKLIVAGCMAKAQPYKIHKIAPRASLVSPQNASKIWIAVESDKQVFLLKGE 124
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
R ++ +K + LPI GCLG C++C K+AR L SY + +
Sbjct: 125 RDR----------NILGTHVDKQIAYLPIQEGCLGNCSFCIVKNARRQLVSYPINKIKNT 174
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
V ++ GV E+ L+ +DT +YG D+ LP LL + G+ M+RIGM NP
Sbjct: 175 VEELVGKGVVEIELTGQDTASYGLDLYGKQKLPHLLEELDR---IKGNFMIRIGMMNPDT 231
Query: 281 ILEHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ L E+ E++++ +Y FLH+P+QSGSD VL M R+YT+ ++R ++ TL + +P +
Sbjct: 232 LANILDELVEIIKYSAHIYRFLHIPLQSGSDKVLRVMKRKYTVDEYREIIKTLRKKIPEI 291
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
IATDII G PGE +EDF QT+++IKE KF ++H + + RP T +A +++VP++ K R
Sbjct: 292 SIATDIIVGHPGEEEEDFEQTLSIIKELKFERIHPAVYSIRPNTYSASLRQVPTSDKKIR 351
Query: 400 SRELTSVFEAFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
L + E +G+E G++ ++TE + I G T Y+ V++ S +
Sbjct: 352 MLRLLKIIED----VGLEIHRKYLGKILDTFVTEYSNTWI---GRTLNYIPVIIFSNNTL 404
Query: 454 -LGTSALVKITSVGRWSVFGEVI 475
G +IT+ + + G ++
Sbjct: 405 NFGDHVKTQITNATFYDLRGVIV 427
>gi|289192765|ref|YP_003458706.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
gi|288939215|gb|ADC69970.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus sp. FS406-22]
Length = 415
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 229/429 (53%), Gaps = 30/429 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++ +GC N +D+E + L G+ +T++ EEA+I +INT ++ M I +
Sbjct: 3 VYVEGYGCVLNTADTEIIKNSLREHGFEITEDLEEANIAIINTCVVRLETENRMIYRINE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K+ K +V+AGC+P+ ++ +++G + ++ R E++++ ++ H +R
Sbjct: 63 LKNLGKEVVIAGCLPKALKE--KVKGFLHIYPREAHRAGEILKDYIEKH-----YRMPYI 115
Query: 174 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
D+ K K + LPI GC+G C+YC K ARG+L SY E +V + + +
Sbjct: 116 EEDINKTLYKKLDYLTPSLISPLPICEGCIGNCSYCIVKIARGNLISYPREKIVNKAKEL 175
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
I G K + ++++DT YG DIG NL LLN + +G ++R+GM + L
Sbjct: 176 INKGAKCLLITAQDTACYGFDIGDNLANLLNDLTQ---IEGEFIMRVGMMHAKNAELILD 232
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+ EV + V FLH+P+QSG D +L M R YT+ +F+ +V+ + + TDII
Sbjct: 233 ELIEVYKDDKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 292
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
GFPGET+E F T+ ++KE K +H +++ R GT AA+MK+V + + K+RS L +
Sbjct: 293 VGFPGETEEQFQNTLEVLKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEILDKL 352
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
+ YL + V + I +G G+T + +V G +G VKIT
Sbjct: 353 RRELS-YLNNKKYVGKTMRVLILDEG---KGYTDNF--KVVKFEGGEIGEFRKVKITDAK 406
Query: 467 RWSVFGEVI 475
+ + GE+I
Sbjct: 407 TFGLRGEII 415
>gi|374632057|ref|ZP_09704431.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
gi|373525887|gb|EHP70667.1| MiaB-like tRNA modifying enzyme [Metallosphaera yellowstonensis
MK1]
Length = 418
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 144/434 (33%), Positives = 226/434 (52%), Gaps = 37/434 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y +T+GC+ N+ D+ M L + LT++ AD+ +INT + M I +
Sbjct: 3 VYFETYGCTLNKGDTLTMMSLLRERKHQLTNDISSADVIVINTCTVRMETEEKMKKRIKE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
S K LVVAGC+ L S++G Q ++ VV+ VE + R++
Sbjct: 63 LVSTGKKLVVAGCLAGAEPALVTSLAPSASLIGPQSLESVVKAVE-----GDSRVVEIGS 117
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LPKV + ++PI GC G C +C TK AR L SY++ ++ V+ + G
Sbjct: 118 KPPTLLPKVHEG-LIAVIPIADGCAGHCNFCITKLARRILRSYSMRAIKEAVQESVRRGA 176
Query: 232 KEVWLSSEDTGAYGRDIGVNL--PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ L+ +DT AYG D+G + P L+ I + +G M+R+GM P + L EI
Sbjct: 177 KEIELTGQDTAAYGLDLGGLVGLPDLVREISS---VEGDFMIRVGMMTPDLAMRRLDEII 233
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
E HP VY F H+PVQSG+D VL M R+YT+ +F+ +V + +P I TD+I G
Sbjct: 234 EAWSHPKVYKFFHIPVQSGNDRVLRLMGRKYTVEEFKALVKEIRSRIPQSNITTDVIVGH 293
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
PGE ++ F T++L++E KF ++HI+ + RP T ++ M +VP V ++R +E S++E
Sbjct: 294 PGEDEDAFKDTLDLMRELKFERIHIAMYSLRPNTRSSMMPQVPGDVKRRRLKEAVSLYEE 353
Query: 410 FT-----PYLGMEGRV---ERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
+ Y+G E RV ER G ++ T+ Y+ V++ LG VK
Sbjct: 354 LSLEVHKKYVGREMRVLALER-------GKGESVLARTENYIPVVLDMVE--LGRWYDVK 404
Query: 462 ITSVGRWSVFGEVI 475
I + + G +I
Sbjct: 405 IIDSSFFDLRGMII 418
>gi|440912126|gb|ELR61722.1| hypothetical protein M91_07895, partial [Bos grunniens mutus]
Length = 277
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 135/190 (71%)
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
KE+A++L HP VY+FLH+PVQS SD VL M REY ++DF+ VVD L + VPG+ IATDI
Sbjct: 1 KEMAKILHHPRVYAFLHIPVQSASDTVLMEMKREYCVADFKRVVDFLKDKVPGITIATDI 60
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
ICGFPGETD+DF +TV L++EYKFP + I+QFYPRPGTPAA+M++VP+ V K+R++EL+
Sbjct: 61 ICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSR 120
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+F ++ PY G+ +++ +TE + D V H + Y QVLVP +G V I
Sbjct: 121 IFHSYNPYDHKIGQRQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPTFMGKMVEVDIYES 180
Query: 466 GRWSVFGEVI 475
G+ + G+ +
Sbjct: 181 GKHFMKGQPV 190
>gi|435850791|ref|YP_007312377.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
gi|433661421|gb|AGB48847.1| MiaB-like tRNA modifying enzyme [Methanomethylovorans hollandica
DSM 15978]
Length = 433
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 232/436 (53%), Gaps = 27/436 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+Y+ TFGCS NQ+ +E M + + G+ L + + AD+ ++NT S ++ K +
Sbjct: 3 VYVSTFGCSANQASAEVMMATIRSLGHELV-SEKHADVVVLNTCTVKYSTEQKILHKIRE 61
Query: 117 AKKP---LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVE---------ETLKGH 162
+ +VVAGC+P+ + ++ I+GV I R+ EV+ +T
Sbjct: 62 LGEKGIEVVVAGCMPEVQLEDIIRNNPDAHILGVNSISRIGEVLNSIASPNLCSQTTSRQ 121
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + + +++P++R N + I ++ GC AC+YC + RG L S+ +S+V
Sbjct: 122 ALHVFSHEPEGFINVPRLRFNSNIHICQLSQGCNNACSYCIVRFVRGPLRSFHPDSIVED 181
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+R +A+G +E+WL+S+D YG DIG+ LP LL I ++P G +R+GM NP +L
Sbjct: 182 IRQGVAEGCREIWLTSQDNAQYGIDIGLRLPQLLERI-CDIP--GDFKVRVGMMNPFSVL 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
L+E+ + +Y +H+PVQS S+ VL MNR +++ + V+++ + + +
Sbjct: 239 PILEELLHAFENDKIYKLVHLPVQSASNDVLKRMNRFHSIEEADLVINSFRDRFDDLTLF 298
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 402
TDII GFPGE + DF T+ +K+ K +++IS++ PRP T A + + S +V +RS E
Sbjct: 299 TDIIVGFPGENEADFVTTLEWVKKQKPEKINISRYTPRPHTKALEYRNIDSRIVVQRSNE 358
Query: 403 LTSVFEAFTPYL--GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L +V E + M G R++I+ E G L+ T Y V++P + + G+
Sbjct: 359 LHAVCEEVKTGVRENMMGWQGRVFISKEAKVKG--LMARTASYKPVVIPESSAVPGSFCD 416
Query: 460 VKITSVGRWSVFGEVI 475
V+I G V+
Sbjct: 417 VEIFDATPGYFLGRVV 432
>gi|147919729|ref|YP_686525.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
gi|110621921|emb|CAJ37199.1| putative 2-methylthioadenine synthetase [Methanocella arvoryzae
MRE50]
Length = 404
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 148/427 (34%), Positives = 222/427 (51%), Gaps = 33/427 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----QSAMDTLIA 112
T +Y++T+GC+ N++DS + + A G A+ + EEAD+ ++NT +A L A
Sbjct: 2 TMRVYIETYGCTANEADSAGIRDAVLASGGAIASSPEEADVIVVNTCAVTGHTANSMLRA 61
Query: 113 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ K ++VAGC V + R LK E V G + VR L +
Sbjct: 62 VSRFPGKRVLVAGCLAVAEPGR-LKGYEFVDGPGSLPV---------------VRALGLR 105
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
L + R ++I GC G C+YC + RG + S +V R IA+G
Sbjct: 106 PEAGLSIAMTGRTATIKIAE---GCNGQCSYCIVRLVRGRIRSTPAPDIVEAARRAIAEG 162
Query: 231 VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
E++L+S+D+GAYG D GV LP L+ +I A LP G+ +RIGM NP I + L ++ +
Sbjct: 163 ASELFLTSQDSGAYGLDTGVRLPTLIRSI-ASLP--GNFKVRIGMMNPFSIADILPDMVD 219
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
VL HP VY F H+PVQSGSD +L M R YT ++ ++ L VPG+ +TD I GFP
Sbjct: 220 VLNHPKVYRFAHIPVQSGSDRILKLMQRPYTEQEYSAIISRLRAGVPGITFSTDYIVGFP 279
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
ET+ DF T+ ++ + +V+I++F PRPGTPAA M V K+RSR LT++
Sbjct: 280 TETEADFRLTLEDLRTNRPLKVNITRFSPRPGTPAAAMPDVLERTKKERSRMLTALHHEV 339
Query: 411 TPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
T + E G + ++E G ++ Y V++ LGT A V+I++
Sbjct: 340 TSHDLKEAVGSRRSVLVSEKGKPGT-VIARDPSYNMVVI-EEDLPLGTVANVEISAAKTT 397
Query: 469 SVFGEVI 475
+ G I
Sbjct: 398 YLIGRRI 404
>gi|159041572|ref|YP_001540824.1| RNA modification protein [Caldivirga maquilingensis IC-167]
gi|157920407|gb|ABW01834.1| RNA modification enzyme, MiaB family [Caldivirga maquilingensis
IC-167]
Length = 422
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 236/432 (54%), Gaps = 27/432 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAM-DTLIAKCKSAK 118
T Y++T+GC N++DS M L GY ++ +AD+ L+NT + D+ I + K+ +
Sbjct: 3 TYYIETYGCWLNKADSALMEEDLRRMGYVKVNDPAQADLILVNTCAVREDSEIRELKAIE 62
Query: 119 K------PLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
K L+VAGC+ + S ++ IV ++ + E+++ + E RL+ R
Sbjct: 63 KYSRLGKKLIVAGCLTKARPSEIMRLAPDALIVNPSSVENLAELLKGGVNLTE-RLMVR- 120
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVI 227
+PK + V ++PI VGCLG C+YC K+ RG +G S + + + +
Sbjct: 121 ------IPKYYESSHVYVVPIQVGCLGNCSYCVIKYTRGGMGWVKSADLSVVKESIAKAV 174
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
A G +E++L+ ++ AYG+D G +L LL A++ ++ +G ++R+GM P + +
Sbjct: 175 ARGAREIYLTGQEISAYGKDKGYDLVDLLEAVLRDV--EGRYLIRLGMLEPLELEGMIHR 232
Query: 288 IAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
+ +V+++ +Y F H+PVQSGSD VL M R+YT+ F+ V+ + IATDII
Sbjct: 233 LIDVIKNDWRIYRFFHIPVQSGSDKVLRLMKRKYTVDLFKREVELIRRSFRNSFIATDII 292
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
G PGE D DF ++V LI+E +VH++++ PRP T AA M++VP V K+RS L+ V
Sbjct: 293 VGHPGEDDSDFQESVRLIRELGIDKVHVARYSPRPFTEAAYMRQVPDQVKKQRSSMLSKV 352
Query: 407 F--EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
A++ L G I+ I G L+ Y V++ + G+ LG+ +K+T
Sbjct: 353 ALEVAYSRNLEYVGGTYEGLISSIGFKGRGLMARLMDYRPVII-NEGD-LGSFVKIKVTG 410
Query: 465 VGRWSVFGEVIK 476
++ G++I+
Sbjct: 411 ASSINLIGKIIE 422
>gi|159111403|ref|XP_001705933.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
gi|157434024|gb|EDO78259.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia ATCC 50803]
Length = 525
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 150/504 (29%), Positives = 239/504 (47%), Gaps = 75/504 (14%)
Query: 45 LSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT---------DNSEE 95
L+ S SP + + M T GC HN ++S+ +A L G +T +++ +
Sbjct: 11 LAHAQSTSPLLTNVR-VMMVTMGCGHNAAESDIIASALQTAGAVITHSNGKYITPESARD 69
Query: 96 ADIWLINTQSAMD-------TLIAKCKSAKKPLVVAGCVPQGS-------RDLKELEGVS 141
D+ IN+ + + + K +V+ GCVPQ R + +
Sbjct: 70 VDVLYINSCTVKNPSEDKAFVHVQKGLEVGTVVVLGGCVPQSYGTVNDELRKASAAKQLI 129
Query: 142 IVGV---QQIDRVVEVVEETLKGHEVRLLHRKKLPALDL--------------------- 177
I GV Q + + ++ E + H + H + PAL +
Sbjct: 130 ISGVLTQQWLAALPRLLREAIDLHILNNSHLLQ-PALRMTQPSDKAGVPAAISYVTKEAT 188
Query: 178 -----------PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+
Sbjct: 189 KDVEVEYLKCTPVHRANPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSS 248
Query: 227 IADGV-KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILE 283
+AD + +E+WL+ EDT A+GR+ +LL + + T ML+IGMT+P ++
Sbjct: 249 LADPIIRELWLTGEDTLAWGRESDATFAVLLQEVQKLFETENPTHKMLKIGMTDPDSVIN 308
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ +R VY FLH+PVQSGSD +L+ M R Y + F L VP + + T
Sbjct: 309 QEDSLISFMRCKYVYKFLHLPVQSGSDRILTLMRRHYDIETFLRSCSKLQSAVPDLCLDT 368
Query: 344 DIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
DIICGFPGETDED Q++NL + K F V+I+Q+Y R TPAA M++VP++ ++
Sbjct: 369 DIICGFPGETDEDHAQSLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRE 428
Query: 399 RSRELTSVFEAFTPYLGMEGRVERIWITE---IAADGIHLVGHTKGYVQVLVPSTGN--- 452
R+RE++ V + G+V I + E G G T + V + +
Sbjct: 429 RTREMSEVVKNSFRRDQYHGQVHDIMVLERLQTENHGRQYGGKTYNNLTVAIEAVDQEVP 488
Query: 453 -MLGTSALVKITSVGRWSVFGEVI 475
LG+ V+IT R ++ G V+
Sbjct: 489 IKLGSYVRVRITGSTRVALIGSVM 512
>gi|110773695|ref|XP_396696.3| PREDICTED: CDKAL1-like protein-like [Apis mellifera]
Length = 264
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/209 (54%), Positives = 143/209 (68%), Gaps = 17/209 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAM 107
IPGT+TIY+KT+GC+HN SDSEYMAGQL+A+GY LT+N +AD+WL+N+ +
Sbjct: 56 IPGTQTIYVKTWGCTHNNSDSEYMAGQLAAYGYKLTENKYKADLWLLNSCTVKSPAEDHF 115
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
I K K +VVAGCVPQG+ L+G+S++GVQQIDRVVEVVEETLKG+ VR L
Sbjct: 116 RNEIEAGKKIGKHVVVAGCVPQGAPKSSFLQGLSMIGVQQIDRVVEVVEETLKGNTVRFL 175
Query: 168 HRKKL-------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+KK +L LPKVRRN +EI+ IN GCL CTYCKTKHARG LGSY E L+
Sbjct: 176 QQKKEAGKKIGGASLSLPKVRRNPLIEIIAINTGCLNQCTYCKTKHARGELGSYPPEELL 235
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIG 249
V+T ++ +WL + YGRDIG
Sbjct: 236 -IVQTAFRKRLR-LWLHPK-IQDYGRDIG 261
>gi|308162206|gb|EFO64615.1| tRNA 2-methylthioadenosine synthase [Giardia lamblia P15]
Length = 525
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 238/488 (48%), Gaps = 74/488 (15%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG---------YALTDNSEEADIWLINTQSAMD--- 108
+ M T GC HN ++S+ +A L G Y +++++ D+ IN+ + +
Sbjct: 26 VMMVTMGCGHNAAESDIIASALQTAGAVIIHSNGKYITPESAKDVDVLYINSCTVKNPSE 85
Query: 109 ----TLIAKCKSAKKPLVVAGCVPQG----SRDLKELEG-----VSIVGVQQ-IDRVVEV 154
+ K +V+ GCVPQ S +L++ +S V QQ + + +
Sbjct: 86 DKAFVHVQKGLEVGTVVVLGGCVPQSYGAMSDELRKASASKQLIISGVLTQQWLTALPGL 145
Query: 155 VEETLKGHEVRLLHRKKLPALDL--------------------------------PKVRR 182
+ E + H + H + PAL + P R
Sbjct: 146 LREAIDFHILNTSHVLQ-PALRMTQPSSKAGVSAAISYVTKEATKDVDVEYLKCTPVHRA 204
Query: 183 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWLSSEDT 241
N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R +AD V +E+WL+ EDT
Sbjct: 205 NPIIDIISTGSGCMGSCTYCKTCHSRGRLRSVPLDTLLTRIRNSLADPVIRELWLTGEDT 264
Query: 242 GAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRHPCVYS 299
A+GR+ G LL + L + T ML+IGMT+P I+ +A + VY
Sbjct: 265 LAWGRESGTTFAGLLQEVQKLLETENPTHKMLKIGMTDPDSIINQEDSLASFICCKYVYK 324
Query: 300 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 359
FLH+PVQSGSD +L+ M R Y + F L VP + + TDIICGFPGETDED Q
Sbjct: 325 FLHLPVQSGSDRILTLMRRHYDIETFLKSCSKLQSAVPDLCLDTDIICGFPGETDEDHAQ 384
Query: 360 TVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYL 414
++NL + K F V+I+Q+Y R TPAA M++VP++ ++R++E++ V +
Sbjct: 385 SLNLFRNLKEDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTKEMSEVVKNSFRRD 444
Query: 415 GMEGRVERIWITE---IAADGIHLVGHTKGYVQVLVPSTGN----MLGTSALVKITSVGR 467
G+V I + E + G G T + V++ + LG+ V+IT R
Sbjct: 445 QYHGQVHDIMVLEKLQTESHGRQYGGKTYNNLTVVIETVDQEVPIKLGSYIRVRITGSTR 504
Query: 468 WSVFGEVI 475
++ G V+
Sbjct: 505 VALIGSVM 512
>gi|386001450|ref|YP_005919749.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
gi|357209506|gb|AET64126.1| MiaB-like tRNA modifying enzyme [Methanosaeta harundinacea 6Ac]
Length = 430
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 230/431 (53%), Gaps = 41/431 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----QSAMDTLIAKCK 115
Y++T+GC+ N+ +SE A L G+ + + EEAD+ ++NT ++ D +
Sbjct: 22 FYIETYGCAANRGNSEAFASALVEAGHRRS-SQEEADLVIVNTCAVTERTERDIRRRLSE 80
Query: 116 SAKKPLVVAGC----VPQGSRDLKELEGVSIVGVQQIDRVVEVV--EETLKGHEVRLLHR 169
+ L+VAGC +P+ RDL+ E + I+ R+ E E L G
Sbjct: 81 LQGERLIVAGCLPSAIPEAVRDLRCREVLGILSAPSGRRIGEAFPPEPELAGSG------ 134
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
++ R+ ++ I+ GCLG+C+YC + ARG L S TV+ + VR + +
Sbjct: 135 ---------RMTRD-LCAVVNISEGCLGSCSYCIVRRARGPLRSRTVQEVAEEVRRRLKE 184
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G EV L+S+D AYG D+G +LP L++A VAE+ +G +R+GM NP + L+E+
Sbjct: 185 GAVEVQLASQDAAAYGLDLGSSLPELIDA-VAEI--EGDFRIRVGMMNPGQVKPILEELI 241
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
P VY FLH+PVQSGS VL +M R YT DF ++ L PG+ + TD+I G
Sbjct: 242 RSYDDPKVYKFLHLPVQSGSAEVLRSMRRGYTPQDFLSMAARLRAAFPGLTLYTDVIAGH 301
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
PGE +EDF T LIK+ + +V+++ + RPGT A+R+K +PS + K RSR +T +++
Sbjct: 302 PGEREEDFAATEELIKKAEPDKVNVTMYSSRPGTEASRLKDMPSRLKKDRSRRMTRLWKE 361
Query: 410 FT-----PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
YLG E + +TE+ G ++ + Y +++V + LG+ KI
Sbjct: 362 IAGRRNGRYLGEEIIAQ---VTEMGRGGT-VMARSANYRKIVV-NEPLPLGSVHRFKIVR 416
Query: 465 VGRWSVFGEVI 475
+ + GE I
Sbjct: 417 TTPFYLKGEAI 427
>gi|385806199|ref|YP_005842597.1| MiaB family RNA modification protein [Fervidicoccus fontis Kam940]
gi|383796062|gb|AFH43145.1| RNA modification enzyme, MiaB family [Fervidicoccus fontis Kam940]
Length = 425
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 221/430 (51%), Gaps = 28/430 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTLIA 112
++KTFGC+ N+SDSE M L + G+ DN E AD+ ++NT Q A++ I
Sbjct: 3 FFIKTFGCALNRSDSELMREILISRGFEEIDNLENADVIIVNTCTVRKDSDQKAIE-YIE 61
Query: 113 KCKSAKK--PLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 168
K K K +VVAGC+P L ++ + +R+V+ + +E L
Sbjct: 62 KVKQLNKNSKIVVAGCIPGSQPYLIKSRFPDAVLISPYETNRIVDAI-----FYETDFLG 116
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
++ ++P V+ + I+P+N GCL C +C TK AR L S + ++ ++ ++
Sbjct: 117 YEEFKRYNVPIVKTGN-IAIVPLNDGCLSNCNFCITKVARRRLLSRMPKVILKAIKDLVE 175
Query: 229 DGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+GV E+ LSS+D YG D LP L+ I E+ G MLRI M NP + + L+
Sbjct: 176 NGVYEIQLSSQDASVYGIDFKGRPLLPDLVETINQEIK--GEYMLRIAMMNPDGVKKDLE 233
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
++ + V+ FLH+P+QSG D VL M R+Y++ D VV+ + ++IATDII
Sbjct: 234 NFVKIFEYEHVFKFLHLPIQSGDDEVLKIMGRDYSIEDALYVVNEFRSRIKDLRIATDII 293
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
G PGE++E F T+ ++ F +VHI+Q+ PRP T +ARM ++ +V KKRS L
Sbjct: 294 VGHPGESEEAFENTLKVVVSGLFDRVHIAQYTPRPFTLSARMPQISDSVKKKRSSLLKEE 353
Query: 407 FEAFTPYLGMEGRVERIW---ITEIAADGIHLVGHTKGYVQVLVPSTGNM-LGTSALVKI 462
E ME V +I + E + TK Y+ +++ + LG ++I
Sbjct: 354 LEKVLNK-KMEKYVGKIIEGVVVEKDEKRESYIARTKNYISIVLKGGKKVSLGMKVNIEI 412
Query: 463 TSVGRWSVFG 472
T + + G
Sbjct: 413 TDYTPYDLRG 422
>gi|118431496|ref|NP_148004.2| MiaB-like protein [Aeropyrum pernix K1]
gi|116062821|dbj|BAA80529.2| MiaB homolog [Aeropyrum pernix K1]
Length = 450
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 228/436 (52%), Gaps = 38/436 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDT--LIA-- 112
+ T Y++ +GCS ++ D+ MA +L GY E+AD+ L+NT + +DT IA
Sbjct: 17 SRTYYLEVYGCSLSEFDALIMASRLEEAGYRRVARPEDADVILVNTCAVRLDTEQRIAER 76
Query: 113 ----KCKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRL 166
+ + + VVAGC+ + L + + S++ Q ++RV++ V+ G + +
Sbjct: 77 LEKLRLQLPDRKYVVAGCLVKARPGLVARLVPEASLLAPQAVERVLDAVDALESGRRLVV 136
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L ++ +P++ V + I GCLG C++C TK AR + SY+ +V RVR
Sbjct: 137 LDGRR-DTRSMPQLPITDAVVTVMIQEGCLGDCSFCITKVARRQVRSYSPRVIVERVREA 195
Query: 227 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
+ G +E+ L+ D YG D+ NL L+ AI+ ++ +G +R+GM P + +
Sbjct: 196 VEKGAREIRLTGTDVAVYGVDLPGKPNLADLVAAILEKV--EGDYRIRVGMMTPDQVEPY 253
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L + +V R VY + H+PVQSG D VL M R YT+S+++ + + P IATD
Sbjct: 254 LDSLLDVYRDERVYKYFHLPVQSGDDEVLKIMKRNYTVSEYKAIHRRIKSRFPDAMIATD 313
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
II G PGET E F TV L++E +F +VH++Q+ RP T AA M++VP +V K+RSR L
Sbjct: 314 IIVGHPGETWEAFWNTVRLVEELRFEKVHLAQYSLRPHTEAASMEQVPDSVKKERSRILG 373
Query: 405 SVFEAFTPYLGME------GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
+ +G+E GR R +TE + + G Y +++P
Sbjct: 374 KIVAE----IGLEINGSYVGRRVRALVTERSWREGSMTGRLDNYTPIILPYEER------ 423
Query: 459 LVKITSVGRWSVFGEV 474
++GRW V+ EV
Sbjct: 424 -----AMGRW-VYAEV 433
>gi|452210718|ref|YP_007490832.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
gi|452100620|gb|AGF97560.1| 2-methylthioadenine synthetase [Methanosarcina mazei Tuc01]
Length = 458
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 233/439 (53%), Gaps = 33/439 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTQSAMDT----LIAKC 114
+Y+++FGCS +Q+ +E M + G+ L +N+ +A++++ N+ + T ++ K
Sbjct: 3 VYLESFGCSASQASAEIMKASIRKLGHELLSPENAGQAEVYICNSCTVKYTTEQKILYKI 62
Query: 115 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK----GH 162
+S + ++V+GC+P+ + L I+GV + R+ ++ +E+ K G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEDILHANPEAHILGVNAVSRLGDLLFTIEQRKKTGIPGG 122
Query: 163 EVRLLHRKKLPA--LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E RL R P L++P+ R N + I I+ GC AC+YC KHARG L S+ E ++
Sbjct: 123 E-RLEIRTSEPQGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLLSFPPEEIL 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+R+ +ADG +E+WL+S+D YG D GV LP LL AI +E+P G +R+GM NP
Sbjct: 182 EDIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLRAI-SEIP--GDFKVRVGMMNPFS 238
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+L L ++ + ++ LH+P+QS S +VL MNR + + ++ +
Sbjct: 239 VLPILDDLVDAFDSDKIFKLLHLPIQSASHSVLKKMNRLHKMDSVNEIITKFRARFEDLS 298
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + KRS
Sbjct: 299 LFTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVKRS 358
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
+L V E+ +G +GRV TEI ++ T Y V++ + G
Sbjct: 359 HQLHKVCEQIKIESKNEMIGWKGRVFVSKYTEIG----DVLTRTDSYRPVVISGSDLRPG 414
Query: 456 TSALVKITSVGRWSVFGEV 474
V+IT G+V
Sbjct: 415 QYDEVEITGAKPGYFLGKV 433
>gi|221222491|sp|O29021.2|AMTAB_ARCFU RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
Length = 424
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/393 (34%), Positives = 219/393 (55%), Gaps = 30/393 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC------ 114
+ ++T+GC+ NQ+DS+ M G LS G + E+A++ +IN+ +D K
Sbjct: 3 VAIETYGCTTNQADSDIMRGFLS--GEFELSSVEDAEVVIINSCGVIDFTERKIIRRMLD 60
Query: 115 -KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGH----EVRLLHR 169
K K +V+AGC+ + S++ + S + +D VV+ V L G E R + +
Sbjct: 61 LKREGKKVVLAGCLTRISKEALSVAD-SALSPDNLDMVVDAVYSALNGRKLFTERRFIDK 119
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ L ++R N + I+ I+ GCLG C++C TK ARG L S++++++V +
Sbjct: 120 AEFSHLKC-RLRENA-IAIVSISEGCLGKCSFCATKFARGRLRSFSMDAIVREAERAVRA 177
Query: 230 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
G +E+ L+S+DTGAYG D G LP LL I +E+ +G +R+GM NP + L E+
Sbjct: 178 GYREIQLTSQDTGAYGMDKGRAMLPELLRKI-SEI--EGEFRVRVGMMNPQHAVRMLDEL 234
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+Y FLH+PVQSG + +L M R +T+ D+ VV+ + I+TDII G
Sbjct: 235 INAYSSEKIYKFLHIPVQSGDNRILEDMKRNHTVEDYVEVVEAFRNSFDDVLISTDIIVG 294
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ET+E F ++ LIKE + V+I+++ R GTPAAR++ +P + K+RSR+LT +
Sbjct: 295 FPTETEEAFWKSYELIKETRPDIVNITRYSARKGTPAARLRDIPGWIKKERSRKLTDLMR 354
Query: 409 AFTPYLGME------GRVERIWITEIAADGIHL 435
+G+E G+ R+ +T+ +G +L
Sbjct: 355 K----IGLENNKRFVGKKLRVLVTKEGKNGRNL 383
>gi|289596431|ref|YP_003483127.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
gi|289534218|gb|ADD08565.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum boonei T469]
Length = 404
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 227/425 (53%), Gaps = 35/425 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI-------NTQSAMDTLIAK 113
+Y++ +GCS N +++ M GQ A G + EEAD+ LI +T++ M I +
Sbjct: 3 VYLEAYGCSQNIAETN-MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEE 58
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K K +VV GC+P ++L +++ V I + E+ E L L R +
Sbjct: 59 LKRYGKKIVVYGCLPSARKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMD 107
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ + V +PI GCLG CTYC T+ ARG + S + E ++ V+ + E
Sbjct: 108 EVFIWDA-----VATIPIANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVE 162
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+ +S++DT AYGRDIG L L+N+I A +P G LR+GM P L L E+ +
Sbjct: 163 IRISAQDTAAYGRDIGTELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYS 219
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+P VY FLH+PVQSG + +L MNR Y + DF +V + P M ++TDII GFPGE
Sbjct: 220 NPKVYKFLHLPVQSGDNEILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGEN 279
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--EAFT 411
DE F T+ LIKE K ++I++F PRP TPA + K+ + VK+ S++L ++
Sbjct: 280 DESFENTMKLIKEIKPEILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHK 339
Query: 412 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 471
+ M G+ ++ + G +L ++ Y V++ + ++G +++IT + +
Sbjct: 340 RFESMLGKEFKVIVPSRGKRGKYL-ARSQNYEPVVLDNA--VIGREYIIRITHYEKSHLV 396
Query: 472 GEVIK 476
G++++
Sbjct: 397 GKILE 401
>gi|20090019|ref|NP_616094.1| 2-methylthioadenine synthetase [Methanosarcina acetivorans C2A]
gi|19914987|gb|AAM04574.1| 2-methylthioadenine synthase [Methanosarcina acetivorans C2A]
Length = 435
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 226/439 (51%), Gaps = 31/439 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE--EADIWLINTQSAMDT----LIAKC 114
+Y+++FGCS + + +E M + G+ L + + EA++++ N+ + T ++ K
Sbjct: 3 VYLESFGCSASLASAEIMKASVERLGHELLNPAAAGEAEVYICNSCTVKYTTEQKILYKI 62
Query: 115 KSAKKP---LVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVV--------EETLKG 161
+S + ++V+GC+P Q L I+GV I R+ E++ E G
Sbjct: 63 RSMGEKGVQVIVSGCMPEVQLEEILHANPEAHILGVNAISRLGELLSSIEQRRMEGLPAG 122
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ L + L L++P+ R N + I I+ GC AC+YC KHARG L S+ E +V
Sbjct: 123 GHLELRTSEPLGFLNVPRERSNPNIHICQISQGCNFACSYCIVKHARGKLRSFPPEKIVK 182
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R+ +ADG +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRSAVADGCREIWLTSQDDSQYGMDTGVKLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
L L + + V+ LH+P+QS S +VL MNR + + ++ + +
Sbjct: 240 LPILDGLVDAFDSDKVFKLLHLPIQSASHSVLKKMNRLHKMDAVDEIITKFRARFEDLSL 299
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
TDII GF ETDEDF +T+ +K+Y+ +++IS++ PRP T A + + S + +RS
Sbjct: 300 FTDIIVGFCDETDEDFEETIEWVKKYRPEKINISRYSPRPHTKAFSFRNLDSRISVQRSH 359
Query: 402 ELTSVFEAF-----TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
EL V E +G +GRV TEI ++ T Y V++ + G
Sbjct: 360 ELHKVCEQIKLGSKQEMIGWKGRVFVSKYTEIG----DVLTRTDAYRPVVISGSDLKPGE 415
Query: 457 SALVKITSVGRWSVFGEVI 475
A V+IT G +I
Sbjct: 416 YANVEITGAKPGYFLGRII 434
>gi|327400612|ref|YP_004341451.1| MiaB family RNA modification protein [Archaeoglobus veneficus SNP6]
gi|327316120|gb|AEA46736.1| RNA modification enzyme, MiaB family [Archaeoglobus veneficus SNP6]
Length = 417
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 206/354 (58%), Gaps = 14/354 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKS 116
+ ++T+GC+ NQ+DS+ + ++S + L+ + E+AD+ +IN+ +D ++ + +
Sbjct: 3 VAIETYGCTMNQADSDIIRAEVSR-EFELS-SVEDADVVVINSCGVIDYTERKILNRARQ 60
Query: 117 AK---KPLVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ K +V+AGC+P+ + + E+ +I + R+ EV++ + G+++ LL + ++
Sbjct: 61 LRQMGKTVVMAGCLPRIAKKKVMEVANAAI-SPDNVHRIDEVIKAAVSGNKLFLLDKSEI 119
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
K R + I+ I GC G CT+C T+ ARG L S++ + +V ++ + G
Sbjct: 120 DKTRCEKQRMAGGIAIVSIAEGCTGRCTFCATRFARGRLRSFSPDGIVEEIKKAVRAGYV 179
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ L+S+DTGAYG DIG NLP LL I A +G +R+GM NP L ++
Sbjct: 180 EIQLTSQDTGAYGHDIGTNLPDLLEKISA---IEGMFRVRVGMMNPRHAYSMLDDLLNAF 236
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
+Y FLH+PVQSG + VL M R++ + ++ VV + + I+TDII GFP E
Sbjct: 237 ESEKIYKFLHLPVQSGDEKVLRDMGRDHGVEEYEEVVSAFRKRFDDVMISTDIIVGFPTE 296
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
++E F ++++L++ + V+++++ PR GTPA R++ +P + K RSR +T +
Sbjct: 297 SEEAFYKSLDLVRRTRPDLVNVTRYSPRKGTPAFRLRDMPDWIKKDRSRAVTRL 350
>gi|261403097|ref|YP_003247321.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
gi|261370090|gb|ACX72839.1| MiaB-like tRNA modifying enzyme [Methanocaldococcus vulcanius M7]
Length = 414
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 227/425 (53%), Gaps = 24/425 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++ +GC N +D+E + L G+ + D + AD+ +INT ++ M I +
Sbjct: 4 VYVEGYGCVLNSADTEIIKNALREEGFEIVDELDRADVAVINTCVVRLETENRMIYRINE 63
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLK-GHEVRLLHRKKL 172
K+ K +VVAGC+P+ ++ +++G + ++ + ++++ +K G V L K
Sbjct: 64 LKNLGKDVVVAGCLPKALKE--KVKGFLHIYPREAHKAGKILKIYIKSGKRVEGLEDDKS 121
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
L + + + LPI GCLG CTYC K ARG+L SY E +V + +I G K
Sbjct: 122 LHKKLDYIT-SSLITPLPICEGCLGHCTYCIVKIARGNLISYPREKIVKKAEELIKKGTK 180
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
++++++DT YG D NL LLN + +G ++R+GM + + E + E+ EV
Sbjct: 181 CIFITAQDTACYGFDRNDNLANLLNDLC---NIEGDFIMRVGMMHAKNVEEIIDELIEVY 237
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
+ V FLH+P+QSG D +L M R YT+ +F+ +V+ + V + TDII GFPGE
Sbjct: 238 KTDKVGKFLHLPLQSGDDEILKKMRRGYTVDEFKEIVNEFRKKVKNLCFTTDIIVGFPGE 297
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
T+E F T+N++KE K +H +++ R GT AA+MK+V + + K+RS L + +
Sbjct: 298 TEEQFENTLNILKELKPDYIHGAKYSQRKGTEAAKMKQVDTKIRKQRSEILDKLRRELS- 356
Query: 413 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQ--VLVPSTGNMLGTSALVKITSVGRWSV 470
Y+ + + + T I +G KGY + +V G +G VKI + +
Sbjct: 357 YINNKKYIGKKLKTLILEEG-------KGYTENFKVVKFEGGSIGNFKKVKIVDAKTFGL 409
Query: 471 FGEVI 475
G++I
Sbjct: 410 VGKII 414
>gi|332797846|ref|YP_004459346.1| MiaB family RNA modification protein [Acidianus hospitalis W1]
gi|332695581|gb|AEE95048.1| RNA modification enzyme, MiaB family [Acidianus hospitalis W1]
Length = 417
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 140/428 (32%), Positives = 229/428 (53%), Gaps = 26/428 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-------MDTLIAK 113
+Y +T+GC+ N+ D+ M L + + +N EAD+ ++NT M + I +
Sbjct: 3 VYFETYGCALNKGDTYIMMTLLKQRNHEIVNNPNEADVIVLNTCDVRLETGERMKSRIKE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEG--VSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
+ K LVVAGC + + SI+G Q + ++++ VE G ++ ++ ++
Sbjct: 63 LRKFGKKLVVAGCFSGAEPGVVKTLAPEASIIGPQALTKIIDAVE----GEKIFSINAER 118
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P+V K + I+PI GC G C++C TK AR L SY++ S+V V+ + +G
Sbjct: 119 SEIT--PRVFEGK-IAIIPIADGCAGDCSFCITKLARRTLRSYSMRSIVEAVKEAVKNGA 175
Query: 232 KEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
EV L+ +D AYG D+G + L LLN + L +G M+RIGM P + I
Sbjct: 176 VEVELTGQDAAAYGLDLGGKIKLSDLLNEV---LSIEGDFMIRIGMMTPEQFARDIDGIL 232
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
E +R+P ++ FLH+PVQSG D VL MNR+YT+ +++ +V +P + I TDII G
Sbjct: 233 EAMRNPKLFKFLHLPVQSGDDNVLKLMNRKYTVDEYKELVKEARSKIPNINITTDIIIGH 292
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
PGE + F T+ L+KE KF +VH++ + RP T +A MK+VP +V K+R R ++E
Sbjct: 293 PGEDENAFENTLELMKEIKFERVHLAMYSIRPNTRSALMKQVPDSVKKERMRIAYKLYED 352
Query: 410 FTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467
+ + E + ++ TE G ++G T Y+ V++ G +G V+I
Sbjct: 353 ISLSIHKEYLNKRTKVITTEEGKKG-SIIGRTLNYIPVIL--NGVEIGKWYDVEIIDYSF 409
Query: 468 WSVFGEVI 475
+ + G V+
Sbjct: 410 FDLRGTVV 417
>gi|432328224|ref|YP_007246368.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
gi|432134933|gb|AGB04202.1| MiaB-like tRNA modifying enzyme [Aciduliprofundum sp. MAR08-339]
Length = 386
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 205/383 (53%), Gaps = 30/383 (7%)
Query: 102 NTQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 161
+T++ M I + + K +VV GC+P R+L E +G+ + + +R
Sbjct: 29 HTENRMLRRIKELRRYGKDIVVYGCLPSARRELLE-DGLIPITTWEFER----------A 77
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
HE +L +K P + +V V +PI GCLG CTYC TK ARGH+ S VE ++
Sbjct: 78 HE--MLDLRKSP---MDQVFLWDAVATIPIANGCLGKCTYCITKIARGHIKSRPVEWIIS 132
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
RV+ + G E+ LS++DT AYGRDIG NL L+N I + DG +RIGM P
Sbjct: 133 RVKDALNMGAVEIRLSAQDTAAYGRDIGTNLAELVNLITS---LDGRFYVRIGMMEPRET 189
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
LE + E+ E + VY FLH+PVQSG D +L MNR YT DF ++ + +P + I
Sbjct: 190 LEIIDELIESYKSSKVYKFLHIPVQSGDDRILRRMNRGYTAEDFERIIGEFRKKIPDITI 249
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
+TD+I GFPGETDE F T+++I+ K ++I++F PRP TPA K+ + VK+ S+
Sbjct: 250 STDVIVGFPGETDETFANTLDMIQRLKPDILNITRFSPRPKTPAYGWKRPSTNKVKEWSQ 309
Query: 402 ELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
+T + E Y+ E V + + + + Y+ ++V +G
Sbjct: 310 RVTDLHLRNMEERMKSYVDREMEV----VVPSRGKRGNFLARSSNYLPIVVKDAE--IGG 363
Query: 457 SALVKITSVGRWSVFGEVIKILN 479
L+KI+ + + G++++ LN
Sbjct: 364 FYLLKISGFEKAHLKGKIVERLN 386
>gi|15669058|ref|NP_247862.1| hypothetical protein MJ_0867 [Methanocaldococcus jannaschii DSM
2661]
gi|2501543|sp|Q58277.1|AMTAB_METJA RecName: Full=Probable threonylcarbamoyladenosine tRNA
methylthiotransferase; AltName: Full=tRNA-t(6)A37
methylthiotransferase
gi|1591550|gb|AAB98872.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 427
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/429 (31%), Positives = 226/429 (52%), Gaps = 30/429 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++ +GC N +D+E + L G+ + +N EEADI +INT ++ M I +
Sbjct: 14 VYVEGYGCVLNTADTEIIKNSLKKHGFEVVNNLEEADIAIINTCVVRLETENRMIYRINE 73
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K+ K +VVAGC+P+ ++ +++G + ++ + E+++ ++ H +R
Sbjct: 74 LKNLGKEVVVAGCLPKALKN--KVKGFLHIYPREAHKAGEILKNYVEKH-----YRMPYI 126
Query: 174 ALDLPKVRRNKF-------VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
D+ K K + LPI GC+G C+YC K ARG L SY E +V + + +
Sbjct: 127 EEDINKTLYKKLDYLKPSLITPLPICEGCIGNCSYCIVKIARGGLISYPREKIVNKAKEL 186
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
I G K + ++++DT YG DIG NL LLN + G ++R+GM + L
Sbjct: 187 INKGAKCLLITAQDTACYGFDIGDNLANLLNELT---QIKGEFIMRVGMMHAKNAELILD 243
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E+ EV ++ V FLH+P+QSG D +L M R YT+ +F+ +V+ + + TDII
Sbjct: 244 ELIEVYQNEKVGKFLHLPLQSGDDEILKRMKRGYTVDEFKDIVNEFRRKIKNLCFTTDII 303
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSV 406
GFPGET+E F T+ +++E K +H +++ R GT AA+MK++ + + K+RS L +
Sbjct: 304 VGFPGETEEQFQNTLEVLRELKPDYIHGAKYSQRKGTEAAKMKQIDTKIRKRRSEILDKL 363
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVG 466
+ YL + + + + +G G+T + +V G +G VKIT
Sbjct: 364 RRELS-YLNNKKYIGKAMKVLVLDEG---KGYTDNF--KVVKFEGGEVGEFRKVKITDAK 417
Query: 467 RWSVFGEVI 475
+ + GE+I
Sbjct: 418 TFGLKGELI 426
>gi|448407296|ref|ZP_21573684.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
gi|445675632|gb|ELZ28161.1| MiaB-like tRNA modifying enzyme [Halosimplex carlsbadense 2-9-1]
Length = 418
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 228/432 (52%), Gaps = 36/432 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + +
Sbjct: 5 HIETYGCTANRGESRQIERSLRDGGHHPADGPEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 116 SAKKP--LVVAGC--VPQGSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRK 170
A+ P LVV GC + QG +E + V D V E V + E
Sbjct: 65 DAETPADLVVTGCMALAQG----EEFAAADLDAEVLHWDEVPEYV----RNGECPTTTPD 116
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TKHA G + S +VE + + R ++ G
Sbjct: 117 TEPVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENLEKARALVHAG 169
Query: 231 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
+E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+A
Sbjct: 170 AREIRITGQDTGVYGWDEGERKLHVLLDRICTEI--EGEFRVRVGMANPKGVHGIREELA 227
Query: 290 EVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
EV H +Y+FLH PVQSGSD VL M R++ +S++ VV+T + + ++TD I G
Sbjct: 228 EVFAAHDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDYLDEWTLSTDFIVG 287
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ETD DF Q++ L++E + ++++++F RPGT AA MK + V K+RS+ ++ +
Sbjct: 288 FPTETDRDFEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKM 347
Query: 409 AFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM---LGTSALVKIT 463
Y M G V + +TE D LVG+ + Y QV +P N LG + ++T
Sbjct: 348 DVMDEVYESMVGDVRSVLLTEDGTDD-SLVGYDRAYRQVAIPDAQNQGVELGDTVDAEVT 406
Query: 464 SVGRWSVFGEVI 475
GE++
Sbjct: 407 GHNTVYALGELV 418
>gi|188996756|ref|YP_001931007.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium sp. YO3AOP1]
gi|229891027|sp|B2V930.1|MIAB_SULSY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|188931823|gb|ACD66453.1| RNA modification enzyme, MiaB family [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 437
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 151/439 (34%), Positives = 232/439 (52%), Gaps = 31/439 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
Y+KTFGC N +DSE MAG L GY T+N EEAD+ L+NT S + + + +
Sbjct: 3 FYIKTFGCQMNVNDSEKMAGILQTLGYTPTENWEEADVILVNTCSVREKPDQKVLSALGE 62
Query: 114 CKSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-V 164
K KK + V GC+ Q G ++ + IV G I + ++EE G++ +
Sbjct: 63 FKKVKKHNPNAVIGVCGCLAQRAGYEIYQKAPFIDIVFGTTNIHHLPNLLEEAKSGNKAI 122
Query: 165 RLLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 123 EILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGRERSRRIGDILR 182
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
V+ ++ DGVKE+ L ++ AYG+D G V LL A VAE+ DG +R +P
Sbjct: 183 EVQYLVEDGVKEIHLIGQNVTAYGKDFGDVKFWELLKA-VAEV--DGVERIRFTTGHPRD 239
Query: 281 ILEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ E +K +A++ P + LH+P+Q+GSD +L AM+R YT ++ ++ L + +P +
Sbjct: 240 LDEDTIKVMADL---PQICEALHLPIQAGSDRILQAMDRGYTQKEYLQKIELLKKYIPNI 296
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKK 398
++TDII GFPGET ED+ +TV +IKE ++ QV ++ PRPGTPAA + S + K
Sbjct: 297 ALSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADLPMTESPEELSK 356
Query: 399 RSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
R +L ++ + F L + ++ I + EI + LVG T+ V + LG
Sbjct: 357 RLNDLINLQKDITFKKNLEYQDKIVEILVEEINQEN-KLVGRTRTNKLVYAEGSPEYLGK 415
Query: 457 SALVKITSVGRWSVFGEVI 475
VKI V R+S+ G +I
Sbjct: 416 LVNVKIEKVNRFSLEGSII 434
>gi|16081399|ref|NP_393736.1| hypothetical protein Ta0256 [Thermoplasma acidophilum DSM 1728]
gi|10639399|emb|CAC11401.1| hypothetical protein [Thermoplasma acidophilum]
Length = 401
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 206/397 (51%), Gaps = 36/397 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
IY + +GC+ NQ ++ +L + G L +EADI +I T Q D ++ + +
Sbjct: 3 IYYEGYGCTLNQGETGLYVNKLLSEGSVLVSRPDEADISIIGTCAVIQKTEDHMLKRIEE 62
Query: 117 AKK--PLVVAGCVPQGSRDLKELEGVSIVG--VQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ + V GC L ++G I G ++ IDR +E +
Sbjct: 63 LSRLGRVKVIGC-------LSAIKGSEISGGNIEAIDR-----------NEFQQFQE--- 101
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
L+ + + + +PIN GC G C +C + ARG L S E +V ++R ++A G +
Sbjct: 102 -YLEDTSIIDAEIMSGIPINQGCTGKCNFCISHIARGKLVSRRPEKIVNQIRMMVAAGKR 160
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ +SS DT AYG+D G LP L+ I A DG MLR+GM P +E L ++ E
Sbjct: 161 EIRISSLDTAAYGKDTGYRLPSLIKDITA---VDGDFMLRVGMMEPRNTIEILDDLLEAY 217
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
P V+ FLH+PVQSG D VL+AMNREYT+ +F ++++ + P M I+TD+I G+ E
Sbjct: 218 DDPKVFKFLHIPVQSGDDRVLTAMNREYTVDEFMQIIESFRKRFPDMTISTDVIIGYHAE 277
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
D F+ T +LI++ + +++++F PR TP + P+ V+K + R + +
Sbjct: 278 NDRSFDLTCDLIRKVQPEIINVTRFSPRELTPDFEHRPRPTNVLKDQDRTMAEIHRKIVS 337
Query: 413 --YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
+ + G+VERI ITE G +VG Y V++
Sbjct: 338 ERFSALVGKVERILITEDGKPGT-MVGRDASYRPVVI 373
>gi|449066971|ref|YP_007434053.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
gi|449035479|gb|AGE70905.1| hypothetical protein SacN8_04670 [Sulfolobus acidocaldarius N8]
Length = 402
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/411 (34%), Positives = 215/411 (52%), Gaps = 23/411 (5%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAK-KPLVVAGCVPQ 129
M L G+ + DN ++A+I +INT + M I + K K LVVAGC+
Sbjct: 1 MMTLLRDKGHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLAS 60
Query: 130 GSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVE 187
+ S++G Q + ++V+VVE + K +V L K L PKV K +
Sbjct: 61 AEPAVVVSLAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IA 115
Query: 188 ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD 247
ILPI GC G C +C TK AR L SY +V VR + G E+ LS +DT AYG D
Sbjct: 116 ILPIADGCAGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLD 175
Query: 248 IGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 306
+G I L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQ
Sbjct: 176 LG---QIKLSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQ 232
Query: 307 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366
SG D VL MNR+YT+ +++ +V + + VP + I TDII G PGE + F T+ L+++
Sbjct: 233 SGDDNVLKLMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRD 292
Query: 367 YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIW 424
KF ++H++ + RP T +A MK+VP V K+R + ++E A+ + + +
Sbjct: 293 IKFERIHLAMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEELAYEIHSDYLNSIASVI 352
Query: 425 ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
TE G ++G T Y+ V++ LG V+I + + GE I
Sbjct: 353 TTEYGRKG-SVIGRTLNYIPVVIRQNVE-LGKRINVRINEASFYDLRGEPI 401
>gi|449069243|ref|YP_007436324.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
gi|449037751|gb|AGE73176.1| hypothetical protein SacRon12I_04660 [Sulfolobus acidocaldarius
Ron12/I]
Length = 401
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 213/403 (52%), Gaps = 23/403 (5%)
Query: 86 GYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAK-KPLVVAGCVPQGSRDL--K 135
G+ + DN ++A+I +INT + M I + K K LVVAGC+ +
Sbjct: 8 GHEIVDNIQDAEILVINTCAVRLETEERMKQRIKELKKYNDKRLVVAGCLASAEPAVVVS 67
Query: 136 ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGC 195
S++G Q + ++V+VVE + K +V L K L PKV K + ILPI GC
Sbjct: 68 LAPEASVIGPQSVQKIVDVVENS-KQRQVYLNEDKPLIT---PKVFDGK-IAILPIADGC 122
Query: 196 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL 255
G C +C TK AR L SY +V VR + G E+ LS +DT AYG D+G I
Sbjct: 123 AGDCNFCITKLARRKLRSYPPHLIVESVRDAVRKGAVEIELSGQDTAAYGLDLG---QIK 179
Query: 256 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 314
L+ +V ++ +G M+RIGM P + + I EVLR VY F+H+PVQSG D VL
Sbjct: 180 LSDLVRKVTEVEGDFMIRIGMMTPEQAMRDIDGIIEVLRETKVYKFIHLPVQSGDDNVLK 239
Query: 315 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374
MNR+YT+ +++ +V + + VP + I TDII G PGE + F T+ L+++ KF ++H+
Sbjct: 240 LMNRKYTVDEYKDLVKEIRKKVPIVNITTDIIIGHPGEDENAFRNTLELMRDIKFERIHL 299
Query: 375 SQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADG 432
+ + RP T +A MK+VP V K+R + ++E A+ + + + TE G
Sbjct: 300 AMYSIRPNTRSASMKQVPDPVKKERIQIANKLYEELAYEIHSDYLNSIASVITTEYGRKG 359
Query: 433 IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
++G T Y+ V++ LG V+I + + GE I
Sbjct: 360 -SVIGRTLNYIPVVIRQNVE-LGKRINVRINEASFYDLRGEPI 400
>gi|124485405|ref|YP_001030021.1| hypothetical protein Mlab_0580 [Methanocorpusculum labreanum Z]
gi|124362946|gb|ABN06754.1| MiaB-like tRNA modifying enzyme [Methanocorpusculum labreanum Z]
Length = 416
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 222/439 (50%), Gaps = 63/439 (14%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
++Y +T+GC++N D+E + G ++EEAD LINT +D
Sbjct: 16 SLYTETYGCTYNAGDTEKLMEIARNQGCVPASSAEEADAILINTCVVIDKTEQHMYERLD 75
Query: 117 --AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
A K L V GC+P + D+ R + P
Sbjct: 76 LYAGKLLFVTGCLPPVAADVL---------------------------------RTRYPK 102
Query: 175 LDL--PKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + P + + ++E+ L I GC G CTYC T+ ARG L S++ E +V +
Sbjct: 103 IHIIDPALIHSCYMEVGTAHVGTNAVLQIARGCNGHCTYCITRLARGKLVSFSAEDIVRQ 162
Query: 223 VRTVIADGVKEVWLSSEDTGAYG--RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
++++ G E+ L+++DT ++G R+ G+ LP LL + A +P G+ M+RIGM NP
Sbjct: 163 AKSIVEAGATEIQLTAQDTSSWGLDRNDGLRLPDLLRQLCA-IP--GNFMIRIGMANPDT 219
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+L L + + L+ P ++ FLH+PVQSGSD+VL M R YT + + + + P ++
Sbjct: 220 LLPILDDFLDALKDPKIFLFLHIPVQSGSDSVLRLMGRRYTSAQYEEICQRARKAFPEIR 279
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
I+TD I GF GETDED ++ I+ + +V+I++F RP TPAA+MKK+P + K+RS
Sbjct: 280 ISTDYIAGFSGETDEDAAKSAEQIRRTRPGKVNITRFSVRPNTPAAKMKKIPEPIKKQRS 339
Query: 401 RELTS----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
RELT V++A + G + +TE+ G + + Y +++ +GT
Sbjct: 340 RELTDAANEVYDANNE--ALIGHIMTAVVTEVVKAG-SVTARDRTYQNIVIMENLE-IGT 395
Query: 457 SALVKITSVGRWSVFGEVI 475
VKIT R + GE I
Sbjct: 396 EITVKITGHRRHYLIGERI 414
>gi|253742055|gb|EES98909.1| tRNA 2-methylthioadenosine synthase [Giardia intestinalis ATCC
50581]
Length = 525
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 176/317 (55%), Gaps = 23/317 (7%)
Query: 178 PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV-KEVWL 236
P R N ++I+ GC+G+CTYCKT H+RG L S +++L+ R+R+ +AD V +E+WL
Sbjct: 200 PIHRANPIIDIIATGSGCMGSCTYCKTCHSRGRLRSVPLDTLLARIRSSLADPVIRELWL 259
Query: 237 SSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNPPFILEHLKEIAEVLRH 294
+ EDT A+GRD G LL I L + T ML+IGMT+P ++ + ++
Sbjct: 260 TGEDTLAWGRDSGTTFAALLQEIQKLLETENPTHKMLKIGMTDPDSVINQEDSLISFMQC 319
Query: 295 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 354
VY FLH+PVQSGSD +L+ M R Y + F L +P + + TDIICGFPGETD
Sbjct: 320 KYVYKFLHLPVQSGSDRILTLMRRHYDIGTFLASCSKLQSAIPDLCLDTDIICGFPGETD 379
Query: 355 EDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
ED Q++NL + +F V+I+Q+Y R TPAA M++VP++ ++R+RE++ V +
Sbjct: 380 EDHAQSLNLFRNLSKDAPRFQVVNITQYYARKNTPAASMEQVPASKKRERTREMSEVVKG 439
Query: 410 FTPYLGMEGRVERIWITEIAADGIHLVGHTKGY-----------VQVLVPSTGNMLGTSA 458
G+V I + E + GH + Y +++ + LGT
Sbjct: 440 SFRRDQYHGQVHDIMVLE----KLQTEGHGRKYGGKTYNNITVAIEIDDQAASLELGTYV 495
Query: 459 LVKITSVGRWSVFGEVI 475
V+I + ++ G VI
Sbjct: 496 RVRIIGSTKVALIGLVI 512
>gi|302348200|ref|YP_003815838.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
gi|302328612|gb|ADL18807.1| hypothetical protein ASAC_0400 [Acidilobus saccharovorans 345-15]
Length = 437
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 146/438 (33%), Positives = 224/438 (51%), Gaps = 29/438 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDTLIAKCKS 116
T Y++T+GC+ ++ DSE M L GY + EAD+ ++NT + +DT K
Sbjct: 8 TTKYYIETYGCALSEFDSEIMRSILRGAGYEECKDPREADVIIVNTCAVRLDTEAKIVKR 67
Query: 117 AK---------KPLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
K K LVV+GC+ + S L+ S+V Q + R+++ V TL
Sbjct: 68 LKELNGLSLQGKKLVVSGCLSKARPSLILRTAPAASLVSPQNVTRILDAV--TLDRPIYM 125
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
L + + L P R + V + I+ GCL C++C+TK AR +L SY ++V VR
Sbjct: 126 LDGERDVNFLPKPPTRDS--VATVMISEGCLENCSFCETKLARRYLKSYPPRAIVSIVRD 183
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G +E+ L+ +D AYG D+ LP L+ I+ ++P G LRIGM P +E
Sbjct: 184 LVQGGAREIRLTGQDAAAYGVDLPGKPRLPDLIADILDKVP--GEYRLRIGMMTPNQAME 241
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ ++ +V R V+ F H+PVQSG D VL MNR YT+++F+ + + P AT
Sbjct: 242 IIDDLLDVYRDGRVFKFFHIPVQSGDDRVLKIMNRRYTVAEFKELHSKVKAKYPSSLFAT 301
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 403
DII G PGE + F +V L++E KF +V+++Q+ RP T +A M +VP V K+RS +
Sbjct: 302 DIIVGHPGEDEGAFMNSVRLVEELKFERVYLAQYSIRPRTASASMPQVPEPVKKERSLRI 361
Query: 404 TSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTS 457
V E + Y+G GR + + +G V Y V VP ST G
Sbjct: 362 QEVIKKIGVEIYGSYVG--GRFRGLLASRGFREGFSTV-RLDNYFPVAVPASTLRSYGEF 418
Query: 458 ALVKITSVGRWSVFGEVI 475
VKIT + + G ++
Sbjct: 419 VDVKITGATYFDLRGVIV 436
>gi|429217568|ref|YP_007175558.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
gi|429134097|gb|AFZ71109.1| MiaB-like tRNA modifying enzyme [Caldisphaera lagunensis DSM 15908]
Length = 447
Score = 204 bits (520), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 224/433 (51%), Gaps = 23/433 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDT---LIAKCKSA 117
Y++TFGC+ ++ DS M LS GY T+ +ADI ++NT + +DT ++ +
Sbjct: 17 YIETFGCALSEFDSSTMDSILSQNGYVKTEYPNDADIIIVNTCAVRLDTEAKIMKRLNEI 76
Query: 118 KK-----PLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH-R 169
K L+V+GC+ + + + S+V Q ++++VV+ ++V L+
Sbjct: 77 KNYYGNARLIVSGCLAKARPSFISRVVPNASLVSPQNSTKILDVVKSE---NKVVLIEGN 133
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ + P + + V + I GC+ C++C TK AR L SY ++ ++ ++
Sbjct: 134 RDTDFMPTPPIEDS--VATIMIEEGCVDNCSFCITKLARQTLKSYKPRVILDTIKKLVEK 191
Query: 230 GVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
GVKE+ L+ +D AYG D L L+N I+ ++ G +RIGM P +E +
Sbjct: 192 GVKEIRLTGQDIAAYGLDFNPKFRLDELINIILDKIK--GEYRIRIGMMTPDKSIEIIDN 249
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ E+ + ++ F H+PVQSG + +L MNR Y++ +++ + + + P ATDII
Sbjct: 250 LLELYKDERIFKFFHIPVQSGDNNMLKIMNRNYSIEEYKYLHNKIKSKYPNSLFATDIIV 309
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G PGE +E F TV L+KE +F +V+++Q+ RP T AA M++VP + KKRS L V
Sbjct: 310 GHPGENEEAFQNTVKLVKELRFERVYLAQYSIRPRTKAASMEQVPEVIKKKRSLMLNKVI 369
Query: 408 EAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSV 465
+ Y G+ + IT ++VG Y V + ++G ALV+I
Sbjct: 370 KEIEEEIYKNYIGKTYEVLITTHGFRENYVVGRLNNYFPVAIKGGDELIGKMALVRINKA 429
Query: 466 GRWSVFGEVIKIL 478
+ + GEVI+ L
Sbjct: 430 TYFDLRGEVIEEL 442
>gi|225850314|ref|YP_002730548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Persephonella
marina EX-H1]
gi|225646637|gb|ACO04823.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Persephonella marina
EX-H1]
Length = 438
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 151/441 (34%), Positives = 235/441 (53%), Gaps = 32/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
Y++TFGC N +DS+ MAG L GY + E+ADI L+NT S + K SA
Sbjct: 5 YIRTFGCQMNINDSQKMAGMLKTLGYEPARDWEDADIILVNTCSVREKPDQKVLSALGEF 64
Query: 118 -----KKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 165
KKP + V GC+ Q G L++ V +V G I + +++EE L+G++ V
Sbjct: 65 KKIKNKKPDAVIGVCGCLAQRAGYEILQKAPFVDMVFGTTNIHHLPKLLEEALQGNKAVE 124
Query: 166 LLHRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+L +L P VR N++ + + GC CTYC + RG S + ++
Sbjct: 125 ILEDIDQNETELDKYPTVRENRYTAYVTVMRGCDKKCTYCIVPYTRGKERSRRIGEILQE 184
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
V+ +I DGVKE+ L ++ AYG+D+G V LL A VA++ +G +R +P +
Sbjct: 185 VQWLIDDGVKEIHLIGQNVTAYGKDLGDVRFVDLLYA-VADV--EGVERIRFTTGHPRDL 241
Query: 282 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E +K +AE+ P + LH+P+Q+GSD +L AM R YT ++ ++ L + +P +
Sbjct: 242 DEETIKAMAEI---PQICEHLHLPIQAGSDRILKAMERGYTQKEYLEKIELLKKYIPDIS 298
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR--MKKVPSAVVKK 398
++TDII GFPGET ED+ +T+ ++KE ++ QV ++ PRPGTPAA+ M + P + K
Sbjct: 299 LSTDIIVGFPGETYEDYMETIKVLKEVEYDQVFAFKYSPRPGTPAAQMPMTEDPKTLSKW 358
Query: 399 RSRELTSVFE-AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ + E F L EG+ + + E VG T+ V + N+LG
Sbjct: 359 LNDLILMQKEITFKKNLQYEGKTVEVLVEEEKEG--RFVGRTRTNKLVHIEGRNNLLGEI 416
Query: 458 ALVKITSVGRWSVFGEVIKIL 478
VK+T V R+S+ GE I+ L
Sbjct: 417 VDVKVTKVNRFSLEGEAIEQL 437
>gi|171186225|ref|YP_001795144.1| RNA modification protein [Pyrobaculum neutrophilum V24Sta]
gi|170935437|gb|ACB40698.1| RNA modification enzyme, MiaB family [Pyrobaculum neutrophilum
V24Sta]
Length = 415
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 146/436 (33%), Positives = 231/436 (52%), Gaps = 44/436 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
IY++T+GC ++D+E + +L G D+ EEAD+ L+ T + + I +
Sbjct: 4 IYVETYGCWLAKADAEVVRQRL---GLERADSPEEADLVLVYTCAVREDGEVRQLARIRE 60
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ +VVAGC+ + L+ S ++ + ++G R + R
Sbjct: 61 LAGLGRRMVVAGCLAR----LRPYTVKSAAPGAEL-----LYPSQVEGGREREMRR---- 107
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 230
LP+ V + P+ VGCLG CT+C TK+ RG G S + + +V VR +A G
Sbjct: 108 ---LPRYE-GGVVYVAPLQVGCLGNCTFCATKYTRGGAGYVRSASPDDVVAHVREAVARG 163
Query: 231 VKEVWLSSEDTGAYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+EV+L+ +D YG D G NLP LL I+ E+ +G +RIGM+ P +
Sbjct: 164 AREVYLTGQDVITYGFDAGWRGGWNLPDLLERILREV--EGDYRVRIGMSEPWVFAKFAD 221
Query: 287 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
++ +V+ R VY + H+PVQSGSD VL AM R YT+ ++R +V + + IATDI
Sbjct: 222 QLLDVVKRDGRVYRYFHLPVQSGSDRVLRAMGRRYTVGEYRELVRKIRRELGDAFIATDI 281
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGE +E+F ++V L++E KF +VH+++F PRP T AA M ++VP A K+RS+ L+
Sbjct: 282 IVGFPGEAEEEFVESVKLVEELKFDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 341
Query: 405 SVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALV 460
V E GR E + + E+ D +VG Y QV+V + ++G V
Sbjct: 342 EVAARVALLRNGERVGRREVVLVDEV--DHGLVVGRASDYRQVVVKRGAGDELMGRFVDV 399
Query: 461 KITSVGRWSVFGEVIK 476
+I G ++GE+++
Sbjct: 400 RIAGAGPVYLYGEILE 415
>gi|397780037|ref|YP_006544510.1| methylthiotransferase [Methanoculleus bourgensis MS2]
gi|396938539|emb|CCJ35794.1| Putative methylthiotransferase AF_1247 [Methanoculleus bourgensis
MS2]
Length = 448
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 141/427 (33%), Positives = 216/427 (50%), Gaps = 39/427 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAK----- 113
+ +Y++++GC++N +D+ + L G LT +EAD +INT + + K
Sbjct: 42 KKVYIESYGCTYNHADARRLEAILEGLGCRLT-GPDEADAVIINTCTVIGATERKMLRRL 100
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
A + L V GC+P R+L + V V D + HE +
Sbjct: 101 AAFADRDLYVTGCMPLVQREL--INSVCTAHVIHPDEI----------HE-------RAS 141
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ P + ++ + GC+G C+YC T+ ARG L S E ++ VR ++ G E
Sbjct: 142 GVGSPGA---GAIGVVQVASGCVGRCSYCITRLARGRLKSAPPEEILDAVRRLVRSGAFE 198
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+ L+ +D A+G D G LP LL AI E+P G +R+GM +P +L L + +
Sbjct: 199 IQLTGQDVAAWGLDRGEALPDLLQAIT-EIP--GRFAVRLGMMHPAPVLRILDPLIDAYA 255
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
++ FLH+PVQSGSDAVL M R Y +D +VD E P M I++D I GFPGET
Sbjct: 256 SEKMFRFLHLPVQSGSDAVLERMQRGYRAADVIRIVDAFRERYPDMMISSDFITGFPGET 315
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----VFEA 409
DE+F QT++L++ F +V+I+++ RPGTPAA +K +P + K RSR L + +++
Sbjct: 316 DEEFRQTLDLLRRAAFVKVNITRYSRRPGTPAAALKDLPERIRKDRSRALLAEANRIYDR 375
Query: 410 FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 469
+ GR I TE A G V Y+ V++ LG S IT R
Sbjct: 376 YNER--WMGRETSIVATEKNAPG-STVCRNPCYLNVVI-KEDLPLGFSGRAVITRNRRHY 431
Query: 470 VFGEVIK 476
V GE+++
Sbjct: 432 VIGELVQ 438
>gi|156938206|ref|YP_001436002.1| RNA modification protein [Ignicoccus hospitalis KIN4/I]
gi|156567190|gb|ABU82595.1| RNA modification enzyme, MiaB family [Ignicoccus hospitalis KIN4/I]
Length = 423
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 190/358 (53%), Gaps = 16/358 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI-------NTQSAMDTLIAK 113
IY +T+GC+ ++E + +L + GY + EEAD +I T+ M I +
Sbjct: 3 IYYETYGCAVMLGEAERVLEELKSKGYEVVGRPEEADASIIFTCTVRSETEQRMAWRIKE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKEL--EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
A K L+V GC+ L ++ SIV + + E LKG + LL ++
Sbjct: 63 LCKASKKLIVTGCLASAQPGLVKMVCPRASIVSNSSLHEI----ELALKGEKKYLLKGQR 118
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P L V F ++PI GCLG CT+C TK AR L S +S++ + G
Sbjct: 119 -PRDWLKGVTPGGFRVVIPIADGCLGNCTFCITKVARPRLVSQRPDSIIEYALKGVKRGA 177
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+WL++ D AYG++IG+ LP LL ++ LP + +R+GM +P E + +V
Sbjct: 178 KEIWLTAPDVAAYGKEIGLELPDLLEKLLKVLPEN--VYVRVGMMSPDTFREVMDRTIDV 235
Query: 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
+R P V+ F H+P+QS SD VL M R YT S+F +V+ + + IATD++ GFPG
Sbjct: 236 MRDPRVFKFFHLPLQSASDKVLRLMGRRYTYSEFVEIVNKVRKAFNDPTIATDVMVGFPG 295
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
E ++DF T+ ++E F +VH++ + PRP T ARM +V V +R + +V EA
Sbjct: 296 EEEDDFELTLKALRELAFERVHLAAYTPRPLTLGARMPQVREDVKSRRVKRAMNVIEA 353
>gi|333911554|ref|YP_004485287.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
gi|333752143|gb|AEF97222.1| MiaB-like tRNA modifying enzyme [Methanotorris igneus Kol 5]
Length = 413
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 230/433 (53%), Gaps = 42/433 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++ +GC+ N +D+ + L +G+ +T N E+AD+ +INT ++ M I
Sbjct: 3 VYVEGYGCTLNTADTNIIENSLRDYGFEITSNIEDADLVIINTCVVRLETENRMFARINY 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV-------EVVEETLKGHEVRL 166
KS K +VVAGC+ + + K++E ++ + + + + +E++ ++ L
Sbjct: 63 FKSLNKKVVVAGCLAKALK--KKVENLADLLIMPREAHLSGKILYKHFIEKSSIEKDINL 120
Query: 167 LHRKKL--PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ K P+L P LPI+ GC+G C+YC K ARG L SY+ E LV + +
Sbjct: 121 EEKLKYLSPSLITP----------LPISEGCIGNCSYCIVKIARGRLVSYSREKLVEKAK 170
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
+I G K + ++++DT YG D NLP L+N + + +G ++RIGM + +
Sbjct: 171 ELINSGTKCLLITAQDTACYGFDRNDNLPNLINDLCS---IEGEFIMRIGMMHAKNVENI 227
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L ++ E + V LH+P+QSG D VL AM REYT+ +F ++V+ + + + TD
Sbjct: 228 LDDLIEAYKDEKVAKLLHLPLQSGDDDVLKAMKREYTVDEFISIVNEFRKKIKDLTFVTD 287
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
II GFP ET+E F T+ ++++ K +H +++ R T AARMK++ + + K+RS L
Sbjct: 288 IIVGFPTETEEAFENTLEVLRKLKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILD 347
Query: 405 SVFEAFTPYLGME---GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
+ + Y+ + G+ R+ +TE G T + +V+ + +GT +K
Sbjct: 348 KLRRELS-YMNNKKYIGKKMRVLVTEEGK------GITHNF-KVVRFNKNAEIGTFKEIK 399
Query: 462 ITSVGRWSVFGEV 474
IT + +FGE+
Sbjct: 400 ITDAKTFGLFGEL 412
>gi|325967748|ref|YP_004243940.1| MiaB family RNA modification protein [Vulcanisaeta moutnovskia
768-28]
gi|323706951|gb|ADY00438.1| RNA modification enzyme, MiaB family [Vulcanisaeta moutnovskia
768-28]
Length = 452
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 133/436 (30%), Positives = 230/436 (52%), Gaps = 38/436 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
TFGC N++DS+ + +L + G+ T++ + AD +INT + + L+ K
Sbjct: 9 TFGCWLNKADSDIVITRLRSLGWEYTEDIKSADTIIINTCAVREEAERNELKLLRKLSEE 68
Query: 118 --KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR----KK 171
K L+V GC+ + + ++ + V E ++E + G ++ K
Sbjct: 69 YLNKRLIVTGCLTRVRPAM--IKDAAPNAVLVTSHGAEFIDEVVNGRNDIYVYEDRPMKY 126
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIA 228
LP+ P+ +++V +PI VGCLG C++C TK R G + SY + + V ++
Sbjct: 127 LPSY-YPEFHGHRYV--VPIQVGCLGNCSFCVTKVGRMGFGKVRSYEMSDITNAVANAVS 183
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
G +E++L+ ++ AYGRD G +L LL I+ ++ DG M+R+GM P + + +
Sbjct: 184 RGAREIYLTGQEISAYGRDRGYDLADLLENILGKV--DGRFMIRLGMMEPLELSRVIDRL 241
Query: 289 AEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
++++ VY F H+PVQSGSD +L+ M R+Y++S F+ +V + + P I TDII
Sbjct: 242 LDIVKSDWRVYRFFHIPVQSGSDRILTLMKRKYSVSLFKDIVTRIRRVFPDATIVTDIIV 301
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFPGETDEDF +V LI+E +V+++++ RP T AA M++VP + K+RS+ T +F
Sbjct: 302 GFPGETDEDFWASVRLIEELSIDKVNLARYSRRPFTEAAYMEQVPEQIKKERSKVATEIF 361
Query: 408 -----EAFTPYLGMEGRVERIW--ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
E P++G E +W +EI G + + + Y + V +G V
Sbjct: 362 NKVALERNKPFIGKE-----MWGITSEIDFRGENYIVRSYNYKPIAVKKAD--IGAFVKV 414
Query: 461 KITSVGRWSVFGEVIK 476
K+ + G++++
Sbjct: 415 KVMDATSHRLLGQLLE 430
>gi|119871859|ref|YP_929866.1| RNA modification protein [Pyrobaculum islandicum DSM 4184]
gi|119673267|gb|ABL87523.1| RNA modification enzyme, MiaB family [Pyrobaculum islandicum DSM
4184]
Length = 415
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 236/436 (54%), Gaps = 45/436 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
IY++T+GC ++D+E + +L GY N +EAD+ L+ T + + I +
Sbjct: 4 IYVETYGCWLAKADAEILRQRL---GYEQVSNVDEADVILVYTCAVREDGEVRQLARIRE 60
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K L+VAGC L L +I + +++ E ++G + R +
Sbjct: 61 LVKLGKELIVAGC-------LARLRPYTIKSLAPHAKLIYPSE--IEGGKERSMK----- 106
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 230
LPK R + +P+ VGCLG CT+C TK+ RG G S + +V ++ +A G
Sbjct: 107 --TLPKYERG-LIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDDVVRHIKEAVAKG 163
Query: 231 VKEVWLSSEDTGAYGRDIGV----NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+E++L+ +D YG D G LP LL+ I+ E+ +G +RIGM+ P + +
Sbjct: 164 AREIYLTGQDVITYGFDAGWRGGWTLPDLLDRILKEV--EGEYRVRIGMSEPWIFEKFVD 221
Query: 287 EIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIATD 344
++ +++ R VY + H+PVQSGSD VL AM R+YT+ ++R ++ + EL + IATD
Sbjct: 222 QLLDIIKRDHRVYRYFHLPVQSGSDKVLVAMGRKYTVEEYRGLIRRIRRELGDNVFIATD 281
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 403
II GFPGET+EDF +TV L++E +F ++H+++F PRP T AA M ++VP A K+RS+ L
Sbjct: 282 IIVGFPGETEEDFQETVKLVEELQFDKIHVARFSPRPFTEAAVMPRQVPDAEKKRRSKIL 341
Query: 404 TSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSAL 459
+ V A G+ + + I E+ D +VG Y QV+V + +LG
Sbjct: 342 SEVAMRIAHLRNGAQVGKRDVVLIDEV--DHGLVVGRASDYRQVVVKRGAGDGLLGEFVN 399
Query: 460 VKITSVGRWSVFGEVI 475
V+I + ++GE++
Sbjct: 400 VRIAAASPVYLYGEIL 415
>gi|225849364|ref|YP_002729528.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643388|gb|ACN98438.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 437
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 151/437 (34%), Positives = 229/437 (52%), Gaps = 31/437 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
Y++TFGC N +DSE MAG L GY + +EAD+ L+NT S + K SA
Sbjct: 4 YIRTFGCQMNVNDSEKMAGILKTLGYEPAQDWKEADVILVNTCSVREKPDQKVLSALGEF 63
Query: 118 -----KKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-VR 165
KP + V GC+ Q G L++ + +V G I + +++EE G++ V
Sbjct: 64 KKIKKDKPNAIIGVCGCLAQRAGYEILQKAPFIDMVFGTTNIHHLPQLLEEAKSGNKAVE 123
Query: 166 LLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+L + LD P VR NK+ + + GC CTYC RG S + ++
Sbjct: 124 ILEEIDENENLLDQFPTVRENKYTAFVTVIRGCDKKCTYCIVPTTRGKERSRRIGDILRE 183
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
V+ ++ DGVKE+ L ++ AYG+D+G V LL A VA +P G +R +P +
Sbjct: 184 VQFLVEDGVKEIHLIGQNVTAYGKDLGDVKFWELLQA-VASVP--GVERIRFTTGHPRDL 240
Query: 282 LEH-LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E +K +A++ P V LH+P+Q+GSD VL AM+R YT ++ +D L + +P +
Sbjct: 241 DEDTIKVMADL---PQVCEALHLPIQAGSDKVLQAMDRGYTQKEYLQKIDLLKKYIPDIA 297
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVKKR 399
++TDII GFPGET ED+ +TV +IKE ++ QV ++ PRPGTPAA + S + K
Sbjct: 298 LSTDIIVGFPGETYEDYLETVKVIKEVEYDQVFAFKYSPRPGTPAADIPMTESPETISKW 357
Query: 400 SRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+L ++ + F L EG+ + I E+ +G L G T+ V V +G
Sbjct: 358 LNDLINIQKDITFKKNLSYEGKTVEVLIEEVNEEG-KLTGRTRTNKLVHVDGPQEYVGYI 416
Query: 458 ALVKITSVGRWSVFGEV 474
VKI V R+S+ G +
Sbjct: 417 VNVKIEKVNRFSLEGRI 433
>gi|91773329|ref|YP_566021.1| MiaB-like tRNA modifying enzyme [Methanococcoides burtonii DSM
6242]
gi|91712344|gb|ABE52271.1| Radical SAM family protein with UPF0004 and MiaB-like domains
[Methanococcoides burtonii DSM 6242]
Length = 430
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 141/435 (32%), Positives = 218/435 (50%), Gaps = 28/435 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP 120
+++ T+GCS NQ+ SE M + GY L D + A++ +INT + T K +
Sbjct: 3 VHITTYGCSANQASSEIMIASVRDLGYELVDEMD-AEVVVINTCTVKYTTEQKILHKIED 61
Query: 121 L-------VVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEV---VEETLK---GHEVR 165
L VV GC+PQ + L+ I+GV I ++ +V +E + K V
Sbjct: 62 LGAKGIDVVVTGCMPQVQLETILERNPDAHILGVNSIAKIGQVLRSIENSCKVGSRERVE 121
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
L+ + L R N + I I+ GC +C YC ARG L S+ +S+V +R
Sbjct: 122 LITSEPEGFLKTAHSRFNPNIHICQISQGCDYSCAYCIVTIARGKLRSFDADSIVEDIRM 181
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+ +G +E+WL+S+D G YG D V LP LL IVA +P G +R+GM NP + L
Sbjct: 182 AVDEGCREIWLTSQDNGQYGTDRDVLLPELLRRIVA-IP--GDFKIRVGMMNPFSVTPIL 238
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
++ EV R +Y +H+P+QS SD VL MNR +++ + +V L E P + + TDI
Sbjct: 239 DDLIEVFRSDKIYKIVHLPIQSASDNVLKKMNRYHSIEEANGIVFRLREAFPDLTLFTDI 298
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL-- 403
I GF E+D DFN T+ +K K +V+IS++ PRP T A + + + +V +RS +L
Sbjct: 299 IVGFSSESDNDFNMTLEWVKTMKPDKVNISRYTPRPLTKALEYRNLDTRIVVERSNKLHK 358
Query: 404 ---TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
T ++ +G +G V + A ++ T Y V++P GTS V
Sbjct: 359 LCDTIKLDSKKKMIGWKGEV----FISMDAKVKGVMARTASYKPVVLPEGSVSPGTSCNV 414
Query: 461 KITSVGRWSVFGEVI 475
+I G V+
Sbjct: 415 EIYDTTAGYFLGRVL 429
>gi|254167353|ref|ZP_04874205.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197623616|gb|EDY36179.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 216/408 (52%), Gaps = 34/408 (8%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLI-------NTQSAMDTLIAKCKSAKKPLVVAGCVPQG 130
M GQ A G + EEAD+ LI +T++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIKELKQYGKKIVVYGCLPSA 57
Query: 131 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 190
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDMDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 191 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 250
I GCLG CTYC T+ ARG + S + + ++ V+ + G E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKDWILRLVKKALEQGAVEIRISAQDTAAYGRDIGT 161
Query: 251 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 310
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG D
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDD 218
Query: 311 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370
+L MNR Y + DF +V + P M ++TDII GFPGE DE F T+ LIKE K
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278
Query: 371 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEI 428
++I++F PRP TPA + K+ + VK S++LT++ + M G+ ++ +
Sbjct: 279 ILNITRFSPRPKTPAYKWKRPSTNKVKGWSQKLTALHMENMHKRFESMLGKEFKVIVPSR 338
Query: 429 AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
G +L ++ Y V++ + ++G +++IT + + G++++
Sbjct: 339 GKRGKYL-ARSQNYEPVVLDNA--VIGREYIIRITHYEKSHLVGKILE 383
>gi|296133939|ref|YP_003641186.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296032517|gb|ADG83285.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 445
Score = 202 bits (513), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 145/440 (32%), Positives = 220/440 (50%), Gaps = 36/440 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
+ T GC NQ ++E +A GY + + S++AD+++INT + +I +
Sbjct: 4 VAFHTLGCKVNQYETEALASLFRRQGYQVVEFSDKADVYVINTCTVTHLGDRKSRQMIRR 63
Query: 114 CKSAKKPLVVA--GCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEE--------TLKG 161
K +VA GC Q S ++ +EGV +V G +VVE VE+ L
Sbjct: 64 AKRNNPDAIVAVMGCYAQTSPGEVTAIEGVDLVIGTSDRSKVVECVEDFKRQDTPVNLVK 123
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
++ ++LP LD R L I GC CTYC +ARG + S ++++
Sbjct: 124 DIMQAREFEELPVLDYESRTR----AFLKIQEGCNNFCTYCIIPYARGPVRSRKRDNVIT 179
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 280
++ +G +E+ L+ GAYGRD L A+VA+L G LR+G P
Sbjct: 180 EAERLVGEGFREIVLTGIHIGAYGRDRDDGYD--LAALVADLARIKGLRRLRLGSVEPED 237
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ HL IA + + + LH+P+QSG DAVL MNR+Y +F +V+++ +V +
Sbjct: 238 VTPHL--IATMADNRVICRHLHLPLQSGDDAVLEKMNRKYNTHEFTRLVNSIRAMVDDIA 295
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
I TDII GFPGETDE F+ T N +K F ++H+ ++ PR GTPAA +VP+ ++R
Sbjct: 296 ITTDIIVGFPGETDEQFDNTYNYVKALGFSRLHVFKYSPRKGTPAANFPGQVPAETKEER 355
Query: 400 SRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
S L + E +LG E +E + + AD ++ G T Y+ V P +
Sbjct: 356 SSRLIELGKEMGREFARRFLGRE--MEVLVEQRLEADLHYMEGLTDNYLAVAFPGGNELK 413
Query: 455 GTSALVKITSVGRWSVFGEV 474
G VK+TSV VFGEV
Sbjct: 414 GEFVTVKLTSVKEEHVFGEV 433
>gi|257387570|ref|YP_003177343.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
12286]
gi|257169877|gb|ACV47636.1| MiaB-like tRNA modifying enzyme [Halomicrobium mukohataei DSM
12286]
Length = 420
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 142/433 (32%), Positives = 227/433 (52%), Gaps = 36/433 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +++ + L G+ D EEAD+ ++NT + ++ ++ + +
Sbjct: 5 HIETYGCTSNRGETQEIEQALREGGHYPADGPEEADVAILNTCTVLEKTERNMLRRAEEL 64
Query: 116 SAKKP--LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV--RLLHRKK 171
A+ P LVV GC+ L + E R +V E L +V +L+ +
Sbjct: 65 DAETPGDLVVTGCMA-----LAQGEEF---------RAADVDAEVLHWDDVPQHVLNGEC 110
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
+ + V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 111 PTVTPDTETVLDGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKARALVHAGA 170
Query: 232 KEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
KE+ ++ +DTG YG D LP LL I E+ DG +R+GM NP + +E+
Sbjct: 171 KELRVTGQDTGVYGWDTNQGESLLPELLERICTEI--DGEFRVRVGMANPKGVHGVREEL 228
Query: 289 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
A V H +Y+FLH PVQSGSD VL+ M R++ + ++ VVDT E + ++TD I
Sbjct: 229 ARVFAEHDELYNFLHAPVQSGSDDVLADMRRQHAVGEYVAVVDTFDEYLDYWTLSTDFIV 288
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFP ET+ DF Q++ L++E + ++++++F RPGT AA MK + + K RS+ ++ +
Sbjct: 289 GFPSETESDFQQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQIKKDRSKAMSELK 348
Query: 408 EAFT--PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKI 462
T Y M G +R+ +TE D LVG+ + Y QV+V G +G +I
Sbjct: 349 MDVTGDAYEAMLGEQKRVLLTEDGTDD-SLVGYDEAYRQVVVVDAQQRGLEVGDFVDCEI 407
Query: 463 TSVGRWSVFGEVI 475
TS FGE I
Sbjct: 408 TSHNTVYAFGEPI 420
>gi|389860714|ref|YP_006362954.1| MiaB family RNA modification protein [Thermogladius cellulolyticus
1633]
gi|388525618|gb|AFK50816.1| RNA modification enzyme, MiaB family [Thermogladius cellulolyticus
1633]
Length = 425
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 194/363 (53%), Gaps = 23/363 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDT---------- 109
+Y++T+GC+ N+SD M L+ G+ + D+ AD +INT + +DT
Sbjct: 3 VYLETYGCALNKSDEALMKRVLTDRGHGIVDDPTSADALVINTCTVRLDTEYRMARRIAE 62
Query: 110 LIAKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
L K + K LVVAGC+ Q + K SIV Q D++ VE R++
Sbjct: 63 LYRLAKESGKKLVVAGCLAKAQPYKVAKLAPDASIVSPQNADKIYLAVESN-----SRVV 117
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
L + V + +P GCLG CT+C KHAR L S+ +E + V +
Sbjct: 118 LLTGLRSRGSIGVFLTGRIAPIPAQEGCLGNCTFCIVKHARRVLVSHPIEDVKKAVEEAV 177
Query: 228 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
G E+ L+ D G YG D+ LP L+ + VAE+ +G M+R+GM NP + L
Sbjct: 178 RLGAVEIELTGMDLGTYGIDLYKTRKLPELIES-VAEV--EGDFMVRVGMLNPEHLSYIL 234
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
++ E L+H VY FLH+P+QSGS+ +L M R+YT+ ++ V+ L +PG+ IATDI
Sbjct: 235 DDLVEALQHRKVYKFLHIPLQSGSNRILKLMGRKYTVEEYIDYVEELKSKIPGISIATDI 294
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
+ GFP ETDEDF TV +IK+ +F +VH++ + RP T A + ++P+ K R +
Sbjct: 295 LVGFPHETDEDFQDTVEVIKKLRFERVHLAAYSIRPRTLATSLPQIPTQTKKSRVLQALR 354
Query: 406 VFE 408
V E
Sbjct: 355 VIE 357
>gi|52549017|gb|AAU82866.1| conserved hypothetical protein [uncultured archaeon GZfos21B5]
Length = 430
Score = 201 bits (512), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 202/386 (52%), Gaps = 35/386 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----QSAMDTL- 110
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NT ++ ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 111 -IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ + K K +VVAGC+ +L + SI+G D V V ++ E +
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVK----SILG----DGVAMVTPRDIQASEKQ---- 115
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
LD V + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 116 ----RLDFDGV-----IAVITIAQGCIGKCTYCIVKQARGKLKSYKSEKICEAVKSAVES 166
Query: 230 GVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWSSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
E ++ F HVPVQSGSD VL M R Y ++DF +V + I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMKRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ET+EDF ++NL++E K +V+I++F PRPGT A+++ + K+RSR ++V+
Sbjct: 284 FPTETEEDFFASLNLMEEIKPEKVNITRFSPRPGTEASKLTDLLEREKKRRSRIFSTVYH 343
Query: 409 --AFTPYLGMEGRVERIWITEIAADG 432
F +EG + +TE G
Sbjct: 344 NIVFAKNKELEGAELPVLVTETGKKG 369
>gi|305663521|ref|YP_003859809.1| MiaB family RNA modification protein [Ignisphaera aggregans DSM
17230]
gi|304378090|gb|ADM27929.1| RNA modification enzyme, MiaB family [Ignisphaera aggregans DSM
17230]
Length = 426
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/426 (30%), Positives = 222/426 (52%), Gaps = 18/426 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY++T+GC+ N++D+ + L + D+ EAD+ ++NT + M + +
Sbjct: 3 IYIETYGCALNRADTNIIKTLLIEKKIEIVDSPREADVIILNTCVVRYDTEVRMLKRLEE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
K ++V+GC+ +R L ++ V+ V + + + E + + + +
Sbjct: 63 LSKTGKKIIVSGCM---ARALPIKIRSVNPKAVLLPPQSIHRIYEAINADDGYIFFDEIK 119
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
+PK+ + +P+ GCL C++C K AR HL S +E++V V+ VI+ G
Sbjct: 120 TFTVMPKII-DGVKATIPVAEGCLDECSFCIVKIARPHLKSIPIENIVNAVKEVISMGAI 178
Query: 233 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
E+ ++++D YG DI LP LL +I+ D ++RIG NP ++ +L
Sbjct: 179 EIEITAQDLSVYGYDIYGEYALPKLLESILEIERED--FVIRIGQLNPRHLVNYLDRFIA 236
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+LR P VY +H+PVQSG++ VL AMNR++ + F ++ L + + G+QIATDII G P
Sbjct: 237 ILRDPRVYKHVHIPVQSGNNRVLEAMNRKHGVELFLDIISELRKKIEGIQIATDIIVGHP 296
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
GE +E F +V LI E +VHI+++ PRP T ++ MK++P + K RS + ++E
Sbjct: 297 GEDEEAFMDSVKLITENYIDRVHIARYSPRPLTRSSLMKQIPDPIKKSRSSYIEKIYEVV 356
Query: 411 TPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRW 468
+ E G + +WITEI + +G Y V++ LG A V+I +
Sbjct: 357 AYEVNREYIGSIAEVWITEIDSRRNIAIGRLFNYRPVVLDRGPEALGRKAFVEIRDATFY 416
Query: 469 SVFGEV 474
+ G V
Sbjct: 417 DLRGIV 422
>gi|374635310|ref|ZP_09706912.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
gi|373562898|gb|EHP89103.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
Length = 417
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 225/430 (52%), Gaps = 36/430 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
IY++ +GC+ N +D+ + L F + +TDN E+AD+ +INT ++ M I
Sbjct: 8 IYVEGYGCTLNIADTNIIENSLKEFNFEITDNVEDADLVIINTCVVRLETENRMFARINY 67
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG---HEVRLLHRK 170
KS K +VVAGC+ + + K++E ++ D ++ E L G HE + K
Sbjct: 68 FKSLDKKVVVAGCLAKALK--KKVENLA-------DLLIMPREAHLSGEIIHEHFVEKNK 118
Query: 171 KLPALDLPKVRRN---KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
K ++L + + + LPI GC+G C+YC K ARG L SY+ E +V + +I
Sbjct: 119 KENTINLEEKLKYISPSLITPLPICEGCIGECSYCIVKVARGRLISYSREKIVKKAEELI 178
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
G K + ++++DT YG DI NLP L+N + + +G ++RIGM + + + L +
Sbjct: 179 NSGTKCLLITAQDTACYGFDINDNLPNLINDLCS---INGEFIMRIGMMHAKNVGDILDD 235
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ E + V LH+P+QSG D VL AM R YT+ +F ++V+ + + + TDII
Sbjct: 236 LIEAYKDEKVAKLLHLPLQSGDDGVLKAMKRGYTVDEFISIVNEFRKKIEDLTFVTDIIV 295
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
GFP ET+E F T+ ++++ K +H +++ R T AARMK++ + + K+RS L +
Sbjct: 296 GFPTETEEAFENTLEVLRKIKPDYIHGAKYTSRKYTEAARMKQIDTKIRKRRSEILDKLR 355
Query: 408 EAFTPYLGME---GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+ Y+ + G+ ++ ITE G T + V + +G +KIT
Sbjct: 356 RELS-YMNNKKYVGKKMKVLITEENK------GITHNFKVVRFNEDAD-IGAFKEIKITD 407
Query: 465 VGRWSVFGEV 474
+ +FG +
Sbjct: 408 AKTFGLFGNL 417
>gi|323141892|ref|ZP_08076753.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413639|gb|EFY04497.1| tRNA methylthiotransferase YqeV [Phascolarctobacterium
succinatutens YIT 12067]
Length = 437
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 147/440 (33%), Positives = 216/440 (49%), Gaps = 33/440 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS---- 116
I T GC NQ+D+ M G A GY + E AD++L+NT +T K +
Sbjct: 4 IAFYTLGCKVNQADTASMEGIFRASGYEVVPFGEPADVYLVNTCVVTNTGQRKSRQIINR 63
Query: 117 --AKKPL---VVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 169
PL VV GC PQ + +++ +EGV I+G Q+ R+VE+VEE L+ +L
Sbjct: 64 AVRHNPLSLVVVTGCYPQTAPEEVRAIEGVDVIIGNQERGRIVELVEEALEHKRTEILDN 123
Query: 170 KKLPALDLP------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ +D +K L I GC CTYC ARG L S +++S+ V
Sbjct: 124 VQQMTVDTKFEELGVGTETDKTRAFLKIQEGCNQYCTYCIIPFARGPLRSRSLDSIREEV 183
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTMLRIGMTNP--- 278
++A G KEV L G YG+++ L +A+ A L +G +R+G
Sbjct: 184 GKLVAAGYKEVVLIGIHLGCYGKELAKEGKHVTLYDAVKAALSVEGVQRVRLGSLESVEV 243
Query: 279 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P +L+ + E + RH LH+P+QSG D +L AM+R Y F +V+ + VP
Sbjct: 244 EPRLLQLMAEEPRLQRH------LHLPLQSGCDKILRAMHRPYDTKRFTELVNEIRAQVP 297
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ I TD+I GFPGE +EDF T+ K+ F ++HI + R GTPAA MK +V AV
Sbjct: 298 DVAITTDVIVGFPGENEEDFATTLEFAKKCGFAKMHIFPYSKRKGTPAAEMKEQVDEAVK 357
Query: 397 KKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+R+ L V E + G+VE + E D H+ G Y++V+VP T +
Sbjct: 358 SERAARLAKVDEELHQQMLQSTVGKVEEVLF-EQPVDDEHMEGLCGPYLRVVVPGTAELA 416
Query: 455 GTSALVKITSVGRWSVFGEV 474
T VKIT + + GE+
Sbjct: 417 NTIVKVKITGIKEDFLLGEL 436
>gi|296242700|ref|YP_003650187.1| MiaB family RNA modification protein [Thermosphaera aggregans DSM
11486]
gi|296095284|gb|ADG91235.1| RNA modification enzyme, MiaB family [Thermosphaera aggregans DSM
11486]
Length = 427
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 147/410 (35%), Positives = 220/410 (53%), Gaps = 39/410 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDT---------- 109
+Y++T+GC+ N+SD M L G+ + DN AD+ +INT + +DT
Sbjct: 3 VYVETYGCALNRSDEALMKHVLIERGHTIVDNPSNADVVIINTCTVRLDTEQHMLNRISS 62
Query: 110 LIAKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
L ++ K L+VAGC+P Q + K S+V Q R+ VE G V L
Sbjct: 63 LRELTQARKGKLIVAGCLPAAQPYKVAKTAPEASLVSPQNSSRIYVAVES--DGRVVMLD 120
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
++ + L NK I PI GCL C++C TKHAR L S+TVE++V V T +
Sbjct: 121 GVRERDRIGL--CFENKVAPI-PIQEGCLSNCSFCITKHARRVLVSHTVEAIVKSVETAV 177
Query: 228 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP---PFIL 282
G E+ L+ D G YG ++ LP L+ V+ LP G +RIGM NP P IL
Sbjct: 178 RMGAVEIQLTGMDLGTYGMELYGKRYLPELVRR-VSTLP--GEFRVRIGMINPEHLPPIL 234
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ L E + R +Y FLH+P+QSGSD VL AMNR+YT+ ++R ++ + + + + IA
Sbjct: 235 DELLEAVKSDRR--IYRFLHIPLQSGSDKVLKAMNRKYTVDEYRGLIKEVKQKISDVSIA 292
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS-R 401
TDII G P E +EDF +T+ +I+E +F +VH + + RP T +A M +P+ + K+R R
Sbjct: 293 TDIIVGHPLEDEEDFEETLKIIRELEFERVHFAGYSVRPNTLSAGMPNIPTRIRKERMLR 352
Query: 402 ELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
L +V F+ Y+G+ V +ITE + VG Y+ V++
Sbjct: 353 MLETVEEVGFKVREKYIGLTLPV---FITEYSNT---WVGRLDNYIPVIL 396
>gi|73669341|ref|YP_305356.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
gi|72396503|gb|AAZ70776.1| 2-methylthioadenine synthase [Methanosarcina barkeri str. Fusaro]
Length = 442
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 226/428 (52%), Gaps = 31/428 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALT--DNSEEADIWLINTQSAMDT----LIAKC 114
+Y+++FGCS +Q+ +E M + G+ L + +++A++++ N+ + T ++ K
Sbjct: 3 VYLESFGCSASQASAEIMKASVERLGHKLLGPEAADQAEVYICNSCTVKYTTEQKILYKI 62
Query: 115 KSAKKP---LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVV----EETLKG---- 161
+S + ++V+GC+P+ + L I+GV I R+ E++ + +KG
Sbjct: 63 RSMGEKNVEVIVSGCMPEVQLEDILHANPEAHILGVNAISRLGELLSLIEQRKMKGLPGG 122
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + + L++P+ R N + I I+ GC AC+YC K+ARG L S+ +V
Sbjct: 123 EHLEFRASEPVGFLNVPRERSNPNIHICQISQGCNFACSYCIVKYARGKLHSFPPNDIVE 182
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R +A G +E+WL+S+D YG D GV LP LL +++E+P G +R+GM NP +
Sbjct: 183 DIRAAVAGGCREIWLTSQDDSQYGMDTGVRLPELLR-MISEIP--GDFKVRVGMMNPFSV 239
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
L L ++ + V+ LH+P+QS S +VL MNR + + ++ + +
Sbjct: 240 LPILDDLVDAFDSDKVFKLLHLPIQSASHSVLKRMNRLHKMDVVDMIITKFRARFEDLSL 299
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
TDII GF ETD++F +TV +++Y+ +V+IS++ PRP T A + + S ++ +RS
Sbjct: 300 FTDIIVGFCDETDDEFEETVEWVQKYRPEKVNISRYSPRPHTKAFSFRNLDSRILVQRSH 359
Query: 402 ELTSVFEAF-----TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
EL V E +G +GRV TEI ++ T Y V++ + G
Sbjct: 360 ELHKVCEQIKLGSKQAMIGWKGRVFVSKYTEIG----DVLTRTDAYRPVVISGSNLKPGQ 415
Query: 457 SALVKITS 464
A ++I +
Sbjct: 416 HANIEIVA 423
>gi|448592731|ref|ZP_21651778.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
gi|445730757|gb|ELZ82344.1| MiaB-like tRNA modifying enzyme [Haloferax elongans ATCC BAA-1513]
Length = 431
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 228/434 (52%), Gaps = 39/434 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 10 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 69
Query: 118 KKP---LVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
++ L+V GC+ D EGV I+ + V E G V
Sbjct: 70 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 122
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 123 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 175
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 176 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 233
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+H +Y+F+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P
Sbjct: 234 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 293
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETDED ++++L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 294 TETDEDHERSMDLLREIRPEKVNVTRFSKRPGTDAANLKGLGGTIKKERSKEMSEAKMDI 353
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V EA+ +G E V + + E D + Y Q++V + G G V++
Sbjct: 354 VAEAYEEMVGTEQEV--LVVQEGTGDSVKC--RDAAYRQIIVQNASEHGLEPGDFTHVEV 409
Query: 463 TSVGRWSVFGEVIK 476
T+ FGE ++
Sbjct: 410 TAHQTVYAFGEPVE 423
>gi|116753688|ref|YP_842806.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
gi|116665139|gb|ABK14166.1| MiaB-like tRNA modifying enzyme [Methanosaeta thermophila PT]
Length = 411
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 199/353 (56%), Gaps = 25/353 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCK 115
++T+GC+ N +S + G L A G+ +D + +++ ++NT + M I + K
Sbjct: 5 IETYGCTSNTGNSMELRGALIAHGHQESD-LDGSEVVILNTCAVTSRTERNMLRRIGELK 63
Query: 116 SAKKPLVVAGCVPQGSRDLKE-LEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
+ L+VAGC+P +L E +E V ++ IDRV++ + + H L LP
Sbjct: 64 GRR--LIVAGCLPAAIPELIESVECVGVLNRWGIDRVLDALGRS--EHPTSELSASCLPG 119
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 234
++ I+ GCLGAC YC K ARG L S + V +I+ G E+
Sbjct: 120 ---------SLCGVVNISEGCLGACAYCIVKRARGTLRSREPHEIEKDVMRLISSGAVEI 170
Query: 235 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 294
L+S+D GAYG DIG +LP LL+ +++++ DG+ M+R+GM NP +L+ L ++ + ++
Sbjct: 171 QLTSQDAGAYGCDIGASLPELLD-LLSDI--DGAFMIRVGMMNPNSVLKILDDLLDSYKN 227
Query: 295 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 354
+Y F+H+P+QSGSD VL M R YT DF VV P + + TD+I GFPGE+D
Sbjct: 228 EKIYRFIHLPLQSGSDRVLERMRRGYTSDDFVNVVSAFRSRYPEISLTTDVITGFPGESD 287
Query: 355 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
+DF T ++I+ + +V++++F RP T A M +P + K+RSR +T ++
Sbjct: 288 QDFRMTEDVIRITQPDKVNVTRFSRRPHTLAFMMHDMPDRIKKERSRRVTELW 340
>gi|18313702|ref|NP_560369.1| hypothetical protein PAE2939 [Pyrobaculum aerophilum str. IM2]
gi|18161255|gb|AAL64551.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 416
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 234/439 (53%), Gaps = 49/439 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
+Y++T+GC ++D+E + +L G L N EE+D+ LI T + + I
Sbjct: 4 VYVETYGCWLAKADAEILRQRL---GLELASNVEESDVVLIYTCAVREDGEVRQLARIRD 60
Query: 114 CKSAKKPLVVAGCVPQ-GSRDLKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
+ + ++VAGC+ + +K L G +++ QQ++ G E + K
Sbjct: 61 LAKSGREMIVAGCLARLRPYTIKSLAPGAALIYPQQVE----------GGPEREM---KI 107
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIA 228
LP V +P+ VGCLG CT+C TK+ RG ++ S E +V +V+ +A
Sbjct: 108 LPEFS------GGVVYTVPLQVGCLGNCTFCATKYTRGGAGYVKSADPEEVVRKVKKAVA 161
Query: 229 DGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
G +E++L+ +D YG ++ G NLP LL I+ E+ DG +RIGM+ P +
Sbjct: 162 MGAREIYLTGQDVITYGFEMRWKRGWNLPDLLERILKEV--DGEYRIRIGMSEPWVFEKF 219
Query: 285 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 342
+I +V+ R VY + H+PVQSGSD VL M R+YT+ ++R +V + ++ IA
Sbjct: 220 ADQILDVVKRDRRVYRYFHLPVQSGSDKVLRVMGRKYTVDEYRELVRKIRRVLGETTFIA 279
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
TDII GFPGE +EDF TV L +E +F ++H+++F PRP T AA M K+VP K+RS+
Sbjct: 280 TDIIVGFPGEEEEDFWATVKLAEELQFDKIHVARFSPRPFTEAAVMPKQVPDVEKKRRSK 339
Query: 402 ELTSV-FEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTS 457
L+ + + G+ G + + I EI D +VG Y QV+V + +LG
Sbjct: 340 ALSEISLKIAHVRNGLRVGTKDEVLIDEI--DHGLVVGRASDYRQVVVKRGTHRELLGKF 397
Query: 458 ALVKITSVGRWSVFGEVIK 476
V+I + G ++ EVI+
Sbjct: 398 TNVRIVAAGPIYLYAEVIE 416
>gi|355571405|ref|ZP_09042657.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
gi|354825793|gb|EHF10015.1| MiaB-like tRNA modifying enzyme [Methanolinea tarda NOBI-1]
Length = 410
Score = 198 bits (503), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 210/402 (52%), Gaps = 38/402 (9%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----QSAMDT 109
+PGT +YM+T+GC++N+ DS +A L A G L + AD +INT ++
Sbjct: 11 LPGTR-VYMRTYGCTYNEGDSWKLAEILKARGCILVSDPLLADAIVINTCIVVGKTERKI 69
Query: 110 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
L + A +PL V GC+P +V I V + V ++H
Sbjct: 70 LHELRQHAGRPLYVTGCMP-------------LVQADAIRNVCDPV----------IIHP 106
Query: 170 KKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+ A +L V + V ++ GCLG+C+YC T ARG L S ++E + ++
Sbjct: 107 DDIHAAYAELKTVPQGS-VGVVQACRGCLGSCSYCVTHLARGKLVSRSLEDVTQEAARLV 165
Query: 228 ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
A G E+ L+ +D A+GRD G + LL ++ A G M+R GM NP + + E
Sbjct: 166 AAGAVELRLTGQDLSAWGRDTGQSPADLLRSLDALC---GRFMIRAGMMNPATLFPVMDE 222
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+AE R P +++ LH+P+QSG++ VLS M R YT ++V+ VP + + TDIIC
Sbjct: 223 VAEAFRLPKIFAALHLPIQSGAEKVLSRMRRGYTQEQVVSIVERFEREVPALSLTTDIIC 282
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF 407
G+PGET +DF++T+ L++ + +V ++++ PRPGT A K +P + K+RSR L
Sbjct: 283 GYPGETGDDFSETLALLQRIRPDRVIVTRYSPRPGTRAWHEKDMPDRIKKERSRTLRVCA 342
Query: 408 E--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
E A +GRV + ITE G L G T+ Y V++
Sbjct: 343 EEIARQKNAKWKGRVLPVMITEHVRPGTSL-GRTREYRAVVL 383
>gi|320101289|ref|YP_004176881.1| MiaB family RNA modification protein [Desulfurococcus mucosus DSM
2162]
gi|319753641|gb|ADV65399.1| RNA modification enzyme, MiaB family [Desulfurococcus mucosus DSM
2162]
Length = 428
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/393 (34%), Positives = 211/393 (53%), Gaps = 41/393 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDT---------- 109
+Y++T+GC+ N+SD M ++ G+ L ++ +AD +INT + +DT
Sbjct: 3 VYIETYGCALNRSDEALMRESITGKGHVLVNDPGDADAIIINTCTVRLDTEYHMVKRIRE 62
Query: 110 LIAKCKSAKKPLVVAGCVPQGSRDL--KELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
L A K L+VAGC+ + + G S++ Q RVVEV+E R++
Sbjct: 63 LYKLSMEAGKKLIVAGCMARAQPYTVSRIAPGASLLSPQNSPRVVEVLEAP-----GRVV 117
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+ A D V V +P+ GCL C++C ++HAR L S++++++V V +
Sbjct: 118 MINGVRARDRIGVYVENRVAPIPVQEGCLSNCSFCISRHARRVLVSHSIDAVVKAVGKAV 177
Query: 228 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
DG EV L+ D G YG D+ LP L+ IV + G+ MLR+GM NP EHL
Sbjct: 178 RDGAVEVQLTGMDLGTYGMDLYRARRLPDLIRRIVENV--RGNYMLRVGMINP----EHL 231
Query: 286 KEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ I E V VY FLH+P+QSGS+ VL M R YT+ ++ +VD + +P +
Sbjct: 232 RHILEDLVKVVADAENVYKFLHIPLQSGSNRVLKLMRRNYTVEEYLEMVDRVKSSIPEVS 291
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
IATDII G P E++EDF +T+ +I+E F +VH++ + RP T +A M+++P++V K+R
Sbjct: 292 IATDIIVGHPMESEEDFAETLRVIEEAGFERVHLAGYSMRPLTCSAAMQQLPTSVRKERV 351
Query: 401 RELTSVFEAFTPYLGMEGRVE------RIWITE 427
+ V E +GM R R +ITE
Sbjct: 352 LKALRVVEK----VGMRVRARYVGTSVRCFITE 380
>gi|222055074|ref|YP_002537436.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
gi|221564363|gb|ACM20335.1| MiaB-like tRNA modifying enzyme [Geobacter daltonii FRC-32]
Length = 438
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/440 (32%), Positives = 224/440 (50%), Gaps = 35/440 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK--- 115
+T+ + T GC NQ +S MA L G+++ ADI++INT + A+ +
Sbjct: 7 QTVAITTLGCKINQFESAAMAETLGKEGFSIVPFDGAADIYVINTCTVTSKTDAESRRLI 66
Query: 116 ---SAKKP---LVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 167
S + P +VV GC Q +L+++ GV+ I+G + + E++++ G R+L
Sbjct: 67 RRASRQNPSAKIVVTGCYAQVAFEELQDMPGVNLILGNSEKKGIAEMLKDL--GENQRVL 124
Query: 168 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
L+ R F E L + GC C+YC +ARG S ++E + +
Sbjct: 125 VSDISRELNERGTRLESFAEHTRAFLQVQNGCDAFCSYCIVPYARGRSRSVSLEEALAGI 184
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL--LNAIVAELPPDGSTMLRIGMTNPPFI 281
RT G KEV L+ GAYG D+ L +L LNA E + +RIG P +
Sbjct: 185 RTFAERGFKEVVLTGIHLGAYGLDLNPPLSLLDLLNAAEKERLVE---RIRIGSVEPTEV 241
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L I+ + + V LH+P+QSG D VL AMNR Y+ +DFR+V++ L +P + I
Sbjct: 242 SDAL--ISFLAKSATVCPHLHIPLQSGHDRVLKAMNRNYSTADFRSVMEKLDTDLPSICI 299
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFPGETD++F ++ H+ F PR GTPAA M+ V S+V+K+R+
Sbjct: 300 GTDIITGFPGETDDEFQDGYRFLESLPLAYFHVFPFSPRSGTPAATMEGHVHSSVIKERA 359
Query: 401 RELTSVFEA-----FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
+ L + E + ++G E++ + +G L G ++ Y+ V + ++L
Sbjct: 360 KALRKLSEEKKKSFYRSFIG-----EKLQVLVQTREGDLLKGLSRNYIPVFMEGDDDLLK 414
Query: 456 TSALVKITSVGRWSVFGEVI 475
T LV+IT V R V GEVI
Sbjct: 415 TEQLVRITGVEREKVTGEVI 434
>gi|254166896|ref|ZP_04873750.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
gi|197624506|gb|EDY37067.1| MiaB-like tRNA modifying enzyme, archaeal-type [Aciduliprofundum
boonei T469]
Length = 386
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 215/408 (52%), Gaps = 34/408 (8%)
Query: 78 MAGQLSAFGYALTDNSEEADIWLI-------NTQSAMDTLIAKCKSAKKPLVVAGCVPQG 130
M GQ A G + EEAD+ LI +T++ M I + K K +VV GC+P
Sbjct: 1 MLGQ--AMG-EIVSRPEEADVILIGTCVVIEHTENRMLRRIEELKRYGKKIVVYGCLPSA 57
Query: 131 SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILP 190
++L +++ V I + E+ E L L R + + + V +P
Sbjct: 58 RKELLDIDVVPIATWE-----FEMAGEILN------LDRSPMDEVFIWDA-----VATIP 101
Query: 191 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 250
I GCLG CTYC T+ ARG + S + E ++ V+ + E+ +S++DT AYGRDIG
Sbjct: 102 IANGCLGQCTYCITRLARGRVKSRSKEWILRLVKKALEQRAVEIRISAQDTAAYGRDIGT 161
Query: 251 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 310
L L+N+I A +P G LR+GM P L L E+ + +P VY FLH+PVQSG +
Sbjct: 162 ELAELINSITA-IP--GKFYLRVGMMEPRETLRILPELIDAYSNPKVYKFLHLPVQSGDN 218
Query: 311 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370
+L MNR Y + DF +V + P M ++TDII GFPGE DE F T+ LIKE K
Sbjct: 219 EILHRMNRGYKVEDFIKIVRNFRQRFPEMTLSTDIIVGFPGENDESFENTMKLIKEIKPE 278
Query: 371 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEI 428
++I++F PRP TPA + K+ + VK+ S++L ++ + M G+ ++ +
Sbjct: 279 ILNITRFSPRPKTPAYKWKRPSTNKVKEWSQKLAALHMENMHKRFESMLGKEFKVIVPSR 338
Query: 429 AADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
G +L ++ Y V++ + ++G +++IT + + G++++
Sbjct: 339 GKRGKYL-ARSQNYEPVVLDNA--VIGREYIIRITHYEKSHLVGKILE 383
>gi|169349836|ref|ZP_02866774.1| hypothetical protein CLOSPI_00574 [Clostridium spiroforme DSM 1552]
gi|169293404|gb|EDS75537.1| tRNA methylthiotransferase YqeV [Clostridium spiroforme DSM 1552]
Length = 428
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 220/425 (51%), Gaps = 27/425 (6%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+TI T GC N +S M + GY D E AD+++INT + +T +I
Sbjct: 2 KTIAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKEIADVYVINTCTVTNTGDSKSRQMI 61
Query: 112 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHEV-- 164
K K+ + + VAGC Q +++++EGV +V G Q +V+ V+E LK G V
Sbjct: 62 RKAIRKNPQATVCVAGCYSQIAPEEIEQIEGVGVVLGTQHRKDIVKYVDEYLKTGKPVIK 121
Query: 165 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+++ KK L++ + + + L I GC CTYC +ARG + S +S++ +
Sbjct: 122 VDNVMNLKKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRDKDSVLNQ 179
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+T++A+G E+ L+ T YG D+ N + +V + DG LRI I
Sbjct: 180 AKTLVANGYVEIVLTGIHTAGYGEDLD-NYS-FYDLLVDLVKIDGLKRLRISSIETSQIS 237
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + I + + + LH+P+QSG DA L MNR+YT S + ++ + +P +
Sbjct: 238 DEI--INLIGSNDIIVDHLHIPLQSGCDATLKRMNRKYTTSQYLEKINKIRNYLPNIAFT 295
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TD+I GFPGE+DE+F +T N IKE + ++H+ + R TPAA+MK +V + +R
Sbjct: 296 TDVIVGFPGESDEEFEETYNFIKEVNYSELHVFPYSLRRNTPAAKMKDQVDDKIKHERVN 355
Query: 402 ELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L + + ++ G++ ++ + DG +LVGH Y++V V +T N++G
Sbjct: 356 RLLELSKKLNRDFALKQIGKILKVLFEK--RDGDYLVGHASDYLKVKVKTTDNLIGEIVE 413
Query: 460 VKITS 464
VKI +
Sbjct: 414 VKINN 418
>gi|302808877|ref|XP_002986132.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
gi|300145991|gb|EFJ12663.1| hypothetical protein SELMODRAFT_446506 [Selaginella moellendorffii]
Length = 936
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 141/337 (41%), Positives = 175/337 (51%), Gaps = 101/337 (29%)
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
A +P VR+NKFVEI+PINVGCLGACTYCKTKHARGHLGSYTV++LV R++TV+++
Sbjct: 34 AASIPLVRKNKFVEIIPINVGCLGACTYCKTKHARGHLGSYTVDTLVQRLKTVVSE---- 89
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
GRDIG N+P LL A+VA LP + +N HL
Sbjct: 90 -----------GRDIGANIPALLRALVAALP----HRQKYNASN-----LHLTASGGNGC 129
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
HPCVY FLHV VQSG D+VL M REYT S+FR +VDTL LVP ET
Sbjct: 130 HPCVYLFLHVLVQSGRDSVLQGMKREYTFSEFRKIVDTLTRLVP--------------ET 175
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 413
GTPAA MK+VP+ VKKRSR LTS+FE+FTPY
Sbjct: 176 ----------------------------GTPAALMKRVPTLEVKKRSRSLTSLFESFTPY 207
Query: 414 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS---ALVKITSVGRWSV 470
GME V + ST + G S VKITSVGRWSV
Sbjct: 208 AGME-------------------------VGLCTSSTSSCTGPSWKQVNVKITSVGRWSV 242
Query: 471 F------GEVIKILNQVD-DKIASNRRISSQVRQDKC 500
E ++ +++D ++ + R+ S + Q +C
Sbjct: 243 TEENKLKDESVQRSHKLDWAQLGAPTRVQSPLSQTRC 279
>gi|448578250|ref|ZP_21643685.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
gi|445726791|gb|ELZ78407.1| MiaB-like tRNA modifying enzyme [Haloferax larsenii JCM 13917]
Length = 426
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 227/434 (52%), Gaps = 39/434 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 118 KKP---LVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
++ L+V GC+ D EGV I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRDEGVDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+H +Y+F+H PVQSGSD VL M R++ + FR +V+T E + ++TD I G+P
Sbjct: 229 FAKHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDETLDYWTLSTDFIVGYP 288
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 289 TETDEDHERSMALLREIRPEKVNVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDI 348
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V EA+ +G E V + + E D + Y Q++V + G G V++
Sbjct: 349 VAEAYEEMVGTEQEV--LVVQEGTGDSVKC--RDAAYRQIIVQNASEHGLEPGDFTRVEV 404
Query: 463 TSVGRWSVFGEVIK 476
T+ FGE ++
Sbjct: 405 TAHQTVYAFGEPVE 418
>gi|37523584|ref|NP_926961.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Gloeobacter
violaceus PCC 7421]
gi|81708482|sp|Q7NE65.1|MIAB_GLOVI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|35214589|dbj|BAC91956.1| glr4015 [Gloeobacter violaceus PCC 7421]
Length = 441
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 219/442 (49%), Gaps = 35/442 (7%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK 115
P +T + TFGC N++DSE MAG L+ GY + D S+ AD+ L NT + D K
Sbjct: 7 PQGKTACLVTFGCQMNKADSERMAGALTHLGYRIVDESDTADLVLFNTCTIRDNAEQKVY 66
Query: 116 S---------AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
S + P LV+AGCV Q G + L+ + + +V G Q ++R+ +++E +
Sbjct: 67 SYLGQQARRKQRDPHITLVLAGCVAQQEGEKLLRRVPELDLVMGPQHVNRLSDLLERVAE 126
Query: 161 GHEVRLLHRKKLPAL-DLPKVRRNKFVEILP-INVGCLGACTYCKTKHARGHLGSYTVES 218
G +V + + + L D+ K RR+ V I GC CTYC RG S T E+
Sbjct: 127 GEQV--VATEPIEILEDITKPRRDSAVTAWANIIYGCNEGCTYCIVPSVRGREQSRTPEA 184
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ + + A G KEV L ++ AYGRDIG NL LL + P G LR ++P
Sbjct: 185 IKAEICELGASGYKEVTLLGQNIDAYGRDIGTNLASLLR-FIHNAP--GIERLRFATSHP 241
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + L IA P V H+P QSG + VL M R YT +R +++ + ++P
Sbjct: 242 RYFSDEL--IATCAELPKVCEHFHIPFQSGDNEVLRRMARGYTHEKYRAIIEKIRAILPD 299
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D+I GFPGET+ F ++ L+ E +F ++ + + PRPGTPAAR VK
Sbjct: 300 AAISADLIVGFPGETEAQFENSLRLVDELEFDALNTAAYSPRPGTPAARWPGQLDDEVKQ 359
Query: 398 ---KRSRELTS--VFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVP-ST 450
+R+ L + FE YL GR E++ + E D +VG T+ V
Sbjct: 360 DRLQRTNRLVAQKAFERSQRYL---GRTEQVLVEETNPRDRSQVVGRTRTNRLVFFAGEL 416
Query: 451 GNMLGTSALVKITSVGRWSVFG 472
+ G V+IT+ +S+ G
Sbjct: 417 AKLRGQLVDVQITAARAFSLTG 438
>gi|154150044|ref|YP_001403662.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
gi|153998596|gb|ABS55019.1| MiaB-like tRNA modifying enzyme [Methanoregula boonei 6A8]
Length = 430
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/424 (31%), Positives = 220/424 (51%), Gaps = 38/424 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAM---DTLIAKCKSA 117
+Y++T+GC +N D+ + L +G + E+AD ++NT + + + + + SA
Sbjct: 25 VYIETYGCRYNFGDTANLVAVLKHYGSTVVPAPEDADAVVVNTCTVVGPTERRMLRRLSA 84
Query: 118 --KKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 175
+KPL V GC+P R+ + + V + +T++ L+
Sbjct: 85 LQEKPLFVTGCMPLVQRE----------AILAVCSPVIIHPDTIREASRALMTVG----- 129
Query: 176 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 235
++ V I+ I GCLG CTYC T+ ARG L S+ V+ + ++ + G E+
Sbjct: 130 -------SESVGIVQIAQGCLGRCTYCITRRARGPLRSFPVQEIRNKIEEYVRAGAYEIQ 182
Query: 236 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 295
L+++DT A+GRD G LP LL A+ + +P G+ LR+GM NP L L ++ +
Sbjct: 183 LTAQDTSAWGRDTGQRLPDLLTAL-SSIP--GNFRLRVGMMNPATTLGILDDLIDAFASD 239
Query: 296 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 355
++ F+H+PVQSGSD +L M R YT+ +F +V P + IATD I GFPGET+E
Sbjct: 240 RLFRFVHLPVQSGSDRILEQMGRGYTVREFEEIVSAFRGRYPDISIATDFIVGFPGETEE 299
Query: 356 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLG 415
DF++++ LI + +V+++++ PRP T K P AV K RSR L + E Y+
Sbjct: 300 DFSRSLELIGRIRPAKVNVTRYSPRPFTGPFEEKDFPDAVKKDRSRILNAYAEE--QYVA 357
Query: 416 ME----GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 471
+ G + +TE G ++ T Y Q LV +GT+A+V++ ++
Sbjct: 358 LNRPLLGTMVFCVVTEKIRPG-SVMARTASY-QGLVIGEELSVGTAAVVRLKKDRKYFFM 415
Query: 472 GEVI 475
G+++
Sbjct: 416 GDLL 419
>gi|395645589|ref|ZP_10433449.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
gi|395442329|gb|EJG07086.1| MiaB-like tRNA modifying enzyme [Methanofollis liminatans DSM 4140]
Length = 413
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/413 (31%), Positives = 216/413 (52%), Gaps = 39/413 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----LIAKCKS 116
+Y++T+GC++N +D+ +A L G + +EAD+ +INT + + ++ + ++
Sbjct: 9 VYIETYGCTYNHADTRKLALILEGQGCRIVAGPDEADVVVINTCTVIGKTERHMLRRIRA 68
Query: 117 -AKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV--EVVEETLKGHEVRLLHRKKLP 173
A + L V GC+P ++ I+G R++ E + E G ++
Sbjct: 69 FADRDLYVTGCMPV-------VQAAEILGAAPSARLLFPEEISERFCGACTGVVGGAG-- 119
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
I+ + GC G C YC T+ ARG L S E++ V ++ G E
Sbjct: 120 --------------IVQVAAGCAGRCAYCITRAARGPLRSRPKEAICREVEALVGRGAYE 165
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
V ++ +D A+G D+G LP L++A V+ LP G +LR+GM NP +A +L
Sbjct: 166 VQVTGQDVSAWGMDLGERLPALIDA-VSVLP--GDFLLRLGMMNPATAQGIAVPLARLLG 222
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
V+SF+H+PVQSGSDAVL+AM R YT +F +V + P ++I TD I G+P ET
Sbjct: 223 EAKVFSFVHLPVQSGSDAVLAAMRRGYTAGEFEAMVAAFRKACPEVRICTDFIVGYPTET 282
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--T 411
+EDF +++ L++ + +V+++++ PRPGTPAA +K +P + K RSR L + +
Sbjct: 283 EEDFAESMALLRAIRPEKVNVTRYSPRPGTPAAALKTMPERIAKDRSRILDAAAKEIYRE 342
Query: 412 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML-GTSALVKIT 463
+ G +T +G +V + Y +++VP GN L G V+IT
Sbjct: 343 QNAALVGETVEAVVTCRKKEG-SVVARDRAYREIVVP--GNFLPGERLNVRIT 392
>gi|448634564|ref|ZP_21674962.1| MiaB-like tRNA modifying enzyme [Haloarcula vallismortis ATCC
29715]
gi|445749537|gb|EMA00982.1| MiaB-like tRNA modifying enzyme [Haloarcula vallismortis ATCC
29715]
Length = 427
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 223/444 (50%), Gaps = 56/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPEAADVAILNTCTVLEKTERNMLARAKEL 64
Query: 118 KKP----LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K LV+ GC + QG +E + I + +LH
Sbjct: 65 DKETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLHWDD 100
Query: 172 LPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+P L P N V ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 101 VPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVE 160
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNP 278
+ R ++ G KE+ ++ +DTG YG D LP LL+ I ++ DG +R+GM NP
Sbjct: 161 KARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICTDI--DGDFRVRVGMANP 218
Query: 279 PFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 219 KGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLE 278
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
++TD I GFP E D +++ L++E + ++++++F RPGT AA MK + K
Sbjct: 279 YWTLSTDFIVGFPTEEPADHEESMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKK 338
Query: 398 KRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GN 452
RS+E++ Y M GR + + E D LVG+ + Y QV++ G
Sbjct: 339 DRSKEMSEAKMELMAEAYEEMVGRTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGL 397
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G + V+ITS FGE I+
Sbjct: 398 EIGDTVDVEITSHNTVYAFGEPIE 421
>gi|296109521|ref|YP_003616470.1| RNA modification enzyme, MiaB family [methanocaldococcus infernus
ME]
gi|295434335|gb|ADG13506.1| RNA modification enzyme, MiaB family [Methanocaldococcus infernus
ME]
Length = 411
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 207/379 (54%), Gaps = 33/379 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+Y++ +GC N++D+E + L G+ +T++ +EA+I +INT ++ M I
Sbjct: 3 VYVEGYGCVLNKADTEIIKESLIKEGFEITESLDEANIVIINTCVVRLETENKMMHRINY 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEVRL 166
S K ++VAGC+P+ ++ ++EG + ++ R E++++ L +G E L
Sbjct: 63 LNSLGKLVIVAGCLPKALKE--KVEGFYHIYPKEAHRAGEILKDILTKKKKEDRGEEKEL 120
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
KKL L + K V LPI+ GCLG C+YC K ARG L SY E LV + +
Sbjct: 121 Y--KKLNYL------KPKLVTPLPISEGCLGNCSYCIVKIARGKLISYPREFLVRKAEEL 172
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+ G K + ++++DT YG D G NL LL + +G ++R+GM + ++ L
Sbjct: 173 VKGGAKCLLITAQDTACYGLDRGDNLANLLKDLCQ---IEGEFIMRVGMMHAKYLSPILD 229
Query: 287 EIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
EI E+ R + FLH+P+QSG D +L M R Y++ +F ++V V + TD+
Sbjct: 230 EIIELYREEEKIGKFLHLPLQSGDDEILKLMGRGYSVDEFISIVKEFKRKVKDLCFTTDV 289
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
I GFPGET+E FN T+ ++++ K +H +++ R GT AARMK++ + + K+R+ L
Sbjct: 290 IVGFPGETEEAFNNTLEVLRKLKPDYIHGAKYTQRKGTEAARMKQLDTKIRKRRTEILDK 349
Query: 406 VFEAFT-----PYLGMEGR 419
+ + Y+G E R
Sbjct: 350 LRRELSYLNNKKYVGREMR 368
>gi|45357975|ref|NP_987532.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis S2]
gi|44920732|emb|CAF29968.1| Protein of unknown function UPF0004:Deoxyribonuclease/rho
motif-related TRAM [Methanococcus maripaludis S2]
Length = 425
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 196/362 (54%), Gaps = 20/362 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT-------QSAMDTLIA 112
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INT + M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 113 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 164
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDFSEKNNESTQ 122
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKERSEILN 358
Query: 405 SV 406
+
Sbjct: 359 EL 360
>gi|146296852|ref|YP_001180623.1| MiaB family RNA modification protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410428|gb|ABP67432.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 434
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 135/443 (30%), Positives = 232/443 (52%), Gaps = 40/443 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP 120
I T GC NQ +++ +A GY + D +EADI++INT + + K + A K
Sbjct: 3 IAFYTLGCKVNQYETQAIAETFERLGYEIVDFDQEADIYVINTCTVTNVSDRKSRQAIKR 62
Query: 121 ---------LVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHR 169
+VV GC PQ ++++++EGV I VG + +++VE V E LK +
Sbjct: 63 AKKTSPDSIVVVMGCYPQVYPQEVQKIEGVDIIVGTRDREKIVEYVTEYLK-------QK 115
Query: 170 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 217
KK+ A++ + +R+ F E+ + I GC C+YC +ARG + S ++
Sbjct: 116 KKILAVN-NEYKRDTFEELKISSFNERTRAFIKIEEGCEQFCSYCIIPYARGSVVSRSLS 174
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 276
S++ V+ + ++G KE ++ + AYG+D+ + + L ++ E+ + +R+
Sbjct: 175 SILDEVQRLASNGYKEFVITGINISAYGKDL--DYKVTLVDVIEEISKIEKVRRIRLSSL 232
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E I +++ + LH+ +QSGSD +L MNR YT ++R +V+ +
Sbjct: 233 EPIVMKEDF--IKRLVKIEKLCHHLHLSLQSGSDKILKLMNRHYTTDEYRQIVEMVRGYW 290
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
+ TDII GFPGE+DEDF +TV +KE F ++H+ +F P+ GT A M +V SA
Sbjct: 291 NDVAFTTDIIVGFPGESDEDFERTVEFVKEIGFSRIHVFRFSPKKGTNAYNMPYQVNSAE 350
Query: 396 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
+KRS L SV +F + EG++ + I E ++ + G++ Y++ LVP T ++
Sbjct: 351 KEKRSEILKSVARKLSFGFHKKFEGKIVDVLIEENSSLEGYFEGYSGNYIRTLVPKTESI 410
Query: 454 -LGTSALVKITSVGRWSVFGEVI 475
+G VK+ V G++I
Sbjct: 411 RVGEIYKVKVKEAFEQYVIGDII 433
>gi|448667822|ref|ZP_21686190.1| MiaB-like tRNA modifying enzyme [Haloarcula amylolytica JCM 13557]
gi|445769143|gb|EMA20219.1| MiaB-like tRNA modifying enzyme [Haloarcula amylolytica JCM 13557]
Length = 427
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 222/442 (50%), Gaps = 52/442 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNMLARAKEL 64
Query: 118 KKP----LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
K LV+ GC+ L + E V + +LH +P
Sbjct: 65 DKETPADLVITGCMA-----LAQGEEFQTADV-----------------DAEVLHWDDVP 102
Query: 174 ALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
L P N V ILPI GC+ C+YC TK A G + S +VE V +
Sbjct: 103 QYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVEKA 162
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM NP
Sbjct: 163 RALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANPKG 220
Query: 281 ILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ +E+A V +H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 221 LHGVREELARVFAKHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDHLDYW 280
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
++TD I GFP E D Q++ L++E + ++++++F RPGT AA MK + K R
Sbjct: 281 TLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDR 340
Query: 400 SRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNML 454
S+E++ Y M G + + E D LVG+ + Y QV++ G +
Sbjct: 341 SKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGLEI 399
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G + V+ITS FGE ++
Sbjct: 400 GDTVDVEITSHNTVYAFGEPVE 421
>gi|340623599|ref|YP_004742052.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
gi|339903867|gb|AEK19309.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis X1]
Length = 425
Score = 194 bits (494), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 129/431 (29%), Positives = 221/431 (51%), Gaps = 25/431 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT-------QSAMDTLIA 112
IY++ +GC+ N +D++ + ++ F + LTDN +++DI +INT + M + I
Sbjct: 3 IYIEGYGCTLNTADTQIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 113 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 164
KS K +VVAGC+ + S+ ++ L V I+ G D++++ E
Sbjct: 63 YFKSLDKKVVVAGCMAKALSKKIENLADVLIMPREAQHSGNILKDKLLKDCSEKNNESTQ 122
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
L KL + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDKLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKSGTKCLLVTAQDTACYGLDNSDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ E + V FLH+P+QSG + VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDNQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILN 358
Query: 405 SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+ + Y + + + + D + + + K ++ +G VKIT
Sbjct: 359 ELRRELS-YENNKRHIGETFEILVTKDNMGVTDNCKN----VIFEESAKIGEFKRVKITG 413
Query: 465 VGRWSVFGEVI 475
+ + G++I
Sbjct: 414 AKTFGLSGKLI 424
>gi|354610327|ref|ZP_09028283.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
gi|353195147|gb|EHB60649.1| MiaB-like tRNA modifying enzyme [Halobacterium sp. DL1]
Length = 417
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 142/436 (32%), Positives = 217/436 (49%), Gaps = 45/436 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + +L G+ D + AD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDAADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-----TLKGHEVRLLHR 169
S L+V GC+ + E V V D V E V T G E
Sbjct: 65 ESETADLIVTGCMALAQGEEFRAENVD-AQVLHWDEVPEAVTNGECPTTTPGAE------ 117
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
P LD + ILPI GC+ C+YC TK A G + S VE V + R ++
Sbjct: 118 ---PVLD-------GVIGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHA 167
Query: 230 GVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
G KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+
Sbjct: 168 GAKEIRITGQDTGVYGWDNGDRKLPELLDRIATEI--DGDFRVRVGMANPGGVHGIREEL 225
Query: 289 AEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
AEV H +Y+FLH PVQSGSD VL M R++ + + +V+T + + ++TD I
Sbjct: 226 AEVFAEHDEIYNFLHAPVQSGSDDVLEDMRRQHEVEQYVDIVETFDDYLEEWTLSTDFIV 285
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-- 405
GFP ETD D Q++ L++E + ++++++F RPGT AA MK + K RS+ ++
Sbjct: 286 GFPTETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKKDRSKAMSDLK 345
Query: 406 ---VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSAL 459
V EA +G E R+ +TE G + + Y QV+V P G G A
Sbjct: 346 MDVVAEAHEEMVGTE---RRVLVTEQGT-GDSVKCYDDSYRQVIVQNAPEYGLEPGDFAT 401
Query: 460 VKITSVGRWSVFGEVI 475
V+I FGE I
Sbjct: 402 VEIVGHQTVYAFGEPI 417
>gi|389848049|ref|YP_006350288.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|448618147|ref|ZP_21666492.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|388245355|gb|AFK20301.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
gi|445747702|gb|ELZ99157.1| MiaB-like tRNA modifying enzyme [Haloferax mediterranei ATCC 33500]
Length = 430
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 228/434 (52%), Gaps = 39/434 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + L G+ D EEAD+ ++N+ + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNSCTVVEKTERNMLRRAKEL 64
Query: 118 KKP---LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
++ L+V GC + QG +E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFREEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRVGMANPGGVHGIRQELADV 228
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
H +Y+F+H PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P
Sbjct: 229 FAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETDED ++++L++E ++++++F RPGT AA +K + + K+RS+E++
Sbjct: 289 TETDEDHAKSMDLLREVHPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSETKMDI 348
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V A+ +G E V + + E D + + Y Q++V + G G A VK+
Sbjct: 349 VAAAYEDMVGTEHDV--LVVEEGTGDSVKC--RDEAYRQIIVQNASEHGLEPGDFARVKV 404
Query: 463 TSVGRWSVFGEVIK 476
T+ FGE+++
Sbjct: 405 TAHQTVYAFGELVE 418
>gi|448641016|ref|ZP_21677803.1| hypothetical protein C436_13580 [Haloarcula sinaiiensis ATCC 33800]
gi|445761541|gb|EMA12789.1| hypothetical protein C436_13580 [Haloarcula sinaiiensis ATCC 33800]
Length = 427
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 225/444 (50%), Gaps = 56/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNMLARAKEL 64
Query: 116 SAKKP--LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
++ P LV+ GC + QG +E + I + +LH
Sbjct: 65 DSETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLHWDD 100
Query: 172 LPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+P L P N V ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 101 VPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVE 160
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNP 278
+ R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM NP
Sbjct: 161 KARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANP 218
Query: 279 PFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 219 KGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLD 278
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
++TD I GFP E D Q++ L++E + ++++++F RPGT AA MK + K
Sbjct: 279 YWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKK 338
Query: 398 KRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GN 452
RS+E++ Y M G + + E D LVG+ + Y QV++ G
Sbjct: 339 DRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGL 397
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G + V+ITS FGE I+
Sbjct: 398 EIGDTVDVEITSHNTVYAFGEPIE 421
>gi|448679050|ref|ZP_21689887.1| MiaB-like tRNA modifying enzyme [Haloarcula argentinensis DSM
12282]
gi|445771148|gb|EMA22205.1| MiaB-like tRNA modifying enzyme [Haloarcula argentinensis DSM
12282]
Length = 427
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 135/444 (30%), Positives = 222/444 (50%), Gaps = 56/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNMLARAKEL 64
Query: 118 KKP----LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
LV+ GC + QG +E + I + +LH
Sbjct: 65 DNETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLHWDD 100
Query: 172 LPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+P L P N + ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 101 VPQYVLNGECPTITPDTETVLNGVIGILPIARGCMSDCSYCITKQATGRIESPSVEENVE 160
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNP 278
+ R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM NP
Sbjct: 161 KARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANP 218
Query: 279 PFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 219 KGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDHLD 278
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
++TD I GFP E D Q++ L++E + ++++++F RPGT AA MK + K
Sbjct: 279 YWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKK 338
Query: 398 KRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GN 452
RS+E++ Y M GR + + E D LVG+ + Y QV++ G
Sbjct: 339 DRSKEMSEAKMELMAEAYEEMVGRTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGL 397
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G + V ITS FGE ++
Sbjct: 398 EIGDTVEVAITSHNTVYAFGEPVE 421
>gi|330506789|ref|YP_004383217.1| hypothetical protein MCON_0563 [Methanosaeta concilii GP6]
gi|328927597|gb|AEB67399.1| conserved hypothetical protein [Methanosaeta concilii GP6]
Length = 437
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 221/448 (49%), Gaps = 53/448 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKS 116
Y++TFGC+ N +S+ +A L G+ + +EAD+ ++NT + + ++ + +
Sbjct: 3 FYIETFGCTSNFGNSQDLAEALREMGH-IPSGLKEADMVIVNTCAVTERTERKILRRLRQ 61
Query: 117 AK-KPLVVAGC----VPQGSRDL---------KELEGVSIVGV-------------QQID 149
+ + LVVAGC +PQ + L + + I G+ Q+
Sbjct: 62 LEGERLVVAGCLAAAIPQSIQTLCCRGRLGPLSQGDAARIAGLFDGWLMPSQHMQSGQLQ 121
Query: 150 RVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 209
EE L+ + + R+ P + I+ + GC G+C+YC ARG
Sbjct: 122 SQNFQSEEMLRERHIAVHLRESSPG--------GESCGIVNVADGCNGSCSYCIVSKARG 173
Query: 210 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 269
L S VE +V V + G E+ +S++DT A+G DIG +L LL + E+P G
Sbjct: 174 RLKSRPVEDVVLAVERLAQLGTAEIQISAQDTAAFGSDIGSDLAGLLETLT-EIP--GDF 230
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
MLR+GM NP + E + P +Y FLH+PVQSGSD +L M R YT +F +V
Sbjct: 231 MLRVGMMNPDSARLIQNRLIEAFQSPKIYRFLHIPVQSGSDEILQRMGRVYTSDEFFELV 290
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
P + I TDII GFPGETD+DF ++++LI+ + +V+I++F PRPGT AA +
Sbjct: 291 SAFRFAYPDISIITDIIVGFPGETDKDFEESMSLIERLQPDKVNITRFSPRPGTSAASLY 350
Query: 390 KVPSAVVKKRSRELTSVFEAFTP-----YLGMEGRVERIWITEIAADGIHLVGHTKGYVQ 444
+P + K RSRE+T ++ YL G+V +TE D + + Y
Sbjct: 351 DMPDRIKKDRSREMTRLWLEIAERRNRRYL---GKVLHALVTECGRDKT-MKARSANYAG 406
Query: 445 VLVPSTGNMLGTSALVKITSVGRWSVFG 472
+++P + LG +KI + + G
Sbjct: 407 IVIPGALD-LGRWCQIKIMETTPYYLSG 433
>gi|55379963|ref|YP_137813.1| hypothetical protein rrnAC3428 [Haloarcula marismortui ATCC 43049]
gi|55232688|gb|AAV48107.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 427
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 225/444 (50%), Gaps = 56/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNMLARAKEL 64
Query: 116 SAKKP--LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
++ P LV+ GC + QG +E + I + +LH
Sbjct: 65 DSETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLHWDD 100
Query: 172 LPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+P L P N V ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 101 VPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVE 160
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNP 278
+ R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM NP
Sbjct: 161 KARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANP 218
Query: 279 PFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 219 KGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLD 278
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
++TD I GFP E D Q++ L++E + ++++++F RPGT A MK + + K
Sbjct: 279 YWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDADNMKGLGGQIKK 338
Query: 398 KRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GN 452
RS+E++ Y M G + + E D LVG+ + Y QV++ G
Sbjct: 339 DRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGL 397
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G + V+ITS FGE I+
Sbjct: 398 EIGDTVDVEITSHNTVYAFGEPIE 421
>gi|344210946|ref|YP_004795266.1| MiaB-like tRNA modifying enzyme [Haloarcula hispanica ATCC 33960]
gi|343782301|gb|AEM56278.1| MiaB-like tRNA modifying enzyme [Haloarcula hispanica ATCC 33960]
Length = 427
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/444 (30%), Positives = 223/444 (50%), Gaps = 56/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNMLARAKEL 64
Query: 118 KKP----LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K LV+ GC + QG +E + + + +LH
Sbjct: 65 DKETPADLVITGCMALAQG----EEFQSADV--------------------DAEVLHWDD 100
Query: 172 LPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+P L P N V ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 101 VPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVE 160
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNP 278
+ R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM NP
Sbjct: 161 KARALVHAGAKEIRITGQDTGVYGWDTNKGTSLLPELLDRICSDI--DGDFRVRVGMANP 218
Query: 279 PFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 219 KGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDHLD 278
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
++TD I GFP E D +++ L++E + ++++++F RPGT AA MK + K
Sbjct: 279 YWTLSTDFIVGFPTEEPADHEESMALLRETRPEKINVTRFSKRPGTDAADMKGLGGQTKK 338
Query: 398 KRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GN 452
RS+E++ Y M G + + E D LVG+ + Y QV++ G
Sbjct: 339 DRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGL 397
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G + V+ITS FGE I+
Sbjct: 398 EIGDTVDVEITSHNTVYAFGEPIE 421
>gi|149183373|ref|ZP_01861809.1| YmcB [Bacillus sp. SG-1]
gi|148848916|gb|EDL63130.1| YmcB [Bacillus sp. SG-1]
Length = 521
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 141/442 (31%), Positives = 219/442 (49%), Gaps = 31/442 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG A GY TDN+++AD+ L+NT ++A + + +
Sbjct: 69 FYIRTYGCQMNEHDTEVMAGIFMALGYEATDNTDDADVILLNTCAIRENAENKVFGELGH 128
Query: 117 AK-----KPLV---VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 161
K KP + V GC+ Q ++ LK V ++ G I R+ ++ E K
Sbjct: 129 LKHLKREKPELLIGVCGCMSQEESVVNKILKTYHQVDMIFGTHNIHRLPNILNEAYMSKA 188
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 189 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 248
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G +EV L ++ AYG+DI L ++ EL +R ++P
Sbjct: 249 EVRHLAAQGYQEVTLLGQNVNAYGKDIEDLENYGLGDLMDELRKIDIPRIRFTTSHPRDF 308
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS AVL M R+YT F +V + +PG+ +
Sbjct: 309 DDHLIEV--LAKKGNLVEHIHLPVQSGSSAVLKIMARKYTRERFLELVGKIKAAMPGVAL 366
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+R
Sbjct: 367 TTDIIVGYPNETEEQFEETLSLYREVGFESAFTYIYSPREGTPAAKMNDNVPMEVKKERL 426
Query: 401 RELTSVF-----EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNML 454
+ L + EA Y EG++ + + E + L G+T+ V + +
Sbjct: 427 QRLNQLVNEYSGEALKQY---EGKIVEVLVEGESKKNPEILAGYTRRSKLVNFKAPKTAI 483
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G VKIT WS+ GE+I+
Sbjct: 484 GKIVKVKITDTKSWSLNGEMIE 505
>gi|294102364|ref|YP_003554222.1| MiaB family RNA modification protein [Aminobacterium colombiense
DSM 12261]
gi|293617344|gb|ADE57498.1| RNA modification enzyme, MiaB family [Aminobacterium colombiense
DSM 12261]
Length = 440
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 219/442 (49%), Gaps = 32/442 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS------ 116
+K +GC N D + + L G+ T + EEADI + N S K S
Sbjct: 6 LKVYGCQMNVYDGDKLRTALIRNGWQET-SEEEADIVIFNGCSIRAKAEHKVWSELGRYG 64
Query: 117 -----AKKPLV-VAGCVPQ--GSRDLKELEGVSIVG-VQQIDRVVEVVEETLKGHEVRLL 167
KKP V V GC+ Q GS + V +VG + I + E +E + G V LL
Sbjct: 65 ESWSDKKKPFVAVTGCIAQRLGSAMMTRFPWVRLVGGPRHIGDLPEALERVMAGERVSLL 124
Query: 168 HRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+DL P R N + + I GC CTYC + RG S E ++ +R
Sbjct: 125 DEDSRAFVDLAVPPIERVNPWKAYVTIAHGCDNFCTYCIVPYVRGRFVSRFPEDILVEIR 184
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ DGVKE+ L ++ +YG+D G LL + A DG ++R ++P
Sbjct: 185 GLVEDGVKEITLLGQNVNSYGQDFKNGYTFSSLLRDVAA---IDGLPLIRFVTSHPK--- 238
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ +I EV+ HP + +++P+QSGSD +L MNR+YTL+ +R V + +P + +
Sbjct: 239 DFTPDIVEVMAHHPKICPSINLPIQSGSDRILKKMNRKYTLAKYRETVSVIRNALPEVGL 298
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+EDF +V + E+++ VH + + PR GT A+ M+ ++ V KR
Sbjct: 299 TSDLIVGFPGETEEDFQASVAALHEFRYDLVHTAAYSPREGTAASTMEDQIDQDVKMKRL 358
Query: 401 RELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTS 457
+ +V A G+ G+ +I I + A G LV G T G V++ T +G
Sbjct: 359 NTVNAVQSEIALQINRGLVGKRYKILIDDWAPKGESLVQGRTPGDKVVIMEGTEEFIGRF 418
Query: 458 ALVKITSVGRWSVFGEVIKILN 479
ALV ITS W + GEVI I++
Sbjct: 419 ALVSITSAENWCLHGEVISIID 440
>gi|410670393|ref|YP_006922764.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
gi|409169521|gb|AFV23396.1| MiaB-like tRNA modifying enzyme [Methanolobus psychrophilus R15]
Length = 440
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/427 (29%), Positives = 218/427 (51%), Gaps = 33/427 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+++ TFGCS +Q+ +E M + G+AL S+ AD+ +INT + + +I +
Sbjct: 3 VHVATFGCSASQASAEIMRAIVRDKGHALVPLSD-ADVLVINTCTVKYATEQKILHIIRE 61
Query: 114 CKSAKKPLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
+ K ++V GC+P+ + +++ I+GV + RV E+++ K + R +
Sbjct: 62 AADSGKEVIVTGCMPEVQLEDIMEQNPQAHILGVNSVSRVGELLDSLGKTGKGGAKGRMQ 121
Query: 172 L------PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ +P++R N + I ++ GC +C+YC ARG L S+ E ++ +R
Sbjct: 122 IFLHQPEGFQSVPRIRYNPNIHICQLSQGCNYSCSYCIVSVARGKLRSFGPEEIIADIRR 181
Query: 226 VIADGVKEVWLSSEDTGAYGRD-----IGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+++G +E+WL+S+D G YG D + LP LL I +P G +R+GM NP
Sbjct: 182 AVSEGCREIWLTSQDNGQYGTDRRGTGKDILLPELLRMICT-IP--GQFRVRVGMMNPFS 238
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+L L ++ + + VY LH+P+QS SD VL MNR +++ + V+ +
Sbjct: 239 VLPVLYDLLDAFDNEKVYKLLHLPIQSASDGVLRNMNRYHSIQEANHVIRQFRNKFDDLT 298
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
+ TDII GFPGET+EDF ++V ++E++ +V+IS++ PRP T A S ++ +RS
Sbjct: 299 LFTDIIVGFPGETEEDFKKSVKWVEEFRPDKVNISRYTPRPRTKAWDFHNSDSRILTRRS 358
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
EL + F +G EG V E G + T Y+ V++P G
Sbjct: 359 NELHRICRSTKFATKNKLIGWEGNV--FLSKEAKKQGT--MARTDSYLPVVIPQCDLEPG 414
Query: 456 TSALVKI 462
+ V I
Sbjct: 415 VTCRVLI 421
>gi|134046253|ref|YP_001097738.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C5]
gi|132663878|gb|ABO35524.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C5]
Length = 425
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 205/378 (54%), Gaps = 29/378 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT-------QSAMDTLIA 112
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INT + M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 113 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETL-------KGHEV 164
KS K +VVAGC+ + + +K L V +V ++ +++++ L G
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKTLADV-LVMPREAQYSGKILKDNLLKGCSEKNGKSN 121
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
L+ + + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 122 ENLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLASYDRDLIVKKAE 181
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V++ + + TD
Sbjct: 239 LDELIESFKSKKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLNEFKSKIKNLNFTTD 298
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS---- 400
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAILKQVDTKIRKERSEILN 358
Query: 401 ---RELTSVFEAFTPYLG 415
REL+ +E T ++G
Sbjct: 359 ELRRELS--YENNTRHIG 374
>gi|150403330|ref|YP_001330624.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C7]
gi|150034360|gb|ABR66473.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C7]
Length = 425
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 193/362 (53%), Gaps = 20/362 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDNSEEADIWLINT-------QSAMDTLIA 112
IY++ +GC+ N +D+E + ++ F + L DN +++DI +INT + M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEEFELADNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 113 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIV-------GVQQIDRVVEVVEETLKGHEV 164
KS K +VVAGC+ + + +K L V I+ G+ D +++ E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKDNLLKECSEKYNEYNQ 122
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
L L + KV + LPI GCLG+CTYC K ARG+L SY + +V +
Sbjct: 123 NLNFEDNLNE-KIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIVKKAE 181
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ G K + ++++DT YG D NL L++ I +E+P + +RIGM + F
Sbjct: 182 ELVKTGTKCLLVTAQDTACYGLDNKDNLSNLIDDI-SEIPEKFA--MRIGMMHAKFAEPI 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ E + V FLH+P+QSG D VL MNR YT+ ++ +V+D + + TD
Sbjct: 239 LDELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYTVDEYISVLDEFKSKIKNLNFTTD 298
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
+I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 299 VIVGFPTETEEAFENTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILN 358
Query: 405 SV 406
+
Sbjct: 359 EL 360
>gi|448654485|ref|ZP_21681411.1| hypothetical protein C435_09909 [Haloarcula californiae ATCC 33799]
gi|445766333|gb|EMA17460.1| hypothetical protein C435_09909 [Haloarcula californiae ATCC 33799]
Length = 427
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 135/444 (30%), Positives = 225/444 (50%), Gaps = 56/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNMLARAKEL 64
Query: 116 SAKKP--LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
++ P LV+ GC + QG +E + I + +LH
Sbjct: 65 DSETPADLVITGCMALAQG----EEFQSADI--------------------DAEVLHWDD 100
Query: 172 LPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+P L P N V ILPI GC+ C+YC TK A G + S +VE V
Sbjct: 101 VPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGRIESPSVEENVE 160
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNP 278
+ R ++ G KE+ ++ +DTG YG D LP LL+ I +++ DG +R+GM NP
Sbjct: 161 KARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICSDI--DGDFRVRVGMANP 218
Query: 279 PFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ VV+TL + +
Sbjct: 219 KGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVVETLDDQLD 278
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
++TD I GFP E D Q++ L++E + ++++++F RPGT A MK + + K
Sbjct: 279 YWTLSTDFIVGFPTEEPADHEQSMALLRETRPEKINVTRFSKRPGTDADDMKGLGGQIKK 338
Query: 398 KRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GN 452
RS+E++ Y M G + + E D LVG+ + Y QV++ G
Sbjct: 339 DRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGL 397
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G + V+ITS FGE ++
Sbjct: 398 EIGDTVDVEITSHNTVYAFGEPVE 421
>gi|119719528|ref|YP_920023.1| RNA modification protein [Thermofilum pendens Hrk 5]
gi|119524648|gb|ABL78020.1| RNA modification enzyme, MiaB family [Thermofilum pendens Hrk 5]
Length = 428
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 141/438 (32%), Positives = 220/438 (50%), Gaps = 37/438 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAMDTLIAKCKSA 117
+Y++TFGC N+ +S MA L G+ + ++ E AD+ ++NT + +T I +
Sbjct: 4 VYIETFGCWLNKGESNIMATLLKRRGHKVVESIENADVVILNTCAVRGDTETKIFRRLRE 63
Query: 118 KKP--------LVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVR 165
+ LVV+GC+ P+ D+ S+V I+++ EVVE K VR
Sbjct: 64 LEELRQKRGFRLVVSGCLVNVRPKSILDVAP--SASLVEPDAIEKIPEVVESEDKLLIVR 121
Query: 166 LLH--RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGR 222
R LP V ++PI GCLG+C +C RG + SY ++ ++
Sbjct: 122 QYKASRNVLPDYS------GGAVHVVPIESGCLGSCAFCIEWVTRGTGVKSYPIDVIIEN 175
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
VR ++ G +E++L+ +D AYG D+G NL L+ I+ E+ DG +R+GM P +
Sbjct: 176 VRAAVSKGAREIFLTGQDVAAYGYDLGTNLYELVKRILEEV--DGEYRVRLGMMEPMLLG 233
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
LK + E+ R +Y + H+P QSG D VL M R+YT+ +++ +V+T+ I
Sbjct: 234 RFLKNLLELFRDERLYRYFHIPAQSGDDKVLRLMRRKYTVEEYKGIVNTIRGSGWKFSIV 293
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR- 401
TDII GFPGE + +F T+ ++E F +VH++++ RP T M VP V K+RSR
Sbjct: 294 TDIIVGFPGEGEAEFQNTLKFLREVMFDKVHVARYTFRPFTEGYVMSGVPEPVKKQRSRL 353
Query: 402 ----ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L +E Y+G E V T I D LVG T Y V++ +G
Sbjct: 354 ASRVALEVAYEINRSYVGEEREVVVE-GTSIRGD---LVGRTIEYKPVVIKDQEARVGEI 409
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI S+ G+V+
Sbjct: 410 VRVKIVDATPVSLIGKVL 427
>gi|448415535|ref|ZP_21578265.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
gi|445680488|gb|ELZ32932.1| miab-like tRNA modifying enzyme [Halosarcina pallida JCM 14848]
Length = 423
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 223/434 (51%), Gaps = 39/434 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ + EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
S L++ GC+ QG +E I+ + V E G
Sbjct: 65 ESETADLIITGCMALAQGEEFREEEVDAQILHWDDVPSAVTNGECPTPGPGTE------- 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL I +E+ DG +R+GM NP I +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLPELLERICSEI--DGDFRVRLGMANPGGIHGIHEELADV 228
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
RH +Y+F+H+PVQSGSDAVL M R++ ++ F VV+T + ++TD I GFP
Sbjct: 229 FDRHEKLYNFIHLPVQSGSDAVLEEMRRQHRVAKFLEVVETFDRELDYWTLSTDFIVGFP 288
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ET+ D Q++ L +E + +V++++F RPGT AA MK + V K+RS+ ++
Sbjct: 289 SETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMDV 348
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V EA+ +G RV + + E D + + Y Q++V + G G V++
Sbjct: 349 VAEAYEAMVGETHRV--MAVEEGTGDSVKC--RDEAYRQIIVRNASERGVEPGDFLDVEV 404
Query: 463 TSVGRWSVFGEVIK 476
TS FG+ ++
Sbjct: 405 TSHQTVYAFGDPVR 418
>gi|220932005|ref|YP_002508913.1| MiaB family RNA modification protein [Halothermothrix orenii H 168]
gi|219993315|gb|ACL69918.1| RNA modification enzyme, MiaB family [Halothermothrix orenii H 168]
Length = 450
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 217/441 (49%), Gaps = 34/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------I 111
++ T+GC N DSE +AG L GY T+N EEADI ++NT + +
Sbjct: 7 FILTYGCQMNVHDSEKLAGMLEEMGYKSTNNLEEADIIMVNTCAVRENAELRVFGRVGDF 66
Query: 112 AKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE--ETLKGH 162
+ K L+ V GC+ Q + ++L I G I + E+++ + +G
Sbjct: 67 KRLKEKNPDLIIGVGGCMMQIDENARKLYEKYPHVDLIFGTHNIHHIPELIKRIKEERGR 126
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + ++++ D+P R + F + I GC CTYC + RG S ++
Sbjct: 127 IIEVWNQEEGLIPDIPYKREDDFKAWISIIQGCNNFCTYCIVPYVRGRERSRPAADIISE 186
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
R + ++GVKE+ L ++ +YG+D+ ++ LL + +G +R ++P
Sbjct: 187 ARKLASEGVKEITLLGQNVNSYGKDLKEDIDFADLLKRLNR---VEGIKRIRYMTSHPRD 243
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + +I + C + H+PVQSGS +L MNR YT +++ ++ + +P
Sbjct: 244 FSDKMIKIIKECDKVCEH--FHLPVQSGSTRILKKMNRGYTQAEYLNLIKKIKSQIPDYS 301
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
I TDII GFPGET+EDF +T+ +I+E +F + ++ PR GTPAAR K S +K+
Sbjct: 302 ITTDIIVGFPGETEEDFQETLKVIREVRFDMAYTFKYSPRKGTPAARHKDQVSEKIKQDR 361
Query: 401 RELTSVFE-----AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNML 454
LT + E + ++G+ + I E + G T+ V+VP N+
Sbjct: 362 --LTRLIEVQNSISLENNRKLKGKTVEVLIEGESRNNPDTFEGRTRTNKLVIVPRNENLK 419
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G A VKI VG W+++GEVI
Sbjct: 420 GQIANVKINRVGSWTLYGEVI 440
>gi|375085640|ref|ZP_09732272.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
gi|374567051|gb|EHR38283.1| MiaB-like tRNA modifying enzyme [Megamonas funiformis YIT 11815]
Length = 433
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 218/442 (49%), Gaps = 39/442 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
+ + T GC NQ ++E M G GY + D SE AD ++INT S LI +
Sbjct: 4 VALTTLGCKVNQVETEIMEGLFRNRGYEIVDFSEPADFYIINTCSVTHLGERKSRQLIRR 63
Query: 114 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 162
++A GC Q S ++ ++EGV +V G +Q D++V++VE+ + +
Sbjct: 64 ANRLNDNAIIAVTGCYAQIASDEISKIEGVRVVIGTKQRDKIVDLVEKAAREDGLFNEVN 123
Query: 163 EVRLLHR-KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+V +H + +P P R L I GC C+YC + RG + S +ES+
Sbjct: 124 DVMHMHEFEDIPLYGTPHRTR----AFLKIQDGCCNFCSYCIIPYTRGPIRSRKLESIKT 179
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
V ++ + E+ + GAYGRD G N+ L +A+ L + LR+G
Sbjct: 180 AVDQLVEENFHEIVFTGIHLGAYGRDFKGENIS-LSDAVEICLANENLKRLRLGSLESIE 238
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
I L E+ + H LH+P+Q+GSD +L AMNR YT +F +++ + VP +
Sbjct: 239 ISPRLLELVKT--HKRFTKHLHLPLQAGSDEILKAMNRHYTTEEFARLIENIRREVPDIA 296
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
I+TDII GFPGETDE F +++ K F ++H+ + R GTPAA+M VKK+
Sbjct: 297 ISTDIIVGFPGETDELFQKSLEFAKSMGFMKMHVFPYSKRAGTPAAKMTNQIDEAVKKQR 356
Query: 401 RELT------SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
L S E + +LG E V + E DG ++ G T Y++V + + G +
Sbjct: 357 VHLMQKMAEQSAVEFYQRFLGRELEV----LFEQEQDG-YMEGLTSNYIRVYIKNDGEIT 411
Query: 455 -GTSALVKITSVGRWSVFGEVI 475
G LVK+ + + + GE+I
Sbjct: 412 SGDIRLVKLVKLFKDGILGELI 433
>gi|317490506|ref|ZP_07948986.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
gi|316910399|gb|EFV32028.1| MiaB family RNA modification enzyme [Eggerthella sp. 1_3_56FAA]
Length = 452
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 217/454 (47%), Gaps = 50/454 (11%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAMDT------- 109
T ++TFGC N+ DSE +AG L G D E+ADI T + A DT
Sbjct: 2 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 61
Query: 110 ------LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
L A +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 62 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 121
Query: 161 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 122 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 181
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 182 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 239
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 240 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 297
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M P V++
Sbjct: 298 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 357
Query: 398 KRSRELTSV-----FEAFTPYLG------MEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
+R L + FEA LG +EG +R D L G + V
Sbjct: 358 QRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKR--------DERLLAGKSPKNQTVH 409
Query: 447 VPSTG-----NMLGTSALVKITSVGRWSVFGEVI 475
P+ ++ G++ V++ W + GE++
Sbjct: 410 APAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 443
>gi|319790575|ref|YP_004152208.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
gi|317115077|gb|ADU97567.1| RNA modification enzyme, MiaB family [Thermovibrio ammonificans
HB-1]
Length = 442
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 217/439 (49%), Gaps = 33/439 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
++KTFGC N +DSE MAG L GY EEADI ++NT S + I
Sbjct: 5 FFIKTFGCQMNVNDSEKMAGLLRDMGYEKAQTPEEADIVIVNTCSVRAKPDNKAYSFIGN 64
Query: 114 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-GHEVR 165
K KK + VAGCVPQ ++ + V +V G ++ +++E + G V
Sbjct: 65 LKRLKKRRPDLVVAVAGCVPQKEKEQILRFPHVDLVFGTFNFVKLPQLLERVKREGRVVE 124
Query: 166 LLHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+L+RK KLP +D N F+ + + GC CTYC RG S +V
Sbjct: 125 ILNRKIPEEEKLPLVD--SYLENPFIAYVTVQRGCNRFCTYCIVPFTRGRERSVAPHLVV 182
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
V+ + GVKEV L ++ YG G +L LL +V+E+ +G +R ++P
Sbjct: 183 EEVKRLAERGVKEVHLLGQNVDFYGYQ-GTDLADLL-YMVSEV--EGVERVRFTTSHPAG 238
Query: 281 ILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
E IA +R P V ++H+P QSGS+ VL MNR YT ++ V L E VP +
Sbjct: 239 FSER---IARAIRDIPKVCPYVHLPPQSGSNRVLERMNRGYTREEYIEKVQMLREFVPNV 295
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
++ D I GFPGET+EDF QT++L++E F Q + ++ PRP T AA K VP V +
Sbjct: 296 ALSGDFIVGFPGETEEDFEQTLSLVEECVFDQAFVFEYSPRPFTKAATFKDDVPKEVKNR 355
Query: 399 RSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
R + L + +A L G+VE + I + G L G T V V + ++G
Sbjct: 356 RLQTLQELVKKQALERNLERVGKVEEVLIEGFSPKGSELYGRTADNKPVAVEGSEELIGK 415
Query: 457 SALVKITSVGRWSVFGEVI 475
+ V+IT + + G+ +
Sbjct: 416 TVEVEITQASPFFLKGKPV 434
>gi|347753157|ref|YP_004860722.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347585675|gb|AEP01942.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 450
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 225/447 (50%), Gaps = 32/447 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E M GY TD AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAMWQLFKKAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
V V GC Q S ++ E+ GV +V G Q +++ +E+ LK +
Sbjct: 63 RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +++P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG+D+ NL +LL + E G +RI +
Sbjct: 182 QKLVNAGYKELVLTGIHTGGYGQDLKDYNLAMLLKDL--EEKVQGLKRVRISSIEASQLT 239
Query: 283 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ +V++H V +HVP+QSGSD VL M R+YT+ F + L E +PG+ +
Sbjct: 240 D---EVIDVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE++F ++H+ + PR GTPAARMK ++ + +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWI------TEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+ ++ + + E + + E G++ G+T Y++V+ P+T +M+
Sbjct: 357 HRMIALSDQLAKEYASQFENEVLEVIPEEPFKEDPESGLY-EGYTDNYLKVVFPATPDMV 415
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQV 481
G VKIT G + +++++ V
Sbjct: 416 GKLVKVKITKAGYPYNEAQFVRVMDDV 442
>gi|448611787|ref|ZP_21662217.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
gi|445742548|gb|ELZ94042.1| MiaB-like tRNA modifying enzyme [Haloferax mucosum ATCC BAA-1512]
Length = 430
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 229/440 (52%), Gaps = 39/440 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 118 KKP---LVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
++ L+V GC+ QG E I+ + V E G V
Sbjct: 65 EQETADLIVTGCMALAQGDDFRNEDIDAQILHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G K
Sbjct: 118 PVLD-------GIVGILPIARGCMSNCSYCITKFATGRVDSPSVQENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP + +++A+V
Sbjct: 171 ELRITGQDTGVYGWDNGDRKLPELLDRICSEI--EGEFRVRVGMANPGGVHGIRQDLADV 228
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+H +Y+F+H PVQSGSD VL M R++ + F+ +V+T E + ++TD I G+P
Sbjct: 229 FAKHDTLYNFIHAPVQSGSDEVLEHMRRQHRVDKFKEIVETFDETLDYWTLSTDFIVGYP 288
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETDED +++ L++E + ++++++F RPGT AA +K + + K+RS+E++
Sbjct: 289 TETDEDHERSMALLREIRPEKINVTRFSKRPGTDAADLKGLGGTIKKERSKEMSEAKMDI 348
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V A+ +G E V + + + D + + Y Q++V + G G A V++
Sbjct: 349 VAAAYEDMVGTEHDV--LVVQDGTGDSVKC--RDEAYRQIIVQNASEHGLEPGNFARVRV 404
Query: 463 TSVGRWSVFGEVIKILNQVD 482
T+ FGE ++ + D
Sbjct: 405 TAHQTVYAFGEPVETRPEPD 424
>gi|352681870|ref|YP_004892394.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
gi|350274669|emb|CCC81314.1| 2-methylthioadenine synthetase [Thermoproteus tenax Kra 1]
Length = 411
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 227/430 (52%), Gaps = 46/430 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAM-DTLIAKCKS--- 116
+Y++T+GC ++D+E +A +L G D E+AD+ L+ T + D I + K
Sbjct: 3 LYVETYGCWLAKADAEIIARRL---GGTRVDRPEDADVVLMYTCAVREDGEIRQLKRIRE 59
Query: 117 -AKKPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
A K L+VAGC+ + +++L + + + +EV + + A
Sbjct: 60 LASKSLIVAGCLAKARPYTIRQLAPSA---------------QLIYPNEVEGGRERTMSA 104
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGV 231
L P + +P+ VGCLG CT+C TK+ RG ++ S + +V V+ +A G
Sbjct: 105 LPEPD---GSVIYTVPLQVGCLGNCTFCVTKYTRGGAGYVKSARPDQVVEHVKRAVAKGA 161
Query: 232 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
+E++L+ +D YG D G NLP LL I+ E+ DG +RIGM+ P + + +
Sbjct: 162 REIYLTGQDVITYGFDARWQRGWNLPDLLERILREV--DGDYRIRIGMSEPWVFGKFVDQ 219
Query: 288 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIATDI 345
I ++++ VY F H+PVQSGSD VL M R YT ++R +V + EL + IATDI
Sbjct: 220 ILDIVKSDERVYRFFHLPVQSGSDRVLRRMGRRYTAQEYRELVLKIKRELNDDVFIATDI 279
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGET+EDF +T+ L++E F +VH++++ RP T A+ M +VP AV K+RS+ +
Sbjct: 280 IVGFPGETEEDFQETLKLMEELVFDKVHVARYSRRPFTEASVMPDQVPDAVKKERSKRAS 339
Query: 405 SV-FE-AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT---SAL 459
S+ E A GR R+ + EI D LVG Y QV+V LG +
Sbjct: 340 SLALELALRRNQRFVGRRIRVLVDEI--DHGLLVGRAHDYRQVVVGRGEGPLGVFEDVMV 397
Query: 460 VKITSVGRWS 469
VK V W+
Sbjct: 398 VKAEPVYLWA 407
>gi|410995108|gb|AFV96573.1| hypothetical protein B649_01295 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 432
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 218/439 (49%), Gaps = 30/439 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTQSAMDT------- 109
++ ++++T GC+ N DSE+M +L+A GY LTD++ AD+ LINT S +
Sbjct: 2 SKKLFIETLGCAMNTRDSEHMIAELNAHEGYELTDDASAADLILINTCSVREKPVHKLFS 61
Query: 110 ---LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ K K A + V GC G +K V+ V G + + ++ +V+ K E
Sbjct: 62 ELGVFNKLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-KAVE 120
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ + + + A R + + + I++GC CT+C RG S + +V
Sbjct: 121 IEIDYDESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEA 178
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP 278
R + G KEV+L ++ YGR + +N LL + A + RI T+P
Sbjct: 179 RKAVDSGAKEVFLLGQNVNNYGRRLSGGNEKINFTELLRRVSA-----VEGLERIRFTSP 233
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + I E R+P + +H+P+QSGS +L AM R YT F L ELVP
Sbjct: 234 HPLHMDDEFIEEFARNPKICKSMHMPLQSGSTEILKAMKRGYTKDWFLNRARKLRELVPN 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
+ I+TDII FPGE+DEDF +T+ ++ + +F Q+ ++ PRP T A +M +V S V +
Sbjct: 294 VSISTDIIVAFPGESDEDFEETMEVLNQVRFEQLFSFKYSPRPLTEAEKMAEVDSEVGSE 353
Query: 399 RSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
R L + + + + G++ ++ E+ G ++ G + + V V + MLGT
Sbjct: 354 RLSRLQARHDEILDEMKLVNLGKIVEVYFEELREGG-YVAGRSDNNLGVKVKGSEEMLGT 412
Query: 457 SALVKITSVGRWSVFGEVI 475
A VKIT V R +GE+I
Sbjct: 413 IASVKITEVSRNVQYGEII 431
>gi|336121828|ref|YP_004576603.1| MiaB-like tRNA modifying protein [Methanothermococcus okinawensis
IH1]
gi|334856349|gb|AEH06825.1| MiaB-like tRNA modifying enzyme [Methanothermococcus okinawensis
IH1]
Length = 428
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 221/439 (50%), Gaps = 39/439 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT-------QSAMDTLIA 112
IY++ +GC+ N +D+ + + F + + N E+AD+ +INT + M + I
Sbjct: 4 IYIEGYGCTLNAADTIIIKNSIVTFKDFQIVQNPEDADVVIINTCAVRLETEHKMISRIK 63
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE-TLKGH-------EV 164
KS K +VVAGC+P+ R+ E G ++ ++ ++V + T H
Sbjct: 64 HFKSLNKKVVVAGCMPKALREKVEDIGDVLIMPKEAHLSGKIVHDYTTYNHCNIGGNNNS 123
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ KL L P N + LPI+ GC+G CTYC K ARG L SY L+ +
Sbjct: 124 NVDIDDKLKYL-TPTNPENSLIMPLPISEGCIGKCTYCIVKVARGRLISYNRNLLIKKAE 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
I GVK + ++S+DT YG D LP L+N I + DG +RIGM + + +
Sbjct: 183 EFINKGVKHILITSQDTACYGFDKNDTLPNLINDIAS---IDGEFDMRIGMMHAKNVTQI 239
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
+ E+ ++ V FLH+P+QSG D VL M R YT+ +F +V+ V + TD
Sbjct: 240 MDELIASYQNDKVSKFLHLPIQSGDDKVLKDMKRGYTVDEFIDIVNEFKRKVKDLNFNTD 299
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS---- 400
+I GFP E +E+F T+ ++K+ +H +++ R T AA++K+V + V KKRS
Sbjct: 300 VIVGFPTEKEENFENTLEVLKKLNPDYIHGAKYTQRRHTEAAKLKQVDTKVRKKRSEILD 359
Query: 401 ---RELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM-LGT 456
REL+ ++ Y+ G+ ++ ITE GI H V+ S N+ +G
Sbjct: 360 KLRRELS--YKNNKNYI---GKTLKVLITE-NNKGI---AHNCKVVK--FNSDKNIKIGE 408
Query: 457 SALVKITSVGRWSVFGEVI 475
+KIT + +FGE++
Sbjct: 409 FRKIKITDAKTFGLFGEIL 427
>gi|448606159|ref|ZP_21658738.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
gi|445739576|gb|ELZ91083.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
sulfurifontis ATCC BAA-897]
Length = 429
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 226/430 (52%), Gaps = 41/430 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFRDIVETFDRELDYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKI 462
V A+ +G E V + + E D + + Y Q++V +T + L ++
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 463 TSVGRWSVFG 472
T +V+
Sbjct: 403 TVTAHQTVYA 412
>gi|11498846|ref|NP_070075.1| hypothetical protein AF1247 [Archaeoglobus fulgidus DSM 4304]
gi|2649334|gb|AAB89997.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
Length = 405
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 199/360 (55%), Gaps = 28/360 (7%)
Query: 94 EEADIWLINTQSAMDTLIAK-------CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ 146
E+A++ +IN+ +D K K K +V+AGC+ + S++ + S +
Sbjct: 15 EDAEVVIINSCGVIDFTERKIIRRMLDLKREGKKVVLAGCLTRISKEALSVAD-SALSPD 73
Query: 147 QIDRVVEVVEETLKGH----EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 202
+D VV+ V L G E R + + + L ++R N + I+ I+ GCLG C++C
Sbjct: 74 NLDMVVDAVYSALNGRKLFTERRFIDKAEFSHLKC-RLRENA-IAIVSISEGCLGKCSFC 131
Query: 203 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 261
TK ARG L S++++++V + G +E+ L+S+DTGAYG D G LP LL I +
Sbjct: 132 ATKFARGRLRSFSMDAIVREAERAVRAGYREIQLTSQDTGAYGMDKGRAMLPELLRKI-S 190
Query: 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 321
E+ +G +R+GM NP + L E+ +Y FLH+PVQSG + +L M R +T
Sbjct: 191 EI--EGEFRVRVGMMNPQHAVRMLDELINAYSSEKIYKFLHIPVQSGDNRILEDMKRNHT 248
Query: 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 381
+ D+ VV+ + I+TDII GFP ET+E F ++ LIKE + V+I+++ R
Sbjct: 249 VEDYVEVVEAFRNSFDDVLISTDIIVGFPTETEEAFWKSYELIKETRPDIVNITRYSARK 308
Query: 382 GTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME------GRVERIWITEIAADGIHL 435
GTPAAR++ +P + K+RSR+LT + +G+E G+ R+ +T+ +G +L
Sbjct: 309 GTPAARLRDIPGWIKKERSRKLTDLMRK----IGLENNKRFVGKKLRVLVTKEGKNGRNL 364
>gi|397906230|ref|ZP_10507046.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
gi|397160689|emb|CCJ34381.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Caloramator australicus RC3]
Length = 433
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/422 (32%), Positives = 217/422 (51%), Gaps = 36/422 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTLIAKCK 115
T GC N ++E MA GY + D + AD+++INT +S AK K
Sbjct: 8 TLGCRVNTYETEAMAETFIKNGYEVVDFDDYADVYVINTCTVTNIGDKKSRQMIRRAKKK 67
Query: 116 SAKKPLVVAGCVPQ-GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKG-----HEVRLLH 168
+ +V GC Q +++++E V I VG + ++VE V+E LK H ++
Sbjct: 68 NNDAVVVAVGCYVQVAPEEVEKIEDVDIIVGTKDKGKIVEFVDEYLKNRKRIKHVENVMS 127
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
+ L++ + + +K L I GC C+YC +ARG + S E+++ V +
Sbjct: 128 IRHFEELEIDEYQ-DKTRAFLKIQDGCDRFCSYCLIPYARGPVRSRKPENILMEVEKLSR 186
Query: 229 DGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----ILE 283
+G KEV LS +YG+D+ VNL ++ I +G +RIG +P F I+E
Sbjct: 187 NGYKEVILSGIHVASYGKDLKDVNLIDVIEMIS---KVEGIERIRIGSVDPTFFNEEIIE 243
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
LK I + H H+ +QSG D L MNR YT S+++ +VD L E+ + I T
Sbjct: 244 KLKYIDKFCHH------FHLSLQSGCDETLRRMNRHYTTSEYKKIVDNLREVFEDVSITT 297
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
D+I GFPGETDE+F +T +KE K ++HI ++ PR GT AA K +VP ++ ++RS++
Sbjct: 298 DVIVGFPGETDEEFERTFEFLKEIKLSKMHIFKYSPRKGTKAAEYKNQVPESIKEERSKK 357
Query: 403 LTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L + + EG+V + E +G + G+TK Y++V V S ++ G V
Sbjct: 358 LIELDKILEHEFIKKHEGKVMDVLFEE-YKEGYNW-GYTKNYIRVGVESQRDLSGEIINV 415
Query: 461 KI 462
KI
Sbjct: 416 KI 417
>gi|219853312|ref|YP_002467744.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
gi|219547571|gb|ACL18021.1| MiaB-like tRNA modifying enzyme [Methanosphaerula palustris E1-9c]
Length = 420
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 183/347 (52%), Gaps = 32/347 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-----TLIAKCK 115
+Y++ +GC+ N +D+ + L A G + EEAD ++NT + + L +
Sbjct: 26 VYLEEYGCTFNHADTLALVEVLKAQGCTIVPTPEEADAVVLNTCTVIGPTERLMLRQMRR 85
Query: 116 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKLPA 174
+ L + GC+P Q+D + EV + + E+R A
Sbjct: 86 YSGHDLYLTGCMP----------------AVQMDAICEVCSPKVIPPEEIR-------AA 122
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 234
L + ++ + GC G C+YC T++ARG L S+ + RV+ + +G EV
Sbjct: 123 YTLVNTTVPSAIGVVQVGQGCAGRCSYCITRNARGPLQSFQPPDIYNRVQQAVDNGAVEV 182
Query: 235 WLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 294
L+ +D ++G D+G +LP LL I A P G LR+GM NP +L L ++ +
Sbjct: 183 QLTGQDLSSWGLDLGRSLPDLLRGITA-FP--GDYRLRLGMMNPATVLPILDDLIAAYQS 239
Query: 295 PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD 354
++ FLH+P+QSGSD VL+AMNR YT SD + ++ E+ P + + TD+I GFPGETD
Sbjct: 240 DRIFQFLHLPIQSGSDRVLAAMNRSYTASDVQQILRAFREVHPDLTLMTDLIVGFPGETD 299
Query: 355 EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
+DF +T+ +I +V+++++ RPGTPAA + + +V K RSR
Sbjct: 300 QDFEETLQMITALSPNKVNMTRYSGRPGTPAADLPDLQDSVKKDRSR 346
>gi|325831353|ref|ZP_08164607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
gi|325486607|gb|EGC89055.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Eggerthella sp. HGA1]
Length = 459
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 144/454 (31%), Positives = 217/454 (47%), Gaps = 50/454 (11%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAMDT------- 109
T ++TFGC N+ DSE +AG L G D E+ADI T + A DT
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADIVAFMTCCVREAADTRLYGQVA 68
Query: 110 ------LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
L A +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 161 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
GH+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDDVPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M P V++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364
Query: 398 KRSRELTSV-----FEAFTPYLG------MEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
+R L + FEA LG +EG +R D L G + V
Sbjct: 365 QRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKR--------DERLLAGKSPKNQTVH 416
Query: 447 VPSTG-----NMLGTSALVKITSVGRWSVFGEVI 475
P+ ++ G++ V++ W + GE++
Sbjct: 417 APAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450
>gi|448546026|ref|ZP_21626353.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|448548100|ref|ZP_21627444.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|448557123|ref|ZP_21632558.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
gi|445703372|gb|ELZ55303.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-646]
gi|445714802|gb|ELZ66560.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-645]
gi|445714992|gb|ELZ66749.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp. ATCC
BAA-644]
Length = 429
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 225/430 (52%), Gaps = 41/430 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGC--VPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ L++ GC + QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKI 462
V A+ +G E V + + E D + + Y Q++V +T + L ++
Sbjct: 347 DIVAAAYDEMVGTEREV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 463 TSVGRWSVFG 472
T +V+
Sbjct: 403 TVTAHQTVYA 412
>gi|405983202|ref|ZP_11041512.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
gi|404389210|gb|EJZ84287.1| MiaB/RimO family radical SAM methylthiotransferase [Slackia
piriformis YIT 12062]
Length = 451
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/452 (30%), Positives = 226/452 (50%), Gaps = 42/452 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC 114
+T + T+GC N+ DSE +AG L + G + E+A+I + T ++A L+ +
Sbjct: 7 KTFCLYTYGCQMNEHDSERIAGMLESHGAVQVSSVEQAEIAIFVTCCIREAADVRLMGQV 66
Query: 115 KS------------AKKPLVVAGCVPQGSRDLKELEGV-----SIVGVQQIDRVVEVVEE 157
S +K+ + + GC+ G RD ++L + G Q I+ +V ++E
Sbjct: 67 ASIKNIPLPQGSELSKRIVCIGGCI--GQRDAEKLPEALPHVDVVFGTQNIEHLVSLIEA 124
Query: 158 TL--KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
+ GH+V +L + +LP R + + LP+ VGC CTYC + RG S T
Sbjct: 125 AIIQGGHQVEVLDSSTSFSTELPSKRVHPWSAWLPVTVGCNNFCTYCIVPYVRGRERSRT 184
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI--VAELPPDGSTMLRI 273
+E +V R ++ADGVKE+ L ++ +YGRD+ P + + VAE G LR
Sbjct: 185 LEDVVEEARGLVADGVKEITLLGQNVNSYGRDL-YGEPRFADVLRGVAET---GVERLRF 240
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P + + E+ L + + LH+PVQSGSDA+L AMNR YT + +++ +
Sbjct: 241 ATSHPKDLTREVIELYGSLGN--LMPSLHLPVQSGSDAILKAMNRRYTAEHYLGLIEEVR 298
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 392
++ P + +TDII GFPGET+EDF T +L++ + QV + R GTPAA M+ P
Sbjct: 299 KVNPDISFSTDIIVGFPGETEEDFQATYDLVERVGYSQVFTFIYSRREGTPAASMQDDTP 358
Query: 393 SAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVP- 448
V+++R L + + AF GR + + + D L GH+ + V P
Sbjct: 359 HEVIQRRFDSLVDLVQENAFAQNQRFVGRTVDVLVEGASKRDERVLAGHSPHNITVHAPL 418
Query: 449 ----STGNMLGTSALVKITSVGRWSVFGEVIK 476
+++GT V+I W + G +++
Sbjct: 419 PEGVRIDDIVGTVVPVRIDEAKAWYLSGAMLR 450
>gi|342218658|ref|ZP_08711266.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
gi|341589354|gb|EGS32635.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
135-E]
Length = 443
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 136/446 (30%), Positives = 219/446 (49%), Gaps = 34/446 (7%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC 114
+ G + Y+ T+GC N SDSE AGQL A GY +T++ + AD+ L+NT +T K
Sbjct: 3 VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYHMTEDMDMADVILLNTCCVRETAEGKT 62
Query: 115 ------------KSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 159
++ K + + GC+ Q +D + V +V G I ++ E+++
Sbjct: 63 LGKIGELKHYKERNPKLVIAITGCMAQEWQDRLFERAPHVDLVIGTHNIHKLTELLQVRQ 122
Query: 160 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
H L LPA DLP R +KF +PI GC CTYC H RG S ++
Sbjct: 123 GKHA--LAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKYCTYCIVPHVRGREVSRPLQD 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 276
+V V+ + G KE+ L ++ +YG D+ G + L++A+ G +R +
Sbjct: 181 IVAEVKALGRAGYKEITLLGQNVNSYGLDLKDGTDFSSLVDALE---DAKGVERIRYMTS 237
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + + K I + R V LH+PVQSGS+A L MNR YT+ + +VD E +
Sbjct: 238 HPKDMTK--KMIDAIARSTRVVHHLHLPVQSGSNATLKRMNRGYTVEHYLELVDYAREKM 295
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
P + + TD+I GFPGET+E F +T+ LI+ + + + PR GTPAA K ++P
Sbjct: 296 PDLVLTTDMIVGFPGETEEMFQETLALIQRVGYDMAYTFIYSPRTGTPAATWKDQIPQEE 355
Query: 396 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA-----DGIHLVGHTKGYVQVLVPST 450
KR + L + F+ L + ++E+ + I D H G T G ++ +
Sbjct: 356 KSKRLKRLMDIQNEFS--LALNKKMEQCVYSVIVEGPTKNDEHHWFGRTGGNKMIIWEND 413
Query: 451 GNM-LGTSALVKITSVGRWSVFGEVI 475
G++ +G + V + W + G ++
Sbjct: 414 GSVSIGDTVSVAVDKGQTWVLKGHIV 439
>gi|410458684|ref|ZP_11312441.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
gi|409931034|gb|EKN68022.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
azotoformans LMG 9581]
Length = 515
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 223/442 (50%), Gaps = 32/442 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL---------- 110
Y++T+GC N+ D+E MAG L+ G+ TD++EEADI L+NT + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILTEMGFENTDSTEEADIILLNTCAVRENAENKVFGEIGH 130
Query: 111 IAKCKSAKKPLV--VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L+ V GC+ Q +R L++ + V ++ G I R+ ++++E + G E
Sbjct: 131 LKQLKREKPDLILGVCGCMSQEEGVVNRLLQKHQQVDLIFGTHNIHRLPQLLKEAMFGKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPK+R K + I GC CTYC + RG S E ++
Sbjct: 191 RVVEVWSKEGDVIENLPKIRNGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIID 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRDLARQGYKEITLLGQNVNAYGKDFE-DMKYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M+R+YT + +V + E +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMDHIHLPVQSGSTEMLKIMSRKYTREQYLELVRKIKEAIPNVSL 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TD+I GFP ETDE F T++L +E ++ + + PR GTPAA M VP V K+R
Sbjct: 368 TTDLIVGFPNETDEQFEDTLSLYREVEYDSAYTFIYSPREGTPAADMVDNVPMEVKKERL 427
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNML 454
+ L ++ + + + + I E+ +G L G+T+ V + +
Sbjct: 428 QRLNALVNEIS---AKKNKQYQDKIVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAI 484
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G VKIT WS+ GE+++
Sbjct: 485 GQIVKVKITDAKTWSLNGEMVE 506
>gi|313125740|ref|YP_004036010.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|448285580|ref|ZP_21476821.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|312292105|gb|ADQ66565.1| MiaB-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
gi|445576216|gb|ELY30673.1| miab-like tRNA modifying enzyme [Halogeometricum borinquense DSM
11551]
Length = 417
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/434 (31%), Positives = 228/434 (52%), Gaps = 41/434 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + L G+ + EEAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVEEPEEADVAIMNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + + DL I G + + E EE + + ++LH +P+ +
Sbjct: 59 RRAKELEEETADL------IITGCMALAQGEEFHEEDV---DAQILHWDDVPSAVTNGEC 109
Query: 178 P------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + + V ILPI GC+ C+YC TK A G + S VE V + R ++ G
Sbjct: 110 PTPGPGTEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPPVEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I +E+ +G +R+GM NP I +E+ E
Sbjct: 170 KEIRITGQDTGVYGWDKGDRKLPELLDRICSEI--EGDFRVRLGMANPGGIHGIHEELVE 227
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V RH +Y+F+H+PVQSGSD VL AM R++ + F +V+T E + ++TD I GF
Sbjct: 228 VFDRHDKLYNFIHLPVQSGSDTVLEAMRRQHRVDKFVEIVETFDETLDYWTLSTDFIVGF 287
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P ET+ D Q++ L +E + +V++++F RPGT AA MK + V K+RS+E++
Sbjct: 288 PTETEADHEQSMALFREVRPEKVNVTRFSKRPGTDAADMKGLGGTVKKERSKEMSELKMD 347
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V EA+ +G RV + + E D + + Y Q++V + G G V+
Sbjct: 348 IVAEAYESMIGETHRV--MVVREGTGDSVKC--RDEAYRQIIVQNASEHGIEPGDFLDVE 403
Query: 462 ITSVGRWSVFGEVI 475
+TS FG+ +
Sbjct: 404 VTSHQTVYAFGKPV 417
>gi|448565475|ref|ZP_21636342.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
gi|445715219|gb|ELZ66975.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
prahovense DSM 18310]
Length = 429
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 139/436 (31%), Positives = 227/436 (52%), Gaps = 43/436 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGC--VPQGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
S L++ GC + QG+ D +E EG+ I+ + V E G V
Sbjct: 65 ESETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
V H +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 GVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELAYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALV 460
V A+ +G E V + + E D + + Y Q++V + G G A V
Sbjct: 347 DIVAAAYDEMVGTEREV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 461 KITSVGRWSVFGEVIK 476
K+T+ F E ++
Sbjct: 403 KVTAHQTVYAFAEPVE 418
>gi|268325056|emb|CBH38644.1| conserved hypothetical protein, UPF0004 family, radical SAM
superfamily, TRAM family [uncultured archaeon]
Length = 430
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/386 (30%), Positives = 198/386 (51%), Gaps = 35/386 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----QSAMDTL- 110
GT ++++TFGC+ N D+ M L G+ + + SE ADI ++NT ++ ++ +
Sbjct: 9 GTAKVFIETFGCTANTGDTMEMRAILRNAGHEIVEESE-ADIVIVNTCTVTKRTELNVIK 67
Query: 111 -IAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ + K K +VVAGC+ +L ++ G +V ++
Sbjct: 68 RLNELKERGKAVVVAGCMAAAQPELVR---------------------SILGDDVAMVTP 106
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ + A + ++ + + ++ I GC+G CTYC K ARG L SY E + V++ +
Sbjct: 107 RDIQAREKQRLEFDGVIAVITIAQGCIGKCTYCIVKQARGKLKSYKPEKICEAVKSAVES 166
Query: 230 GVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
G E+ ++S+D+ AYG + LP LL I + +G +R+GM NP ++ L E+
Sbjct: 167 GANEIRITSQDSSAYGWGSTDIKLPALLEQITS---VEGDFRIRVGMMNPFTLMPILDEL 223
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
E ++ F HVPVQSGSD VL M R Y ++DF +V + I+TD I G
Sbjct: 224 LEAFNTEKIFKFFHVPVQSGSDRVLREMRRNYKVADFVEIVTNIRARFRQSTISTDFIIG 283
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ET+EDF ++ L++E K +V+I++F PRP T A+++ + K+RSR ++ +
Sbjct: 284 FPTETEEDFFASLYLLEEIKPEKVNITRFSPRPRTEASKLTDLLEREKKRRSRIFSTGYH 343
Query: 409 --AFTPYLGMEGRVERIWITEIAADG 432
F +EG + +TE G
Sbjct: 344 NIVFAKNKELEGAELPVLVTEPGKKG 369
>gi|374629251|ref|ZP_09701636.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
gi|373907364|gb|EHQ35468.1| MiaB-like tRNA modifying enzyme [Methanoplanus limicola DSM 2279]
Length = 403
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 192/349 (55%), Gaps = 30/349 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----QSAMDTLIAKCK 115
++ +T+GC+ N +D+ + + G + ++EAD +INT Q+ + A
Sbjct: 9 VHFETYGCTFNYADTGKLMDIALSQGCKVVP-ADEADTVVINTCTVVAQTERAMIRAVQD 67
Query: 116 SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL 175
+ + +VV GC+P +L + V+ R++ + E + H R+ H +
Sbjct: 68 YSDRDVVVTGCMPVVQAEL-------LRSVRPDIRII--LPEEIYRHSERIGHSVE---- 114
Query: 176 DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVW 235
V ++ + GCLG+C+YC T+ ARG L S V +V +I++GV E+
Sbjct: 115 --------GGVGVVQMGTGCLGSCSYCITRFARGELHSNPVADIVSETERLISEGVHEIQ 166
Query: 236 LSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 295
L+ +D AYG D G NL LL A+ AE+ +G +R GM NP +L +L EI +
Sbjct: 167 LTGQDVSAYGYDNGENLGTLLKAM-AEV--EGEFEIRAGMMNPKTVLPYLDEIIDGFLSD 223
Query: 296 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDE 355
++ F+H+PVQSGSD VLS M R YT +DF +V + VP ++++TD+I GFP E++E
Sbjct: 224 KIFKFIHIPVQSGSDRVLSDMGRGYTSADFERIVTEFRKKVPDIRVSTDLIVGFPTESEE 283
Query: 356 DFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
DF +T+ ++K +V+I++F R TPAA K +P + K+RSR LT
Sbjct: 284 DFKETLEMVKRVCPTKVNITRFSVRENTPAAEYKDMPDWIKKERSRALT 332
>gi|403384177|ref|ZP_10926234.1| hypothetical protein KJC30_05724 [Kurthia sp. JC30]
Length = 447
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/444 (31%), Positives = 224/444 (50%), Gaps = 31/444 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA--- 117
+ T GC N ++E + GY TD ++D+++INT + ++ K +
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKEAGYERTDFDHQSDVYVINTCTVTNSGDKKSRQVIRR 63
Query: 118 ---KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVE----ETLKGHEVR 165
K P + V GC Q S ++ + GV IV G Q +++ ++E E + VR
Sbjct: 64 AVRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRQKLLGLIEDYKVERQPINAVR 123
Query: 166 -LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ + LD+P ++ L I GC CT+C ARG + S E +V + +
Sbjct: 124 NIMKNRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEQVVKQAQ 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G KE+ L+ TG YG+D+ NL +LL A+ E G LRI I +
Sbjct: 183 QLVDAGYKEIVLTGIHTGGYGQDLKDYNLAMLLRAL--ETKVKGLKRLRISSIEASQITD 240
Query: 284 HLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E+ +VLR+ + + LH+P+QSGSD VL M R+YT+ F + L E++P + I
Sbjct: 241 ---EVLDVLRNSKIIVNHLHIPIQSGSDTVLKRMRRKYTMEFFGQRLTQLKEVLPDLAIT 297
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
+D+I GFPGET+E+F +T N I++Y+F ++H+ F R GTPAARM+ +V V +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIRDYEFAELHVFPFSKRTGTPAARMEDQVDEDVKNERVH 357
Query: 402 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGI----HLVGHTKGYVQVLVPSTGNMLG 455
L S+ + E V + EI G L+GHT Y++V T +M+G
Sbjct: 358 RLLSLNDQLAKQYASRFENEVLEVIPEEIVKAGEPNEGMLLGHTANYMKVAFEGTPDMIG 417
Query: 456 TSALVKITSVGRWSVFGEVIKILN 479
VK+T G G+ +++++
Sbjct: 418 QIVKVKVTQAGYPVSTGQFVRVMD 441
>gi|423395390|ref|ZP_17372591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|423406265|ref|ZP_17383414.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
gi|401654801|gb|EJS72340.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-1]
gi|401660259|gb|EJS77741.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-3]
Length = 450
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|333980035|ref|YP_004517980.1| MiaB family RNA modification protein [Desulfotomaculum kuznetsovii
DSM 6115]
gi|333823516|gb|AEG16179.1| RNA modification enzyme, MiaB family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 445
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 145/442 (32%), Positives = 216/442 (48%), Gaps = 35/442 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTL 110
T+ + T GC NQ +S +A GY + D SE ADI++INT +S
Sbjct: 13 TVAVTTLGCKVNQYESAALATLFRERGYKVVDFSEAADIYVINTCTVTHLGDRKSRQLIR 72
Query: 111 IAKCKSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL- 167
A + +VV GC Q S ++ + GV +VG + R+V++VEE E L
Sbjct: 73 RATRNNPHARVVVTGCYAQTSPEEVLSIPGVDLVVGTRDKSRIVDLVEELESRKEGPLAV 132
Query: 168 --------HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
++LP LP ++ L I GC C YC +ARG L S E++
Sbjct: 133 VRDVFADQDYEELPVPALP----SRVRAFLKIQEGCNNFCAYCIIPYARGPLRSRDPENV 188
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTN 277
+ R ++A G KE+ L+ TGAYG+D G +L L+ + AE+P G LR+
Sbjct: 189 LAEARRLVAGGFKELVLTGIHTGAYGQDRPGGPDLAGLVECL-AEIP--GLVRLRLSSVE 245
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P I L +I P V LH+P+QSG D VL+ M R YT + FR +V + VP
Sbjct: 246 PMDITGKLVDIMAT--RPNVCRHLHIPLQSGDDTVLARMRRHYTTAWFRELVQRVRGCVP 303
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
G+ I TDII GFPGETD F T N ++E F ++H+ ++ PR GT AA SA VK
Sbjct: 304 GIAITTDIIVGFPGETDGQFENTFNFVREMAFARLHVFKYSPRQGTEAASFPDQISAPVK 363
Query: 398 K-RSRELTSVFEAFTPYLGME--GRVERIWI-TEIAADGIHLVGHTKGYVQVLVPSTGNM 453
+ RSR + ++ + + GR ++ + E+ G T Y++V+ P+ N
Sbjct: 364 EARSRRMIALGDELARSFAAKHIGREVQVLVEEELPEKAGFFAGLTDNYLRVIFPARKNP 423
Query: 454 LGTSALVKITSVGRWSVFGEVI 475
+G V++ + + G +I
Sbjct: 424 VGELVTVRVEEIEGADLKGMII 445
>gi|13542169|ref|NP_111857.1| 2-methylthioadenine synthetase [Thermoplasma volcanium GSS1]
gi|14325601|dbj|BAB60504.1| hypothetical protein [Thermoplasma volcanium GSS1]
Length = 401
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 212/424 (50%), Gaps = 35/424 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
IY + +GC+ NQ ++ +L G L N +EAD+ +I T + D ++A+ ++
Sbjct: 3 IYFEAYGCTLNQGETALYVNKLLNEGNTLVSNPKEADLSIIGTCAVIKKTEDHMMARIQN 62
Query: 117 AKK--PLVVAGCV-PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ + V GC+ P + + E + VS++ + EV++E +
Sbjct: 63 LSRFGKVEVIGCLAPVKGKTMVE-DNVSVIEKDRFRSFQEVIDEVSPVNA---------- 111
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
+ V +PIN GC G C +C + ARG L S E + G+++ ++ G+KE
Sbjct: 112 ----------EIVSGIPINQGCTGKCNFCVSHIARGKLVSRKPEKIAGQIKILLQRGIKE 161
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+ ++S DT AYG+DIG+ LP L+ I E+ D LR+GM P LE + ++ R
Sbjct: 162 IKITSLDTAAYGKDIGLRLPHLIRTI-TEIGDDFR--LRVGMMEPKNTLEIVDDLISAYR 218
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
V+ FLH+PVQSG D VL MNREYT+SDF + E P ++TD+I G+ E
Sbjct: 219 SEKVFKFLHLPVQSGDDYVLEVMNREYTVSDFIRITGKFREAFPDSTLSTDLIIGYYAEN 278
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF--T 411
D+ F +TV LI++ + +++++F PR T + P+ ++K++ R + + +
Sbjct: 279 DDSFEKTVQLIEKIRPEIINVTKFSPRELTADFEKRPKPTNILKEQDRMIADMHKEILQE 338
Query: 412 PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVF 471
+ + G+ E + ITE G ++G Y +++ V+IT S+
Sbjct: 339 KFSNLIGKTEFVLITE-NGKGRSMIGRDHAYRPIVIMDKTRKFEFHQ-VEITGFENTSLI 396
Query: 472 GEVI 475
G +I
Sbjct: 397 GRII 400
>gi|167630503|ref|YP_001681002.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
gi|167593243|gb|ABZ84991.1| miab-like tRNA modifying enzyme [Heliobacterium modesticaldum Ice1]
Length = 446
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 207/413 (50%), Gaps = 34/413 (8%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK 115
PG T T GC NQ +++ +AG A GYA+ AD++++NT + K +
Sbjct: 3 PGEPTAAFHTLGCKVNQGETDAIAGMFKARGYAIVPFDAPADVYVVNTCTVTHLSDRKSR 62
Query: 116 SAKKP---------LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
A + +VV GC Q + D ++ +EGV IV G + +V++VEE + E
Sbjct: 63 QAIRKANRQNPDAVVVVTGCYAQTAADEVQAIEGVDIVVGTDRRSAIVDLVEEHRRSGET 122
Query: 165 --------RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R+ ++LPA R++ + I GC CTYC +ARG + S +
Sbjct: 123 VNTVYDSCRIERFEELPAAP----ERSRARATIKIQDGCDLYCTYCIIPYARGPVRSRRI 178
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
ES+V + +G KE+ LS GAYG D +L L+ + +P G +R+G
Sbjct: 179 ESVVEEATRLTGEGFKEIVLSGIHLGAYGSDFNADLAKLIVEL-CRIP--GLRRIRVGSV 235
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P E E+ E + HP V H+P+QSGSDAVL M R Y DF V + +++
Sbjct: 236 EP---QEFTPELLEAVVHPRVCPHFHIPLQSGSDAVLERMGRRYRRQDFLDVTRKIQQMI 292
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
PG+ I +D+I GFPGE + D+ + L + +H+ + PR GTPAA ++PSAV
Sbjct: 293 PGVAITSDVIVGFPGEREADYLLSEELCRATGLAGLHVFPYSPRRGTPAATFPDQIPSAV 352
Query: 396 VKKRSRELTSVF-EAFTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
++R++ L + E + Y G G++ + + E DG+ GHT Y++V
Sbjct: 353 KQERAQRLAKLARELASDYAKGFVGQIREV-LAEEQVDGV-WTGHTDNYLKVF 403
>gi|159904885|ref|YP_001548547.1| MiaB-like tRNA modifying protein [Methanococcus maripaludis C6]
gi|159886378|gb|ABX01315.1| MiaB-like tRNA modifying enzyme [Methanococcus maripaludis C6]
Length = 425
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/361 (33%), Positives = 194/361 (53%), Gaps = 18/361 (4%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT-------QSAMDTLIA 112
IY++ +GC+ N +D+E + ++ F + LTDN +++DI +INT + M + I
Sbjct: 3 IYIEGYGCTLNTADTEIIKNSVNEFEDFELTDNVDDSDIIVINTCIVRQETEHRMISRIE 62
Query: 113 KCKSAKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKG-HEVRLLHRK 170
KS K +VVAGC+ + + +K L V I+ + + + LKG E +
Sbjct: 63 YFKSLDKKVVVAGCMAKALPKKIKNLADVLIMPREAQYSGIILKNNLLKGCSEKNGKSNE 122
Query: 171 KLPALD-----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
L D + KV + LPI GCLG+CTYC K ARG+L SY + + +
Sbjct: 123 NLNFEDQLNEKIKKVSSQGLITALPICEGCLGSCTYCIVKRARGNLVSYDRDLIFKKAEE 182
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
++ G K + ++++DT YG D +LP L+N I +E+P + +RIGM + F L
Sbjct: 183 LVKTGTKCLLVTAQDTACYGLDNNDSLPNLINDI-SEIPEKFA--MRIGMMHAKFAEPLL 239
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
E+ E + V FLH+P+QSG D VL MNR Y++ +F +V++ + + TD+
Sbjct: 240 DELIESFKSEKVVKFLHLPIQSGDDQVLKDMNRNYSVDEFISVLNEFKLKIKNLNFTTDV 299
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS 405
I GFP ET+E F T+ ++K+ K H +++ R T AA +K+V + + K+RS L
Sbjct: 300 IVGFPTETEEAFQNTLEIVKKIKPDFTHAAKYSQRKYTKAAVLKQVDTKIRKERSEILNE 359
Query: 406 V 406
+
Sbjct: 360 L 360
>gi|423612521|ref|ZP_17588382.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
gi|401246110|gb|EJR52462.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD107]
Length = 450
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 222/443 (50%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + G EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|261419508|ref|YP_003253190.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. Y412MC61]
gi|319766323|ref|YP_004131824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
gi|261375965|gb|ACX78708.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC61]
gi|317111189|gb|ADU93681.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. Y412MC52]
Length = 531
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 218/439 (49%), Gaps = 28/439 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NT ++A + + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL-G 140
Query: 117 AKKPLV---------VAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
KPL V GC+ Q + LK+ + V ++ G I R+ ++ E
Sbjct: 141 YLKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSK 200
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 201 EMVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDII 260
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 261 QEVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYSLGDLMDELRKIDIARIRFTTSHPRD 319
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P +
Sbjct: 320 FDDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVA 377
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 378 LTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKER 437
Query: 400 SRELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
+ L + + A EG+V + + E + L G+T+ V +++G
Sbjct: 438 LKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQ 497
Query: 457 SALVKITSVGRWSVFGEVI 475
V+IT W++ GE++
Sbjct: 498 LVNVRITQAKTWTLTGELV 516
>gi|365154971|ref|ZP_09351367.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
gi|363628896|gb|EHL79597.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
smithii 7_3_47FAA]
Length = 514
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 220/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG L GY TD E+A++ L+NT ++A + + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGILMQLGYEPTDQPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 117 AK-----KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K KP L V GC+ Q ++ LK+ + V +V G I R+ ++ E E
Sbjct: 131 LKPLKMEKPDLLLGVCGCMSQEESVVNKLLKQYQYVDMVFGTHNIHRLPHILNEAYMAKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVVENLPKVRQGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDMEYGLGDLMDDLRKIDIPRIRFTTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + + +P + +
Sbjct: 310 DDHLIEV--LAKKGNLMEHIHLPVQSGSSEILKIMARKYTREQYLELVRKIKKAIPDVAL 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ET+E F +T++L++E F + + PR GTPAA+MK VP V K+R
Sbjct: 368 TTDIIVGFPNETEEQFEETLSLVREVGFESAYTFIYSPREGTPAAKMKDNVPMEVKKERL 427
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + EG++ + + E + L G+T+ V + +G
Sbjct: 428 QRLNELVNELSAKAMKKYEGKIVEVLVEGESKNNPDVLAGYTRRNKLVNFKGPKSAIGQI 487
Query: 458 ALVKITSVGRWSVFGEVI 475
VKIT W++ GE++
Sbjct: 488 VKVKITEAKTWTLNGEMV 505
>gi|42783437|ref|NP_980684.1| hypothetical protein BCE_4391 [Bacillus cereus ATCC 10987]
gi|206978420|ref|ZP_03239289.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217961800|ref|YP_002340370.1| MiaB family RNA modification protein [Bacillus cereus AH187]
gi|222097755|ref|YP_002531812.1| fe-s oxidoreductase [Bacillus cereus Q1]
gi|229141048|ref|ZP_04269590.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|229198438|ref|ZP_04325142.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|375286316|ref|YP_005106755.1| hypothetical protein BCN_4222 [Bacillus cereus NC7401]
gi|384182130|ref|YP_005567892.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402555555|ref|YP_006596826.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
gi|423354803|ref|ZP_17332428.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|423373811|ref|ZP_17351150.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|423570550|ref|ZP_17546795.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|423574010|ref|ZP_17550129.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|423604040|ref|ZP_17579933.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|42739366|gb|AAS43292.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
gi|206743376|gb|EDZ54814.1| RNA modification enzyme, MiaB family [Bacillus cereus H3081.97]
gi|217065337|gb|ACJ79587.1| RNA modification enzyme, MiaB family [Bacillus cereus AH187]
gi|221241813|gb|ACM14523.1| Fe-S oxidoreductase [Bacillus cereus Q1]
gi|228584941|gb|EEK43055.1| hypothetical protein bcere0001_39660 [Bacillus cereus m1293]
gi|228642326|gb|EEK98615.1| hypothetical protein bcere0013_41420 [Bacillus cereus BDRD-ST26]
gi|324328214|gb|ADY23474.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358354843|dbj|BAL20015.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401085807|gb|EJP94041.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
IS075]
gi|401095212|gb|EJQ03272.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
AND1407]
gi|401203746|gb|EJR10581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A12]
gi|401212579|gb|EJR19322.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-D12]
gi|401245726|gb|EJR52079.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD102]
gi|401796765|gb|AFQ10624.1| Fe-S oxidoreductase [Bacillus cereus FRI-35]
Length = 450
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 222/443 (50%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|206969427|ref|ZP_03230381.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|229180587|ref|ZP_04307929.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|229192521|ref|ZP_04319483.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|365158901|ref|ZP_09355090.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|423411893|ref|ZP_17389013.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|423432321|ref|ZP_17409325.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
gi|206735115|gb|EDZ52283.1| RNA modification enzyme, MiaB family [Bacillus cereus AH1134]
gi|228590945|gb|EEK48802.1| hypothetical protein bcere0002_41730 [Bacillus cereus ATCC 10876]
gi|228603011|gb|EEK60490.1| hypothetical protein bcere0005_39320 [Bacillus cereus 172560W]
gi|363626189|gb|EHL77190.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus sp.
7_6_55CFAA_CT2]
gi|401103961|gb|EJQ11938.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3O-2]
gi|401117077|gb|EJQ24915.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4O-1]
Length = 450
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|390938904|ref|YP_006402642.1| MiaB family RNA modification protein [Desulfurococcus fermentans
DSM 16532]
gi|390192011|gb|AFL67067.1| RNA modification enzyme, MiaB family [Desulfurococcus fermentans
DSM 16532]
Length = 432
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 199/374 (53%), Gaps = 43/374 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDTLIAKCKSAK- 118
+Y++T+GC+ N+SD M + G+ L ++ E+AD ++INT +DT K +
Sbjct: 3 VYIETYGCALNKSDEALMVESILREGHVLVNSIEDADTFIINTCIVRLDTEYHMVKRIRE 62
Query: 119 ---------KPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
K L+VAGC+ + LK S+V Q + EV++
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112
Query: 168 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
R K+ +D + R + + +PI GCL C++C TKHAR L S++++++V
Sbjct: 113 -RGKIVLIDGLRERDRIGIHVEDRIAPIPIQEGCLSDCSFCITKHARRILVSHSIDAVVK 171
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMVRIGMINP- 228
Query: 280 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
EHL+ I + L VY FLH+P+QSGS+ VLS M R Y++ ++ +V+ +
Sbjct: 229 ---EHLRHILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEVKS 285
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
+PG+ IATDII G P E +EDF++T+ +I+E +F +VH++ + RP T +A + +VP+
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFSETLKVIRELEFERVHLAGYSIRPLTYSASLPQVPTR 345
Query: 395 VVKKRSRELTSVFE 408
V K+R V E
Sbjct: 346 VKKERVLRALQVIE 359
>gi|448689439|ref|ZP_21695023.1| MiaB-like tRNA modifying enzyme [Haloarcula japonica DSM 6131]
gi|445777710|gb|EMA28670.1| MiaB-like tRNA modifying enzyme [Haloarcula japonica DSM 6131]
Length = 427
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 222/444 (50%), Gaps = 56/444 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +++ + L G+ D E AD+ ++NT + ++ ++A+ K
Sbjct: 5 HIETYGCTSNRGETQQIEQALREGGHHPADGPESADVAILNTCTVLEKTERNMLARAKEL 64
Query: 118 KKP----LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
K LV+ GC + QG +E + I + +LH
Sbjct: 65 DKETPADLVITGCMALAQG----EEFQTADI--------------------DAEVLHWDD 100
Query: 172 LPALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+P L P N V ILPI GC+ C+YC TK A G + S +V+ V
Sbjct: 101 VPQYVLNGECPTITPDTETVLNGVVGILPIARGCMSDCSYCITKQATGKIESPSVDENVE 160
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN---LPILLNAIVAELPPDGSTMLRIGMTNP 278
+ R ++ G KE+ ++ +DTG YG D LP LL+ I ++ DG +R+GM NP
Sbjct: 161 KARALVHAGAKEIRITGQDTGVYGWDTNQGTSLLPELLDRICTDI--DGDFRVRVGMANP 218
Query: 279 PFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ +E+A V H +Y+F+H PVQSGSD VL+ M R++ +S++ V++TL + +
Sbjct: 219 KGLHGVREELAAVFAEHDELYNFIHAPVQSGSDDVLADMRRQHAVSEYLEVIETLDDHLD 278
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
++TD I GFP E D +++ L++E + ++++++F RPGT A MK + + K
Sbjct: 279 YWTLSTDFIVGFPTEEPTDHEESMALLRETRPEKINVTRFSKRPGTDADDMKGLGGQIKK 338
Query: 398 KRSRELTSVFEAF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GN 452
RS+E++ Y M G + + E D LVG+ + Y QV++ G
Sbjct: 339 DRSKEMSEAKMELMAEAYEEMVGHTSSVLLVEDGTDE-SLVGYDEAYRQVVIADAQERGL 397
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G + V+ITS FGE ++
Sbjct: 398 EIGDTVDVEITSHNTVYAFGEPVE 421
>gi|56419838|ref|YP_147156.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
kaustophilus HTA426]
gi|375008279|ref|YP_004981912.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Geobacillus thermoleovorans CCB_US3_UF5]
gi|81347575|sp|Q5L0E8.1|MIAB_GEOKA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|56379680|dbj|BAD75588.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|359287128|gb|AEV18812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Geobacillus thermoleovorans CCB_US3_UF5]
Length = 531
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 219/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NT ++A + + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGELGY 141
Query: 115 ----KSAKKPLV--VAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ L+ V GC+ Q + LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKERL 438
Query: 401 RELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + A EG+V + + E + L G+T+ V +++G
Sbjct: 439 KRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 498
Query: 458 ALVKITSVGRWSVFGEVI 475
V+IT W++ GE++
Sbjct: 499 VNVRITQAKTWTLTGELV 516
>gi|374626085|ref|ZP_09698499.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
gi|373914611|gb|EHQ46426.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 8_2_54BFAA]
Length = 428
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 216/421 (51%), Gaps = 23/421 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+T+ T GC N +S M + GY D + AD+++INT + +T +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 112 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 164
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 165 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKGQVNDQIKHERAN 355
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
L + + ++ + + + DG +L+GH Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 462 I 462
I
Sbjct: 416 I 416
>gi|237735920|ref|ZP_04566401.1| 2-methylthioadenine synthetase [Mollicutes bacterium D7]
gi|229381665|gb|EEO31756.1| 2-methylthioadenine synthetase [Coprobacillus sp. D7]
Length = 428
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 216/421 (51%), Gaps = 23/421 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+T+ T GC N +S M + GY D + AD+++INT + +T +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 112 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 164
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 165 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
L + + ++ + + + DG +L+GH Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 462 I 462
I
Sbjct: 416 I 416
>gi|303228532|ref|ZP_07315360.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
gi|302516779|gb|EFL58693.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-134-V-Col7a]
Length = 438
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 220/443 (49%), Gaps = 32/443 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NT + +T
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 111 --IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 164 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM- 453
R ++L + + L MEG+V I + +A D G T G VL P +
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELT 414
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G + I W +G + K
Sbjct: 415 IGDTVPAYIDKAQTWVCYGTIQK 437
>gi|257791365|ref|YP_003181971.1| MiaB family RNA modification protein [Eggerthella lenta DSM 2243]
gi|257475262|gb|ACV55582.1| RNA modification enzyme, MiaB family [Eggerthella lenta DSM 2243]
Length = 459
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 142/454 (31%), Positives = 216/454 (47%), Gaps = 50/454 (11%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAMDT------- 109
T ++TFGC N+ DSE +AG L G D E+AD+ T + A DT
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLYGQVA 68
Query: 110 ------LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
L A +K+ + V GC+ Q G + + EL+ + +V G + + ++E L+
Sbjct: 69 SLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALE 128
Query: 161 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
H+V +L +LP R +++ LPI +GC C+YC + RG S +E
Sbjct: 129 EGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGSPRFAQVLDA-LDQTGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + LR + LH+PVQSGSDAVL+AMNR YT +R +V L + VP
Sbjct: 247 KDLNDEVVGRFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M P V++
Sbjct: 305 IALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQ 364
Query: 398 KRSRELTSV-----FEAFTPYLG------MEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
+R L + FEA LG +EG +R D L G + V
Sbjct: 365 QRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKR--------DERLLAGKSPKNQTVH 416
Query: 447 VPSTG-----NMLGTSALVKITSVGRWSVFGEVI 475
P+ ++ G++ V++ W + GE++
Sbjct: 417 APAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIV 450
>gi|297530521|ref|YP_003671796.1| tRNA-i(6)A37 thiotransferase protein MiaB [Geobacillus sp. C56-T3]
gi|448237459|ref|YP_007401517.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
gi|297253773|gb|ADI27219.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. C56-T3]
gi|445206301|gb|AGE21766.1| tRNA-i(6)A37 modification enzyme [Geobacillus sp. GHH01]
Length = 531
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 218/439 (49%), Gaps = 28/439 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG A GY TD EEA++ L+NT ++A + + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVILLNTCAIRENAENKVFGEL-G 140
Query: 117 AKKPLV---------VAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
KPL V GC+ Q + LK+ + V ++ G I R+ ++ E
Sbjct: 141 YLKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLIFGTHNIHRLPYILHEAYMSK 200
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E V + ++ +LPKVR+ K + I GC CTYC + RG S E ++
Sbjct: 201 EMVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDII 260
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 261 QEVRQLAAQGYKEITLLGQNVNAYGKDF-TDIQYGLGDLMDELRKIDIARIRFTTSHPRD 319
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P +
Sbjct: 320 FDDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVA 377
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 378 LTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAANMKDNVPMEVKKER 437
Query: 400 SRELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
+ L + + A EG+V + + E + L G+T+ V +++G
Sbjct: 438 LKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQ 497
Query: 457 SALVKITSVGRWSVFGEVI 475
V+IT W++ GE++
Sbjct: 498 LVNVRITQAKTWTLTGELV 516
>gi|448623042|ref|ZP_21669691.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
gi|445753550|gb|EMA04967.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
denitrificans ATCC 35960]
Length = 429
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 225/430 (52%), Gaps = 41/430 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 DVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKI 462
V A+ +G E V + + E D + + Y Q++V +T + L ++
Sbjct: 347 DIVAAAYEEMVGTERDV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 463 TSVGRWSVFG 472
T +V+
Sbjct: 403 TVTAHQTVYA 412
>gi|218437115|ref|YP_002375444.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 7424]
gi|229890508|sp|B7K993.1|MIAB_CYAP7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218169843|gb|ACK68576.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7424]
Length = 454
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 148/455 (32%), Positives = 228/455 (50%), Gaps = 50/455 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
++ TFGC N++DSE MAG L GY +D+ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDIGYQWSDDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 118 -----KKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
+KP L+VAGCV Q G + L+ + + +V G Q +R+ ++++E L G++V
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLQDLLQEVLAGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR V +NV GC CTYC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPQAIRAEMV 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 277 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+P + E L KE+ +V H H+P QSG + +L AM R YT +R ++D +
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNDLLKAMKRGYTHERYRQIIDKI 298
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 392
E +P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA
Sbjct: 299 REYMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQL 358
Query: 393 SAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQV 445
S VK +R L ++ E YL GR+E + + ++ D ++G T+G
Sbjct: 359 SEEVKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDVNPKDLTQVMGRTRGNRLT 415
Query: 446 LVPSTGNML-GTSALVKITSVGRWSVFGEVIKILN 479
N L G VKIT V +S+ GE +KIL+
Sbjct: 416 FFTGDINQLKGQLVEVKITDVRAFSLTGEPVKILS 450
>gi|365830337|ref|ZP_09371918.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
gi|365263441|gb|EHM93274.1| MiaB-like tRNA modifying enzyme [Coprobacillus sp. 3_3_56FAA]
Length = 428
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 216/421 (51%), Gaps = 23/421 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+T+ T GC N +S M + GY D + AD+++INT + +T +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 112 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 164
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L+ E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLETGEMVIK 121
Query: 165 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQRLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
L + + ++ + + + DG +L+GH Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 462 I 462
I
Sbjct: 416 I 416
>gi|88603600|ref|YP_503778.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
gi|88189062|gb|ABD42059.1| MiaB-like tRNA modifying enzyme [Methanospirillum hungatei JF-1]
Length = 428
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 215/427 (50%), Gaps = 41/427 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
I ++TFGC++N DS+ +A L+A G + + E A++ +INT S ++ + S
Sbjct: 31 ICIRTFGCAYNVGDSDLLASVLTASGSVIVSDPELAEVMIINTCIVIASTERKMLKEISS 90
Query: 117 -AKKPLVVAGCVPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
+ V GC+P L+E V ++ I R V KG
Sbjct: 91 YPDHEVYVTGCLPLALPESLQEHTTVKLIHPDSIHRAAATVSYDQKGP------------ 138
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 234
V ++ I GC+G+C YC T+ ARG + S + + + + + G E+
Sbjct: 139 -----------VSVVQIGPGCVGSCRYCITRCARGSIRSNSPHQIYSHIASCVRGGAVEI 187
Query: 235 WLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
L+ +D AYG D G +L LL I A PD T +R+GM NP + + +A +
Sbjct: 188 RLAGQDLSAYGHDTGQWSLATLLEGIPAL--PD-ITRIRLGMMNPATLKPIAQRVARTMN 244
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+ +SFLH+P+QSGSD VL M R YT++D + ++D + + IATDII GFPGET
Sbjct: 245 NGPFFSFLHLPIQSGSDHVLDLMGRGYTVADVQNIIDIFRAEMSDITIATDIITGFPGET 304
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPY 413
D+D +TV LI+ V+++++ RPGT +R ++P + K+RSR + + E++T +
Sbjct: 305 DDDHEETVRLIRRIAPGMVNVTRYSWRPGTGMSRDHELPDRIRKERSRAI--IRESYTMF 362
Query: 414 L----GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWS 469
M+G V R+ TE G ++ ++ Y V++ LG +V IT
Sbjct: 363 QKANEKMKGAVMRVIPTEQLKPG-SVMARSERYEGVVIREECQ-LGIPCMVTITGSTPHY 420
Query: 470 VFGEVIK 476
+ GEVI+
Sbjct: 421 LIGEVIR 427
>gi|448583429|ref|ZP_21646785.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
gi|445729658|gb|ELZ81253.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax gibbonsii
ATCC 33959]
Length = 429
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 226/436 (51%), Gaps = 43/436 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 EAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
V H +Y+F+H PVQSGSD VL M R++ + FR + +T + ++TD I G
Sbjct: 227 AVFAEHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIAETFDRELAYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETDED +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDEDHERSMELLREIRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALV 460
V A+ +G E V + + E D + + Y Q++V + G G A V
Sbjct: 347 DIVAAAYDEMVGTEREV--LVVQEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 461 KITSVGRWSVFGEVIK 476
K+T+ F E ++
Sbjct: 403 KVTAHQTVYAFAEPVE 418
>gi|89100455|ref|ZP_01173317.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
gi|89084798|gb|EAR63937.1| hypothetical protein B14911_05476 [Bacillus sp. NRRL B-14911]
Length = 450
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 228/449 (50%), Gaps = 38/449 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY TD +D+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQEGYERTDFESASDVYIINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL +LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F +D L E +PG
Sbjct: 240 DEVIEVMDKSEVVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLDRLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ ++ +
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQIDEEIKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTG 451
+R L S+ + E V + EI + G++ VG+T Y++V+ P++
Sbjct: 354 ERVHRLISLSDQLAKEYASQFENEVLEVIPEEIYKEDPESGLY-VGYTDNYLKVVFPASE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQ 480
M+G VKI+ G G+ ++++++
Sbjct: 413 EMVGKIVKVKISKAGYPFNEGQFVRVVDE 441
>gi|195098944|ref|XP_001997957.1| GH23519 [Drosophila grimshawi]
gi|193891550|gb|EDV90416.1| GH23519 [Drosophila grimshawi]
Length = 214
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 118/160 (73%)
Query: 316 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375
M REY DF VVD L VPG+ IATDIICGFP ET++DF +T+ L ++Y+FP + I+
Sbjct: 1 MKREYCRKDFEHVVDFLRSRVPGLTIATDIICGFPTETEQDFEETMTLCEKYQFPSLFIN 60
Query: 376 QFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHL 435
QF+PRPGTPAA+M+++P+ +VKKR++ LT +F ++ PY G EG++ + +TEI+ D +H
Sbjct: 61 QFFPRPGTPAAKMERIPANLVKKRTKRLTDLFYSYEPYAGREGQLYTVLVTEISHDKLHY 120
Query: 436 VGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
VGH K Y QVL+P N+LGT V+ITS ++S+ GE++
Sbjct: 121 VGHNKSYEQVLLPMRKNLLGTRVRVRITSSSKFSMMGEIL 160
>gi|342732600|ref|YP_004771439.1| MiaB-like tRNA modifying protein [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384455992|ref|YP_005668587.1| MiaB family RNA modification protein [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|417965715|ref|ZP_12607202.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|417969118|ref|ZP_12610080.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|418015993|ref|ZP_12655558.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372854|ref|ZP_12964946.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342330055|dbj|BAK56697.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506328|gb|EGX28622.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984335|dbj|BAK80011.1| RNA modification enzyme, MiaB family [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|380335944|gb|EIA26026.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-4]
gi|380338487|gb|EIA27374.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp. SFB-co]
gi|380342523|gb|EIA30968.1| MiaB-like tRNA modifying enzyme [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 434
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 230/443 (51%), Gaps = 42/443 (9%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LIAKCK 115
+ T GC N D+E M L + + E AD++ INT + +T I+KCK
Sbjct: 5 ISTLGCRVNIYDTEIMISALKEDDFEVVSYDEFADVYCINTCTVTNTSDKKSRQFISKCK 64
Query: 116 SAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQ---QIDRVVEVVEETLKGHEVRLLH 168
++A GC PQ S+D + E++ V+I+ G + Q+ + + ET G +V +
Sbjct: 65 KINPKAIIAMVGCYPQVSKDEVSEIKDVNIILGNRFKGQLPYYIRLFLET--GKQVIKVD 122
Query: 169 RKKLPALDLP----KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
L + + ++K + I GC CTYC ARG + S + VR
Sbjct: 123 DNILRNISFEDRSIRTLKDKHRAFIKIQDGCNKFCTYCIIPFARGGVCSKEPRKIFDEVR 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPF--- 280
+++++G KEV L+ +T +YG D+G+++ ++ L ++ E+ DG +R+G +P F
Sbjct: 183 SLVSNGYKEVVLTGINTTSYGDDLGIDINLVSLIELLDEI--DGLERIRVGSVDPEFFTT 240
Query: 281 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
I+E + +I +++ H H+ +QSG D+VL M R+Y +S ++ VV+ L + +
Sbjct: 241 EIVERMSKIKKLMPH------FHLSLQSGCDSVLKRMRRKYDISLYKKVVEDLRREIEDV 294
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
I TDII GFPGETD++FN+T N +K K +H+ ++ R GT AA M+ +V + +K
Sbjct: 295 SITTDIIVGFPGETDDEFNETYNFLKNIKLQDMHVFKYSKRNGTKAAEMENQVDVHIKEK 354
Query: 399 RSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
RS+ L + + YLG ++ ++ TE+ +D + G+TK Y++V++
Sbjct: 355 RSKSLIDLNKLNKIDFQKKYLGQT--LDVLYCTEL-SDNNGVYGYTKNYIKVVLNDEKKY 411
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
LG +I + + G+ +K
Sbjct: 412 LGKIVSTRIVDLENDHLIGQALK 434
>gi|336114420|ref|YP_004569187.1| MiaB family RNA modification protein [Bacillus coagulans 2-6]
gi|335367850|gb|AEH53801.1| RNA modification enzyme, MiaB family [Bacillus coagulans 2-6]
Length = 450
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 224/447 (50%), Gaps = 32/447 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY TD AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQAGYERTDFETNADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
V V GC Q S ++ E+ GV +V G Q +++ +E+ LK +
Sbjct: 63 RAVRQNPDAVVCVTGCYAQTSPGEILEIPGVDVVVGTQDRTKMLGYIEQYLKERKPVNAV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +++P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 123 KNIMKNRVYEEMEVPYFT-DRHRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVIAQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG+D+ NL +LL + E G +RI +
Sbjct: 182 QQLVDAGYKELVLTGIHTGGYGQDLKDYNLAMLLRDL--EEKVQGLKRVRISSIEASQLT 239
Query: 283 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ V++H V +HVP+QSGSD VL M R+YT+ F + L E +PG+ +
Sbjct: 240 D---EVIGVIKHSKVVVRHMHVPIQSGSDTVLKRMRRKYTMDQFAERITKLKEALPGLAL 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE++F ++H+ + PR GTPAARMK ++ + +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHRFAELHVFPYSPRTGTPAARMKDQIDEEIKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWI------TEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+ ++ + + E + + E G++ G+T Y++V+ P+T +M+
Sbjct: 357 HRMIALSDQLAKEYASQFENEVLEVIPEEPFKEDPESGLY-EGYTDNYLKVVFPATPDMV 415
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQV 481
G VKIT G + +++++ V
Sbjct: 416 GKLVKVKITKAGYPYNEAQFVRVMDDV 442
>gi|345019810|ref|ZP_08783423.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Ornithinibacillus scapharcae TW25]
Length = 525
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 219/437 (50%), Gaps = 26/437 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC---- 114
++T+GC N+ D+E MAG LS GY T + EAD+ L+NT ++A + + +
Sbjct: 86 IRTYGCQMNEHDTEVMAGILSEMGYESTTETSEADLILLNTCAIRENAENKVFGEIGHLK 145
Query: 115 --KSAKKPLV--VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
K+ K L+ V GC+ Q R +K+ + + +V G I R+ +V+E + G E
Sbjct: 146 PLKTEKPDLILGVCGCMSQEESVVDRIMKKHQHIDLVFGTHNIHRLPNLVQEAMFGKEQV 205
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ +LPK R+ K + I GC CTYC RG S + ++ +
Sbjct: 206 VEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPDDIIQEI 265
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + A+G +EV L ++ AYG+D ++ ++ ++ +R ++P +
Sbjct: 266 RHLAAEGYQEVTLLGQNVNAYGKDFE-DIDYRFGDLMDDIRKIDIPRIRFTTSHPRDFDD 324
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HL E+ + + + +H+PVQSGS VL MNR+YT D+ VV + E +P + T
Sbjct: 325 HLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMNRKYTREDYLEVVRKIREAIPNATLTT 382
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII GFP ETDE F +T+ L++E F + + PR GTPAA+ K VP V K+R
Sbjct: 383 DIIVGFPNETDEQFEETMTLVEEVGFEAAYTFIYSPREGTPAAKKKDDVPEEVKKQRLYR 442
Query: 403 LTSVF--EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L + ++ EG+ ++ + E D L G+T+ V + +G
Sbjct: 443 LNELVNKQSAASMKSYEGKTVKVLVEGESKKDPNILAGYTEKNKLVNFKGPKSSIGKIVD 502
Query: 460 VKITSVGRWSVFGEVIK 476
VKIT WS+ G +++
Sbjct: 503 VKITETKTWSLNGVMVE 519
>gi|401679751|ref|ZP_10811675.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
gi|400218878|gb|EJO49749.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. ACP1]
Length = 438
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 218/443 (49%), Gaps = 32/443 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NT + +T
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVESADLILLNTCAVRETAETKVFGRI 61
Query: 111 --IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKDLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVKRTHK 121
Query: 164 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM- 453
R ++L + + L MEG V I + A D G T G VL P +
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGHVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELT 414
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G + I W +G + K
Sbjct: 415 IGDTVPAYIDKAQTWVCYGTIQK 437
>gi|448600667|ref|ZP_21656046.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
gi|445734680|gb|ELZ86236.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
alexandrinus JCM 10717]
Length = 429
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 135/430 (31%), Positives = 223/430 (51%), Gaps = 41/430 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKI 462
V A+ +G E V + + E D + + Y Q++V +T + L ++
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 463 TSVGRWSVFG 472
T +V+
Sbjct: 403 TVTAHQTVYA 412
>gi|338730816|ref|YP_004660208.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
gi|335365167|gb|AEH51112.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga thermarum DSM
5069]
Length = 433
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 223/435 (51%), Gaps = 26/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----------QSAMDT 109
IY+KT+GC N++D+E MAG L+ G+ + D+ ++AD+ ++NT SA+
Sbjct: 3 IYIKTYGCQMNENDTEIMAGILAQKGHQIVDDLDQADVVILNTCVVRQKSQDKYHSALGQ 62
Query: 110 LIAKCKSAKKPLV-VAGCVPQGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 167
L+ K K LV ++GC + +G V G + I V EV+E G +V L
Sbjct: 63 LLKMKKEGKIKLVGISGCGANLEAEQLIKDGADFVLGSRSILAVAEVLERAASGEKVIYL 122
Query: 168 HRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+ LP+ R + + I GC CTYC + RG S +E ++ V+ +
Sbjct: 123 EDTICSDMSSLPRSRSSTHHAWVTIIHGCNRFCTYCIVPYTRGREKSRPMEDVLAEVKKL 182
Query: 227 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
GVKE+ ++ AYG+D+ G +L L+N +E+ +G + + P I +
Sbjct: 183 AESGVKEITFLGQNVDAYGKDLKDGTSLAKLINK-ASEI--EGIERIWFLTSYPTDITDE 239
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L I V ++P H+P+QSGS+ +L MNR YT F +V+ + ++VP I++D
Sbjct: 240 L--IETVAKNPKAAKSFHIPIQSGSNRILRLMNRRYTREQFAELVEKIRKIVPQASISSD 297
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 402
+I GFP ET+ED QTV ++K +F +++++ + PRPGT A++ K VP V +R E
Sbjct: 298 VIVGFPTETEEDHQQTVEIVKTLQFERLNLAIYSPRPGTVASKYFKDDVPREVKVRRLNE 357
Query: 403 LTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L + + L +V +++ DG++ + + +L ++ +G LV
Sbjct: 358 LLELQKEINKKLNERYLNQVVELFVEGKTKDGLYYGRDIRNKI-ILFKASALQIGQRVLV 416
Query: 461 KITSVGRWSVFGEVI 475
KIT + ++GE++
Sbjct: 417 KITRITAGPLYGELV 431
>gi|228923063|ref|ZP_04086355.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423634866|ref|ZP_17610519.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
gi|228836561|gb|EEM81910.1| hypothetical protein bthur0011_40430 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401278852|gb|EJR84782.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD156]
Length = 450
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + G EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|150401611|ref|YP_001325377.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
gi|150014314|gb|ABR56765.1| MiaB-like tRNA modifying enzyme [Methanococcus aeolicus Nankai-3]
Length = 449
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 200/391 (51%), Gaps = 45/391 (11%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT-------QSAMDT 109
T I+++ +GC+ N +D+ + + F + + +N ++ADI +INT + M +
Sbjct: 5 TLKIFIEGYGCTLNTADTNIINNSIKKFKNFIIVNNLDDADIVVINTCVVRLETEHKMIS 64
Query: 110 LIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIV-------------------GVQQIDR 150
I KS K +V+AGC+P+ + E I+ + +
Sbjct: 65 RINYIKSLNKYIVIAGCMPKALKKKAEKINPDILIMPKEAHLIGDIIYNYFKNNIGNENN 124
Query: 151 VVEVVEETLKGHEVRLLHRKKLPA-----LD--LPKVRRNKFVEILPINVGCLGACTYCK 203
+E+++K E L H + + +D L +++ N + LPI+ GC G CTYC
Sbjct: 125 ADNKIEDSMKCGE--LPHNQASSSGNYNDIDNKLTQLKPNNLIMPLPISEGCTGKCTYCI 182
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263
K ARG L SY + ++ + + + +GVK++ ++S+DT YG D LP LLN I
Sbjct: 183 VKIARGRLASYNPDKIINKAKEFVDNGVKQMLITSQDTACYGFDKNTTLPTLLNEICQ-- 240
Query: 264 PPDGSTMLRIGMT---NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 320
G +RIGM N P I++ E+ + + + F H+P+QSG D VL AM REY
Sbjct: 241 -IKGDFNIRIGMMHAKNVPMIID---ELIDRYKDDKITKFFHLPIQSGDDDVLRAMKREY 296
Query: 321 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380
T+ ++ + + + TD+I GFP ET+++FN T+ L+K+ K +H +++ R
Sbjct: 297 TVDEYMDIAMEFKRKIKDLNFNTDVIVGFPTETEDNFNNTIELLKKLKPDAIHGAKYTQR 356
Query: 381 PGTPAARMKKVPSAVVKKRSRELTSVFEAFT 411
GT A R+K+V + + K+R + L + + F+
Sbjct: 357 KGTEADRLKQVDTKIRKERMKILDKLRKEFS 387
>gi|303232055|ref|ZP_07318758.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
gi|302513161|gb|EFL55200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella atypica
ACS-049-V-Sch6]
Length = 438
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 219/443 (49%), Gaps = 32/443 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T+GC N +DSE ++ QL GY TD+ E AD+ L+NT + +T
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLETVGYIPTDDVELADLILLNTCAVRETAETKVFGRI 61
Query: 111 --IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L++A GC+ Q ++ K + IV G I + E++ E + H+
Sbjct: 62 GELKRLKQKNKNLIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHK 121
Query: 164 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + LP L F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQINVDMDNTVLPELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTELGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + TDII GFPGET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKR 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM- 453
R ++L + + L MEG+V I + A D G T G VL P +
Sbjct: 355 VRLQQLMDIQNEISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELT 414
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G + I W +G + K
Sbjct: 415 IGDTVPAYIDKAQTWVCYGTIQK 437
>gi|419760967|ref|ZP_14287228.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
gi|407513872|gb|EKF48745.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus H17ap60334]
Length = 429
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 229/441 (51%), Gaps = 37/441 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
++KT+GC N++DSE L GY +N EADI ++NT + A D I +
Sbjct: 3 FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 63 LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118
Query: 170 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
KL +D + R +K + I GC CTYC + RG S +E ++ V+ +
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMEDILQEVKNLS 178
Query: 228 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP--FIL 282
+GV+E+ ++ AYG+D+ G +L LLN + + RI +T+ P F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKNIENIERIWFLTSYPTDFSL 233
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ +EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP I+
Sbjct: 234 DIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASIS 290
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKRS 400
+DII GFP ET++DF QTV L+KE KF +++++ + PR GT A + VP AV +R
Sbjct: 291 SDIIVGFPDETEDDFQQTVKLVKEIKFERLNLAIYSPREGTIAWKYFEDNVPHAVKTRRM 350
Query: 401 RELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L ++ + L ++ VE I + E A G+ + + + +++G
Sbjct: 351 AYLLNLQKEVNKMLNESYLDKTVEVI-VEERAKSGLFYGRDIRNKI-IAFEGDESLIGKK 408
Query: 458 ALVKITSVGRWSVFGEVIKIL 478
LVKI ++G++IKI+
Sbjct: 409 ILVKIKKTTAGPLYGDIIKII 429
>gi|428215096|ref|YP_007088240.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
gi|428003477|gb|AFY84320.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoria acuminata PCC 6304]
Length = 452
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 150/452 (33%), Positives = 220/452 (48%), Gaps = 52/452 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ +AD+ L NT S D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFQFSEDPNQADLILYNTCSIRDNAEHKVYSYLGRQ 68
Query: 117 AKKPL-------VVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 164
AK+ L +VAGCV Q R + EL+ V +G Q +R+ +++E+ G++V
Sbjct: 69 AKRKLQQPNLTLIVAGCVAQQEGEALLRRVPELDMV--MGPQHANRLEDLLEQVFAGNQV 126
Query: 165 ---RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 219
LH + D+ K RR V +NV GC CTYC RG S T E++
Sbjct: 127 VATEALHIME----DITKPRRESQVTAW-VNVIYGCNERCTYCIVPSVRGIEQSRTPEAI 181
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTML 271
+ + G KEV L ++ AYGRD+ G NL L + + V ++P G +
Sbjct: 182 RAEMEELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERI 239
Query: 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
R ++P + E L + L P V H+P QSG + +L AM R YT +R ++D
Sbjct: 240 RFATSHPRYFTERLIRACQEL--PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDM 297
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 391
+ +P I+ D I GFPGET+E F T+ L++E F ++ + + PRPGTPAA +
Sbjct: 298 IRHYMPDASISADAIVGFPGETEEQFENTLKLLEEISFDMLNTAAYSPRPGTPAAVWENQ 357
Query: 392 PSAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQ 444
S VK +R L S+ E YL GR+E + + E D ++G T+G
Sbjct: 358 LSEEVKSDRLQRLNHLVSIKAAERSQRYL---GRIEEVLVEEQNTKDPTQVMGRTRGNRL 414
Query: 445 VLVPSTGNML-GTSALVKITSVGRWSVFGEVI 475
N L G VKIT +S+ GE I
Sbjct: 415 TFFTGDINQLKGQLVQVKITESRAFSLSGEAI 446
>gi|423452386|ref|ZP_17429239.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
gi|401140024|gb|EJQ47581.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X1-1]
Length = 450
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 222/443 (50%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + G EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|402564224|ref|YP_006606948.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
gi|401792876|gb|AFQ18915.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-771]
Length = 450
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINVV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|167754793|ref|ZP_02426920.1| hypothetical protein CLORAM_00297 [Clostridium ramosum DSM 1402]
gi|167705625|gb|EDS20204.1| tRNA methylthiotransferase YqeV [Clostridium ramosum DSM 1402]
Length = 428
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 215/421 (51%), Gaps = 23/421 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+T+ T GC N +S M + GY D + AD+++INT + +T +I
Sbjct: 2 KTVAFHTLGCKVNTYESNAMLKIFNEAGYQEVDFKQVADVYVINTCTVTNTGDSKSRQMI 61
Query: 112 AKC--KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--- 164
K K+ K + V GC Q + +++++EGV +V G Q +V+ V+E L E+
Sbjct: 62 RKAIRKNPKATICVVGCYSQTAPEEIEKIEGVGVVLGTQYRSDIVKYVDEHLGTGEMVIK 121
Query: 165 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+++ +K L++ + + + L I GC CTYC +ARG + S ES++ +
Sbjct: 122 VDNVMNLRKFEDLNIDRFKNTR--AFLKIQDGCNNFCTYCIIPYARGRVRSRQKESVLNQ 179
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ +G E+ L+ T YG D+ + +V + G LRI I
Sbjct: 180 AQKLVDNGYVEIVLTGIHTAGYGEDL--DDYSFYELLVDLVKIKGLKRLRISSIETSQIS 237
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + ++ + + + LHVP+Q+GSDA L MNR+YT +++ ++ + +P +
Sbjct: 238 DEIIDL--IGSNEIIVDHLHVPLQAGSDATLKRMNRKYTTAEYLEKINKIRSYLPNIAFT 295
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TD+I GFPGETDE+F +T N IK+ + ++H+ + PR TPAA+MK +V + +R+
Sbjct: 296 TDVIVGFPGETDEEFEETYNFIKQVNYSELHVFPYSPRKNTPAAKMKDQVNDQIKHERAN 355
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
L + + ++ + + + DG +L+GH Y++V V + N++G +K
Sbjct: 356 RLLQLSKELNHEFALKQIGKTLKVLFEKRDGEYLIGHAGDYLKVKVKTADNLIGEIVTIK 415
Query: 462 I 462
I
Sbjct: 416 I 416
>gi|448731554|ref|ZP_21713853.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
gi|445791882|gb|EMA42501.1| MiaB-like tRNA modifying enzyme [Halococcus saccharolyticus DSM
5350]
Length = 414
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 138/432 (31%), Positives = 221/432 (51%), Gaps = 36/432 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-------MDTLIA 112
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NT + M
Sbjct: 3 SYHLETYGCTANRGESRTIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLRRAR 62
Query: 113 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ +S LVV GC + QG + +L+ ++ G ++ VV L G E +
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTVTPG 113
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD + ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GVIGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 231 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G L LLN I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRITGQDTGVYGWDDGERKLHELLNRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
EV + +Y+FLH PVQSGSD VL M R++ + +FR VV T + + +ATD I G
Sbjct: 224 EVFAENEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVKTFDDHLDHWTLATDFITG 283
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP E+D D +++ L++E + ++++++F RPGT AA MK + + K+RS+ ++ +
Sbjct: 284 FPTESDADHEESMELLRETQPERINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSDLKM 343
Query: 409 AF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKIT 463
Y M G + + E G + + + Y Q+++ P G G V+IT
Sbjct: 344 DVVGAAYESMVGERHEVLVVEPGT-GESVKCYDEAYRQIIIQDAPEHGVAPGDFVEVEIT 402
Query: 464 SVGRWSVFGEVI 475
S FGE +
Sbjct: 403 SQNTVYAFGEPV 414
>gi|229086881|ref|ZP_04219040.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
gi|228696391|gb|EEL49217.1| hypothetical protein bcere0022_34550 [Bacillus cereus Rock3-44]
Length = 450
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEVS--GLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++V+ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|228941477|ref|ZP_04104027.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974407|ref|ZP_04134975.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981002|ref|ZP_04141304.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|384188384|ref|YP_005574280.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676699|ref|YP_006929070.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452200776|ref|YP_007480857.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
gi|228778662|gb|EEM26927.1| hypothetical protein bthur0002_41640 [Bacillus thuringiensis Bt407]
gi|228785243|gb|EEM33254.1| hypothetical protein bthur0003_41610 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818127|gb|EEM64202.1| hypothetical protein bthur0008_41150 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942093|gb|AEA17989.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175828|gb|AFV20133.1| putative methylthiotransferase YqeV [Bacillus thuringiensis Bt407]
gi|452106169|gb|AGG03109.1| MiaB family protein [Bacillus thuringiensis serovar thuringiensis
str. IS5056]
Length = 450
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 140/431 (32%), Positives = 215/431 (49%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVG 466
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|423470532|ref|ZP_17447276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
gi|402436198|gb|EJV68230.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-2]
Length = 450
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 222/443 (50%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + G EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
+KIT G + +++L
Sbjct: 417 KLVKIKITKAGYPYNEAQFVRVL 439
>gi|30022389|ref|NP_834020.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218232497|ref|YP_002369119.1| hypothetical protein BCB4264_A4429 [Bacillus cereus B4264]
gi|218899478|ref|YP_002447889.1| MiaB family RNA modification protein [Bacillus cereus G9842]
gi|228902835|ref|ZP_04066979.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|228954596|ref|ZP_04116620.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229071815|ref|ZP_04205029.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|229081572|ref|ZP_04214069.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|229129590|ref|ZP_04258559.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|229152512|ref|ZP_04280703.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|423358653|ref|ZP_17336156.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|423385812|ref|ZP_17363068.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|423426443|ref|ZP_17403474.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|423437756|ref|ZP_17414737.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|423503004|ref|ZP_17479596.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|423527831|ref|ZP_17504276.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|423561222|ref|ZP_17537498.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|434377478|ref|YP_006612122.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|449091273|ref|YP_007423714.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
gi|29897947|gb|AAP11221.1| Fe-S oxidoreductase [Bacillus cereus ATCC 14579]
gi|218160454|gb|ACK60446.1| conserved hypothetical protein [Bacillus cereus B4264]
gi|218544457|gb|ACK96851.1| RNA modification enzyme, MiaB family [Bacillus cereus G9842]
gi|228630943|gb|EEK87581.1| hypothetical protein bcere0011_40490 [Bacillus cereus m1550]
gi|228653858|gb|EEL09727.1| hypothetical protein bcere0015_40320 [Bacillus cereus BDRD-Cer4]
gi|228701728|gb|EEL54217.1| hypothetical protein bcere0023_42040 [Bacillus cereus Rock4-2]
gi|228711294|gb|EEL63255.1| hypothetical protein bcere0025_39840 [Bacillus cereus F65185]
gi|228805042|gb|EEM51637.1| hypothetical protein bthur0006_39650 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228856791|gb|EEN01307.1| hypothetical protein bthur0014_40060 [Bacillus thuringiensis IBL
4222]
gi|401084525|gb|EJP92771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD022]
gi|401111190|gb|EJQ19089.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-2]
gi|401120911|gb|EJQ28707.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X12-1]
gi|401201479|gb|EJR08344.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MSX-A1]
gi|401635868|gb|EJS53623.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-2]
gi|401876035|gb|AFQ28202.1| MiaB family RNA modification protein [Bacillus thuringiensis
HD-789]
gi|402451494|gb|EJV83313.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB1-1]
gi|402459225|gb|EJV90962.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HD73]
gi|449025030|gb|AGE80193.1| Fe-S oxidoreductase [Bacillus thuringiensis serovar kurstaki str.
HD73]
Length = 450
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|423669894|ref|ZP_17644923.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|423673900|ref|ZP_17648839.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
gi|401299021|gb|EJS04621.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM034]
gi|401310266|gb|EJS15591.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM062]
Length = 450
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|433423456|ref|ZP_20406225.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
gi|432198354|gb|ELK54647.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax sp.
BAB2207]
Length = 429
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 224/430 (52%), Gaps = 41/430 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + +E+A
Sbjct: 169 AKELRITGQDTGVYGWDKGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIREELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKI 462
V A+ +G E V + + E D + + Y Q++V +T + L ++
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 463 TSVGRWSVFG 472
T +V+
Sbjct: 403 TVTAHQTVYA 412
>gi|228993053|ref|ZP_04152976.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
gi|228999103|ref|ZP_04158685.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|229006651|ref|ZP_04164285.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228754512|gb|EEM03923.1| hypothetical protein bmyco0002_35530 [Bacillus mycoides Rock1-4]
gi|228760720|gb|EEM09684.1| hypothetical protein bmyco0003_36600 [Bacillus mycoides Rock3-17]
gi|228766701|gb|EEM15341.1| hypothetical protein bpmyx0001_37900 [Bacillus pseudomycoides DSM
12442]
Length = 450
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIHQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL LL + AE+ +G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKNYNLAGLLRDMEAEV--NGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM ++P V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMDDQIPEEVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++V+ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEPFKDGDREGLYVGYTDNYLKVVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|423521831|ref|ZP_17498304.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
gi|401176493|gb|EJQ83688.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA4-10]
Length = 450
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + G EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|16329745|ref|NP_440473.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|383321487|ref|YP_005382340.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|383324657|ref|YP_005385510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|383490541|ref|YP_005408217.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|384435807|ref|YP_005650531.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|451813905|ref|YP_007450357.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
gi|2501538|sp|P73127.1|MIAB_SYNY3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|1652230|dbj|BAA17153.1| sll0996 [Synechocystis sp. PCC 6803]
gi|339272839|dbj|BAK49326.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803]
gi|359270806|dbj|BAL28325.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. GT-I]
gi|359273977|dbj|BAL31495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-N]
gi|359277147|dbj|BAL34664.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechocystis
sp. PCC 6803 substr. PCC-P]
gi|451779874|gb|AGF50843.1| hypothetical protein MYO_15840 [Synechocystis sp. PCC 6803]
Length = 451
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 219/450 (48%), Gaps = 42/450 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G TD+ +AD+ L NT S D K S
Sbjct: 9 HIITFGCQMNKADSERMAGILENLGMTYTDDPNQADLVLYNTCSIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-- 164
AK+ LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ G +V
Sbjct: 69 AKRKQVEPELTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDQLLEQVWAGSQVVA 128
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
LH + D+ K RR V + I GC C+YC + RG S T E++ G
Sbjct: 129 TESLHIME----DITKPRRESTVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYGE 184
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 276
+ + G KEV L ++ AYGRD+ G +L L + + +G LR +
Sbjct: 185 MEVLAQQGFKEVTLLGQNIDAYGRDLPGTTPSGRHLHTLTDLLYHVHDIEGIDRLRFATS 244
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L + + L P V H+P QSG + +L AM R YT + +++ + +
Sbjct: 245 HPRYFTERLIQACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTREKYLQIIEKIRRYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D+I GFPGET+ F T+NLI+E F ++ + + PRPGTPAA S V
Sbjct: 303 PDAAISADVIVGFPGETEAQFENTLNLIEEVGFDLLNTAAYSPRPGTPAAFWDNQLSEEV 362
Query: 397 K----KRSREL--TSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKG-YVQVLVP 448
K +R L T E YL GRVE + + E ++G T+G +
Sbjct: 363 KGDRLQRLNHLVSTQAMERSQRYL---GRVEEVLVEGENLKSPGQVMGRTRGNRLTFFQG 419
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVIKIL 478
+LG + VKIT +S+ GE + ++
Sbjct: 420 EISELLGKTVPVKITEARAFSLTGEALSLV 449
>gi|302335738|ref|YP_003800945.1| MiaB family RNA modification protein [Olsenella uli DSM 7084]
gi|301319578|gb|ADK68065.1| RNA modification enzyme, MiaB family [Olsenella uli DSM 7084]
Length = 455
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 144/449 (32%), Positives = 210/449 (46%), Gaps = 41/449 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
+T +++TFGC N DSE +AG L G +EADI + T S +
Sbjct: 10 KTYFVRTFGCQMNLHDSERVAGLLDDCGCVAVQGPDEADIVVFMTCSVREKADTHLFGEA 69
Query: 111 -----IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRV----VEVVEET 158
+ + S ++ + V GC+ Q G R + + V +V G + V VE +EE
Sbjct: 70 SNLVRLPRPPSGRRVVAVGGCIAQRDGDRLREHIPNVDVVFGTSALASVPALLVEALEEG 129
Query: 159 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
V + + +LP R F +PI GC CTYC H RG S E
Sbjct: 130 GGRVHVDTSEEGRGFSAELPSHREQDFHAWVPIMTGCDNFCTYCIVPHVRGRERSRAFER 189
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 276
+V ++ADGV+E+ L ++ +YGRD+ LL A+ G +R +
Sbjct: 190 VVDECARLVADGVREITLLGQNVNSYGRDLYGEPRFAELLQAV----GETGVERIRFTSS 245
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
NP + + IA + P V LH+ VQSGS +L AMNR YT + V+ + +
Sbjct: 246 NPKDL--SAETIAAMAGTPNVMPHLHLAVQSGSTRILKAMNRSYTREGYLDVIRDIKAAI 303
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
PG+ ++TDII GFPGET+EDF T++L++E F + + RPGTPAAR+ P V
Sbjct: 304 PGIALSTDIIVGFPGETEEDFLDTLSLVEEVGFASAYTFIYSRRPGTPAARITDDTPREV 363
Query: 396 VKKRSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV--- 447
++ R L S+ EA PY G RVE + D LVGH+ VL+
Sbjct: 364 IQGRFDRLASLVERLAHEANVPYQG--SRVEALIEGASKKDDRVLVGHSPHNQTVLLDLP 421
Query: 448 --PSTGNMLGTSALVKITSVGRWSVFGEV 474
G+ +GT V +T W + GE+
Sbjct: 422 EGSHAGDFVGTLCDVHVTEARTWYLRGEL 450
>gi|20094517|ref|NP_614364.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
gi|19887629|gb|AAM02294.1| 2-methylthioadenine synthetase [Methanopyrus kandleri AV19]
Length = 423
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/355 (33%), Positives = 186/355 (52%), Gaps = 14/355 (3%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK- 119
+ ++ +GC+ N D + L G+ + +++E AD+ ++ T D++ A+ + +
Sbjct: 4 VAVEVYGCAANHDDGRLVRELLRREGFEVVEDAENADVAVLLTCIVRDSVDARMVNRMRE 63
Query: 120 ----PLVVAGCVPQG--SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL-HRKKL 172
P VVAGC P+ R K ++VG + +DR+ E V L+G V L R+ +
Sbjct: 64 LERVPTVVAGCFPEAYPERARKLRPDAALVGPRHLDRIPEAVRAVLRGDRVEFLGEREDI 123
Query: 173 P-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
D P+ N I+PI GC C YC K ARG+L S+ E ++ RV+ + G
Sbjct: 124 DWKADAPRELPN-LAAIVPIAEGCPNRCAYCAVKLARGNLRSFPPERILRRVKRELERGA 182
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ L+++DT YG D G N+ LL +V +L +R+GM NP ++A++
Sbjct: 183 VEIHLTAQDTATYGLDRGTNVVELLEDVV-DLCSRYGARVRLGMFNPGHAYPISDDLADL 241
Query: 292 L--RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
R +Y +H+PVQSG D VL MNR YT+ + V + TD+I GF
Sbjct: 242 FASRDDVLYRSIHMPVQSGDDEVLRRMNRNYTVEEALEVYRAFERRLGYFSFITDVIVGF 301
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 403
PGET+E F T+ ++ + +H S+F RPGTPAARM+ +VP V +RSR L
Sbjct: 302 PGETEEAFRNTLRFLERTRPHILHASRFCRRPGTPAARMEDQVPEDVKLRRSRIL 356
>gi|229093380|ref|ZP_04224485.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
gi|228689974|gb|EEL43777.1| hypothetical protein bcere0021_41060 [Bacillus cereus Rock3-42]
Length = 478
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 148/482 (30%), Positives = 234/482 (48%), Gaps = 31/482 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISSQVRQDKCSSCSSQNESSACSNE 515
VKIT G + +++L D K ++RI ++ + S E + N
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVLED-DVKKGISKRIKKSMQTETICMLSFFVEKLSTENV 475
Query: 516 PD 517
D
Sbjct: 476 RD 477
>gi|448440848|ref|ZP_21588846.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
gi|445689756|gb|ELZ41982.1| MiaB-like tRNA modifying enzyme [Halorubrum saccharovorum DSM 1137]
Length = 442
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/438 (31%), Positives = 218/438 (49%), Gaps = 36/438 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHHPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ + LVV GC+ ++ E V +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGEMFEEAEVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAEV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y F+H PVQSGSD VL M R++ + FR +VDT + + ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDEVLEDMRRQHRVEKFREIVDTFDDRLDHWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD+D ++++L+ E + ++++++F RPGT AA MK + + K+RS+ ++
Sbjct: 288 TETDDDHERSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSELKMEV 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V EA+ +G E + + E D + Y Q++V + G +G +++
Sbjct: 348 VGEAYESMVGE--TFEVLVVEEGTGDSVKC--RDGAYRQIIVQNATERGVDVGDFLTIEV 403
Query: 463 TSVGRWSVFGEVIKILNQ 480
T FGE + ++
Sbjct: 404 TGHNTVYAFGEPVAAADR 421
>gi|423558106|ref|ZP_17534408.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
gi|401191374|gb|EJQ98396.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
MC67]
Length = 450
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAKV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + G EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|423582518|ref|ZP_17558629.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
gi|401213397|gb|EJR20138.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD014]
Length = 450
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + G EG V I E +G VG+T Y++++ ++G
Sbjct: 357 HRLIELSNQLAKEYASGFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGLEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|448344382|ref|ZP_21533293.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
gi|445638501|gb|ELY91629.1| MiaB-like tRNA modifying enzyme [Natrinema altunense JCM 12890]
Length = 417
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/407 (32%), Positives = 210/407 (51%), Gaps = 36/407 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
L + GC + QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
H +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDL 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 348 VADAYADMVG-EVREDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|423512424|ref|ZP_17488955.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
gi|402449395|gb|EJV81232.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-1]
Length = 450
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDRKGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|163942066|ref|YP_001646950.1| RNA modification protein [Bacillus weihenstephanensis KBAB4]
gi|229013530|ref|ZP_04170664.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|229169058|ref|ZP_04296774.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|423368361|ref|ZP_17345793.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|423489494|ref|ZP_17466176.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
gi|423495217|ref|ZP_17471861.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|423497989|ref|ZP_17474606.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|423519010|ref|ZP_17495491.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|423591694|ref|ZP_17567725.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|423598373|ref|ZP_17574373.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|423660845|ref|ZP_17636014.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|163864263|gb|ABY45322.1| RNA modification enzyme, MiaB family [Bacillus weihenstephanensis
KBAB4]
gi|228614467|gb|EEK71576.1| hypothetical protein bcere0007_40100 [Bacillus cereus AH621]
gi|228747767|gb|EEL97636.1| hypothetical protein bmyco0001_39400 [Bacillus mycoides DSM 2048]
gi|401080960|gb|EJP89241.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD142]
gi|401151310|gb|EJQ58762.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER057]
gi|401160065|gb|EJQ67444.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuA2-4]
gi|401161276|gb|EJQ68643.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
CER074]
gi|401231827|gb|EJR38329.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD048]
gi|401236643|gb|EJR43100.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD078]
gi|401300886|gb|EJS06475.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VDM022]
gi|402431730|gb|EJV63794.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BtB2-4]
Length = 450
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|229062008|ref|ZP_04199334.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
gi|228717317|gb|EEL68990.1| hypothetical protein bcere0026_40810 [Bacillus cereus AH603]
Length = 450
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASKFEGEVLEIIPEETFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|229051301|ref|ZP_04194819.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
gi|229111783|ref|ZP_04241330.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|229148157|ref|ZP_04276463.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228635297|gb|EEK91821.1| hypothetical protein bcere0012_52520 [Bacillus cereus BDRD-ST24]
gi|228671657|gb|EEL26954.1| hypothetical protein bcere0018_40280 [Bacillus cereus Rock1-15]
gi|228722059|gb|EEL73486.1| hypothetical protein bcere0027_52370 [Bacillus cereus AH676]
Length = 450
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E++PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEVLPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|448569031|ref|ZP_21638443.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
gi|445725181|gb|ELZ76806.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax
lucentense DSM 14919]
Length = 429
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 223/430 (51%), Gaps = 41/430 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ L++ GC+ QG+ D +E EG+ I+ + V E G V
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-EGIDAQILHWDDVPTAVTNGECPTPGPGVE----- 117
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TK A G + S +V+ V + R ++ G
Sbjct: 118 --PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEKARALVHAG 168
Query: 231 VKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP + E+A
Sbjct: 169 AKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGVHGIRDELA 226
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T + ++TD I G
Sbjct: 227 AVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWTLSTDFIVG 286
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS--- 405
+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS+E++
Sbjct: 287 YPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERSKEMSEAKM 346
Query: 406 --VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNMLGTSALVKI 462
V A+ +G E V + + E D + + Y Q++V +T + L ++
Sbjct: 347 DIVAAAYDEMVGTERDV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGLEPGDFARV 402
Query: 463 TSVGRWSVFG 472
T +V+
Sbjct: 403 TVTAHQTVYA 412
>gi|218884393|ref|YP_002428775.1| MiaB family RNA modification protein [Desulfurococcus kamchatkensis
1221n]
gi|218766009|gb|ACL11408.1| RNA modification enzyme, MiaB family [Desulfurococcus kamchatkensis
1221n]
Length = 432
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 43/374 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-MDTLIAKCKSAK- 118
+Y++T+GC+ N+SD M + G+ L ++ E+AD +INT +DT K +
Sbjct: 3 VYIETYGCALNKSDEALMVENILREGHELVNSIEDADTLIINTCIVRLDTEYHMVKRIRE 62
Query: 119 ---------KPLVVAGCVPQGS--RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL 167
K L+VAGC+ + LK S+V Q + EV++
Sbjct: 63 LYEVASRTGKKLIVAGCMAKAEPYTVLKIAPEASLVSPQNSALITEVLKT---------- 112
Query: 168 HRKKLPALDLPKVRRNKFVEI------LPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
R K+ +D + R + + +PI GCL C++C TKHAR L S+ ++++V
Sbjct: 113 -RGKVILIDGLRERDRIGIHVEDRIAPIPIQEGCLSNCSFCITKHARRILVSHGIDAVVK 171
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V + +G E+ L+ D G YG D+ LP L+ + + G M+RIGM NP
Sbjct: 172 AVERAVRNGAVEIQLTGMDLGTYGLDLYKTRKLPELVKEVSRRV--SGEYMIRIGMINP- 228
Query: 280 FILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
EHL+ I + L VY FLH+P+QSGS+ VLS M R Y++ ++ +V+
Sbjct: 229 ---EHLRYILDDLIDAINESSKVYRFLHIPLQSGSNKVLSVMRRNYSVEEYIEIVNEAKS 285
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
+PG+ IATDII G P E +EDFN+T+ +I+E +F +VH++ + RP T +A + +VP+
Sbjct: 286 RIPGVSIATDIIVGHPMEDEEDFNETLKVIRELEFERVHLAGYSIRPLTYSASLPQVPTR 345
Query: 395 VVKKRSRELTSVFE 408
V K+R V E
Sbjct: 346 VKKERVLRALQVIE 359
>gi|292656724|ref|YP_003536621.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|448290728|ref|ZP_21481874.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|291371073|gb|ADE03300.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
gi|445578099|gb|ELY32514.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haloferax volcanii
DS2]
Length = 429
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 223/438 (50%), Gaps = 57/438 (13%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ D EEAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRVDGPEEADVAIMNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ L++ GC+ QG+ D +E +G + ++LH +
Sbjct: 65 AAETADLIITGCMALAQGN-DFRE-----------------------EGIDAQILHWDDV 100
Query: 173 PALDL--------PKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
PA P V + V ILPI GC+ C+YC TK A G + S +V+ V +
Sbjct: 101 PAAVTNGECPTPGPGVEPVLDGVVGILPIARGCMSNCSYCITKFATGRVDSPSVDENVEK 160
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
R ++ G KE+ ++ +DTG YG D G LP LL+ I E+ DG +R+GM NP +
Sbjct: 161 ARALVHAGAKELRITGQDTGVYGWDNGDRKLPELLDRICTEI--DGEFRVRVGMANPGGV 218
Query: 282 LEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E+A V RH +Y+F+H PVQSGSD VL M R++ + FR +V+T +
Sbjct: 219 HGIRDELAAVFARHDKLYNFIHAPVQSGSDEVLEHMRRQHRVDKFREIVETFDRELDYWT 278
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRS 400
++TD I G+P ETD D +++ L++E + +V++++F RPGT AA +K + + K+RS
Sbjct: 279 LSTDFIVGYPTETDADHERSMELLREVRPEKVNVTRFSKRPGTDAADLKGLGGTLKKERS 338
Query: 401 RELTS-----VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP-STGNML 454
+E++ V A+ +G E V + + E D + + Y Q++V +T + L
Sbjct: 339 KEMSEAKMDIVAAAYDEMVGTERDV--LVVEEGTGDSVKC--RDEAYRQIIVQNATEHGL 394
Query: 455 GTSALVKITSVGRWSVFG 472
++T +V+
Sbjct: 395 EPGDFARVTVTAHQTVYA 412
>gi|257063789|ref|YP_003143461.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
gi|256791442|gb|ACV22112.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Slackia heliotrinireducens DSM 20476]
Length = 451
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/371 (31%), Positives = 194/371 (52%), Gaps = 26/371 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------------Q 104
+ Y+ T+GC N+ DSE + G L A G TD E+++I + T
Sbjct: 9 SFYVFTYGCQMNEHDSERIVGMLEACGAHRTDVFEDSEIVIFMTCCVREAADVRLRGQVN 68
Query: 105 SAMDTLIAKCKSAKKPLV-VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
S + + + KK +V + GC+ Q G + + ++ V +V G Q I+R+ ++ L
Sbjct: 69 SIKNVPLPRTSELKKRVVCIGGCIGQRDGQQLIDDMHHVDVVFGTQNIERLPYLINGVLS 128
Query: 161 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
GH + + DLP R + + LPI VGC CTYC + RG S +ES
Sbjct: 129 RGGHIAEVQEESDTFSTDLPSKREHDWAAWLPITVGCNNFCTYCIVPYVRGRERSRAIES 188
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V + ++A+GV+E+ L ++ +YGRD+ P + ++ + G LR ++P
Sbjct: 189 VVADAQALVAEGVQEITLLGQNVNSYGRDL-YGEPRFAD-VLKGVAATGVPRLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + E L + + LH+PVQSGSDA+L M+R YT+ + ++D L P
Sbjct: 247 KDLTDEVIEAFGTLGN--LMPALHLPVQSGSDAILKRMHRSYTVEHYLGLIDKLRAACPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ ++TDII GFPGET+EDF T +L+++ + QV + PR GTPAA+MK P +V++
Sbjct: 305 ISLSTDIIVGFPGETEEDFQATYDLVEKVGYSQVFTFIYSPREGTPAAKMKDDTPRSVIQ 364
Query: 398 KRSRELTSVFE 408
+R L + +
Sbjct: 365 ERFERLVQMVQ 375
>gi|449020016|dbj|BAM83418.1| 2-methylthioadenine synthetase [Cyanidioschyzon merolae strain 10D]
Length = 707
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 235/477 (49%), Gaps = 57/477 (11%)
Query: 47 KTGSLSPKI-----PGTET---IY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEAD 97
++G L P++ P + T +Y ++TFGC N +DSE MAG+L GY T + EAD
Sbjct: 243 RSGELVPQLYARENPNSRTRRRLYNVQTFGCQMNLADSERMAGELERCGYRHTPDPYEAD 302
Query: 98 IWLINTQSAMDTLIAKCKSAKKP-------------LVVAGCVPQ--GSRDLKELEGVSI 142
+ L+NT S D K S P L+VAGCV Q G + L+ + + +
Sbjct: 303 LILLNTCSIRDHAEQKVYSFLGPFVRMKEKSNPGLKLIVAGCVAQQEGVKMLRRIPALDL 362
Query: 143 V-GVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACT 200
V G Q +R+ +++E+ G++V + D+ K RR V + I+ GC CT
Sbjct: 363 VMGPQYANRLADLLEDVENGNQVVATEPIHI-MEDISKPRRQSQVCAWVNISYGCNERCT 421
Query: 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNA 258
YC + RG S +VES+V V + +G +EV L ++ AYGRD+ V LL
Sbjct: 422 YCVVPYTRGLEQSRSVESIVNEVVQLKNEGYREVTLLGQNIDAYGRDMRPRVTFAQLLRH 481
Query: 259 IVAELPPDGSTMLRIGMTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLS 314
+ A G +R +P P +++ E+ P + + H+P Q+G D VL
Sbjct: 482 VSA----TGIDRIRAITAHPRYWSPRVIQATAEL------PNIMPYFHIPFQAGDDEVLK 531
Query: 315 AMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374
AM R YT +R +++ + E +P I D I GFPGET+E F +T+ L++ + V+
Sbjct: 532 AMGRGYTAKRYRRIIEMIREYLPDAAITADAIVGFPGETEEQFQRTLELMEALQLDNVNT 591
Query: 375 SQFYPRPGTPAARMK-KVPSAVVKKRSRELTS----VFEAFTP-YLGMEGRVERIWITEI 428
+ + PRP TPAA + +VP AV +R + + +A + YL GR+E + + E+
Sbjct: 592 AAYSPRPFTPAASWENQVPEAVKMERLHRINELNMRIVDARSQRYL---GRIEEVLVEEV 648
Query: 429 AADGIHL--VGHTKGYVQVLVPSTGNM---LGTSALVKITSVGRWSVFGEVIKILNQ 480
L G T+ +V + G + G A V+IT +S+ GE++ Q
Sbjct: 649 NPKSPELGVCGRTRTNKKVFFEAPGGIQRWRGRMANVRITQARAYSLTGELVATCPQ 705
>gi|319651610|ref|ZP_08005737.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
gi|317396677|gb|EFV77388.1| hypothetical protein HMPREF1013_02349 [Bacillus sp. 2_A_57_CT2]
Length = 450
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 226/450 (50%), Gaps = 36/450 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA--- 117
+ T GC N ++E + GY TD +D+++INT + +T K +
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKEAGYERTDFESVSDVYVINTCTVTNTGDKKSRQVIRR 63
Query: 118 ---KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV----- 164
K P + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 64 AIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLEYIEQYKQERQPINGVG 123
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ + LD+P ++ L I GC CT+C ARG + S + ++ + +
Sbjct: 124 NIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQAQ 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G KE+ L+ TG YG D+ NL +LL + A++ G LRI I +
Sbjct: 183 QLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDLEAQVK--GLKRLRISSIEASQITD 240
Query: 284 HLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+
Sbjct: 241 EVIEVMDQSKVVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLERLKEALPGL 294
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 398
+ +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ + +
Sbjct: 295 AVTSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDDQIDEEIKNE 354
Query: 399 RSRELTSVFEAFTPYLG--MEGRVERIWITEI---AADGIHLVGHTKGYVQVLVPSTGNM 453
R L ++ + EG V + E ++D VG+T Y++V+ P+ M
Sbjct: 355 RVHRLIALSDQLAKEYASQYEGEVLEVIPEESFKESSDSSLFVGYTDNYLKVVFPAAEEM 414
Query: 454 LGTSALVKITSVGRWSVFGEVIKILNQVDD 483
+G VKIT G G+ ++ L+++++
Sbjct: 415 VGQIVKVKITKAGYPYNEGQFVRALDELNE 444
>gi|206900889|ref|YP_002250798.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
thermophilum H-6-12]
gi|229890516|sp|B5YE40.1|MIAB_DICT6 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206739992|gb|ACI19050.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dictyoglomus thermophilum
H-6-12]
Length = 440
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 227/443 (51%), Gaps = 39/443 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------I 111
Y+ T+GC N+SDSE +AG L GY ++ EEADI L+NT S + +
Sbjct: 5 YIITYGCQMNKSDSEKVAGILENLGYTPSEKMEEADIILLNTCSVRERAEEKVFGKLGEL 64
Query: 112 AKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
K K + L++ GC+ Q ++ +++ V V G + + +++E +L G + ++
Sbjct: 65 RKLKKRNQNLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKILE-SLDGKK-KV 122
Query: 167 LHRKKLPA---LDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + +P+ +D ++R NKF +PI GC CTYC + RG S E ++
Sbjct: 123 VLAEDIPSPQDVDFRVIKRENKFQAWIPIIYGCNNFCTYCIVPYLRGREKSRDPEEIIRE 182
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
V + + GV EV L ++ +YG+D+G N +A+L + + RI F+
Sbjct: 183 VEYLASQGVVEVTLLGQNVDSYGKDLG-------NVDLADLLVEIHRIPRIKRIR--FLT 233
Query: 283 EHLKEIAE-----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
H +++++ V HP V H+P+Q+GSD +L M R YT S+++ +++ + +P
Sbjct: 234 SHPRDVSDKLIRVVATHPKVCPHWHLPLQAGSDRILRRMGRGYTYSEYKALIEKIRAEIP 293
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVV 396
+TDII GFPGE +EDF T ++E KF V+++ + RPGTPAA + +P
Sbjct: 294 KASFSTDIIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAANYEDLIPYETK 353
Query: 397 KKRSRELTSVFEA--FTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNM 453
K+ EL ++ + L G+ E + E+ + L G T+ Y V + +
Sbjct: 354 KRWFDELENLQRKIIYEKNLSRVGKEEIVLAEEVNPKNPRELSGRTENYRLVFFEAEKEL 413
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G LVKIT WS+ GEVI+
Sbjct: 414 IGKFLLVKITEARLWSLKGEVIR 436
>gi|229098781|ref|ZP_04229719.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|423440940|ref|ZP_17417846.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|423448892|ref|ZP_17425771.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|423464005|ref|ZP_17440773.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|423533368|ref|ZP_17509786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
gi|423541377|ref|ZP_17517768.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|228684625|gb|EEL38565.1| hypothetical protein bcere0020_40070 [Bacillus cereus Rock3-29]
gi|401129486|gb|EJQ37169.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5O-1]
gi|401172565|gb|EJQ79786.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB4-10]
gi|402417601|gb|EJV49901.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG4X2-1]
gi|402420272|gb|EJV52543.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6O-1]
gi|402463587|gb|EJV95287.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB2-9]
Length = 450
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 215/431 (49%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASRFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVG 466
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|229075984|ref|ZP_04208957.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|229104941|ref|ZP_04235597.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|229117807|ref|ZP_04247171.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|423377832|ref|ZP_17355116.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
gi|423547613|ref|ZP_17523971.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|423622602|ref|ZP_17598380.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|228665604|gb|EEL21082.1| hypothetical protein bcere0017_40780 [Bacillus cereus Rock1-3]
gi|228678435|gb|EEL32656.1| hypothetical protein bcere0019_40790 [Bacillus cereus Rock3-28]
gi|228707096|gb|EEL59296.1| hypothetical protein bcere0024_40230 [Bacillus cereus Rock4-18]
gi|401179334|gb|EJQ86507.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
HuB5-5]
gi|401260722|gb|EJR66890.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD148]
gi|401636098|gb|EJS53852.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1O-2]
Length = 450
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 215/431 (49%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVG 466
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|307354819|ref|YP_003895870.1| MiaB-like tRNA modifying protein [Methanoplanus petrolearius DSM
11571]
gi|307158052|gb|ADN37432.1| MiaB-like tRNA modifying enzyme [Methanoplanus petrolearius DSM
11571]
Length = 404
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 219/434 (50%), Gaps = 58/434 (13%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I+++T+GC+ N +D+E + G ++ E A+ +INT + AM +IA+
Sbjct: 9 IHLETYGCTFNFADTEKIVRVAEKQGCSIVPPGE-AEAVIINTCTVVAQTERAMLRVIAE 67
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVS----IVGVQQIDRVVEVVEETLKGHEVRLLHR 169
K + V GC+ DL + GV ++ + ++R E + + G
Sbjct: 68 FPD--KEIYVTGCMAVVQPDL--IYGVRPDARLILPEDLNRCPETIGSLVDGS------- 116
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
I+ GC+ C YC T+ ARG L S+ + ++ + +++
Sbjct: 117 ----------------TGIVQTARGCVSRCAYCITRSARGRLRSFPEDKIIEEIERLVSA 160
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
G E+ L+ +D AYG D G +LP LLN I + +G M+R+GM NP + E++
Sbjct: 161 GAVEIQLTGQDLSAYGMDTGSSLPDLLNRINS---LEGEFMVRVGMMNPSTAIPLTDELS 217
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
+ ++SF H+PVQSGSD VLS M R Y + DFR +V L + PG++I+TD I G+
Sbjct: 218 DAFLGEKIFSFAHLPVQSGSDKVLSDMKRGYQVQDFRNLVAELRKKDPGIRISTDFIVGY 277
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT----- 404
P ET+EDF +T+ L++E + +V+I++F R GT AA++K +P + K+RSR LT
Sbjct: 278 PTETEEDFLKTLALLEEIRPTKVNITRFSAREGTDAAKLKDIPDWIKKERSRALTIAANR 337
Query: 405 ---SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
SV E+F G+ + +TE G + K Y +++ + GT V+
Sbjct: 338 LYDSVNESFI------GKDLDVIVTERKRAG-SCIARDKSYNNIVIEEELDA-GTRCRVR 389
Query: 462 ITSVGRWSVFGEVI 475
I S R + GE I
Sbjct: 390 IVSHRRHYLIGERI 403
>gi|52080307|ref|YP_079098.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319645912|ref|ZP_08000142.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|404489194|ref|YP_006713300.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|423682247|ref|ZP_17657086.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
gi|81385531|sp|Q65JE5.1|MIAB_BACLD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52003518|gb|AAU23460.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348185|gb|AAU40819.1| tRNA methylthiotransferase YmcB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317391662|gb|EFV72459.1| hypothetical protein HMPREF1012_01176 [Bacillus sp. BT1B_CT2]
gi|383439021|gb|EID46796.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
licheniformis WX-02]
Length = 509
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 219/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NT ++A + + I
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 114 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKDNPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRTGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS VL M R+Y + +V + + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSDVLKLMARKYDRERYLELVAKIKKAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L V + EG+V + + E + L G+T+ V +G
Sbjct: 425 QRLNEVVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNFKGPKEAIGQL 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VNVKIHQAKTWSLDGEMV 502
>gi|302391395|ref|YP_003827215.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
gi|302203472|gb|ADL12150.1| MiaB-like tRNA modifying enzyme [Acetohalobium arabaticum DSM 5501]
Length = 436
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 217/445 (48%), Gaps = 38/445 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDT 109
E + T GC NQ D+E M +A Y L D S+EAD+++INT +S
Sbjct: 2 ERVAFYTLGCKVNQYDTEAMINLFTAADYELVDFSDEADVYVINTCTVTHQGARKSRKMV 61
Query: 110 LIAKCKSAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 167
A ++ + + V GC PQ S ++ E++GV IVG + R+V++VE+ + E
Sbjct: 62 RRANRRNPQAIVAVVGCYPQVSPAEILEIDGVDLIVGTEGQSRIVDLVEQAKRADESLNF 121
Query: 168 HRKKLPALDLPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R A D ++ +KF E L + GC C YC + RG + S +E V
Sbjct: 122 VRDISEAEDFEEIPLDKFEERTRASLKVQDGCDNFCAYCIIPYTRGSVRSRRIEDAVAEA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+ + A G KE+ L+ GAYG+++ ++L LL ++ G +R+ +
Sbjct: 182 KRLAASGFKEIVLTGIHLGAYGKEVEEEIDLVTLLKELI---EISGLERIRLSSIEATEV 238
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
L ++ C + LH+P+Q+GSD +L+AMNR+YT+ + V + +P + +
Sbjct: 239 TSDLIDLIATEEKLCRH--LHLPLQNGSDKILAAMNRDYTVQQYADKVAEIRSNIPQIAL 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA--------RMKKVPS 393
TD++ GFPGETDEDF T LI+E F +H+ ++ R GT AA ++KK S
Sbjct: 297 TTDVMVGFPGETDEDFEATYQLIEELAFSDLHVFKYSKREGTAAAKFSNQVHSKLKKERS 356
Query: 394 AVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTG 451
A ++K + +L S + +LG E V + E DG L G T Y++V++
Sbjct: 357 AKLRKLADDLASQYR--KKFLGAELDV----LIEEERDGSTDLLTGLTDNYLRVMIDDQD 410
Query: 452 NMLGTSALVKITSVGRWSVFGEVIK 476
V++ + + G++ K
Sbjct: 411 QYRKELIEVELNKLQEDYLIGKITK 435
>gi|448311468|ref|ZP_21501229.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
gi|445604799|gb|ELY58741.1| MiaB-like tRNA modifying protein [Natronolimnobius innermongolicus
JCM 12255]
Length = 417
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 137/432 (31%), Positives = 220/432 (50%), Gaps = 37/432 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
A L V GC + QG +E + G Q+ EV E G E
Sbjct: 65 SEATADLYVTGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAD 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVF 228
Query: 293 R-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
+ +Y FLH PVQSGSD VL M R++ +S++ V+D + + ++TD I GFP
Sbjct: 229 AAYDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIDAFDDALEYWTLSTDFIVGFPT 288
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 406
ETD D +Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++ V
Sbjct: 289 ETDRDHDQSMALLRETRPEKVNVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREIV 348
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKIT 463
EA+ +G E R + + + + AD + Y Q++V + G G +++T
Sbjct: 349 GEAYEAMVG-ERRDDCLVVEDGTADSVKC--RDSAYRQLIVQNASEHGLEPGDFVDLEVT 405
Query: 464 SVGRWSVFGEVI 475
+ FGE +
Sbjct: 406 AHETMYAFGEPV 417
>gi|423483893|ref|ZP_17460583.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
gi|401141444|gb|EJQ48999.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-2]
Length = 450
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKEYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|121533678|ref|ZP_01665505.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121307669|gb|EAX48584.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 451
Score = 186 bits (473), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 222/437 (50%), Gaps = 30/437 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
++ T+GC N++DSE +AGQL GY+ TD E+AD+ LINT +SA + K
Sbjct: 19 HIITYGCQMNENDSERLAGQLRGLGYSSTDQIEQADLILINTCCVRESAEKKIYGKIGEL 78
Query: 118 KKP--------LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--V 164
K+ + V GC+ Q RD + V +V G + ++ ++++E + + +
Sbjct: 79 KRLKTVNPNLLIGVTGCLSQKDRDKIFTKAPHVDLVMGTHNVHQLTDLIKEISQSRDRVL 138
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ + + A D+P VR+++ +PI GC CTYC + RG S + ++ VR
Sbjct: 139 AVWDQAERLAPDVPTVRKSQVSAWVPIMYGCNNFCTYCIVPYVRGRERSRPLADILAEVR 198
Query: 225 TVIADGVKEVWLSSEDTGAYGRD--IGVNLPILLNAIVAELPPDGSTMLRIG-MTNPPFI 281
+ +G KE+ L ++ +YG+D ++ LL A+ T+ RI MT+ P
Sbjct: 199 QLGTEGFKEITLLGQNVNSYGKDGEETIDFADLLAAV-----DKVETIARIRYMTSHPRD 253
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ + K IA + + H+PVQSGSD VL MNR YT +R +V+ + +P I
Sbjct: 254 M-NAKVIAVIKHGQRICEHFHLPVQSGSDIVLQRMNRGYTTEYYRKLVEKIRSEIPHASI 312
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII GFPGETDE F QT++ ++ +F + + PR GTPAA M +VP A+ K+R
Sbjct: 313 TTDIIVGFPGETDELFMQTLDFVRSIRFDAAYTFLYSPRSGTPAATMPDQVPLAIKKQRL 372
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTS 457
++L +V + + + G+ + + + D ++G T+ VL +G
Sbjct: 373 QQLMAVQNEISLAINEALIGQTVEVLVEGPSKNDPDKMMGRTRTNKIVLWNRGKEQIGQL 432
Query: 458 ALVKITSVGRWSVFGEV 474
V++ W + GEV
Sbjct: 433 ISVRVLKAQTWLLKGEV 449
>gi|373494777|ref|ZP_09585376.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
gi|371967821|gb|EHO85289.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Eubacterium infirmum
F0142]
Length = 438
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 219/442 (49%), Gaps = 29/442 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------L 110
+ T ++ TFGC N+ DSE + G L+ G++ ++A I +INT S D
Sbjct: 2 SRTFHITTFGCQMNEHDSEIIDGLLTERGFSSVKERKDASIVIINTCSVRDNADKRFFGT 61
Query: 111 IAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLK 160
+ + K K+ + V GC+ Q R + ++ I G I + E++E+
Sbjct: 62 LGQLKKRKESDPSFIVCVCGCMMQQQRVVDIIKAKYPWVDVIFGTNSIHHIPELIEKVSM 121
Query: 161 GHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E V ++ + LP R ++ I GC CTYC + RG S E+
Sbjct: 122 EKEKLVDIIENTEEIVEGLPAKRLFNHKALVNIMFGCNNFCTYCIVPYTRGREKSRRPEA 181
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
++ VR ++ DGVKE+ L ++ +Y D G + LL ++ E+ DG +R +NP
Sbjct: 182 ILAEVRELVEDGVKEIMLLGQNVNSYDGD-GTSFAELL-KMINEI--DGLERIRFMTSNP 237
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + L E V C LH+P+QSGS+ VL MNR+YT D+ +++ L VP
Sbjct: 238 KDLSDELIEAFTVCDKLC--HNLHLPIQSGSNRVLKRMNRKYTREDYLKLIEKLRIRVPD 295
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ ++TDII GFPGETD+DF +T++L+KE ++ + R GTPA + +V +
Sbjct: 296 ITLSTDIIVGFPGETDDDFEETLSLVKEVEYDSAFTFIYSIRKGTPAEKFDNQVEESEKH 355
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNML 454
+R L S + + R+E+I + ++ + + L G T G+ V +M+
Sbjct: 356 RRFDLLVSTVNEISEKKNKVYQDRIEKILVDGVSKNNKLMLTGRTDGFKLVNFAGKKDMI 415
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G+ V+IT V +S+ GEVI+
Sbjct: 416 GSLVDVRITDVKTFSLLGEVIE 437
>gi|407706837|ref|YP_006830422.1| Holliday junction DNA helicase subunit RuvA [Bacillus thuringiensis
MC28]
gi|407384522|gb|AFU15023.1| RNA modification enzyme, MiaB family [Bacillus thuringiensis MC28]
Length = 450
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 214/431 (49%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGAEELIG 416
Query: 456 TSALVKITSVG 466
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|339444956|ref|YP_004710960.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
gi|338904708|dbj|BAK44559.1| hypothetical protein EGYY_14080 [Eggerthella sp. YY7918]
Length = 453
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 211/446 (47%), Gaps = 34/446 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAMDTL----IA 112
T ++TFGC N+ DSE +AG G D EEADI T + A DT +A
Sbjct: 9 TFCIRTFGCQMNKHDSERIAGMFEGLGALQVDTIEEADIVAFMTCCVREAADTRLYGQVA 68
Query: 113 KCKSA---------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
K+ K+ + V GC+ Q G + KEL+ + +V G + + +V ++
Sbjct: 69 SLKNVPLRTDSPLRKRIVAVGGCIGQRDGEKLTKELDHLDVVFGTHNLGSLPHLVMAAIE 128
Query: 161 --GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
GH V +L +LP R + + LPI +GC C+YC + RG S +E
Sbjct: 129 EGGHHVEVLDAASSFPTELPTSREHDWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLED 188
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V +A GVKE+ L ++ +YGRD+ P + A L G LR ++P
Sbjct: 189 IVAEAERYVAAGVKEITLLGQNVNSYGRDL-YGAPRFAQVLDA-LDGTGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + LR + LH+PVQSGSDAVL+AMNR YT + + +V L ++VP
Sbjct: 247 KDLTDEVIGKFATLR--SLMPALHLPVQSGSDAVLAAMNRRYTRAHYLELVRKLRDVVPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 397
+ ++TDII GFPGET +DF T L+ E + QV + R GTPAA M+ P ++
Sbjct: 305 IALSTDIIVGFPGETAKDFENTYRLVDEVGYHQVFTFIYSKREGTPAASMEDTTPRETIQ 364
Query: 398 KRSRELTSVFE--AFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVP-----S 449
+R L + + AF G + + + + D L G + V P +
Sbjct: 365 ERFDRLVDLVQARAFEANQADVGAIVEVLVEGASKRDAGLLAGKSPKNQTVHAPVPVGKT 424
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
+ GT V+I W + GEV+
Sbjct: 425 ASELAGTIVPVRINEAKTWYLAGEVV 450
>gi|423615348|ref|ZP_17591182.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
gi|401261027|gb|EJR67194.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD115]
Length = 450
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 214/431 (49%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ DG LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--DGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GT AARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTAAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E DG VG+T Y++++ + +G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKDGDREGLYVGYTDNYLKIVFEGSEEFIG 416
Query: 456 TSALVKITSVG 466
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|118479478|ref|YP_896629.1| 2-methylthioadenine synthetase [Bacillus thuringiensis str. Al
Hakam]
gi|229186550|ref|ZP_04313711.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|376268207|ref|YP_005120919.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
gi|118418703|gb|ABK87122.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|228596809|gb|EEK54468.1| hypothetical protein bcere0004_40930 [Bacillus cereus BGSC 6E1]
gi|364514007|gb|AEW57406.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Bacillus cereus F837/76]
Length = 450
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 139/431 (32%), Positives = 215/431 (49%), Gaps = 30/431 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVG 466
VKIT G
Sbjct: 417 KLVKVKITKAG 427
>gi|152976138|ref|YP_001375655.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cytotoxicus NVH 391-98]
gi|229890423|sp|A7GRA2.1|MIAB_BACCN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|152024890|gb|ABS22660.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cytotoxicus NVH
391-98]
Length = 509
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 223/446 (50%), Gaps = 40/446 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG + GY T +E+AD+ L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFTTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 113 ----KCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 161
K K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LKPLKQKNPDLLIGVCGCMSQEESVVNKIMQKHQHVDMVFGTHNIHRLPYILKDAMFSKA 187
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EVRHLAANGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL E+ ++ H +H+PVQSGS +L M R+YT + +V + + +P
Sbjct: 307 DDHLIEVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYTREQYLELVRKIKKTIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ + TDII GFP ETDE F +T++L +E +F + PR GTPAA+MK +P V
Sbjct: 361 NVVLTTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMKDNIPMEVK 420
Query: 397 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPST 450
K+R + L + F+ + + I E+ DG L G+T+ V +
Sbjct: 421 KERLQRLNELVNEFS---AKKNKKYEGQIVEVLVDGESKNNPDVLAGYTRTNKLVNFVAP 477
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VKIT WS+ GE+++
Sbjct: 478 KSVIGQLVKVKITEAKTWSLNGELVE 503
>gi|47567875|ref|ZP_00238583.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49478605|ref|YP_038365.1| hypothetical protein BT9727_4047 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141194|ref|YP_085636.1| hypothetical protein BCZK4057 [Bacillus cereus E33L]
gi|167634590|ref|ZP_02392910.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170687423|ref|ZP_02878640.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|196034518|ref|ZP_03101927.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196039288|ref|ZP_03106594.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225866291|ref|YP_002751669.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228929354|ref|ZP_04092378.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935630|ref|ZP_04098444.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228948023|ref|ZP_04110308.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228987561|ref|ZP_04147679.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229031959|ref|ZP_04187945.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|229123849|ref|ZP_04253042.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|229157924|ref|ZP_04285997.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|254684067|ref|ZP_05147927.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254721901|ref|ZP_05183690.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. A1055]
gi|254741453|ref|ZP_05199140.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Kruger B]
gi|300118700|ref|ZP_07056428.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|421638385|ref|ZP_16078981.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
gi|423400843|ref|ZP_17378016.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|423478452|ref|ZP_17455167.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|47555552|gb|EAL13895.1| MiaB-like tRNA modifying enzyme [Bacillus cereus G9241]
gi|49330161|gb|AAT60807.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974663|gb|AAU16213.1| conserved hypothetical protein [Bacillus cereus E33L]
gi|167530042|gb|EDR92777.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170668618|gb|EDT19364.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|195993060|gb|EDX57019.1| RNA modification enzyme, MiaB family [Bacillus cereus W]
gi|196029915|gb|EDX68516.1| RNA modification enzyme, MiaB family [Bacillus cereus NVH0597-99]
gi|225790885|gb|ACO31102.1| RNA modification enzyme, MiaB family [Bacillus cereus 03BB102]
gi|228625532|gb|EEK82286.1| hypothetical protein bcere0010_41050 [Bacillus cereus ATCC 4342]
gi|228659563|gb|EEL15210.1| hypothetical protein bcere0016_41350 [Bacillus cereus 95/8201]
gi|228729349|gb|EEL80340.1| hypothetical protein bcere0028_40050 [Bacillus cereus AH1271]
gi|228772159|gb|EEM20607.1| hypothetical protein bthur0001_42320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228811609|gb|EEM57945.1| hypothetical protein bthur0007_41500 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228823990|gb|EEM69808.1| hypothetical protein bthur0009_40760 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830305|gb|EEM75918.1| hypothetical protein bthur0010_40400 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|298723949|gb|EFI64663.1| RNA modification enzyme, MiaB family protein [Bacillus cereus SJ1]
gi|401653833|gb|EJS71376.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG2X1-2]
gi|402428614|gb|EJV60711.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG6X1-1]
gi|403394811|gb|EJY92051.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. BF1]
Length = 450
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|228960578|ref|ZP_04122226.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296504804|ref|YP_003666504.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|423585210|ref|ZP_17561297.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|423631033|ref|ZP_17606780.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|423640609|ref|ZP_17616227.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|423650175|ref|ZP_17625745.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|423657266|ref|ZP_17632565.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
gi|228799091|gb|EEM46060.1| hypothetical protein bthur0005_40430 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296325856|gb|ADH08784.1| Fe-S oxidoreductase [Bacillus thuringiensis BMB171]
gi|401233853|gb|EJR40339.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD045]
gi|401264400|gb|EJR70512.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD154]
gi|401279670|gb|EJR85592.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD166]
gi|401282593|gb|EJR88492.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD169]
gi|401290009|gb|EJR95713.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
VD200]
Length = 450
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|89100706|ref|ZP_01173562.1| YmcB [Bacillus sp. NRRL B-14911]
gi|89084581|gb|EAR63726.1| YmcB [Bacillus sp. NRRL B-14911]
Length = 514
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 218/447 (48%), Gaps = 38/447 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++TFGC N+ D+E MAG + GY TD E+A++ L+NT ++A + + +
Sbjct: 71 FYIRTFGCQMNEHDTEVMAGIFLSLGYEPTDTVEDANVILLNTCAIRENAENKVFGELGH 130
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K KK L V GC+ Q ++ LK + V ++ G I R+ +++E E
Sbjct: 131 LKHLKKERPDLLLGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G +E+ L ++ AYG+D +L L ++ E+ +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDF-TDLQYGLGDLMDEIRKIDIPRIRFTTSHPRDF 309
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL E+ +L H +H+PVQSGS VL M R+YT + +V + +P
Sbjct: 310 DDHLIEVLAKGGNLLEH------IHLPVQSGSTDVLKIMARKYTREQYLELVRKIRAAIP 363
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
TDII G+P ETDE F +T++L KE + + + PR GTPAA+MK VP V
Sbjct: 364 NATFTTDIIVGYPNETDEQFEETLSLYKEVGYESAYTFIYSPREGTPAAKMKDNVPMEVK 423
Query: 397 KKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 451
K+R + L ++ EA Y G VE + E + L G+T+ V
Sbjct: 424 KERLQRLNALVNEMSAEAMKKYHGQ--TVEVLVEGESKNNPEVLAGYTRKNKLVNFKGPK 481
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKIL 478
+ +G VKIT WS+ GE+++ L
Sbjct: 482 SAIGKIVSVKITDAKTWSLNGEMVEEL 508
>gi|229174985|ref|ZP_04302504.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
gi|228608446|gb|EEK65749.1| hypothetical protein bcere0006_40680 [Bacillus cereus MM3]
Length = 450
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|15605821|ref|NP_213198.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Aquifex
aeolicus VF5]
gi|6226354|sp|O66638.1|MIAB_AQUAE RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2982992|gb|AAC06605.1| hypothetical protein aq_284 [Aquifex aeolicus VF5]
Length = 440
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 234/446 (52%), Gaps = 31/446 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDT 109
++ ++KTFGC N +DSE + G L GY TDN EEAD+ ++NT Q +
Sbjct: 2 SKKFFIKTFGCQMNFNDSERIRGLLKTIGYEQTDNWEEADLIILNTCTIREKPDQKVLSH 61
Query: 110 L----IAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGH 162
L K K+ K + VAGC+ Q G +K+ + I+ + ++ E++ + G+
Sbjct: 62 LGEYKKIKEKNPKALIAVAGCLAQRTGWELVKKAPVIDIMFSSFNMHQLPELINQAQAGY 121
Query: 163 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
+ + L + + + P R NK+ + I GC CTYC RG S + S
Sbjct: 122 KAIAILDELPQDEDKIWEYPVERDNKYCAYVTIIKGCDKNCTYCVVPRTRGKERSRALHS 181
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
++ V+ ++ DGV+E+ L ++ A+G+D PI + ++ ++ DG +R +
Sbjct: 182 ILDEVKRLVDDGVREIHLLGQNVTAWGKDF--EKPIPFSELLYQVSKIDGVERIRFTTGH 239
Query: 278 PPFILEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + + + E +A++ P V + LH+P Q+GS+ +L+ M+R YT ++ ++ L E V
Sbjct: 240 PRDLTDDIIEAMADI---PQVCNALHLPFQAGSNRILALMDRGYTKEEYLEKIEKLKEKV 296
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
+ ++TD+I GFP ET+EDF T++++K+ +F QV +F PRPGTPAA M+ ++P V
Sbjct: 297 KDIAMSTDVIVGFPTETEEDFEHTLDVLKKVRFEQVFSFKFSPRPGTPAAEMEGQIPDDV 356
Query: 396 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
+R R L + ++ + EG V+ + + E +G L+G T ++
Sbjct: 357 KTERMRRLLELQKSILSEIAKKYEGTVQEVLVEE-EKNG-ELIGRTTTNKWASFKGDPSL 414
Query: 454 LGTSALVKITSVGRWSVFGEVIKILN 479
LG +K+ +S+ GE+++++
Sbjct: 415 LGKIVKIKVIKSSPFSLEGELLEVIK 440
>gi|229019534|ref|ZP_04176351.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|229025776|ref|ZP_04182175.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|423389373|ref|ZP_17366599.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
gi|423417765|ref|ZP_17394854.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|228735484|gb|EEL86080.1| hypothetical protein bcere0029_40670 [Bacillus cereus AH1272]
gi|228741790|gb|EEL91973.1| hypothetical protein bcere0030_40370 [Bacillus cereus AH1273]
gi|401106936|gb|EJQ14893.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG3X2-1]
gi|401641464|gb|EJS59181.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG1X1-3]
Length = 450
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ +++D+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKSDVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + +++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEDLIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|415885569|ref|ZP_11547497.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
gi|387591238|gb|EIJ83557.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
MGA3]
Length = 450
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 137/450 (30%), Positives = 225/450 (50%), Gaps = 32/450 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC----- 114
T+ T GC N ++E + GY D AD+++INT + +T K
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQQGYERVDFEAIADVYVINTCTVTNTGDKKSPQVIR 62
Query: 115 ----KSAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K+ + V GC Q S ++ + GV IV G Q +++E +E+ K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEILAIPGVDIVVGTQDRAKMLEYIEKYKKERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPQEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N +LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRDLEAQV--KGLKRLRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + + LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ +
Sbjct: 240 D---EVIEVLDKSKVIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLNRLKEALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMADQIDEEVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRV-ERIWITEIAAD---GIHLVGHTKGYVQVLVPSTGNML 454
L ++ + EG V E I D G++ G+T Y++V+ P+T M+
Sbjct: 357 HRLIALSDQLAKEYASQFEGEVLEVIPEERFKGDPESGLY-EGYTDNYLKVVFPATEEMI 415
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDK 484
G VKIT G G+ +++L++ +++
Sbjct: 416 GKIVKVKITKAGYPYNEGQFVRVLDEANEQ 445
>gi|228910147|ref|ZP_04073966.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
gi|228849430|gb|EEM94265.1| hypothetical protein bthur0013_42950 [Bacillus thuringiensis IBL
200]
Length = 450
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 220/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASAFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKSGYPYNEAQFVRVL 439
>gi|222480620|ref|YP_002566857.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
gi|222453522|gb|ACM57787.1| MiaB-like tRNA modifying enzyme [Halorubrum lacusprofundi ATCC
49239]
Length = 434
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 215/443 (48%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ + LVV GC+ D GV +I EV L G E +
Sbjct: 63 ELEDVTAELVVTGCMALAQGDAFREAGVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S TVE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTVEENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AEV
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELAEV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP
Sbjct: 228 FADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
ET+ D ++++L+ E + ++++++F RPGT AA MK + + K+RS+ ++ +
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSELKMEV 347
Query: 411 T--PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSV 465
Y M G + + E G + Y Q++V + G +G V++T
Sbjct: 348 VGDAYESMVGETFEVLVVE-EGTGDSVKCRDGAYRQIIVQNAAERGVAVGDFLEVEVTGH 406
Query: 466 GRWSVFGEVIKILNQVDDKIASN 488
FGE VD+ A +
Sbjct: 407 NTVYAFGEPTDGGRPVDEDPAES 429
>gi|387929785|ref|ZP_10132462.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
PB1]
gi|387586603|gb|EIJ78927.1| ribosomal protein S12 methylthiotransferase [Bacillus methanolicus
PB1]
Length = 450
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 134/450 (29%), Positives = 228/450 (50%), Gaps = 32/450 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY D AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQQGYERVDFEAIADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV IV G Q +++E +E+ K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEILAIPGVDIVVGTQDRVKMLEHIEQYKKERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL LL + A++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAKLLRDLEAQVK--GLKRLRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + + LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ +
Sbjct: 240 D---EVIEVLDKSEVIVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERINRLKEALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N +KE+KF ++H+ + R GTPAARM+ ++ V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFVKEHKFSELHVFPYSKRTGTPAARMENQIDEEVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
L ++ + EG+V + E G++ G+T Y++++ P++ +M+
Sbjct: 357 HRLIALSDQLAKEYASQFEGQVLEVIPEERYKEAPESGLY-EGYTDNYLKLVFPASEDMV 415
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDK 484
G VKIT G G+ +K+L+++ ++
Sbjct: 416 GKIVKVKITKAGYPYNEGQFVKVLDEIHEQ 445
>gi|443326848|ref|ZP_21055489.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
gi|442793564|gb|ELS03010.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Xenococcus sp. PCC 7305]
Length = 446
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 216/441 (48%), Gaps = 36/441 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA------- 117
TFGC N++DSE MAG L + T+ +AD+ L NT + D K S
Sbjct: 12 TFGCQMNKADSERMAGILEEMDFQWTEEPNDADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 118 --KKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 169
+KP LVVAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHQKPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 170 KKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
+ D+ K RR+ K + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSKVTAWVNIIYGCNERCSYCVVPNVRGTEQSRTPEAIKSEMSDIGK 190
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLP------ILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
G KE+ L ++ AYGRD+ + P L + + + +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTPEGRHQHTLTDLLYYVHDVETVDRIRFATSHPRYFT 250
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E L + + L P V H+P QSG + +L AM R YT +R ++D + +P I+
Sbjct: 251 ERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHEKYRRIIDKIRHYMPDAAIS 308
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK----K 398
D I GFPGET+E FN T+ L+++ F ++ + + PRPGTPAA + S VK +
Sbjct: 309 ADAIVGFPGETEEQFNNTLKLVEDIGFDLINTAAYSPRPGTPAALWEDQLSEEVKSDRLQ 368
Query: 399 RSREL--TSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVP-STGNML 454
R L T+ E YL RVE + + + D ++G T+G P N+L
Sbjct: 369 RLNHLVATTAAERSQRYL---NRVEEVLVEAQNTKDTAQVMGRTRGNRLTFFPGKIENLL 425
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G + VKIT +S+ GE+I
Sbjct: 426 GKTVKVKITEYRAFSLTGEMI 446
>gi|448732069|ref|ZP_21714352.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
gi|445805347|gb|EMA55570.1| MiaB-like tRNA modifying enzyme [Halococcus salifodinae DSM 8989]
Length = 414
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 139/432 (32%), Positives = 220/432 (50%), Gaps = 36/432 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-------MDTLIA 112
+ +++T+GC+ N+ +S + +L G+ D + AD+ ++NT + M +
Sbjct: 3 SYHLETYGCTANRGESRAIERRLRDGGHHPVDGPKAADVAILNTCTVVETTETNMLSRAR 62
Query: 113 KCKSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ +S LVV GC + QG + +L+ ++ G ++ VV L G E
Sbjct: 63 ELESETADLVVTGCMALAQGE-EFADLD-ATVCGWDEVPEVV------LNG-ECPTATPG 113
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TKHA G + S VE V + R ++ G
Sbjct: 114 TEPILD-------GKVGILPIARGCMSDCSYCITKHATGKIDSPPVEENVEKARALVHAG 166
Query: 231 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G L LL+ I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDDGERKLHELLDRICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 290 EVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+V + +Y+FLH PVQSGSD VL M R++ + +FR VV+T + + +ATD I G
Sbjct: 224 DVFAANEKLYNFLHAPVQSGSDDVLGEMRRQHQVREFREVVETFDDRLDHWTLATDFITG 283
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ETD D ++++L++E + ++++++F RPGT AA MK + K+RS +T +
Sbjct: 284 FPTETDADHEESMDLLRETQPERINVTRFSKRPGTDAAEMKGLGGTKKKERSSAMTDLKM 343
Query: 409 AF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKIT 463
Y M G + + E G + + + Y QV++ P G G V+IT
Sbjct: 344 DVVGAAYESMVGERHEVLVVEPGT-GESVKCYDEAYRQVIIQNAPEHGVAPGDLLTVEIT 402
Query: 464 SVGRWSVFGEVI 475
FGE +
Sbjct: 403 GQNTVYAFGEPV 414
>gi|403252571|ref|ZP_10918880.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
gi|402812061|gb|EJX26541.1| hypothetical protein EMP_02309 [Thermotoga sp. EMP]
Length = 434
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 140/435 (32%), Positives = 225/435 (51%), Gaps = 41/435 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+ + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60
Query: 112 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 168
++ K +++ GC Q S D K L I+G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMILGIDEKKHIVDHIN-SLNGKQQVVVS 119
Query: 169 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 224
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ G KE+ ++ + G YG+D+G +L LL IV E+P G +R+ N + +
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND- 233
Query: 285 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I T
Sbjct: 234 --EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSITT 291
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAV 395
DII GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V
Sbjct: 292 DIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDV 351
Query: 396 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
+K+++++++ + +G E +V W G+ L G+ + YV+ GN +G
Sbjct: 352 LKEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGV-LSGYDEYYVK--HEFVGNRVG 403
Query: 456 TSALVKITSVGRWSV 470
V++ S+ V
Sbjct: 404 EFHSVRVKSLSEEGV 418
>gi|407979369|ref|ZP_11160185.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
gi|407413976|gb|EKF35647.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
HYC-10]
Length = 508
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 220/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NT ++A + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K +KP L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS AVL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAVLKLMARKYDRERYLELVRKIKEAMPNASL 363
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMKDNVPMRVKKERL 423
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+ + + E + L G+T V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 458 ALVKITSVGRWSVFGEVI 475
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|210623865|ref|ZP_03294100.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
gi|210153291|gb|EEA84297.1| hypothetical protein CLOHIR_02051 [Clostridium hiranonis DSM 13275]
Length = 432
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 213/438 (48%), Gaps = 40/438 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTLIAKCK 115
T GC NQ ++E M GY + E AD+++INT +S K K
Sbjct: 8 TLGCKVNQYETEAMIELFEHAGYEHVQSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 116 SAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ + V GC Q ++ ++E V++V G +VE VE +V +
Sbjct: 68 NPNSVIAVVGCYSQVAPEEILDIEEVNLVMGTNDRRHIVEKVEAVTCNDKVSTVD----- 122
Query: 174 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
D+ KV+ + +EI + I GC CTYC +ARG + S ++++V V
Sbjct: 123 --DIMKVKEFEEIEITQTNGRTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDLDNIVEEV 180
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FIL 282
+ + + G KEV L+ +YG+DI LL+ I A DG +R P F
Sbjct: 181 KLLASKGYKEVVLTGIHVASYGKDIKDKEVKLLDVIKAVNEIDGIERIRTSSVEPILFTD 240
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E ++EI+++ + V H+ +QSG DA L MNR YT +++ +VD L E +P + I
Sbjct: 241 EFVEEISKMNK---VCPHFHLSLQSGCDATLDRMNRRYTTKEYKEIVDRLREKMPDVAIT 297
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
TD+I GFPGET+E+F QT +K+ + Q+HI ++ PR GTPAA+M ++ V RS
Sbjct: 298 TDVIVGFPGETNEEFKQTYEFLKDIELAQMHIFKYSPRKGTPAAKMDNQIDPQVKHMRSE 357
Query: 402 ELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+L S+ F+ F GR + E G + G T Y++V PS ++ G
Sbjct: 358 QLISLSKNNFDKFAERFI--GREMDVLFEETTKSG-NYEGLTMNYMRVEAPSEEDISGQI 414
Query: 458 ALVKITSVGRWSVFGEVI 475
VKIT + V G +I
Sbjct: 415 RKVKITGIKEDYVEGVLI 432
>gi|229071269|ref|ZP_04204493.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
gi|229081024|ref|ZP_04213537.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228702338|gb|EEL54811.1| hypothetical protein bcere0023_36650 [Bacillus cereus Rock4-2]
gi|228711890|gb|EEL63841.1| hypothetical protein bcere0025_34430 [Bacillus cereus F65185]
Length = 509
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 228/447 (51%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMQVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|206972613|ref|ZP_03233555.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|229180049|ref|ZP_04307393.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|229191897|ref|ZP_04318867.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|365159451|ref|ZP_09355631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|423412423|ref|ZP_17389543.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|423431792|ref|ZP_17408796.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
gi|206732426|gb|EDZ49606.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH1134]
gi|228591448|gb|EEK49297.1| hypothetical protein bcere0002_35540 [Bacillus cereus ATCC 10876]
gi|228603258|gb|EEK60735.1| hypothetical protein bcere0005_33950 [Bacillus cereus 172560W]
gi|363625163|gb|EHL76208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
sp. 7_6_55CFAA_CT2]
gi|401104491|gb|EJQ12468.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3O-2]
gi|401116548|gb|EJQ24386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4O-1]
Length = 509
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 228/447 (51%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|427414198|ref|ZP_18904388.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
gi|425714574|gb|EKU77577.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella ratti
ACS-216-V-Col6b]
Length = 436
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 219/438 (50%), Gaps = 30/438 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------I 111
Y+ T+GC N+SDSE +A QL GY T+N EEAD+ ++NT +T +
Sbjct: 5 YIFTYGCQMNESDSERLAHQLETAGYTNTENFEEADLIILNTCCVRETAEHKIYGRIGEL 64
Query: 112 AKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
K K L++A GC+ Q ++ K + IV G + + E+V E + H+ ++
Sbjct: 65 KHLKEKNKNLIIAITGCMAQKNQADMFKRAPHIDIVLGTHNLRHINEMVAEVQRTHKHQI 124
Query: 167 -LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ +L F +PI GC CTYC H RG S +E++V V+
Sbjct: 125 NIEMDNTVLHELEAKPMGTFSAWVPIMNGCNKFCTYCIVPHVRGREISRPIEAIVEDVKK 184
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ G KE+ L ++ +YG D G + L++A+ +P G +R MT+ P +
Sbjct: 185 LGQSGHKEITLLGQNVNSYGLDFKDGTHFGDLIDALDG-IP--GIERIRY-MTSHPQDMN 240
Query: 284 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
KE+ + L R V + LH+P+QSGS+ +L MNR YT+ ++ ++D E + G+ +
Sbjct: 241 --KEMIDALGRSTNVVTQLHLPIQSGSNRILQKMNRRYTVEHYKELIDYCREKIKGLTLT 298
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
TD+I GFPGET+EDF T+ L+K ++ + F R GTPAA M +VP V + R +
Sbjct: 299 TDLIVGFPGETEEDFQATLQLLKNIRYDMAYTFIFSKRSGTPAATMADQVPEEVKRVRLQ 358
Query: 402 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNM-LGTS 457
L V + L MEG+ I + + + + G T G +L P N+ +G +
Sbjct: 359 ALMDVQNEISLELNKEMEGKTYEIIVEGPSRNDEDVWFGRTSGNKMILFPKDENLKIGQT 418
Query: 458 ALVKITSVGRWSVFGEVI 475
++ W ++G ++
Sbjct: 419 VNARVDRAQTWILYGTIV 436
>gi|218234533|ref|YP_002368575.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus B4264]
gi|229890421|sp|B7HDP7.1|MIAB_BACC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218162490|gb|ACK62482.1| conserved hypothetical protein [Bacillus cereus B4264]
Length = 509
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 228/447 (51%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|423437227|ref|ZP_17414208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
gi|401120382|gb|EJQ28178.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X12-1]
Length = 509
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 228/447 (51%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|228954049|ref|ZP_04116078.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|423425910|ref|ZP_17402941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|423503549|ref|ZP_17480141.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449090716|ref|YP_007423157.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228805615|gb|EEM52205.1| hypothetical protein bthur0006_34210 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110657|gb|EJQ18556.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-2]
gi|402458903|gb|EJV90643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HD73]
gi|449024473|gb|AGE79636.1| hypothetical protein HD73_4058 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 509
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 228/447 (51%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P + +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDVVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|448339730|ref|ZP_21528742.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
gi|445619146|gb|ELY72691.1| MiaB-like tRNA modifying enzyme [Natrinema pallidum DSM 3751]
Length = 417
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 210/407 (51%), Gaps = 36/407 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
L + GC + QG +E + + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFDRADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L LL AI DG +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLEAIC---EIDGDFRVRVGMANPKGVHGIREELAAV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRDL 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 348 VADAYADMVG-EVREDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|423549948|ref|ZP_17526275.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
gi|401189564|gb|EJQ96614.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
ISP3191]
Length = 450
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 219/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKNYNLAGLLRDMETEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|392960658|ref|ZP_10326124.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|421054584|ref|ZP_15517551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|421057354|ref|ZP_15520198.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
gi|421065507|ref|ZP_15527248.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|421071447|ref|ZP_15532565.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392440686|gb|EIW18355.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pelosinus fermentans B4]
gi|392447074|gb|EIW24337.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A11]
gi|392454794|gb|EIW31613.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans DSM 17108]
gi|392458761|gb|EIW35255.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans A12]
gi|392463262|gb|EIW39232.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans B3]
Length = 458
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 225/467 (48%), Gaps = 46/467 (9%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC NQ DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEVKDSNIKYFTTY--TYGCQMNQHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINT----QSAMDTLIAKCKSAKK--------PLVVAGCVPQGSRD--LKELEGVS 141
A LINT +SA + K K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 142 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 198
I+G + ++VE+V+E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 199 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 256
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIHQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 257 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 315
A+ T+ R+ MT+ P + K I +L + H+PVQSGSDA+L
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVINTILNSKKICDHFHLPVQSGSDAILKM 292
Query: 316 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375
MNR YT +R +V + + +P + TDII GFPGE+DE F +T+ +KE +F +
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGESDELFQETLEFLKEIRFDASYTF 352
Query: 376 QFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA---- 430
+ R GTPAA M ++P V K+R ++L V + L + + +T I
Sbjct: 353 LYSKRSGTPAATMTDQIPLVVKKERLQKLMDVQNDIS--LEINQQFTDTVVTVIVEGPSQ 410
Query: 431 -DGIHLVGHTKGYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVI 475
D L+G T VL G +G A +KIT+ W + G++I
Sbjct: 411 RDENRLMGRTTTNKIVLWDKQGTEEVGQLANIKITTAQTWILKGKLI 457
>gi|228959979|ref|ZP_04121644.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|423628853|ref|ZP_17604602.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
gi|228799722|gb|EEM46674.1| hypothetical protein bthur0005_34510 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|401268398|gb|EJR74446.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD154]
Length = 509
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 227/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNSEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|427414218|ref|ZP_18904408.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
gi|425714594|gb|EKU77597.1| MiaB-like tRNA modifying enzyme [Veillonella ratti ACS-216-V-Col6b]
Length = 433
Score = 184 bits (468), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 136/408 (33%), Positives = 205/408 (50%), Gaps = 30/408 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+T+ T GC NQ D++ M G GY D E+ADI++INT S + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMRGLFIQSGYTPVDFDEKADIYVINTCSVTNMGERKSRQLI 61
Query: 112 AKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 163
K K + ++V GC Q + ++GV++V G RVVE+VE+ L+ E
Sbjct: 62 RKAKRTNEDAYIIVTGCYAQLAPEAIATIDGVNLVIGTNNRHRVVELVEQ-LESTEKQIS 120
Query: 164 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
VR ++ + + L +K + I GC CT+C + RG L S VE +V
Sbjct: 121 IVRNIMEQATFEEMPLYGNEIDKARAFMKIQEGCNNYCTFCIIPYTRGKLKSRRVEDIVK 180
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+ ++ G E+ L+ G YG ++ + P L + + A L G +R+G +
Sbjct: 181 EAKRLVEHGYHEIVLTGIHLGNYGIEL-LEKPNLAHVVKALLEIPGLERIRLGSIESVEV 239
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
E L ++ + + P + LH+P+Q+GSD +L MNR Y L +F+ ++ L +PG+ I
Sbjct: 240 SEELVDL--MAKDPRFCTHLHLPLQAGSDHILKLMNRHYNLQEFKDLIARLRSRIPGLAI 297
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFPGETDEDF +T+ ++E F +H + R GTPAA M+ +VP AV K R
Sbjct: 298 TTDIIAGFPGETDEDFEETMRTVEEIGFTHIHAFPYSKREGTPAATMEDQVPEAVKKTRV 357
Query: 401 RELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ 444
L S+ + F M G+ I I E DG +L G T Y+
Sbjct: 358 ALLNSLGQKGLQKFAEQ--MIGKPAEILI-EREEDGYYL-GFTNEYIH 401
>gi|423395928|ref|ZP_17373129.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|423406803|ref|ZP_17383952.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
gi|401653670|gb|EJS71214.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-1]
gi|401660093|gb|EJS77576.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-3]
Length = 509
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVEFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNELAVEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
++G VK+T WS+ GE+++
Sbjct: 477 PKALIGQLVKVKVTEAKTWSLNGELVE 503
>gi|423457441|ref|ZP_17434238.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
gi|401147825|gb|EJQ55318.1| MiaB/RimO family radical SAM methylthiotransferase [Bacillus cereus
BAG5X2-1]
Length = 450
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ +VL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIKVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|217076413|ref|YP_002334129.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermosipho
africanus TCF52B]
gi|229891011|sp|B7IFC4.1|MIAB_THEAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|217036266|gb|ACJ74788.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Thermosipho africanus
TCF52B]
Length = 429
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 228/441 (51%), Gaps = 37/441 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
++KT+GC N++DSE L GY +N EADI ++NT + A D I +
Sbjct: 3 FFIKTYGCQMNENDSEVARYYLEQEGYESAENENEADIVILNTCVVRKKAEDKFLSTIGE 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKE---LEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 169
+ K + V GC G+ LKE GV+ ++G + I R+ E VE ++KG + +
Sbjct: 63 LRKKNKKIGVMGC---GAEKLKEDLFKRGVNFVIGTRAISRIPEAVELSIKGKKAAIFD- 118
Query: 170 KKLPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
KL +D + R +K + I GC CTYC + RG S ++ ++ V+ +
Sbjct: 119 DKLDEIDYRNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKMDDILREVKNLS 178
Query: 228 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI-GMTNPP--FIL 282
+GV+E+ ++ AYG+D+ G +L LLN + RI +T+ P F L
Sbjct: 179 LNGVREITYLGQNVDAYGKDLNDGTSLAKLLNE-----TKKIENIERIWFLTSYPTDFSL 233
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ +EIA + + +H+PVQ GS+ +L MNR YT+ ++ ++ ++ E+VP I+
Sbjct: 234 DIAREIASSEK---IAKSIHLPVQHGSNKILKKMNRRYTIEEYYELIKSIREIVPDASIS 290
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVKKRS 400
+DII GFP ET++DF QTV L++E KF +++++ + PR GT A + VP A+ +R
Sbjct: 291 SDIIVGFPDETEDDFQQTVKLVEEIKFERLNLAIYSPREGTIAWKYFEDNVPRAIKTRRM 350
Query: 401 RELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L ++ + L ++ VE I + E A G+ + + + +++G
Sbjct: 351 AYLLNLQKEINKMLNESYLDKTVEVI-VEERAKSGLFYGRDIRNKI-IAFEGDESLIGKK 408
Query: 458 ALVKITSVGRWSVFGEVIKIL 478
LVKI ++G++IKI+
Sbjct: 409 ILVKIKKTTAGPLYGDIIKII 429
>gi|212639354|ref|YP_002315874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus WK1]
gi|229890441|sp|B7GJM6.1|MIAB_ANOFW RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|212560834|gb|ACJ33889.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 527
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 220/439 (50%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NT ++A + + I
Sbjct: 86 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 145
Query: 114 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ +++E E
Sbjct: 146 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 205
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 206 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 265
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 266 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 324
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + E +PG+ +
Sbjct: 325 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 382
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + PR GTPAA+M VP V K+R
Sbjct: 383 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERL 442
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V + +G
Sbjct: 443 QRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNFVGPKSAIGQL 502
Query: 458 ALVKITSVGRWSVFGEVIK 476
V+IT W++ GE+++
Sbjct: 503 VNVRITEAKTWTLNGEMVE 521
>gi|75909246|ref|YP_323542.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anabaena
variabilis ATCC 29413]
gi|123758760|sp|Q3M8N9.1|MIAB_ANAVT RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|75702971|gb|ABA22647.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena variabilis ATCC
29413]
Length = 454
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 145/452 (32%), Positives = 221/452 (48%), Gaps = 40/452 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KS 116
++ TFGC N++DSE MAG L G+ +++ AD+ L NT + D K +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ + RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAVRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G +L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEE 361
Query: 396 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST 450
K +R L +V A M GR+E + + E D ++G T+G
Sbjct: 362 TKSDRLQRLNHLVNVKAAERSQRYM-GRIEEVLVEEQNPKDQTQVMGRTRGNRLTFFKGD 420
Query: 451 GNML-GTSALVKITSVGRWSVFGEVIKILNQV 481
N L G VKI V +S+ GE I+I V
Sbjct: 421 INELKGQLVKVKINEVRAFSLTGEPIEIRQAV 452
>gi|30021864|ref|NP_833495.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 14579]
gi|81432671|sp|Q812Y0.1|MIAB_BACCR RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|29897420|gb|AAP10696.1| tRNA 2-methylthioadenosine synthase [Bacillus cereus ATCC 14579]
Length = 509
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 227/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDFLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|423469985|ref|ZP_17446729.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
gi|402437237|gb|EJV69261.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-2]
Length = 509
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 226/451 (50%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ DG L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VK+T WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|196247551|ref|ZP_03146253.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
gi|229890686|sp|A4IMH7.2|MIAB_GEOTN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|196212335|gb|EDY07092.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. G11MC16]
Length = 523
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 219/437 (50%), Gaps = 26/437 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NT ++A + + +
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 141
Query: 115 ----KSAKKPLV--VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ L+ V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 201
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 379 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERL 438
Query: 401 RELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + A EG+V + + E + L G+T+ V +++G
Sbjct: 439 QRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 498
Query: 458 ALVKITSVGRWSVFGEV 474
V+IT W++ GE+
Sbjct: 499 VNVRITQAKTWTLTGEL 515
>gi|433445654|ref|ZP_20409960.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
gi|432000930|gb|ELK21818.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Anoxybacillus
flavithermus TNO-09.006]
Length = 526
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 220/439 (50%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NT ++A + + I
Sbjct: 85 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 144
Query: 114 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ +++E E
Sbjct: 145 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQFQYVDMIFGTHNIHRLPYILKEAYMSKE 204
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 205 MVVEVWSKEGDVIENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 264
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 265 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 323
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + E +PG+ +
Sbjct: 324 DDRLIEV--LAKGGNLVEHIHLPVQSGSSEVLKMMARKYTREQYLELVRKIKEAIPGVAL 381
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + PR GTPAA+M VP V K+R
Sbjct: 382 TTDIIVGFPNETDEQFEETLSLYREVEFDSAFTFIYSPREGTPAAKMVDNVPMEVKKERL 441
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V + +G
Sbjct: 442 QRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDVLAGYTRKNKLVNFVGPKSAVGQL 501
Query: 458 ALVKITSVGRWSVFGEVIK 476
V+IT W++ GE+++
Sbjct: 502 VNVRITEAKTWTLNGEMVE 520
>gi|228916942|ref|ZP_04080503.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|301055802|ref|YP_003794013.1| hypothetical protein BACI_c42790 [Bacillus cereus biovar anthracis
str. CI]
gi|228842663|gb|EEM87750.1| hypothetical protein bthur0012_41550 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377971|gb|ADK06875.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 450
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 219/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMETEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|229151973|ref|ZP_04280169.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
gi|228631528|gb|EEK88161.1| hypothetical protein bcere0011_35140 [Bacillus cereus m1550]
Length = 509
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 227/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|423649637|ref|ZP_17625207.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
gi|401282917|gb|EJR88814.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD169]
Length = 509
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 227/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|152976740|ref|YP_001376257.1| RNA modification protein [Bacillus cytotoxicus NVH 391-98]
gi|152025492|gb|ABS23262.1| RNA modification enzyme, MiaB family [Bacillus cytotoxicus NVH
391-98]
Length = 450
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD++++NT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQSGYERVDFEKTADVYVVNTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q +++++ +E+ + + V
Sbjct: 63 RAVRHNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLDYIEQYRQERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAGLLRDMEAEVK--GLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ ++ L E +PG+ I
Sbjct: 240 D---EVIEVLDKSKVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLNRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ ++P V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQIPEEVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++V+ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEPFKEGDREGLYVGYTDNYLKVVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G G+ +++L
Sbjct: 417 KLVKVKITKAGYPYNEGQFVRVL 439
>gi|229111245|ref|ZP_04240799.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|229129049|ref|ZP_04258022.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|229146344|ref|ZP_04274715.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|296504271|ref|YP_003665971.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|423585817|ref|ZP_17561904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|423641145|ref|ZP_17616763.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|423656633|ref|ZP_17631932.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
gi|228636977|gb|EEK93436.1| hypothetical protein bcere0012_34870 [Bacillus cereus BDRD-ST24]
gi|228654286|gb|EEL10151.1| hypothetical protein bcere0015_34940 [Bacillus cereus BDRD-Cer4]
gi|228672239|gb|EEL27529.1| hypothetical protein bcere0018_34910 [Bacillus cereus Rock1-15]
gi|296325323|gb|ADH08251.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis BMB171]
gi|401233163|gb|EJR39659.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD045]
gi|401280206|gb|EJR86128.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD166]
gi|401290374|gb|EJR96068.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD200]
Length = 509
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 227/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|398304580|ref|ZP_10508166.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
vallismortis DV1-F-3]
Length = 509
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 221/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL ++ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDHLIDV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + + EG+V + + E + L G+T+ V T +G
Sbjct: 425 QRLNALVKEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGTKEAVGKI 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|229163255|ref|ZP_04291210.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
gi|228620318|gb|EEK77189.1| hypothetical protein bcere0009_40230 [Bacillus cereus R309803]
Length = 454
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 140/455 (30%), Positives = 226/455 (49%), Gaps = 33/455 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE + + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRQERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + E V I E +G VG+T Y++++ + +++G
Sbjct: 357 HRLIELSNQLAKEYASQFEDEVLEIIPEEQFKEGDRKGLYVGYTDNYLKIVFEGSEDLIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRR 490
VKIT G + +++L +D + N++
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL---EDDVKKNQQ 448
>gi|423418319|ref|ZP_17395408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
gi|401106592|gb|EJQ14553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG3X2-1]
Length = 509
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETISLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|218905447|ref|YP_002453281.1| MiaB family RNA modification protein [Bacillus cereus AH820]
gi|218535522|gb|ACK87920.1| RNA modification enzyme, MiaB family [Bacillus cereus AH820]
Length = 450
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 219/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRXERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G + +++L
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVL 439
>gi|170287904|ref|YP_001738142.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
gi|170175407|gb|ACB08459.1| MiaB-like tRNA modifying enzyme [Thermotoga sp. RQ2]
Length = 434
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 223/435 (51%), Gaps = 41/435 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAK 118
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+ + + K K
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPGGD-ASYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 K---------PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 168
K +++ GC Q S D + L I+G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPDEARNLPVDMILGIDEKKNIVDHIN-SLNGKQQVVVS 119
Query: 169 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 224
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ G KE+ ++ + G YG+D+G +L LL IV E+P G +R+ N + +
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLR-IVEEIP--GDYRVRLSSINVEDVND- 233
Query: 285 LKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I T
Sbjct: 234 --EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITT 291
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAV 395
DII GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V
Sbjct: 292 DIIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDV 351
Query: 396 VKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
+K+++++++ + +G E +V W G+ L G+ + YV+ GN +G
Sbjct: 352 LKEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGV-LSGYDEYYVK--HEFVGNRVG 403
Query: 456 TSALVKITSVGRWSV 470
V++ S+ V
Sbjct: 404 EFHSVRVKSLSEEGV 418
>gi|138894823|ref|YP_001125276.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
thermodenitrificans NG80-2]
gi|134266336|gb|ABO66531.1| tRNA 2-methylthioadenosine synthase [Geobacillus
thermodenitrificans NG80-2]
Length = 580
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/437 (29%), Positives = 219/437 (50%), Gaps = 26/437 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NT ++A + + +
Sbjct: 139 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGELGY 198
Query: 115 ----KSAKKPLV--VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ L+ V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 199 LKPLKTTNPDLLLGVCGCMSQEEAVVNKILKQYQYVDLIFGTHNIHRLPYILHEAYMSKE 258
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 259 MVVEVWSKEGDVVENLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 318
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 319 EVRQLAAQGYKEITLLGQNVNAYGKDFN-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 377
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 378 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKMMGRKYTREEYLELVRKIKAAIPDVAL 435
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 436 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMNDNVPMEVKKERL 495
Query: 401 RELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + A EG+V + + E + L G+T+ V +++G
Sbjct: 496 QRLNALVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYTRKNKLVHFVGPKSLIGQL 555
Query: 458 ALVKITSVGRWSVFGEV 474
V+IT W++ GE+
Sbjct: 556 VNVRITQAKTWTLTGEL 572
>gi|452207624|ref|YP_007487746.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
gi|452083724|emb|CCQ37039.1| MiaB-like tRNA modifying enzyme [Natronomonas moolapensis 8.8.11]
Length = 414
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 215/430 (50%), Gaps = 32/430 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------IA 112
T +++T+GC+ N+ +S + L G+ + + EAD+ ++NT + ++
Sbjct: 3 TYHIETYGCTSNRGESRRIERSLRDAGHRPVEGTAEADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ +S L+V GC+ L + E + + VQ + E V + E
Sbjct: 63 ELESETADLIVTGCMA-----LAQGEAFADLDVQVLH--WEDVPSAVTNGECPTTTPDAE 115
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S T+E+ V + R ++ G K
Sbjct: 116 PILD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPTIEANVEKARALVHAGAK 168
Query: 233 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 169 EIRVTGQDTGVYGWDTGERKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELADV 225
Query: 292 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y F+H PVQSGSD VL AM R++ + FR VVDT + ++TD I GFP
Sbjct: 226 FADNRKLYDFIHAPVQSGSDEVLEAMRRQHRVGKFREVVDTFEGRLDHWTLSTDFIVGFP 285
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410
ET+ DF +++ L+ + + ++++++F RPGT AA MK + + K+RS+ ++ +
Sbjct: 286 TETEADFERSMALLADVRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKAMSELKREI 345
Query: 411 T--PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITSV 465
+ M G + E G + + Y QV+V G +G V++T+
Sbjct: 346 CTETHASMVGETHEVLAVE-PGTGDSIKCRDEAYRQVIVTDAAERGVEVGDLLEVEVTAH 404
Query: 466 GRWSVFGEVI 475
FGE I
Sbjct: 405 EAMYCFGEPI 414
>gi|30264381|ref|NP_846758.1| hypothetical protein BA_4535 [Bacillus anthracis str. Ames]
gi|47529832|ref|YP_021181.1| hypothetical protein GBAA_4535 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187205|ref|YP_030457.1| hypothetical protein BAS4209 [Bacillus anthracis str. Sterne]
gi|65321683|ref|ZP_00394642.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
gi|165872059|ref|ZP_02216699.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167638687|ref|ZP_02396963.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170707478|ref|ZP_02897932.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177653235|ref|ZP_02935487.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190566951|ref|ZP_03019867.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227817086|ref|YP_002817095.1| MiaB family RNA modification protein [Bacillus anthracis str. CDC
684]
gi|229600003|ref|YP_002868599.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|254736415|ref|ZP_05194121.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254750891|ref|ZP_05202930.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Vollum]
gi|254757781|ref|ZP_05209808.1| RNA modification enzyme, MiaB family protein [Bacillus anthracis
str. Australia 94]
gi|386738199|ref|YP_006211380.1| MiaB family RNA modification protein [Bacillus anthracis str.
H9401]
gi|421506565|ref|ZP_15953488.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
gi|30259039|gb|AAP28244.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504980|gb|AAT33656.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181132|gb|AAT56508.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164712190|gb|EDR17727.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167513535|gb|EDR88905.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170127722|gb|EDS96595.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|172081517|gb|EDT66589.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190561942|gb|EDV15911.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227006018|gb|ACP15761.1| RNA modification enzyme, MiaB family [Bacillus anthracis str. CDC
684]
gi|229264411|gb|ACQ46048.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
A0248]
gi|384388051|gb|AFH85712.1| RNA modification enzyme, MiaB family [Bacillus anthracis str.
H9401]
gi|401823558|gb|EJT22705.1| MiaB family RNA modification protein [Bacillus anthracis str. UR-1]
Length = 450
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 219/443 (49%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY T+ ++AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQGGYERTEYEKKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q ++++ +EE K + V
Sbjct: 63 RAVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEEFRKERQPINAV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG DI NL LL + AE+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDIKDYNLAGLLRDMEAEV--GGLKRLRISSIEASQIS 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL + V LH+P+QSGS+ VL M R+YT+ F+ +D L E +PG+ I
Sbjct: 240 D---EVIEVLDKSEVVVRHLHIPLQSGSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +VP V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L + EG V I E +G VG+T Y++++ + ++G
Sbjct: 357 HRLIELSNQLAKEYASQFEGEVLEIIPEEQFKEGDREGLYVGYTDNYLKIVFEGSEELIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKI G + +++L
Sbjct: 417 KLVKVKIMKAGYPYNEAQFVRVL 439
>gi|260892471|ref|YP_003238568.1| MiaB family RNA modification protein [Ammonifex degensii KC4]
gi|260864612|gb|ACX51718.1| RNA modification enzyme, MiaB family [Ammonifex degensii KC4]
Length = 447
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 212/428 (49%), Gaps = 32/428 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------I 111
Y+ T+GC N+ DSE MAG + GY + EEAD+ L+NT +SA + + +
Sbjct: 11 YIFTYGCQMNEWDSEVMAGLVEEMGYTRAGSPEEADLILLNTCCVRESAENKVWGLLGSL 70
Query: 112 AKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHEV 164
+ K + L+ V GC+PQ E++ IVG + ++ E +G V
Sbjct: 71 GRLKQRRPWLLLGVTGCLPQRPGAAAEIKRRFPFVDLIVGTYNRHELPRLILEAERGQVV 130
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ ++ LP R ++ +PI GC CTYC + RG S E ++ V+
Sbjct: 131 AVSPEEQEIVEGLPIRRESRLRAWVPIMFGCNNFCTYCIVPYVRGKERSRRPEDILREVK 190
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILE 283
+ +G +E++L ++ AYG+ G+ P+ ++ +L +G +R ++P E
Sbjct: 191 ELAKEGYREIFLLGQNVNAYGK--GLQPPVTFADLLRQLNAVEGIWRIRYTTSHPRDFGE 248
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L I V P V H+PVQ+GSD +L M R YT D+ +V + E++P +T
Sbjct: 249 DL--IRAVAELPKVCENFHLPVQAGSDKILRRMGRGYTRQDYLNLVRRIREVLPQASFST 306
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
DI+ GFPGET+EDF QT+ L++E F Q I + PRPGTPAA +VP V +R +
Sbjct: 307 DIMVGFPGETEEDFEQTLLLVREVGFDQAFIFIYNPRPGTPAASFPDQVPHEVKVERIKR 366
Query: 403 LTSVFEAFTPYLGMEGRVERIWITEIAADGI------HLVGHTKGYVQVLVPSTGNMLGT 456
L ++ +A + R E + E+ +G L G T+ Y V++ T + G
Sbjct: 367 LLALQQAIS---RERNRAEVGKVHEVLVEGPSRTNPDRLEGRTRTYKTVILDGTPELTGK 423
Query: 457 SALVKITS 464
V+IT+
Sbjct: 424 LVAVRITA 431
>gi|224541752|ref|ZP_03682291.1| hypothetical protein CATMIT_00924 [Catenibacterium mitsuokai DSM
15897]
gi|224525356|gb|EEF94461.1| tRNA methylthiotransferase YqeV [Catenibacterium mitsuokai DSM
15897]
Length = 435
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 211/433 (48%), Gaps = 23/433 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N +SE M GY D AD+++INT + +T +K + +
Sbjct: 3 TVAFHTLGCKVNSYESEAMLEIFKKRGYETIDFESPADVYVINTCTVTNTGDSKSRQMIR 62
Query: 120 P---------LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRL 166
+ V GC Q S ++ +EGVS+V G Q +V+ VEE H+ V++
Sbjct: 63 KAHRTNPEAVICVVGCYSQVASEEITGIEGVSVVLGTQHRASIVDFVEEYKSTHKQIVKI 122
Query: 167 LHRKKLPALDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ K+ + + NK L I GC CTYC +ARG + S E ++ + +
Sbjct: 123 ENVMKVSRFEDLSIHAFENKTRAFLKIQDGCNNFCTYCIIPYARGGVRSRPKEDVLRQAQ 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G E+ L+ T YG D+ + LL + ++ G LRI + +
Sbjct: 183 ELVDRGFVEIVLTGIHTAGYGVDLENYSFYDLLVDLTTKIK--GLKRLRISSIEMSQVSD 240
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ E+ + + P + LH+P+QSG+D++L M R Y ++F L E +PG+ I T
Sbjct: 241 EIIEL--IGKSPIIVDHLHIPIQSGTDSILRRMARHYNTAEFEKKYFELKEALPGISITT 298
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
D+I GFPGET+EDF T N IK+ F Q+H+ + R GTPA RM +VP V K+R R
Sbjct: 299 DVIVGFPGETEEDFVDTYNWIKKLHFNQLHVFPYSRRRGTPADRMPSQVPGDVKKERVRR 358
Query: 403 LTSVFEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
L + + T + E E + E DG ++VGH Y++VLV T G VK
Sbjct: 359 LLKLSDELKTEFALSEMNKELEVLIEEEKDG-YMVGHASNYLKVLVADTSLKEGHIYKVK 417
Query: 462 ITSVGRWSVFGEV 474
+T + + G V
Sbjct: 418 VTDHRGYDLIGVV 430
>gi|336113897|ref|YP_004568664.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
gi|335367327|gb|AEH53278.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus coagulans 2-6]
Length = 515
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/442 (30%), Positives = 220/442 (49%), Gaps = 26/442 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG GY T+ E+AD+ L+NT ++A + + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130
Query: 117 AK-----KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 161
K KP + V GC+ Q ++ L++ V +V G I R+ +++E K
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPYILKEAYMSKA 190
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D +L L ++ +L +R ++P
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+YT + +V + +P + +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVAL 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+TDII GFP ET+E F +T++L KE F + + PR GTPAARMK +P V K+R
Sbjct: 368 STDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERL 427
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + A++ EG+V + + E + L G+T+ V + +G
Sbjct: 428 QRLNELVNAYSKAAMEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAIGKL 487
Query: 458 ALVKITSVGRWSVFGEVIKILN 479
VKIT WS+ GE++ +L+
Sbjct: 488 VQVKITKAKTWSLDGEMVAVLD 509
>gi|379003862|ref|YP_005259534.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
gi|375159315|gb|AFA38927.1| MiaB-like tRNA modifying enzyme, archaeal-type [Pyrobaculum
oguniense TE7]
Length = 416
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 230/436 (52%), Gaps = 45/436 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKC 114
Y++T+GC ++D+E + +L G + E+AD+ +I T + + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 115 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 231
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 232 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 288 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 345
+ ++++ VY + H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDKVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGE ++DF ++V L++E + +VH+++F PRP T AA M ++VP A K+RS+ L+
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 342
Query: 405 SV-FEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVP--STGNMLGTSALV 460
V G+ G + + I E+ D +VG Y QV+V ++G V
Sbjct: 343 EVSLRVARLRNGLRVGSRDVVLIDEV--DHGLVVGRASDYRQVVVKRGRGDGLIGQYREV 400
Query: 461 KITSVGRWSVFGEVIK 476
+I + G ++G++++
Sbjct: 401 QIVAAGAVYLYGDIVE 416
>gi|225865753|ref|YP_002751131.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
gi|225786232|gb|ACO26449.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB102]
Length = 509
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R ++A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLVANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|313888926|ref|ZP_07822586.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845099|gb|EFR32500.1| tRNA methylthiotransferase YqeV [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 432
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/441 (30%), Positives = 214/441 (48%), Gaps = 37/441 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLI 111
+T + T GC NQ +SE M+ + GY +N + +D++++NT + + I
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFESRGYRQVENDDFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 112 AKCKSAKKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 167
K K VVA GC Q S ++K +EGV +V G +R+V+++EE+ K +E
Sbjct: 63 RKSKKNNPNSVVAVVGCYSQVSPEEVKSIEGVDVVVGTTDRNRIVDLIEESKKNNE---- 118
Query: 168 HRKKLPALDLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
K DL VR N+ + + GC CTYC ARG + S T+E
Sbjct: 119 --KINIVKDLKNVREFANTTNFDSNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSRTIE 176
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
V RT+ G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 177 DSVREARTLADRGFKEIVLTGIHIGSFGMDLGDMRLIDLIEAIAEV--DGIERIRLSSVE 234
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P I + E A C + H+ +QSGS+ +L AMNR YT D+ + + +P
Sbjct: 235 PIIITDDFMERAVKTGKLCDH--FHLSLQSGSNNILKAMNRRYTREDYIEKANIIRNYMP 292
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ DII GFPGE+ EDF ++ ++KE F ++H+ ++ R T AA MK ++ V
Sbjct: 293 HAGLTADIIVGFPGESQEDFEDSMKIVKEVGFSRIHVFKYSKRKNTKAAVMKNQIDGNVK 352
Query: 397 KKRSRELTSVFEAFTPYLGMEG-RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
K+RS +L ++ E + E + + + E DG++ G+T Y++V S ++
Sbjct: 353 KERSEKLIALGEEYQEIFERENMKTTQSVLFEEEHDGVYY-GYTTNYIRVKAKSEEDLTN 411
Query: 456 TSALVKITSVGRWS---VFGE 473
VKI G + V GE
Sbjct: 412 KIKKVKILDTGEIANCEVLGE 432
>gi|119489699|ref|ZP_01622458.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
gi|119454436|gb|EAW35585.1| tRNA-i(6)A37 modification enzyme MiaB [Lyngbya sp. PCC 8106]
Length = 452
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 225/450 (50%), Gaps = 44/450 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G T + EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGLLFTADPNEADVVLYNTCTIRDNAEHKVYSYLGRQ 68
Query: 117 ----AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
K+P L++AGCV Q G L+ + + +V G Q +R+ E++E+ +G++V
Sbjct: 69 AKRKHKQPNLTLILAGCVAQQEGQTLLRRVPELDLVMGPQHANRLQELLEQVDEGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSNVTAW-VNVIYGCNERCTYCVVPNVRGIEQSRTPEAIRSEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ + P L + V ++P G LR +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGSTPEGRHKHTLTDLLSFVHDVP--GIERLRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L K AE+ P V H+P QSG + +L AM+R YT +R +++T+ E
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQILKAMSRGYTHEKYRRIINTVREY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 394
+P I+ D I GFPGET+E F T+ L+ + F ++ + + PRPGTPAA + +VP
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAALWENQVPDD 361
Query: 395 VVKKRSRELTSVF-----EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKG-YVQVLV 447
V R ++L + E Y GR+E + + E D ++G T+G + V
Sbjct: 362 VKADRLQQLNHLVGVKAAERSQRYF---GRIEEVLVEGENPRDPSQVMGRTRGNRLTFFV 418
Query: 448 PSTGNMLGTSALVKITSVGRWSVFGEVIKI 477
+ + G VK+T V +S+ E I++
Sbjct: 419 GNLAELKGKVLKVKVTEVRPFSLTAEAIEL 448
>gi|145591528|ref|YP_001153530.1| RNA modification protein [Pyrobaculum arsenaticum DSM 13514]
gi|145283296|gb|ABP50878.1| RNA modification enzyme, MiaB family [Pyrobaculum arsenaticum DSM
13514]
Length = 416
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 230/436 (52%), Gaps = 45/436 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKC 114
Y++T+GC ++D+E + +L G + E+AD+ +I T + + I +
Sbjct: 5 YIETYGCWLAKADAEIIRQRL---GLVAVERPEDADVVMIYTCAVREDGEVRQLARIREL 61
Query: 115 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
+K +VVAGC L +L +I R++ E ++G + R + K LP
Sbjct: 62 AGLRKEVVVAGC-------LAKLRPYTIKSAAPNARLLYPSE--VEGGQKREM--KVLPR 110
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADGV 231
+ + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A G
Sbjct: 111 YE------GGVIYTVPLQVGCLGNCTFCATKYTRGGAGYVKSANPDDVVRHVKEAVARGA 164
Query: 232 KEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
KE++L+ +D YG D+ G +LP LL I+ E+ +G +RIGM+ P
Sbjct: 165 KEIYLTGQDVITYGFDMRWRPGWSLPDLLERILREV--EGEYRVRIGMSEPWVFARFADR 222
Query: 288 IAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATDI 345
+ ++++ VY + H+PVQSGSD VL AM R YT+ ++R +V + + + +ATDI
Sbjct: 223 LLDIVKGDRRVYRYFHLPVQSGSDRVLRAMGRRYTVDEYRELVRKIRKTLGEFAFVATDI 282
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGE ++DF ++V L++E + +VH+++F PRP T AA M ++VP A K+RS+ L+
Sbjct: 283 IVGFPGEAEDDFWESVKLVEELQLDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRSKILS 342
Query: 405 SV-FEAFTPYLGME-GRVERIWITEIAADGIHLVGHTKGYVQVLVPS--TGNMLGTSALV 460
V G+ G + + I E+ D +VG Y QV+V ++G V
Sbjct: 343 EVSLRVARLRNGLRVGSRDVVLIDEV--DHGLVVGRASDYRQVVVKRGHGDGLIGQYREV 400
Query: 461 KITSVGRWSVFGEVIK 476
+I + G ++G++++
Sbjct: 401 QIVAAGAVYLYGDIVE 416
>gi|313681425|ref|YP_004059163.1| tRNA-i(6)a37 thiotransferase enzyme miab [Sulfuricurvum kujiense
DSM 16994]
gi|313154285|gb|ADR32963.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfuricurvum kujiense
DSM 16994]
Length = 433
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 219/446 (49%), Gaps = 43/446 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTQSAMDT------- 109
++ ++++T GC+ N DSE+M +L+A GY LTD++ AD+ LINT S +
Sbjct: 2 SKKLFIETLGCAMNVRDSEHMIAELNAHEGYELTDDAASADLILINTCSVREKPVHKLFS 61
Query: 110 ---LIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ K K A + V GC G +K V+ V G + + ++ +V+ + E
Sbjct: 62 ELGVFNKLKKADAKIGVCGCTASHLGKEIIKRAPYVNFVLGARNVSKIADVLHRD-RAVE 120
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + + + A R + + + I++GC CT+C RG S + +V V
Sbjct: 121 VEIDYDESQFAF--KDFRSSPYKAYINISIGCDKQCTFCIVPKTRGDEISIPPDLIVAEV 178
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNP 278
R + +G KEV+L ++ YGR +N LL + A + RI T+P
Sbjct: 179 RKAVENGAKEVFLLGQNVNNYGRRFSDVNDKMNFTELLRRVSA-----VEGLERIRFTSP 233
Query: 279 -PFIL--EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
PF + E L+E A R+P + +H+P+QSGS +L AM R YT F L EL
Sbjct: 234 HPFHMDDEFLEEFA---RNPKICKSMHMPLQSGSTDILKAMKRGYTKEWFLNRARKLREL 290
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
VP + I+TDII FPGE+D DF T++++KE +F QV ++ PRP T A V V
Sbjct: 291 VPDVSISTDIIVAFPGESDADFEDTLDVMKEVRFEQVFSFKYSPRPLTEAESFTNV---V 347
Query: 396 VKKRSRELTSVFEAFTPYL------GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 449
+ S +A+ + G+ G+ ++ E+ +DG ++ G + + + V
Sbjct: 348 DSELGSFRLSTLQAYQDTILDSISAGLLGKEYDVYFEELRSDG-YVAGRSDNNIMIKVKG 406
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
+ LG A VKIT V R +GE+I
Sbjct: 407 SEEWLGKIARVKITEVSRSVQYGEII 432
>gi|448737807|ref|ZP_21719841.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
gi|445803263|gb|EMA53562.1| MiaB-like tRNA modifying enzyme [Halococcus thailandensis JCM
13552]
Length = 414
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 215/432 (49%), Gaps = 36/432 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
+ +++T+GC+ N+ +S + +L G+ D AD+ ++NT ++ M
Sbjct: 3 SYHIETYGCTANRGESRAIERRLRDGGHHPVDGPANADVAILNTCTVVEKTETNMRRRAE 62
Query: 113 KCKSAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ A +VV GC+ QG + +L+ ++ G ++ VV + E
Sbjct: 63 ELDEATADVVVTGCMALAQGEQ-FADLD-ATVCGWDEVPEVV-------RNGECPRPTPD 113
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 114 AEPILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVRKARALVHAG 166
Query: 231 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDTGERKLHELLERICA---IDGDFRVRVGMANPKGVHGIREELA 223
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+V +Y+FLH PVQSGS+ VL M R++ +S+FR VV+T + + +ATD I G
Sbjct: 224 DVFAEEEKLYNFLHAPVQSGSNDVLGDMRRQHQVSEFRDVVETFDDRLDHWTLATDFIVG 283
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ETD D Q++ L++E ++++++F RPGT AA MK + K+RS+ ++ +
Sbjct: 284 FPSETDADHEQSMALLRETTPERINVTRFSKRPGTDAAEMKGLGGTKKKERSKAMSDLKM 343
Query: 409 AFT--PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNMLGTSALVKIT 463
Y M G + + E G + + + Y QV++ P G G V+IT
Sbjct: 344 DVVGDAYESMVGERHEVMVVEHGT-GDSVKCYDEAYRQVIIQDAPGYGVEPGDLVDVEIT 402
Query: 464 SVGRWSVFGEVI 475
FG+ +
Sbjct: 403 GQNTVYAFGKPV 414
>gi|47568277|ref|ZP_00238980.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
gi|47555105|gb|EAL13453.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9241]
Length = 509
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 135/447 (30%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V KKR
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKKRL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|410456793|ref|ZP_11310649.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
LMG 21833]
gi|409927550|gb|EKN64683.1| ribosomal protein S12 methylthiotransferase [Bacillus bataviensis
LMG 21833]
Length = 457
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 224/443 (50%), Gaps = 30/443 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY D +D+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQEGYERVDFEAISDVYIINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV +V G Q ++++ +E+ +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEIMAIPGVDVVVGTQDRVKMLDYIEQYKTERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKNRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL +LL + A + G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLALLLRDLEAGVR--GLERLRISSIEASQIT 239
Query: 283 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EV++H V LH+P+QSGSD+VL M R+YT+ F ++ L E++PG+ +
Sbjct: 240 D---EVIEVIKHSNIVVRHLHIPIQSGSDSVLKRMRRKYTMEFFGERLERLKEVLPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IK++KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKDHKFSELHVFPYSKRTGTPAARMEDQVDEEVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
L S+ + +G V + E + + VG+T Y++V+ P+T +M+G
Sbjct: 357 HRLISLSDQLAKEYASLFDGEVLEVIPEEEYKEEPNSGKYVGYTDNYLKVVFPATEDMVG 416
Query: 456 TSALVKITSVGRWSVFGEVIKIL 478
VKIT G G+ ++++
Sbjct: 417 KIVKVKITKAGYPFNEGQFVRVV 439
>gi|423401401|ref|ZP_17378574.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|423477894|ref|ZP_17454609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
gi|401654391|gb|EJS71934.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG2X1-2]
gi|402428819|gb|EJV60911.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-1]
Length = 509
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|423558664|ref|ZP_17534966.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
gi|401191932|gb|EJQ98954.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MC67]
Length = 509
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 225/451 (49%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y +T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYTRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ DG L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VK+T WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|15790759|ref|NP_280583.1| hypothetical protein VNG1861C [Halobacterium sp. NRC-1]
gi|169236502|ref|YP_001689702.1| hypothetical protein OE3617F [Halobacterium salinarum R1]
gi|10581306|gb|AAG20063.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727568|emb|CAP14356.1| MiaB-like tRNA modifying enzyme [Halobacterium salinarum R1]
Length = 432
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 220/439 (50%), Gaps = 36/439 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + +L G+ + + +AD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRDIERRLRDAGHHKVETAADADVAILNTCTVVEKTERNMLRRAKEL 64
Query: 116 -SAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
L+V GC+ L + E + V + V E + E P
Sbjct: 65 ADETADLIVTGCMA-----LAQGEAFADADVDAQVLHWDDVPEAVTNGECPTTTPDAEPI 119
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 234
LD V ILPI GC+ C+YC TK A G + S VE V + R ++ G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSNCSYCITKQATGRVDSPPVEENVEKARALVHAGAKEI 172
Query: 235 WLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 292
++ +DTG YG D G LP LL I E+ +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDTGERKLPELLERIATEI--EGEFRVRVGMANPGGVHGIREELAAVFA 230
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
H +Y+FLH PVQSGSD VL+ M R++ +S +R +V+T + + ++TD I GFP E
Sbjct: 231 EHDEIYNFLHAPVQSGSDDVLADMRRQHEVSQYRDIVETFNDTLGEWTLSTDFIVGFPTE 290
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 407
D+D +++L++E + ++++++F RPGT AA +K + K RS+ +T V
Sbjct: 291 DDDDHEASMDLLRETRPEKINVTRFSKRPGTDAAELKGLGGQTKKDRSKAMTELKMDVVG 350
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITS 464
EA +G R + + + E D + + Y QV+V + G G A V++TS
Sbjct: 351 EAHESMVGT--RRDVLVVEEGTGDSVKC--YDGAYRQVIVQNATDHGLEPGDFATVEVTS 406
Query: 465 VGRWSVFGEVIKILNQVDD 483
F E + VDD
Sbjct: 407 HQTVYAFAEPVDAA-AVDD 424
>gi|403069111|ref|ZP_10910443.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
sp. Ndiop]
Length = 518
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/439 (31%), Positives = 219/439 (49%), Gaps = 38/439 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAK 118
++T+GC N+ D+E MAG L+ GY T N+E+ADI L+NT ++A + + + K
Sbjct: 79 IRTYGCQMNEHDTEVMAGILTEMGYESTSNTEDADIILLNTCAIRENAENKVFGEIGHLK 138
Query: 119 -----KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
KP + V GC+ Q R LK+ + + ++ G I R+ ++++E L G E
Sbjct: 139 PLKLEKPDLIIGVCGCMSQEESVVDRILKKHQHIDLIFGTHNIHRLPQLIKEALFGKEMI 198
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ +LPKVR+ K + I GC CTYC RG S E ++ V
Sbjct: 199 VEVWSKEGDVIENLPKVRKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERSRRPEDIIQEV 258
Query: 224 RTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAIVA-ELPPDGSTMLRIGMTNPP 279
R ++A G +EV L ++ AYG+D I L L+N I ++P +R ++P
Sbjct: 259 RHLVAQGYQEVTLLGQNVNAYGKDFEDIQYGLGDLMNDIHKIDIP-----RVRFTTSHPR 313
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ L E+ + + + +H+PVQSGS +L MNR+Y+ D+ +V + + +P
Sbjct: 314 DFDDRLIEV--LAQGGNLLDHIHLPVQSGSTEILKKMNRKYSREDYLELVRKIRKAIPNA 371
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKK 398
+ TDII GFP ET+E F +T+ L++E F + + PR GTPAAR VP V K+
Sbjct: 372 TLTTDIIVGFPNETEEQFEETMTLMEEVGFEAAYTYIYSPREGTPAARKTDDVPEDVKKQ 431
Query: 399 RSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
R L + E+ Y G +V + E D L G+T+ V +
Sbjct: 432 RLYRLNELVNKQSAESMKKYDGQTVKV--LVEGESKKDPDVLAGYTEKNKLVNFKGPKSS 489
Query: 454 LGTSALVKITSVGRWSVFG 472
+G V+IT WS+ G
Sbjct: 490 IGNIVEVEITEAKTWSLNG 508
>gi|257060632|ref|YP_003138520.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8802]
gi|256590798|gb|ACV01685.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8802]
Length = 446
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/445 (30%), Positives = 220/445 (49%), Gaps = 38/445 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ +AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 69 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 129 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 187 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + L C + H+P QSG + +L AM R YT +R ++D + + +P
Sbjct: 247 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
I+ D I GFPGET+E F T+NL+++ F Q++ + + PRPGTPAA S VK
Sbjct: 305 ASISADAIVGFPGETEEQFENTLNLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKS 364
Query: 399 -RSRELTSVF-----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
R + L + E YL GR+E + + + D ++G T+G
Sbjct: 365 DRLQRLNHLVAQKAAERSQRYL---GRIEEVLVEDQNPKDSTQVMGRTRGNRLTFFKGDI 421
Query: 452 NML-GTSALVKITSVGRWSVFGEVI 475
N L G VKIT V +S+ GE++
Sbjct: 422 NQLKGRLIKVKITEVRAFSLTGEIV 446
>gi|48477501|ref|YP_023207.1| oxidoreductase [Picrophilus torridus DSM 9790]
gi|48430149|gb|AAT43014.1| hypothetical oxidoreductase [Picrophilus torridus DSM 9790]
Length = 426
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/376 (29%), Positives = 191/376 (50%), Gaps = 31/376 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI-------NTQSAMDTLIAK 113
+Y +++GC+ +S++ ++ G L D+ E AD+ +I +T+ M I +
Sbjct: 29 VYFESYGCTLEKSEAALYVNKMLQDGGELVDDPERADVSVIGTCVVIKHTEDHMLKRIGE 88
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ ++V GC+ + + E E + ++ K E R +
Sbjct: 89 LSKKSRNVLVLGCLATVNGNTLESENIRVI----------------KPREFRSFY---TG 129
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
LD K++ ++ +PIN GC G C +C + +RG L S + E +VG+VR I G++E
Sbjct: 130 TLDDVKIKEPSILDGIPINQGCTGHCNFCISHISRGKLLSRSPEKIVGQVRMQIESGIRE 189
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293
+ ++S DT AYG+DI +L L+N+I D MLR+GM P + L+++ + +
Sbjct: 190 IRITSLDTAAYGKDINTDLADLINSITG---LDVDFMLRVGMMEPRNTYDILEKLIDAYK 246
Query: 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353
+ V+ FLH+PVQSG + +L +MNREY + + V+ E P M +TDII G+ E
Sbjct: 247 NDKVFKFLHLPVQSGDNRILDSMNREYKIEEAGHVIKRFKEEFPDMVFSTDIIAGYYTED 306
Query: 354 DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFT-- 411
E T I+ Y ++I++F PRP TP K +PS + K+ S+++ + + +
Sbjct: 307 SESMENTYKFIETYMPDIINITRFSPRPYTPDFSRKTMPSNITKEFSKKIMEMHKEYMDE 366
Query: 412 PYLGMEGRVERIWITE 427
GR+ + +TE
Sbjct: 367 KLSRYHGRMLNVMVTE 382
>gi|229018968|ref|ZP_04175810.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
gi|228742296|gb|EEL92454.1| hypothetical protein bcere0030_34820 [Bacillus cereus AH1273]
Length = 509
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|423452926|ref|ZP_17429779.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|423522397|ref|ZP_17498870.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
gi|401139485|gb|EJQ47047.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X1-1]
gi|401175091|gb|EJQ82294.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA4-10]
Length = 509
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 226/451 (50%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ DG L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VK+T WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|423389967|ref|ZP_17367193.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
gi|401640883|gb|EJS58609.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-3]
Length = 509
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKAGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|206977875|ref|ZP_03238763.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217961193|ref|YP_002339761.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH187]
gi|222097218|ref|YP_002531275.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus Q1]
gi|229140413|ref|ZP_04268968.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|229197883|ref|ZP_04324599.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|375285694|ref|YP_005106133.1| hypothetical protein BCN_3600 [Bacillus cereus NC7401]
gi|384181582|ref|YP_005567344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|423353474|ref|ZP_17331101.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|423374431|ref|ZP_17351769.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|423567333|ref|ZP_17543580.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
gi|423574621|ref|ZP_17550740.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|229890422|sp|B7HLA6.1|MIAB_BACC7 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|206743875|gb|EDZ55294.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus H3081.97]
gi|217064945|gb|ACJ79195.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus AH187]
gi|221241276|gb|ACM13986.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228585601|gb|EEK43703.1| hypothetical protein bcere0001_34190 [Bacillus cereus m1293]
gi|228642974|gb|EEK99250.1| hypothetical protein bcere0013_35120 [Bacillus cereus BDRD-ST26]
gi|324327666|gb|ADY22926.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|358354221|dbj|BAL19393.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401089287|gb|EJP97458.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus IS075]
gi|401094343|gb|EJQ02425.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus AND1407]
gi|401212146|gb|EJR18892.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-D12]
gi|401214421|gb|EJR21151.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A12]
Length = 509
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 223/447 (49%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K + P + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|365840341|ref|ZP_09381533.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
gi|364561545|gb|EHM39437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anaeroglobus geminatus
F0357]
Length = 448
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/437 (31%), Positives = 218/437 (49%), Gaps = 32/437 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAK------C 114
T+GC N SDSE AGQL GY +T+++E AD+ L+NT ++A D ++ K
Sbjct: 13 TYGCQMNSSDSERYAGQLEELGYTMTEDAELADVILMNTCCVRETAEDKVLGKIGEFKHL 72
Query: 115 KSAKKPLVVA--GCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEE--TLKGHEVRLL 167
K+ L++A GC+ Q R K + +V G I +++++++E +GH +
Sbjct: 73 KARNNDLIIAVTGCMAQEWQERLFKRAPHLDLVIGTHNIHKLIDLIKEREEKRGHALATD 132
Query: 168 HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
+ D+P R KF +PI GC CTYC + RG S +E +V VR +
Sbjct: 133 MDGNV-FYDIPTRRFQKFFAWVPIMNGCNKFCTYCIVPYVRGREVSRPLEEIVEEVRNLA 191
Query: 228 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEH 284
+G KE+ L ++ +YG D G + LL A V E+ DG +R ++P
Sbjct: 192 DEGYKEITLLGQNVNSYGLDFKDGTDFSALLYA-VEEI--DGIERVRYMTSHPKDMTFAM 248
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
+ IA+ + V + LH+PVQSGS +L MNR Y+ + +++ + E +P + + TD
Sbjct: 249 VDAIAQCSK---VVTHLHLPVQSGSTELLKKMNRGYSAEHYLELIEYVREKIPDVALTTD 305
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 403
+I GFPGET++ F T+ L+K+ ++ + + PR GTPAA M +VP V R R L
Sbjct: 306 LIVGFPGETEDMFQDTLKLLKKVRYDMAYTFIYSPRTGTPAATMGNQVPQEVKSDRLRRL 365
Query: 404 TSVFEAFTPYLG--MEGR-VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM-LGTSAL 459
+V + MEGR E I D H G T G ++ + G + +G +
Sbjct: 366 MAVQNEISLACNKEMEGRDYEVIVEGPTKNDENHWFGRTSGNKMIIWENDGALAVGDTVP 425
Query: 460 VKITSVGRWSVFGEVIK 476
V + W + G +K
Sbjct: 426 VHVDKGQTWVLKGHTLK 442
>gi|327310209|ref|YP_004337106.1| MiaB family RNA modification protein [Thermoproteus uzoniensis
768-20]
gi|326946688|gb|AEA11794.1| RNA modification enzyme, MiaB family [Thermoproteus uzoniensis
768-20]
Length = 416
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 135/422 (31%), Positives = 226/422 (53%), Gaps = 45/422 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
IY++T+GC ++D++ + L G A+ ++ +AD+ L+ T + + + +
Sbjct: 3 IYVETYGCWLAKADAQIL---LQRLGGAVAESPRDADLVLVYTCAVREDGEVRQLRRLGQ 59
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVV-EETLKGHEVRLLHRKKL 172
S K LVVAGC+ + ++Q+ + E++ E ++G E R + L
Sbjct: 60 LASESKRLVVAGCLAKAR----------PYTIRQVAKNAELLYPEQVEGGEGRSMS--VL 107
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIAD 229
P D + +P+ VGCLG CT+C TK+ RG G S + +V V+ +A
Sbjct: 108 PEPD------GGLIYTVPLQVGCLGNCTFCITKYTRGGAGYVKSAPPDLVVEYVKKAVAK 161
Query: 230 GVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
G KE++L+ +D YG D G NLP LL I++++ +G +RIGM+ P +
Sbjct: 162 GAKEIYLTGQDVITYGFDARWRRGWNLPDLLEKILSQV--EGDYRIRIGMSEPWVFGKFA 219
Query: 286 KEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI-ELVPGMQIAT 343
I +++ R VY + H+PVQSGSD VL M R YT ++R ++ + EL + +AT
Sbjct: 220 DAILDIVKRDERVYRYFHLPVQSGSDEVLRRMGRRYTADEYRGLISKIKRELNDDVFVAT 279
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
D+I GFPGET+EDF T+ L++E +F +VH++++ RP T A+ M +++P AV K+RS+
Sbjct: 280 DVIVGFPGETEEDFRATLRLMEELEFDKVHVARYSRRPFTEASVMPEQIPDAVKKQRSKI 339
Query: 403 LT--SVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ ++ A + GR ++ + E+ D +VG Y QV+V LG+ V
Sbjct: 340 ASELALKIAHARNSRLIGRRLKVLVDEV--DHGLVVGRAPDYRQVVVGRGEGPLGSFLEV 397
Query: 461 KI 462
+I
Sbjct: 398 EI 399
>gi|423604599|ref|ZP_17580492.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
gi|401245219|gb|EJR51577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD102]
Length = 509
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 223/447 (49%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K + P + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|42782856|ref|NP_980103.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus ATCC 10987]
gi|81409496|sp|Q732V4.1|MIAB_BACC1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|42738783|gb|AAS42711.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 509
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 223/447 (49%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K + P + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|148269242|ref|YP_001243702.1| MiaB-like tRNA modifying protein [Thermotoga petrophila RKU-1]
gi|147734786|gb|ABQ46126.1| MiaB-like tRNA modifying enzyme [Thermotoga petrophila RKU-1]
Length = 434
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 192/358 (53%), Gaps = 28/358 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAK 118
+T+ ++TFGC NQ +SEYMA QL GY + + + +++N+ + + K K
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 K---------PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE--TLKGHEVRLL 167
K +++ GC Q S D E +S+ V ID +V+ +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118
Query: 168 HRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRV 223
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 119 SEPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEF 176
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++A G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 177 VEMVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND 233
Query: 284 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I
Sbjct: 234 ---EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSIT 290
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
TDII GFPGETD+DF +T++L+++ F +VHI +F PRPGTPA+RM VP + K+R
Sbjct: 291 TDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKER 348
>gi|229174437|ref|ZP_04301969.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
gi|228608997|gb|EEK66287.1| hypothetical protein bcere0006_35300 [Bacillus cereus MM3]
Length = 509
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|313893403|ref|ZP_07826975.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442044|gb|EFR60464.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella sp. oral
taxon 158 str. F0412]
Length = 438
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 219/443 (49%), Gaps = 32/443 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T+GC N +DSE ++ QL + GY T++ E AD+ L+NT + +
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYTPTEDVETADLILLNTCAVRENAETKVYGRI 61
Query: 111 --IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L++A GC+ Q ++ K + IV G I + E++EE +GH
Sbjct: 62 GELMRLKRKNKNLILAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQRGHT 121
Query: 164 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGTFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V + A G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGAKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + I + R + + LH+P+QSGSD +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMTKSM--IDALGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKN 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P V +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEVKR 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM- 453
R + L V + L MEG+V I + + D G T G VL P ++
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLS 414
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G + I W +G + K
Sbjct: 415 IGETVPAYIDKAQTWVCYGTIQK 437
>gi|415886653|ref|ZP_11548433.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
gi|387587340|gb|EIJ79663.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus MGA3]
Length = 514
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/444 (30%), Positives = 221/444 (49%), Gaps = 32/444 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG GY TD E+A++ L+NT ++A + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K +KP L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMEEIRKIDIPRVRFTTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS VL M R+YT ++ +V + +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII G+P ET+E F +T++L +E F + + PR GTPAA+M+ VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERL 427
Query: 401 RELTSVF-----EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNML 454
+ L ++ +A Y EG++ + + E + L G+T V + +
Sbjct: 428 QRLNALVNELSRDAMKKY---EGQIVEVLVEGESKNNPDVLAGYTSKNKLVNFTGPKSAI 484
Query: 455 GTSALVKITSVGRWSVFGEVIKIL 478
G VKIT WS+ GE+++ L
Sbjct: 485 GKIVKVKITKAKTWSLNGEMVEEL 508
>gi|340354922|ref|ZP_08677618.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
gi|339622936|gb|EGQ27447.1| tRNA-I(6)A37 modification enzyme MiaB [Sporosarcina newyorkensis
2681]
Length = 515
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 221/447 (49%), Gaps = 34/447 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG A GY TD ++AD+ L+NT ++A + + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMALGYEATDTVKDADVILLNTCAIRENAENKVFGELGH 130
Query: 117 AKKPLV---------VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
K PL V GC+ Q ++ LK + V ++ G I R+ ++ E
Sbjct: 131 LK-PLKLERPDLLIGVCGCMSQEESVVNKILKTYDQVDMIFGTHNIHRLPHILHEAYMSK 189
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E + + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 190 EMVIEVWSKEGDVIENLPKVRHGKIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDII 249
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + A+G KE+ L ++ AYG+D ++ L ++ +L +R ++P
Sbjct: 250 QEVRQLAAEGYKEITLLGQNVNAYGKDFD-DITYRLGDLMDDLRKIDIPRIRFTTSHPRD 308
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+HL E+ + + + +H+PVQSGS +L M R+YT + +V+ + +P
Sbjct: 309 FDDHLIEV--LAKGGNLVDHIHLPVQSGSSDMLKIMARKYTRESYLELVNKIRTAIPTAS 366
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII GFP ETDE F +T++L +E F + R GTPAA+M+ VP V K+R
Sbjct: 367 LTTDIIVGFPNETDEQFEETMSLYREVGFDMAFTYIYSAREGTPAAKMQDNVPMEVKKER 426
Query: 400 SRELTSVF-----EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM 453
+ L + EA PY +G+V ++ + E + L G+T+ V + ++
Sbjct: 427 LQRLNKLVNDMSAEAMKPY---KGQVVKVLVEGESKKNPDVLAGYTEKSKLVNFRAPRSV 483
Query: 454 LGTSALVKITSVGRWSVFGEVIKILNQ 480
+G V+I WS+ GE I ++ +
Sbjct: 484 IGEIVEVRIKEAKTWSLDGEFIGVVKE 510
>gi|319937480|ref|ZP_08011885.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
gi|319807320|gb|EFW03929.1| 2-methylthioadenine synthetase [Coprobacillus sp. 29_1]
Length = 438
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 211/433 (48%), Gaps = 41/433 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+T+ T GC N +SE M GY D ++AD+++INT + +T +I
Sbjct: 4 KTVAFLTLGCKVNTYESEAMLKLFHQAGYEAVDFKDKADVYVINTCTVTNTGDSKSRQMI 63
Query: 112 AKC--KSAKKPLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE-------TLK 160
K ++ K + V GC Q S ++ +EGV +V G Q +++V+ V E +K
Sbjct: 64 RKAIRQNEKAIVCVVGCYSQVASEEVVSIEGVGVVLGTQFRNQIVDFVNEYKTTQKPVIK 123
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+V L R LD+ + RN L I GC CTYC +ARG + S T ES++
Sbjct: 124 VADVMKLSR--FEDLDIDEFTRNTRA-FLKIQDGCNNFCTYCIIPYARGQIRSRTPESVL 180
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ ++++ G E+ L+ T YG+D + LL + ++ G LRI
Sbjct: 181 KQAQSLVDHGFVEIVLTGIHTAGYGQDFENYSFYDLLVDLTTKIK--GLKRLRISSIEMS 238
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
I + + ++ + P + LH+P+QSG DA L MNR YT ++F + L E +P +
Sbjct: 239 QITQEIIDL--IAMSPIIVDHLHIPIQSGCDATLKRMNRHYTTAEFSDKLRDLKEKLPSL 296
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
+ TD+I GFPGET+E+F QT I++ F Q+H+ + R GTPAARMK VK
Sbjct: 297 SVTTDVIVGFPGETEEEFQQTYQWIEKMHFNQLHVFPYSIRKGTPAARMKDQIDGHVKHD 356
Query: 400 --------SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 451
S+ L S F ++ G+ + I E D +VGH Y++V V
Sbjct: 357 RVKSLMDLSQRLQSEFASYQI-----GKTLEVLIEERHGD--RMVGHASNYLKVHVDLPD 409
Query: 452 NMLGTSALVKITS 464
+ +G VKI S
Sbjct: 410 SSIGHIYRVKILS 422
>gi|229098241|ref|ZP_04229188.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|229104336|ref|ZP_04235005.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|229117258|ref|ZP_04246636.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|407706177|ref|YP_006829762.1| uridylate kinase [Bacillus thuringiensis MC28]
gi|423378442|ref|ZP_17355726.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|423441498|ref|ZP_17418404.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|423448276|ref|ZP_17425155.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|423464572|ref|ZP_17441340.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|423533914|ref|ZP_17510332.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|423540817|ref|ZP_17517208.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|423547056|ref|ZP_17523414.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|423615966|ref|ZP_17591800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|423623153|ref|ZP_17598931.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|228666158|gb|EEL21622.1| hypothetical protein bcere0017_35380 [Bacillus cereus Rock1-3]
gi|228679034|gb|EEL33242.1| hypothetical protein bcere0019_34840 [Bacillus cereus Rock3-28]
gi|228685139|gb|EEL39070.1| hypothetical protein bcere0020_34750 [Bacillus cereus Rock3-29]
gi|401128870|gb|EJQ36553.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5O-1]
gi|401172005|gb|EJQ79226.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB4-10]
gi|401178777|gb|EJQ85950.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB5-5]
gi|401259926|gb|EJR66100.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD148]
gi|401260503|gb|EJR66676.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD115]
gi|401635209|gb|EJS52965.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1O-2]
gi|402418159|gb|EJV50459.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG4X2-1]
gi|402420839|gb|EJV53110.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6O-1]
gi|402464133|gb|EJV95833.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB2-9]
gi|407383862|gb|AFU14363.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis MC28]
Length = 509
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPSAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G + E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNGLAVEKNNRYKGQ--------VVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|435853697|ref|YP_007315016.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
gi|433670108|gb|AGB40923.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Halobacteroides halobius DSM 5150]
Length = 442
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/445 (30%), Positives = 219/445 (49%), Gaps = 42/445 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------I 111
+++T+GC N+ DSE +AG L GY D +AD+ ++NT + I
Sbjct: 8 FIRTYGCQMNEHDSEKLAGVLKDIGYKPADELAKADVIILNTCCVRENAELKVFGKLGEI 67
Query: 112 AKCKSAKKPLVVA--GCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE- 163
+ K L+V GC+ Q + +++ V IV G I R E+++E ++
Sbjct: 68 KQIKKENPGLIVGICGCMMQQEEVVNKIKQRYNFVDIVFGTHNIHRFPELLQEIKAENQS 127
Query: 164 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
V + + D+P R + I GC CTYC + RG S + E ++
Sbjct: 128 LVEVWDDSREVIGDMPTNREEDHKAKVNIIHGCDNYCTYCIVPYVRGSERSRSQEDIIKE 187
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAI--VAELPPDGSTMLRIGMTNP 278
++ ++ADGVKEV L ++ +YG+D+G +L LL A+ + LP +R ++P
Sbjct: 188 IKKLVADGVKEVMLLGQNVNSYGKDLGQDLDFADLLTAVNKIKGLP-----RIRFMTSHP 242
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ L E L + C + H+P+QSGSD +L MNR YT ++ +V L P
Sbjct: 243 RDFSDKLIEAVTNLENVCEH--FHLPIQSGSDKLLKKMNRGYTKEEYLDLVTKLKAKNPK 300
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
I+TD+I GFPGET+EDF +T+ L K+ +F + + R GTPAA+M ++VP K
Sbjct: 301 AAISTDLIVGFPGETEEDFAETMELYKQVRFDRAFTFIYSKRTGTPAAKMEEQVPEEKKK 360
Query: 398 KRSRELTSVFEAFTPYLGM-EGRVERIWITEIAADG------IHLVGHTKGYVQVLVPST 450
+R + L + +G+ E + + I E+ DG L G T+ V++ S
Sbjct: 361 ERHQRLLDL----QSKIGLEENKKLKGEIVEVLVDGPSKKDPNKLSGRTRTDKIVIIESD 416
Query: 451 GNMLGTSALVKITSVGRWSVFGEVI 475
++ G VKI W++FG+++
Sbjct: 417 QDLTGEIINVKINKAQSWTLFGKIV 441
>gi|374708575|ref|ZP_09713009.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus inulinus CASD]
Length = 494
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 214/434 (49%), Gaps = 25/434 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAK 118
++T+GC N+ D+E MAG L GY TD+ + AD+ LINT ++A + + + K
Sbjct: 54 IETYGCQMNEHDTEVMAGILEKMGYHETDDPKLADVILINTCAIRENAENKVFGHIGTLK 113
Query: 119 -----KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
KP L V GC+ Q ++ L + V ++ G I R+ ++++E L E
Sbjct: 114 TLKLEKPGLILGVCGCMAQEEVVVNKILAKHPQVDLIFGTHNIHRLPQLLKEALFSKEMV 173
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ +LP+ RR F + I GC CTYC + RG S E +V V
Sbjct: 174 VEVWSKEGDIVENLPQSRRGHFQAWVNIMYGCDKFCTYCIVPYTRGKERSRHPEEIVQEV 233
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + G KE+ L ++ AYG+D+ L ++ E+ G +R ++P +
Sbjct: 234 RELARQGYKEITLLGQNVNAYGKDLPDLENYGLGNLMDEIRQIGIPRVRFTTSHPKDFDD 293
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HL E+ + C + +H+PVQSGS +L M R YT + + + + VP T
Sbjct: 294 HLIEVLAKGGNLCEH--IHLPVQSGSSDILKIMGRGYTRERYLELFHKIKDAVPNASFTT 351
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII GFP ETDE F +T++L++E +F + PR GTPAARMK +P V K+R +
Sbjct: 352 DIIVGFPNETDEQFEETLSLVRECEFDGGFTFIYSPRAGTPAARMKDNIPMDVKKERLQR 411
Query: 403 LTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L + + F+ + VE + E + L GHT+ V +++G
Sbjct: 412 LNKLMDEFSAKSNAKYQDQTVEVLVEGESRKNPEVLSGHTRTNKVVNFRGPKSLIGELVK 471
Query: 460 VKITSVGRWSVFGE 473
VKIT+ WS+ GE
Sbjct: 472 VKITNAKMWSLNGE 485
>gi|146297053|ref|YP_001180824.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|229890495|sp|A4XL48.1|MIAB_CALS8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145410629|gb|ABP67633.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 471
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/445 (30%), Positives = 215/445 (48%), Gaps = 35/445 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL------- 110
+T ++ T+GC N DSE +AG L+A GY T N EEAD+ + NT + +
Sbjct: 35 NKTYHIITYGCQMNVHDSEKLAGMLNAMGYVETQNLEEADLIIFNTCAVREHAESRVYGN 94
Query: 111 ---IAKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--T 158
+ + K K L+ V GC+PQ ++L V I G + + + +++ + T
Sbjct: 95 IGPLKRLKDKKPELIIGVCGCMPQQLEVAQKLAKVFPFLDIIFGTKSLHKFPQLLYKAIT 154
Query: 159 LKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
K + + + + +P RR + I GC C+YC + RG S E
Sbjct: 155 TKKTVIDVAEDEDVVVEGIPTARREGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEE 214
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-----LNAIVAELPPDGSTMLRI 273
++ ++ + A+GVKEV L ++ +YG+D+ +P +NAI +G +R
Sbjct: 215 IIFEIQQLAANGVKEVTLLGQNVNSYGKDLPDGIPFYKLLEKVNAI------EGIERIRF 268
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P + + L L C + +H+PVQSGS +L MNR YT D+ +V+ L
Sbjct: 269 VTSHPKDLSDELIFAMRDLEKVCEH--IHLPVQSGSTRILRQMNRHYTKEDYLRLVEKLK 326
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 392
E +P + I TDII GFPGET+EDF T++++++ +F + + R GT AA+M +VP
Sbjct: 327 ENIPDIAITTDIIVGFPGETEEDFEDTLDVVRKVEFDSAYTFIYSKRKGTKAAQMPNQVP 386
Query: 393 SAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST 450
V +R + L + E A M G+V I I + L G T+ V V +
Sbjct: 387 DEVKHERFQRLVKLVEEIALKKNQQMLGKVCEILIDGYSKRNNLLEGRTRTNKVVNVKCS 446
Query: 451 GNMLGTSALVKITSVGRWSVFGEVI 475
+ VKI R ++GEVI
Sbjct: 447 DEFMYKFVNVKILEASRHWLYGEVI 471
>gi|389573169|ref|ZP_10163244.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388426866|gb|EIL84676.1| tRNA 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 508
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 219/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NT ++A + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K +KP L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA MK VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAANMKDNVPMRVKKERL 423
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+ + + E + L G+T V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 458 ALVKITSVGRWSVFGEVI 475
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|325295204|ref|YP_004281718.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065652|gb|ADY73659.1| MiaB-like tRNA modifying enzyme [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 437
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 128/365 (35%), Positives = 193/365 (52%), Gaps = 50/365 (13%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAK------ 118
T GC N ++ YM Q GY + D SEEADI+++NT + T +A KS K
Sbjct: 8 TLGCKMNFHETAYMEEQFKKRGYKIVDFSEEADIYIVNTCTV--TSVADSKSRKALRKAK 65
Query: 119 ----KPLVVA-GCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
K LVVA GC P+ L+E++ I G + ++V++VE+ ++G
Sbjct: 66 SRNPKALVVATGCYSEVYPEKVEKLEEVD--FITGNVEKFQIVDIVEKRIEG-------- 115
Query: 170 KKLPALDLPKV-RRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTV 216
KLP L L + + N+F + L I GC C+YC ARG + S
Sbjct: 116 -KLPRLYLRGIWKENQFYPLTIRHYEGKTRAFLKIQQGCELFCSYCIIPKARGKMLSEKP 174
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIG 274
E ++ +V+ +I G KE+ L+ G YG D+ ++L L+ IV ++P G LRI
Sbjct: 175 EKVLEQVKELINSGYKEIVLTGTHLGGYGLDLEESLSLAKLIEKIV-KIP--GLYRLRIS 231
Query: 275 MTNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
P +E E+ EV+ P + LH+P+QSGSD +L+ M R YT D++T+V+ ++
Sbjct: 232 SVEP---IEFSDELIEVVTSSPKIAPHLHIPLQSGSDRILNLMKRRYTKRDYKTIVERIL 288
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393
P + I TD++ GFPGET+EDF +T IKE+ F +H+ + PR GT A +MK S
Sbjct: 289 SKNPDICIGTDVMVGFPGETEEDFEETKKFIKEFPFGYIHVFPYSPRKGTVAYKMKDSVS 348
Query: 394 AVVKK 398
++ KK
Sbjct: 349 SLEKK 353
>gi|421076049|ref|ZP_15537051.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
gi|392525908|gb|EIW49032.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Pelosinus
fermentans JBW45]
Length = 458
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 145/467 (31%), Positives = 223/467 (47%), Gaps = 46/467 (9%)
Query: 45 LSKTGSLSPKIPGTE---------TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE 95
+SK + +IP E T Y T+GC N DSE +AGQL + GY T++ E+
Sbjct: 1 MSKPDQYNVEIPSNEMKDSNIKYFTTY--TYGCQMNHHDSERLAGQLKSIGYEYTESLED 58
Query: 96 ADIWLINT----QSAMDTLIAKCKSAKK--------PLVVAGCVPQGSRD--LKELEGVS 141
A LINT +SA + K K + +AGC+ Q ++ K+ +
Sbjct: 59 ASFILINTCCVRESAEKKIYGKIGELKNLKVSNPNLIIAIAGCMAQKDKEKLFKKAPHID 118
Query: 142 -IVGVQQIDRVVEVVEE--TLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGA 198
I+G + ++VE+V+E K + + + + A D+P +RR K +PI GC
Sbjct: 119 LIIGTHNVHQLVEIVKEFEESKDRVLAVWDQAERLAPDVPTIRRGKISAWVPIMYGCNNF 178
Query: 199 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILL 256
CTYC + RG S + ++ + + DG KE+ L ++ +YG D + LL
Sbjct: 179 CTYCIVPYVRGRERSRPLHDIIEEIYQLGLDGFKEITLLGQNVNSYGNDTKEYGDFADLL 238
Query: 257 NAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA 315
A+ T+ R+ MT+ P + K I +L + H+PVQSGSD +L
Sbjct: 239 KAV-----DQVETIERVRYMTSHPRDIND-KVIDTILNSKKICDHFHLPVQSGSDTILKM 292
Query: 316 MNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375
MNR YT +R +V + + +P + TDII GFPGETDE F +T+ +KE +F +
Sbjct: 293 MNRGYTTDYYRELVRKIRKAIPHASLTTDIIVGFPGETDELFQETLEFLKEIRFDASYTF 352
Query: 376 QFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAA---- 430
+ R GTPAA M +VP V K+R ++L V + L + + +T I
Sbjct: 353 LYSKRSGTPAATMADQVPLVVKKERLQKLMDVQNDIS--LEINQQFTDTVVTVIVEGPSQ 410
Query: 431 -DGIHLVGHTKGYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVI 475
D L+G T VL G +G A +KIT+ W + G++I
Sbjct: 411 RDENRLIGRTTTNKIVLWDKQGTEEVGQLANIKITTAQTWILKGKLI 457
>gi|402556105|ref|YP_006597376.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
gi|401797315|gb|AFQ11174.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus FRI-35]
Length = 509
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 223/447 (49%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG +A GY T ++EEAD+ L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEEADVVLLNTCAIRENAENKVFGELGH 127
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K + P + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|423458045|ref|ZP_17434842.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
gi|401148429|gb|EJQ55922.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG5X2-1]
Length = 509
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|428774566|ref|YP_007166354.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
gi|428688845|gb|AFZ48705.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium stanieri
PCC 7202]
Length = 451
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 215/446 (48%), Gaps = 36/446 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KSA 117
+ TFGC N++DSE MAG L GY T++ EA I + NT S D K K A
Sbjct: 10 ITTFGCQMNKADSERMAGILETMGYDFTEDPNEASIIVYNTCSIRDNAEQKVYSYLGKQA 69
Query: 118 KKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLL 167
K+ LVVAGCV Q G + L+ + + I+G Q +R+ ++++ G+++
Sbjct: 70 KRKHKEGDLTLVVAGCVAQQEGEQLLRRVPEIDLIMGPQHANRLDSLLDQVFAGNQIVAT 129
Query: 168 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPVHIFE-DITKPRRESSVSAWVNIIYGCNERCSYCVVPNTRGVEQSRTPEAIKAEIEEL 188
Query: 227 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 ARQGYKEITLLGQNIDAYGRDLPGTTETGRHKHTLTDLLYFIHDVEGIERIRFATSHPRY 248
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E L + L P V H+P QSG + VL AM R YT +R +++ + +P
Sbjct: 249 FTERLIKACHEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTHERYRDIINKIRGYMPHAA 306
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK--- 397
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRP TPAA + S VK
Sbjct: 307 ISADAIVGFPGETEEQFENTLRLVEDIGFDQLNTAAYSPRPQTPAAEWENQLSEEVKGDR 366
Query: 398 -KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNM 453
R L SV E YL G++E++ + ++ D +VG T G N
Sbjct: 367 LARLNHLVSVKAAERSQRYL---GKIEQVLVEDVNPKDATQVVGRTDGNRLTFFAGDINQ 423
Query: 454 L-GTSALVKITSVGRWSVFGEVIKIL 478
L G VKIT V +S+ GE + ++
Sbjct: 424 LKGKIVPVKITQVRAFSLTGEALTLV 449
>gi|448396870|ref|ZP_21569318.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
gi|445673399|gb|ELZ25960.1| MiaB-like tRNA modifying protein [Haloterrigena limicola JCM 13563]
Length = 417
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 222/434 (51%), Gaps = 41/434 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + DL I G + + E + + G ++LH ++P +
Sbjct: 59 RRAEELADETADL------FITGCMALAQGEEFAQADIDG---QVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP I +E+A+
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEKICA---IDGDFRVRVGMANPKGIHGIREELAD 226
Query: 291 VLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y FLH PVQSGSD VL M R++ + ++ VVDT + + ++TD I GF
Sbjct: 227 VFAANDELYDFLHAPVQSGSDDVLGDMRRQHQVQEYLEVVDTFDDTLDYWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E++
Sbjct: 287 PTETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSDLKRD 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V +A+ +G R + + + E AD + Y Q++V + G G ++
Sbjct: 347 LVADAYAEMVGQR-RDDCLVVEEGTADSVKC--RDSAYRQIIVQNASEHGLEPGDFVDLE 403
Query: 462 ITSVGRWSVFGEVI 475
IT+ FG+ +
Sbjct: 404 ITAHETMYAFGDPV 417
>gi|281411540|ref|YP_003345619.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
gi|281372643|gb|ADA66205.1| MiaB-like tRNA modifying enzyme [Thermotoga naphthophila RKU-10]
Length = 434
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/358 (34%), Positives = 192/358 (53%), Gaps = 28/358 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAK 118
+T+ ++TFGC NQ +SEYMA QL GY + + + +++N+ + + K K
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGD-VSYYIVNSCAVTKEVEKKVKRLI 60
Query: 119 K---------PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEE--TLKGHEVRLL 167
K +++ GC Q S D E +S+ V ID +V+ +L G + ++
Sbjct: 61 KSIRNRNRNAKIILTGCFAQLSPD--EARNLSVDMVLGIDEKKHIVDHINSLNGKQQVIV 118
Query: 168 HRKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRV 223
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 119 SEPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGSKIRSKPLEIFKDEF 176
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++A G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 177 VEMVAKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVND 233
Query: 284 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
EI E R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I
Sbjct: 234 ---EIVEAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYRISDFMRVVDKLRSIDPDFSIT 290
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
TDII GFPGETD+DF +T++L+++ F +VHI +F PRPGTPA+RM VP + K+R
Sbjct: 291 TDIIVGFPGETDDDFQKTLDLVEKVGFSRVHIFRFSPRPGTPASRMGGSVPESKKKER 348
>gi|149184079|ref|ZP_01862427.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
gi|148848213|gb|EDL62515.1| hypothetical protein BSG1_17550 [Bacillus sp. SG-1]
Length = 445
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 226/450 (50%), Gaps = 40/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY + AD+++INT + +T K +
Sbjct: 6 TVAFHTLGCKVNHYETEAIWQLFKEQGYERLEYENTADVYVINTCTVTNTGDKKSRQVIR 65
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 66 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRRKMLEYIEQFKEERQPINGV 125
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + L +P ++ L I GC CT+C ARG + S E ++ +
Sbjct: 126 GNIMKNRVYEELQVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSREPEEVIRQA 184
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL +LL + E DG +RI +
Sbjct: 185 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLRDL--EEKVDGLKRIRISSIEASQLT 242
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L + +PG
Sbjct: 243 DEVIEVIDNSKLVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLEKLKKALPG 296
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM ++ +
Sbjct: 297 LAVTSDVIVGFPGETEEEFKETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQIDEEIKN 356
Query: 398 KR-------SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST 450
+R S +L + + Y +E E ++ E G++ VG+T Y++V+ P+T
Sbjct: 357 ERVHRLIELSNQLAKEYASQFEYEVLEVIPEEVY-KEQPDSGLY-VGYTDNYLKVVFPAT 414
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIKILNQ 480
+M+G VK+T G G+ +++L +
Sbjct: 415 EDMVGKLVKVKLTKAGYPFNEGQFVRVLEE 444
>gi|126178768|ref|YP_001046733.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
gi|125861562|gb|ABN56751.1| MiaB-like tRNA modifying enzyme [Methanoculleus marisnigri JR1]
Length = 374
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/322 (35%), Positives = 171/322 (53%), Gaps = 34/322 (10%)
Query: 89 LTDNSEEADIWLINTQSAMDTLIAKCKS-----AKKPLVVAGCVPQGSRDLKELEGVSIV 143
+T++ EEAD ++NT + + K A + L V GC+P
Sbjct: 1 MTEHPEEADAVIVNTCTVIGATERKMLRRLALFADRDLYVTGCMP--------------- 45
Query: 144 GVQQIDRVVEVVEETLKGHEVRL--LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTY 201
V Q+D++ V H +R +H + R ++ + GC+G C+Y
Sbjct: 46 -VVQLDKIRSVCTP----HVIRPDEIHERAGSV----GTRGPGATGVVQVASGCVGRCSY 96
Query: 202 CKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261
C T+ ARG L S E++ VR ++ G E+ L+ +D A+G D G +LP LL I A
Sbjct: 97 CITRLARGRLISAPREAIADAVRALVTSGACEIQLTGQDVAAWGLDRGESLPDLLQEI-A 155
Query: 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 321
E+P G +R GM +P +L L+ + + ++ FLH+PVQSGSD VL M R YT
Sbjct: 156 EIP--GRFAVRPGMMHPATVLGILEPLVDAYESKKIFRFLHLPVQSGSDTVLERMQRGYT 213
Query: 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 381
+D +VD E P M I++D I GFPGETDE+F+QT+ L++ F +V+I+++ RP
Sbjct: 214 AADVLRIVDAFRERYPDMMISSDFITGFPGETDEEFSQTLELLRRAAFVKVNITRYSRRP 273
Query: 382 GTPAARMKKVPSAVVKKRSREL 403
GTPAA +K +P + K RSR L
Sbjct: 274 GTPAAALKDLPERIRKDRSRTL 295
>gi|322372210|ref|ZP_08046751.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
gi|320548219|gb|EFW89892.1| MiaB-like tRNA modifying enzyme, archaeal-type [Haladaptatus
paucihalophilus DX253]
Length = 417
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 131/430 (30%), Positives = 221/430 (51%), Gaps = 39/430 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK-- 115
+++T+GC+ N+ +S + L G+ + E+AD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRQIESALRDAGHYRVEGPEQADVAIMNTCTVVEKTERNMVRRAKEL 64
Query: 116 -SAKKPLVVAGCVP--QGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
S L++ GC+ QG E I+ + V E G V
Sbjct: 65 QSETADLIITGCMALAQGDEFRTEDVDAQIMHWDDVPTAVTNGECPTPGPGVE------- 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TKHA G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSVEENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L +LL+ I E+ +G +R+GM NP + +E+A+V
Sbjct: 171 ELRITGQDTGVYGWDRGERKLHVLLDRICNEI--EGDFRVRVGMANPKGVHGIREELAQV 228
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y+F+H PVQSGS+ VL M R++ + ++ +V+T E + ++TD I GFP
Sbjct: 229 FAENDELYNFIHAPVQSGSNDVLGDMRRQHQVEEYVEIVETFDEYLDYWTLSTDFIVGFP 288
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD+D Q++ L++E + ++++++F RP T AA+MK + K+RS+E++
Sbjct: 289 TETDDDHEQSMALLRETRPEKLNVTRFSKRPNTDAAKMKGLGGTKKKERSKEMSELKMDI 348
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V A+ +G E RV + + E D + + Y Q++V + G G V++
Sbjct: 349 VGAAYDEMVGTEKRV--MVVEEGTGDSVKC--RDEAYRQIIVQNATEHGIEPGDFLDVEV 404
Query: 463 TSVGRWSVFG 472
TS FG
Sbjct: 405 TSHQTVYAFG 414
>gi|428200507|ref|YP_007079096.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
gi|427977939|gb|AFY75539.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Pleurocapsa sp. PCC 7327]
Length = 451
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 222/449 (49%), Gaps = 46/449 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KS 116
++ TFGC N++DSE MAG L G+ +++ +AD+ L NT + D K +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFVRSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G + L+ + + +V G Q +R+ +++EE G +V
Sbjct: 69 AKRKHEQPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLHDLLEEVFAGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPVHIME-DITKPRRESAVTAW-VNVIYGCNERCTYCVVPSVRGIEQSRTPEAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELARQDYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYYVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L + + L P V H+P QSG + +L AM R YT +R +++ + E +
Sbjct: 245 HPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEILKAMKRGYTHQRYRQIIEKIRECM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPGTPAA + S V
Sbjct: 303 PDASISADAIVGFPGETEEQFENTLQLVEDLGFDQLNTAAYSPRPGTPAAIWENQVSEEV 362
Query: 397 K----KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPS 449
K +R L T E YL GR+E + + + D ++G T+G L
Sbjct: 363 KSDRLQRLNHLVATKAAERTQRYL---GRIEEVLVEDQNPKDSTQVMGRTRG--NRLTFF 417
Query: 450 TGN---MLGTSALVKITSVGRWSVFGEVI 475
TGN + G VKIT +S+ GE++
Sbjct: 418 TGNIQQLKGKLVKVKITEARAFSLTGEIV 446
>gi|397775943|ref|YP_006543489.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
gi|397685036|gb|AFO59413.1| MiaB-like tRNA modifying enzyme [Natrinema sp. J7-2]
Length = 417
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/408 (31%), Positives = 210/408 (51%), Gaps = 38/408 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
L + GC + QG + D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGDRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V H +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GF
Sbjct: 227 VFAEHDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P ET+ D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 287 PSETERDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSAVKRD 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 347 LVADAYADMVG-EVREDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|163941460|ref|YP_001646344.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
weihenstephanensis KBAB4]
gi|229890426|sp|A9VS16.1|MIAB_BACWK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163863657|gb|ABY44716.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus
weihenstephanensis KBAB4]
Length = 509
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 401 RELTSVFEAF-----TPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ + Y+G I E+ +G L G+T+ V +
Sbjct: 425 QRLNTLVNEYGVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|423483363|ref|ZP_17460053.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
gi|401140914|gb|EJQ48469.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG6X1-2]
Length = 560
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 119 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 178
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 179 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 238
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 239 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 298
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 299 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 357
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 358 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 415
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 416 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 475
Query: 401 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ + Y+G I E+ DG L G+T+ V +
Sbjct: 476 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 527
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 528 SKSLIGQLVKVKVTDAKTWSLNGELVE 554
>gi|448374494|ref|ZP_21558353.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
gi|445659933|gb|ELZ12733.1| MiaB-like tRNA modifying enzyme [Halovivax asiaticus JCM 14624]
Length = 417
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 129/400 (32%), Positives = 201/400 (50%), Gaps = 41/400 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESRQIERRLRDAGHHRVDGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
L V GC+ L + E GV + V E + E P
Sbjct: 65 ADETADLYVTGCMA-----LAQGEAFVNAGVDADVLHWDEVPEAVTNGECPTTTPDAEPI 119
Query: 175 LDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEV 234
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE+
Sbjct: 120 LD-------GVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVEKARALIHAGAKEL 172
Query: 235 WLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 292
++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A V
Sbjct: 173 RITGQDTGVYGWDDGERKLHRLLDRIC---DIEGDFRVRVGMANPKGVHGIREELASVFA 229
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
+ +Y FLH PVQSGSD VL M R++ +S++ VV+T + +P ++TD I GFP E
Sbjct: 230 DNEELYDFLHAPVQSGSDDVLGDMRRQHQVSEYVEVVETFDDALPYWTLSTDFIVGFPTE 289
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTP 412
TD D Q++ L++E + ++++++F RPGT AA MK + + K+RS E++
Sbjct: 290 TDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSSEMSE------- 342
Query: 413 YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
V+R + E AD +VG T+ V V+ TG+
Sbjct: 343 -------VKRELVREAYAD---MVGETREDVLVVEEGTGD 372
>gi|373857373|ref|ZP_09600115.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
gi|372453023|gb|EHP26492.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus sp. 1NLA3E]
Length = 514
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 135/455 (29%), Positives = 218/455 (47%), Gaps = 42/455 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
Y++T+GC N+ D+E MAG + GY TD E+A++ L+NT ++A + + I
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGICLSLGYQPTDTVEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 114 CKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE 163
K KK L V GC+ Q + ++ I G I R+ +++E E
Sbjct: 131 LKVLKKERPDLLLGVCGCMSQEESVVNKILSKHPHIDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G +E+ L ++ AYG+D+ + L ++ E+ G +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDL-TEMNYGLGNLMDEIRLMGVPRIRFSTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL I + + + +H+PVQSGS VL M R+YT + +V + +P + +
Sbjct: 310 DDHL--IKVLAKKGNLMEHIHLPVQSGSTDVLKIMARKYTREQYLELVQKIKAAIPDVTL 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII G+P ET+E F +T++L++E F + + PR GTPAA+M VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETMSLVREVGFEAAYTFIYSPREGTPAAKMHDNVPLEVKKERL 427
Query: 401 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ EA Y G + E+ +G+ L G+T+ V
Sbjct: 428 QRLNTLVNEQSAEAMKQYKGQ--------VVEVLVEGVSKNNSEVLAGYTRKSKLVNFNG 479
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDK 484
+G VKIT+ WS+ GE+++ V+ K
Sbjct: 480 PKTAIGKIVKVKITNTKTWSLNGEIVEEFEPVEVK 514
>gi|423611991|ref|ZP_17587852.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
gi|401246998|gb|EJR53342.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD107]
Length = 509
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 226/451 (50%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRHPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ DG L G+T+ V
Sbjct: 421 KERLQCLNTLVNEYAINKNKHYIGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VK+T WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKVTEAKTWSLNGELVK 503
>gi|448303684|ref|ZP_21493633.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
gi|445593469|gb|ELY47647.1| MiaB-like tRNA modifying protein [Natronorubrum sulfidifaciens JCM
14089]
Length = 417
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 223/434 (51%), Gaps = 41/434 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + DL I G + + E + + G ++LH ++P +
Sbjct: 59 RRAEELADETADL------FITGCMALAQGEEFAQADIDG---QVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TKHA G + S +E V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKHATGKIDSPPIEENVAKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREELAA 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V H +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GF
Sbjct: 227 VFAEHDELYDFLHAPVQSGSNDVLGDMRRQHQVDEYLEVVETFDDALEYWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P ETD D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E+++
Sbjct: 287 PTETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKRE 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V +A+ +G E R + + + E AD + Y QV+V + G G ++
Sbjct: 347 LVADAYAEMVG-ETREDVLVVEEGTADSVKC--RDSAYRQVIVQNASEHGLEPGDFVDLE 403
Query: 462 ITSVGRWSVFGEVI 475
IT+ FG+ I
Sbjct: 404 ITAHETMYAFGKPI 417
>gi|118478993|ref|YP_896144.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis str. Al Hakam]
gi|118418218|gb|ABK86637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus thuringiensis
str. Al Hakam]
Length = 524
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 440 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 491
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 492 PKSLIGQLVKVKVTDAKTWSLNGELVE 518
>gi|157692385|ref|YP_001486847.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pumilus SAFR-032]
gi|229890424|sp|A8FDH0.1|MIAB_BACP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157681143|gb|ABV62287.1| tRNA 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 508
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 220/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NT ++A + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K +KP L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERL 423
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+ + + E + L G+T V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 458 ALVKITSVGRWSVFGEVI 475
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|228922487|ref|ZP_04085789.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228940850|ref|ZP_04103410.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973771|ref|ZP_04134348.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980326|ref|ZP_04140637.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|384187776|ref|YP_005573672.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676093|ref|YP_006928464.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|423581983|ref|ZP_17558094.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|423635455|ref|ZP_17611108.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|452200154|ref|YP_007480235.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779431|gb|EEM27687.1| hypothetical protein bthur0002_34950 [Bacillus thuringiensis Bt407]
gi|228785923|gb|EEM33925.1| hypothetical protein bthur0003_35260 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818864|gb|EEM64929.1| hypothetical protein bthur0008_34910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228837201|gb|EEM82540.1| hypothetical protein bthur0011_34740 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|326941485|gb|AEA17381.1| tRNA 2-methylthioadenosine synthase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401212862|gb|EJR19603.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD014]
gi|401278206|gb|EJR84142.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD156]
gi|409175222|gb|AFV19527.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
thuringiensis Bt407]
gi|452105547|gb|AGG02487.1| tRNA-i(6)A37 methylthiotransferase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 509
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|229061375|ref|ZP_04198721.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
gi|228717914|gb|EEL69560.1| hypothetical protein bcere0026_34620 [Bacillus cereus AH603]
Length = 509
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 226/451 (50%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKK--PLV---VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ P + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPALIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ +G L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|403252391|ref|ZP_10918701.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
gi|402812404|gb|EJX26883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
EMP]
Length = 443
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/435 (30%), Positives = 223/435 (51%), Gaps = 27/435 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTL-- 110
Y+KTFGC N++DSE MAG L G+ EEAD+ +INT + A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 111 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 167
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPKVTEAVKRALQGEKVALFE 122
Query: 168 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 227 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
G +EV ++ AYG+D+ G +L LL +G + + P
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSNE 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPDVAISSD 296
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 402
II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKHYKDDVPHEEKVRRMQF 356
Query: 403 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L ++ + L G+ R+ + A +G+ + + + M+G A V
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRVIVEAQAKNGLFYGRDIRNKI-IAFEGEEWMIGRFADV 415
Query: 461 KITSVGRWSVFGEVI 475
KI + ++G+V+
Sbjct: 416 KIEKITAGPLYGKVV 430
>gi|423511805|ref|ZP_17488336.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
gi|402450066|gb|EJV81900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-1]
Length = 509
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 225/451 (49%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ +G L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|86607496|ref|YP_476259.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-3-3Ab]
gi|123504633|sp|Q2JQX6.1|MIAB_SYNJA RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86556038|gb|ABD00996.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-3-3Ab]
Length = 453
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 139/441 (31%), Positives = 217/441 (49%), Gaps = 31/441 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T Y TFGC N++DSE MAG L + GY ++ +AD+ L NT + D K S
Sbjct: 5 TYYTITFGCQMNRADSERMAGILESLGYVPAEDELQADLVLFNTCTIRDNAEQKVYSYLG 64
Query: 117 ------AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
K P L+VAGCV Q G R L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGERLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 222
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATEPVEIPE-DITKPRRDSRVTAW-INVIYGCNERCTYCIVPLVRGREQSRQPQAIRAE 182
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHSV---EGIERIRFATSHPRY 239
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E L IA P V H+P Q+GSDAVL M R YT +R ++ + + +P
Sbjct: 240 FTEEL--IATCAELPKVCEHFHIPFQAGSDAVLKRMRRGYTQERYRQLIQLIRQYMPEAT 297
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
I+ D I GFPGET+ F +T+ L+++ F ++ + + PRPGTPAA +VP R
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDFLNTAAYSPRPGTPAAEWPDQVPEEEKSDR 357
Query: 400 SRELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNML-G 455
+ L + A + G+V+ + + + +G T+G V L G
Sbjct: 358 LQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRIVFFDGDPEQLQG 417
Query: 456 TSALVKITSVGRWSVFGEVIK 476
+ V+IT+ +S+ GE++K
Sbjct: 418 SLVPVRITATRAFSLSGEIVK 438
>gi|229134580|ref|ZP_04263390.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|229168512|ref|ZP_04296235.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|423518409|ref|ZP_17494890.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|423592285|ref|ZP_17568316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
gi|228614918|gb|EEK72020.1| hypothetical protein bcere0007_34690 [Bacillus cereus AH621]
gi|228648841|gb|EEL04866.1| hypothetical protein bcere0014_34890 [Bacillus cereus BDRD-ST196]
gi|401161136|gb|EJQ68504.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuA2-4]
gi|401230527|gb|EJR37034.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD048]
Length = 509
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 226/451 (50%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ +G L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|423367759|ref|ZP_17345191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
gi|401083412|gb|EJP91670.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD142]
Length = 510
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DNHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 401 RELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ + Y+G I E+ +G L G+T+ V +
Sbjct: 425 QRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|229012956|ref|ZP_04170121.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|423661388|ref|ZP_17636557.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
gi|228748210|gb|EEL98070.1| hypothetical protein bmyco0001_33940 [Bacillus mycoides DSM 2048]
gi|401301429|gb|EJS07018.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM022]
Length = 509
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 225/451 (49%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ +G L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|373454824|ref|ZP_09546687.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
gi|371935520|gb|EHO63266.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister succinatiphilus
YIT 11850]
Length = 447
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 132/441 (29%), Positives = 218/441 (49%), Gaps = 33/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
Y T+GC N++D+E + GQL GY +N E+ADI ++NT Q+A + + K
Sbjct: 13 YTITYGCQMNENDTERINGQLEDLGYKPAENMEDADIVIMNTCSVRQNAEEKVYGKIGEI 72
Query: 118 KKP--------LVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVV-EETLKGHEV 164
KK L +AGC+ Q ++ K +E + I+ G I + +++ E +G +
Sbjct: 73 KKLKDKNPRMLLGIAGCMAQENKG-KLIERMPIIDFVIGPYHIHDLKDIISRENARGGHI 131
Query: 165 RLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
R D L VR+++ +PI GC CTYC + RG S T++ +
Sbjct: 132 VKTERNPHSVRDYSELRSVRKSRVFAWIPIMQGCNKFCTYCIVPYVRGREISRTIDDICR 191
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
++ + G KE+ L ++ +YG D G N L+ AI DG +R ++P
Sbjct: 192 EIKGLAETGYKEITLLGQNVNSYGLDFRNGTNFGDLIRAIDK---IDGIERVRYMTSHPR 248
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + I + P V +H+PVQ GS+ +L MNR YT+ F+ +V+ + + +P +
Sbjct: 249 DMTFDM--IDAMAASPKVVRHMHLPVQHGSNEMLKQMNRGYTIEHFKELVNYVRQKMPDV 306
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
+ TD+I GFPGET+E +T+ L+KE +F + + PR GTPAARM+ ++ +
Sbjct: 307 ALTTDLITGFPGETEEMHQETIKLLKEVRFDSAYTFIYSPRTGTPAARMENQIDDETKHR 366
Query: 399 RSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVP-STGNML 454
R +EL + L GMEG+ I I + + H G T +L P G +
Sbjct: 367 RLQELMDTQNEISLELNRGMEGKNYEIIIEGPSKQDVNHWFGRTSTNKMILFPYEEGIKV 426
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G + + K+ + W + GE++
Sbjct: 427 GDTRMAKVDTAQTWVLKGELL 447
>gi|387926953|ref|ZP_10129632.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
gi|387589097|gb|EIJ81417.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
methanolicus PB1]
Length = 514
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 215/443 (48%), Gaps = 42/443 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG GY TD E+A++ L+NT ++A + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMGLGYEPTDKPEDANVILLNTCAIRENAENKVFGEIGH 130
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K +KP L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 131 LKALKMEKPDLLLGVCGCMSQEELVVNKILKQYQYVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDIIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYRLGDLMEEISKIDIPRIRFTTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS VL M R+YT ++ +V + +P + +
Sbjct: 310 DDHLIEV--LAKGGNLMPHIHLPVQSGSTDVLKIMARKYTREEYLELVRKIKAAIPDVAL 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII G+P ET+E F +T++L +E F + + PR GTPAA+M+ VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETLSLYREVGFESAYTFIYSPREGTPAAKMQDNVPMEVKKERL 427
Query: 401 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ +A Y G I E+ +G L G+T+ V
Sbjct: 428 QRLNTLVNELSRDAMKKYQGQ--------IVEVLVEGESKNNPDVLAGYTRKNKLVNFTG 479
Query: 450 TGNMLGTSALVKITSVGRWSVFG 472
+ +G VKIT WS+ G
Sbjct: 480 PKSAIGKIVKVKITEAKTWSLNG 502
>gi|196034172|ref|ZP_03101582.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196044479|ref|ZP_03111714.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218904900|ref|YP_002452734.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus AH820]
gi|228916410|ref|ZP_04079977.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928822|ref|ZP_04091854.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935069|ref|ZP_04097899.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947493|ref|ZP_04109783.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123286|ref|ZP_04252490.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|229186011|ref|ZP_04313181.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|301055262|ref|YP_003793473.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|376267665|ref|YP_005120377.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|423550478|ref|ZP_17526805.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
gi|229890419|sp|B7JJ50.1|MIAB_BACC0 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890697|sp|A0RHE4.2|MIAB_BACAH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|195993246|gb|EDX57204.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus W]
gi|196024514|gb|EDX63186.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus 03BB108]
gi|218534759|gb|ACK87157.1| conserved hypothetical protein [Bacillus cereus AH820]
gi|228597430|gb|EEK55080.1| hypothetical protein bcere0004_35580 [Bacillus cereus BGSC 6E1]
gi|228660062|gb|EEL15698.1| hypothetical protein bcere0016_35750 [Bacillus cereus 95/8201]
gi|228812013|gb|EEM58344.1| hypothetical protein bthur0007_36210 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824639|gb|EEM70441.1| hypothetical protein bthur0009_35230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830629|gb|EEM76234.1| hypothetical protein bthur0010_35140 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843213|gb|EEM88294.1| hypothetical protein bthur0012_36250 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300377431|gb|ADK06335.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus biovar
anthracis str. CI]
gi|364513465|gb|AEW56864.1| tRNA-i(6)A37 methylthiotransferase [Bacillus cereus F837/76]
gi|401190094|gb|EJQ97144.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus ISP3191]
Length = 509
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|448464159|ref|ZP_21598382.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
gi|445815946|gb|EMA65863.1| MiaB-like tRNA modifying enzyme [Halorubrum kocurii JCM 14978]
Length = 440
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 125/370 (33%), Positives = 191/370 (51%), Gaps = 29/370 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ + LVV GC+ + E GV +I EV L G E +
Sbjct: 63 ELEDETAELVVTGCMALAQGETFEEAGVD----AEILHWDEVPSYVLNG-ECPTVTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+ EV
Sbjct: 171 EIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELVEV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GFP
Sbjct: 228 FADNEELYDFVHAPVQSGSDEVLEEMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ET+ D ++++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 288 TETEADHERSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKMEV 347
Query: 406 VFEAFTPYLG 415
V EA+ +G
Sbjct: 348 VGEAYESMVG 357
>gi|414153655|ref|ZP_11409977.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411454676|emb|CCO07881.1| putative AdoMet-dependent methyltransferase,UPF0004 family
[Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 435
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 213/441 (48%), Gaps = 31/441 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TL 110
T IY T GC NQ +S MA GY + D + AD+++INT + +
Sbjct: 3 TAAIY--TLGCKVNQYESAAMADLFRRAGYRVVDFEQPADVYIINTCTVTHLGDRKSRQM 60
Query: 111 IAKCKSAKKPLVVA--GCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
I + V+A GC Q S ++ E+ GV+ +VG R+V++VEE G +
Sbjct: 61 IRRAAKQNPAAVIAVTGCYAQTSPGEVLEIPGVNLVVGTADKSRIVQLVEE-YAGRTAPV 119
Query: 167 LHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ A D LP + K L I GC C YC +ARG + S E++V
Sbjct: 120 QAVADVMAKDCFDELPVPTEQGKSRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVVR 179
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+I G +E+ L+ GAYG+D+ +NL L+ + A LP G T LR+G P
Sbjct: 180 SATQLIQQGYQEIVLTGIHIGAYGQDLADPRINLGWLVERL-ARLP--GLTRLRLGSVEP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
I + L I V HP + LH+P+QSG D +L+ M R YT F ++D + + + G
Sbjct: 237 HDINQQL--ITAVANHPNICRHLHIPLQSGDDQILAGMQRRYTAGQFLELIDHIKQTIAG 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ I +D+I GFPGET+ F T+ + F +H+ ++ PR GTPAA M +VP AV +
Sbjct: 295 VAITSDVIVGFPGETEAHFQNTMQTVSRAAFASIHVFKYSPRKGTPAAAMPDQVPPAVKE 354
Query: 398 KRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNML 454
RS+ L ++ + + G+ + + + GH+ Y++V+ P+ ++
Sbjct: 355 DRSKRLIALGQRLAHDFAVRQVGKNLAVLVEQPCEKLTGFYEGHSDNYLKVVFPADESLR 414
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G V I G + G +I
Sbjct: 415 GKIVTVHIEEAGDAWLKGRII 435
>gi|423528366|ref|ZP_17504811.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
gi|402452029|gb|EJV83848.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus HuB1-1]
Length = 509
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|194014848|ref|ZP_03053465.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
gi|194013874|gb|EDW23439.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus pumilus ATCC
7061]
Length = 508
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 219/438 (50%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG A GY T+++E+A++ L+NT ++A + +
Sbjct: 67 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTNSTEDANVILLNTCAIRENAENKVFGELGH 126
Query: 113 -KCKSAKKP---LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K +KP L V GC+ Q R LK+ V ++ G I R+ E++ E E
Sbjct: 127 LKALKREKPDLILGVCGCMSQEESVVKRILKKHPFVDLIFGTHNIHRLPELLSECYLSKE 186
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LP+ R+ K + I GC CTYC + RG S + ++
Sbjct: 187 MVIEVWSKEGDVIENLPRARQGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPDEIIQ 246
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 247 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELRKIDIPRIRFTTSHPRDF 305
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +VL M R+Y + +V + E +P +
Sbjct: 306 DDHLIEV--LAKGGNLLDHIHLPVQSGSSSVLKLMARKYDRERYLDLVRKIKEAMPNASL 363
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 364 TTDIIVGFPNETDEQFEETLSLYREVEFDAAYTFIYSPREGTPAAKMQDNVPMHVKKERL 423
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+ + + E + L G+T V + +G
Sbjct: 424 QRLNALVNEISAKKMKEYEGQTVEVLVEGESKNNPEILAGYTSKSKLVNFKAPKEAIGNI 483
Query: 458 ALVKITSVGRWSVFGEVI 475
VKIT WS+ GE++
Sbjct: 484 VKVKITQAKTWSLDGEMV 501
>gi|423385277|ref|ZP_17362533.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
gi|401635333|gb|EJS53088.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BAG1X1-2]
Length = 509
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVKYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|423488895|ref|ZP_17465577.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
gi|423494620|ref|ZP_17471264.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|423498589|ref|ZP_17475206.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|401151681|gb|EJQ59127.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER057]
gi|401159247|gb|EJQ66632.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus CER074]
gi|402433250|gb|EJV65304.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus BtB2-4]
Length = 509
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 225/451 (49%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFTP-----YLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ +G L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKCYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|294791811|ref|ZP_06756959.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|294793672|ref|ZP_06758809.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|416999213|ref|ZP_11939882.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
gi|294455242|gb|EFG23614.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 3_1_44]
gi|294457041|gb|EFG25403.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella sp. 6_1_27]
gi|333977366|gb|EGL78225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula
ACS-068-V-Sch12]
Length = 437
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 218/443 (49%), Gaps = 32/443 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NT + +
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 111 --IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L++A GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 164 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLIDALDG-IP--GIERIRYMTSHP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P + +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM- 453
R + L V + L MEG+V I + + D G T G VL P ++
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLS 414
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G + I W +G ++K
Sbjct: 415 IGQTVPAHIDKAQTWVCYGSIVK 437
>gi|218898872|ref|YP_002447283.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus G9842]
gi|228902275|ref|ZP_04066435.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|228909596|ref|ZP_04073419.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228966715|ref|ZP_04127759.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402558900|ref|YP_006601624.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|423359242|ref|ZP_17336745.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|423561820|ref|ZP_17538096.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|434376830|ref|YP_006611474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
gi|229890420|sp|B7ITM4.1|MIAB_BACC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218543596|gb|ACK95990.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cereus G9842]
gi|228792814|gb|EEM40372.1| hypothetical protein bthur0004_35210 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228849885|gb|EEM94716.1| hypothetical protein bthur0013_37480 [Bacillus thuringiensis IBL
200]
gi|228857390|gb|EEN01890.1| hypothetical protein bthur0014_34530 [Bacillus thuringiensis IBL
4222]
gi|401085114|gb|EJP93360.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD022]
gi|401202077|gb|EJR08942.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus MSX-A1]
gi|401787552|gb|AFQ13591.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-771]
gi|401875387|gb|AFQ27554.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis HD-789]
Length = 509
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DVEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|347753703|ref|YP_004861268.1| MiaB family RNA modification protein [Bacillus coagulans 36D1]
gi|347586221|gb|AEP02488.1| RNA modification enzyme, MiaB family [Bacillus coagulans 36D1]
Length = 515
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 218/440 (49%), Gaps = 26/440 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG GY T+ E+AD+ L+NT ++A + + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTETVEDADVVLLNTCAIRENAENKVFGEIGH 130
Query: 117 AK-----KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--KG 161
K KP + V GC+ Q ++ L++ V +V G I R+ +++E K
Sbjct: 131 LKPLKTEKPDMLIGVCGCMSQEESVVNKILQKHPHVDMVFGTHNIHRLPHILKEAYMSKA 190
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ LPKVR+ + I GC CTYC + RG S E ++
Sbjct: 191 MVVEVWSKEGDVIESLPKVRKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D +L L ++ +L +R ++P
Sbjct: 251 EVRELAAKGYKEITLLGQNVNAYGKDFD-DLEYGLGDLMDDLRKINIPRIRFTTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+YT + +V + +P + +
Sbjct: 310 DDRLIEV--LAKKGNLVEHIHLPVQSGSSEILKIMGRKYTREQYLELVRKIKAAIPDVAL 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+TDII GFP ET+E F +T++L KE F + + PR GTPAARMK +P V K+R
Sbjct: 368 STDIIVGFPNETEEQFEETLSLYKEVGFETAYTFIYSPREGTPAARMKDNIPMEVKKERL 427
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + A++ EG+V + + E + L G+T+ V + +G
Sbjct: 428 QRLNELVNAYSKAAMEKYEGQVVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKSAIGKL 487
Query: 458 ALVKITSVGRWSVFGEVIKI 477
VKIT WS+ GE++ +
Sbjct: 488 VQVKITKAKTWSLDGEMVAV 507
>gi|257054056|ref|YP_003131889.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
gi|256692819|gb|ACV13156.1| MiaB-like tRNA modifying enzyme [Halorhabdus utahensis DSM 12940]
Length = 424
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 216/436 (49%), Gaps = 39/436 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKC--- 114
+++T+GC+ N+ +S+ + +L G+ D+ AD+ ++NT + ++ ++ +
Sbjct: 5 HIETYGCTSNRGESQAIERRLRQGGHYPVDDPSRADVAILNTCTVVEKTERNMLRRAAEL 64
Query: 115 -KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ LV+ GC+ L + E V E L EV R
Sbjct: 65 DEETPADLVITGCMA-----LAQGEAFDDAAVDA---------EILHWDEVAEYVRNGEC 110
Query: 174 ALDLPK--VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P V + ILPI GCL C+YC TK A G + S VE V + R ++ G
Sbjct: 111 PTATPDTDVVLDDVTGILPIARGCLSDCSYCITKQATGTIDSPPVEENVQKARELLDAGA 170
Query: 232 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
+E+ ++ +DTG YG + G LP LL I ELP G +R+GM NP + +E+A+
Sbjct: 171 RELRITGQDTGVYGLENGERKLPELLTRI-CELP--GEFRVRVGMANPKGVYGMHEELAD 227
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V H +Y+FLH PVQSGSD VL M R + +F+ +V E + +ATD I GF
Sbjct: 228 VFAEHDELYNFLHAPVQSGSDDVLVDMRRRHRTPEFKEIVAAFDERLEYWTLATDFIVGF 287
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409
P ETD DF Q+++L+++ + +V++++F RPGT AA + + + K+RS +T +
Sbjct: 288 PTETDADFQQSLDLLRDVEPEKVNVTRFSKRPGTDAAELDGLGGTIKKERSSAMTDLKMD 347
Query: 410 F--TPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNM---LGTSALVKI 462
+ M G + +T+ DG LVG+ + + QV +P +M LG V+I
Sbjct: 348 VVGAAHDAMVGEEHTVLLTQ---DGTEDSLVGYDEAHRQVAIPEAESMGLELGDFVDVEI 404
Query: 463 TSVGRWSVFGEVIKIL 478
T GE I+ +
Sbjct: 405 TGHNTVYALGEPIRAV 420
>gi|65321098|ref|ZP_00394057.1| COG0621: 2-methylthioadenine synthetase [Bacillus anthracis str.
A2012]
Length = 524
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 83 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 142
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 143 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 202
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 203 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 262
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 263 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 321
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 322 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 379
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 380 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 439
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 440 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 491
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G +K+T WS+ GE+++
Sbjct: 492 PKSLIGQLVKIKVTDAKTWSLNGELVE 518
>gi|15894568|ref|NP_347917.1| Fe-S oxidoreductase [Clostridium acetobutylicum ATCC 824]
gi|337736504|ref|YP_004635951.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
gi|384458011|ref|YP_005670431.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|15024215|gb|AAK79257.1|AE007641_3 Fe-S oxidoreductases [Clostridium acetobutylicum ATCC 824]
gi|325508700|gb|ADZ20336.1| Fe-S oxidoreductase [Clostridium acetobutylicum EA 2018]
gi|336292009|gb|AEI33143.1| Fe-S oxidoreductase [Clostridium acetobutylicum DSM 1731]
Length = 436
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 220/433 (50%), Gaps = 28/433 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC N +SE MA + G+ + DN E+AD ++INT + + +I++ + A
Sbjct: 7 TLGCRVNSYESEAMAEKFIKSGWEIVDNDEKADAYVINTCTVTNMGDRKSRQMISRARKA 66
Query: 118 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEVR-LLH 168
K V+A GC Q + E+EGV IV G + I V + +EE + V+ +
Sbjct: 67 NKDAVIAAVGCYSQVEPEKVAEIEGVDIVLGTKNKGDIIHYVNKFIEERNQIVNVKDVFT 126
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
KK L++ + + +K L I GC C+YC +ARG + S E ++G ++ +
Sbjct: 127 DKKFEDLNIDEYQ-DKTRAFLKIQDGCNRFCSYCLIPYARGGVCSKNPEKVIGEIKRLAE 185
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
G KE+ LS +YG D+ + L++ I DG +RIG P F E
Sbjct: 186 HGFKEIILSGIHIASYGDDLKGDWN-LISIIEKAEQIDGIERIRIGSIEPRFFDEDTISK 244
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+ ++ C + H+ +QSG L MNR+YT +++ +V L E + + I TD+I G
Sbjct: 245 IKNMKKMCPH--FHLSLQSGCTETLERMNRKYTAEEYKEIVYKLRENISDVSITTDVIVG 302
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-KRSRELTSVF 407
FPGETDE+F +T + +KE + ++H+ ++ PR GT AA MK + VK KRS EL +
Sbjct: 303 FPGETDEEFEKTYDFLKEIELAKMHVFKYSPREGTKAAAMKNQINGNVKDKRSAELIELD 362
Query: 408 EA-----FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ + +L E V ++ ++ + G+T Y++V+V S+ ++ VK+
Sbjct: 363 KINEKKFMSKFLDREMDV--LFEKKLEENEDLYEGYTPNYIKVVVKSSEDISRKILKVKL 420
Query: 463 TSVGRWSVFGEVI 475
T + + GE+I
Sbjct: 421 TEIQDEHLLGELI 433
>gi|229162708|ref|ZP_04290665.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
gi|228620590|gb|EEK77459.1| hypothetical protein bcere0009_34780 [Bacillus cereus R309803]
Length = 509
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNAEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|427727572|ref|YP_007073809.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
gi|427363491|gb|AFY46212.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Nostoc sp. PCC 7524]
Length = 454
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 220/448 (49%), Gaps = 40/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++ AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFCEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ + RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRTEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G +L + + V ++P G LR +
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERLRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRHY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+ F T+ L+ + F Q++ + + PRPGTPAA S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWSNQLSEE 361
Query: 396 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST 450
VK +R L +V +A +GR+E + + + D ++G T+G
Sbjct: 362 VKSDRLQRLNHLVNV-KAAERSQRYQGRIEEVLVEDQNPKDKTQVMGRTRGNRLTFFTGD 420
Query: 451 GNML-GTSALVKITSVGRWSVFGEVIKI 477
N L G VKIT V +S+ GE +++
Sbjct: 421 INELKGQLVKVKITEVRAFSLTGEPVEV 448
>gi|423598916|ref|ZP_17574916.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
gi|401237186|gb|EJR43643.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VD078]
Length = 509
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 225/451 (49%), Gaps = 50/451 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
HL ++ ++ H +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DNHLIDVLGKGGNLVEH------IHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V
Sbjct: 361 NAVLTTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVK 420
Query: 397 KKRSRELTSVFEAFTP-----YLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
K+R + L ++ + Y+G I E+ +G L G+T+ V
Sbjct: 421 KERLQRLNTLVNEYAVNKNKCYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLV 472
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
++ +++G VKIT WS+ GE++K
Sbjct: 473 NFVASKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|30263778|ref|NP_846155.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Ames]
gi|47529199|ref|YP_020548.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. 'Ames Ancestor']
gi|49186622|ref|YP_029874.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. Sterne]
gi|165872391|ref|ZP_02217026.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635860|ref|ZP_02394169.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167639855|ref|ZP_02398124.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687836|ref|ZP_02879050.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170706889|ref|ZP_02897347.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177652051|ref|ZP_02934597.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190568422|ref|ZP_03021329.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813320|ref|YP_002813329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. CDC 684]
gi|229602893|ref|YP_002868014.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. A0248]
gi|254683519|ref|ZP_05147379.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CNEVA-9066]
gi|254722040|ref|ZP_05183829.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A1055]
gi|254735812|ref|ZP_05193518.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Western North America USA6153]
gi|254739662|ref|ZP_05197356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Kruger B]
gi|254751058|ref|ZP_05203097.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Vollum]
gi|254759376|ref|ZP_05211401.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
Australia 94]
gi|386737595|ref|YP_006210776.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|421639527|ref|ZP_16080118.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
gi|81583703|sp|Q81WR0.1|MIAB_BACAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|30258422|gb|AAP27641.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47504347|gb|AAT33023.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180549|gb|AAT55925.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164711829|gb|EDR17371.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167512256|gb|EDR87633.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167528817|gb|EDR91575.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170128307|gb|EDS97176.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668152|gb|EDT18901.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172082420|gb|EDT67485.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190560426|gb|EDV14404.1| conserved hypothetical protein [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004716|gb|ACP14459.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
CDC 684]
gi|229267301|gb|ACQ48938.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus anthracis str.
A0248]
gi|384387447|gb|AFH85108.1| TRNA 2-methylthioadenosine synthase [Bacillus anthracis str. H9401]
gi|403393192|gb|EJY90437.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. BF1]
Length = 509
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G +K+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKIKVTDAKTWSLNGELVE 503
>gi|148269423|ref|YP_001243883.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
petrophila RKU-1]
gi|170288080|ref|YP_001738318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga sp.
RQ2]
gi|229891014|sp|A5IJD4.1|MIAB_THEP1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891017|sp|B1L8F3.1|MIAB_THESQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147734967|gb|ABQ46307.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga petrophila
RKU-1]
gi|170175583|gb|ACB08635.1| RNA modification enzyme, MiaB family [Thermotoga sp. RQ2]
Length = 443
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 226/437 (51%), Gaps = 27/437 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTL-- 110
Y+KTFGC N++DSE MAG L G+ EEAD+ +INT + A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 111 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 167
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 168 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
H + +LP++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-ELPRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 227 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSDE 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSD 296
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 402
II GFP ET+EDF +T++L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPYEEKVRRMQF 356
Query: 403 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L ++ + L +G+ R+ + A +G+ + + + M+G A V
Sbjct: 357 LMNLQKRINRKLNERYKGKTVRVIVEAQAKNGLFYGRDIRNKI-IAFEGEEWMIGRFADV 415
Query: 461 KITSVGRWSVFGEVIKI 477
KI + ++G+V+ I
Sbjct: 416 KIEKITAGPLYGKVVWI 432
>gi|448306889|ref|ZP_21496792.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
gi|445597400|gb|ELY51476.1| MiaB-like tRNA modifying protein [Natronorubrum bangense JCM 10635]
Length = 417
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 213/402 (52%), Gaps = 36/402 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGLDDADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + + DL I G + + E + + G ++LH ++P +
Sbjct: 59 RRAEELSEETADL------FITGCMALAQGEEFAQADIDG---QVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TKHA G + S ++E V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKHATGKIDSPSIEENVAKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+A V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEHICEI--EGDFRVRVGMANPKGVHGIREELAAV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
H +Y FLH PVQSGS+ VL M R++ +S++ VV+T + + ++TD I GFP
Sbjct: 228 FAEHDELYDFLHAPVQSGSNDVLGDMRRQHQVSEYLEVVETFDDALEYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
E+D D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E+++
Sbjct: 288 TESDHDHAQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
V +A+ +G E R + + + E AD + Y QV+V
Sbjct: 348 VADAYADMVG-ETREDVLVVEEGTADSVKC--RDSAYRQVIV 386
>gi|410729530|ref|ZP_11367607.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
gi|410595632|gb|EKQ50333.1| MiaB-like tRNA modifying enzyme [Clostridium sp. Maddingley
MBC34-26]
Length = 467
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 142/463 (30%), Positives = 225/463 (48%), Gaps = 36/463 (7%)
Query: 42 DNHLSKTGSLSPKIPGTET-----IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEA 96
DN +K LS K P T + T GC N ++E MA + GY +TD + A
Sbjct: 12 DNDKTKLEKLSNKEPAKNTEGKSLVAFATLGCRVNHYETEAMAEKFIREGYEVTDFNNFA 71
Query: 97 DIWLINTQSAMD-------TLIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GV 145
D+++INT S + +I++ + A K ++A GC Q ++ +EGV +V G
Sbjct: 72 DVYVINTCSVTNMSDKKSRQIISRARRANKNAIIAAVGCYSQVAPEEVSNIEGVDVVLGT 131
Query: 146 QQIDRVVEVVEETLKGHEVRL-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACT 200
+ +V V + + +L L K+ L++ + + +K L I GC C
Sbjct: 132 RNKGDIVYYVNKAKDEQKPQLMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCA 190
Query: 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260
YC + RG S + ++ ++ + G KE+ LS T +YG D+ N+ ++ ++
Sbjct: 191 YCLIPYTRGTTCSKDPQKVLDEIKKLSEHGFKEIILSGIHTASYGVDLEGNITLI--TLL 248
Query: 261 AELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE 319
E+ DG +RIG P F + E ++ C H+ +QSG DA L MNR
Sbjct: 249 EEIEKMDGIERVRIGSIEPSFFTNEVIEKMRKMKKLCPQ--FHLSLQSGCDATLKRMNRR 306
Query: 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 379
YT ++ V+ + E + I TD+I GFPGETDE+F++T +K+ K + HI +F P
Sbjct: 307 YTAKEYEDAVNRIRENLKDASITTDVIVGFPGETDEEFSETYEYLKKLKLTKTHIFKFSP 366
Query: 380 RPGTPAARMKKVPSAVVK-KRSR---ELTSVFEA-FTPYL-GMEGRVERIWITEIAADGI 433
R GT AA M VVK KRS+ EL + E F+ L G E ++ + E++
Sbjct: 367 RKGTKAADMPNQVDGVVKDKRSKALIELNAKNEGDFSKSLIGRE--LDVLVEQEVSNKPG 424
Query: 434 HLVGHTKGYVQVLVPS-TGNMLGTSALVKITSVGRWSVFGEVI 475
G+T+ YV+V + S NM+G L +I V G++I
Sbjct: 425 VFEGYTRNYVKVEIQSGNENMVGKIILCRIEEASGDYVIGKII 467
>gi|432332038|ref|YP_007250181.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
gi|432138747|gb|AGB03674.1| MiaB-like tRNA modifying enzyme [Methanoregula formicicum SMSP]
Length = 418
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 196/371 (52%), Gaps = 43/371 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAM----DTLIAKCKS 116
+ ++T+GC +N D+ + L G ++ D+ ++AD+ ++NT + + ++ + +
Sbjct: 23 VCIETYGCRYNFGDTAKLTEVLKHRGCSIADSVDDADVVIVNTCTVVGPTERRMLRRLSA 82
Query: 117 AK-KPLVVAGCVPQGSRD----LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
+ + L V GC+PQ ++ + + ++ +Q+ R V V G
Sbjct: 83 LRDRDLFVTGCMPQVQKEAILSVCDPGFIAPDAIQEWYRRVGTVAAGSVG---------- 132
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
I+ + GC G CTYC T+ ARG L S+ + + +V A G
Sbjct: 133 ----------------IVQLAQGCNGTCTYCITRQARGPLRSFPLHEVRRQVAAYAACGA 176
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ L+++D +YG+DIG++L LLN I P GS +R+GM NP +++ L I +
Sbjct: 177 AEIQLTAQDVSSYGKDIGLSLAGLLNDIGD---PPGSYCIRVGMMNPATVMDDLDAIIDA 233
Query: 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
++ FLH+PVQSGSD +L M R+YT+ DF ++ + P + + TD+I GFPG
Sbjct: 234 FSAERIFRFLHLPVQSGSDTILERMGRQYTVRDFCRIIAAFRKRYPEITVMTDMIAGFPG 293
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF- 410
ET+EDF+ +++LI+ + +V+++++ RP TP ++ K + +V K RSR + S E
Sbjct: 294 ETEEDFSASIDLIRRLRPNKVNVTRYSKRPFTPLSQEKDILDSVKKNRSRIMLSCSEQVY 353
Query: 411 ----TPYLGME 417
P+LG E
Sbjct: 354 AEVNRPWLGRE 364
>gi|452856306|ref|YP_007497989.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|452080566|emb|CCP22329.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 451
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 228/462 (49%), Gaps = 41/462 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R +L ++ + EG V I E DG+ VG+T Y++V+ T
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGTE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
+++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 413 DLIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|228986916|ref|ZP_04147043.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229157351|ref|ZP_04285429.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228626078|gb|EEK82827.1| hypothetical protein bcere0010_35340 [Bacillus cereus ATCC 4342]
gi|228772865|gb|EEM21304.1| hypothetical protein bthur0001_35910 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 509
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|319764320|ref|YP_004128257.1| tRNA-i(6)a37 thiotransferase enzyme miab [Alicycliphilus
denitrificans BC]
gi|330826382|ref|YP_004389685.1| MiaB family RNA modification protein [Alicycliphilus denitrificans
K601]
gi|317118881|gb|ADV01370.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Alicycliphilus
denitrificans BC]
gi|329311754|gb|AEB86169.1| RNA modification enzyme, MiaB family [Alicycliphilus denitrificans
K601]
Length = 449
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 144/442 (32%), Positives = 219/442 (49%), Gaps = 30/442 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
++ +++KTFGC N+ DS MA L +A Y TDN EEAD+ L NT Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSAKMADVLGAAQDYQSTDNPEEADLILFNTCSVREKAQEKVFS 61
Query: 110 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K+ V V GCV +G +K V +V G Q + R+ E++ K H+
Sbjct: 62 DLGRVKHLKEKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELLSAREKQHK 121
Query: 164 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMT 276
V + GVKEV L ++ AY +G + +LL VAE+P G +R +
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGTMGDTAEKADFALLLE-YVAEIP--GIERIRYTTS 238
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P L I R P + S LH+PVQ GSD +L AM R YT ++++ V L +
Sbjct: 239 HPNEFTPRL--IEAYARIPKLVSHLHLPVQHGSDRILMAMKRGYTAMEYKSTVRKLKAIR 296
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
PGM +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P V
Sbjct: 297 PGMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHDV 356
Query: 396 VKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGN 452
+R +EL +V + E G V+R+ + ++ D L+G T+ V P
Sbjct: 357 KLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDAGELMGRTECNRVVNFPGRER 416
Query: 453 MLGTSALVKITSVGRWSVFGEV 474
++G V+IT +++ GEV
Sbjct: 417 LIGQMIDVRITEARTYTLRGEV 438
>gi|365157922|ref|ZP_09354166.1| putative methylthiotransferase yqeV [Bacillus smithii 7_3_47FAA]
gi|363622332|gb|EHL73498.1| putative methylthiotransferase yqeV [Bacillus smithii 7_3_47FAA]
Length = 452
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 222/444 (50%), Gaps = 30/444 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY D +DI++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKGAGYERVDFDSISDIYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
K P + V GC Q S ++ E+ GV IV G Q ++++ VE+ K +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEVLEIPGVDIVIGTQDRTKILDFVEKYQKERQPINAV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 KNIMKNRVFEEMDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL +LL I ++ G LRI +
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGTDMKDYNLAMLLRDIEEQV--HGLKRLRISSIEASQLT 239
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + ++ + R V LH+P+QSGS+ VL M R+YT+ F ++ L E +PG+ +
Sbjct: 240 DEVIDVID--RSNIVVRHLHIPLQSGSNTVLKRMRRKYTMEFFAERLNRLREALPGLAVT 297
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
+D+I GFPGET+E+F +T N +KE+KF ++H+ + R GTPAARM+ ++ V +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFVKEHKFAELHVFPYSKRTGTPAARMENQIDEEVKNERVH 357
Query: 402 ELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
L ++ + EG V + E G++ G+T Y++V+ P++ +M+G
Sbjct: 358 RLITLSDQLAKEYASQFEGEVLEVIPEERYKEDPESGLY-EGYTDNYLKVVFPASEDMVG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILN 479
VKIT G + +++L+
Sbjct: 417 KLVKVKITKAGYPYNEAQFVRVLD 440
>gi|239826699|ref|YP_002949323.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Geobacillus
sp. WCH70]
gi|239806992|gb|ACS24057.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geobacillus sp. WCH70]
Length = 523
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 131/439 (29%), Positives = 219/439 (49%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
Y++T+GC N+ D+E MAG A GY TD E+A++ L+NT ++A + + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 114 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKPLKQNNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPYILHEAYMSKE 201
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPK RR + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEITLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIPRIRFTTSHPRDF 320
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + E +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKEAIPDVAL 378
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII GFP ET+E F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDNVPMEVKKERL 438
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V + +G
Sbjct: 439 QRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNFIGPKSAIGKL 498
Query: 458 ALVKITSVGRWSVFGEVIK 476
V+IT W++ GE+++
Sbjct: 499 VKVRITEAKTWTLNGEMVE 517
>gi|428305612|ref|YP_007142437.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
gi|428247147|gb|AFZ12927.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Crinalium epipsammum PCC
9333]
Length = 458
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 221/448 (49%), Gaps = 38/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ A + L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNNAKVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G L+ + + +V G Q +R+ E++E+ L G++V
Sbjct: 69 AKRKHEEPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKELLEQVLDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVSAW-VNVIYGCNERCTYCVVPSVRGVEQSRTPEAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 ELSHQGYKEITLLGQNIDAYGRDLPGVTKEGRHQHTLTDLLYYVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L + L P V H+P QSG + +L AM R YT +R ++DT+ +
Sbjct: 245 HPRYFTERLIQACAEL--PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I D I GFPGET++ F T+ LI++ F V+ + + PRPGTPAA + S V
Sbjct: 303 PDASITADAIVGFPGETEQQFENTLKLIEDISFDLVNTAAYSPRPGTPAAVWDQQLSEQV 362
Query: 397 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPST 450
K +R L S+ +A GR+E + + + D ++G T+G + S
Sbjct: 363 KSDRLQRINHLVSI-QAAERSQRYFGRIEEVLVEDQNQKDPTQVMGRTRGNRLTFFKGSI 421
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIKIL 478
+ G VKIT V +S+ GE + +L
Sbjct: 422 AQLKGQIVQVKITEVRPFSLTGEPLAVL 449
>gi|423669348|ref|ZP_17644377.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|423674524|ref|ZP_17649463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
gi|401298475|gb|EJS04075.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM034]
gi|401310075|gb|EJS15408.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
cereus VDM062]
Length = 509
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG + GY T ++EEAD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEEADVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLIIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIK 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G +E+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYREITLLGQNVNAYGKDFE-DIQYGLGDLMDELRKIDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL ++ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIDV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKETIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 401 RELTSVFEAF-----TPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ + Y+G I E+ +G L G+T+ V +
Sbjct: 425 QRLNTLVNEYGVNKNKRYIGQ--------IVEVLVEGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE++K
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVK 503
>gi|421507314|ref|ZP_15954234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
gi|401822448|gb|EJT21598.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
anthracis str. UR-1]
Length = 455
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 14 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 73
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 74 LKSLKRRNSDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 133
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 134 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 193
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 194 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 252
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 253 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 310
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 311 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 370
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 371 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 422
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G +K+T WS+ GE+++
Sbjct: 423 PKSLIGQLVKIKVTDAKTWSLNGELVE 449
>gi|385265541|ref|ZP_10043628.1| Radical SAM superfamily protein [Bacillus sp. 5B6]
gi|385150037|gb|EIF13974.1| Radical SAM superfamily protein [Bacillus sp. 5B6]
Length = 451
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 228/462 (49%), Gaps = 41/462 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R +L ++ + EG V I E DG+ VG+T Y++V+ T
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGTE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
+++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 413 DVIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|304438410|ref|ZP_07398350.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
gi|304368493|gb|EFM22178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. oral
taxon 149 str. 67H29BP]
Length = 437
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 210/445 (47%), Gaps = 51/445 (11%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC N +D+E M GQL A GY T+ + +AD+ LINT ++A D + K KK
Sbjct: 10 YGCQMNVADAERMEGQLQAAGYVRTEKTADADVILINTCCVRETAEDKVYGKIGEIKKVK 69
Query: 120 ---PLVV---AGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVE--------VVEETL 159
P ++ GC+ Q G ++ + V VQ++ R+V VV+ L
Sbjct: 70 EHHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAAERAPVVDVAL 129
Query: 160 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
H V DLP R +PI GC CTYC + RG S T E +
Sbjct: 130 DAHAVEE---------DLPIARGGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSRTPEEV 180
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V VR ADG +EV L ++ +YG+D G + LL + A +G +R ++P
Sbjct: 181 VAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRFMTSHP 237
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
I + L + + H C +H+PVQ GS+ +L AMNR YT+ +R + E +PG
Sbjct: 238 KDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVREALPG 295
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ TD+I GFPGET+EDF +T++ ++E ++ + + R GTPAA M +VP V
Sbjct: 296 ASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPDEVKH 355
Query: 398 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTG 451
R L +V + + EG R E+ +G G T+ VL P
Sbjct: 356 ARLERLMAVQNEISRAIN-EGL--RSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFPHGA 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIK 476
+G VKIT W + GEV++
Sbjct: 413 ERVGDFVQVKITQPQTWVLKGEVVR 437
>gi|311031621|ref|ZP_07709711.1| ribosomal protein S12 methylthiotransferase [Bacillus sp. m3-13]
Length = 454
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 136/461 (29%), Positives = 225/461 (48%), Gaps = 36/461 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + A Y T+ AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKANNYERTEFEGTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV +V G Q ++++ +E+ + +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDVVVGTQDRVKMLDYIEQFKQERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 GNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVVTQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N +LL + ++ +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRELDEKV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIA----EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ +++RH LH+P+QS S+ VL M R+YT+ F +D L E +PG
Sbjct: 240 DEVIEVLNNSDKIVRH------LHIPIQSASNTVLKRMRRKYTMEFFAERLDRLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ I +D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM +V +
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMTDQVDEEMKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEI---AADGIHLVGHTKGYVQVLVPSTGN 452
+R L ++ + E V + EI A D VG+T Y++V+ P+T
Sbjct: 354 ERVHRLIALSDQLAKEYASTFEEEVLEVIPEEIYKEAPDQGLYVGYTDNYLKVVFPATEE 413
Query: 453 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
M+G VKI G G+ +++L N R+SS
Sbjct: 414 MVGKLVKVKIAKAGYPYNEGQFVRVLEDAPRLEEENIRLSS 454
>gi|289549019|ref|YP_003474007.1| MiaB family RNA modification protein [Thermocrinis albus DSM 14484]
gi|289182636|gb|ADC89880.1| RNA modification enzyme, MiaB family [Thermocrinis albus DSM 14484]
Length = 437
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 146/441 (33%), Positives = 229/441 (51%), Gaps = 37/441 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
Y+KTFGC N +DSE + G L GY D EEAD+ LINT + + K S
Sbjct: 4 YIKTFGCQMNFNDSERIKGILHHMGYKPADTPEEADLILINTCTIREKPDQKVYSHLGEY 63
Query: 117 ----AKKPLV---VAGCVPQGSRDLKELEGVSIVGVQ----QIDRVVEVVEETLKGHEVR 165
K+P V V GC+ Q + +E +V + I + E++++ G+ R
Sbjct: 64 KKIKEKRPEVIIGVCGCLAQ-RMGWQLVEKAPVVDLMFSSFNIHHLPELIQQAQAGY--R 120
Query: 166 LLHRKKLPALD------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
+ + P D VR N + + + GC CTYC RG S ++ES+
Sbjct: 121 AIAILEEPPEDEDRMWEFKTVRDNAYCAYVTVMKGCDKHCTYCVVPKTRGRQRSRSLESI 180
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ VR ++ADGVKE+ L ++ A+G+DI ++ LL VAE+P G +R +P
Sbjct: 181 LEEVRWLVADGVKEIHLLGQNVTAWGQDINIHFSELLYR-VAEIP--GVERIRFTTGHPS 237
Query: 280 FILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E + K + ++ P + LH+PVQSGS+ +L M R YT ++ + L E VPG
Sbjct: 238 DMDERIAKAMGDI---PQICEHLHLPVQSGSNRILKLMERNYTKEEYLEKIHMLREYVPG 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ +TDII GFP ET+EDF +T++++++ +F QV ++ PRP TPAA M+ ++P V
Sbjct: 295 ITFSTDIIVGFPTETEEDFEETLDVLRKVRFEQVFSFKYSPRPDTPAAYMEGQIPDEVKT 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
R L S+ + + EG V+ + + E DG LVG T+ V V + +MLG
Sbjct: 355 DRMSRLLSLQKEILAEIARSYEGTVQEV-LLESWQDG-KLVGRTRTNRWVSVEGSEDMLG 412
Query: 456 TSALVKITSVGRWSVFGEVIK 476
+ V+IT +S+ G +++
Sbjct: 413 KTVRVRITRSQPFSMEGIILE 433
>gi|434394557|ref|YP_007129504.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
gi|428266398|gb|AFZ32344.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Gloeocapsa sp. PCC 7428]
Length = 453
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 224/448 (50%), Gaps = 44/448 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ +AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPYQADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G+++
Sbjct: 69 AKRKHEHPELTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLQDLLEQVFAGNQIVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KEV L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGRQGFKEVTLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GIERLRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L + AE+ P V H+P QSG + VL M+R YT +R ++DT+
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKQMSRGYTQEKYRRIIDTIRRY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVDDIGFDHLNTAAYSPRPGTPAAVWENQLSEE 361
Query: 396 VK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVP 448
VK +R L ++ E YL GR+E + + + D ++G T+G P
Sbjct: 362 VKSDRLQRLNHLVAIKASERSQRYL---GRIEEVLVEDQNPKDPAQVMGRTRGNRLTFFP 418
Query: 449 -STGNMLGTSALVKITSVGRWSVFGEVI 475
+ + G VKIT + +S+ GEV+
Sbjct: 419 GNIAELKGKLVQVKITEIRAFSLTGEVV 446
>gi|310659093|ref|YP_003936814.1| conserved protein of unknown function [[Clostridium] sticklandii]
gi|308825871|emb|CBH21909.1| conserved protein of unknown function [[Clostridium] sticklandii]
Length = 454
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 219/437 (50%), Gaps = 39/437 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ +++ M GY +TD AD+++INT + +I + K
Sbjct: 29 TLGCKVNQYETDAMEHLFRDAGYEVTDFESFADVYVINTCTVTSMSDKKSRQMIRRAKKH 88
Query: 118 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEE-TLKGHEVR---LLHR 169
+ ++A GC Q S D + +EGV++V G +++V VE+ +K H V ++ +
Sbjct: 89 NENAIIAVVGCYSQKSPDEVIAIEGVNLVMGTSDRNKIVTEVEKLDVKDHVVEVEDIMKQ 148
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ AL + + K L I GC C+YC + RG + S ++ ++ V+++ +
Sbjct: 149 RVFEALSIEETY-GKTRAFLKIQEGCDRFCSYCIIPYTRGPVRSRSINDIISEVKSLAKN 207
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI----LEHL 285
G KEV L+ +YG+D+G L++ I A DG +R P I L L
Sbjct: 208 GYKEVVLTGIHVASYGKDLGD--IRLIDVIKAINNIDGIHRIRTSSVEPLIITDDFLSEL 265
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
KEI + H H+ +QSGSD+VL MNR Y +++++ VD + ++ P I TDI
Sbjct: 266 KEIDKFCPH------FHLSLQSGSDSVLERMNRRYDKAEYKSAVDKIRKIYPDAAITTDI 319
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGE+D +F +T +++ ++HI +F PR GT AA M +V + RS L
Sbjct: 320 IVGFPGESDAEFEETRAYLEDINLYEMHIFKFSPREGTKAAAMDNQVKPEIKNHRSEVLI 379
Query: 405 SV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
+ E +G E V + E + +GI+ GHT YV+V V S +++G A
Sbjct: 380 ELAKKNKLEFEKKLVGKEAEV----LFESSENGIY-EGHTTNYVKVYVQSDLDLIGEIAR 434
Query: 460 VKITSVGRWSVFGEVIK 476
V I + +FG++I+
Sbjct: 435 VNIDRLENKKIFGKIIQ 451
>gi|49478367|ref|YP_037833.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52141716|ref|YP_085113.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
cereus E33L]
gi|196038441|ref|ZP_03105750.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|81395139|sp|Q6HF43.1|MIAB_BACHK RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81686624|sp|Q636Q4.1|MIAB_BACCZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|49329923|gb|AAT60569.1| conserved hypothetical protein, possible tRNA 2-methylthioadenine
synthetase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975185|gb|AAU16735.1| conserved hypothetical protein; possible tRNA 2-methylthioadenine
synthetase [Bacillus cereus E33L]
gi|196030849|gb|EDX69447.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
Length = 509
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 223/447 (49%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K + P + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKALKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNALVNKLAIEKNDRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+++G VK+T WS+ GE+++
Sbjct: 477 PKSLIGQLVKVKVTDAKTWSLNGELVE 503
>gi|410456328|ref|ZP_11310191.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
gi|409928242|gb|EKN65360.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
bataviensis LMG 21833]
Length = 514
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 139/451 (30%), Positives = 225/451 (49%), Gaps = 34/451 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG A GY TD +E+A++ L+NT ++A + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFLALGYEPTDRTEDANVILLNTCAIRENAENKVFGELGH 130
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K +KP + V GC+ Q ++ LK + V ++ G I R+ ++ E E
Sbjct: 131 LKALKLEKPDLLIGVCGCMSQEESVVNKILKTYQQVDMIFGTHNIHRLPNILHEAYMSKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR K + I GC CTYC RG S E ++
Sbjct: 191 MVVEVWSKEGDVIENLPKVRRGKIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEEIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + A G +EV L ++ AYG+D+ GVN L ++ +L +R ++P
Sbjct: 251 EVRQLAAQGYQEVTLLGQNVNAYGKDLEGVNYG--LGELMDDLRKIDIPRIRFTTSHPRD 308
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ L E+ + + + +H+PVQSGS VL M R+YT + +V + +P +
Sbjct: 309 FDDRLIEV--LAKGGNLMDHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPNVA 366
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ETDE F +T++L +E + + + PR GTPAA+M+ VP V K R
Sbjct: 367 LTTDIIVGYPNETDEQFEETMSLYREVGYELAYTFIYSPREGTPAAKMEDNVPMEVKKAR 426
Query: 400 SRELTSV-----FEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM 453
+ L ++ EA + EG++ + + E + L G+T V + +
Sbjct: 427 LQRLNALVNELSLEAMKKH---EGQILDVLVEGESKNNPDVLAGYTSRNKLVNFAAPKSS 483
Query: 454 LGTSALVKITSVGRWSVFGEVIKILNQVDDK 484
+G VKIT WS+ GE+++ L V+ K
Sbjct: 484 IGKIVKVKITEARTWSLNGEMVEELEPVEVK 514
>gi|375363075|ref|YP_005131114.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|384266153|ref|YP_005421860.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387899175|ref|YP_006329471.1| hypothetical protein MUS_2838 [Bacillus amyloliquefaciens Y2]
gi|451346251|ref|YP_007444882.1| hypothetical protein KSO_007520 [Bacillus amyloliquefaciens IT-45]
gi|371569069|emb|CCF05919.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|380499506|emb|CCG50544.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387173285|gb|AFJ62746.1| conserved hypothetical protein YqeV [Bacillus amyloliquefaciens Y2]
gi|449850009|gb|AGF27001.1| hypothetical protein KSO_007520 [Bacillus amyloliquefaciens IT-45]
Length = 451
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 228/462 (49%), Gaps = 41/462 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R +L ++ + EG V I E DG+ VG+T Y++V+ T
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEDGM-FVGYTDNYMKVVFKGTE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
+++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 413 DVIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|443478976|ref|ZP_21068653.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
gi|443015642|gb|ELS30506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena biceps PCC
7429]
Length = 453
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/447 (32%), Positives = 214/447 (47%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L GY T+ SEEAD+ L NT S D K S
Sbjct: 10 HIVTFGCQMNKADSERMAGVLEDMGYHSTEESEEADLILYNTCSIRDNAEQKVYSYLGRQ 69
Query: 117 AKKP-------LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 164
AK+ LVVAGCV Q R + EL+ V +G Q ++R+ ++E+ G++V
Sbjct: 70 AKRKRDNPNLTLVVAGCVAQQEGEALLRRVPELDLV--MGPQHVNRLGHLLEQVFNGNQV 127
Query: 165 RLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ D+ RRN V + I GC CTYC RG S T ES+ +
Sbjct: 128 AATEEAYIEE-DITTPRRNSSVAAWVNIIYGCNENCTYCIVPSVRGREQSRTPESIRQEI 186
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGM 275
+ A G KE+ L ++ AYGRD+ GV I ++ + +G +R
Sbjct: 187 EKLAAQGYKEITLLGQNIDAYGRDLPAGGIGAGVGGKITFTDLLYYVHDIEGIDRIRYAT 246
Query: 276 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
++P + L K AE+ P + H+P QSG + +L AM R YT +R +++ + E
Sbjct: 247 SHPRYFSSRLIKACAEL---PKICEHFHIPFQSGDNDILKAMARGYTHERYRRIIEDIRE 303
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
++P I D I FPGET+E F +TV L+ + F V+ + + PRPGTPAA S
Sbjct: 304 IMPDAAITADAIVAFPGETEEQFERTVQLVNDIGFDLVNTAAYSPRPGTPAAVWDDQLSE 363
Query: 395 VVKK-RSRELTSVF--EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST 450
VK R + L V A GR+E I I + + ++G T+ +T
Sbjct: 364 TVKSDRLQRLNHVVNQNAAERSQRYAGRIEEIMIEGTNHKNPLQIMGRTRTNRIAFTENT 423
Query: 451 -----GNMLGTSALVKITSVGRWSVFG 472
++G + +KIT V +S+ G
Sbjct: 424 TGQSLAELIGKTISIKITEVRPFSLTG 450
>gi|452974392|gb|EME74212.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
sonorensis L12]
Length = 509
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 216/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG A GY TD++E+A++ L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEPTDSTEDANVILLNTCAIRENAENKVFGEIGH 127
Query: 113 -KCKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K P L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKMNNPDVILGVCGCMSQEESVVNRILKKHPFVDLIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRHGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLAAEGYKEITLLGQNVNAYGKDFE-DMEYGLGHLMDELHKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS VL M R+Y + +V + + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYLELVGKIKKAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ET+E F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMRDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + EG+V + + E + L G+T+ V +G
Sbjct: 425 QRLNDLVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTRKNKLVNFKGPKEAIGQL 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VNVKIHQAKTWSLDGEMV 502
>gi|334117224|ref|ZP_08491316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
gi|333462044|gb|EGK90649.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcoleus vaginatus FGP-2]
Length = 447
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 220/448 (49%), Gaps = 42/448 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ EA + L NT + D + S
Sbjct: 9 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 68
Query: 117 ----AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
++P L+VAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V
Sbjct: 69 AHRKRQEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 129 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 187
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KEV L ++ AYGRD+ G N L + + V ++P G LR ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQHTLTDLLYFVQDVP--GVDRLRFATSH 245
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I D I GFPGET+ F +T+ LI++ F V+ + + PRPGTPAA + S V
Sbjct: 303 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEV 362
Query: 397 KKRSRE------LTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKG-YVQVLVP 448
K + T+ E Y GR E + + + D ++G T+G +
Sbjct: 363 KADRLQRINHVVTTTAMERSQRYF---GRTEEVLVEVQNLKDSTQVMGRTRGNRLTFFKG 419
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVIK 476
+ G VKIT + +S+ GE+++
Sbjct: 420 DIAELAGKIVRVKITDIRAFSLTGEMVE 447
>gi|257076152|ref|ZP_05570513.1| oxidoreductase [Ferroplasma acidarmanus fer1]
Length = 400
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 212/427 (49%), Gaps = 43/427 (10%)
Query: 61 IYMKTFGCSHNQSDSE-YMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCK 115
IY +++GC+ +S+S Y+ L + ++ EEAD+ LI T + D ++ +
Sbjct: 3 IYFESYGCTLQKSESSLYLNKLLKDENNQIVNSPEEADLSLIGTCVVIKHTEDRMVKRIS 62
Query: 116 SAKK---PLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
S K + V GC+ + + E V + LK E R + L
Sbjct: 63 SLSKVSGNVQVLGCLATVNGNTIESGNVQV----------------LKPREFRSFYEGDL 106
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
+++ ++ + +PIN GC G+C +C + ARG L S ++ +V +V + +K
Sbjct: 107 DGIEI----KSDIYDGIPINQGCTGSCNFCISHIARGKLLSRGIDKIVNQVNMELDRNIK 162
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ +SS DT AYG+DIG +L L+N I + D LR+GM P + L ++ +
Sbjct: 163 EIRISSLDTAAYGKDIGTDLAELVNRISS---IDRDFYLRVGMLEPRNTYDILDKLVDAY 219
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
RH V+ FLH+PVQS + VLSAMNREYT+ + V + P M IATDII G+ +
Sbjct: 220 RHDRVFKFLHLPVQSAENNVLSAMNREYTIEEAEAVWQKFHDAFPDMSIATDIILGYYND 279
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF----- 407
+ F +T+ +++Y +++++F PRP T + S ++K+ S E+ S+
Sbjct: 280 SRAGFEKTMKFLEKYNPDIINVTRFSPRPYTKDYNKTPLNSNLLKEWSNEIISLHREQME 339
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL-VKITSVG 466
+ YLG E E++ ITE +G +VG Y V++ GN S + I S G
Sbjct: 340 KKLDSYLGRE---EKVLITEKGKNGT-MVGRDINYRPVVLK--GNYEKYSEIKCTIVSHG 393
Query: 467 RWSVFGE 473
+ GE
Sbjct: 394 SNYLIGE 400
>gi|229031402|ref|ZP_04187403.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
gi|228729897|gb|EEL80876.1| hypothetical protein bcere0028_34560 [Bacillus cereus AH1271]
Length = 509
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 224/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D + L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DFEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 307 DDHLIEV--LGKGGNLVEHIHLPVQSGSTEMLKIMARKYSREHYLELVRKIKEAIPNAVF 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ET+E F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETNEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNNRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VK+T WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKVTEAKTWSLNGELVE 503
>gi|448319224|ref|ZP_21508729.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
gi|445596433|gb|ELY50519.1| MiaB-like tRNA modifying enzyme [Natronococcus jeotgali DSM 18795]
Length = 417
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/434 (31%), Positives = 221/434 (50%), Gaps = 41/434 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + DL I G + + E + G R+LH ++P +
Sbjct: 59 RRAEELSAETADL------YITGCMALAQGEEFAAADVDG---RVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G L LL I A DG +R+GM NP + +E+AE
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLEEICA---IDGEFRVRVGMANPKGVHGIREELAE 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y FLH PVQSGSD VL M R++ +S++ V++T E + ++TD I GF
Sbjct: 227 VFAENDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDEALEYWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P ETD D Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++
Sbjct: 287 PTETDRDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKRE 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V EA +G E R + + + E AD + Y QV+V + G G ++
Sbjct: 347 IVGEAHASMVG-EVREDCLVVEEGTADSVKC--RDSAYRQVIVQNASDHGIEPGDFVDLE 403
Query: 462 ITSVGRWSVFGEVI 475
+T+ FGE +
Sbjct: 404 VTAHETMYAFGEPV 417
>gi|15643593|ref|NP_228639.1| hypothetical protein TM0830 [Thermotoga maritima MSB8]
gi|418045000|ref|ZP_12683096.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
gi|14916854|sp|Q9WZT7.1|MTAB_THEMA RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
gi|4981362|gb|AAD35912.1|AE001750_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678082|gb|EHA61229.1| RNA modification enzyme, MiaB family [Thermotoga maritima MSB8]
Length = 434
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/434 (30%), Positives = 224/434 (51%), Gaps = 39/434 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI 111
+T+ ++TFGC NQ +SEYMA QL GY + + A +++N+ + + LI
Sbjct: 2 KTVRIETFGCKVNQYESEYMAEQLEKAGYVVLPDGNAA-YYIVNSCAVTKEVEKKVKRLI 60
Query: 112 AKCKSAKK--PLVVAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLH 168
++ K +++ GC Q S D K L ++G+ + +V+ + +L G + ++
Sbjct: 61 KSIRNRNKNAKIILTGCFAQLSPDEAKNLPVDMVLGIDEKKHIVDHIN-SLNGKQQVVVS 119
Query: 169 RKKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVR 224
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 120 EPGRPVYE--KVKGSFEDRTRSYIKVEDGCDNTCTYCAIRLARGTRIRSKPLEIFKEEFA 177
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ G KE+ ++ + G YG+D+G +L LL ++ ++P G +R+ N + +
Sbjct: 178 EMVMKGYKEIVITGVNLGKYGKDMGSSLAELLK-VIEKVP--GDYRVRLSSINVEDVNDE 234
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
+ + R+P + LH+ VQSGSD VL M R+Y +SDF VVD L + P I TD
Sbjct: 235 I--VKAFKRNPRLCPHLHISVQSGSDDVLKRMGRKYKISDFMRVVDKLRSIDPDFSITTD 292
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVV 396
II GFPGETD DF +T+ L+++ +F +VHI +F PRPGTPA+RM KK V+
Sbjct: 293 IIVGFPGETDADFQRTLELVEKVEFSRVHIFRFSPRPGTPASRMEGGVPESKKKERLDVL 352
Query: 397 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
K+++++++ + +G E +V W G+ L G+ + YV+ GN +G
Sbjct: 353 KEKAKDVSIRYRKRI--IGKERKVLAEWYV---MKGV-LSGYDEYYVK--HEFVGNRVGE 404
Query: 457 SALVKITSVGRWSV 470
V++ S+ V
Sbjct: 405 FHSVRVKSLSEEGV 418
>gi|160896962|ref|YP_001562544.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Delftia
acidovorans SPH-1]
gi|333916610|ref|YP_004490342.1| MiaB family RNA modification protein [Delftia sp. Cs1-4]
gi|229890511|sp|A9BUQ1.1|MIAB_DELAS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160362546|gb|ABX34159.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Delftia acidovorans
SPH-1]
gi|333746810|gb|AEF91987.1| RNA modification enzyme, MiaB family [Delftia sp. Cs1-4]
Length = 442
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 142/442 (32%), Positives = 220/442 (49%), Gaps = 28/442 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NT Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYESTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 110 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K+ V V GCV +G +K V +V G Q + R+ E++ H+
Sbjct: 62 DLGRYKHLKERGVLIGVGGCVASQEGEEIIKRAPYVDVVFGPQTLHRLPELLNARAAKHK 121
Query: 164 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGSSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLI 181
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 277
V + GVKEV L ++ AY +G I LL V+E+P G +R ++
Sbjct: 182 EVAGLADQGVKEVTLLGQNVNAYLGKMGDTAEIADFALLLEYVSEIP--GIERIRYTTSH 239
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P L I R P + S LH+PVQ GSD +L AM R YT ++++ + L + P
Sbjct: 240 PNEFTPRL--IEAYARLPKLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIRP 297
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
M +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P V
Sbjct: 298 EMAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHEVK 357
Query: 397 KKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM 453
+R +EL +V + E G V+R+ + ++ DG L+G T+ V P +
Sbjct: 358 LRRLQELQAVINNNIKDISDERVGTVQRLLVEGLSKRDGSELMGRTECNRVVNFPGNERL 417
Query: 454 LGTSALVKITSVGRWSVFGEVI 475
+G VKIT +++ GEV+
Sbjct: 418 IGQMIDVKITEARTFTLRGEVV 439
>gi|296333299|ref|ZP_06875752.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305675196|ref|YP_003866868.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296149497|gb|EFG90393.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305413440|gb|ADM38559.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 451
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 227/458 (49%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLG 455
L ++ + + E + I A VG+T Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI + G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILNAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|171464142|ref|YP_001798255.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|229890593|sp|B1XS06.1|MIAB_POLNS RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171193680|gb|ACB44641.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 448
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 136/448 (30%), Positives = 227/448 (50%), Gaps = 39/448 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINT----QSAMDTLIA--- 112
+Y+KTFGC N+ DS MA L A G +TD E+AD+ L+NT + A D + +
Sbjct: 4 LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDRPEDADVVLLNTCSIREKAEDKVFSDLG 63
Query: 113 ---KCKSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
+ K K L+ V GCV +G + + V +V G Q + R+ +++ K E
Sbjct: 64 RLRELKKTKPNLLIGVGGCVASQEGQQIVSHAPYVDVVFGPQTLHRLSDLIA---KRRET 120
Query: 165 RLLHRK-KLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
L P ++ LP R+ + + I GC C+YC + RG S + + +
Sbjct: 121 GLFQVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRSFDDV 180
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGM 275
+ V + + GVKE+ L ++ AY +G I LL + E+P G +R
Sbjct: 181 LTEVAGLASKGVKEIVLLGQNVNAYLGKMGDRQEIADFALLIEYIVEIP--GVERIRFTT 238
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
++P + L ++ + P + S LH+PVQ GSDA+LSAM R YT +F++++ + +
Sbjct: 239 SHPKEFTQRLIDV--YTKVPKLVSHLHLPVQHGSDAMLSAMKRGYTALEFKSIIRKMRAV 296
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 394
P + +++D I GFPGET+ DF + + +++E F F PRPGTPAA + P
Sbjct: 297 RPDLTLSSDFIVGFPGETEADFEKLLKMVEELNFDNSFCFIFSPRPGTPAANLHDDTPYE 356
Query: 395 VVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKG--YVQVLVPST 450
V KR + L ++ E+ + M G +ER+ I +A DGI+L G + + P+
Sbjct: 357 VKLKRLQTLLALVESQANQISQKMLGNIERVLIEGLAKDGINLQGRAENNRVIHFTAPAQ 416
Query: 451 G--NMLGTSALVKITSVGRWSVFGEVIK 476
N++G ++IT V +++ G++++
Sbjct: 417 NIENLIGQMVDIRITEVLNYTLRGKLVE 444
>gi|228992460|ref|ZP_04152388.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
gi|229000596|ref|ZP_04160136.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|229006018|ref|ZP_04163707.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228755217|gb|EEM04573.1| hypothetical protein bmyco0002_29390 [Bacillus mycoides Rock1-4]
gi|228759151|gb|EEM08157.1| hypothetical protein bmyco0003_51290 [Bacillus mycoides Rock3-17]
gi|228767281|gb|EEM15916.1| hypothetical protein bpmyx0001_32010 [Bacillus pseudomycoides DSM
12442]
Length = 509
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 223/444 (50%), Gaps = 36/444 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG + GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTTLGYEPTFSTEDADVILLNTCAIRENAENKVFGELGH 127
Query: 117 AKKPLV---------VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K PL V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LK-PLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSK 186
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 187 ATVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDII 246
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 247 NEIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRD 305
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 306 FDDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAV 363
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 364 LTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKER 423
Query: 400 SRELTSVFEAFTPYLGME-GRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGN 452
+ L ++ ++ ME + + I E+ DG L G+T+ V +
Sbjct: 424 LQRLNALVNEYS----MEKNKRYKGQIVEVLVDGESKNNPDVLAGYTRTNKLVNFVAPKY 479
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+G VK+T WS+ GE+++
Sbjct: 480 AIGQLVKVKVTEAKTWSLNGELVE 503
>gi|443631840|ref|ZP_21116020.1| hypothetical protein BSI_10910 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443347955|gb|ELS62012.1| hypothetical protein BSI_10910 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 451
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 225/458 (49%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLG 455
L ++ + + E + I A VG+T Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
+KI G G+ ++I V+D+I + R+SS
Sbjct: 417 KIVKIKIQKAGYPYNEGQFVRI---VEDEITEHMRLSS 451
>gi|228475022|ref|ZP_04059750.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
gi|228271007|gb|EEK12395.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
SK119]
Length = 514
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 218/445 (48%), Gaps = 26/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINT ++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + +G KE+ L ++ +YG+DI +L L+ ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLSDLLEDISKIDIPRVRFTTSHPWD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425
Query: 400 SRELTSVFEAFT--PYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGT 456
+ L ++ EG+V + + D L G+T+ V +G
Sbjct: 426 LQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKGPREAIGQ 485
Query: 457 SALVKITSVGRWSVFGEVIKILNQV 481
VK+ ++S+ GE + NQV
Sbjct: 486 LVDVKVKEAKQYSLNGEFLHFHNQV 510
>gi|157736509|ref|YP_001489192.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Arcobacter
butzleri RM4018]
gi|229890442|sp|A8ERE9.1|MIAB_ARCB4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|157698363|gb|ABV66523.1| tRNA-methylthiotransferase [Arcobacter butzleri RM4018]
Length = 436
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 215/443 (48%), Gaps = 30/443 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTQSAMDTLIAK 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INT S + + K
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 C----------KSAKKPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 160
K + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 161 GH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
G EV + + + + + NK+ + I+VGC CTYC RG S E +
Sbjct: 119 GAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMI 176
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V +VR + G EV L ++ +YGR + + + RI T+P
Sbjct: 177 VEQVRKSVEQGAVEVMLLGQNVNSYGRKFSDKREKYTFTKLLQDVSKIDGLERIRFTSPH 236
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP +
Sbjct: 237 PLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNL 296
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVK 397
+I TDII FPGET EDF T++++++ KF Q+ ++ PRPGT A + K++P +
Sbjct: 297 RITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGS 356
Query: 398 KRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + E YL + G I + + +G + G+T Y+QV +
Sbjct: 357 QR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNG-EVCGYTDNYLQVFAKGSDE 412
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
+LG VKIT V R S+ GEV+
Sbjct: 413 LLGKFVNVKITDVTRTSLKGEVV 435
>gi|425469267|ref|ZP_18848217.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
gi|389882035|emb|CCI37463.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9701]
Length = 446
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 217/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + E+ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEEVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
N + G VKIT V +S+ G +
Sbjct: 420 NLEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|302871702|ref|YP_003840338.1| tRNA-i(6)A37 thiotransferase protein MiaB [Caldicellulosiruptor
obsidiansis OB47]
gi|302574561|gb|ADL42352.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
obsidiansis OB47]
Length = 471
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/446 (29%), Positives = 205/446 (45%), Gaps = 51/446 (11%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------IAKC 114
T+GC N DSE +AG L+A GY T+N +EAD+ + NT S + + +
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYVETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 115 KSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 165
K K L+ V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVID 161
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ + + +P RR + I GC CTYC + RG S E ++ +
Sbjct: 162 ISEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCTYCIVPYVRGRERSRRPEEIIYEIEQ 221
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAI-----------VAELPPDGSTMLR 272
++ +GVKEV L ++ +YG+D+ G+ P LL + V P D S L
Sbjct: 222 LVQNGVKEVTLLGQNVNSYGKDLANGITFPKLLEKVNEIKGIERIRFVTSHPKDLSDELI 281
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+ M + + EH+ H+PVQSGS +L AMNR YT D+ +V+ L
Sbjct: 282 VAMRDLDKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLVEKL 325
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 391
+P + I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M +V
Sbjct: 326 KTNIPDIAITTDIIVGFPGETDEDFEDTLDVCQKVEFDSAYTFIYSKRRGTPAEKMPNQV 385
Query: 392 PSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 449
P + +R + L + E A M G+ I I + LVG T+ V V
Sbjct: 386 PEDIKHQRFQRLVKLVEEIALKKNKQMLGKTYEILIDSRSKRNNLLVGRTRTNKVVNVKC 445
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
+ VKI ++GEVI
Sbjct: 446 PDEYMFKFVNVKILEAAEHWLYGEVI 471
>gi|452975110|gb|EME74929.1| tRNA methylthiotransferase YqeV [Bacillus sonorensis L12]
Length = 451
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 134/462 (29%), Positives = 226/462 (48%), Gaps = 41/462 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERKDFESTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIKQYQEERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + + G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAQLLKELDSRVK--GLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS++VL M R+YT+ F + L + +PG
Sbjct: 240 DEVIEVLDKSDKIVRH------LHIPLQSGSNSVLKRMRRKYTMEFFADRLTKLKKALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + +D+I GFPGET+E+F +T N I+E+KF ++H+ + R GTPAARM +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNFIQEHKFSELHVFPYSKRTGTPAARMDDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R +L ++ + EG V I TE D ++ VG+T Y++V+ +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGDVLEIIPEEQFTETGEDNLY-VGYTDNYMKVVFEGSE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
M+G VKIT G G+ ++I DD + + R+SS
Sbjct: 413 EMIGQLVKVKITEAGYPYNKGQFVRI---ADDSVPESMRLSS 451
>gi|448298920|ref|ZP_21488934.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
gi|445588839|gb|ELY43079.1| MiaB-like tRNA modifying protein [Natronorubrum tibetense GA33]
Length = 417
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/432 (30%), Positives = 216/432 (50%), Gaps = 37/432 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ + +EAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVEGVDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFSKADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TKHA G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKHATGKIESPPIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEQICEL--EGEFRVRVGMANPKGVHGIREELADVF 228
Query: 293 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
+ +Y FLH PVQSGSD VL M R++ + ++ ++D E + ++TD I GFP
Sbjct: 229 AEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEIIDAFDEALDYWTLSTDFIVGFPT 288
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 406
ETD D Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++ V
Sbjct: 289 ETDHDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTLKKERSKEMSAAKRDIV 348
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKIT 463
EA+ +G E R + + + E AD + Y Q++V + G G +++T
Sbjct: 349 GEAYADMVG-ETREDVLVVEEGTADSLKC--RDSAYRQIIVQNATEHGLEPGDFVDLEVT 405
Query: 464 SVGRWSVFGEVI 475
+ FGE +
Sbjct: 406 AHETMYAFGEPV 417
>gi|159027937|emb|CAO87100.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 446
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 143/444 (32%), Positives = 217/444 (48%), Gaps = 42/444 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFG 472
N + GT VKIT V +S+ G
Sbjct: 420 NIEKLRGTFVKVKITEVRPFSLTG 443
>gi|332710909|ref|ZP_08430845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
gi|332350223|gb|EGJ29827.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Moorea producens 3L]
Length = 448
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 225/448 (50%), Gaps = 42/448 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++N EAD+ + NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDIGFQWSENPNEADLIVYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G L+ + V +V G Q +R+ +++++ G++ L
Sbjct: 69 AKRKHQQPDLTLVVAGCVAQQEGEALLRRVPEVDLVMGPQHANRLGDLLDQVFDGNQ--L 126
Query: 167 LHRKKLPAL-DLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ + + + D+ K RR+ + + I GC C+YC + RG S T E++ +
Sbjct: 127 VATEPIHIVEDITKPRRDSSISAWVNIIYGCNERCSYCVVPNVRGLEQSRTPEAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G + L + + V+ +P G LR +
Sbjct: 187 ELGRLGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVSNVP--GIERLRFATS 244
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + +E L L P V H+P QSG + +L AM R YT +R +++T+ + +
Sbjct: 245 HPRYFVERLIRACHEL--PEVCEHFHIPFQSGDNDILKAMARGYTHQKYRRIINTIRDYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA + S V
Sbjct: 303 PDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLSEEV 362
Query: 397 K----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPS 449
K +R L +V E YL GR+E + + + D ++G TKG
Sbjct: 363 KCDRLQRLNHLVAVKAAERSQRYL---GRIEEVLVEDQNPKDNTQVMGRTKGNRLTFFSG 419
Query: 450 TGNML-GTSALVKITSVGRWSVFGEVIK 476
N L G LVKIT +S+ GE ++
Sbjct: 420 DINHLKGELVLVKITEARAFSLTGERVE 447
>gi|422301887|ref|ZP_16389252.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
gi|389789024|emb|CCI14978.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9806]
Length = 446
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 217/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + VL AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
N + GT VKIT V +S+ G +
Sbjct: 420 NIEELRGTFVKVKITEVRPFSLTGVIF 446
>gi|428220347|ref|YP_007104517.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
gi|427993687|gb|AFY72382.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 7502]
Length = 453
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 214/446 (47%), Gaps = 38/446 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
++ T GC N++DSE MAG L GY+ TD ++EAD+ L NT S D K S
Sbjct: 11 HIVTLGCQMNKADSERMAGILETMGYSSTDEADEADLVLYNTCSIRDNAEQKVYSYLGRQ 70
Query: 118 -----KKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
K P LVVAGCV Q G L+ + + +V G Q ++R+ ++E+ G++V
Sbjct: 71 AKRKHKNPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHVNRLDHLLEQVFNGNQVSA 130
Query: 167 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ RRN + + I GC +CTYC RG S T ++++ V
Sbjct: 131 TESAYIEE-DITTPRRNSSITAWVNIIYGCNESCTYCIVPRVRGVEQSRTPDAILQEVNN 189
Query: 226 VIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
+ G KE+ L ++ AYGRD+ GV I L ++ + +G +R ++
Sbjct: 190 LSQQGYKEITLLGQNIDAYGRDLPPSNLGGGVGGKITLTDLLYYIHDVEGIERIRFATSH 249
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + L + L P V H+P QSG + +L AM R YT +R ++D + ++P
Sbjct: 250 PRYFSPRLIQACAEL--PKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDNIRAIMP 307
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
I D I FPGET+ F T+ L+ + F V+ + + PRPGTPAA S +K
Sbjct: 308 DASITADAIVAFPGETEAQFENTLRLVGDISFDLVNTAAYSPRPGTPAAIWTNQLSEEIK 367
Query: 398 -KRSRELTSVF-----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPS 449
R + L + E YL GR E I I I + L+G T+G + L +
Sbjct: 368 DDRLQRLNHLVNQKAAERSQRYL---GRTEEILIESINPKNPNQLMGRTRGNRITFLNET 424
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
+ N++ +KIT +S+ G +I
Sbjct: 425 SSNLIAQVVNLKITEARPFSLTGVLI 450
>gi|384176166|ref|YP_005557551.1| hypothetical protein I33_2627 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349595390|gb|AEP91577.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 451
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSQLDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLG 455
L ++ + + E + I A VG+T Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|383620560|ref|ZP_09946966.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|448697917|ref|ZP_21698795.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
gi|445781283|gb|EMA32144.1| MiaB-like tRNA modifying enzyme [Halobiforma lacisalsi AJ5]
Length = 417
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 221/433 (51%), Gaps = 39/433 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D EEAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA------- 174
A + + DL I G + + E E + G R+LH ++P
Sbjct: 59 RRAEELSDETADL------YITGCMALAQGEEFAEADVDG---RVLHWDEVPEAVTNGEC 109
Query: 175 -LDLPKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P V + V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 110 PTTTPDVEPILDGVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+ ++ +DTG YG D G L + E+ DG +R+GM NP + +E+A V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLERICEI--DGDFRVRVGMANPKGVHGIREELAAV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FADNEELYDFLHAPVQSGSNDVLGDMRRQHQVGEYLEVVETFDDRLDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ET++D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E+++
Sbjct: 288 TETEDDHRQSLELLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSALKREI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V E + +G R + + + E AD + Y Q++V + G G +++
Sbjct: 348 VSEVYESMVGQR-REDCLVVEEGTADSVKC--RDSAYRQIIVQNADDHGLEPGDFVDLEV 404
Query: 463 TSVGRWSVFGEVI 475
T+ FGE I
Sbjct: 405 TAHETMYAFGEPI 417
>gi|218248044|ref|YP_002373415.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
PCC 8801]
gi|229890509|sp|B7JZ48.1|MIAB_CYAP8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|218168522|gb|ACK67259.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 8801]
Length = 451
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 136/445 (30%), Positives = 219/445 (49%), Gaps = 38/445 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ +AD+ L NT + D K S
Sbjct: 14 HITTFGCQMNKADSERMAGILENMGFIWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 73
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 74 AKRKHENPDLTLIVAGCVAQQEGEQILRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVA 133
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC C+YC + RG S T E+++ +
Sbjct: 134 TEPIHIIE-DITKPRRDSTITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAILAEME 191
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G KEV L ++ AYGRD+ G + L + + G +R ++P
Sbjct: 192 LLGKQGYKEVTLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYTVHDVVGIERIRFATSHP 251
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + L C + H+P QSG + +L AM R YT +R ++D + + +P
Sbjct: 252 RYFTERLIAACQELSKVCEH--FHIPFQSGDNDILKAMKRGYTHEKYRQIIDKIRDYMPD 309
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPGTPAA S VK
Sbjct: 310 ASISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKS 369
Query: 399 -RSRELTSVF-----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
R + L + E YL GR+E + + + D ++G T+G
Sbjct: 370 DRLQRLNHLVAQKAAERSQRYL---GRIEEVLVEDQNPKDSTQVMGRTRGNRLTFFKGDI 426
Query: 452 NML-GTSALVKITSVGRWSVFGEVI 475
N L G VKIT V +S+ GE++
Sbjct: 427 NQLKGRLIKVKITEVRAFSLTGEIV 451
>gi|425453290|ref|ZP_18833048.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
gi|389801446|emb|CCI19386.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9807]
Length = 446
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 217/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRSEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
N + GT VKIT V +S+ G +
Sbjct: 420 NIEELRGTFVKVKITEVRPFSLTGAIF 446
>gi|428778989|ref|YP_007170775.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
gi|428693268|gb|AFZ49418.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Dactylococcopsis salina PCC 8305]
Length = 447
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/446 (31%), Positives = 220/446 (49%), Gaps = 40/446 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC------- 114
++ TFGC N++DSE MAG L A GY ++ AD+ + NT + D K
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEEDPYLADLVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 115 -----KSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
KSA LVVAGCV Q G + L+ + + +V G Q +R+ +++E+ +G++V +
Sbjct: 70 AKRKQKSADLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQV-V 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDISAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 276
T+ A G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 TLAAQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L K AE+ P V H+P QSG + +L AM+R YT +R +VD +
Sbjct: 246 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEILKAMSRGYTHEKYRRIVDKIRHY 302
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I FPGET+E F T+ L+ + +F Q++ + + PRPGTPAA + S
Sbjct: 303 LPDAAISADAIVAFPGETEEQFQNTLKLVDDVEFDQLNTAAYSPRPGTPAANWEDQLSDE 362
Query: 396 VK----KRSRELTSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTK-GYVQVLVPS 449
VK +R L S A ++ RVE + + + D ++G T+ +
Sbjct: 363 VKSDRLQRLNHLVSTSAAARSQRYLD-RVEEVLVEGQNPKDQSQVMGRTRTNRLTFFNGD 421
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
+ G VKIT V +S+ GE +
Sbjct: 422 IEQLYGKQVSVKITDVRAFSLTGEKV 447
>gi|212638682|ref|YP_002315202.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
gi|212560162|gb|ACJ33217.1| 2-methylthioadenine synthetase [Anoxybacillus flavithermus WK1]
Length = 467
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 229/466 (49%), Gaps = 41/466 (8%)
Query: 58 TETIYM-----KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIA 112
+E IYM T GC N ++E + GY D AD+++INT + +T
Sbjct: 13 SEVIYMPTVAFHTLGCKVNHYETEAIWQLFKQAGYERKDFESHADVYVINTCTVTNTGDK 72
Query: 113 KCKSAKKPLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
K + + V V GC Q S ++ + GV IV G Q +++E +E+ +
Sbjct: 73 KSRQVIRRAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYIEQFKQQ 132
Query: 162 HE----VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
+ VR ++ + LD+P ++ L I GC CT+C ARG + S
Sbjct: 133 RQPINGVRNIMKTRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDP 191
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGM 275
+ ++ + + ++ G KE+ L+ TG YG D+ N +LL + ++ G LRI
Sbjct: 192 KEVIRQAQQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRDMDEQV--KGLKRLRISS 249
Query: 276 TNPPFILEHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
I + E+ +VLR + LH+P+QSGS+AVL M R+YT F + L E
Sbjct: 250 IEASQITD---EVIDVLRQSDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLRE 306
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPS 393
+ P + + +D+I GFPGET+E+F +T I+E +F ++H+ + R GTPAARM +V
Sbjct: 307 VFPDLAVTSDVIVGFPGETEEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDE 366
Query: 394 AVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEI----AADGIHLVGHTKGYVQVLV 447
V +R L ++ + EG+V + E+ A G++ VG+T Y++V
Sbjct: 367 EVKNERVHRLITLSDQLAKEYASKFEGQVLEVIPEELYKEDPASGLY-VGYTDNYLKVKF 425
Query: 448 PSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
P+T M+G VKIT G GE +++++ + I R+SS
Sbjct: 426 PATEEMVGQLVKVKITKAGYPYNEGEFVRVIDNAHEAI----RLSS 467
>gi|16079597|ref|NP_390421.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus subtilis
subsp. subtilis str. 168]
gi|221310468|ref|ZP_03592315.1| hypothetical protein Bsubs1_13906 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314791|ref|ZP_03596596.1| hypothetical protein BsubsN3_13822 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319714|ref|ZP_03601008.1| hypothetical protein BsubsJ_13743 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323991|ref|ZP_03605285.1| hypothetical protein BsubsS_13877 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|418032280|ref|ZP_12670763.1| hypothetical protein BSSC8_17070 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|428280033|ref|YP_005561768.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
BEST195]
gi|430758699|ref|YP_007208916.1| hypothetical protein A7A1_3207 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449095037|ref|YP_007427528.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
XF-1]
gi|452915199|ref|ZP_21963825.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Bacillus subtilis MB73/2]
gi|1730990|sp|P54462.1|MTAB_BACSU RecName: Full=Threonylcarbamoyladenosine tRNA methylthiotransferase
MtaB; AltName: Full=tRNA-t(6)A37 methylthiotransferase
gi|1303812|dbj|BAA12468.1| YqeV [Bacillus subtilis]
gi|1890061|dbj|BAA12080.1| YqeV [Bacillus subtilis]
gi|2634989|emb|CAB14485.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Bacillus subtilis subsp. subtilis str. 168]
gi|291484990|dbj|BAI86065.1| hypothetical protein BSNT_03787 [Bacillus subtilis subsp. natto
BEST195]
gi|351471143|gb|EHA31264.1| hypothetical protein BSSC8_17070 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|407959789|dbj|BAM53029.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BEST7613]
gi|407965364|dbj|BAM58603.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BEST7003]
gi|430023219|gb|AGA23825.1| Hypothetical protein YqeV [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449028952|gb|AGE64191.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
XF-1]
gi|452115547|gb|EME05943.1| radical SAM methylthiotransferase, MiaB/RimO family protein
[Bacillus subtilis MB73/2]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLG 455
L ++ + + E + I A VG+T Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|350266745|ref|YP_004878052.1| hypothetical protein GYO_2811 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599632|gb|AEP87420.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLG 455
L ++ + + E + I A VG+T Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|308174331|ref|YP_003921036.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens DSM 7]
gi|307607195|emb|CBI43566.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens DSM 7]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 228/462 (49%), Gaps = 41/462 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R +L ++ + EG V I E DG+ VG+T Y++V+ T
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGTE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
+++G VKI G G+ +++ V++++ N R+SS
Sbjct: 413 DLIGKLVKVKIQKAGYPYNEGQFVRV---VEEEMTQNMRMSS 451
>gi|289582599|ref|YP_003481065.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|448281973|ref|ZP_21473266.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
gi|289532152|gb|ADD06503.1| MiaB-like tRNA modifying enzyme [Natrialba magadii ATCC 43099]
gi|445577602|gb|ELY32035.1| MiaB-like tRNA modifying protein [Natrialba magadii ATCC 43099]
Length = 417
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 208/402 (51%), Gaps = 36/402 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 STETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 292 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYDFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA MK + V K RS+E+++
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKREL 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
V EA+ +G E R + + + + AD + Y Q++V
Sbjct: 348 VGEAYAEMVG-ETREDVLVVEQGTADSVKC--RDAAYRQIIV 386
>gi|433444358|ref|ZP_20409277.1| RNA modification enzyme, MiaB family protein [Anoxybacillus
flavithermus TNO-09.006]
gi|432001650|gb|ELK22523.1| RNA modification enzyme, MiaB family protein [Anoxybacillus
flavithermus TNO-09.006]
Length = 450
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 226/459 (49%), Gaps = 36/459 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKQAGYERKDFESHADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
V V GC Q S ++ + GV IV G Q +++E +E+ + + V
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRSKILEYIEQFKQQRQPINGV 122
Query: 165 R-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R ++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 RNIMKTRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N +LL I ++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAMLLRDIDEQVK--GLKRLRISSIEASQIT 239
Query: 283 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ +VLR + LH+P+QSGS+AVL M R+YT F + L E+ P + +
Sbjct: 240 D---EVIDVLRQSDKIVRHLHIPLQSGSNAVLKRMRRKYTTEFFAERLARLREVFPDLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T I+E +F ++H+ + R GTPAARM +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYEFIREQRFSELHVFPYSKRTGTPAARMPDQVDEEVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNML 454
L ++ + EG+V + E+ + G++ VG+T Y++V P+T M+
Sbjct: 357 HRLIALSDQLAKEYASKFEGQVLEVIPEELYKEDPTSGLY-VGYTDNYLKVKFPATEEMV 415
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
G VKIT G GE +++++ + I R+SS
Sbjct: 416 GQLVKVKITKAGYPYNEGEFVRVIDDAHEAI----RLSS 450
>gi|321315467|ref|YP_004207754.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|386758424|ref|YP_006231640.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430758878|ref|YP_007209599.1| hypothetical protein A7A1_3386 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|320021741|gb|ADV96727.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis BSn5]
gi|384931706|gb|AFI28384.1| tRNA-i(6)A37 methylthiotransferase [Bacillus sp. JS]
gi|430023398|gb|AGA24004.1| Hypothetical protein YmcB [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 509
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|315635668|ref|ZP_07890931.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
gi|315479965|gb|EFU70635.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Arcobacter butzleri JV22]
Length = 436
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 215/443 (48%), Gaps = 30/443 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTQSAMDTLIAK 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INT S + + K
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 C----------KSAKKPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 160
K + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGQDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 161 GH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
G EV + + + + + NK+ + I+VGC CTYC RG S E +
Sbjct: 119 GAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMI 176
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V +VR + G EV L ++ +YGR + + + RI T+P
Sbjct: 177 VEQVRKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLERIRFTSPH 236
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP +
Sbjct: 237 PLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNL 296
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVK 397
+I TDII FPGET EDF T++++++ KF Q+ ++ PRPGT A + K++P +
Sbjct: 297 RITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGS 356
Query: 398 KRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + E YL + G I + + +G + G+T Y+QV +
Sbjct: 357 QR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNG-EVCGYTDNYLQVFAKGSDE 412
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
+LG VKIT V R S+ GEV+
Sbjct: 413 LLGKFVNVKITDVTRTSLKGEVV 435
>gi|282850159|ref|ZP_06259538.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
gi|282579652|gb|EFB85056.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Veillonella parvula ATCC
17745]
Length = 437
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 218/443 (49%), Gaps = 32/443 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NT + +
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 111 --IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L++A GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 164 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNSVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + TDII GFPGET+EDF T+ L+K+ ++ + + R GTPAA M ++P + +
Sbjct: 295 VVVTTDIIVGFPGETEEDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM- 453
R + L V + L MEG+V I + + D G T G VL P ++
Sbjct: 355 VRLQILMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLS 414
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G + I W +G ++K
Sbjct: 415 IGQTVPAHIDKAQTWVCYGSILK 437
>gi|229086321|ref|ZP_04218499.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
gi|228697016|gb|EEL49823.1| hypothetical protein bcere0022_29080 [Bacillus cereus Rock3-44]
Length = 509
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/448 (29%), Positives = 223/448 (49%), Gaps = 44/448 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y++T+GC N+ D+E MAG +A GY T ++++AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTKDADVILLNTCAIRENAENKVFGELGH 127
Query: 117 AKKPLV---------VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K PL V GC+ Q ++ +++ + V +V G I R+ ++++ + K
Sbjct: 128 LK-PLKQRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSK 186
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 187 ATVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDII 246
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+R + A+G KE+ L ++ AYG+D +L L ++ EL +R ++P
Sbjct: 247 NEIRHLAANGYKEITLLGQNVNAYGKDFE-DLEYGLGDLMDELRKIDIARVRFTTSHPRD 305
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+HL E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P
Sbjct: 306 FDDHLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPNAV 363
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 364 LTTDIIVGFPNETDEQFEETMSLYREVGFDSAFTFIYSPREGTPAAKMKDNVPMEVKKER 423
Query: 400 SRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVP 448
+ L ++ ++ Y+G I E+ DG L G+T+ V
Sbjct: 424 LQRLNALVNEYSIEKNKRYVGQ--------IVEVLVDGESKNNPDVLAGYTRANKLVNFV 475
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVIK 476
+ + + VK+T WS+ GE+++
Sbjct: 476 APKSAIAQLVKVKVTEAKTWSLNGELVE 503
>gi|410460472|ref|ZP_11314150.1| YqeV protein [Bacillus azotoformans LMG 9581]
gi|409927087|gb|EKN64233.1| YqeV protein [Bacillus azotoformans LMG 9581]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 227/455 (49%), Gaps = 38/455 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T+ T GC N ++E + GY D + AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEGIWQLFQEAGYERADFEKIADVYIINTCTVTNTGDKKSRQIIR 62
Query: 117 ---AKKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q + ++ ++ GV IV G Q ++++ V + K E
Sbjct: 63 RAIRKNPDAVVAVTGCYAQTAPAEILDIPGVDIVIGTQDRVKLLDYVRQYEKNREPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E +V +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRMPEDVVKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N +LL + ++ G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDLKDYNFAMLLRELDQKVV--GLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + ++ + ++RH LH+P+QSGSD+VL M R+YT + ++ L E +PG
Sbjct: 240 DEVIDVLDKSEKIVRH------LHIPLQSGSDSVLKRMRRKYTTEFYVDRLNRLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T NLI++ KF ++H+ + R GTPAARM+ +V +
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNLIRDNKFAELHVFPYSKRTGTPAARMEDQVDEEIKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTG 451
R L S+ + EG + + E +G VG+T Y++V+ P
Sbjct: 354 DRVHRLISLSDQLAKEYASNYEGDILEVIPEEQFTEGPDRTDLYVGYTDNYLKVVFPGKE 413
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKIL-NQVDDKI 485
+M+G VKIT VG GE + ++ +++++K+
Sbjct: 414 DMIGQIVKVKITQVGYPYSEGEFVSVVSDEIEEKV 448
>gi|448529140|ref|ZP_21620399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
gi|445709573|gb|ELZ61399.1| MiaB-like tRNA modifying enzyme [Halorubrum hochstenium ATCC
700873]
Length = 450
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 222/448 (49%), Gaps = 39/448 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 171
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AE
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAE 226
Query: 291 VLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAANEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P ET+ D +++++L+ E + ++++++F RPGT AA MK + + K+RS+ ++
Sbjct: 287 PTETEADHDRSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKAMSELKME 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM---LGTSALVK 461
V EA+ +G E + + E D + Y Q++V + + +G V+
Sbjct: 347 VVGEAYESMVGE--TFEVLVVEEGTGDSVKC--RDSAYRQIIVQNAADRGVEVGDFLTVE 402
Query: 462 ITSVGRWSVFGEVIKILNQVDDKIASNR 489
+T FG+ + ++ D A+ R
Sbjct: 403 VTGHNTVYAFGDPVAT-DEATDPDAAER 429
>gi|443319923|ref|ZP_21049066.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
gi|442790366|gb|ELR99956.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Gloeocapsa sp. PCC 73106]
Length = 451
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/451 (30%), Positives = 223/451 (49%), Gaps = 40/451 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC--- 114
T+ ++ TFGC N++DSE MAG L G+ +++ +A++ L NT + D K
Sbjct: 9 TQRYHITTFGCQMNKADSERMAGILEEMGFEWSEDPNQANLILYNTCTIRDNAEQKVYSY 68
Query: 115 --KSAKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+ AK+ L+VAGCV Q G + L+ + + +V G Q +++ ++E+ G+
Sbjct: 69 LGRQAKRKQTEPNLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANQLENLLEQVFAGN 128
Query: 163 EVRLLHRKKLPAL-DLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 219
+V + + + L D+ K RR V +NV GC CTYC + RG S T E++
Sbjct: 129 QV--VATEAIEILEDITKPRRESQVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAI 185
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRI 273
+ T+ G KE+ L ++ AYGRD+ G +L + + G +R
Sbjct: 186 RKEMETLGQQGYKEITLLGQNIDAYGRDLPGTTSTGRHLHTFTDLLHYVHDVQGIERIRF 245
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P + E L + L P V H+P QSG + +L AM R YT +R +++ +
Sbjct: 246 ATSHPRYFTERLIRACQEL--PKVCKHFHIPFQSGDNQILKAMARGYTREKYRGIIEKIR 303
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393
E +P I+ D+I GFPGET+ F +T+ L++E F V+ + + PRPGTPAA + + S
Sbjct: 304 EYMPDAAISADVIVGFPGETEAQFEKTLELVEEISFDLVNTAAYSPRPGTPAALLSEQLS 363
Query: 394 AVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVL 446
VK +R L S+ E YL GR+E + + E + H V G T+G
Sbjct: 364 ETVKSDRLQRLNHLVSIKATERRDRYL---GRIEEVLVEEKNSKNPHQVMGRTQGNSLTF 420
Query: 447 VPSTGNML-GTSALVKITSVGRWSVFGEVIK 476
L G VKIT +S+ G +++
Sbjct: 421 FDGEIEQLRGKLVKVKITETRAFSLTGVMVE 451
>gi|402775944|ref|YP_006629888.1| tRNA modification protein [Bacillus subtilis QB928]
gi|418033152|ref|ZP_12671629.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351469300|gb|EHA29476.1| hypothetical protein BSSC8_25730 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481125|gb|AFQ57634.1| Enzyme for ms(2)i(6)A formation for tRNAmodification [Bacillus
subtilis QB928]
Length = 520
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 375
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 435
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 436 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 495
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 496 VRVKIQQAKTWSLDGEMV 513
>gi|281411880|ref|YP_003345959.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
gi|281372983|gb|ADA66545.1| RNA modification enzyme, MiaB family [Thermotoga naphthophila
RKU-10]
Length = 443
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 225/437 (51%), Gaps = 27/437 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTL-- 110
Y+KTFGC N++DSE MAG L G+ EEAD+ +INT + A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 111 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 167
+ K K +K +V VAGCV + R+ L E ++G + + +V E V+ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVLKVTEAVKRALQGEKVALFE 122
Query: 168 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
H + DL ++R +K + I GC CTYC + RG S +E ++ VR +
Sbjct: 123 DHLDEYTH-DLSRIRSSKHHAWVTIIFGCDRFCTYCIVPYTRGREKSRPMEDILEEVREL 181
Query: 227 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEAS---KIEGIERIWFLTSYPTDFSDE 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ + R+P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IARNPKVAKSVHLPVQSGSNRILKLMNRSYTKEEYLALLERIRSKVPDVAISSD 296
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 402
II GFP ET+EDF +T++L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETIDLVEKAQFERLNLAIYSPRKGTVAWKHYKDEVPYEEKVRRMQF 356
Query: 403 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L ++ + L +G+ R+ + A +G+ + + + M+G A V
Sbjct: 357 LMNLQKRINRKLNERYKGKTVRVIVEAQAKNGLFYGRDIRNKI-IAFEGEEWMIGRFADV 415
Query: 461 KITSVGRWSVFGEVIKI 477
KI + ++G+V+ I
Sbjct: 416 KIEKITAGPLYGKVVWI 432
>gi|418620502|ref|ZP_13183306.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
gi|374822632|gb|EHR86652.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
VCU122]
Length = 514
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 217/445 (48%), Gaps = 26/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINT ++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425
Query: 400 SRELTSVFEAFT--PYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGT 456
+ L ++ EG+V + + D L G+T+ V +G
Sbjct: 426 LQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKGPREAIGQ 485
Query: 457 SALVKITSVGRWSVFGEVIKILNQV 481
VK+ ++S+ GE + NQV
Sbjct: 486 LVDVKVKEAKQYSLNGEFLHFHNQV 510
>gi|16078764|ref|NP_389583.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. subtilis str. 168]
gi|221309576|ref|ZP_03591423.1| hypothetical protein Bsubs1_09356 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313900|ref|ZP_03595705.1| hypothetical protein BsubsN3_09287 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318823|ref|ZP_03600117.1| hypothetical protein BsubsJ_09216 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323095|ref|ZP_03604389.1| hypothetical protein BsubsS_09327 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|452913965|ref|ZP_21962592.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
gi|6226482|sp|O31778.1|MIAB_BACSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2634073|emb|CAB13574.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
subtilis subsp. subtilis str. 168]
gi|407959107|dbj|BAM52347.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Synechocystis
sp. PCC 6803]
gi|407964684|dbj|BAM57923.1| (dimethylallyl)adenosine tRNAmethylthiotransferase [Bacillus
subtilis BEST7003]
gi|452116385|gb|EME06780.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis MB73/2]
Length = 509
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/438 (30%), Positives = 218/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|257784577|ref|YP_003179794.1| MiaB family RNA modification protein [Atopobium parvulum DSM 20469]
gi|257473084|gb|ACV51203.1| RNA modification enzyme, MiaB family [Atopobium parvulum DSM 20469]
Length = 455
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/371 (31%), Positives = 190/371 (51%), Gaps = 29/371 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC 114
+T ++KTFGC N D+E ++G L A G ++++ADI + T ++A L +
Sbjct: 10 KTYHIKTFGCQMNLHDTERVSGLLEACGCNEVSDTDDADIVIFMTCSVRENADQRLYGQA 69
Query: 115 K---------SAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
S K+ + + GC+ Q G + +++ V +V G + + ++ +G
Sbjct: 70 SAMVSAPTPPSGKRIVAIGGCIAQRDGEKLREKVPAVDVVFGTSALASLPALLTSAFRGE 129
Query: 163 EVRLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
R+ K + DLP R ++ +PI GC CTYC + RG S T E+
Sbjct: 130 NDRVAVDISEEGKGFSTDLPSNRAQQYHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 276
++G ++ADGV+E+ L ++ +YGRD+ LL A+ G +R +
Sbjct: 190 VIGECERLVADGVREITLLGQNVNSYGRDLYGKPRFAELLRAV----GQTGVERIRFTSS 245
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
NP + + + IA + P V LH+ VQSGS VL MNR YT ++ VV L +
Sbjct: 246 NPKDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRVLKKMNRSYTREEYLDVVSRLRAAI 303
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
PG+ ++TDII GFPGET+EDF +T++L+KE + + + RPGTPAA+ + P V
Sbjct: 304 PGLALSTDIIVGFPGETEEDFEETLSLVKEAGYSSAYTFIYSKRPGTPAAKYEDNTPHEV 363
Query: 396 VKKRSRELTSV 406
+++R L +
Sbjct: 364 IQERFDRLAEL 374
>gi|17228807|ref|NP_485355.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Nostoc sp. PCC
7120]
gi|81772425|sp|Q8YXA3.1|MIAB_NOSS1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|17130659|dbj|BAB73269.1| alr1312 [Nostoc sp. PCC 7120]
Length = 454
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 220/448 (49%), Gaps = 40/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKFSEDPNNADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 129 TEAVHIME-DITQARRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAVRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G +L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTFTDLLYYVHDVP--GVERIRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNQLLKAMARGYTQEKYRRIIDTIRRY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWENQLSEE 361
Query: 396 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPS 449
VK +R L +V A M GR+E + + E D ++G T G +
Sbjct: 362 VKSDRLQRLNHLVNVKAAERSQRYM-GRIEEVLVEEQNPKDQTQVMGRTGGNRLTFFKGD 420
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIKI 477
+ G +VKI V +S+ GE I++
Sbjct: 421 IHELKGQLVMVKINEVRAFSLTGEPIEM 448
>gi|448238779|ref|YP_007402837.1| tRNA methylthiotransferase [Geobacillus sp. GHH01]
gi|445207621|gb|AGE23086.1| tRNA methylthiotransferase [Geobacillus sp. GHH01]
Length = 449
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 224/459 (48%), Gaps = 37/459 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
V V GC Q S ++ + GV IV G Q +++E +E+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILEYIEQFQRERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
R ++A G KE+ L+ TG YG D+ N LL + ++P G LRI I
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLRRLRISSIEASQIT 239
Query: 283 EH----LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ LK +++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P
Sbjct: 240 DEVIDVLKRSEKIVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPE 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + +D+I GFPGET+++F +T N I+E +F ++H+ + R GTPAARM ++
Sbjct: 294 LAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKH 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNML 454
R R L ++ + EG+V + E + L VG+T Y++V P+T M+
Sbjct: 354 DRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMV 413
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
G VKIT G GE +++ V D++A + + SS
Sbjct: 414 GELVKVKITKAGYPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|126459773|ref|YP_001056051.1| RNA modification protein [Pyrobaculum calidifontis JCM 11548]
gi|126249494|gb|ABO08585.1| RNA modification enzyme, MiaB family [Pyrobaculum calidifontis JCM
11548]
Length = 440
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/441 (31%), Positives = 225/441 (51%), Gaps = 57/441 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKC 114
Y++ FGC ++D+E + +L G E+AD+ L+ T + + I +
Sbjct: 5 YVEAFGCWLAKADAEVIRQRL---GLVPVARPEDADVILVYTCAVREDGEVRQLARIREL 61
Query: 115 KSAKKPLVVAGCV----PQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ ++VAGC+ P + L ++ Q+ E + E+R+L R
Sbjct: 62 AGLGREMIVAGCLARLRPHTVKSLAP--HAELIYPSQV--------EGGREREMRVLPRF 111
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVI 227
+ V ++P+ VGCLG CT+C TK+ RG G S + ++ V+ +
Sbjct: 112 E-----------GGLVYVVPLQVGCLGNCTFCATKYTRGGAGYVKSADPDEVIRHVKKAV 160
Query: 228 ADGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
G +E++L+ +D YG D G LP LL ++ E+ DG +RIGM+ P
Sbjct: 161 EGGAREIYLTGQDVITYGFDARWRSGWTLPDLLERLLREV--DGEYRVRIGMSEPWVFER 218
Query: 284 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-PGMQI 341
+I +++ R VY + H+PVQSGSD VL AM R YT+ +++ ++ + ++ + I
Sbjct: 219 FADQILDIVKRDRRVYRYFHLPVQSGSDRVLKAMGRRYTVDEYKELIRKIRRVLGEPVFI 278
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
ATDII GFPGE EDF TV L++E +F +VH+++F PRP T AA M ++VP A K+RS
Sbjct: 279 ATDIIVGFPGEEWEDFLATVKLVEELQFDKVHVARFSPRPFTEAAVMPRQVPDAEKKRRS 338
Query: 401 RELTSVFEAFTPYLGMEGRV---ERIWITEIAADGIHLVGHTKGYVQVLV---PSTGNML 454
+ L+ V +L RV + + ITE+ D +VG Y QV+V P G +L
Sbjct: 339 KILSEV-ALRVAHLRNGARVGSRDVVLITEV--DHGLVVGRAGDYRQVVVKRGPGDG-LL 394
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G V + G ++G+VI
Sbjct: 395 GQFVEVVVAGAGPVYLYGDVI 415
>gi|126700065|ref|YP_001088962.1| MiaB-like tRNA modifying enzyme [Clostridium difficile 630]
gi|254976042|ref|ZP_05272514.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-66c26]
gi|255093430|ref|ZP_05322908.1| putative radical SAM superfamily protein [Clostridium difficile CIP
107932]
gi|255101608|ref|ZP_05330585.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-63q42]
gi|255307477|ref|ZP_05351648.1| putative radical SAM superfamily protein [Clostridium difficile
ATCC 43255]
gi|255315175|ref|ZP_05356758.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-76w55]
gi|255517844|ref|ZP_05385520.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-97b34]
gi|255650960|ref|ZP_05397862.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-37x79]
gi|260684029|ref|YP_003215314.1| radical SAM protein [Clostridium difficile CD196]
gi|260687689|ref|YP_003218823.1| radical SAM protein [Clostridium difficile R20291]
gi|306520839|ref|ZP_07407186.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-32g58]
gi|384361672|ref|YP_006199524.1| radical SAM protein [Clostridium difficile BI1]
gi|423092477|ref|ZP_17080281.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
gi|115251502|emb|CAJ69335.1| putative MiaB-like tRNA modifying enzyme [Clostridium difficile
630]
gi|260210192|emb|CBA64398.1| putative radical SAM superfamily protein [Clostridium difficile
CD196]
gi|260213706|emb|CBE05587.1| putative radical SAM superfamily protein [Clostridium difficile
R20291]
gi|357553979|gb|EHJ35715.1| tRNA methylthiotransferase YqeV [Clostridium difficile 70-100-2010]
Length = 432
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/435 (30%), Positives = 212/435 (48%), Gaps = 40/435 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTLIAKCK 115
T GC NQ ++E M GY ++ E AD+++INT +S K K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 116 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ + V GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 174 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
D+I GFPGET+E+F +T +KE + Q+HI ++ PR GTPAA M+ +V + RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 403 LTSV----FEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L ++ F F T ++G E V + E +G G T Y++V+V S N+ G
Sbjct: 359 LLNLSKVNFNKFATKFIGRELDV----LFEQNIEGNKYEGLTSNYIRVVVESDKNIQGQI 414
Query: 458 ALVKITSVGRWSVFG 472
VKI V V G
Sbjct: 415 LKVKINDVKDEYVEG 429
>gi|291436867|ref|ZP_06576257.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
gi|291339762|gb|EFE66718.1| RNA modification enzyme [Streptomyces ghanaensis ATCC 14672]
Length = 505
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 191/380 (50%), Gaps = 23/380 (6%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTQSAMDT 109
S + GT T ++T+GC N DSE +AG L GY A + +AD+ + NT + +
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66
Query: 110 LIAKC---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 154
K K A++P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKARRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 155 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 212
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 272
++ + ++A+GV E+ L ++ AYG DIG + + A DG +R
Sbjct: 187 DRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGRIDGLERVR 245
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+P + + IA + P V LH+P+QSGSDAVL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAVLKAMRRSYRQERYLGIIEKV 303
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 391
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 392 PSAVVKKRSRELTSVFEAFT 411
P VV++R L ++ E +
Sbjct: 364 PKKVVQERYERLVALQEEIS 383
>gi|269797930|ref|YP_003311830.1| MiaB family RNA modification protein [Veillonella parvula DSM 2008]
gi|269094559|gb|ACZ24550.1| RNA modification enzyme, MiaB family [Veillonella parvula DSM 2008]
Length = 437
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 131/443 (29%), Positives = 218/443 (49%), Gaps = 32/443 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T+GC N +DSE ++ QL + GY T+N E AD+ L+NT + +
Sbjct: 2 KSYYIYTYGCQMNTADSERLSHQLESVGYIPTENVETADLILLNTCAVRENAETKVYGRI 61
Query: 111 --IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K L++A GC+ Q ++ K + IV G I + E++EE GH
Sbjct: 62 GELKRLKRNNKNLIIAVTGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIEEVQHGHT 121
Query: 164 VRL---LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ + LP L+ F +PI GC CTYC H RG S VE++V
Sbjct: 122 HQISVDMDNTVLPELEAKP--NGSFYAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIV 179
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
V + G KE+ L ++ +YG D G + L++A+ +P G +R ++P
Sbjct: 180 KEVTDLGVKGFKEITLLGQNVNSYGLDFKDGTDFGTLVDALDG-IP--GIERIRYMTSHP 236
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + I + R + + LH+P+QSGS+ +L MNR YT+ ++ ++ E +
Sbjct: 237 QDMSKSM--IDALGRSSNIVTHLHLPIQSGSNRILKKMNRHYTVEHYKELLSYCREKIKD 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + TDII GFPGET++DF T+ L+K+ ++ + + R GTPAA M ++P + +
Sbjct: 295 VVVTTDIIVGFPGETEDDFQATLQLLKDVRYDMAYTFIYSKRSGTPAATMDDQIPEEIKR 354
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNM- 453
R + L V + L MEG+V I + + D G T G VL P ++
Sbjct: 355 VRLQTLMDVQNEISYELNKPMEGQVFDIIVEGPSPRDEDMWFGRTSGNKMVLFPKDDSLS 414
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
+G + I W +G ++K
Sbjct: 415 IGQTVPAHIDKAQTWVCYGSILK 437
>gi|294496305|ref|YP_003542798.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
gi|292667304|gb|ADE37153.1| MiaB-like tRNA modifying enzyme [Methanohalophilus mahii DSM 5219]
Length = 406
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 203/398 (51%), Gaps = 27/398 (6%)
Query: 85 FGYALTDNSEEADIWLINTQSAMDT----LIAKCKS---AKKPLVVAGCVPQGSRD--LK 135
G+ L + EA + + NT + DT ++ K K + ++V GC+PQ D L+
Sbjct: 3 LGHRLV-SEREAKVIICNTCTVKDTTEQKILHKIKEWGLQGREVIVTGCMPQVQLDEILE 61
Query: 136 ELEGVSIVGVQQIDR---VVEVVEETLKGHEVR---LLHRKKLPALDLPKVRRNKFVEIL 189
V ++G+ + + ++ V E L+G+ +R + L++P+ R + + I
Sbjct: 62 NNPEVHVLGMNSLLKLGVILNRVHERLEGYSLRPMSVFEDSPEGLLNVPRKRFSPNIHIC 121
Query: 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 249
I+ GC C+YC ARG L S+ +S+V + + +G EVWL+S+D YG D
Sbjct: 122 QISQGCNNRCSYCIVTLARGPLYSFDADSIVTDIEQAVYEGCSEVWLTSQDNAQYGMDKE 181
Query: 250 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 309
++LP LL I A +P G +R+GM NP L L E+ VY LH+P+QS S
Sbjct: 182 IHLPALLERITA-IP--GDFRVRVGMMNPASTLGILDELLRAYSSEKVYKVLHLPIQSAS 238
Query: 310 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369
D +L M R++T+ +V+ P + TDII GFPGE +EDF T++ I+ Y
Sbjct: 239 DKILEKMRRKHTMEQANFIVEKFRNAFPESTLFTDIIVGFPGEDEEDFELTLDWIRTYHP 298
Query: 370 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLG----MEGRVERIWI 425
+V+IS++ PRP T A + + + + +V +RS +L + LG M GR ++I
Sbjct: 299 DKVNISRYTPRPHTEALQFRNIDTRIVVERSGKLHRLCNQIK--LGKKEDMVGREVEVFI 356
Query: 426 TEIAADGIHLVGHTKGYVQVLVPSTGNML-GTSALVKI 462
++ A L+ T Y V++P G + G VKI
Sbjct: 357 SQ-KAKVKGLMSRTDSYKPVVIPKAGELCPGQRCRVKI 393
>gi|314936546|ref|ZP_07843893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
gi|313655165|gb|EFS18910.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus hominis
subsp. hominis C80]
Length = 514
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 217/445 (48%), Gaps = 26/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +KT+GC N D+E MAG L A Y TD+ EAD+ LINT ++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAENKVFSEIG 128
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K KK + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 129 NLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEILEEAYLSK 188
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVR + I GC CTYC RG S + ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPQDII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + +G KE+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 EEVRELAREGYKEITLLGQNVNSYGKDIK-DLDYGLGDLLEDISNIDIPRVRFTTSHPWD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + E+ + + + +H+PVQSG++AVL M R+Y+ + +VD + E +P +
Sbjct: 308 FTDRMIEV--IAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEAIPNVA 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKDR 425
Query: 400 SRELTSVFEAFT--PYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGT 456
+ L ++ EG+V + + D L G+T+ V +G
Sbjct: 426 LQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKGPREAIGQ 485
Query: 457 SALVKITSVGRWSVFGEVIKILNQV 481
VK+ ++S+ GE + NQV
Sbjct: 486 LVDVKVKEAKQYSLNGEFLHFHNQV 510
>gi|221065180|ref|ZP_03541285.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
KF-1]
gi|220710203|gb|EED65571.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
KF-1]
Length = 442
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/443 (31%), Positives = 221/443 (49%), Gaps = 30/443 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
++ +++KTFGC N+ DS+ MA L +A GY T N +EAD+ L NT Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFS 61
Query: 110 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + + K+ V V GCV +G+ +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRIRHLKEKGVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQRAAKAK 121
Query: 164 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMT 276
V + GVKE+ L ++ AY +G + +LL VAE+P G +R +
Sbjct: 182 EVAGLAEQGVKEITLLGQNVNAYLGKMGDTSEMADFALLLE-YVAEIP--GIERIRYTTS 238
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P L I R P + S LH+PVQ GSD +L AM R YT ++++ + L +
Sbjct: 239 HPNEFTPRL--IEAYARIPQLVSHLHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLRAIR 296
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
P + +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P V
Sbjct: 297 PDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTPHEV 356
Query: 396 VKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGN 452
+R +EL +V + + E G V+R+ I ++ DG L+G T V P
Sbjct: 357 KLRRLQELQAVINSHIKEISEERVGTVQRLLIEGVSKRDGSELMGRTYCNRVVNFPGNAR 416
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
++G VKIT +++ GEV+
Sbjct: 417 LIGQMVDVKITEAKAYTLRGEVL 439
>gi|425436058|ref|ZP_18816499.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
gi|389679291|emb|CCH91904.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9432]
Length = 446
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 143/447 (31%), Positives = 218/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRRIIANIRDLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
N + GT VKIT V +S+ G +
Sbjct: 420 NIEELRGTFVKVKITEVRPFSLTGVIF 446
>gi|389571842|ref|ZP_10161930.1| 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
gi|388428328|gb|EIL86125.1| 2-methylthioadenine synthetase [Bacillus sp. M 2-6]
Length = 452
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 218/450 (48%), Gaps = 37/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D +AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERKDYESKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q +++ +EE + +
Sbjct: 63 RAIRHNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKLLGYIEEYRRERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVINQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDLKDYNFAKLLKELDERVA--GLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F + L + +PG
Sbjct: 240 DEVIEVLDQSDKIVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T N +K+++F ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYL--GMEGRVERIWITEI--AADGIH--LVGHTKGYVQVLVPSTG 451
+R L ++ + EG V I E DG H VG+T Y++V+ T
Sbjct: 354 ERVHRLIALSDQLAKEYASAYEGDVLEIIPEESFKEQDGTHNLYVGYTDNYMKVVFEGTE 413
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQV 481
NM+G VKIT G G+ ++I + V
Sbjct: 414 NMIGRLVKVKITKAGYPYNEGQFVRISDDV 443
>gi|260438409|ref|ZP_05792225.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
gi|292808995|gb|EFF68200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Butyrivibrio crossotus
DSM 2876]
Length = 473
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 221/444 (49%), Gaps = 31/444 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL------ 110
G+ T +++TFGC N DSE +AG L A G+ TDN EEAD + NT S +
Sbjct: 36 GSLTYHIQTFGCQMNARDSEKLAGILEAAGFVHTDN-EEADFVIYNTCSVRENANNRLYG 94
Query: 111 -IAKCKSAKKP-----LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETL 159
+ + K KK + + GC+ Q ++++++ + IV G I + E+V L
Sbjct: 95 HLGRMKVVKKNNPDMLIAICGCMMQEPDEIEKIKTKYKFIDIVFGTHNIFKFAELVHTKL 154
Query: 160 --KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
+G + + DLP VR+ F + I GC C+YC + RG S +
Sbjct: 155 NSEGMIIDIWKDTNQIVEDLPDVRKYTFKSGVNIMYGCNNFCSYCIVPYVRGRERSREPK 214
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMT 276
++ V + +GVKEV L ++ +YG+ + PI ++ E+ +G +R
Sbjct: 215 DIIREVERFVKEGVKEVMLLGQNVNSYGKTL--ENPISFAELLKEVSKVEGLERIRFMTP 272
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + + L E V P V +H+P+QSGS +L MNR YT + +V + + +
Sbjct: 273 HPKDLSDELIETMAVT--PKVCHHIHLPLQSGSSRILKLMNRHYTKESYLELVKKIRKRM 330
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
P + TDII GFPGET+EDFN T+++++E +F + + R GTPAA M +++P V
Sbjct: 331 PDAALTTDIIVGFPGETEEDFNDTMDVVREAEFDSAYTFIYSKREGTPAASMTEQIPEEV 390
Query: 396 VKKR-SRELTSVFEAFTPYLGME-GRVERIWITEIAA--DGIHLVGHTKGYVQVLVPSTG 451
K+R R L V E+ G++ G+ ++ + E+ +G+ L G + V
Sbjct: 391 TKERFDRLLKQVGESSKKRCGLDVGKTLKVLVEEVNQNHEGL-LTGRLENNTLVHFKGNS 449
Query: 452 NMLGTSALVKITSVGRWSVFGEVI 475
+++GT VK+ + GE++
Sbjct: 450 SLVGTICDVKLNESKGFYYIGELV 473
>gi|229047455|ref|ZP_04193047.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
gi|228723899|gb|EEL75252.1| hypothetical protein bcere0027_34400 [Bacillus cereus AH676]
Length = 509
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 226/447 (50%), Gaps = 42/447 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG +A GY T ++E+AD+ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFTALGYEPTFSTEDADVVLLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
KS K+ + V GC+ Q ++ +++ + V +V G I R+ ++++ + E
Sbjct: 128 LKSLKRRNPDLLIGVCGCMSQEESVVNKIMQKNQHVDMVFGTHNIHRLPYILKDAMFSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 188 TVVEVWSKEGDVIENLPKVRRGDIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+R + A+G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EIRHLAANGYKEITLLGQNVNAYGKDFE-DIEYGLGDLMDELRKVDIARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDPLIEV--LGKGGNLVEHIHLPVQSGSTDMLKIMARKYSREHYLELVRKIKEAIPDAVL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E F + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVGFDTAFTFIYSPREGTPAAKMKDNVPMEVKKERL 424
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPS 449
+ L ++ E + Y G I E+ DG L G+T+ V +
Sbjct: 425 QRLNTLVNTLAIEKNSRYKGQ--------IVEVLVDGESKNNPEVLAGYTRTNKLVNFVA 476
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIK 476
+ +++G VKIT WS+ GE+++
Sbjct: 477 SKSLIGQLVKVKITEAKTWSLNGELVE 503
>gi|321312027|ref|YP_004204314.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BSn5]
gi|320018301|gb|ADV93287.1| ribosomal protein S12 methylthiotransferase [Bacillus subtilis
BSn5]
Length = 451
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/457 (28%), Positives = 225/457 (49%), Gaps = 31/457 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL+ + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + E+ + R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 DKVIEVLD--RSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAVT 297
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERVH 357
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLGT 456
L ++ + + E + I A VG+T Y++V+ T +M+G
Sbjct: 358 RLIALSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEDMIGK 417
Query: 457 SALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ V+D+I + R+SS
Sbjct: 418 IVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|348026751|ref|YP_004766556.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
gi|341822805|emb|CCC73729.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera elsdenii DSM
20460]
Length = 373
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 195/369 (52%), Gaps = 29/369 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAK------C 114
++GC N SDSE+ AGQL GY T++ + AD+ LINT ++A D + K
Sbjct: 13 SYGCQANMSDSEHYAGQLEELGYHHTEDLDTADVILINTCCVRETAEDKTLGKIGELKHL 72
Query: 115 KSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 169
K+ L++A GC+ Q +D K + +V G I +++E+++E + +
Sbjct: 73 KTQNPDLIIAVTGCMAQEWQDKLFKRAPHIDLVIGTHNIHKLIELIQERRSKADHYMAAD 132
Query: 170 KKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
LPA D+P R KF +PI GC CTYC + RG S ++++V ++ V A
Sbjct: 133 MSLPAFHDMPVKRFQKFFAWIPIMNGCNKFCTYCIVPYVRGREVSRPIDAIVEEIKKVAA 192
Query: 229 DGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHL 285
+G KE+ L ++ +YG D+ G + L+ A+ DG +R ++P +
Sbjct: 193 EGYKEITLLGQNVNSYGLDLKDGTDFSKLVAAVD---DIDGIERVRYMTSHPKDMTFAMI 249
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
IA+ + V + +H+P+Q GS+ +L MNR YT+ + +VD + +P + + TDI
Sbjct: 250 DAIADSQK---VVNHMHLPIQCGSNELLKKMNRGYTVEHYLELVDYARKRMPDLVLTTDI 306
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELT 404
I GFPGET+ F T+NL+K ++ + + PR GTPAA+M+ ++P +++SR L
Sbjct: 307 IVGFPGETEAMFEDTLNLLKRVQYDMAYTFIYSPRTGTPAAKMEDQIPQ---EEKSRRLQ 363
Query: 405 SVFEAFTPY 413
+ E Y
Sbjct: 364 RLMEVQNVY 372
>gi|154686803|ref|YP_001421964.1| hypothetical protein RBAM_023730 [Bacillus amyloliquefaciens FZB42]
gi|394992058|ref|ZP_10384851.1| YqeV [Bacillus sp. 916]
gi|429505951|ref|YP_007187135.1| hypothetical protein B938_12255 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|154352654|gb|ABS74733.1| YqeV [Bacillus amyloliquefaciens FZB42]
gi|393807074|gb|EJD68400.1| YqeV [Bacillus sp. 916]
gi|429487541|gb|AFZ91465.1| hypothetical protein B938_12255 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 451
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 228/462 (49%), Gaps = 41/462 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R +L ++ + EG V I E +G+ VG+T Y++V+ T
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEEGM-FVGYTDNYMKVVFKGTE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
+++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 413 DVIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|386759140|ref|YP_006232356.1| radical SAM protein [Bacillus sp. JS]
gi|384932422|gb|AFI29100.1| Radical SAM superfamily protein [Bacillus sp. JS]
Length = 451
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL+ + + + +G +RI I
Sbjct: 182 QQLVNAGYKEIVLTGIHTGGYGEDMKDYNFAKLLSELDSRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLG 455
L ++ + + E + I A VG+T Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASQYENEVLEIIPEEAFKETEEENMFVGYTDNYMKVVFKGTEDMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ V D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VGDEITEHMRLSS 451
>gi|15613914|ref|NP_242217.1| hypothetical protein BH1351 [Bacillus halodurans C-125]
gi|10173967|dbj|BAB05070.1| BH1351 [Bacillus halodurans C-125]
Length = 448
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 223/451 (49%), Gaps = 31/451 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ +T GC N ++E + GY D + AD+++INT + +T K +
Sbjct: 3 TVAFQTLGCKVNHYETEAIWQLFKGEGYEKVDFEQMADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV IV G Q +++E +E+ K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEVMAIPGVDIVVGTQDRKKMLEYIEQYKKERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 GNIMKSRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ G KE+ L+ TG YG D+ +L LL + +G +RI +
Sbjct: 182 EQLVQAGYKEIVLTGIHTGGYGEDLKDYSLARLLEDLEQ---VNGLKRIRISSIEASQLT 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + E+ + R V LH+P+QSGSD VL M R+YT++ F ++ L E +PG+ +
Sbjct: 239 DEVIEVID--RSTKVVRHLHIPLQSGSDTVLKRMRRKYTMAFFAERLERLREALPGLAVT 296
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
+D+I GFPGET+ +F +T + I ++KF ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 SDVIVGFPGETEAEFQETYDFIAKHKFSELHVFPYSKRTGTPAARMEDQVNEDVKNERVH 356
Query: 402 ELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNMLG 455
L + + EG V + E + G++ VG+T Y++V +P+T M+G
Sbjct: 357 RLIQLSDQLAKEYASQFEGEVLEMIPEERDKEEPNSGLY-VGYTDNYLKVKIPATDEMIG 415
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIA 486
VKIT G GE +++L++ +A
Sbjct: 416 KLVKVKITKAGYPYNEGEFVRVLDEEPQAVA 446
>gi|425451699|ref|ZP_18831519.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
gi|389766860|emb|CCI07600.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 7941]
Length = 446
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 143/444 (32%), Positives = 217/444 (48%), Gaps = 42/444 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDHQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFG 472
N + GT VKIT V +S+ G
Sbjct: 420 NIEELRGTFVKVKITEVRPFSLTG 443
>gi|428775987|ref|YP_007167774.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
gi|428690266|gb|AFZ43560.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Halothece sp. PCC 7418]
Length = 447
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 139/446 (31%), Positives = 221/446 (49%), Gaps = 40/446 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC------- 114
++ TFGC N++DSE MAG L A GY D+ AD+ + NT + D K
Sbjct: 10 HITTFGCQMNKADSERMAGILDAMGYQAEDDPYLADVVVYNTCTIRDNAEQKVYSYLGRQ 69
Query: 115 -----KSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
KSA L+VAGCV Q G + L+ + + +V G Q +R+ +++E+ +G+++ +
Sbjct: 70 AKRKQKSADVTLIVAGCVAQQEGEKLLRRVPELDLVMGPQHANRLGDLLEQVQEGNQI-V 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
D+ K RR+ + +NV GC C+YC + RG S T E++ +
Sbjct: 129 ATEPIYIMEDITKPRRDSDITAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPEAIREEME 187
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 276
+ G +EV L ++ AYGRD+ + P L V ++P G +R +
Sbjct: 188 ILAEQGYQEVTLLGQNIDAYGRDLPGSTPEGRHKHTFTDLLYYVHDVP--GIERIRFATS 245
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L + AE+ P V H+P QSG + VL AM+R YT +R +VD +
Sbjct: 246 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKAMSRGYTHEKYRRIVDKIRHY 302
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+E F T+ L+++ +F Q++ + + PRPGTP+A+ + S
Sbjct: 303 LPDAAISADAIVGFPGETEEQFQNTLRLVEDVEFDQLNTAAYSPRPGTPSAKWENQLSDE 362
Query: 396 VK----KRSRELTSVFEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPST 450
VK +R L S A ++ R E + + + D ++G T+
Sbjct: 363 VKSDRLQRLNHLVSTKAAARSRRYLD-RTEEVLVEGQNPKDPSQVMGRTRTNRLTFFAGD 421
Query: 451 GNML-GTSALVKITSVGRWSVFGEVI 475
N L G VKIT V +S+ GE++
Sbjct: 422 INQLRGKQVPVKITEVRAFSLTGEMV 447
>gi|443632630|ref|ZP_21116809.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443347453|gb|ELS61511.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 509
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 218/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKEAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGQVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|438002158|ref|YP_007271901.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
gi|432178952|emb|CCP25925.1| MiaB family protein, possibly involved in tRNA or rRNA modification
[Tepidanaerobacter acetatoxydans Re1]
Length = 435
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 213/435 (48%), Gaps = 35/435 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK--------- 115
T GC NQ +S +A GY + D +AD+++INT + + K +
Sbjct: 8 TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67
Query: 116 --SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RL 166
SAK + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + +
Sbjct: 68 NPSAK--VAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNI 125
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+ ++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 126 MKQQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSL 184
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 185 AKDGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAME 238
Query: 287 EIAEVLRHPC----VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E L+ C + HVP+QSG D VL MNR YT +FR +D + +L+P I
Sbjct: 239 LTDEFLKSLCGIKKICHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASIT 298
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
TD+I GFPGET+E+F QT N IKE F ++H+ F PR GT A M ++ +V +RS
Sbjct: 299 TDVIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSH 358
Query: 402 ELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L S+ E ++++ + D + G T+ Y++V V S ++
Sbjct: 359 RLISLSEKLEKDFCKRFVNSIQKVLFEDKKDDNFY-EGLTENYIKVGVKSKQDLHNKIIH 417
Query: 460 VKITSVGRWSVFGEV 474
V++ VFGEV
Sbjct: 418 VRLKKNFNDYVFGEV 432
>gi|374327055|ref|YP_005085255.1| MiaB family RNA modification protein [Pyrobaculum sp. 1860]
gi|356642324|gb|AET33003.1| RNA modification enzyme, MiaB family [Pyrobaculum sp. 1860]
Length = 417
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 141/439 (32%), Positives = 224/439 (51%), Gaps = 50/439 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKC 114
Y++T+GC ++D+E + +L G D+ EAD+ LI T + + I +
Sbjct: 5 YVETYGCWLAKADAEIIRQRL---GLTPVDSLREADVVLIYTCAVREDGEVRQLARIREL 61
Query: 115 KSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE-ETLKGHEVRLLHRKKLP 173
++ L+VAGC L L +I ++ E E +G E+++L R
Sbjct: 62 AASGGRLIVAGC-------LARLRPYTIKSAAPHAELIYPGEVEGGRGREMKILPRYS-- 112
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG---SYTVESLVGRVRTVIADG 230
+ +P+ VGCLG C +C TK RG G S + +V V+ + G
Sbjct: 113 ---------GGVIYTVPLQVGCLGNCAFCATKFTRGGAGYVKSADPDDVVRHVKEAVGRG 163
Query: 231 VKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+E++L+ +D YG D+ G LP +L I+ E+ +G +RIGM+ P +
Sbjct: 164 AREIFLTGQDVITYGFDMRWKPGWTLPDILERILKEV--EGEYRIRIGMSEPWVFEKFAD 221
Query: 287 EIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IATD 344
+ +V++ VY + H+PVQSGSD VL AM R YT ++R +V + ++ IATD
Sbjct: 222 RLLDVVKSDGRVYRYFHLPVQSGSDRVLKAMGRRYTADEYRELVRKIRRVLGETTFIATD 281
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSREL 403
II GFPGE +EDF TV L++E +F +VH+++F PRP T AA + ++VP A K+RS+ L
Sbjct: 282 IIVGFPGEGEEDFWATVKLVEELQFDKVHVARFSPRPFTEAAVIPRQVPDADKKRRSKIL 341
Query: 404 TSVFEAFTPYLGMEGRV---ERIWITEIAADGIHLVGHTKGYVQVLVP---STGNMLGTS 457
+ + +L RV + + I E+ D +VG Y QV+V S ++G
Sbjct: 342 SEL-SLRVAHLRNGLRVGSGDVVLIDEV--DHGLVVGRAGDYRQVVVKRGNSADGLMGRF 398
Query: 458 ALVKITSVGRWSVFGEVIK 476
V+I G ++GEVI+
Sbjct: 399 VKVRIAGAGPIYLYGEVIE 417
>gi|373859092|ref|ZP_09601824.1| RNA modification enzyme, MiaB family [Bacillus sp. 1NLA3E]
gi|372451183|gb|EHP24662.1| RNA modification enzyme, MiaB family [Bacillus sp. 1NLA3E]
Length = 451
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 222/447 (49%), Gaps = 36/447 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T+ T GC N ++E + GY + +D+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEQGYERVEFETTSDVYIINTCTVTNTGDKKSRQIIR 62
Query: 117 ---AKKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----V 164
K P + V GC Q S ++ + GV +V G Q ++++ +E+ + + V
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEILAIPGVDVVVGTQDRVKMLDFIEQYKQERQPINGV 122
Query: 165 RLLHRKKL-PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
R + + ++ LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 RNIMKSRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI- 281
+ ++ G KE+ L+ TG YG D+ NL +LL + E+ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAMLLQDLEKEVK--GLKRLRISSIEASQIT 239
Query: 282 ---LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+E +K ++RH LH+P+QSGS++VL M R+YT+ F +D L E++PG
Sbjct: 240 DEVIEAIKNSNIIVRH------LHIPLQSGSNSVLKRMRRKYTMEFFAERLDRLKEVLPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ I +D+I GFPGET+E+F +T N I+E++F ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIEEHQFSELHVFPYSKRTGTPAARMEDQVDEEVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGN 452
R L S+ + EG V + E + G+ Y++V+ T
Sbjct: 354 DRVHRLISLSDQLAKEYASQFEGEVLEVIPEEKHHENDESPLYTGYADNYLKVVFAGTEA 413
Query: 453 MLGTSALVKITSVGRWSVFGEVIKILN 479
M+G VKIT VG G+ I++LN
Sbjct: 414 MIGKIVKVKITKVGYPYNEGQFIRVLN 440
>gi|299535792|ref|ZP_07049113.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
gi|424739156|ref|ZP_18167578.1| hypothetical protein C518_3693 [Lysinibacillus fusiformis ZB2]
gi|298728992|gb|EFI69546.1| hypothetical protein BFZC1_07203 [Lysinibacillus fusiformis ZC1]
gi|422947021|gb|EKU41423.1| hypothetical protein C518_3693 [Lysinibacillus fusiformis ZB2]
Length = 444
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 220/447 (49%), Gaps = 31/447 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP 120
+ T GC N ++E + GY T+ +AD+++INT + +T K + +
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKEEGYDRTEFDHQADVYVINTCTVTNTGDKKSRQVIRR 63
Query: 121 LV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----VR 165
V V GC Q S ++ + GV IV G Q +++ +E+ + VR
Sbjct: 64 AVRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRTKLLGYIEQYRAERQPINAVR 123
Query: 166 -LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ + LD+P ++ L I GC CT+C ARG + S + ++ + +
Sbjct: 124 NIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLHQAQ 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G E+ L+ TG YG+D+ NL LL + A + G LRI + +
Sbjct: 183 QLVDAGYLEIVLTGIHTGGYGQDLKDYNLAQLLRDLEANVK--GLKRLRISSIEASQLTD 240
Query: 284 HLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E+ EVLR V + LH+P+QSGSD VL M R+YT+ F + L E +P + +
Sbjct: 241 ---EVIEVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDLAVT 297
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
+D+I GFPGET+E+F +T N I+++KF ++H+ F PR GTPAARM+ ++ + +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNERVH 357
Query: 402 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGNMLG 455
L S+ + E +V + E DG L G+T Y++++ +++G
Sbjct: 358 RLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKIVFEGPESLIG 417
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVD 482
VKIT G G+ +++L V+
Sbjct: 418 QLVKVKITQAGYPHSQGQFVRVLETVN 444
>gi|434400303|ref|YP_007134307.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
gi|428271400|gb|AFZ37341.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Stanieria
cyanosphaera PCC 7437]
Length = 457
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 40/443 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS-----AKK 119
TFGC N++DSE MAG L G+ ++ EAD+ L NT + D K S AK+
Sbjct: 12 TFGCQMNKADSERMAGILEEMGFRWAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQAKR 71
Query: 120 P-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 169
L+VAGCV Q G + L+ + + +V G Q +R+ +++++ G++V
Sbjct: 72 KHEQPDLTLIVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLEDLLQQVFDGNQVVATEP 131
Query: 170 KKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
+ D+ K RR+ V + I GC C+YC + RG S T E++ + +
Sbjct: 132 IHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIRAEMEELGR 190
Query: 229 DGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTNPPF 280
G KE+ L ++ AYGRD+ G + L + + V ++P G +R ++P +
Sbjct: 191 QGYKEITLLGQNIDAYGRDLPGSTETGRHQHTLTDLLYYVHDIP--GIDRIRFATSHPRY 248
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E L + + L P V H+P QSG + VL AM R YT +R+++ + + +P
Sbjct: 249 FTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMKRGYTQEKYRSIIAKIRQYMPDAA 306
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK--- 397
I+ D I GFPGET+ F T+ L++E F Q++ + + PRPGTPAA S VK
Sbjct: 307 ISADAIVGFPGETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDR 366
Query: 398 -KRSREL--TSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVP-STGN 452
+R L T E Y GR+E + + E + ++G T+G P
Sbjct: 367 LQRLNHLVATKAAERSERYF---GRIEEVLVEAENPKNPTQVMGRTRGNRLTFFPGKIEE 423
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
+ G + VKIT +S+ GEV+
Sbjct: 424 LQGKTVKVKITEARAFSLTGEVV 446
>gi|284048079|ref|YP_003398418.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952300|gb|ADB47103.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 437
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 218/443 (49%), Gaps = 37/443 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
I T GC NQSD+ M G+ + D E ADI LINT QS +I +
Sbjct: 4 IAFYTLGCKVNQSDTASMEKLFRDAGFQIVDFEEPADICLINTCVVTNMGQSKSRKIIHR 63
Query: 114 C-KSAKKPL-VVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETL----KGHEVR 165
+ KPL VV GC PQ S D + ++GV I+G Q +VVE+V E L +
Sbjct: 64 AARRDPKPLIVVTGCYPQTSPDEVVHIDGVDLIIGNQDRSKVVELVRERLGESPDEAPIN 123
Query: 166 LLHR----KKLPALDLP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+H ++ LD RN+ L I GC C YC +ARGHL S +++++
Sbjct: 124 AVHDLPVGREFEELDAAVDASRNR--AFLKIQEGCDQYCAYCIIPYARGHLRSRSLDNIR 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST-MLRIGMTNPP 279
V + A+ KE+ L G YG++I P L +A+ A L + LR+G
Sbjct: 182 EEVAKLTAEQYKEIVLIGIHLGCYGKEIPGG-PHLSDAVKAALSAEPQVPRLRLGSLESV 240
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + L ++ + R P + + LH+P+Q+G D+ L+ M+R Y + F +++ + LVP +
Sbjct: 241 EVEDALLDL--MAREPRLCAHLHLPLQAGCDSTLARMHRPYDTAKFAQLLEKIRSLVPNV 298
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399
I TD+I GFPGET+EDF +++ I++ +F ++HI + R GTPAA M P + +
Sbjct: 299 AITTDVIVGFPGETEEDFQASLDFIRQCRFSKIHIFPYSQRKGTPAAVM---PDQISNQE 355
Query: 400 SRELTSVFEAFTPYLGMEGRVERI-------WITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+E E + R E+I W +G+ G T GYV+V S N
Sbjct: 356 KQERVHRLEEVDREGNLAYRKEQIGQESTVLWERRNKNNGL-WEGLTPGYVRVYADSPEN 414
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
M G + V++ ++ + G +I
Sbjct: 415 MKGKISAVRLENLFEDGLKGGII 437
>gi|448350753|ref|ZP_21539564.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
gi|445635625|gb|ELY88792.1| MiaB-like tRNA modifying enzyme [Natrialba taiwanensis DSM 12281]
Length = 417
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 224/433 (51%), Gaps = 39/433 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + + DL I G + + E + + G ++LH ++P +
Sbjct: 59 RRAEELSEETADL------FITGCMALAQGEEFAQADVDG---QVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TKHA G + S ++E V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP
Sbjct: 228 FAEYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E++
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V +A+ +G E R + + + E AD + Y Q++V + G G V +
Sbjct: 348 VADAYADMVG-ERREDVLVVEEGTADSVKC--RDSAYRQIIVQNASEHGIEPGDFIDVDV 404
Query: 463 TSVGRWSVFGEVI 475
T+ FGE +
Sbjct: 405 TAHETMYAFGEPV 417
>gi|429736625|ref|ZP_19270517.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
gi|429154646|gb|EKX97368.1| tRNA methylthiotransferase YqeV [Selenomonas sp. oral taxon 138
str. F0429]
Length = 439
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 221/445 (49%), Gaps = 40/445 (8%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------T 109
G +M T GC NQ ++E M G A GY + E A++++INT S
Sbjct: 7 GLRAAFM-TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQ 65
Query: 110 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 162
LI + + V GC Q +++ LEGV +V G ++ R+V+ VEE L+
Sbjct: 66 LIRRAARTNPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKERARIVDYVEEALRADTGA 125
Query: 163 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 126 IGTITDIMQARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 179
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
+ ++ ++ + G EV L+ GAYG D+ + P L +A L + LR+G
Sbjct: 180 ELSAVAREMKLLTEAGFHEVVLTGIHLGAYGIDLR-DRPTLADACRTALAEEDLRRLRLG 238
Query: 275 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
+E E+ E++R P + LH+P+Q+GSD VL AMNR Y + F T+++ +
Sbjct: 239 SLES---VELSAELLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFATLLEDVR 295
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 392
VPG+ I+TDII GFPGET+EDF ++ ++ F ++H+ + PR GTPAAR +V
Sbjct: 296 RAVPGVAISTDIIVGFPGETEEDFAAGLDFVRAMGFARMHVFPYSPRKGTPAARRSDQVL 355
Query: 393 SAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST 450
V K+R+ + ++ + + G V + E +ADG+ G T+ Y++V +
Sbjct: 356 PMVRKERAARMQALADELAEEYHRAALGSVADVLF-ETSADGV-TDGLTETYIRVYTDAP 413
Query: 451 GNMLGTSALVKITSVGRWSVFGEVI 475
G A +++T + R V+GE I
Sbjct: 414 VTR-GEIAPLRLTHLYRDGVWGEPI 437
>gi|421730939|ref|ZP_16170065.1| hypothetical protein WYY_07619 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|407075093|gb|EKE48080.1| hypothetical protein WYY_07619 [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 451
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/461 (28%), Positives = 226/461 (49%), Gaps = 39/461 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGN 452
+R +L ++ + EG V I E + VG+T Y++V+ T +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEEAFKESDEAGMFVGYTDNYMKVVFKGTED 413
Query: 453 MLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
++G VKI G G+ +++ V+D++ N R+SS
Sbjct: 414 VIGKLVKVKIQKAGYPYNEGQFVRV---VEDEMTRNMRMSS 451
>gi|402817481|ref|ZP_10867069.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
gi|402505003|gb|EJW15530.1| ribosomal protein S12 methylthiotransferase RimO [Paenibacillus
alvei DSM 29]
Length = 442
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 199/375 (53%), Gaps = 37/375 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDT 109
TE I + T GC N DSE M+G + GY L +N E+A + ++NT + +++T
Sbjct: 2 TEKIKIVTLGCDKNLVDSEIMSGLIYERGYELVENEEDATVIIVNTCGFIDAAKEESVNT 61
Query: 110 LIA----KCKSAKKPLVVAGCVPQGSRD-----LKELEGVSIVGVQQIDRVVEVVEETLK 160
++ K + K L+V+GC+ Q ++ + E++G IVG D++ ++V+E L+
Sbjct: 62 ILRLADLKETAELKALIVSGCLTQRYKEQLLDEMPEIDG--IVGTGDFDKINDIVDEALQ 119
Query: 161 GHE-VRLLHRKKLPALD----LP-KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
G + +R+ + P D LP KV ++ + I GC CT+C RG S
Sbjct: 120 GSKPIRVGN----PVFDYDRILPRKVATPRYTAYVKIAEGCDNNCTFCSIPIMRGKFRSR 175
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLR 272
T+ES++ V + GVKE+ L ++D+ YG D+ G LP L+N V+E+P G +R
Sbjct: 176 TMESILAEVAQLAEQGVKEISLIAQDSTNYGVDLYDGFKLPELMNK-VSEIP--GVEWVR 232
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+ P F E L + + +P + ++ +P+Q D++L M R D R +V+ +
Sbjct: 233 LHYAYPGFFTEELMDT--IASNPKICKYIDMPLQHSEDSILKRMRRPGRQRDSRELVNKI 290
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 391
E +PG+ + T II GFPGETDEDF++ + I+E KF ++ + + TPA R+ V
Sbjct: 291 RERIPGVALRTSIIVGFPGETDEDFDRLCDFIREMKFDRLGVFTYSSEEDTPATRLPDHV 350
Query: 392 PSAVVKKRSRELTSV 406
P V + R+ L +
Sbjct: 351 PDEVKEWRANTLMEI 365
>gi|319778544|ref|YP_004129457.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|317108568|gb|ADU91314.1| tRNA-i(6)A37 methylthiotransferase [Taylorella equigenitalis MCE9]
gi|399114834|emb|CCG17630.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis 14/56]
Length = 469
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 225/457 (49%), Gaps = 54/457 (11%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTLIAKCK 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NT S + K
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKAQEKVF 88
Query: 116 S------------AKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
S + + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 161 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 277 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
+I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----- 386
L + PG+ +++D I GFPGET++DF T+ LIK+ + RPGTPAA
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDD 381
Query: 387 --------RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
R++++ A+V K+++E + + +EG +R D L+G
Sbjct: 382 TPYEVKLDRLQRL-QALVNKQAKEFSEKMLGTEQIILVEGFSKR--------DSNELMGR 432
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
T+ V + N++G V+IT V S+ GE++
Sbjct: 433 TENNRIVNFKGSENLIGQMVPVRITEVYTNSLRGELV 469
>gi|86609143|ref|YP_477905.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. JA-2-3B'a(2-13)]
gi|123502140|sp|Q2JKY0.1|MIAB_SYNJB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|86557685|gb|ABD02642.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 444
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 136/442 (30%), Positives = 216/442 (48%), Gaps = 31/442 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T Y TFGC N++D+E MAG L + GY T++ +AD+ L NT + D K S
Sbjct: 5 TYYTITFGCQMNRADTERMAGILESLGYVATEDELQADLVLYNTCTIRDNAEQKVYSYLG 64
Query: 117 ------AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
K P L+VAGCV Q G + L+ + + +V G Q ++R+ +++ + G++V
Sbjct: 65 IQAQRKRKNPAIKLIVAGCVAQQEGEKLLRRVPELDLVMGPQYVNRLGDLLAQVEAGNQV 124
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 222
++P D+ K RR+ V INV GC CTYC RG S +++
Sbjct: 125 VATDPVEIPE-DITKPRRDSQVTAW-INVIYGCNERCTYCIVPRVRGQEQSRQPQAIRAE 182
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+ V G +EV L ++ AYGRD+ NL LL + + +G +R ++P +
Sbjct: 183 IEDVARAGYREVTLLGQNIDAYGRDLDPKTNLASLLRFVHSV---EGIERIRFATSHPRY 239
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E L I P V H+P Q+GS+ VL M R YT +R ++ + + +P
Sbjct: 240 FTEEL--ITTCAELPKVCEHFHIPFQAGSNEVLKRMRRGYTHERYRQIIQLIRQYMPEAA 297
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
I+ D I GFPGET+ F +T+ L+++ F QV+ + + PRPGTPAA +VP R
Sbjct: 298 ISADAIVGFPGETEAQFQETLQLVQDIGFDQVNTAAYSPRPGTPAAEWPDQVPEEEKSDR 357
Query: 400 SRELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNML-G 455
+ L + A + G+V+ + + + +G T+G V L G
Sbjct: 358 LQRLNRLVAEVAAARSARLLGQVQEVLVEGPNPKNPRQAMGRTRGNRLVFFEGDPEELQG 417
Query: 456 TSALVKITSVGRWSVFGEVIKI 477
+ V+IT+ +S+ GE + +
Sbjct: 418 SLVPVRITATRAFSLTGEAVTV 439
>gi|384160190|ref|YP_005542263.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384165120|ref|YP_005546499.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens LL3]
gi|384169260|ref|YP_005550638.1| hypothetical protein BAXH7_02664 [Bacillus amyloliquefaciens XH7]
gi|328554278|gb|AEB24770.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328912675|gb|AEB64271.1| ribosomal protein S12 methylthiotransferase [Bacillus
amyloliquefaciens LL3]
gi|341828539|gb|AEK89790.1| hypothetical protein BAXH7_02664 [Bacillus amyloliquefaciens XH7]
Length = 451
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 228/462 (49%), Gaps = 41/462 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERKEFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYREERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDTRV--EGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDASDKIVRH------LHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T IKE+KF ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYRFIKEHKFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERI----WITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R +L ++ + EG V I E DG+ VG+T Y++V+ +
Sbjct: 354 ERVHKLIALSDQLAKEYASDYEGEVLEIIPEETFKESDEDGM-FVGYTDNYMKVVFKGSE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
+++G VKI G G+ +++ V++++ N R+SS
Sbjct: 413 DLIGKLVKVKIQKAGYPYNEGQFVRV---VEEEMTQNMRMSS 451
>gi|423084190|ref|ZP_17072695.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|423086753|ref|ZP_17075144.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
gi|357543237|gb|EHJ25270.1| tRNA methylthiotransferase YqeV [Clostridium difficile
002-P50-2011]
gi|357545862|gb|EHJ27825.1| tRNA methylthiotransferase YqeV [Clostridium difficile
050-P50-2011]
Length = 432
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 212/435 (48%), Gaps = 40/435 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTLIAKCK 115
T GC NQ ++E M GY ++ E AD+++INT +S K K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 116 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ + V GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 174 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINQIEKIERIRLSSVEPILFTD 240
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
D+I GFPGET+E+F +T ++E + Q+HI ++ PR GTPAA M+ +V + RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLREIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 403 LTSV----FEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L ++ F F T ++G E V + E +G G T Y++V+V S N+ G
Sbjct: 359 LLNLSKVNFNKFATKFIGRELDV----LFEQNIEGNKYEGLTSNYIRVVVESDKNIQGQI 414
Query: 458 ALVKITSVGRWSVFG 472
VKI V V G
Sbjct: 415 LKVKINDVKDEYVEG 429
>gi|392393735|ref|YP_006430337.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390524813|gb|AFM00544.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 446
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 121/437 (27%), Positives = 213/437 (48%), Gaps = 33/437 (7%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC ++ D++ + S GY + E+AD+ +INT +SA + ++ K K
Sbjct: 15 YGCQMSERDADTLTEISSQKGYIRSQELEKADLIIINTCCVRESAENKILGKIGELKHLK 74
Query: 120 ------PLVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVR 165
+ ++GC+ Q L+ L + + R++E EE KG
Sbjct: 75 EANPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEESEE--KGKVAE 132
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ + K +P + K + I+ GC CTYC H RG S E +V +
Sbjct: 133 VWEKPKETQESVPLAEKGKLKAFVNISYGCDNFCTYCIVPHVRGRERSRKPEDIVEEISA 192
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G +EV L ++ +YG+D+ + LL A+ A DG +R ++P + +
Sbjct: 193 LVKTGCREVTLLGQNVNSYGQDLDRAYDFADLLKAVDA---IDGLWRVRFMTSHPKDLSD 249
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L E H C + +H+P Q+GS+ +L +MNR+YT + + + + ++P + T
Sbjct: 250 KLIETIAQGTHLCEH--IHLPFQAGSNEILKSMNRKYTREYYLSRIAKIKAIIPQASLTT 307
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
DII GFPGET+EDF QT++L++E ++ Q + R GTPAA+M +++P + K+R +
Sbjct: 308 DIIVGFPGETEEDFEQTLDLVREVRYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQH 367
Query: 403 LTSV--FEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L +V ++ T M G+ + + ++ L G T+G V+ P ++GT
Sbjct: 368 LINVQNAQSLTWRQEMIGKTYEVLVEGPSKSNPDRLTGRTRGNELVVFPGEAKLMGTLVQ 427
Query: 460 VKITSVGRWSVFGEVIK 476
V I W++FGE ++
Sbjct: 428 VLIQDANSWTLFGECVE 444
>gi|428316469|ref|YP_007114351.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
gi|428240149|gb|AFZ05935.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Oscillatoria
nigro-viridis PCC 7112]
Length = 466
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 216/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ EA + L NT + D + S
Sbjct: 29 HITTFGCQMNKADSERMAGILENMGFEFSEDPNEASLILYNTCTIRDNAEQRVYSNLGRQ 88
Query: 117 ----AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
++P LVVAGCV Q G L+ + + +V G Q +R+ +++E+ +G++V
Sbjct: 89 AHRKRQEPGLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLEDLLEQVFEGNQVVA 148
Query: 167 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
++ D+ K RR+ K + + GC CTYC + RG S E++ +
Sbjct: 149 TEAVEIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRMPEAIRAEMED 207
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMTN 277
+ G KEV L ++ AYGRD+ P L V ++P G LR ++
Sbjct: 208 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSHQHTLTDLLYFVQDVP--GVDRLRFATSH 265
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 266 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMSRGYTQEKYRRIIDTIRRYM 322
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I D I GFPGET+ F +T+ LI++ F V+ + + PRPGTPAA + S V
Sbjct: 323 PDASITADAIVGFPGETEAQFEKTLKLIEDVGFDLVNTAAYSPRPGTPAALWENQLSEEV 382
Query: 397 KKRSRE------LTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKG-YVQVLVP 448
K + T+ E Y GR E + + + D ++G T+G +
Sbjct: 383 KADRLQRINHVVTTTAMERSQRYF---GRTEEVLVEAQNLKDSTQVMGRTRGNRLTFFKG 439
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVI 475
+ G VKIT + +S+ GE++
Sbjct: 440 DIAELAGKMVRVKITDIRAFSLTGEML 466
>gi|291522428|emb|CBK80721.1| SSU ribosomal protein S12P methylthiotransferase [Coprococcus catus
GD/7]
Length = 454
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 127/448 (28%), Positives = 220/448 (49%), Gaps = 40/448 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT------------QSAM 107
TI+ + GC N DSE M G L A G+ L D+ EADI ++NT Q+ +
Sbjct: 10 TIFFVSLGCDKNLVDSEVMLGILRAHGFTLVDDEIEADIIVVNTCSFIHDAKEESIQTIL 69
Query: 108 DTLIAKCKSAKKPLVVAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKGHEV 164
+ K K L+V GC+ + +D + E+E V +++G + EVV E L+G +V
Sbjct: 70 EMAEMKHSCRCKALIVTGCMAERYKDEIMTEIEEVDAVIGTTSYQHIAEVVAEVLEGQKV 129
Query: 165 RLLHR-KKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + +P +D+ ++ + L I GC CTYC RG S++++ L+ +
Sbjct: 130 KQFDDLQAMPEVDVQRIMTTGGYSSYLKIAEGCDKHCTYCIIPKLRGSYRSHSMDYLIKQ 189
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ A GVKE+ + +++T YG D+ +L + +G + +R+ P I
Sbjct: 190 AESLAAQGVKELNIVAQETTVYGTDLYNGQKMLPELLKRLCRIEGLSWIRVLYCYPEEIN 249
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E L ++ + P + +L +P+Q GSDAVL M R T ++ R+++ L E +P + +
Sbjct: 250 EELIQV--IKEEPKICHYLDLPIQHGSDAVLKRMGRRTTQAELRSIIGRLREEIPDIALR 307
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 402
T +I GFPGET+ D + + +K+ +F ++ + + GTPAA+M VK+ R+
Sbjct: 308 TTLIAGFPGETEADHQEALQFVKDMRFDRLGVFTYSEEEGTPAAQMPDQIDEAVKETRRD 367
Query: 403 LTSV------FEAFTPYLG------MEGRV--ERIWITEIAADGIHLVGHTKGYVQVLVP 448
+ F+ +G +EGR+ E ++I D + G+ V V
Sbjct: 368 ALMMAQQAIAFDKSEEMVGKTVDVLIEGRLPEEDVYIGRTYRDAPDVDGY------VFVH 421
Query: 449 STGNML-GTSALVKITSVGRWSVFGEVI 475
+ +M+ G VKIT + + G+VI
Sbjct: 422 AEEDMISGDIVKVKITDAQDYDLVGDVI 449
>gi|357058521|ref|ZP_09119372.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
gi|355373849|gb|EHG21157.1| MiaB-like tRNA modifying enzyme [Selenomonas infelix ATCC 43532]
Length = 438
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 214/442 (48%), Gaps = 41/442 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------T 109
G + +M T GC NQ ++E M G GY + E AD+++INT S
Sbjct: 8 GVKAAFM-TLGCKVNQFETETMEGLFRVRGYDIVPFEERADVYVINTCSVTHLSDRKSRQ 66
Query: 110 LIAKCKSAKKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 162
LI + + V GC Q +++ L+GV +V G ++ R+V+ VE +L+
Sbjct: 67 LIRRAARTNPAACIAVTGCYAQVAPEEIRALDGVRVVIGTKERARIVDYVEASLRADTGA 126
Query: 163 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
+ R+ + +P LP R L I GC CT+C +ARG + S
Sbjct: 127 FGTITDIMQARVF--EDIPLHALPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 180
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
+ ++ +R ++ G EV L+ GAYG D+ P L +A L G LR+G
Sbjct: 181 ELSAVAREMRLLVDAGFHEVVLTGIHLGAYGIDLA-ERPTLADACRTALAERGLRRLRLG 239
Query: 275 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
+E ++ E++R P + LH+P+Q+GSDAVL AMNR YT + F +V +
Sbjct: 240 SLES---VELSADLLELMRTEPRFAAHLHLPLQAGSDAVLRAMNRHYTTAQFAQLVMEVR 296
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVP 392
VPG+ I+TDII GFPGET+ DF ++ ++ F ++H+ + R GTPAA R +VP
Sbjct: 297 AAVPGVAISTDIIVGFPGETEADFAAGMDFVRRMGFARMHVFPYSARRGTPAARRTDQVP 356
Query: 393 SAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL--VP 448
V K+R+ + ++ E + M G V + E DG+ G T+ YV+V P
Sbjct: 357 PMVRKERAARMQALAEELAEGYHRSMLGSVAEVLF-ETQEDGV-TDGLTETYVRVYTDAP 414
Query: 449 STGNMLGTSALVKITSVGRWSV 470
T + L+ I G W +
Sbjct: 415 VTRGEIVPVRLMHIYKDGVWGM 436
>gi|448435830|ref|ZP_21586898.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
gi|445683265|gb|ELZ35665.1| MiaB-like tRNA modifying enzyme [Halorubrum tebenquichense DSM
14210]
Length = 450
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 138/441 (31%), Positives = 214/441 (48%), Gaps = 38/441 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 171
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDITAELVVTGCMA-----LAQGEQFAEADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S ++E V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSIEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I E+A+
Sbjct: 170 KELRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHDELAD 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFADNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P E DED +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDDEDHELSMDLLAEVRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKAMSELKME 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V EA+ +G E + + E D + Y Q++V + G +G V+
Sbjct: 347 VVGEAYESMVGE--TFEVLVVEEGTGDSVKC--RDSAYRQIIVQNATDRGVEVGDFLTVE 402
Query: 462 ITSVGRWSVFGEVIKILNQVD 482
+T FG+ + D
Sbjct: 403 VTGHNTVYAFGDPVATDEAAD 423
>gi|409723333|ref|ZP_11270609.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|448722015|ref|ZP_21704556.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
gi|445790418|gb|EMA41080.1| MiaB-like tRNA modifying enzyme [Halococcus hamelinensis 100A6]
Length = 424
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 214/432 (49%), Gaps = 36/432 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCK 115
+ +++T+GC+ N+ +S + +L G+ + + AD+ ++NT + ++ ++ + +
Sbjct: 3 SYHIETYGCTANRGESREIERRLRDGGHHPAEGPKAADVAILNTCTVVEKTETNMLRRAR 62
Query: 116 SAKKP---LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVE--ETLKGHEVRLLHRK 170
++ LVV GC+ + + G ++ VV E T G E
Sbjct: 63 ELEEETADLVVTGCMALAQGEQFADVDARVCGWDEVPEVVRNGECPTTAPGTE------- 115
Query: 171 KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
P LD V ILPI GC+ C+YC TKHA G + S +E V + R ++ G
Sbjct: 116 --PILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPPIEENVEKARALVHAG 166
Query: 231 VKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ ++ +DTG YG D G L LL+ I +G +R+GM NP + +E+A
Sbjct: 167 AKEIRVTGQDTGVYGWDEGERKLHRLLDRI---CDIEGDFRVRVGMANPKGVHGIREELA 223
Query: 290 EVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
EV + +Y FLH+PVQSGSD VL AM R++ + +FR VV+T + +ATD I G
Sbjct: 224 EVFAENEKLYDFLHIPVQSGSDDVLGAMRRQHQVREFREVVETFDAHLDHWTLATDFIVG 283
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FP ETD D ++ L++E ++++++F RPGT AA MK + + K+RS +T +
Sbjct: 284 FPTETDADHEASMELLRETTPERINVTRFSKRPGTDAADMKGLGGTLKKERSSAMTDLKM 343
Query: 409 AF--TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKIT 463
Y M G + + E G + + + Y QV++ G G V +T
Sbjct: 344 DVVENAYRSMVGECHEVLVVE-QGTGDSVKAYDEAYRQVIIREADERGIEPGDVVEVVVT 402
Query: 464 SVGRWSVFGEVI 475
S FGE +
Sbjct: 403 SQNTVYAFGEPV 414
>gi|448354903|ref|ZP_21543658.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
gi|445637234|gb|ELY90390.1| MiaB-like tRNA modifying protein [Natrialba hulunbeirensis JCM
10989]
Length = 417
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 128/402 (31%), Positives = 209/402 (51%), Gaps = 36/402 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEEICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 292 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y+FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA MK + V K RS+E+++
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAANMKGLGGQVKKDRSKEMSAAKREL 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
V EA+ +G E R + + + + AD + Y Q++V
Sbjct: 348 VGEAYAEMVG-ETREDVLVVEQGTADSVKC--RDAAYRQLIV 386
>gi|333978768|ref|YP_004516713.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822249|gb|AEG14912.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 445
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 221/440 (50%), Gaps = 33/440 (7%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL 110
+ +IP E I TFGC N DSE +AG L + GY ++ EAD+ L+NT +T
Sbjct: 1 MKERIPTYEVI---TFGCQMNDHDSEVIAGMLESLGYEPAASTGEADVILVNTCCVRETA 57
Query: 111 ----------IAKCKSAKKPLVV--AGCVPQG---SRDLKEL--EGVSIVGVQQIDRVVE 153
+A K K L++ AGC+ Q +R +K + I+G + R+ E
Sbjct: 58 ENKIYGLLGRLAHLKDKKGDLIIGIAGCMTQQPGVARKIKNRFPQVDLILGTHNLHRLPE 117
Query: 154 VVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 211
++ + + E + + + +LP R ++ + I GC CTYC + RG
Sbjct: 118 LLLQARECRERVMEVWDQAGEIVENLPIRRASRVKAWVNITYGCNNFCTYCIVPYVRGRE 177
Query: 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTM 270
S E ++ +R ++ +G +EV L ++ +YG+D+ G L A V ++P G
Sbjct: 178 RSRRPEDILNEIRQLVQEGYREVTLLGQNVNSYGKDLPGPTSFARLLAEVDQIP--GLWR 235
Query: 271 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
+R ++P + L I + R P V +H+PVQ+GS+ +L MNR Y + +V+
Sbjct: 236 IRFTTSHPRDFTQEL--IDTIARCPHVCEHIHLPVQAGSNRILKLMNRGYDRDYYLDLVE 293
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 389
+ +PG+ I TDI+ GFPGET+EDF QT++L++ +F + PRPGTPAAR+ +
Sbjct: 294 RIRRAIPGVAITTDIMVGFPGETEEDFAQTMDLVERVRFDGAFTFVYNPRPGTPAARLPE 353
Query: 390 KVPSAVVKKRSRELTSVFEAFT--PYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVL 446
+VP + +R ++L T + GRVE++ + E + + G T+ V+
Sbjct: 354 QVPDGIKSERIQKLIERQNEITLAHNQALVGRVEQVLVEGESKTNPEMMSGRTRTNRLVI 413
Query: 447 VPSTGNMLGTSALVKITSVG 466
P + ++ G LV +T G
Sbjct: 414 FPGSSDLAG--QLVNVTVTG 431
>gi|332799055|ref|YP_004460554.1| MiaB-like tRNA modifying protein [Tepidanaerobacter acetatoxydans
Re1]
gi|332696790|gb|AEE91247.1| MiaB-like tRNA modifying enzyme [Tepidanaerobacter acetatoxydans
Re1]
Length = 435
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 214/435 (49%), Gaps = 35/435 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK--------- 115
T GC NQ +S +A GY + D +AD+++INT + + K +
Sbjct: 8 TLGCKVNQYESAAIAELFENKGYEIVDFDTKADVYVINTCNVTNESARKSRQIIRKAIRN 67
Query: 116 --SAKKPLVVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEV-----RL 166
SAK + V GC Q + ++ ++GVS+ VG + R+V++VE+ + + +
Sbjct: 68 NPSAK--VAVVGCYVQMALHEVLNIKGVSVAVGTKDRHRIVDLVEKAEQCSKPIVTVGNI 125
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+ ++ + L K R K L I GC C+YC +ARG + S ++++++ +++
Sbjct: 126 MKQQTFEEIAL-KGHRQKTRAFLKIQDGCNMFCSYCIIPYARGPVRSRSIDNIIDEAQSL 184
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
DG KE+ L+ G YGRD LL+ I +G +R+ +E ++
Sbjct: 185 AKDGFKEIVLTGIHLGLYGRDFKDENIHLLDVISRIADIEGIERIRLSS------IEAME 238
Query: 287 EIAEVLRHPC-VYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E L+ C + F HVP+QSG D VL MNR YT +FR +D + +L+P I
Sbjct: 239 LTDEFLKSLCGIKKFCHHFHVPLQSGCDTVLRRMNRRYTTDEFRDRIDYIRQLMPDASIT 298
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
TD+I GFPGET+E+F QT N IKE F ++H+ F PR GT A M ++ +V +RS
Sbjct: 299 TDVIVGFPGETEEEFKQTENFIKEINFSRLHVFPFSPRKGTLADDMPNQIEKSVKVERSH 358
Query: 402 ELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L S+ E ++++ + D + G T+ Y++V V S ++
Sbjct: 359 RLISLSEKLEKDFCKRFVNSIQKVLFEDKKDDNFY-EGLTENYIKVGVKSKQDLHNKIIH 417
Query: 460 VKITSVGRWSVFGEV 474
V++ VFGEV
Sbjct: 418 VRLKKNFNDYVFGEV 432
>gi|121595917|ref|YP_987813.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax sp.
JS42]
gi|229890416|sp|A1WBW2.1|MIAB_ACISJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|120607997|gb|ABM43737.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax sp. JS42]
Length = 448
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 141/449 (31%), Positives = 222/449 (49%), Gaps = 42/449 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NT Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 110 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K V V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRVKHLKDKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPELL--NARAAK 119
Query: 164 VRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
R P ++ LP R + I GC C+YC + RG S E +
Sbjct: 120 ARPQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDV 179
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIG 274
+ V + GVKEV L ++ AY +G + +LL VAE+P G +R
Sbjct: 180 LVEVAGLADQGVKEVTLLGQNVNAYLGAMGDTAEKADFALLLE-YVAEIP--GIERIRFT 236
Query: 275 MTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
++P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ +
Sbjct: 237 TSHPNEFTPRLIEAYAKIPKLVSH------LHLPVQHGSDRILMAMKRGYTAMEYKSTIR 290
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 389
L + P M +++D I GFPGET+EDF + + LI + +F F PRPGTPAA +
Sbjct: 291 KLRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHD 350
Query: 390 KVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVL 446
P V +R +EL +V + E G V+R+ + ++ DG L+G T+ V
Sbjct: 351 DTPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVN 410
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVI 475
P ++G VKIT +++ GEV+
Sbjct: 411 FPGHERLIGQMIDVKITEARTYTLRGEVV 439
>gi|383639215|ref|ZP_09951621.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
chartreusis NRRL 12338]
Length = 507
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 193/386 (50%), Gaps = 36/386 (9%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEEADIWLINTQSAMDTL 110
S + GT T ++T+GC N DSE +AG L GY + ++EAD+ + NT + +
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGADEADVVVFNTCAVRENA 66
Query: 111 IAKC---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVV 155
K + A +P + V GC+ Q RD +K+ V +V G I ++ ++
Sbjct: 67 DNKLYGNLGHLAPQKAARPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLL 126
Query: 156 EETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 ERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKD 186
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTML 271
++ + ++A+GV E+ L ++ AYG DIG LL A ++
Sbjct: 187 RRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GKIESLE 241
Query: 272 RIGMTNPPFILEHLKE-----IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 326
R+ T+P H ++ IA + P V LH+P+QSGSD VL AM R Y +
Sbjct: 242 RVRFTSP-----HPRDFTDDVIAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERYL 296
Query: 327 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 386
+++ + +P I+TDII GFPGETDEDF QT+++++E +F Q Q+ RPGTPAA
Sbjct: 297 GIIEKVRAAIPHAAISTDIIVGFPGETDEDFEQTLHVVREARFAQAFTFQYSKRPGTPAA 356
Query: 387 RMK-KVPSAVVKKRSRELTSVFEAFT 411
M ++P VV++R L ++ E +
Sbjct: 357 EMDGQIPKKVVQERYERLVALQEEIS 382
>gi|160933105|ref|ZP_02080494.1| hypothetical protein CLOLEP_01948 [Clostridium leptum DSM 753]
gi|156868179|gb|EDO61551.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Clostridium leptum DSM
753]
Length = 459
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 207/437 (47%), Gaps = 30/437 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC---- 114
++T+GC N SD E + G L G+ T++ EEAD L NT + A D +
Sbjct: 29 VRTYGCQQNVSDGEKIKGMLQQMGFGFTEDQEEADFILFNTCAIREHAEDRIFGNVGALK 88
Query: 115 --KSAKKPLVVA--GCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 165
K L++A GC+ + R K VS+V G + ++V ETL G + R
Sbjct: 89 YLKRRNPSLIIALCGCMMEQEHVVERIRKSYPFVSLVFGTHSLSSFPQLVYETLTGAK-R 147
Query: 166 LLHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ R +D +P R +F LP+ GC C+YC + RG S E+++
Sbjct: 148 VFQRGGEDTIDENIPVRRDGRFKAWLPVMYGCDNFCSYCVVPYVRGRERSREPEAVLKEA 207
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
R +I G K++ L ++ +YG+++ VN LL I +G LR ++P
Sbjct: 208 RQLIEGGYKDITLLGQNVNSYGKNLPEPVNFAKLLKEIS---DMEGDYWLRFMTSHPKDC 264
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L ++ H + LH+P QSG++ VL MNR YT + ++ E +PG+ I
Sbjct: 265 TKELIDVMASSGH--IAKHLHLPFQSGNNRVLKEMNRRYTREQYLEIIRYAREKMPGLSI 322
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR-S 400
+D+I GFPGET E+F T++LI+E F ++ F PR GTPAA M S K R
Sbjct: 323 TSDVIVGFPGETYEEFQDTLSLIREVGFTALYTFIFSPRKGTPAAGMSDPVSHKEKTRWF 382
Query: 401 RELTSVFEAFTPY--LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
EL V E + M G+ R + E A+ L T+ V V +P M+G+
Sbjct: 383 AELLKVQEEISVRRCASMVGKTVRGLVEEEASKPGVLNARTEENVTVEIPGGPEMIGSFR 442
Query: 459 LVKITSVGRWSVFGEVI 475
+ +T G W + G I
Sbjct: 443 NILVTDAGNWVLKGNCI 459
>gi|255657963|ref|ZP_05403372.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
gi|260850164|gb|EEX70171.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Mitsuokella multacida DSM
20544]
Length = 444
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 135/443 (30%), Positives = 216/443 (48%), Gaps = 41/443 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------I 111
Y+ +GC NQSD+E M GQL GY T++ EEAD+ LINT ++A D + I
Sbjct: 13 YLLVYGCQMNQSDAERMMGQLRTIGYERTESMEEADLILINTCCVRETAEDRVYGKIGEI 72
Query: 112 AKCKSAKKPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL--KGHEV 164
+ K L+ + GC+ Q D +K + V G ++ + VV+E GH V
Sbjct: 73 KRLKRENPELIFGITGCMAQKEGDALIKRAPHIDFVLGTNKVHELTHVVQEIQAEHGHVV 132
Query: 165 RL-LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ L +LP D+P R +PI GC CTYC + RG S E +V V
Sbjct: 133 DVQLGETELPD-DVPVARAGSLSAWVPIMYGCNNFCTYCIVPYVRGRERSRLPEDIVHEV 191
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ +G +EV L ++ +YG+D + L +V ++P G+ F+
Sbjct: 192 EEAVKNGYEEVTLLGQNVNSYGKDHKLADFADLLKMVDKVP---------GIRRVRFMTS 242
Query: 284 HLKEIAEVL-------RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
H K++++ + H C +H+PVQ GS+ +L AMNR YT+ +R +V + +
Sbjct: 243 HPKDLSDKVIAAIRDGEHLC--EHIHLPVQYGSNRILKAMNRVYTVESYRDLVRRIRAAI 300
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
P + + TD+I GFPGETDEDF Q ++ ++E ++ + + R GTPAA M+ +V +V
Sbjct: 301 PDVSLTTDLIVGFPGETDEDFQQMLDFLREIRYDSAYTFIYSKRSGTPAATMENQVDESV 360
Query: 396 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGN 452
K+R L +V + + + G+ I + + + + +G T+ VL G
Sbjct: 361 KKERLNALMAVQNEISLAINEKLLGKTLEIMVEGPSKNEPSVWMGRTRTNKIVLFAHAGE 420
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
G V+IT W + GE +
Sbjct: 421 KPGDFIDVRITHPQTWVLKGERV 443
>gi|452991330|emb|CCQ97390.1| Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium ultunense Esp]
Length = 432
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 213/435 (48%), Gaps = 62/435 (14%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ ++E M GY + D+ ++ADI++INT + + I + K A
Sbjct: 8 TLGCKVNQYETEAMEELFEKRGYEIVDSDKDADIYVINTCTVTNLGDRKSRQFIRRAKKA 67
Query: 118 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEE------------TLKG 161
++A GC Q +++ +EGV IV G + +V++ EE ++KG
Sbjct: 68 NANSIIAAVGCYSQVAPEEVEAIEGVDIVIGTTDRNSIVDLCEEAKNKNKKINIVKSIKG 127
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
H K+ L++ ++ +K + I GC C+YC +ARG + S +E ++
Sbjct: 128 H-------KEFENLNIADLK-SKTRAYIKIQEGCNQFCSYCIIPYARGPIRSRDLEGIIN 179
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 280
+ + G KEV L+ +YG+D + L ++ E+ DG +R+ P F
Sbjct: 180 ESKRLAKAGFKEVILTGIHVTSYGKDFQ---DLTLVDVIEEISKIDGIERIRLSSIEPRF 236
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ E + A + C H+ +QSGS+ VL MNR+YT S ++ +V+ + E +P
Sbjct: 237 VNEKFMQRAVNSKKLC--DHFHLSLQSGSNTVLKRMNRKYTTSQYKDIVNLIREYMPDAG 294
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
I TDII GFPGET E+F +T N +K+ F ++H+ ++ PR GTPA+R K ++ + ++R
Sbjct: 295 ITTDIIVGFPGETAEEFEETYNYVKDIHFSRIHVFKYSPRKGTPASRFKDQIHGNIKQER 354
Query: 400 SRELT----SVFEAFT--------PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
S +L + E+F P L EG E+ W+ G+T Y+++
Sbjct: 355 SEKLILLGEELMESFNKKYIDKTLPVLFEEG--EKGWME----------GYTTNYIRIKA 402
Query: 448 PSTGNMLGTSALVKI 462
+ + G VKI
Sbjct: 403 QAGDEIRGKILPVKI 417
>gi|448394368|ref|ZP_21568173.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
gi|445662410|gb|ELZ15178.1| MiaB-like tRNA modifying enzyme [Haloterrigena salina JCM 13891]
Length = 417
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 222/432 (51%), Gaps = 37/432 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + +L G+ D ++EAD+ ++NT + ++ ++ + +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGADEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 118 KKP---LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ ++ +DTG YG D G L + + E+ +G +R+GM NP + +E+AEV
Sbjct: 171 EIRITGQDTGVYGWDEGDRKLHRLLSEICEI--EGDFRVRVGMANPKGVHGIREELAEVF 228
Query: 293 -RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351
+ +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 229 AENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFPT 288
Query: 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----V 406
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E++ V
Sbjct: 289 ETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEAKREIV 348
Query: 407 FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKIT 463
EA+ +G E R + + + + AD + Y QV+V + G G +++T
Sbjct: 349 REAYADMVG-EVREDCLVVEQGTADSVKC--RDSAYRQVIVQNASEYGLEPGDFVDLEVT 405
Query: 464 SVGRWSVFGEVI 475
+ FGE +
Sbjct: 406 AHETMYAFGEPV 417
>gi|297529334|ref|YP_003670609.1| MiaB family RNA modification protein [Geobacillus sp. C56-T3]
gi|297252586|gb|ADI26032.1| RNA modification enzyme, MiaB family [Geobacillus sp. C56-T3]
Length = 449
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 224/459 (48%), Gaps = 37/459 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
V V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
R ++A G KE+ L+ TG YG D+ N LL + ++P G LRI I
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLRRLRISSIEASQIT 239
Query: 283 EH----LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ LK +++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P
Sbjct: 240 DEVIDVLKRSEKIVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPE 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + +D+I GFPGET+++F +T N I+E +F ++H+ + R GTPAARM ++
Sbjct: 294 LAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKH 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNML 454
R R L ++ + EG+V + E + L VG+T Y++V P+T M+
Sbjct: 354 DRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMV 413
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
G VKIT G GE +++ V D++A + + SS
Sbjct: 414 GELVKVKITKAGYPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|56421035|ref|YP_148353.1| hypothetical protein GK2500 [Geobacillus kaustophilus HTA426]
gi|261418482|ref|YP_003252164.1| MiaB family RNA modification protein [Geobacillus sp. Y412MC61]
gi|319767557|ref|YP_004133058.1| MiaB family RNA modification protein [Geobacillus sp. Y412MC52]
gi|56380877|dbj|BAD76785.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374939|gb|ACX77682.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC61]
gi|317112423|gb|ADU94915.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y412MC52]
Length = 449
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 224/459 (48%), Gaps = 37/459 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
V V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
R ++A G KE+ L+ TG YG D+ N LL + ++P G LRI I
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLKRLRISSIEASQIT 239
Query: 283 EH----LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ LK +++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P
Sbjct: 240 DEVIDVLKRSEKIVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPE 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + +D+I GFPGET+++F +T N I+E +F ++H+ + R GTPAARM ++
Sbjct: 294 LAVTSDVIVGFPGETEDEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKH 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNML 454
R R L ++ + EG+V + E + L VG+T Y++V P+T M+
Sbjct: 354 DRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMV 413
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
G VKIT G GE +++ V D++A + + SS
Sbjct: 414 GELVKVKITKAGYPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|397662316|ref|YP_006503016.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
gi|394350495|gb|AFN36409.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
equigenitalis ATCC 35865]
Length = 469
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 225/457 (49%), Gaps = 54/457 (11%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTLIAKCK 115
G + +Y+KTFGC N+ DSE MA L A G LTDN E+AD+ L+NT S + K
Sbjct: 29 GAKKLYIKTFGCQMNEYDSEKMADVLHAEKGLELTDNPEDADVILLNTCSIREKSQEKVF 88
Query: 116 S------------AKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK 160
S + + V GCV +G+ L+ V I+ G Q + R+ E++E+ K
Sbjct: 89 SDLGRINLLKKKKPELLIGVGGCVASQEGATILQRAPYVDIIFGPQTLHRLPELIEQ--K 146
Query: 161 GHEVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R P ++ LP R N + I GC C+YC + RG S +
Sbjct: 147 ESSGRAQVDVSFPEIEKFDHLPPARINGPTAFVSIMEGCSKYCSYCVVPYTRGEEISRPL 206
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
E ++ V + GVKE+ L ++ AY +G + I A++ EL D + RI
Sbjct: 207 EDVLIEVADLADQGVKEINLLGQNVNAYRGTVGEDGEIADFAMLLELIHDIPGVERIR-- 264
Query: 277 NPPFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
+I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV +
Sbjct: 265 ---YITSHPKEMTKRLIEAHAKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRS 321
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----- 386
L + PG+ +++D I GFPGET++DF T+ LIK+ + RPGTPAA
Sbjct: 322 LYKARPGLTLSSDFIVGFPGETEDDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDD 381
Query: 387 --------RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
R++++ A+V K+++E + + +EG +R D L+G
Sbjct: 382 TPYEVKLDRLQRL-QALVNKQAKEFSEKMLGTEQIILVEGFSKR--------DSNELMGR 432
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
T+ V + N++G V+IT V S+ GE++
Sbjct: 433 TENNRIVNFKGSENLIGQMVPVRITEVYTNSLRGELV 469
>gi|219668765|ref|YP_002459200.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfitobacterium hafniense DCB-2]
gi|219539025|gb|ACL20764.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
hafniense DCB-2]
Length = 447
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/438 (28%), Positives = 214/438 (48%), Gaps = 41/438 (9%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC ++ D++ + S GY + E+AD+ ++NT +SA + ++ K K
Sbjct: 15 YGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAENKILGKIGELKHLK 74
Query: 120 ------PLVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVR 165
+ ++GC+ Q L+ L + + R++E EE K EV
Sbjct: 75 EANPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEEAEEKGKVAEVW 134
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
R+ ++ L + K + I+ GC CTYC H RG S E ++ +R
Sbjct: 135 EKPRETQESVLLAA--KGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEIRA 192
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G +EV L ++ +YG+D+ + LL + + DG +R ++P + +
Sbjct: 193 LVETGCREVTLLGQNVNSYGQDLDRAYDFADLLKDVDS---IDGLWRVRFMTSHPKDLSD 249
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L E H C + +H+P Q+GSD +L MNR+YT + + + + ++P + + T
Sbjct: 250 KLIETIAAGTHLCEH--IHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKAIIPQVSLTT 307
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
DII GFPGET+EDF QT+ LI++ K+ Q + R GTPAA+M +++P + K+R ++
Sbjct: 308 DIIVGFPGETEEDFEQTLALIRQVKYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQQ 367
Query: 403 LTSVFEAFTPYLGMEGRVERIWIT-EIAADG------IHLVGHTKGYVQVLVPSTGNMLG 455
L +V A + + R E I T E+ +G L G T+GY V+ P ++G
Sbjct: 368 LITVQNAQS----LAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVVFPGEAQLIG 423
Query: 456 TSALVKITSVGRWSVFGE 473
T V I W++FGE
Sbjct: 424 TLVQVLIQDANSWTLFGE 441
>gi|75764337|ref|ZP_00743864.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74488177|gb|EAO51866.1| tRNA 2-methylthioadenosine synthase homolog [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 427
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 135/417 (32%), Positives = 211/417 (50%), Gaps = 30/417 (7%)
Query: 86 GYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLV---------VAGCVPQGS-RDLK 135
GY T+ ++AD+++INT + +T K + + V V GC Q S ++
Sbjct: 6 GYERTEYEKKADVYVINTCTVTNTGDKKSRQVIRRAVRQNPDAVICVTGCYAQTSPAEIM 65
Query: 136 ELEGVSIV-GVQQIDRVVEVVEETLKGHE----VRLLHRKKL-PALDLPKVRRNKFVEIL 189
+ GV IV G Q ++++ +EE K + VR + + ++ LD+P ++ L
Sbjct: 66 AIPGVDIVVGTQDREKMLGYIEEFRKERQPINAVRNIMKTRVYEELDVPYFT-DRTRASL 124
Query: 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI- 248
I GC CT+C ARG + S + ++ + + ++ G KE+ L+ TG YG DI
Sbjct: 125 KIQEGCNNFCTFCIIPWARGLMRSRDGKEVIKQAQQLVDAGYKEIVLTGIHTGGYGEDIK 184
Query: 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL-RHPCVYSFLHVPVQS 307
NL LL + AE+ G LRI I + E+ EVL + V LH+P+QS
Sbjct: 185 DYNLAGLLRDMEAEV--GGLKRLRISSIEASQISD---EVIEVLDKSEVVVRHLHIPLQS 239
Query: 308 GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367
GS+ VL M R+YT+ F+ +D L E +PG+ I +D+I GFPGET+E+F +T N IKE
Sbjct: 240 GSNTVLKRMRRKYTMEFFQERLDRLKEALPGLAITSDVIVGFPGETEEEFMETYNFIKEN 299
Query: 368 KFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYL--GMEGRVERIW 424
+F ++H+ + R GTPAARM+ +VP V R L + EG V I
Sbjct: 300 RFSELHVFPYSKRTGTPAARMEDQVPEDVKNDRVHRLIELSNQLAKEYASAFEGEVLEII 359
Query: 425 ITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 478
E DG VG+T Y++++ + ++G VKIT G + +++L
Sbjct: 360 PEEQFKDGDREGLYVGYTDNYLKIVFEGSEELIGKLVKVKITKAGYPYNEAQFVRVL 416
>gi|255656429|ref|ZP_05401838.1| putative radical SAM superfamily protein [Clostridium difficile
QCD-23m63]
gi|296450124|ref|ZP_06891885.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296878505|ref|ZP_06902510.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
gi|296260887|gb|EFH07721.1| 2-methylthioadenine synthetase [Clostridium difficile NAP08]
gi|296430312|gb|EFH16154.1| 2-methylthioadenine synthetase [Clostridium difficile NAP07]
Length = 432
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/435 (30%), Positives = 212/435 (48%), Gaps = 40/435 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTLIAKCK 115
T GC NQ ++E M GY ++ E AD+++INT +S K K
Sbjct: 8 TLGCKVNQYETEAMLELFEKDGYEQVNSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 116 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ + V GC Q S ++ ++E V++V G ++VE +++ +V +
Sbjct: 68 NPDAIIAVVGCYSQVSPEEILDIEEVNLVMGTNDRRKIVEEIKKINSSKKVSTVD----- 122
Query: 174 ALDLPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
D+ KV+ + +EI + I GC CTYC +ARG + S ++S+V V
Sbjct: 123 --DIMKVKAFEEIEISQTNGKTRAFMKIQDGCDRFCTYCIIPYARGRVRSRDIDSIVDEV 180
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ + +G KEV L+ +YG+D+ LL+ I + +R+ P +
Sbjct: 181 KKLANNGYKEVVLTGIHVASYGKDLKDRDIKLLDVIKQINKIEKIERIRLSSVEPILFTD 240
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ EVL+ V H+ +QSG D L MNR YT +++T+VD L +P + I T
Sbjct: 241 EF--VNEVLKMDKVCPHYHLSLQSGCDETLKRMNRRYTTLEYKTIVDRLRSKMPDVAITT 298
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
D+I GFPGET+E+F +T +KE + Q+HI ++ PR GTPAA M+ +V + RS +
Sbjct: 299 DVIVGFPGETNEEFKKTYEFLKEIELSQMHIFKYSPRKGTPAATMENQVDPQMKHFRSEQ 358
Query: 403 LTSV----FEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L ++ F F T ++G + V + E +G G T Y++V+V S N+ G
Sbjct: 359 LLNLSKVNFNKFATKFIGRKLDV----LFEQNLEGNKYEGLTSNYIRVVVESDKNIQGQI 414
Query: 458 ALVKITSVGRWSVFG 472
VKI V V G
Sbjct: 415 LKVKINDVKDEYVEG 429
>gi|403237548|ref|ZP_10916134.1| Putative methylthiotransferase yqeV [Bacillus sp. 10403023]
Length = 453
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/445 (29%), Positives = 221/445 (49%), Gaps = 38/445 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA--- 117
+ T GC N ++E + GY T+ AD+++INT + +T K +
Sbjct: 4 VAFHTLGCKVNHYETEAIWQLFKESGYERTEFESTADVYVINTCTVTNTGDKKSRQVIRR 63
Query: 118 ---KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV----- 164
K P + V GC Q S ++ + GV IV G Q +++E +++ + +
Sbjct: 64 AIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRKKMLEYIDQYKQERQPINGVG 123
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ + LD+P ++ L I GC CT+C ARG + S E ++ + +
Sbjct: 124 NIMKTRVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEEVIKQAQ 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G KE+ L+ TG YG D+ NL LL + +++ G +RI I +
Sbjct: 183 QLVNAGYKEIVLTGIHTGGYGEDMKDYNLAALLRDLESKVI--GLKRIRISSIEASQITD 240
Query: 284 HLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ E+ + V+RH LHVP+QSGS+ VL M R+YT+ F + L + +PG+
Sbjct: 241 EIIEVLDQSKKVVRH------LHVPLQSGSNTVLKRMRRKYTMEFFAERLTKLRQALPGL 294
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
+ +D+I GFPGET+E+F +T N I E+KF ++H+ + R GTPAARM+ ++ V +
Sbjct: 295 ALTSDVIVGFPGETEEEFMETYNFINEHKFSELHVFPYSKRTGTPAARMEDQIDEEVKNE 354
Query: 399 RSRELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGN 452
R L S+ + EG V + E+ D G++ +G+T Y++V +T +
Sbjct: 355 RVHRLISLSDQLAKEYASNYEGEVLEVIPEELDKDDPTSGLY-IGYTDNYLKVKFDATED 413
Query: 453 MLGTSALVKITSVGRWSVFGEVIKI 477
M+G VKIT G G+ +KI
Sbjct: 414 MIGKIVKVKITKAGYPYNEGKFVKI 438
>gi|427706129|ref|YP_007048506.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
gi|427358634|gb|AFY41356.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Nostoc sp. PCC 7107]
Length = 454
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 222/447 (49%), Gaps = 38/447 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNHADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 -------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
A LVVAGCV Q G L+ + + +V G Q +R+ +++E +G++V
Sbjct: 69 AKRKHEKADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFEGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ + RR+ K + + GC CTYC + RG S T E++ +
Sbjct: 129 TEAVHIME-DITQPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMVE 187
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KE+ L ++ AYGRD+ G +L + + V ++P G LR ++
Sbjct: 188 LGRQGYKEITLLGQNIDAYGRDLPGVTPEGRHLHTFTDLLYYVHDVP--GVERLRFATSH 245
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ + +
Sbjct: 246 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRKYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA + S V
Sbjct: 303 PDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEEV 362
Query: 397 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
K +R L ++ +A GR+E + + + + D ++G T+G
Sbjct: 363 KSDRLQRLNHLVNI-KAAARSQRYFGRIEEVLVEDQNSKDPTQVMGRTRGNRLTFFTGDI 421
Query: 452 NML-GTSALVKITSVGRWSVFGEVIKI 477
N L G VKIT V +S+ GE I++
Sbjct: 422 NELKGQLVKVKITEVRAFSLTGEPIEV 448
>gi|416390510|ref|ZP_11685519.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
gi|357264032|gb|EHJ12968.1| tRNA-i(6)A37 methylthiotransferase [Crocosphaera watsonii WH 0003]
Length = 452
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 142/445 (31%), Positives = 218/445 (48%), Gaps = 38/445 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ + + AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 ----AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
K P LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA ++ S VK
Sbjct: 304 DASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVK 363
Query: 398 K-RSRELTSVF--EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN- 452
R + L + +A GR+E + + + D ++G T+G L GN
Sbjct: 364 SDRLQRLNHLVAQKAAQRSQRYLGRIEEVLVEDQNPKDNSQVMGRTQG--NRLTFCKGNI 421
Query: 453 --MLGTSALVKITSVGRWSVFGEVI 475
+ G V+IT V +S+ GE I
Sbjct: 422 DELKGQLIKVEITEVRAFSLTGEAI 446
>gi|394994048|ref|ZP_10386784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
gi|393805127|gb|EJD66510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus sp.
916]
Length = 509
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 216/435 (49%), Gaps = 26/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + + EGR + + E + L G+T+ V + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 458 ALVKITSVGRWSVFG 472
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|240139952|ref|YP_002964429.1| tRNA modification enzyme MiaB, isopentenyl-adenosine A37 tRNA
methylthiolase [Methylobacterium extorquens AM1]
gi|418061495|ref|ZP_12699351.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
gi|240009926|gb|ACS41152.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens AM1]
gi|373564962|gb|EHP91035.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Methylobacterium extorquens DSM 13060]
Length = 446
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 135/444 (30%), Positives = 208/444 (46%), Gaps = 37/444 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NT + K S
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 118 ------------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 163 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDGILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 396
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 397 KKRSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + + A+ G + I + + + G T V + +
Sbjct: 359 TERLAALQDLLDRQRHAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 416
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+GT V+IT G S+FGE ++
Sbjct: 417 TIGTVVPVRITRAGSNSLFGETLE 440
>gi|154686118|ref|YP_001421279.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens FZB42]
gi|429505255|ref|YP_007186439.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|229890448|sp|A7Z4X2.1|MIAB_BACA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|154351969|gb|ABS74048.1| YmcB [Bacillus amyloliquefaciens FZB42]
gi|429486845|gb|AFZ90769.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 509
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 216/435 (49%), Gaps = 26/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + + EGR + + E + L G+T+ V + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 458 ALVKITSVGRWSVFG 472
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|312622276|ref|YP_004023889.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202743|gb|ADQ46070.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
kronotskyensis 2002]
Length = 471
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 208/449 (46%), Gaps = 51/449 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------I 111
++ T+GC N DSE +AG L+A GY T+N +EAD+ + NT S + +
Sbjct: 39 HIVTYGCQMNVHDSEKLAGILNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPL 98
Query: 112 AKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGH 162
+ K K L+ V GC+PQ ++L + I G + + + +++ T K
Sbjct: 99 KRLKEKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKT 158
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 159 VIDVSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRQPEEIIYE 218
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNL--PILLNAI-----------VAELPPDGST 269
+ + +G+KEV L ++ +YG+D+G N+ P LL + V P D S
Sbjct: 219 IEQLAQNGIKEVTLLGQNVNSYGKDLGNNITFPKLLEKVNEIKGIERIRFVTSHPKDLSD 278
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
L + M + + EH+ H+PVQSGS +L AMNR YT D+ +V
Sbjct: 279 ELIVAMRDLEKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLV 322
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM- 388
+ L +P + I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M
Sbjct: 323 EKLKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMP 382
Query: 389 KKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
+VP + +R + L + E A M GR I I + LVG T+ V
Sbjct: 383 NQVPDNIKHQRFQRLVKLVEEIALKKNRQMLGRTYEILIDGRSKRNNLLVGRTRTNKVVN 442
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVI 475
V + + VKI ++GEVI
Sbjct: 443 VKCSEEFMFKFVNVKILEAAEHWLYGEVI 471
>gi|302554591|ref|ZP_07306933.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
gi|302472209|gb|EFL35302.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces
viridochromogenes DSM 40736]
Length = 508
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 190/380 (50%), Gaps = 23/380 (6%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTQSAMDT 109
S + GT T ++T+GC N DSE +AG L GY A + EAD+ + NT + +
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLAGLLEDAGYVRAPEGSDGEADVVVFNTCAVREN 66
Query: 110 LIAKC---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 154
K K A +P + V GC+ Q RD +K+ V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKAGRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVL 126
Query: 155 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 212
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 272
++ + ++ADGV E+ L ++ AYG DIG + + A +G +R
Sbjct: 187 DRRPGDILAEIEALVADGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERVR 245
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 391
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 392 PSAVVKKRSRELTSVFEAFT 411
P VV++R L ++ E +
Sbjct: 364 PKKVVQERYERLVALQEEIS 383
>gi|375362347|ref|YP_005130386.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421731627|ref|ZP_16170750.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451346926|ref|YP_007445557.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
gi|371568341|emb|CCF05191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407073840|gb|EKE46830.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449850684|gb|AGF27676.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens IT-45]
Length = 509
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 216/435 (49%), Gaps = 26/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + + EGR + + E + L G+T+ V + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 458 ALVKITSVGRWSVFG 472
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|319649479|ref|ZP_08003635.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
gi|317398641|gb|EFV79323.1| YmcB protein [Bacillus sp. 2_A_57_CT2]
Length = 515
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 219/449 (48%), Gaps = 30/449 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG GY T++ E+A++ L+NT ++A + + +
Sbjct: 71 FYIRTYGCQMNEHDTEVMAGIFLGLGYEHTESVEDANVILLNTCAIRENAENKVFGELGH 130
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K KK + V GC+ Q ++ LK V ++ G I R+ +++E E
Sbjct: 131 LKHLKKENPDLLIGVCGCMSQEESVVNKILKTYNQVDMIFGTHNIHRLPNILQEAYMSKE 190
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVRR + I GC CTYC + RG S E ++
Sbjct: 191 MVIEVWSKEGDVIENLPKVRRGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 250
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G +E+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 251 EVRQLAAQGYQEITLLGQNVNAYGKDFE-DMNYGLGDLMDEMRKIDIPRVRFTTSHPRDF 309
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS VL M R+YT + +V + +P
Sbjct: 310 DDHLIEV--LAKGGNLVEHIHLPVQSGSTDVLKIMARKYTREQYLELVRKIKAAIPEATF 367
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII G+P ET+E F +T++L +E F + + PR GTPAA+M VP V K+R
Sbjct: 368 TTDIIVGYPNETEEQFEETISLYREVGFEAAYTFIYSPREGTPAAKMVDNVPMEVKKERL 427
Query: 401 RELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
+ L +V EA Y G VE + E + L G+T+ V +G
Sbjct: 428 QRLNAVVNELSAEAMKKYKGQ--TVEVLVEGESKNNPEILAGYTRKNKLVNFKGPKTAIG 485
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDK 484
VK+T WS+ GE+++ L+ V+ K
Sbjct: 486 KIVNVKVTDAKTWSLNGEMVEELDAVEVK 514
>gi|429727800|ref|ZP_19262556.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
gi|429151534|gb|EKX94398.1| tRNA methylthiotransferase YqeV [Peptostreptococcus anaerobius VPI
4330]
Length = 442
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 214/437 (48%), Gaps = 43/437 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTLIAKCK 115
T GC NQ ++E M GY + E AD+++INT +S K K
Sbjct: 8 TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 116 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ K + V GC Q S ++ E+E V++V G +V+ +EE L KL
Sbjct: 68 NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119
Query: 174 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDDIREE 179
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 180 ITTLAKNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + + +
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR GTPAA MK +V + RS
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQFRSD 356
Query: 402 ELTSV----FEAFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
L ++ F+ T Y+ GR + E+ +G + G + Y+++ V S ++ G
Sbjct: 357 ALLNLSKKNFKENTEKYI---GRPLNVLFEEVDKEG-YYEGLSDNYIRIKVKSDKDIRGQ 412
Query: 457 SALVKITSVGRWSVFGE 473
KI + GE
Sbjct: 413 ILEAKIVDIRDDYCIGE 429
>gi|307154937|ref|YP_003890321.1| MiaB family RNA modification protein [Cyanothece sp. PCC 7822]
gi|306985165|gb|ADN17046.1| RNA modification enzyme, MiaB family [Cyanothece sp. PCC 7822]
Length = 446
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 222/451 (49%), Gaps = 50/451 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
++ TFGC N++DSE MAG L GY +++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGYQWSEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 118 -----KKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
+KP L+VAGCV Q G + L+ + + +V G Q + + +++++ GH++
Sbjct: 69 AKRKHEKPDLTLIVAGCVAQQEGEKLLRRVPELDLVMGPQYANLLQDLLKQVEDGHQIVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR V +NV GC C+YC + RG S T +++ +
Sbjct: 129 TEPIHI-VEDITKPRRESRVSAW-VNVIYGCNERCSYCVVPNVRGVEQSRTPQAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEITLLGQNIDAYGRDLPGVTATGRHLHTLTDLLYYVNDVP--GIERIRFATS 244
Query: 277 NPPFILEHL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+P + E L KE+ +V H H+P QSG + +L AM R YT +R +++ +
Sbjct: 245 HPRYFTERLIVACKELPKVCEH------FHIPFQSGDNQILKAMKRGYTQEKYRQIIEKI 298
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 392
L+P I+ D I GFPGET+E F T+ L+ + F Q++ + + PRPGTPAA
Sbjct: 299 RSLMPDASISADAIVGFPGETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWDNQL 358
Query: 393 SAVVK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQV 445
S VK +R L + E YL GR E + + E+ + ++G T+G
Sbjct: 359 SEEVKSDRLQRLNHLVGIKAAERSQRYL---GRTEEVLVEEVNPKNPTQVMGRTRGNRLT 415
Query: 446 LVPSTGNML-GTSALVKITSVGRWSVFGEVI 475
N L G VKIT V +S+ G+++
Sbjct: 416 FFEGDINQLKGQIVSVKITEVRPFSLSGKIV 446
>gi|452855648|ref|YP_007497331.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079908|emb|CCP21666.1| enzyme for ms(2)i(6)A formation for tRNA modification [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 509
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 216/435 (49%), Gaps = 26/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + + EGR + + E + L G+T+ V + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 458 ALVKITSVGRWSVFG 472
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|163781959|ref|ZP_02176959.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159883179|gb|EDP76683.1| oxaloacetate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 441
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 130/441 (29%), Positives = 229/441 (51%), Gaps = 30/441 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKC 114
++KTFGC N +DSE + G L GY ++ EEAD+ L+NT + + + I +
Sbjct: 6 FIKTFGCQMNFNDSERIRGILRTLGYEPAESWEEADLILLNTCTIREKPDQKVLSHIGEY 65
Query: 115 KSAKKP-----LVVAGCVPQ--GSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHE-VR 165
K K+ + V+GC+ Q G +++ V I+ + ++ E++ + G++ V
Sbjct: 66 KKIKERNPNALIAVSGCLAQRAGWELVQKAPAVDIMFSSFNMHQLPELINQAQAGYKAVA 125
Query: 166 LLH---RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+L + D P R N + + I GC CTYC RG S ++ S++
Sbjct: 126 ILEAPPEDEDAVWDFPTERDNPYCAYVTIIKGCDKNCTYCVVPKTRGKERSRSMYSILEE 185
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 281
V+ ++ +GV+E+ L ++ A+G+D PI + ++ E+ DG +R +P +
Sbjct: 186 VKKLVDEGVREIHLLGQNVTAWGKDF--ERPIPFSELLYEVSKVDGVERIRFTTGHPKDL 243
Query: 282 LEHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ E +A++ P V + LH+P Q+GSD +L M+R+YT + ++ L E V +
Sbjct: 244 TDDTVEAMADI---PQVCNALHLPFQAGSDRILELMDRKYTKEFYLDRINRLKEAVEDIA 300
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
++TDII GFP ETDEDF T+++++E +F QV ++ PRPGTPAA M+ +VP V +R
Sbjct: 301 LSTDIIVGFPTETDEDFEHTLDVVREVEFEQVFSFKYSPRPGTPAAEMEGQVPDEVKTER 360
Query: 400 SRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L + +A L EG V+++ + E +G L+G T +LG
Sbjct: 361 MSRLLELQKAIMGKLSKRYEGTVQKVLVEEERGEGT-LIGRTTTNKWATFKGGRELLGKI 419
Query: 458 ALVKITSVGRWSVFGEVIKIL 478
V++ S +++ E+++++
Sbjct: 420 VKVRVESASPFNLECELLEVV 440
>gi|302558013|ref|ZP_07310355.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
gi|302475631|gb|EFL38724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces griseoflavus
Tu4000]
Length = 505
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 189/380 (49%), Gaps = 23/380 (6%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTQSAMDT 109
S + GT T ++T+GC N DSE ++G L GY A + +AD+ + NT + +
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGSDGDADVVVFNTCAVREN 66
Query: 110 LIAKC---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 154
K K A +P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 155 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 212
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 272
++ + ++A+GV E+ L ++ AYG DIG + + A DG +R
Sbjct: 187 DRRTGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIDGLERVR 245
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+P + + IA + P V LH+P+QSGSD VL AM R Y + +++ +
Sbjct: 246 FTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKV 303
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 391
+P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M ++
Sbjct: 304 RAAIPHAAISTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMDGQI 363
Query: 392 PSAVVKKRSRELTSVFEAFT 411
P VV++R L + EA +
Sbjct: 364 PKKVVQERYERLVELQEAIS 383
>gi|390440335|ref|ZP_10228674.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
gi|389836262|emb|CCI32800.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis sp. T1-4]
Length = 446
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 144/447 (32%), Positives = 216/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G KE+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYKEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + VL AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDDQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTGG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
N + G VKIT V +S+ G +
Sbjct: 420 NIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|289522346|ref|ZP_06439200.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504182|gb|EFD25346.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 453
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 215/441 (48%), Gaps = 30/441 (6%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC----------- 114
+GC NQ D + + L G+ TD +E AD +I T S + K
Sbjct: 13 YGCQMNQYDGDRLRTSLIRRGWIETDRNE-ADAVVIVTCSIREKAEQKVLSEIGRYGKLY 71
Query: 115 KSAKKPLV-VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLH-- 168
K+ KPL+ V GC+ Q G+ L+ V +V G + I V + +E ++ V L
Sbjct: 72 KTKGKPLLAVIGCMAQNMGADLLRRFPQVKVVAGPRHIGWVPDALENAMRHKTVLYLDED 131
Query: 169 -RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVI 227
R+ + D P +R N + + I GC CTYC + RG S ++ V ++
Sbjct: 132 PREMIDLHDAPMIRSNPYKAFVTIAHGCDNFCTYCIVPYVRGRFVSRRPGEILKEVSELV 191
Query: 228 ADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
DGV EV L ++ +YG+D+ LL VA++P G +R ++P E +
Sbjct: 192 DDGVLEVTLLGQNVDSYGKDLKESYRFSNLLQD-VAKVP--GLLRVRFTTSHPRDFTEDV 248
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
E C +++P+QSGSD +L MNR YT+ D+ ++ L E +P + I +D+
Sbjct: 249 IEAMAEESKIC--PAVNLPIQSGSDRILKKMNRGYTVEDYGRIIKRLREALPEVSITSDL 306
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGET+EDF T+ ++K +F VH + + PR GTPAA M ++P K+R +
Sbjct: 307 IVGFPGETEEDFQCTLEMLKTMEFDLVHTASYSPREGTPAANMSNQIPEEEKKRRLSIVN 366
Query: 405 SVFEA--FTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVK 461
+ +A F +EG+ + + + A G ++ G T VLVP +MLG V+
Sbjct: 367 ELQDAISFKKNKILEGKFFEVLLDDFAPKGKGMLQGRTPTDKVVLVPGDESMLGKLCEVR 426
Query: 462 ITSVGRWSVFGEVIKILNQVD 482
IT W ++GE++ + D
Sbjct: 427 ITGASNWYLYGEIVSFRDFSD 447
>gi|121534805|ref|ZP_01666625.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
gi|121306600|gb|EAX47522.1| RNA modification enzyme, MiaB family [Thermosinus carboxydivorans
Nor1]
Length = 432
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 208/423 (49%), Gaps = 37/423 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCK-- 115
T GC NQ ++E + G GY + E AD+++INT S LI +
Sbjct: 8 TLGCKVNQFETEVIEGLFKQRGYTIVSFDEPADVYVINTCSVTHLGEKKSRQLIRRAARV 67
Query: 116 SAKKPLVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLL----- 167
+ + +V GC Q S D + + GV IVG Q R+V++VEE + +V +
Sbjct: 68 NPEAVIVATGCYAQVSPDKVAAIPGVDVIVGTQDRGRIVDLVEEARRTRGQVNAVTDIME 127
Query: 168 --HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ +P D P R L I GC CTYC +ARG L S +++S+
Sbjct: 128 AEQFEDIPIFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLDSVKREAEK 183
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+IA G KE+ L+ GAYGRD+G L L +A+ L G LR+ + + L
Sbjct: 184 LIATGFKEIVLTGIHLGAYGRDMGDGLE-LADAVETVLSVAGLVRLRLSSLESVEVSDRL 242
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
+A + R + LH+P+Q+G D VLS MNR YT ++ +V + VP + + TD+
Sbjct: 243 --VALMRRDAKLCPHLHLPLQAGDDHVLSQMNRHYTTEEYSRLVGDIRRRVPDLAVTTDV 300
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGET F ++ ++ F +VHI + R GTPAA +VP K+R RE+
Sbjct: 301 IVGFPGETPTMFANSLAFVERMAFAKVHIFPYSRRSGTPAATYPNQVPEEEKKRRVREMQ 360
Query: 405 SVFE----AF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
V E AF ++G E V + E A DG+ L G T Y++V +++GT +
Sbjct: 361 RVAEKGAAAFLAAFVGREMEV----LFETANDGV-LDGLTGNYIRVYTRGGVDLVGTLGV 415
Query: 460 VKI 462
V++
Sbjct: 416 VRL 418
>gi|188586121|ref|YP_001917666.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|229890572|sp|B2A3X6.1|MIAB_NATTJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|179350808|gb|ACB85078.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 451
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 217/444 (48%), Gaps = 36/444 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y TFGC N+ DSE +AG L G+ + EEAD+ +INT + A ++ K +
Sbjct: 12 FYTLTFGCQMNEHDSEVLAGMLDQMGFEKAASEEEADLLIINTCAVREKAEQKVLGKIGT 71
Query: 117 AK-----KP---LVVAGCVPQ----GSRDLKELEGVSIV-GVQQIDRVVEVVEETL-KGH 162
+ KP + + GC+ Q ++ ++ V I+ G I+R +++E + KG
Sbjct: 72 LRYLKENKPDMKIAIGGCMVQQEHVANKIYRDFTHVDIIFGTHNINRFPQLLEHVMQKGK 131
Query: 163 EVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V+ + + + LP R + + I+ GC C YC + RG S E +
Sbjct: 132 RVKEISQDDSQVFENLPHKREDSIKAWVVISYGCDNYCKYCIVPYVRGQQRSRDPEHIKY 191
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP- 279
V + +G+KE+ L ++ +YG+D+ N I ++ EL +G +R ++P
Sbjct: 192 EVEKLAKEGLKEITLLGQNVNSYGKDLDQN--ISFTNLLEELSKIEGIERIRFMTSHPKD 249
Query: 280 ---FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
++ LKE ++ H H+PVQ+GS+ +L M R YT + +V+ + +
Sbjct: 250 FDKELITTLKESNKICEH------FHLPVQAGSNKILKKMGRGYTREHYVDIVNDIRAEL 303
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
P I TDII G+PGE +EDF +T++L++ KF + R GTPAA M ++V
Sbjct: 304 PNASITTDIIVGYPGEEEEDFQETLDLVQNVKFDSAFTFVYSKRSGTPAAEMAEQVDEQT 363
Query: 396 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGN 452
K R ++L SV + + +E V+RI + ++ + ++ G T+ V P
Sbjct: 364 KKGRIQKLISVQQEISEQRNKDLENTVQRILVEGVSKNNEDMLSGRTRTDKLVHFPGDKE 423
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
++G VKIT W+++GE+ +
Sbjct: 424 LIGELVDVKITRGHSWNLYGEIFE 447
>gi|383830897|ref|ZP_09985986.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora xinjiangensis XJ-54]
gi|383463550|gb|EID55640.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora xinjiangensis XJ-54]
Length = 502
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 190/372 (51%), Gaps = 31/372 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL--- 110
T T ++TFGC N DSE +AGQL GYAL + E+ DI ++NT ++A + L
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALATDGEDPDIVVLNTCAVRENADNKLYGH 61
Query: 111 ---IAKCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+ KSAK + +A GC+ Q R ++ V +V G I + ++E
Sbjct: 62 LGHLRAAKSAKPGMQIAVGGCLAQKDRGEIVRRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILESLQTFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 278
V ++A+GV EV L ++ +YG + G L A L GS + R+ T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRL-----AFGKLLRSCGSVEGLERVRFTSP 236
Query: 279 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
F + + +AE V LH+P+QSGSD VL AM R Y S F +++D + +
Sbjct: 237 HPAAFTDDVIDAMAETSN---VCHQLHMPLQSGSDRVLKAMRRSYRSSRFLSILDRVRDA 293
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 394
+P I TDII GFPGETDEDF QT++++++ +F Q+ PRPGTPAA M +VP
Sbjct: 294 MPDAAITTDIIVGFPGETDEDFEQTLDVVRQARFSSAFTFQYSPRPGTPAAEMDGQVPKE 353
Query: 395 VVKKRSRELTSV 406
VV++R L +
Sbjct: 354 VVQERYDRLVEL 365
>gi|334137185|ref|ZP_08510629.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
gi|333605269|gb|EGL16639.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Paenibacillus sp. HGF7]
Length = 494
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 137/439 (31%), Positives = 219/439 (49%), Gaps = 30/439 (6%)
Query: 62 YM-KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
YM +T+GC N+ D+E M G L GY T+ +EAD+ L+NT ++A D + +
Sbjct: 53 YMIRTYGCQMNEHDTETMKGMLEELGYTSTEEKQEADVILLNTCAIRENAEDKVFGELGH 112
Query: 117 AK-----KP---LVVAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K KP L V GC+ Q R L++ V ++ G I R+ ++++ E
Sbjct: 113 LKHLKLEKPNLVLGVCGCMSQEEGVVKRILQKHGHVDLIFGTHNIHRLPALLQDAYLSKE 172
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPK +R + I GC CTYC + RG S E ++
Sbjct: 173 MVVEVWSKEGDIIENLPK-KREGMRAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLA 231
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + G KE+ L ++ AYG+D ++ ++A++ +R ++P
Sbjct: 232 EVRDLARQGFKEITLLGQNVNAYGKDFE-DISYSFGDLMADMRKIDVPRIRFTTSHPRDF 290
Query: 282 LEHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+HL EVL H + +H+PVQSGS VL M+R+Y+ + +V + +P +
Sbjct: 291 DDHL---VEVLAHKGNLMEHIHLPVQSGSTEVLKRMSRKYSRELYLDLVRKIKTAIPDVV 347
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
++TDII GFPGETDE F +T++L+KE +F + + PR GTPAA M+ VP V K+R
Sbjct: 348 LSTDIIVGFPGETDEQFEETLSLVKEVRFDFAYSFIYSPREGTPAAAMEDNVPEDVKKER 407
Query: 400 SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLGT 456
L V AF+ + R E + + + L G T+ VL + N++G+
Sbjct: 408 LYRLNEVLGAFSKESNEKLRGEVVEVLVEGESKKNSEVLSGRTRTNKLVLFRGSKNLIGS 467
Query: 457 SALVKITSVGRWSVFGEVI 475
A V++T W V GE++
Sbjct: 468 FAHVRVTEPQTWLVKGELV 486
>gi|113474257|ref|YP_720318.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Trichodesmium
erythraeum IMS101]
gi|123057124|sp|Q119H9.1|MIAB_TRIEI RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|110165305|gb|ABG49845.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Trichodesmium erythraeum
IMS101]
Length = 451
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 218/446 (48%), Gaps = 42/446 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
++ TFGC N++DSE MAG L G +++ +ADI L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILDNMGLISSEDPNKADIILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 118 -----KKP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 164
K+P L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G++V
Sbjct: 69 AKRKHKQPDLTLIVAGCVAQQEGAALLRRVPELD--LIMGPQHANRLQDLLEQVFNGNQV 126
Query: 165 RLLHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ D+ K RR+ K + I GC CTYC RG S T E++ +
Sbjct: 127 VATEPIHI-VEDITKPRRDSKITAWVNIIYGCNEHCTYCVVPSVRGVEQSRTPEAIRAEM 185
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGM 275
+ G +E+ L ++ AYGRD+ G N + + V ++P G +R
Sbjct: 186 EELGRQGYQEITLLGQNIDAYGRDLPGVTKEGRNKYTFTDLLYYVHDVP--GVERIRFAT 243
Query: 276 TNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
++P + E L + AE+ P V H+P QSG + +L AM R YT +R ++D + E
Sbjct: 244 SHPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNKLLKAMARGYTHEKYRRIIDKIRE 300
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
L+P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRPGTPAA +
Sbjct: 301 LMPDASISADAIVGFPGETEAQFENTLKLVEDIGFDQLNTAAYSPRPGTPAALWENQLGE 360
Query: 395 VVK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVP 448
VK +R L V A M GR+E + + ++ + ++G T+G +
Sbjct: 361 EVKSDRLQRLNHLVGVKAADRSQRYM-GRIEEVLVEDMNPKNAAQVMGRTRGNRLTFFEG 419
Query: 449 STGNMLGTSALVKITSVGRWSVFGEV 474
+ G VKIT V +S+ GEV
Sbjct: 420 DIAQLKGKLVKVKITEVRPFSLTGEV 445
>gi|375009588|ref|YP_004983221.1| 2-methylthioadenine synthetase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359288437|gb|AEV20121.1| 2-methylthioadenine synthetase [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 449
Score = 178 bits (452), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 224/459 (48%), Gaps = 37/459 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
V V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYIEQFQRERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
R ++A G KE+ L+ TG YG D+ N LL + ++P G LRI I
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFASLLRDLDEQVP--GLKRLRISSIEASQIT 239
Query: 283 EH----LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ LK +++RH LH+P+QSGS+ VL M R+YT+ + + L E+ P
Sbjct: 240 DEVIDVLKRSEKIVRH------LHIPLQSGSNTVLKRMRRKYTVEFYAERLARLREVFPE 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + +D+I GFPGET+++F +T N I+E +F ++H+ + R GTPAARM ++
Sbjct: 294 LAVTSDVIVGFPGETEDEFIETYNFIREQRFSELHVFPYSKRTGTPAARMPNQIDEETKH 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHL-VGHTKGYVQVLVPSTGNML 454
R R L ++ + EG+V + E + L VG+T Y++V P+T M+
Sbjct: 354 DRVRRLIALSDQLAKEYASRFEGQVLEVIPEERDKERPDLYVGYTDNYLKVRFPATEEMV 413
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
G VKIT G GE +++ V D++A + + SS
Sbjct: 414 GELVKVKITKAGYPYNEGEFVRV---VPDEMARSVKWSS 449
>gi|145590038|ref|YP_001156635.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|229890594|sp|A4T007.1|MIAB_POLSQ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|145048444|gb|ABP35071.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 448
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 135/445 (30%), Positives = 227/445 (51%), Gaps = 33/445 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINT----QSAMDTLIA--- 112
+Y+KTFGC N+ DS MA L A G +TD E+AD+ L+NT + A D + +
Sbjct: 4 LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSDLG 63
Query: 113 ---KCKSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHE 163
+ K K ++ V GCV +G + + V +V G Q + R+ +++ + K G
Sbjct: 64 RLRELKKTKPHMLIGVGGCVASQEGRQIVSRAPYVDVVFGPQTLHRLSDLIAQRRKTGLS 123
Query: 164 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ ++ D LP R+ + + I GC C+YC + RG S + ++
Sbjct: 124 QVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTE 183
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNP 278
V + + GVKE+ L ++ AY +G I LL +AE+P G +R ++P
Sbjct: 184 VAGLASKGVKEIVLLGQNVNAYLGKMGDAEEIADFALLIEYIAEIP--GVERIRFTTSHP 241
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ L ++ + P + S LH+PVQ GSD++LSAM R YT ++++++ + + P
Sbjct: 242 KEFTQRLIDVYA--KVPKLVSHLHLPVQHGSDSILSAMKRGYTALEYKSIIRKMRAVRPD 299
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ +++D I GFPGETD DF + + +++E F F PRPGTPAA + P V
Sbjct: 300 LTLSSDFIVGFPGETDADFEKLLKMVQELDFDNSFCFIFSPRPGTPAANLSDDTPYEVKL 359
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTK-GYVQVLVPSTGN-- 452
KR + L ++ E + + M G+ ER+ I +A DG++L G + V P N
Sbjct: 360 KRLQTLLALIEGQSNQISQKMLGKTERVLIEGLAKDGVNLQGRAENNRVIHFSPPDQNID 419
Query: 453 -MLGTSALVKITSVGRWSVFGEVIK 476
++G ++IT V +++ GE+++
Sbjct: 420 GLIGEMVDIRITEVLNYTLRGELVE 444
>gi|392957221|ref|ZP_10322745.1| hypothetical protein A374_10790 [Bacillus macauensis ZFHKF-1]
gi|391876628|gb|EIT85224.1| hypothetical protein A374_10790 [Bacillus macauensis ZFHKF-1]
Length = 450
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 133/444 (29%), Positives = 216/444 (48%), Gaps = 28/444 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
++ T GC N ++E + A GY + + AD+++INT + +T K +
Sbjct: 3 SVAFHTLGCKVNHYETEAIWQLFQADGYERREFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQ----IDRVVEVVEETLKGHEV 164
K P + V GC Q S ++ + GV IV G Q + + + EE L + V
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKMLTYIAQFKEERLPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S ++ +
Sbjct: 123 SNIMKARVYEELDVPSFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDASEVITQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ T YG D+ N +LL + ++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTAGYGEDLKDYNFAMLLKELDEKVV--GLKRLRISSIEASQIT 239
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + IA + + LH+P+QSGSD+VL M R+YT+ F + L + +PG+ I
Sbjct: 240 DEV--IAVMDASDTIVPHLHIPLQSGSDSVLRRMRRKYTMDMFADRIGKLKKALPGLAIT 297
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
+D+I GFPGET+E+F +T N I+++KF ++H+ + R GTPAARM+ +VP V +R
Sbjct: 298 SDVIVGFPGETEEEFMETYNFIRDHKFSELHVFPYSKRTGTPAARMEDQVPEDVKNERVH 357
Query: 402 ELTSVFEAFTPYLGMEGRVERIWIT---EIAADGI--HLVGHTKGYVQVLVPSTGNMLGT 456
L + E + + E +G+ H VG+T Y++V P+ +M+G
Sbjct: 358 RLIELSNQLAKEYASHYENEVVDVIPEEEYKEEGVTGHFVGYTSNYLKVRFPAREDMIGK 417
Query: 457 SALVKITSVGRWSVFGEVIKILNQ 480
VKIT G G+ + IL +
Sbjct: 418 LVKVKITKAGYPYNDGQFVTILEE 441
>gi|449094387|ref|YP_007426878.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
gi|449028302|gb|AGE63541.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus subtilis XF-1]
Length = 520
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 217/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 138
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 139 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 198
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 199 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 259 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 317
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 318 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKAAMPNASL 375
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 376 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 435
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 436 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 495
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 496 VRVKIQQAKTWSLDGEMV 513
>gi|344996160|ref|YP_004798503.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Caldicellulosiruptor lactoaceticus 6A]
gi|343964379|gb|AEM73526.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Caldicellulosiruptor lactoaceticus 6A]
Length = 471
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 207/449 (46%), Gaps = 51/449 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------I 111
++ T+GC N DSE +AG L+A GY T+N +EAD+ + NT S + +
Sbjct: 39 HIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPL 98
Query: 112 AKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGH 162
+ K K L+ V GC+PQ ++L + I G + + + +++ T K
Sbjct: 99 KRLKDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKT 158
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 159 VIDVSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYE 218
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAI-----------VAELPPDGST 269
+ + +GVKEV L ++ +YG+D+G + P LL + V P D S
Sbjct: 219 IEQLAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEKVNEIKGIERIRFVTSHPKDLSD 278
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
L + M + + EH+ H+PVQSGS +L AMNR YT D+ +V
Sbjct: 279 ELIVAMRDLEKVCEHI----------------HLPVQSGSTRILKAMNRHYTKEDYLRLV 322
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM- 388
+ L +P + I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M
Sbjct: 323 EKLKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMP 382
Query: 389 KKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
+VP + +R ++L + E A M G+ I I + LVG T+ V
Sbjct: 383 NQVPDDIKHQRFQQLVKLIEEIALKKNRQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVN 442
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVI 475
V + VKI ++GEVI
Sbjct: 443 VKCPEEFMFKFVNVKILEAAEHWLYGEVI 471
>gi|308173664|ref|YP_003920369.1| tRNA modification protein [Bacillus amyloliquefaciens DSM 7]
gi|384159316|ref|YP_005541389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|384164249|ref|YP_005545628.1| AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|384168363|ref|YP_005549741.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385264828|ref|ZP_10042915.1| MiaB [Bacillus sp. 5B6]
gi|307606528|emb|CBI42899.1| putative conserved AdoMet radical enzyme for tRNA modification
[Bacillus amyloliquefaciens DSM 7]
gi|328553404|gb|AEB23896.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
amyloliquefaciens TA208]
gi|328911804|gb|AEB63400.1| putative AdoMet radical enzyme for tRNA modification [Bacillus
amyloliquefaciens LL3]
gi|341827642|gb|AEK88893.1| (dimethylallyl)adenosine tRNA [Bacillus amyloliquefaciens XH7]
gi|385149324|gb|EIF13261.1| MiaB [Bacillus sp. 5B6]
Length = 509
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 216/435 (49%), Gaps = 26/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDHLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + + EGR + + E + L G+T+ V + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 458 ALVKITSVGRWSVFG 472
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|448342799|ref|ZP_21531744.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
gi|445624632|gb|ELY78008.1| MiaB-like tRNA modifying enzyme [Natrinema gari JCM 14663]
Length = 417
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 210/408 (51%), Gaps = 38/408 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQG-SRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKK 171
L + GC + QG + D +++G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQGEAFDRADVDG-------QVLHWDEVPEAVTNG-ECPTTTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 117 EPILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G L LL I DG +R+GM NP + +E+A
Sbjct: 170 KEIRITGQDTGVYGWDEGNRKLHRLLEEIC---EIDGDFRVRVGMANPKGVHGIREELAA 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y FLH PVQSGSD VL M R++ ++++ VV+T + + ++TD I GF
Sbjct: 227 VFAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVAEYVEVVETFDDYLDYWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P ET+ D Q++ L++E + ++++++F RPGT AA +K + V K+RS+E+++
Sbjct: 287 PTETERDHEQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTVKKERSKEMSAVKRD 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
V +A+ +G E R + + + E AD + Y Q++V + +
Sbjct: 347 LVADAYADMVG-EVREDVLVVEEGTADSVKC--RDSAYRQLIVQNASD 391
>gi|312143592|ref|YP_003995038.1| MiaB family RNA modification protein [Halanaerobium
hydrogeniformans]
gi|311904243|gb|ADQ14684.1| RNA modification enzyme, MiaB family [Halanaerobium
hydrogeniformans]
Length = 442
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 217/441 (49%), Gaps = 38/441 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------IAKCKSA 117
T+GC N+ DSE +AG L GY T+ E ADI L+NT + + + + K
Sbjct: 11 TYGCQMNEHDSEKLAGMLENIGYNNTNKLENADIVLLNTCTIRENAELKVFGKLGQLKEY 70
Query: 118 KKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE--VR 165
K+ + + GC+ Q ++E+ I G I +V E++++ K E V
Sbjct: 71 KRKNPDLIIGIGGCMMQLEEPVEEIYKKYRHVDLIFGTHNIHQVPELIKKIEKNRERVVE 130
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ +++ DLP R ++ + I GC CTYC + RG S +E+++
Sbjct: 131 VWDQEEGLIPDLPSQRESEHSAWISIIQGCDNFCTYCIVPYVRGRERSRPLEAIIKEAEK 190
Query: 226 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ A+GVKEV L ++ +YG D+ ++ P+LL + D +R ++P E
Sbjct: 191 LAAEGVKEVTLLGQNVNSYGNDLAEEIDFPLLLEELNK---VDSLARIRFMTSHPRDFSE 247
Query: 284 HL----KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
L K + +V +H +H+P+QSGS+ +L MNR Y+ + V + +P
Sbjct: 248 KLLLAIKNLEKVAKH------IHLPIQSGSNKILKEMNRGYSREYYIDTVKEIQNKMPEA 301
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKK 398
I+TD I GFPGE+DEDF QT+ L+KE +F + + PR GTPAA R ++ V K+
Sbjct: 302 AISTDFIVGFPGESDEDFEQTLKLVKELRFDMAYTFIYSPRSGTPAAKREDQIAEEVKKE 361
Query: 399 RSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV-LVPSTGNMLG 455
R +L + ++ + G++++I +T + ++ G ++ + +++G
Sbjct: 362 RLNKLMDIQNRISYQKNQKLIGKIQKILVTGPSNRDENVYEGRTGTNKICFINKRPDLIG 421
Query: 456 TSALVKITSVGRWSVFGEVIK 476
VKI S W++ G V++
Sbjct: 422 KIVKVKIDSAKSWTLQGTVVE 442
>gi|425447602|ref|ZP_18827587.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
gi|389731777|emb|CCI04191.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9443]
Length = 446
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 142/447 (31%), Positives = 216/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYIHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDNQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
N + G VKIT V +S+ G +
Sbjct: 420 NIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|304316819|ref|YP_003851964.1| MiaB family RNA modification protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778321|gb|ADL68880.1| RNA modification enzyme, MiaB family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 471
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 216/443 (48%), Gaps = 36/443 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+++T+GC N DSE +AG L+ GY TDN E+AD+ L NT + A + +
Sbjct: 35 FHIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQ 94
Query: 117 AK-----KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE 163
K KP L + GC+ Q ++ ++ + IV G + + E+++E+L
Sbjct: 95 LKELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDT 154
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + K D+P R + I GC CTYC + RG S ++
Sbjct: 155 TIIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILN 214
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGV-----NLPILLNAIVAELPPDGSTMLRIGMT 276
++++ +G KE+ L ++ +YG D+ + +L ++N I DG +R +
Sbjct: 215 EIKSLANEGFKEITLLGQNVNSYGNDLPIKIDFADLLYMINDI------DGIERIRFMTS 268
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P I + L L C + LH+PVQSGS+ +L MNR+Y+ + +++ L + +
Sbjct: 269 HPKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNI 326
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
PG+ I TDII GFPGETD+DF T++L+KE ++ + + R GTPA +M +V +
Sbjct: 327 PGIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKGTPAEKMSNQVDEDI 386
Query: 396 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGN 452
KR EL ++ + M+G+V + + + D L G T+ V +
Sbjct: 387 KHKRLEELINLQNIISIEKNNEMKGKVVEVLVEGTSKRDSEKLTGRTRTNKIVHFKAKPE 446
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
++G VKI W++ GE+I
Sbjct: 447 LIGKFVNVKIIDTKAWTMQGELI 469
>gi|302874325|ref|YP_003842958.1| MiaB family RNA modification protein [Clostridium cellulovorans
743B]
gi|307689408|ref|ZP_07631854.1| RNA modification enzyme, MiaB family protein [Clostridium
cellulovorans 743B]
gi|302577182|gb|ADL51194.1| RNA modification enzyme, MiaB family [Clostridium cellulovorans
743B]
Length = 433
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 201/417 (48%), Gaps = 23/417 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC N +SE M + + GY + D E+A++++INT + + I+K K
Sbjct: 7 TLGCRVNIYESEAMTEKFKSEGYDVVDFDEKAEVYVINTCTVTNMGDKKSRQYISKAKKK 66
Query: 118 KKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV-----RLLH 168
VVA GC Q S D + +EGV +V G + +V V + E +L
Sbjct: 67 NPEAVVAVVGCYSQTSPDEVSAIEGVDVVLGTRNKGDIVYYVNRAMDTKEKFVVVKDVLR 126
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
K L + K L + GC C+YC +ARG + S E+++ V +
Sbjct: 127 NKVFEELKIEDFE-GKTRAFLKVQDGCNRFCSYCLIPYARGAVCSKNPETIIDEVNKLAD 185
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+G KE+ LS +YG D+ L++ I +G +RIG P F + + E
Sbjct: 186 NGFKEIILSGIHIASYGVDLE-ERKTLMDIIEEIHKINGIKRIRIGSVEPRFFTDEVIEK 244
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+ C + H+ +QSG DA L MNR+YT ++ V L E +P + I TD+I G
Sbjct: 245 MASMEKMCPH--FHLSLQSGCDATLKRMNRKYTAEEYFNTVVKLRERIPNVSITTDVIVG 302
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 407
FPGET E+FN+T N +KE + ++HI ++ PR GT AA MK V + ++RS+ L +
Sbjct: 303 FPGETAEEFNETFNYLKELRVAKMHIFKYSPRKGTKAADMKDDVHGTIKEERSKLLQELD 362
Query: 408 EAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ G + + E D +G+T Y++V++ ST +++G V++
Sbjct: 363 RENEKNFIQDFIGEKLEVLVEEKLKDDNRYIGYTSNYIKVIIDSTEDIVGKIITVRL 419
>gi|428279299|ref|YP_005561034.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
gi|291484256|dbj|BAI85331.1| hypothetical protein BSNT_02749 [Bacillus subtilis subsp. natto
BEST195]
Length = 509
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 217/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVVEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKTAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|374296083|ref|YP_005046274.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Clostridium clariflavum DSM 19732]
gi|359825577|gb|AEV68350.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Clostridium clariflavum DSM 19732]
Length = 475
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 214/437 (48%), Gaps = 28/437 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC------- 114
Y++TFGC N+ DSE +AG L+ GYA N E +D+ + NT + K
Sbjct: 42 YIETFGCQMNEHDSEKLAGMLNEMGYAEGSNMENSDLIIYNTCCVRENAELKVYGHLGPM 101
Query: 115 KSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE- 163
K KK + V GC+ Q ++ ++ V I G + + E++ + +
Sbjct: 102 KHLKKDNPDLIIAVCGCMMQQPEVVEHIKKVYRHVDLIFGTHNLYKFPELLYNAISSDQT 161
Query: 164 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ ++ L A D+P R++ F + + GC C+YC + RG S +V
Sbjct: 162 VIEIMDSIGLIAEDVPIQRKDGFKAWVTVMYGCNNFCSYCIVPYVRGRERSREFGKIVEE 221
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFI 281
V+ + GVKE+ L ++ +YG+D+G + I ++ EL +G +R ++P +
Sbjct: 222 VKMLGQQGVKEITLLGQNVNSYGKDLGGD--ISFARLLTELNKVEGIERIRFMTSHPKDL 279
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L L C + LH+P Q+GS +L MNR+YT D+ +V+ + + +P + +
Sbjct: 280 SDELIYAMRDLDKLCEH--LHLPFQAGSTKILKEMNRKYTKEDYLRLVEKIKQNIPDISL 337
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVKKRS 400
TDII GFPGET+EDF T+ ++++ +F Q + + R GTPAA+ + ++P V K+R
Sbjct: 338 TTDIIVGFPGETEEDFQDTLVVVEKVRFDQAYTFLYSKRTGTPAAKSLNQIPEEVKKERF 397
Query: 401 RELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + + + +VE + + + + G T+G V ++G
Sbjct: 398 QRLLELQNRISKEINDSYLNKKVEVLVEGKSKTNEKNYTGRTRGNKVVNFQGDDQLIGKL 457
Query: 458 ALVKITSVGRWSVFGEV 474
VKI +V WS+ G +
Sbjct: 458 VTVKINTVKTWSLEGNI 474
>gi|357039505|ref|ZP_09101298.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
gi|355357868|gb|EHG05638.1| RNA modification enzyme, MiaB family [Desulfotomaculum gibsoniae
DSM 7213]
Length = 456
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 218/462 (47%), Gaps = 60/462 (12%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
+ + T GC NQ +S + GY + D AD+++INT + LI +
Sbjct: 6 VALTTLGCKVNQYESAALEELFRRRGYQVVDFDSPADVYIINTCTVTHLGDRKSRQLIRR 65
Query: 114 CKSAKKPLVVA--GCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHR 169
VVA GC Q + D + +EGV +VG +V++VE KG +V+ +
Sbjct: 66 AGRTNPEAVVAVTGCYAQTAPDEVLNVEGVDLVVGAGHRAEIVDLVENVSKGRKVKAVED 125
Query: 170 -------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
++LP + + + L I GC C+YC +ARG L S + E+++
Sbjct: 126 IARCHDFEELPG----ESHQGRVRAFLKIQEGCENYCSYCIIPYARGPLRSRSPENVLAG 181
Query: 223 VRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNP-- 278
VR ++ G KEV L+ TGAYGR GV+L LL A++A +P G LR+ P
Sbjct: 182 VRNLVESGFKEVVLTGIHTGAYGRGNQDGVDLVGLL-ALLANVP--GLVRLRLSSLEPND 238
Query: 279 --PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P +L+ + RH LH+P+QSG D +L M R Y + FR ++ ++ + +
Sbjct: 239 ITPDLLDLMAAGPPFCRH------LHIPLQSGDDYILKRMRRRYDTNYFRRLLASVRDKL 292
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
P + I TDI+ GFPGE DE F +KE +F +H+ ++ PR GTPAA +V V
Sbjct: 293 PEVGITTDIMVGFPGEEDEHFRNGCTFVKEMQFSALHVFKYSPRRGTPAAGFPDQVDPRV 352
Query: 396 VKKRSRELTSVFEAFTPYLGME--GRVERIWITE--------------------IAADGI 433
++RSR+L +V + GR + + + + A G
Sbjct: 353 KEERSRKLIAVGHSLAQSFAARFLGRTASVLVEQPVDISEHLFSQVDQDLSGDAMNASGE 412
Query: 434 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
G T YV+V P+ ++ G A VK+T +G + G +I
Sbjct: 413 LFEGLTDNYVRVYFPAQDSLRGQLADVKVTELGGTGLKGRII 454
>gi|89894341|ref|YP_517828.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfitobacterium hafniense Y51]
gi|423073927|ref|ZP_17062662.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
hafniense DP7]
gi|123091791|sp|Q24X58.1|MIAB_DESHY RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|89333789|dbj|BAE83384.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361855203|gb|EHL07192.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfitobacterium
hafniense DP7]
Length = 447
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/438 (28%), Positives = 214/438 (48%), Gaps = 41/438 (9%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC ++ D++ + S GY + E+AD+ ++NT +SA + ++ K K
Sbjct: 15 YGCQMSERDADTLTEISSQKGYVRSQELEQADLIIVNTCCVRESAENKILGKIGELKHLK 74
Query: 120 ------PLVVAGCVPQGSRDLKELEG--------VSIVGVQQIDRVVEVVEETLKGHEVR 165
+ ++GC+ Q L+ L + + R++E EE K EV
Sbjct: 75 EANPQLKIAISGCMVQQPGALERLRKRAPHVDIWAGTHNIHEFQRLLEEAEEKGKVAEVW 134
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
R+ ++ L + K + I+ GC CTYC H RG S E ++ +R
Sbjct: 135 EKPRETQESVLLAA--KGKLKAYVNISYGCNNFCTYCIVPHVRGRERSRQPEEILAEIRA 192
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G +EV L ++ +YG+D+ + LL + + DG +R ++P + +
Sbjct: 193 LVETGCREVTLLGQNVNSYGQDLDRAYDFADLLKDVDS---IDGLWRVRFMTSHPKDLSD 249
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L E H C + +H+P Q+GSD +L MNR+YT + + + + ++P + + T
Sbjct: 250 KLIETIAAGTHLCEH--IHLPFQAGSDEILKGMNRKYTREYYLSRIAQIKVIIPQVSLTT 307
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
DII GFPGET+EDF QT+ LI++ ++ Q + R GTPAA+M +++P + K+R ++
Sbjct: 308 DIIVGFPGETEEDFEQTLELIRQVRYSQAFTFMYSKRSGTPAAQMAEQIPLDIKKRRLQQ 367
Query: 403 LTSVFEAFTPYLGMEGRVERIWIT-EIAADG------IHLVGHTKGYVQVLVPSTGNMLG 455
L +V A + + R E I T E+ +G L G T+GY V+ P ++G
Sbjct: 368 LITVQNAQS----LAWRQEMIGKTCEVLVEGPSKSNPDRLTGRTRGYELVVFPGEAQLIG 423
Query: 456 TSALVKITSVGRWSVFGE 473
T V I W++FGE
Sbjct: 424 TLVQVLIQDANSWTLFGE 441
>gi|302389477|ref|YP_003825298.1| MiaB family RNA modification protein [Thermosediminibacter oceani
DSM 16646]
gi|302200105|gb|ADL07675.1| RNA modification enzyme, MiaB family [Thermosediminibacter oceani
DSM 16646]
Length = 441
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 211/437 (48%), Gaps = 34/437 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KSAKK 119
T GC NQ +S+ MA GY L + AD+++INT + + K K+A++
Sbjct: 15 TLGCKVNQYESDAMAELFKNRGYELVGFDDVADVYVINTCTVTNEGARKSRQIIRKAARR 74
Query: 120 ----PLVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ V GC Q + ++ + GV +V G + ++V++VE+ K +E K +
Sbjct: 75 NPEATIAVVGCYAQLEAEEVSRIPGVDVVVGTKDRHKIVDLVEQAGKNNE------KIIE 128
Query: 174 ALDLPKVR----------RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
D+ + R R + L I GC C+YC + RG + S T+ES++
Sbjct: 129 VEDIMQTRNFEEIAFRGHRQRTRAFLKIQEGCNMFCSYCIIPYVRGPVRSRTLESIIREA 188
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ DG KE+ L+ G YG D P L + I +G +R+ + +
Sbjct: 189 ENLAGDGFKEIVLTGIHLGLYGADFKGG-PTLYDVIERLSRIEGIKRIRLSSIEAMELSD 247
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L + L + C + H+P+QSGSD +L MNR YT ++F + + +++P + I T
Sbjct: 248 DLIKKLASLDNFCHH--FHIPLQSGSDRILKLMNRRYTTAEFEERLRFIRDIMPDVGITT 305
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
D+I GFPGETDEDF T I+ F ++H+ +F PR GTPAA M ++P V + RSRE
Sbjct: 306 DVIVGFPGETDEDFEITRKFIERAAFSRLHVFKFSPRKGTPAAEMPDQIPGPVKESRSRE 365
Query: 403 LTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L + G+ G+V + E G++ G T Y++V V S ++ V
Sbjct: 366 LIRLSRRLERDFRDGLTGKVLDVLFEERDNRGLYH-GLTDNYIRVAVWSDQDLHNRLLPV 424
Query: 461 KITSVGRWSVFGEVIKI 477
++ +FGE+ K
Sbjct: 425 RLIENRDEYIFGEIKKF 441
>gi|138896073|ref|YP_001126526.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
gi|196248967|ref|ZP_03147667.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
gi|134267586|gb|ABO67781.1| Fe-S oxidoreductase [Geobacillus thermodenitrificans NG80-2]
gi|196211843|gb|EDY06602.1| RNA modification enzyme, MiaB family [Geobacillus sp. G11MC16]
Length = 449
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/457 (28%), Positives = 224/457 (49%), Gaps = 33/457 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKEFESHADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
V V GC Q S ++ + GV IV G Q ++++ VE+ + +
Sbjct: 63 RAVRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRHKILDYVEQFQRERQPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
R ++A G KE+ L+ TG YG D+ N LL + ++P G +RI +
Sbjct: 182 RQLVAAGYKEIVLTGIHTGGYGTDLKDYNFAALLRDLDEQVP--GLKRIRISSIEASQLT 239
Query: 283 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ +VLR + LH+P+QSGS+ VL M R+YT+ F + L E+ P + +
Sbjct: 240 D---EVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLARLREVFPELAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T N I+E +F ++H+ + R GTPAARM ++ R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIREQRFSELHVFPYSKRTGTPAARMPDQIDEETKHDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD--GIHLVGHTKGYVQVLVPSTGNMLGT 456
R L ++ + EG+V + E + G++ +G+T Y++V P+T M+G
Sbjct: 357 RRLIALSDQLAKEYASRFEGQVLEVIPEEHDKEEPGMY-IGYTDNYLKVRFPATEEMVGE 415
Query: 457 SALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKIT G GE +++ V D+ + ++SS
Sbjct: 416 LVKVKITKAGYPYNEGEFVRV---VSDEAVRSVKLSS 449
>gi|427723965|ref|YP_007071242.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
gi|427355685|gb|AFY38408.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Leptolyngbya sp. PCC
7376]
Length = 451
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 215/448 (47%), Gaps = 38/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
++ TFGC N++DSE MAG L GY ++ EAD+ L NT + D K S
Sbjct: 8 HITTFGCQMNKADSERMAGILEGMGYLFAEDPNEADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 118 -----KKP---LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
KP L+VAGCV Q G L+ + V I+G Q +R+ E++E+ G ++
Sbjct: 68 AKRKHSKPDLTLIVAGCVAQQEGESLLRRVPEVDLIMGPQHANRLQELLEQVDSGSQIVA 127
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 128 TEPIHI-VEDITKPRRDSSVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIYAEME 185
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILLNAIVAELPPDGSTMLRIGM 275
+ G KEV L ++ AYGRD+ NL LL V ++P G +R
Sbjct: 186 ELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYNLTDLL-YFVHDVP--GIERIRFAT 242
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
++P + E L + L P + H+P QSG + VL AM R YT +R ++D + +
Sbjct: 243 SHPRYFTERLIKACHEL--PKICEHFHIPFQSGDNDVLKAMRRGYTHEKYRRIIDNVRKY 300
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I FPGET+E F T+ L+++ F Q++ + + PRPGTPAA + S
Sbjct: 301 MPDASISADAIVAFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAAVWEDQLSEE 360
Query: 396 VKK-RSRELTSVF--EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTG 451
VK R + L + +A GRVE + + + + ++G T G
Sbjct: 361 VKSDRLQRLNRLVNQKAAERSERYAGRVEAVLVEGQNPKNPNQVMGRTSGNRLTFFEGDI 420
Query: 452 NML-GTSALVKITSVGRWSVFGEVIKIL 478
N L GT V+IT V +S+ GE I+ L
Sbjct: 421 NELKGTIVSVRITEVRPFSLTGEPIEAL 448
>gi|448448754|ref|ZP_21591339.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
gi|445814228|gb|EMA64195.1| MiaB-like tRNA modifying enzyme [Halorubrum litoreum JCM 13561]
Length = 441
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/436 (31%), Positives = 215/436 (49%), Gaps = 38/436 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 171
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V EA+ +G E + + E D + Y Q++V + G +G V+
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVE 402
Query: 462 ITSVGRWSVFGEVIKI 477
+T FG+ ++I
Sbjct: 403 VTGHNTVYAFGDPVEI 418
>gi|418324135|ref|ZP_12935386.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
gi|365227632|gb|EHM68824.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus
pettenkoferi VCU012]
Length = 529
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 213/439 (48%), Gaps = 32/439 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +KT+GC N D+E MAG LSA GY T++ AD+ LINT ++ + + I
Sbjct: 84 TFMIKTYGCQMNAHDTEVMAGILSALGYQPTEDINTADVILINTCAIRENAENKVFSEIG 143
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K K+ L V GC+ Q ++ LK + V ++ G I R+ E++EE K
Sbjct: 144 NLKHLKRERPDVLLGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHRLPEILEEAYLSK 203
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 204 AMVVEVWSKEGDVIENLPKVREGNIKAWVNIMYGCDKFCTYCIVPFTRGKERSRKPEDII 263
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + +G +EV L ++ +YG+DI L L ++A++ +R ++P
Sbjct: 264 QEVRELAREGYQEVTLLGQNVNSYGKDID-GLDYGLGDLLADISKIDIPRVRFTTSHPWD 322
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + E+ + + + +H+PVQSG++AVL M R+YT + +VD + +P +
Sbjct: 323 FTDRMIEV--IAQGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLNLVDRIKAQIPDVA 380
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E F + + R GTPAARMK VP V K R
Sbjct: 381 LTTDIIVGYPNETEEQFEETLSLYDEVGFEHAYTYLYSERDGTPAARMKDDVPKEVKKDR 440
Query: 400 SRELTSVF-----EAFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNM 453
+ L EA PY EG V + + D L G+T+ V + +
Sbjct: 441 LQRLNRKVAAYSGEAMKPY---EGEVVSVLCEGTSKKDDEVLAGYTEKNKLVNFRAPKSA 497
Query: 454 LGTSALVKITSVGRWSVFG 472
+G V+I ++S+ G
Sbjct: 498 IGKIVDVRIDEAHQFSLNG 516
>gi|381210061|ref|ZP_09917132.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lentibacillus
sp. Grbi]
Length = 526
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 135/436 (30%), Positives = 218/436 (50%), Gaps = 32/436 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA-----K 113
++T+GC N+ D+E MAG L+ GY T+++++ADI L+NT ++A + + K
Sbjct: 87 IRTYGCQMNEHDTEVMAGILNEMGYESTNDTKDADIILLNTCAIRENAENKVFGEIGHLK 146
Query: 114 CKSAKKP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
+KP L V GC+ Q +R +K+ V ++ G I R+ +V+E + G E
Sbjct: 147 ALKREKPDLILGVCGCMSQEEKVVNRIMKKHPQVDLIFGTHNIHRLPHLVKEAMFGKEKV 206
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ +LPK R+ K + I GC CTYC RG S E ++ V
Sbjct: 207 VEVWSKEGDIIENLPKARKGKVKAWVNIMYGCDKFCTYCIVPMTRGKERSRLPEDIIQEV 266
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + A G KE+ L ++ AYG+D + L ++ +L +R ++P +
Sbjct: 267 RHLTAQGYKEITLLGQNVNAYGKDFE-DSDYGLGDLMDDLHKIDIPRIRFTTSHPRDFDD 325
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L E+ + + + +H+PVQSGS VL MNR YT ++ +V + E +P + T
Sbjct: 326 RLIEV--LAKGGNLLDHIHLPVQSGSSEVLKKMNRRYTREEYLELVRKIREAMPNATLTT 383
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII GFP ET+E F +T++L++E F + PR GTPAAR + VP V K+R
Sbjct: 384 DIIVGFPNETEEQFEETMSLVEEVGFESAFTFIYSPREGTPAARKQDDVPEEVKKQRLYR 443
Query: 403 LTSVF-----EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
L + E+ Y + +V ++ + E D L G+T+ V + +++G
Sbjct: 444 LNELVNKQSAESMQHY---KDKVVKVLVEGESKKDPDVLAGYTERNKLVNFRAPKSLIGK 500
Query: 457 SALVKITSVGRWSVFG 472
VKIT WS+ G
Sbjct: 501 IVDVKITEARTWSLNG 516
>gi|312111583|ref|YP_003989899.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|336235965|ref|YP_004588581.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|423720511|ref|ZP_17694693.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
gi|311216684|gb|ADP75288.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|335362820|gb|AEH48500.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
gi|383366566|gb|EID43856.1| RNA modification protein, miaB family [Geobacillus
thermoglucosidans TNO-09.020]
Length = 523
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 129/439 (29%), Positives = 216/439 (49%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
Y++T+GC N+ D+E MAG GY TD E+A++ L+NT ++A + + I
Sbjct: 82 FYIRTYGCQMNEHDTEVMAGIFMELGYEPTDRPEDANVILLNTCAIRENAENKVFGEIGH 141
Query: 114 CKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K K+ L V GC+ Q ++ LK+ + V ++ G I R+ ++ E E
Sbjct: 142 LKQLKQDNPDLLLGVCGCMSQEESVVNKILKQYQYVDMIFGTHNIHRLPHILHEAYMSKE 201
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPK R+ + I GC CTYC + RG S E ++
Sbjct: 202 MVVEVWSKEGDVIENLPKARKGNIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 261
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KEV L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 262 EVRHLAAQGYKEVTLLGQNVNAYGKDF-TDMKYGLGDLMDELRKIDIARIRFTTSHPRDF 320
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+YT ++ +V + +P + +
Sbjct: 321 DDRLIEV--LAKRGNLVEHIHLPVQSGSTEILKLMGRKYTREEYLELVRKIKAAIPDVAL 378
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII GFP ET+E F +T++L +E +F + + PR GTPAA+M VP V K+R
Sbjct: 379 TTDIIVGFPNETEEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMVDNVPMEVKKERL 438
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L ++ + EG+V + + E + L G+T+ V + +G
Sbjct: 439 HRLNALVNEISARKMKEYEGKVVEVLVEGESKNNPDVLAGYTRKNKLVNFIGPKSAIGKL 498
Query: 458 ALVKITSVGRWSVFGEVIK 476
V+IT W++ GE+++
Sbjct: 499 VKVRITEAKTWTLNGEMVE 517
>gi|392961815|ref|ZP_10327269.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|421055727|ref|ZP_15518689.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|421059013|ref|ZP_15521645.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
gi|421067117|ref|ZP_15528631.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|421072487|ref|ZP_15533596.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392439492|gb|EIW17203.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B4]
gi|392445687|gb|EIW22998.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A11]
gi|392450855|gb|EIW27864.1| RNA modification enzyme, MiaB family [Pelosinus fermentans A12]
gi|392453382|gb|EIW30263.1| RNA modification enzyme, MiaB family [Pelosinus fermentans DSM
17108]
gi|392459694|gb|EIW36079.1| RNA modification enzyme, MiaB family [Pelosinus fermentans B3]
Length = 435
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/448 (30%), Positives = 214/448 (47%), Gaps = 50/448 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK----- 115
+ T GC NQ ++E M G GY + + AD+++INT S K +
Sbjct: 4 VAFTTLGCKVNQFETEIMEGLFKQRGYEMVPFDQVADVYVINTCSVTHLGEKKSRQIIRR 63
Query: 116 ----SAKKPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEET--------LKG 161
+ K + VAGC Q S ++++ +EGV IVG Q R+V++VE+ +
Sbjct: 64 AIRLNPKAIVAVAGCYAQVSPQEIEAIEGVKVIVGTQDRQRIVDLVEQAAHCMSPVNIVT 123
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ ++ + + +P D P R L I GC CTYC +ARG L S + S++
Sbjct: 124 NIMKAEYFEDIPLFDAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRPLSSIIQ 179
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+IA G KE+ L+ GAYGRD+ + L + + A L G LR+G I
Sbjct: 180 ETEKLIAAGFKEIVLTGIHLGAYGRDMEDEIT-LADVVRAILKIQGLVRLRLGSLESIEI 238
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L IA + + + S LH+P+Q+G VL AMNR YTL +++ ++ + V + I
Sbjct: 239 SDEL--IALMKQDDRLCSHLHLPLQAGDATVLKAMNRHYTLGEYQQLIANIRNKVEDIAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA------------RMK 389
+TDII GFPGET E FN + +++ F ++HI + R GTPAA R
Sbjct: 297 STDIIVGFPGETPEMFNNALAFVEKMNFSRMHIFPYSRRSGTPAAEYSGQIPEEEKRRRV 356
Query: 390 KVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
++ + +K++ E F FT ME + +E DG+ T Y++V
Sbjct: 357 QIMQELAEKKADEFLQSFLNRQFTVLFEMESQK-----SENIIDGL-----TGNYIRVYT 406
Query: 448 PSTGNMLGTSALVKITSVGRWSVFGEVI 475
NM G S V + R V+G+++
Sbjct: 407 SGNQNMQGKSFQVILEKPYRDGVWGKIV 434
>gi|284048550|ref|YP_003398889.1| MiaB family RNA modification protein [Acidaminococcus fermentans
DSM 20731]
gi|283952771|gb|ADB47574.1| RNA modification enzyme, MiaB family [Acidaminococcus fermentans
DSM 20731]
Length = 442
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 123/368 (33%), Positives = 187/368 (50%), Gaps = 37/368 (10%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAK--- 118
+GC N+SDSE+ AGQLS GY T++ +AD+ LINT +SA ++ K K
Sbjct: 10 YGCQMNESDSEHYAGQLSDLGYHYTEDYHDADVILINTCCVRESAEKKILGKIGEMKQVK 69
Query: 119 -----KPLVVAGCVPQ--GSRDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLHRK 170
K L V GC+ Q G LK+ V + +G ++ ++++ L H+ + RK
Sbjct: 70 REDPSKVLCVTGCMAQKDGEDFLKKYPQVDLLIGTAHVNNFSAILQDYL--HQTQ---RK 124
Query: 171 KLPALDL---PK------VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
DL P+ VR++ + +PI GC CTYC + RG S + E++
Sbjct: 125 SGMFNDLTVMPREFEGHFVRKSSYAAWVPIMYGCNNFCTYCIVPYVRGRERSRSAEAICE 184
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNPP 279
+R + G +E L ++ +YG+D G LL + A +P G +R ++P
Sbjct: 185 EIRKAVDQGYREFTLLGQNVNSYGKDRGDKDAFAALLRQVDA-IP--GVERVRYMTSHPR 241
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ E L +H C + H+PVQSGS ++ AMNR YT + +VDT+ + VP
Sbjct: 242 DMSEELIRTVAESKHVCKH--FHIPVQSGSTRIMQAMNRGYTRESYLHLVDTIRKYVPEA 299
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
+ TDII GFPGET+EDF +T++L + + + R GTPAA M+ +VP AV K
Sbjct: 300 VLTTDIIVGFPGETEEDFQETLSLFDRVSYDAAYTFIYSKRSGTPAAAMEAQVPEAVKKD 359
Query: 399 RSRELTSV 406
R L +
Sbjct: 360 RLNRLMEL 367
>gi|295706646|ref|YP_003599721.1| 30S ribosomal protein S12 methylthiotransferase [Bacillus
megaterium DSM 319]
gi|294804305|gb|ADF41371.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium
DSM 319]
Length = 452
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 222/450 (49%), Gaps = 38/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY + + AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV IV G Q ++++ +E+ K +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLDYIEQFKKERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 GNIMKTRIYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVAQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL LL + +++ G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAQLLRDLESQVK--GLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDQSEMVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ I +D+I GFPGET+E+F +T N IKE+ F ++H+ + R GTPAARM ++ V
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIW----ITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R L + EG V + E G++ VG+T Y++V+ ++
Sbjct: 354 QRVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLY-VGYTDNYLKVVFKASE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQV 481
M+G VKI+ G GE +++L++V
Sbjct: 413 EMVGKLVKVKISKAGYPYNEGEFVRVLDEV 442
>gi|311069144|ref|YP_003974067.1| YqeV protein [Bacillus atrophaeus 1942]
gi|419820208|ref|ZP_14343820.1| YqeV protein [Bacillus atrophaeus C89]
gi|310869661|gb|ADP33136.1| YqeV [Bacillus atrophaeus 1942]
gi|388475620|gb|EIM12331.1| YqeV protein [Bacillus atrophaeus C89]
Length = 451
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 226/458 (49%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERKEFEQAADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q ++++ +E+ + +
Sbjct: 63 RAIRHNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIEQYRQERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + A + DG +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDARV--DGLKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T + IKE +F ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYDFIKENRFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
+L ++ + EG V I E + VG+T Y++V+ T +++G
Sbjct: 357 HQLIALSDQLAKEYASDYEGEVLEIIPEEAFKETNESNLFVGYTDNYMKVVFKGTEDLIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ ++++ A + R+SS
Sbjct: 417 KLVKVKIEKAGYPYNEGQFVRV---IEEETADHIRLSS 451
>gi|227824689|ref|ZP_03989521.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|352685015|ref|YP_004897000.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
gi|226905188|gb|EEH91106.1| RNA modification enzyme [Acidaminococcus sp. D21]
gi|350279670|gb|AEQ22860.1| RNA modification enzyme [Acidaminococcus intestini RyC-MR95]
Length = 435
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 154/447 (34%), Positives = 209/447 (46%), Gaps = 50/447 (11%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
+I T GC NQSD+ M GY + E +DI LINT Q +I
Sbjct: 4 SISFYTLGCKVNQSDTASMEKLFREAGYEIVPFGEASDICLINTCVVTNMGQGKSRRMIR 63
Query: 113 KC-KSAKKPL-VVAGCVPQGS-RDLKELEGVSI-VGVQQIDRVVEVVEETLKGHEVRLLH 168
+ K KPL VV GC PQ + ++ LEGV + VG + R+VE+VEE RL
Sbjct: 64 RTIKRDPKPLIVVTGCYPQTAPEEVAALEGVDLLVGNRDRARIVELVEE-------RLGE 116
Query: 169 RKKLPA---LDLP----------KVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
R P LDLP V ++ L I GC C+YC +ARGHL S
Sbjct: 117 RDAAPVNDVLDLPVGSEFEDLAASVDDSRDRAFLKIQEGCDQYCSYCIIPYARGHLRSRP 176
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM 275
+ S+ V + +G KEV L G YG++ N L +A+ A L LR+G
Sbjct: 177 LSSIRREVEHLTEEGYKEVVLLGIHLGCYGKETA-NGERLSDAVSAALSVPALCRLRLGS 235
Query: 276 TNPPFILEHLKEIAEVLR----HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
LE ++ E+LR P LH+P+QSG D +L AMNR Y + F+ ++D
Sbjct: 236 ------LESVEVQPELLRLMQEDPRFCCHLHLPLQSGCDKILKAMNRPYDTARFKELIDR 289
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 391
+ VP + I TDII GFPGET+ DF QT+ + F ++HI + R GTPAA K
Sbjct: 290 IRAAVPDVAITTDIIVGFPGETEADFAQTLTFAEACGFAKIHIFPYSKRKGTPAAERKDQ 349
Query: 392 PSAVVKK-RSRELTSV----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL 446
S K+ R L +V E F L GR + +I G+ G T YV+V
Sbjct: 350 LSNKEKEDRVHRLEAVDRKGNEIFRKTLI--GRQYPVLWEQIGRKGL-WEGLTPNYVRVY 406
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGE 473
+ S ++ GT V +T + V E
Sbjct: 407 LKSEEDLTGTLTTVAVTGLFDDGVLAE 433
>gi|429759389|ref|ZP_19291888.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
gi|429179665|gb|EKY20904.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Veillonella atypica KON]
Length = 426
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/431 (30%), Positives = 211/431 (48%), Gaps = 32/431 (7%)
Query: 71 NQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------IAKCKSAKKP 120
N +DSE ++ QL GY TD+ E AD+ L+NT + +T + + K K
Sbjct: 2 NTADSERLSHQLEIVGYIPTDDVESADLILLNTCAVRETAETKVFGRIGELKRLKQKNKN 61
Query: 121 LVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL---LHRKKL 172
L++A GC+ Q ++ K + IV G I + E++ E + H+ ++ + L
Sbjct: 62 LIIAITGCMAQKNQAEMFKRAPHIDIVLGTHNIQHINEMIAEVQRTHKHQINVDMDNTVL 121
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P L F +PI GC CTYC H RG S VE++V V + A G K
Sbjct: 122 PELQAKP--NGTFFAWVPIMNGCNKFCTYCIVPHVRGREISRPVEAIVKEVTELGAKGFK 179
Query: 233 EVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
E+ L ++ +YG D G + L++A+ +P G +R ++P + + + I
Sbjct: 180 EITLLGQNVNSYGLDFKDGTDFGTLVDAL-DHIP--GIERIRYMTSHPQDMTKSM--IDA 234
Query: 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ R + + LH+P+QSGSD +L MNR YT+ ++ ++ E + + + TDII GFP
Sbjct: 235 LGRSSNIVTHLHLPIQSGSDRILKKMNRHYTVEHYKELLSYCREKIKNVVVTTDIIVGFP 294
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSVFEA 409
GET+EDF QT+ L+K+ ++ + + R GTPAA M ++VP V + R ++L +
Sbjct: 295 GETEEDFEQTLQLLKDVRYDMAYTFIYSKRSGTPAATMDEQVPEEVKRVRLQQLMDIQNE 354
Query: 410 FTPYLG--MEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM-LGTSALVKITSV 465
+ L MEG+V I + A D G T G VL P + +G + I
Sbjct: 355 ISLELNKTMEGKVFDIIVEGPSAKDETMWFGRTSGNKMVLFPKDDELTIGDTVPAYIDKA 414
Query: 466 GRWSVFGEVIK 476
W +G + K
Sbjct: 415 QTWVCYGTIQK 425
>gi|455652050|gb|EMF30731.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
gancidicus BKS 13-15]
Length = 508
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 193/389 (49%), Gaps = 25/389 (6%)
Query: 45 LSKTGSLSPKIP--GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWL 100
++ + SP + T T ++T+GC N DSE +AG L GY A + +AD+ +
Sbjct: 1 MTSSSDRSPAVDVLSTRTYEIRTYGCQMNVHDSERLAGLLEDAGYVRAPQGSDGDADVVV 60
Query: 101 INTQSAMDTLIAKC---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GV 145
NT + + K K A +P + V GC+ Q RD +K V +V G
Sbjct: 61 FNTCAVRENADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGT 120
Query: 146 QQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCK 203
I ++ ++E E ++ + L A LP R + + + I+VGC CT+C
Sbjct: 121 HNIGKLPVLLERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCI 180
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263
RG ++ + ++A+GV E+ L ++ AYG DIG + + A
Sbjct: 181 VPALRGKEKDRRPGDILAEIEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACG 239
Query: 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS 323
DG +R +P + + IA + P V LH+P+QSGSDA+L AM R Y
Sbjct: 240 TIDGLERVRFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDAILKAMRRSYRQE 297
Query: 324 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383
F +++ + +P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGT
Sbjct: 298 RFLGIIEKVRAAIPHAAISTDIIVGFPGETEEDFQQTLHVVREARFAQAFTFQYSKRPGT 357
Query: 384 PAARMK-KVPSAVVKKRSRELTSVFEAFT 411
PAA M ++P VV++R L ++ E +
Sbjct: 358 PAAEMDGQIPKQVVQERYERLVALQEEIS 386
>gi|296330914|ref|ZP_06873389.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305674432|ref|YP_003866104.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|350266015|ref|YP_004877322.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|296151919|gb|EFG92793.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305412676|gb|ADM37795.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
subtilis subsp. spizizenii str. W23]
gi|349598902|gb|AEP86690.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 509
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 217/438 (49%), Gaps = 26/438 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS VL M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSEVLKLMARKYDRERYMELVRKIKAAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V +G
Sbjct: 425 QRLNALVNEISAKKMKEYEGKVVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKEAIGKI 484
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI WS+ GE++
Sbjct: 485 VRVKIQQAKTWSLDGEMV 502
>gi|188582640|ref|YP_001926085.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium populi BJ001]
gi|229890615|sp|B1ZJR5.1|MIAB_METPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|179346138|gb|ACB81550.1| RNA modification enzyme, MiaB family [Methylobacterium populi
BJ001]
Length = 446
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/444 (30%), Positives = 209/444 (47%), Gaps = 37/444 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
Y+K++GC N D+ MA L+A GY+ T++ EEAD+ ++NT + K S
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATESVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 117 -----------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 163 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E R++ + P D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPVEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHAGNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRTARP 298
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 396
+ +++D I GFPGE+D DF +T+ L+ E F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGESDADFAETMRLVAEIGFAAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 397 KKRSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + + AF G V I + + + G T V + +
Sbjct: 359 TERLAALQQLLDQQRHAFN--AAAVGTVAEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 416
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+GT V+IT G S+FGEV++
Sbjct: 417 TIGTLVPVRITRAGSNSLFGEVLE 440
>gi|381162577|ref|ZP_09871807.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora azurea NA-128]
gi|379254482|gb|EHY88408.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora azurea NA-128]
Length = 496
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/370 (34%), Positives = 191/370 (51%), Gaps = 27/370 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL--- 110
T T ++TFGC N DSE +AGQL GYA + E+ D+ ++NT ++A + L
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYAHAADGEDPDVVVLNTCAVRENADNKLYGH 61
Query: 111 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+ ++AK KP + V GC+ Q R ++ V +V G I + ++E
Sbjct: 62 LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVQRAPWVDVVFGTHNISSLPVLLERARHNA 121
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI--LLNAIVAELPPDGSTMLRIGMTNP 278
V ++A+GV EV L ++ +YG + G LL A + DG +R +P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDRYAFGKLLRACGS---VDGLERVRFTSPHP 238
Query: 279 P-FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
F + + +AE P V LH+P+QSGSD VL AM R Y + F +++D + E +P
Sbjct: 239 AAFTDDVIDAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLSILDRVREAMP 295
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
I TDII GFPGET+EDF QT+ ++++ +F Q+ PRPGTPAA M+ +VP AVV
Sbjct: 296 DAAITTDIIVGFPGETEEDFEQTLEVVRQARFSSAFTFQYSPRPGTPAAEMEDQVPKAVV 355
Query: 397 KKRSRELTSV 406
++R L +
Sbjct: 356 QERYDRLVEL 365
>gi|418529848|ref|ZP_13095775.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni ATCC 11996]
gi|371452904|gb|EHN65929.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni ATCC 11996]
Length = 442
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 224/446 (50%), Gaps = 36/446 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
++ +++KTFGC N+ DS+ MA L +A GY T N +EAD+ L NT Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFS 61
Query: 110 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + + K+ V V GCV +G+ +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRIRHLKEKGVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQRAAKAK 121
Query: 164 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 277
V + GVKE+ L ++ AY +G + + LL VAE+P G +R ++
Sbjct: 182 EVAGLAEQGVKEITLLGQNVNAYLGKMGDSSEMADFALLLEYVAEIP--GIERIRYTTSH 239
Query: 278 P----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ + L
Sbjct: 240 PNEFTPRLIEAYAKIPQLVSH------LHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLR 293
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 392
+ P + +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P
Sbjct: 294 AIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTP 353
Query: 393 SAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPS 449
V +R +EL +V + E G V+R+ + ++ DG L+G T V P
Sbjct: 354 HEVKLRRLQELQAVINTNIKEISEERVGTVQRLLVEGVSKRDGSELMGRTYCNRVVNFPG 413
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
++G VKIT +++ GEV+
Sbjct: 414 NERLIGQMVDVKITEAKAYTLRGEVL 439
>gi|264680203|ref|YP_003280113.1| tRNA-i(6)A37 thiotransferase protein MiaB [Comamonas testosteroni
CNB-2]
gi|299533989|ref|ZP_07047341.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni S44]
gi|262210719|gb|ACY34817.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Comamonas testosteroni
CNB-2]
gi|298717898|gb|EFI58903.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Comamonas
testosteroni S44]
Length = 442
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 224/446 (50%), Gaps = 36/446 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
++ +++KTFGC N+ DS+ MA L +A GY T N +EAD+ L NT Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTQNVDEADLILFNTCSVREKAQEKVFS 61
Query: 110 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + + K+ V V GCV +G+ +K V +V G Q + R+ E++ + +
Sbjct: 62 DLGRIRHLKEKGVLIGVGGCVASQEGAEIIKRAPFVDVVFGPQTLHRLPELLNQRAAKAK 121
Query: 164 VRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
++ + ++ D LP R + I GC C+YC + RG S E ++
Sbjct: 122 PQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLV 181
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTN 277
V + GVKE+ L ++ AY +G + + LL VAE+P G +R ++
Sbjct: 182 EVAGLAEQGVKEITLLGQNVNAYLGKMGDSSEMADFALLLEYVAEIP--GIERIRYTTSH 239
Query: 278 P----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ + L
Sbjct: 240 PNEFTPRLIEAYAKIPQLVSH------LHLPVQHGSDKILMAMKRGYTAMEYKSTIRKLR 293
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 392
+ P + +++D I GFPGET+EDF + + LI + +F F PRPGTPAA + P
Sbjct: 294 AIRPDLAMSSDFIVGFPGETEEDFQKMMKLIHDVRFDNSFSFIFSPRPGTPAANLHDDTP 353
Query: 393 SAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPS 449
V +R +EL +V + E G V+R+ + ++ DG L+G T V P
Sbjct: 354 HEVKLRRLQELQAVINTNIKEISEERVGTVQRLLVEGVSKRDGSELMGRTYCNRVVNFPG 413
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
++G VKIT +++ GEV+
Sbjct: 414 NERLIGQMVDVKITEAKAYTLRGEVL 439
>gi|399055630|ref|ZP_10743325.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. CF112]
gi|398046839|gb|EJL39423.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. CF112]
Length = 504
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 216/441 (48%), Gaps = 34/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
+++T+GC N+ DSE +AG L GY TD E AD+ L NT ++A D + +
Sbjct: 66 HVRTYGCQMNEHDSETIAGILQQMGYTSTDEVEAADVILFNTCAIRENAEDKVFGELGHM 125
Query: 118 KK--------PLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 163
K+ L V GC+ Q ++ LK + V ++ G I R+ +++ + + E
Sbjct: 126 KRLKNNNPNLILGVCGCMSQEEKVVNKILKSYQQVDLIFGTHNIHRLPQLMRDAMFSKEM 185
Query: 164 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 186 VIEVWSKEGDIVENMPKLREGNTKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 245
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 246 VRDLARQGFKEIMLLGQNVNAYGKDFD-DIEYGFGDLLDEIRKIDIPRIRFTTSHPRDFD 304
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + +P + ++
Sbjct: 305 DHLIEV--LAKGGNLVEQIHLPVQSGSTEILKRMARKYTREHYLELVRKIKAAIPNVSLS 362
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFPGETDE F +T++L++E ++ + + PR GTPAA M+ VP V K R
Sbjct: 363 TDIIVGFPGETDEQFEETISLVEEVRYDSAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 422
Query: 402 ELTSVFEAFTPYLGME-GRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNML 454
L V +G+E + + + E+ +G L G T+ V + +++
Sbjct: 423 RLNEVL----ARIGLEQNKKLQDQVLEVLIEGESKNNPDVLAGRTRTNKLVHFTADKSLI 478
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G VKIT W++ GE++
Sbjct: 479 GEYVHVKITDAKTWTLHGELV 499
>gi|284163849|ref|YP_003402128.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
gi|284013504|gb|ADB59455.1| MiaB-like tRNA modifying enzyme [Haloterrigena turkmenica DSM 5511]
Length = 417
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 209/402 (51%), Gaps = 36/402 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ ++ + +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 118 KKP---LVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 SEETADLFITGCMALAQG----EEFRAADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPPIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L LL+ I A +G +R+GM NP + +E+A V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLSEICA---IEGDFRVRVGMANPKGVHGIREELAAV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGS+ VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENEELYDFLHAPVQSGSNDVLGDMRRQHQVDEYVEVVETFDDALDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA MK + V K+RS+E++
Sbjct: 288 TETDRDHAQSMALLRETRPEKINVTRFSKRPGTDAAEMKGLGGTVKKERSKEMSEVKREI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
V EA+ +G E R + + + E AD + Y QV+V
Sbjct: 348 VREAYADMVG-EVREDCLVVEEGTADSVKC--RDSAYRQVIV 386
>gi|15614935|ref|NP_243238.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
halodurans C-125]
gi|81786524|sp|Q9KAB7.1|MIAB_BACHD RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|10174992|dbj|BAB06091.1| BH2372 [Bacillus halodurans C-125]
Length = 538
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/438 (28%), Positives = 214/438 (48%), Gaps = 26/438 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------IA 112
++T+GC N DSE MAG L G+ TD + +AD+ LINT ++A + + +
Sbjct: 99 VRTYGCQMNIHDSENMAGMLKEMGFEATDETTDADVILINTCAIRENAENKVFGEIGNLK 158
Query: 113 KCKSAKKPLV--VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
+ K K LV V GC+ Q +R +++ + + ++ G I R+ ++ L G E
Sbjct: 159 QLKREKPELVIGVCGCMSQEEGVVNRIMQKHQHIDMIFGTHNIHRLPHLLRNALFGKEMI 218
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ + ++ ++P+ R K + I GC CTYC + RG S E ++ V
Sbjct: 219 IEVWSKEGDIVENMPRAREGKTQAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQEV 278
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + G KE+ L ++ AYG+D+ +L L ++ E+ +R ++P +
Sbjct: 279 RDLARQGYKEITLLGQNVNAYGKDLA-DLDYGLGDLMDEIRKIDIPRVRFTTSHPRDFDD 337
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HL E+ + + + +H+PVQ G+ +L M R+YT + + + +P T
Sbjct: 338 HLIEV--LAKGGNLVEHIHLPVQHGNSEILKLMARKYTREQYVELAQKIKRAIPNASFTT 395
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
D+I GFP ETDE F T++L++E +F + PR GTPAA+MK VP V ++R
Sbjct: 396 DLIVGFPNETDEQFEDTLSLVREIEFDSAFTYIYSPREGTPAAKMKDNVPMEVKRERLAR 455
Query: 403 LTSVFEAFTPYLGMEGR---VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L ++ + +E + VE + E D L G T+ V +++G
Sbjct: 456 LNALVNDISAQKNLEYQDKVVEVLVEGESKKDPNILAGRTRTNRLVNFKGPKSVIGDIVY 515
Query: 460 VKITSVGRWSVFGEVIKI 477
VK+T WS+ GE++++
Sbjct: 516 VKVTEAKTWSLNGEMVEM 533
>gi|90421992|ref|YP_530362.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Rhodopseudomonas palustris BisB18]
gi|123395291|sp|Q21C43.1|MIAB_RHOPB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|90104006|gb|ABD86043.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Rhodopseudomonas
palustris BisB18]
Length = 473
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 130/445 (29%), Positives = 224/445 (50%), Gaps = 35/445 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------ 110
+++K+FGC N D++ M L+ G+ T N++EAD+ ++NT + A + +
Sbjct: 7 LHIKSFGCQMNVYDAQRMVDALAPEGFVETANADEADLVILNTCHIREKASEKVYSELGR 66
Query: 111 --IAKCKSA----KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+AK ++A + + VAGCV Q G+ ++ V +V G Q + +++ E +G
Sbjct: 67 LRVAKDEAALQGRRMNIAVAGCVAQAEGAEIIRRQPAVDVVVGPQSYHHLPQLLAEAARG 126
Query: 162 H---EVRLLHRKKLPALDLPK---VRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
E K L P+ +R + + GC CT+C + RG S
Sbjct: 127 GRALETEFPVDDKFGFLPPPQPDAIRARGISAFVTVQEGCDKFCTFCVVPYTRGAEVSRP 186
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLR 272
V+ +V VR + +GV+E+ L ++ AY D P L A++ A++P G LR
Sbjct: 187 VDKIVEDVRRLADNGVREITLIGQNVNAYHGDGPDGRPWPLGALLHHLAKIP--GIVRLR 244
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
++P + + L + L P + F+H+PVQSGSDA+L+AMNR+++ D+R +VD
Sbjct: 245 YSTSHPRDVDQSLIDAHRDL--PALMPFVHLPVQSGSDAILAAMNRKHSADDYRRLVDRF 302
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-V 391
P + ++D I GFPGETDEDF T+ L+ + + + ++ PRPGTPAA +++ V
Sbjct: 303 RSANPAIAFSSDFIVGFPGETDEDFAATLALVTQIGYAGAYSFKYSPRPGTPAAELQETV 362
Query: 392 PSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVLVPS 449
+AV+ +R L + ++ G + A + +VG T V +
Sbjct: 363 SAAVMDERLVRLQELIDSQQAAFNAAVIGTTVEVLFERAARNPGQIVGRTAYLQPAHVMA 422
Query: 450 TGNMLGTSALVKITSVGRWSVFGEV 474
+++G V+I S+ R+S+ GE+
Sbjct: 423 APDIIGQVLPVRIDSLERYSLIGEL 447
>gi|402312108|ref|ZP_10831038.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
gi|400370769|gb|EJP23751.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae bacterium
ICM7]
Length = 475
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 186/361 (51%), Gaps = 27/361 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKKP 120
TFGC N DSE ++G L+ GY +N E+AD+ L NT ++A D L + KK
Sbjct: 41 TFGCQMNARDSEKLSGILTGIGYMEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 121 --------LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 165
+ + GC+ Q + ++++++ + G I ++ E++ E T K V
Sbjct: 101 KEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFEHLTTKKQVVN 160
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
++ ++ LP R F + I GC C+YC + RG S E ++ +R
Sbjct: 161 VMESAEMIVEKLPNKREFAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIRG 220
Query: 226 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ADGVKE+ L ++ +YGR + ++ LL+ I DG LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGRGLEEEISFATLLDRIAQ---IDGLERLRFMTPHPKDLSD 277
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ E+ + + C + LH+P+QSGS A+L MNR YT + +V + +P + + T
Sbjct: 278 EVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEGYLDLVRRIKAAIPDISLTT 335
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII GFPGET+EDF T++++KE ++ + R GTPAA+M+ ++ V+K R
Sbjct: 336 DIIVGFPGETEEDFLDTLDVVKEVRYDSAFTFIYSKRSGTPAAKMEDQIDPKVIKDRFDR 395
Query: 403 L 403
L
Sbjct: 396 L 396
>gi|294501299|ref|YP_003564999.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
B1551]
gi|384044855|ref|YP_005492872.1| methylthiotransferase yqeV [Bacillus megaterium WSH-002]
gi|294351236|gb|ADE71565.1| ribosomal protein S12 methylthiotransferase [Bacillus megaterium QM
B1551]
gi|345442546|gb|AEN87563.1| Putative methylthiotransferase yqeV [Bacillus megaterium WSH-002]
Length = 452
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 222/450 (49%), Gaps = 38/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY + + AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKGQGYERVEYEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ + GV IV G Q ++++ +E+ K +
Sbjct: 63 RAVRKNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRVKMLDYIEQFKKERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG + S + +V +
Sbjct: 123 GNIMKTRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVVAQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ NL LL + +++ G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNLAQLLRDLESQVK--GLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + V+RH LH+P+QSGS+ VL M R+YT+ F ++ L E +PG
Sbjct: 240 DEVIEVLDQSEMVVRH------LHIPLQSGSNTVLKRMRRKYTMEFFGERLNRLKEALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ I +D+I GFPGET+E+F +T N IKE+ F ++H+ + R GTPAARM ++ V
Sbjct: 294 LAITSDVIVGFPGETEEEFMETYNFIKEHGFSELHVFPYSKRTGTPAARMTDQIDEEVKN 353
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIW----ITEIAADGIHLVGHTKGYVQVLVPSTG 451
+R L + EG V + E G++ VG+T Y++V+ ++
Sbjct: 354 ERVHRLIELSNQLAKEYASTFEGEVLEVIPEEKYKEDPESGLY-VGYTDNYLKVVFKASE 412
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQV 481
M+G VKI+ G GE +++L++V
Sbjct: 413 EMVGKLVKVKISKAGYPYNEGEFVRVLDEV 442
>gi|433546738|ref|ZP_20503042.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
agri BAB-2500]
gi|432181958|gb|ELK39555.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
agri BAB-2500]
Length = 503
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/441 (28%), Positives = 216/441 (48%), Gaps = 34/441 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
+++T+GC N+ DSE +AG L GY TD E AD+ L NT ++A D + +
Sbjct: 65 HVRTYGCQMNEHDSETIAGILQQMGYTSTDEVEAADVILFNTCAIRENAEDKVFGELGHM 124
Query: 118 KK--------PLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 163
K+ L V GC+ Q ++ LK + V ++ G I R+ +++ + + E
Sbjct: 125 KRLKNNNPNLILGVCGCMSQEEKVVNKILKSYQQVDLIFGTHNIHRLPQLMRDAMFSKEM 184
Query: 164 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 185 VIEVWSKEGDIVENMPKLREGNTKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 244
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 245 VRDLARQGFKEIMLLGQNVNAYGKDFD-DIEYGFGDLLDEIRKIDIPRIRFTTSHPRDFD 303
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+HL E+ + + + +H+PVQSGS +L M R+YT + +V + +P + ++
Sbjct: 304 DHLIEV--LAKGGNLVEQIHLPVQSGSTEILKRMARKYTREHYLELVRKIKAAIPNVSLS 361
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFPGETDE F +T++L++E ++ + + PR GTPAA M+ VP V K R
Sbjct: 362 TDIIVGFPGETDEQFEETISLVEEVRYDSAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 421
Query: 402 ELTSVFEAFTPYLGME-GRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNML 454
L V +G+E + + + E+ +G L G T+ V + +++
Sbjct: 422 RLNEVL----ARIGLEQNKKLQDQVLEVLIEGESKNNPDVLAGRTRTNKLVHFTADKSLI 477
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G VKIT W++ GE++
Sbjct: 478 GEYVHVKITDAKTWTLHGELV 498
>gi|407978464|ref|ZP_11159295.1| 2-methylthioadenine synthetase [Bacillus sp. HYC-10]
gi|407415022|gb|EKF36638.1| 2-methylthioadenine synthetase [Bacillus sp. HYC-10]
Length = 452
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 218/450 (48%), Gaps = 37/450 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D +AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERKDYESKADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q +++ +EE + +
Sbjct: 63 RAIRHNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKLLGYIEEYRRERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVINQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDLKDYNFAKLLKELDERVA--GLKRIRISSIEASQIT 239
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F + L + +PG
Sbjct: 240 DEVIEVLDQSDKIVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALPG 293
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T N +K+++F ++H+ + R GTPAARM+ +V V
Sbjct: 294 LAVTSDVIVGFPGETEEEFMETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVKN 353
Query: 398 KRSRELTSVFEAFTPYL--GMEGRVERIWITEI--AADGIH--LVGHTKGYVQVLVPSTG 451
+R L ++ + EG V I E DG H VG+T Y++V+ T
Sbjct: 354 ERVHRLIALSDQLAKEYASAYEGDVLEIIPEESFKEQDGKHNLYVGYTDNYMKVVFEGTE 413
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQV 481
+M+G VKIT G G+ ++I + V
Sbjct: 414 DMIGRLVKVKITKAGYPYNEGQFVRISDDV 443
>gi|33862596|ref|NP_894156.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9313]
gi|81577894|sp|Q7V8L8.1|MIAB_PROMM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|33634512|emb|CAE20498.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 480
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 135/413 (32%), Positives = 206/413 (49%), Gaps = 41/413 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
+ +++TFGC N++DSE MAG L A GY EAD+ L NT + D K S
Sbjct: 30 SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89
Query: 117 --AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
A++ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 90 RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ DL RR+ + +NV GC CTYC RG S + E++
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 276
+ + A G +E+ L ++ AYGRD+ G L + + +G +R +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L E L P V H+P QSG + VL AM R YT+ +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAV 395
P I+TD+I FPGETD F T+NL++E F QV+ + + PRP TPAA ++P AV
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLLEEVGFDQVNTAAYSPRPNTPAATWSNQLPEAV 385
Query: 396 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIH------LVGHTK 440
+R ++L ++ E A G+VE ++ A+GI+ L+G T+
Sbjct: 386 KVERLKQLNALVERIALQRNSRYSGKVE-----QVLAEGINPKKPQQLMGRTR 433
>gi|359458947|ref|ZP_09247510.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
sp. CCMEE 5410]
Length = 454
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 140/448 (31%), Positives = 217/448 (48%), Gaps = 38/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ T+GC N++DSE MAG L GY ++N ++A++ L NT + D K S
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L I P V H+P QSG + VL AM+R YT +R ++D + ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+ F T+ L+++ +F ++ + + PRPGTPAA S V
Sbjct: 303 PDASISADAIVGFPGETEAQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAALWDNQLSEAV 362
Query: 397 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVP-ST 450
K +R L V R+E + + + D ++G T+G P
Sbjct: 363 KADRLQRLNRLVGVCAELRSQ-RYANRIEEVLVEDQNPKDPTQVMGRTRGNRLTFFPGKI 421
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIKIL 478
+ G VK+T V +S+ GE + L
Sbjct: 422 EELRGNIVSVKVTEVRSFSLTGEPLSAL 449
>gi|289423896|ref|ZP_06425689.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289155673|gb|EFD04345.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 442
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 214/437 (48%), Gaps = 43/437 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------QSAMDTLIAKCK 115
T GC NQ ++E M GY + E AD+++INT +S K K
Sbjct: 8 TLGCKVNQYETEAMLEMFEKKGYTNVGSEEYADVYVINTCTVTHMSDRKSRQYIRRVKKK 67
Query: 116 SAKKPLVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ K + V GC Q S ++ E+E V++V G +V+ +EE L KL
Sbjct: 68 NPKSIIAVVGCYSQVSPEEILEIEDVNLVMGTNDRRTIVDRIEE--------LDSNSKLS 119
Query: 174 ALD-LPKVRRNKFVEI----------LPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+D + KVR + +EI + I GC CTYC +ARG + S ++ +
Sbjct: 120 TVDDIMKVREFESIEISQNNGKTRAFIKIQDGCDRYCTYCIIPYARGRIRSRNIDEIREE 179
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ T+ +G KEV L+ +YG+D+ ++ IL + I A DG +R+ P
Sbjct: 180 IITLANNGYKEVVLTGIHVASYGKDLKEDIGIL-DVIKAVNDIDGIERIRLSSVEPVLFT 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ I E+ + + H+ +QSG+D+ L MNR YT ++++ VDTL + + + +
Sbjct: 239 DEF--IDEICKIDKLVPHFHLSLQSGTDSTLKRMNRRYTAAEYKRTVDTLRDRIKDVMLT 296
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TD+I GFPGET+EDF++T+ +KE K +H+ ++ PR GTPAA MK +V + RS
Sbjct: 297 TDVIVGFPGETNEDFSETLRFLKEIKLMHMHVFKYSPRKGTPAASMKDQVDPQAKQFRSD 356
Query: 402 ELTSV----FEAFT-PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
L ++ F+ T Y+ GR + E+ +G + G + Y+++ V S ++ G
Sbjct: 357 ALLNLSKKNFKENTEKYI---GRPLNVLFEEVDKEG-YYEGLSDNYIRIKVKSDKDIRGQ 412
Query: 457 SALVKITSVGRWSVFGE 473
KI + GE
Sbjct: 413 ILEAKIVDIRDDYCIGE 429
>gi|134300331|ref|YP_001113827.1| RNA modification protein [Desulfotomaculum reducens MI-1]
gi|134053031|gb|ABO51002.1| RNA modification enzyme, MiaB family [Desulfotomaculum reducens
MI-1]
Length = 436
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 207/434 (47%), Gaps = 29/434 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAM------DTLIAKCKSAK 118
T GC NQ +S +A GY + D + AD ++INT + I + S +
Sbjct: 9 TLGCKVNQYESSAIADLFRQAGYEIVDFEQHADAYVINTCTVTHMGDRKSRQIIRRASKQ 68
Query: 119 KP---LVVAGCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-----RLLH 168
P + V GC Q S ++ E+ GV +VG + R+V++VE +G ++
Sbjct: 69 NPAAVITVTGCYAQTSPGEVLEIPGVDLVVGTKDKSRIVQLVEAYSRGKGPVNAVDDIMQ 128
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
L +P + K L I GC C YC +ARG + S E+++ +I
Sbjct: 129 TDCFEELPVP-TEQGKTRAFLKIQEGCNSFCAYCIIPYARGPVRSRLPENVLSSAEELIQ 187
Query: 229 DGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
G +E+ L+ GAYG+D ++L L+ + A+LP G T LR+G P I L
Sbjct: 188 QGFQEIVLTGIHIGAYGQDFTGKDIDLGWLVERL-AKLP--GLTRLRLGSVEPHDINNAL 244
Query: 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345
I V HP V LH+P+QSG D +L+ M R Y F ++ + +++PG+ I +DI
Sbjct: 245 --IKAVSEHPNVCRHLHIPLQSGDDEILALMGRRYNTQQFTDLIHKINQIMPGIAITSDI 302
Query: 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELT 404
I GFPGET E F T+ ++ F +H+ ++ PR GTPAA M +V ++RS+ L
Sbjct: 303 IVGFPGETQEHFQNTLKTVERSGFAGIHVFKYSPRKGTPAAEMTDQVAPQDKEERSKSLI 362
Query: 405 SVFEAFTPYLGME--GRVERIWITE-IAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
+ + G+ ++ + + D L GHT Y++VL P + G V
Sbjct: 363 ELGNRLAHQFAQQQVGKELKVLVEQPYEKDPNLLEGHTDTYLKVLFPGDTGLKGQMVRVH 422
Query: 462 ITSVGRWSVFGEVI 475
I V ++ G +I
Sbjct: 423 IQGVKESTLKGRII 436
>gi|222529490|ref|YP_002573372.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Caldicellulosiruptor bescii DSM 6725]
gi|222456337|gb|ACM60599.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
bescii DSM 6725]
Length = 471
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/458 (28%), Positives = 202/458 (44%), Gaps = 75/458 (16%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------IAKC 114
T+GC N DSE +AG L+A GY T+N +EAD+ + NT S + + +
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 115 KSAKKPLVV--AGCVPQ-------------------GSRDLKELEGVSIVGVQQIDRVVE 153
K K L+V GC+PQ G++ L + + + + V+E
Sbjct: 102 KEKKPDLIVGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKTVIE 161
Query: 154 VVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
V E+ + + +P RR + I GC C+YC + RG S
Sbjct: 162 VSED------------EDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERS 209
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAI-----------V 260
E ++ + + +G+KEV L ++ +YG+D+G + P LL + V
Sbjct: 210 RRPEEIIYEIEQLAQNGIKEVTLLGQNVNSYGKDLGNSITFPKLLEKVNEIKGIERIRFV 269
Query: 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 320
P D S L + M + + EH+ H+PVQSGS +L AMNR Y
Sbjct: 270 TSHPKDLSDELIVAMRDLEKVCEHI----------------HLPVQSGSTRILKAMNRHY 313
Query: 321 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380
T D+ +V+ L +P + I TDII GFPGETDEDF T+++ ++ +F + + R
Sbjct: 314 TKEDYLRLVEKLKTNIPDIAITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKR 373
Query: 381 PGTPAARM-KKVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVG 437
GTPA +M +VP + +R + L + E A M G+ I I + L G
Sbjct: 374 RGTPAEKMPNQVPDDIKYQRFQRLVKLVEEIALKKNRQMLGKTYEILIDSHSKRNNLLAG 433
Query: 438 HTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
T+ V V + + VKI ++GEVI
Sbjct: 434 RTRTNKVVNVKCSEEFMFKFVNVKIFEAAEHWLYGEVI 471
>gi|398311484|ref|ZP_10514958.1| hypothetical protein BmojR_19315 [Bacillus mojavensis RO-H-1]
Length = 451
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 222/458 (48%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + A + G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAKLLRELDARV--QGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + LH+P+QSGS+ VL M R+YT+ F ++ L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVRHLHIPIQSGSNTVLKRMRRKYTMEFFADRLNKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE +F ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKENRFSELHVFPYSKRTGTPAARMEDQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAA-----DGIHLVGHTKGYVQVLVPSTGNMLG 455
L ++ + + E + I A + VG+T Y++V+ T +M+G
Sbjct: 357 HRLIALSDQLAKEYASDYENEVLEIIPEEAFKESDEENMYVGYTDNYMKVVFKGTEDMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ V+D I R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDDITEQMRMSS 451
>gi|433654962|ref|YP_007298670.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293151|gb|AGB18973.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 471
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 215/443 (48%), Gaps = 36/443 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
+++T+GC N DSE +AG L+ GY TDN E+AD+ L NT + A + +
Sbjct: 35 FHIETYGCQMNVHDSEKLAGMLTEMGYTHTDNLEDADVILFNTCCVREHAEIRIFGRVSQ 94
Query: 117 AK-----KP---LVVAGCVPQGSRDLKELEG----VSIV-GVQQIDRVVEVVEETLKGHE 163
K KP L + GC+ Q ++ ++ + IV G + + E+++E+L
Sbjct: 95 LKELKQRKPNIILGICGCMMQEKEVVEAIKNDYPYIDIVFGTHNLFKFPELLQESLNSDT 154
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + K D+P R + I GC CTYC + RG S ++
Sbjct: 155 TIIDIWDDNKSIVEDIPIRRAEGLKAWVNIIYGCNNFCTYCIVPYVRGREKSREPHDILN 214
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMT 276
++++ +G KE+ L ++ +YG D+ +L ++N I DG +R +
Sbjct: 215 EIKSLANEGFKEITLLGQNVNSYGNDLPTKIDFADLLYMINDI------DGIERIRFMTS 268
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P I + L L C + LH+PVQSGS+ +L MNR+Y+ + +++ L + +
Sbjct: 269 HPKDISDKLIFAMRDLDKLCEH--LHLPVQSGSNKILERMNRKYSRERYLEIINKLRDNI 326
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
PG+ I TDII GFPGETD+DF T++L+KE ++ + + R GTPA +M +V +
Sbjct: 327 PGIAITTDIIVGFPGETDKDFQDTLDLVKEVRYDSAYTFIYSKRKGTPAEKMSNQVDEDI 386
Query: 396 VKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGN 452
KR EL ++ + M+G+V + + + D L G T+ V +
Sbjct: 387 KHKRLEELINLQNIISIEKNNEMKGKVVEVLVEGTSKRDSEKLTGRTRTNKIVHFKAKPE 446
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
++G VKI W++ GE+I
Sbjct: 447 LIGKFVNVKIIDTKAWTMQGELI 469
>gi|448459772|ref|ZP_21596822.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
gi|445808224|gb|EMA58298.1| MiaB-like tRNA modifying enzyme [Halorubrum lipolyticum DSM 21995]
Length = 440
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/370 (33%), Positives = 193/370 (52%), Gaps = 29/370 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ ++ LVV GC+ + E V +I EV L G E +
Sbjct: 63 ELEAETAELVVTGCMALAQGEAFEEADVD----AEILHWDEVPSHVLNG-ECPTVTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +VE+ V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVETNVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDKGDRKLPELLDRI---CDIDGEFRVRLGMANPGGIHGIHEELADV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
R+ +Y F+H PVQSGSD VL M R++ + FR VV T + + ++TD I GFP
Sbjct: 228 FARNEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVATFDDRLDHWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
E++ D ++++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 288 TESEADHERSMDLLTEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEV 347
Query: 406 VFEAFTPYLG 415
V EA+ +G
Sbjct: 348 VGEAYESMVG 357
>gi|239617912|ref|YP_002941234.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kosmotoga
olearia TBF 19.5.1]
gi|239506743|gb|ACR80230.1| RNA modification enzyme, MiaB family [Kosmotoga olearia TBF 19.5.1]
Length = 440
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 222/450 (49%), Gaps = 53/450 (11%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAK 113
I +TFGC N +D+E MAG L + GY + DN EEAD+ ++NT + A L + +
Sbjct: 3 IAFRTFGCQMNVNDTETMAGILKSNGYVIVDNEEEADVVIVNTCAVREKAEKKLYGKLGR 62
Query: 114 CKSAKKP-----LVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHE-VR 165
+S KK + V+GCV + ++ LK E + G + I RV E +E +KG V
Sbjct: 63 LRSLKKKNRNLIIGVSGCVAEKEKEALLKREEVNFVFGTRSISRVNEFLERAIKGERFVE 122
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
L P++R ++ + I GC C+YC + RG S ++E ++ V+
Sbjct: 123 LSDFIDEINSSTPRLRTSRHHAWVTIIYGCNKFCSYCIVPYTRGREKSRSMEDILNEVKR 182
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
+ + G +EV ++ +YG+D+ DGST+ + + +E +
Sbjct: 183 LASKGYREVTYLGQNVDSYGKDLA----------------DGSTLAK--LIRETLKIEQI 224
Query: 286 KEIAEVLRHPCVYS---------------FLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
+ I + +P +S +H+P+QSGS+ +L AMNR YT ++ ++
Sbjct: 225 ERIWYLTSYPKDFSDELIDVIATSKRVSRSIHLPIQSGSNRILKAMNRGYTREEYLDLIR 284
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK 390
+ VP I+TDII GFPGE+++D+ QT +L++E F +V+++ + PR GT +A+ K
Sbjct: 285 RIRTKVPDASISTDIIVGFPGESEDDYLQTKSLLEEVIFERVNLAIYSPREGTISAKYMK 344
Query: 391 --VPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAADGIHLVGHTKGYVQVL 446
VP + +R +EL + + + E G+ I + DG+ L G T V
Sbjct: 345 DDVPHEIKVRRLQELLELQKCLNRKINSEYIGKTVEIIVEAKHKDGM-LYGRTINNKIVF 403
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
+ ++G+ A + I ++G++++
Sbjct: 404 FHGSEELIGSKAKITIEKTTAGPLYGQLVE 433
>gi|357058862|ref|ZP_09119708.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
gi|355373208|gb|EHG20529.1| hypothetical protein HMPREF9334_01425 [Selenomonas infelix ATCC
43532]
Length = 437
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/431 (31%), Positives = 202/431 (46%), Gaps = 25/431 (5%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------IAKCK 115
+GC N +D+E M GQL GY T+ E AD+ LINT ++A D + I K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYERTEEMETADVILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 116 SAKKPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 168
L+ +AGC+ Q D ++ + V G ++ + +V E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELARIVAEIEAEHSPVVDVTL 129
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
K A +LP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 ADKTIAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEIVAEVRRAVA 189
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+G EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYTEVTLLGQNVNSYGKDHKQADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+ +H C + +H+PVQ GS+ +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 248 IKNGQHICEH--IHLPVQYGSNRILKAMNRVYTVEKYRERAQRVREALPNASLTTDLIVG 305
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 407
FPGETDEDF + + ++E ++ + + R GTPAA M+ +V V R L
Sbjct: 306 FPGETDEDFAEMLAFLREMRYDSAYTFLYSKRSGTPAATMECQVSDDVKHARLNALMEEQ 365
Query: 408 EAFTPYLGMEGRVERIWITEIAA---DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
A + + R + + A D G T+ VL P G VKIT
Sbjct: 366 NAISRAINDRLRGATLEVMVEGASKNDPTVWSGRTRTNKIVLFPHGAECEGDFVQVKITQ 425
Query: 465 VGRWSVFGEVI 475
W + GE+I
Sbjct: 426 PQTWVLKGEII 436
>gi|312793678|ref|YP_004026601.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180818|gb|ADQ40988.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 471
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/438 (30%), Positives = 209/438 (47%), Gaps = 29/438 (6%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------I 111
++ T+GC N DSE +AG L+A GY T+N +EAD+ + NT S + +
Sbjct: 39 HIVTYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPL 98
Query: 112 AKCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGH 162
+ K K L+ V GC+PQ ++L + I G + + + +++ T K
Sbjct: 99 KRLKDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKKT 158
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + + + +P RR + I GC C+YC + RG S E ++
Sbjct: 159 VIDVSEDEDVVVEGIPTARRQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYE 218
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+ + +GVKEV L ++ +YG+D+G + P LL V E+ +G +R ++P
Sbjct: 219 IEQLAQNGVKEVTLLGQNVNSYGKDLGNGITFPKLLEK-VNEI--EGIERIRFVTSHPKD 275
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + L L C +H+PVQSGS +L AMNR YT D+ +V+ L +P +
Sbjct: 276 LSDELIVAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIA 333
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
I TDII GFPGETDEDF T+++ ++ +F + + R GTPA +M +VP + +R
Sbjct: 334 ITTDIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQVPDDIKHQR 393
Query: 400 SRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + E A M G+ I I + LVG T+ V V +
Sbjct: 394 FQRLVKLVEEIALKKNRQMLGKTYEILIDGHSKRNNLLVGRTRTNKVVNVKCPEEYMFKF 453
Query: 458 ALVKITSVGRWSVFGEVI 475
VKI ++GEVI
Sbjct: 454 VNVKILEAAEHWLYGEVI 471
>gi|258645507|ref|ZP_05732976.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
15470]
gi|260402861|gb|EEW96408.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Dialister invisus DSM
15470]
Length = 478
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 223/442 (50%), Gaps = 33/442 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
+++T+GC N+SD+E ++GQL GY D ++AD+ ++NT Q+A + + K
Sbjct: 43 FIETYGCQMNESDTERISGQLEELGYVPADILDDADVVILNTCSIRQNAEEKVYGKIGEV 102
Query: 118 KKP--------LVVAGCVPQGSRDLKELEGVSIV----GVQQIDRVVEVVEET-LKGHEV 164
KK L +AGC+ Q ++ K +E + ++ G I + ++V +G V
Sbjct: 103 KKLKGKKPGVLLGIAGCMAQENKG-KLIERMPVIDFVIGPYHIHDLKDIVSRRGAEGSHV 161
Query: 165 RLLHRKKLPALD---LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ D L VR+++ +PI GC CTYC + RG S T++ +
Sbjct: 162 VMTQMNPNRVNDYSELHSVRKSRIFAWVPIMQGCNKFCTYCIVPYVRGRETSRTIDDICR 221
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ + +G KE+ L ++ +YG D G + L++AI DG +R ++P
Sbjct: 222 EIEKLAREGYKEITLLGQNVNSYGLDFHDGTDFGSLIHAIDK---IDGIKRVRYMTSHPK 278
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + + P V +H+PVQ G++ +L MNR YT+ F+ ++ + E +PG+
Sbjct: 279 DMT--FGMVDAMAASPKVVRHMHLPVQHGANEILRRMNRGYTIERFKELLKYVREKMPGI 336
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 398
+ TD+I GFPGET++ +T+ L+KE KF + + PR GTPAARM +V AV +
Sbjct: 337 TVTTDLITGFPGETEDMHEETLTLLKEMKFDSAYTFIYSPRRGTPAARMTNQVSDAVCHR 396
Query: 399 RSRELTSVFEAFTPYLG--MEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM-L 454
R +E+ +V + L MEG+V + E + + G T G V+ P G++ +
Sbjct: 397 RLQEIMNVENEISLSLNKEMEGKVYTVIAEGETKQNPDNWFGRTSGNKMVIFPKAGSLSV 456
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G V++ + W + G +++
Sbjct: 457 GDILKVRVDTAQTWILKGTIVE 478
>gi|222112105|ref|YP_002554369.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acidovorax
ebreus TPSY]
gi|221731549|gb|ACM34369.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Acidovorax ebreus TPSY]
Length = 448
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 222/449 (49%), Gaps = 42/449 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
++ +++KTFGC N+ DS+ MA L +A GY TD+ E+AD+ L NT Q + +
Sbjct: 2 SKKVFIKTFGCQMNEYDSDKMADVLGAAQGYEPTDDPEQADLILFNTCSVREKAQEKVFS 61
Query: 110 LIAKCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
+ + K K V V GCV +G +K V +V G Q + R+ +++ + +
Sbjct: 62 DLGRVKHLKDKGVLIGVGGCVASQEGEEIIKRAPFVDVVFGPQTLHRLPDLL--NARAAK 119
Query: 164 VRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
R P ++ LP R + I GC C+YC + RG S E +
Sbjct: 120 ARPQVDISFPEIEKFDHLPPARVEGASAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDV 179
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIG 274
+ V + GV+EV L ++ AY +G + +LL VAE+P G +R
Sbjct: 180 LVEVAGLADQGVREVTLLGQNVNAYLGAMGDTAEKADFALLLE-YVAEIP--GIERIRFT 236
Query: 275 MTNP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
++P P ++E +I +++ H LH+PVQ GSD +L AM R YT ++++ +
Sbjct: 237 TSHPNEFTPRLIEAYAKIPKLVSH------LHLPVQHGSDRILMAMKRGYTAMEYKSTIR 290
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 389
L + P M +++D I GFPGET+EDF + + LI + +F F PRPGTPAA +
Sbjct: 291 KLRAIRPDMAMSSDFIVGFPGETEEDFQKMMKLIDDVRFDNSFSFIFSPRPGTPAANLHD 350
Query: 390 KVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVL 446
P V +R +EL +V + E G V+R+ + ++ DG L+G T+ V
Sbjct: 351 DTPHEVKLRRLQELQAVINRNILEISQERVGTVQRLLVEGVSKRDGSELMGRTECNRVVN 410
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVI 475
P ++G VKIT +++ GEV+
Sbjct: 411 FPGHERLIGQMIDVKITEARTYTLRGEVV 439
>gi|336234636|ref|YP_004587252.1| MiaB family RNA modification protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|335361491|gb|AEH47171.1| RNA modification enzyme, MiaB family [Geobacillus
thermoglucosidasius C56-YS93]
Length = 451
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q +++E VE+ +
Sbjct: 63 RAIRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYVEQFQRERRPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + ++ G LRI I
Sbjct: 182 QQLVNAGYKEIVLTGIHTGGYGTDMKDYNFAALLRDLDEQVV--GLKRLRISSIEASQIT 239
Query: 283 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ +VLR + LH+P+QSGS+ VL M R+YT F + L E+ P + I
Sbjct: 240 D---EVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFPELAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T N ++E +F ++H+ + R GTPAARM +V V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEEVKHDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
R L ++ + EG+V + E + + +G+T Y++V P+T M+G
Sbjct: 357 RRLIALSDQLAKEYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYLKVRFPATEEMVG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKIT G GE +++ V D I + ++SS
Sbjct: 417 EIVKVKITKAGYPYNEGEFVRV---VADDIPQSVKLSS 451
>gi|290968596|ref|ZP_06560134.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
type_1 str. 28L]
gi|335049650|ref|ZP_08542637.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
199-6]
gi|290781249|gb|EFD93839.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Megasphaera genomosp.
type_1 str. 28L]
gi|333762385|gb|EGL39883.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Megasphaera sp. UPII
199-6]
Length = 442
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 139/448 (31%), Positives = 216/448 (48%), Gaps = 36/448 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC 114
+ G + Y+ T+GC N SDSE AGQL A GY LT+ + AD+ L+NT +T K
Sbjct: 3 VLGNKFAYIATYGCQMNSSDSERYAGQLEALGYRLTEEMDVADVILLNTCCVRETAEGKT 62
Query: 115 ----------KSAKKPLVVA--GCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 159
K LV+A GC+ Q R + + +V G I ++ +++E
Sbjct: 63 LGKIGELKHYKERNPELVIAVTGCMAQEWQERLFERAPHIDLVIGTHNIHKLTALLQERQ 122
Query: 160 KGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
L LPA DLP R +KF +PI GC CTYC H RG S V
Sbjct: 123 GKSGHALAADMSLPAFHDLPTKRFHKFFAWVPIMNGCNKFCTYCIVPHVRGREVSRPVAE 182
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMT 276
+V V + DG KEV L ++ +YG D+ G + L+ A+ E P G +R +
Sbjct: 183 IVREVAQLGKDGYKEVTLLGQNVNSYGLDLRDGTDFGTLVEAL--ETVP-GVERIRYMTS 239
Query: 277 NP----PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+P P +++ + + V+ H LH+P+QSGS+A+L MNR YT+ + ++
Sbjct: 240 HPKDMTPAMIDAIAAGSRVVHH------LHLPIQSGSNAMLKRMNRGYTVEHYLDLIAYA 293
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKV 391
+ + + + TD+I GFPGET+ F +T+ LI++ + + + PR GTPAA +V
Sbjct: 294 RKKMSDLVLTTDLIVGFPGETEAMFQETLQLIRQVGYDMAYTFIYSPRTGTPAATWPDQV 353
Query: 392 PSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVP 448
+A +R + L + + L MEGR + + D H G T+G ++
Sbjct: 354 AAAEKSRRLQCLMDIQNETSLALNREMEGRSYEVIVEGPTKNDARHWFGRTRGNKMIIWE 413
Query: 449 STGNM-LGTSALVKITSVGRWSVFGEVI 475
G++ +G +A V + W + G VI
Sbjct: 414 EDGSVQIGDTADVMVDKGQTWVLKGHVI 441
>gi|328944037|ref|ZP_08241502.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
gi|327492006|gb|EGF23780.1| tRNA-I(6)A37 thiotransferase [Atopobium vaginae DSM 15829]
Length = 460
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 215/446 (48%), Gaps = 35/446 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS-----------AM 107
+T +KTFGC N DSE +AG L G EEADI + T S A+
Sbjct: 15 KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 74
Query: 108 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
L+ S K+ + V GC+ Q G++ + + V +V G + V E++ E + +
Sbjct: 75 SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 134
Query: 163 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
+ V + + + + DLP R F +PI GC CT+C + RG S +E
Sbjct: 135 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 194
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V VR + DGV+EV L ++ +YGRD+ P ++ ++ G +R +NP
Sbjct: 195 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 252
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + IA + P V LH+ VQSGS +L AM+R YT + V+D L +P
Sbjct: 253 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 310
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 397
+ ++TDII GFPGET+EDF +T++L++E ++ + RPGTPAA ++ P V++
Sbjct: 311 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQ 370
Query: 398 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAA----DGIHLVGHTKGYVQVLV-----P 448
+R LT + E Y + + + + + D LVGH+ VL
Sbjct: 371 QRFNRLTDLIEELA-YKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTVLFSLPKDA 429
Query: 449 STGNMLGTSALVKITSVGRWSVFGEV 474
S + +G V + W + G++
Sbjct: 430 SAQDYIGKMCEVYVEEAKTWYLRGKL 455
>gi|448363530|ref|ZP_21552130.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
gi|445646343|gb|ELY99332.1| MiaB-like tRNA modifying protein [Natrialba asiatica DSM 12278]
Length = 417
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 223/433 (51%), Gaps = 39/433 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHQVDGPDEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + + DL I G + + E + + G ++LH +P +
Sbjct: 59 RRAEELSEETADL------FITGCMALAQGEEFAQADVDG---QVLHWDAVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TKHA G + S ++E V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADA 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFGEALEYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E+++
Sbjct: 288 TETDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSAAKREI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V +A+ +G E R + + + E AD + Y Q++V + G G V +
Sbjct: 348 VADAYADMVG-ERREDVLVVEEGTADSVKC--RDSAYRQIIVQNASEHGIEPGDFIDVDV 404
Query: 463 TSVGRWSVFGEVI 475
T+ FGE +
Sbjct: 405 TAHETMYAFGEPV 417
>gi|451817753|ref|YP_007453954.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
gi|451783732|gb|AGF54700.1| threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
[Clostridium saccharoperbutylacetonicum N1-4(HMT)]
Length = 467
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 214/443 (48%), Gaps = 31/443 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------T 109
G + T GC N ++E MA + GY +TD AD+++INT S +
Sbjct: 32 GKRFVAFATLGCRVNHYETEAMAEKFIQEGYEVTDFENFADVYVINTCSVTNMSDKKSRQ 91
Query: 110 LIAKCKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 165
+I++ + + ++A GC Q ++ ++EGV +V G + +V + + + +
Sbjct: 92 IISRARRRNQEAIIAAVGCYSQVAPEEVAKIEGVDVVLGTRNKGDIVYYINKAKDEQKSQ 151
Query: 166 L-----LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
L L K+ L++ + + +K L I GC C YC + RG S E ++
Sbjct: 152 LMVGEVLKNKQFEELNIEEYQ-DKTRAFLKIQDGCNRFCAYCVIPYTRGATCSKDPEKVL 210
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPP 279
++ + G KE+ LS T +YG D+ N+ ++ ++ E+ +G +RIG P
Sbjct: 211 NEIKNLSQHGFKEIILSGIHTASYGVDLDGNITLI--TLLEEIEKLEGIERVRIGSIEPS 268
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
F + + + ++ C H+ +QSG DA L MNR YT ++ V+ + E +
Sbjct: 269 FFTDEVIGKIKDMKKLCPQ--FHLSLQSGCDATLKRMNRRYTAKEYEDAVNKIRENLKDA 326
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 398
I TD+I GFPGETDE+FN+T +K K + HI +F PR GT AA M ++ V K
Sbjct: 327 SITTDVIVGFPGETDEEFNETYEFLKRLKLTKTHIFKFSPRKGTKAADMTNQIDGTVKDK 386
Query: 399 RSRELTSVFEA----FTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST-GN 452
RS+ L + + F+ L G E ++ + E+ G+T+ YV+V +P+ N
Sbjct: 387 RSKTLIELNDKNEGDFSKSLIGRE--LDVLLEQEVTNKKDVFEGYTRNYVKVEIPNVDAN 444
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
M+G KI V G++I
Sbjct: 445 MIGKIITCKIEEANGEYVVGKLI 467
>gi|448366100|ref|ZP_21554354.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
gi|445654709|gb|ELZ07560.1| MiaB-like tRNA modifying protein [Natrialba aegyptia DSM 13077]
Length = 417
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/431 (30%), Positives = 221/431 (51%), Gaps = 35/431 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ ++ + +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 118 KKP---LVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKKLP 173
+ L + GC+ L + E + V Q+ EV E G E P
Sbjct: 65 SEETADLFITGCMA-----LAQGEEFAQADVDSQVLHWDEVPEAVTNG-ECPTTTPDAEP 118
Query: 174 ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKE 233
LD V ILPI GC+ C+YC TKHA G + S ++E V + R +I G KE
Sbjct: 119 ILD-------GVVGILPIARGCMSNCSYCITKHATGKIDSPSIEENVEKARALIHAGAKE 171
Query: 234 VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL- 292
+ ++ +DTG YG D G L A + EL +G +R+GM NP + +E+A+V
Sbjct: 172 IRITGQDTGVYGWDEGERKLHRLLAEICEL--EGDFRVRVGMANPKGVHGIREELADVFA 229
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T E + ++TD I GFP E
Sbjct: 230 EYDELYGFLHAPVQSGSDDVLGDMRRQHQVEEYVEVVETFDEALEYWTLSTDFIVGFPTE 289
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS-----VF 407
TD D Q++ L++E + ++++++F RPGT AA MK + + K+RS+E++ V
Sbjct: 290 TDHDHEQSMALLRETRPEKINVTRFSKRPGTDAADMKGLGGTIKKERSKEMSEVKRDIVA 349
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKITS 464
+A+ +G E R + + + E AD + Y Q++V + G G + +T+
Sbjct: 350 DAYADMVG-ERREDVLVVEEGTADSVKC--RDSAYRQIIVQNASEHGIEPGDFIDLDVTA 406
Query: 465 VGRWSVFGEVI 475
FGE +
Sbjct: 407 YETMYAFGEPV 417
>gi|317129126|ref|YP_004095408.1| tRNA-i(6)A37 thiotransferase protein MiaB [Bacillus
cellulosilyticus DSM 2522]
gi|315474074|gb|ADU30677.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus cellulosilyticus
DSM 2522]
Length = 516
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/437 (28%), Positives = 220/437 (50%), Gaps = 26/437 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAKCK 115
++T+GC N+ DSE MAG L G+ T NS++AD+ L+NT ++A + + I K
Sbjct: 77 IRTYGCQMNEHDSENMAGILLNMGFESTSNSDDADVILLNTCAIRENAENKVFGEIGHLK 136
Query: 116 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
+ K+ + V GC+ Q +R L++ + V ++ G I R+ +++ + E
Sbjct: 137 TMKRERPELIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPTLLKNAIFNKEMV 196
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ ++P+ R+ + + I GC CTYC + RG S E ++ V
Sbjct: 197 VEVWSKEGDIIENMPRARKGQIQGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIEEV 256
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + +G KE+ L ++ AYG+D+ V++ L ++ E+ +R ++P +
Sbjct: 257 RHLARNGYKEITLLGQNVNAYGKDL-VDMDYGLGDLMDEIRKIDIPRVRFTTSHPKDFDD 315
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HL E+ + + + +H+PVQSG+ VL M R+YT ++ T+ + E +P T
Sbjct: 316 HLIEV--LAKGGNLVEHIHLPVQSGNSDVLKLMARKYTREEYVTLAKKIKEAIPHASFTT 373
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII GFP ETD F T++L++E ++ + + PR GTPAA+M +P V K+R +
Sbjct: 374 DIIVGFPNETDAQFEDTLSLVREMEYDSAYTYVYSPREGTPAAKMNDNIPMEVKKERLQR 433
Query: 403 LTSVFEAFTPYLG--MEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L ++ + +GRV + + E + L G T+ V + +G
Sbjct: 434 LNALVNEISAEKNKSYQGRVVEVLVEGESKKNPDILAGRTRTNRLVNFKGAKSSIGEIVY 493
Query: 460 VKITSVGRWSVFGEVIK 476
VKIT WS+ G V++
Sbjct: 494 VKITEAKSWSLDGHVVE 510
>gi|384428234|ref|YP_005637593.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
gi|341937336|gb|AEL07475.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Xanthomonas campestris
pv. raphani 756C]
Length = 485
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/458 (31%), Positives = 232/458 (50%), Gaps = 43/458 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT----QSAMDTLIAKC- 114
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NT + A + + ++
Sbjct: 39 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98
Query: 115 -----KSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
K+ KP++ V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 99 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158
Query: 165 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
++ + ++ D LP+ R + + I GC C++C + RG S E ++
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVE 218
Query: 223 VRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRI 273
V + A GV+E+ L ++ GAYG D G +L +L+ I A++ DG +R
Sbjct: 219 VAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--DGIGRIRF 275
Query: 274 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
++P LE + + R P + ++LH+PVQ+GSD +LSAM R YT +F++ + L
Sbjct: 276 TTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSKIRKL 332
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 391
+ PG+ I++D I GFPGETD DF++T+ LI++ F Q + RPGTPA+ ++
Sbjct: 333 RAVRPGISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPASDLEDDT 392
Query: 392 PSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVP 448
P AV + R L + A + M G V+R+ + + D L G T+ V P
Sbjct: 393 PDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLVEGPSRRDANELTGKTENMRPVNFP 452
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIA 486
++G V IT S+ G + Q+DD A
Sbjct: 453 GNPRLVGQFVDVLITEALSNSLRGRI-----QLDDSAA 485
>gi|406667388|ref|ZP_11075146.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
gi|405384756|gb|EKB44197.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
Length = 511
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 212/440 (48%), Gaps = 28/440 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----------- 109
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NT + +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 110 -LIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL E+ + + + +H+PVQSGS+ +L M R+YT F +VD + +PG+ +
Sbjct: 305 DDHLIEV--LAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII G+P ET+E F +T++L ++ F + PR GTPAA+M V K R
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMVDNVTEEEKKDRL 422
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWI--TEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
L +V ++ G+EG+ + + + D + L G+T+ V + +G
Sbjct: 423 HRLNAVVSEYSAKALKGLEGQTVEVLVEGSSKRRDDV-LAGYTRKNRLVNFKADPKFIGK 481
Query: 457 SALVKITSVGRWSVFGEVIK 476
VKI +S+ GE ++
Sbjct: 482 LVNVKILEAKSYSLMGEFVE 501
>gi|222100720|ref|YP_002535288.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
gi|221573110|gb|ACM23922.1| MiaB-like tRNA modifying enzyme [Thermotoga neapolitana DSM 4359]
Length = 434
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/408 (32%), Positives = 211/408 (51%), Gaps = 39/408 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLIN----TQSAMDTLIAKCK 115
T+ ++TFGC NQ +SEYMA QL GY + + EA ++IN TQ + K
Sbjct: 3 TVRIETFGCKVNQYESEYMAEQLEKAGYTVLP-AGEASYYIINSCVVTQEVEKKVKRLVK 61
Query: 116 SAKKP-----LVVAGCVPQ-GSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR 169
S ++ +++ GC Q + K+L ++G+ + +V+ + +L G + ++
Sbjct: 62 SIRRKNRDAKIILTGCFAQLFPEEAKKLPVNMVLGISEKKNIVDHLL-SLNGEQKLVVSA 120
Query: 170 KKLPALDLPKVR---RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRT 225
P + KV+ ++ + + GC CTYC + ARG + S +E
Sbjct: 121 PDSPVYE--KVKGSFEDRTRAYIKVEDGCDNGCTYCAIRFARGTKVRSKPLELFKEEFEK 178
Query: 226 VIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285
++ G KE+ ++ + G YG+DIG L LL IV +P G +R+ N I +
Sbjct: 179 MVIKGYKEIVITGVNLGKYGKDIGTTLVDLLK-IVEHVP--GDYRVRLSSLNVEDITD-- 233
Query: 286 KEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
E+ EV R +P + LH+ VQSGSD VL M R Y+ SDF VV+ L + P I TD
Sbjct: 234 -ELVEVFRDNPRLCPHLHISVQSGSDRVLKRMGRRYSSSDFLKVVEKLRSINPDFSITTD 292
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--------KKVPSAVV 396
II GFPGETDEDF +TV L++E +F +VHI ++ PRPGTPA+ KK ++
Sbjct: 293 IIVGFPGETDEDFLKTVKLLEEVEFSRVHIFRYSPRPGTPASTFSDAVPEHKKKERLNIL 352
Query: 397 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ 444
K++++E++ ++ M + R+ A G+ L G+ + YV+
Sbjct: 353 KEKAKEVSHRYKR-----RMVNKKRRVLAEWYIAKGV-LSGYDEYYVK 394
>gi|448502690|ref|ZP_21612711.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
gi|445693887|gb|ELZ46027.1| MiaB-like tRNA modifying enzyme [Halorubrum coriense DSM 10284]
Length = 440
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 136/434 (31%), Positives = 212/434 (48%), Gaps = 38/434 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 171
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSETTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPAYVLNG-ECPTVTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V +LPI GC+ C+YC TK A G + S V V + R ++ G
Sbjct: 117 EPVLD-------GVVGLLPIARGCMSNCSYCITKFATGRVDSPPVAENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+AE
Sbjct: 170 KEIRVTGQDTGVYGWDDGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAE 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y F+H PVQSGSD VL M R++ + FR VVDT E + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVDTFDERLDHWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P E++ D ++++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTESEADHERSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM---LGTSALVK 461
V EA+ +G E + + E D + Y Q++V + +G V+
Sbjct: 347 VVGEAYESMVGE--TFEVLVVEEGTGDSVKC--RDGAYRQIIVQGAADRGVEVGDFLTVE 402
Query: 462 ITSVGRWSVFGEVI 475
+T FG+ +
Sbjct: 403 VTGHNTVYAFGDPV 416
>gi|404370256|ref|ZP_10975579.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
gi|226913622|gb|EEH98823.1| MiaB/RimO family radical SAM methylthiotransferase [Clostridium sp.
7_2_43FAA]
Length = 434
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 220/433 (50%), Gaps = 43/433 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
+ T GC N +SE MA + GY + D SE AD+++INT + + +I++
Sbjct: 3 VAFSTLGCRVNVYESEAMAEKFIREGYEVVDASEAADVYVINTCTVTNMGDKKSRQIISR 62
Query: 114 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEV 164
+ + VA GC Q +++ E+ GV +V G + VV V E + H
Sbjct: 63 ARRLNENATVAVVGCYSQIAPKEVSEIPGVDVVLGTRNKGDVVYYVNKARDEGKSQVHVE 122
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+L KK L++ + + +K L I GC CTYC ++RG + S + ++ V
Sbjct: 123 GVLKNKKFEELNIEEYQ-DKTRAFLKIQDGCNRFCTYCIIPYSRGSVCSKDPKKVLEEVN 181
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-- 280
+ G KE+ LS T +YG D+ VNL ++ I +G +RIG P F
Sbjct: 182 KLAEHGFKEIILSGIHTASYGLDLEGSVNLIDIIEEIE---KVEGIERIRIGSIEPAFFT 238
Query: 281 --ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
++E +K+ ++ H H+ +QSG DA L MNR YT ++ V+ L E +P
Sbjct: 239 PEVIEKIKKFKKLCPH------FHLSLQSGCDATLKRMNRRYTAKEYADSVNLLRETMPD 292
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ I TD+I GFPGET+E+FN+T +K K + H+ ++ PR GT AA M+ ++ ++ +
Sbjct: 293 VSITTDVIVGFPGETEEEFNETYEFLKNIKLTKTHVFKYSPRKGTKAADMQDQLDGSIKE 352
Query: 398 KRSRELTSVF-----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST- 450
KRS+ L + E ++G E ++ + E+ DGI+ G+T+ Y++V VP T
Sbjct: 353 KRSKLLIELSNKNEKEFIEKFIGKE--MDALIEAEVKGKDGIY-EGYTRNYIKVQVPCTC 409
Query: 451 GNMLGTSALVKIT 463
++ G ++IT
Sbjct: 410 ADVTGKIVDIEIT 422
>gi|239833202|ref|ZP_04681531.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
3301]
gi|444312757|ref|ZP_21148333.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
intermedium M86]
gi|239825469|gb|EEQ97037.1| RNA modification enzyme, MiaB family [Ochrobactrum intermedium LMG
3301]
gi|443483945|gb|ELT46771.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
intermedium M86]
Length = 462
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 219/455 (48%), Gaps = 47/455 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL- 110
P +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A + L
Sbjct: 15 PNARKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLY 74
Query: 111 -----IAKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV---- 152
+ K K A++ + VAGCV Q G L+ V +V G Q R+
Sbjct: 75 SALGRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 134
Query: 153 -----EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 207
E V ET E + H LP+ + R+ L + GC CT+C +
Sbjct: 135 RVRSGEKVVETEYALEDKFEH---LPSPRREETRKRGVSAFLTVQEGCDKFCTFCVVPYT 191
Query: 208 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVA 261
RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ + +A
Sbjct: 192 RGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFR---LA 248
Query: 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 321
+P G LR ++P + + L LR + +LH+PVQSGSD +L AMNR +
Sbjct: 249 RIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMNRRHK 304
Query: 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 381
++ +++ + E+ P M ++ D I GFPGETD+DF T+ L++E + Q + ++ PRP
Sbjct: 305 ADEYVRLIERIREVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKYSPRP 364
Query: 382 GTPAARMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
GTP A + V AV +R + L ++ + + M GR + + + +VG
Sbjct: 365 GTPGADLDDHVEEAVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGR 424
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+ + V++ + +G VKITS G S+ +
Sbjct: 425 SPWLLPVIIDDNQDRIGDIIHVKITSTGTNSLIAQ 459
>gi|170078520|ref|YP_001735158.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. PCC 7002]
gi|229891029|sp|B1XQK7.1|MIAB_SYNP2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|169886189|gb|ACA99902.1| tRNA-i(6)A37 thiotransferase enzyme [Synechococcus sp. PCC 7002]
Length = 451
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 143/449 (31%), Positives = 215/449 (47%), Gaps = 40/449 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L GY T++ AD+ L NT + D K S
Sbjct: 8 HITTFGCQMNKADSERMAGILEEMGYHFTEDPYAADLVLYNTCTIRDNAEQKVYSYLGRQ 67
Query: 117 ----AKKP---LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKGHEV 164
+KP L+VAGCV Q R + EL+ I+G Q +R+ +++E+ G +V
Sbjct: 68 AKRKQEKPDLTLIVAGCVAQQEGESLLRRVPELD--LIMGPQHANRLQDLLEQVEGGSQV 125
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ D+ K RR+ V +NV GC CTYC RG S E++
Sbjct: 126 VATEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNEHCTYCVVPGVRGTEQSRYPEAIRAE 183
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIG 274
+ + G KEV L ++ AYGRD+ G N L + + V ++P G +R
Sbjct: 184 MEELGRQGFKEVTLLGQNIDAYGRDLPGTTPEGRNKYTLTDLLYYVHDVP--GIERIRFA 241
Query: 275 MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
++P + E L + + L P V H+P QSG + VL AM R YT +R +++T+
Sbjct: 242 TSHPRYFTERLIKACQEL--PKVCEHFHIPFQSGDNEVLKAMRRGYTHEKYRRIINTIRS 299
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394
+P I+ D I FPGET+E F T+ L+ E F Q++ + + PRPGTPAA S
Sbjct: 300 YMPDASISADAIVAFPGETEEQFENTLKLVDEIGFDQLNTAAYSPRPGTPAATWDNQLSE 359
Query: 395 VVK-KRSRELTSVF--EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST 450
VK R + L + +A GR+E + + + + ++G T+G
Sbjct: 360 EVKGDRLQRLNHLVAQKAAERSQRYAGRIEEVLVEDQNPKNPSQVMGRTRGNRLTFFEGE 419
Query: 451 GNML-GTSALVKITSVGRWSVFGEVIKIL 478
N L G VKIT +S+ GE ++ L
Sbjct: 420 INELKGKIVAVKITEARAFSLTGEAVEAL 448
>gi|428310522|ref|YP_007121499.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
gi|428252134|gb|AFZ18093.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Microcoleus sp. PCC 7113]
Length = 447
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 220/448 (49%), Gaps = 44/448 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ + + +A++ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSQDPNDANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 -------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
A LVVAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 AKRKHEQADLTLVVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRKDME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G +L L + V ++P G +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHLHTLTELLYYVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L + AE+ P V H+P QSG + +L AM R YT +R ++D + E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDKIREY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWENQLSEE 361
Query: 396 VK----KRSREL--TSVFEAFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVP 448
VK +R L T +A YL GR+E + + + D ++G TKG
Sbjct: 362 VKSDRLQRLNHLVSTKAAQASQRYL---GRIEEVLVEDQNLKDPTQVMGRTKGNRLTFFA 418
Query: 449 STGNML-GTSALVKITSVGRWSVFGEVI 475
N L G VKIT + +S+ G V+
Sbjct: 419 GDINELKGQLVKVKITEIRAFSLTGRVL 446
>gi|222098978|ref|YP_002533546.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Thermotoga
neapolitana DSM 4359]
gi|221571368|gb|ACM22180.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Thermotoga neapolitana
DSM 4359]
Length = 443
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 224/435 (51%), Gaps = 27/435 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------QSAMDTL-- 110
Y+KTFGC N++DSE MAG L G+ EEAD+ +INT + A L
Sbjct: 3 FYIKTFGCQMNENDSETMAGLLMKEGFTPASAPEEADVVIINTCAVRRKSEEKAYSELGQ 62
Query: 111 IAKCKSAKKPLV-VAGCVPQGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLL- 167
+ K K +K +V VAGCV + R+ L E ++G + + RV E V++ L+G +V L
Sbjct: 63 MLKIKRKRKLVVGVAGCVAEKEREKLLERGADFVLGTRAVPRVTEAVKKALEGEKVALFE 122
Query: 168 -HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
H + +LP++R ++ + I GC CTYC + RG S + ++ V+ +
Sbjct: 123 DHLDEYTH-ELPRIRTSRHHAWVTIIHGCDRFCTYCIVPYTRGRERSRPMADILEEVKKL 181
Query: 227 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
G +EV ++ AYG+D+ G +L LL +G + + P +
Sbjct: 182 AEQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK---IEGIERIWFLTSYPTDFSDE 238
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L E+ + ++P V +H+PVQSGS+ +L MNR YT ++ +++ + VP + I++D
Sbjct: 239 LIEV--IAKNPKVAKSVHLPVQSGSNRILKLMNRRYTKEEYLALLEKIRSKVPEVAISSD 296
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 402
II GFP ET+EDF +TV+L+++ +F +++++ + PR GT A + K VP +R +
Sbjct: 297 IIVGFPTETEEDFMETVDLVEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQF 356
Query: 403 LTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L ++ + L G+ RI + A +G+ + + + M+G A V
Sbjct: 357 LMNLQKRINRKLNERYRGKTVRIIVEAQAKNGLFYGRDIRNKI-IAFEGEDWMIGRFADV 415
Query: 461 KITSVGRWSVFGEVI 475
K+ + ++G+V+
Sbjct: 416 KVEKITAGPLYGKVV 430
>gi|448384078|ref|ZP_21563076.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
gi|445659067|gb|ELZ11879.1| MiaB-like tRNA modifying enzyme [Haloterrigena thermotolerans DSM
11522]
Length = 417
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 222/434 (51%), Gaps = 41/434 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + DL I G + + E + G ++LH ++P +
Sbjct: 59 RRAEELADETADL------FITGCMALAQGEEFARADVDG---QVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLAD 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GF
Sbjct: 227 VFAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDALEYWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF-- 407
P ETD D Q++ L++E + ++++++F RPGT AA +K + + K+RS+E++ V
Sbjct: 287 PTETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKRE 346
Query: 408 ---EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
EA+ +G E R + + + + AD + Y Q++V + G G ++
Sbjct: 347 IVGEAYADMVG-EVREDCLVVEDGTADSVKC--RDSAYRQIIVQNADDYGIAPGDFVDLE 403
Query: 462 ITSVGRWSVFGEVI 475
IT+ FGE +
Sbjct: 404 ITAHETMYAFGEPV 417
>gi|312110172|ref|YP_003988488.1| MiaB family RNA modification protein [Geobacillus sp. Y4.1MC1]
gi|423719206|ref|ZP_17693388.1| RNA modification enzyme, miaB family [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215273|gb|ADP73877.1| RNA modification enzyme, MiaB family [Geobacillus sp. Y4.1MC1]
gi|383368109|gb|EID45384.1| RNA modification enzyme, miaB family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 451
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/458 (29%), Positives = 220/458 (48%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSMADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q +++E VE+ +
Sbjct: 63 RAIRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYVEQFQRERRPINAV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 HNIMKTRVFEEMDVPEFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEIIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + ++ G LRI I
Sbjct: 182 QQLVNAGYKEIVLTGIHTGGYGTDMKDYNFAALLRDLDEQVV--GLKRLRISSIEASQIT 239
Query: 283 EHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ +VLR + LH+P+QSGS+ VL M R+YT F + L E+ P + I
Sbjct: 240 D---EVIDVLRRSDKIVRHLHIPLQSGSNTVLKRMRRKYTTEFFAERLARLREVFPELAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T N ++E +F ++H+ + R GTPAARM +V V R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFVREQRFSELHVFPYSKRTGTPAARMPNQVDEDVKHDRV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNMLG 455
R L ++ + EG+V + E + + +G+T Y++V P+T M+G
Sbjct: 357 RRLIALSDQLAKEYASQFEGQVLEVIPEERDKENLESGLYIGYTDNYLKVRFPATEEMVG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKIT G GE +++ V D I + ++SS
Sbjct: 417 EIVKVKITKAGYPYNEGEFVRV---VADDIPQSVKLSS 451
>gi|226312967|ref|YP_002772861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brevibacillus
brevis NBRC 100599]
gi|226095915|dbj|BAH44357.1| probable tRNA methylthiotransferase [Brevibacillus brevis NBRC
100599]
Length = 503
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 215/437 (49%), Gaps = 26/437 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
+++T+GC N+ DSE ++G L A GY +D+ E+AD+ L NT ++A D + +
Sbjct: 65 HVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGELGHM 124
Query: 118 KK--------PLVVAGCVPQGSR----DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 163
K+ L V GC+ Q + LK + V ++ G I R+ E++ + + E
Sbjct: 125 KRLKNNNPNLILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRDAMFSKEM 184
Query: 164 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 185 VIEVWSKEGDIVENMPKLREGNTKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 244
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 245 VRDLARQGFKEIMLLGQNVNAYGKDFE-DIKYGFGDLMDEIRKIDIPRVRFTTSHPRDFD 303
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+HL E+ + + + +H+PVQSGS VL M R+Y+ + +V + + +P + ++
Sbjct: 304 DHLIEV--LAKGGNLVEQIHLPVQSGSTEVLKRMARKYSREHYLELVRKIKDAIPNVSLS 361
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFPGETDE F T+++++E K+ + + PR GTPAA M+ VP V K R
Sbjct: 362 TDIIVGFPGETDEQFEDTISMVEEVKYDFAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 421
Query: 402 ELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
L V A ++ +V + + E + L G T+ V +++G
Sbjct: 422 RLNEVLAGIALEQNKKLQDQVVEVLVEGESRTNAEVLAGRTRTNKLVHFTGDKSLIGQYV 481
Query: 459 LVKITSVGRWSVFGEVI 475
+KIT W++ GE++
Sbjct: 482 HIKITDAKTWTLHGELV 498
>gi|384154942|ref|YP_005537757.1| tRNA-methylthiotransferase [Arcobacter butzleri ED-1]
gi|345468496|dbj|BAK69947.1| tRNA-methylthiotransferase [Arcobacter butzleri ED-1]
Length = 436
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/443 (29%), Positives = 214/443 (48%), Gaps = 30/443 (6%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINTQSAMDTLIAK 113
+ + ++++T GC N +DS+++ +L GY T N E+AD+ +INT S + + K
Sbjct: 1 MSSNKKLFIQTLGCQMNDTDSQHIQAELEKHKGYVTTQNIEDADLIIINTCSVRERPVQK 60
Query: 114 C----------KSAKKPLVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLK 160
K + V GC G +K V +VG + I ++ +VV+ +K
Sbjct: 61 LFSEIGQFNKKKKEGAKIGVCGCTASHLGEDIIKRAPYVDFVVGARNISKIKDVVD--VK 118
Query: 161 GH-EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
G EV + + + + + NK+ + I+VGC CTYC RG S E +
Sbjct: 119 GAVEVSIDNDE--STYEFSTAKTNKYRASVNISVGCDKKCTYCIVPSTRGEEISIPPEMI 176
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
V +V + G EV L ++ +YGR + + + RI T+P
Sbjct: 177 VEQVCKSVEQGAVEVMLLGQNVNSYGRRFSDKREKYTFTKLLQDVSKIDGLERIRFTSPH 236
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + I E ++P + +H+P+QSGS +VL AM R Y+ F + ELVP +
Sbjct: 237 PLHMDDEFIEEFAKNPKISKCIHMPLQSGSTSVLKAMKRGYSKEWFLNRASKMRELVPNL 296
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM--KKVPSAVVK 397
+I TDII FPGET EDF T++++++ KF Q+ ++ PRPGT A + K++P +
Sbjct: 297 RITTDIIVAFPGETQEDFLDTLDVVEQVKFDQIFNFKYSPRPGTEALNLKDKELPDEIGS 356
Query: 398 KRSRELTSVFEAFTPYL-----GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + E YL + G I + + +G + G+T Y+QV +
Sbjct: 357 QR---LIDLIELHKRYLEESMPKLIGETLNILVESLKPNG-EVCGYTDNYLQVFAKGSDE 412
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
+LG VKIT V R S+ GEV+
Sbjct: 413 LLGKFVNVKITDVTRTSLKGEVV 435
>gi|403383262|ref|ZP_10925319.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kurthia sp.
JC30]
Length = 505
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 229/459 (49%), Gaps = 30/459 (6%)
Query: 50 SLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--- 103
+++P+ G ++TFGC N D+E MAG + GY T++ EA++ L+NT
Sbjct: 50 NINPQFEGMGNGRKFLIRTFGCQMNVHDTEVMAGIFESLGYEATEDVNEANVILLNTCAI 109
Query: 104 -QSAMDTLIA--------KCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQID 149
++A + + K K+ L V GC+ Q ++ LK + V I+ G I
Sbjct: 110 RENAENRVFGELGHLKPLKTKNPDLLLGVCGCMSQEEAVVNKILKTYDQVDIIFGTHNIH 169
Query: 150 RVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 207
++ +++ E E V + ++ ++PKVR + I GC CTYC +
Sbjct: 170 KLPDILHEAYMSKEMVVDVWSKEGDVIENMPKVRNGGTKAWVNIMYGCDKFCTYCIVPYT 229
Query: 208 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 267
RG S + ++ VR + A G +E+ L ++ AYG+D+ ++ L ++ EL
Sbjct: 230 RGKERSRLPQDIIQEVRELAAQGYQEITLLGQNVNAYGKDLDMDYG--LGHLMDELRKID 287
Query: 268 STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 327
+R ++P ++L E+ + + + +H+PVQSGS ++L M R+YT +
Sbjct: 288 VPRIRFTTSHPRDFDDYLIEV--LAKKGNLVEHIHLPVQSGSSSMLKIMARKYTRERYLE 345
Query: 328 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387
+V + + +P + + TDII GFP ET+E F +T++L +E F + PR GTPAA+
Sbjct: 346 LVAKIKKAIPDVALTTDIIVGFPNETEEQFEETLSLYREVGFEMAFTYIYSPREGTPAAK 405
Query: 388 MK-KVPSAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYV 443
M+ VP V K R + L +V ++ G EG++ + + E + L G+T+
Sbjct: 406 MQDNVPMDVKKDRLQRLNAVVSEYSAKSLEGYEGKIVEVLVDGESKRNKDVLAGYTRRNK 465
Query: 444 QVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 482
V + ++G V++T V +S+ GE I ++ +V+
Sbjct: 466 LVNFRAPKEVIGKLVKVRVTDVKTYSLNGEFIGVVEKVE 504
>gi|428223576|ref|YP_007107673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
gi|427983477|gb|AFY64621.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Geitlerinema sp. PCC
7407]
Length = 450
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 219/448 (48%), Gaps = 40/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KS 116
++ TFGC N++DSE MAG L G+ +++ +A + L NT + D K +
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEFSEDPNDASVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
A++ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 ARRKHDDPNLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVFDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGLEQSRTPEAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTMLRIGMT 276
+ G KEV L ++ AYGRD+ P L V ++P G +R +
Sbjct: 187 ALSRQGYKEVTLLGQNIDAYGRDLPGATPEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L + AE+ P V H+P QSG + VL AM R YT+ +R ++ + E
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTVEKYRRIIQMIREY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+E F T+ L+ + F ++ + + PRPGTPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEEQFENTLKLVDDIGFDLLNTAAYSPRPGTPAATWEGQLSEE 361
Query: 396 VK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPS 449
VK +R L SV +A L + R+E + + + D ++G T+G +
Sbjct: 362 VKADRLQRLNHLVSV-KAAERSLRYQDRIEEVLVEDQNPKDPSQVMGRTRGNRLTFFAGD 420
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIKI 477
+ G VKIT V +S+ GE + +
Sbjct: 421 IQELRGQVVKVKITEVRAFSLTGESLLV 448
>gi|411120095|ref|ZP_11392471.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
gi|410710251|gb|EKQ67762.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Oscillatoriales cyanobacterium JSC-12]
Length = 454
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 220/450 (48%), Gaps = 44/450 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ D E A++ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEKMGFEWADEPENANLVLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + + +V G Q +++ ++E+ G++V
Sbjct: 69 AKRKQEQPDLTLVVAGCVAQQEGEKLLRRVPELDLVMGPQHANQLESLLEQVFNGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TDPVHIME-DITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRSEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KEV L ++ AYGRD+ G +L L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGVKVEGRHLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L + AE+ P + H+P QSG + VL AM R YT +R ++D +
Sbjct: 245 HPRYFTERLIRACAEL---PKLCEHFHIPFQSGDNEVLRAMGRGYTHERYRRIIDMIRSY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+ F T+ L++E F Q++ + + PRPGTPAA S
Sbjct: 302 IPDAAISGDAIVGFPGETEAQFENTLKLVEEVGFDQLNTAAYSPRPGTPAAVWDNQLSDE 361
Query: 396 VK----KRSRELTSV--FEAFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVP 448
VK +R L ++ E YL GR+E + + + H V G T+ P
Sbjct: 362 VKSDRLQRLNHLVAIKAAERSQRYL---GRIEEVLVEDRNEKAPHQVMGRTRSNRLTFFP 418
Query: 449 STGNML-GTSALVKITSVGRWSVFGEVIKI 477
+ L G V+IT +S+ GE +++
Sbjct: 419 GEIHQLQGQLVNVRITEARAFSLTGEAVEV 448
>gi|440682816|ref|YP_007157611.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena cylindrica PCC
7122]
gi|428679935|gb|AFZ58701.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Anabaena cylindrica PCC
7122]
Length = 454
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 143/453 (31%), Positives = 222/453 (49%), Gaps = 42/453 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ +A++ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNDANVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G L+ + + +V G Q +R+ +++E G++V
Sbjct: 69 AKRKHEQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLESVFDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ + RR+ V + I GC CTYC + RG S T ++ +
Sbjct: 129 TEAMHIIE-DITQPRRDSEVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPAAIRAEMEE 187
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G LR ++
Sbjct: 188 LGKQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYVHDVP--GVERLRFATSH 245
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 246 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRRYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPGTPAA S V
Sbjct: 303 PDASISGDAIVGFPGETEAQFENTMKLVDDIGFDLLNTAAYSPRPGTPAALWDNQLSEEV 362
Query: 397 K----KRSRELTSV--FEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPS 449
K +R L +V E Y GR+E I + T+ D ++G T+G
Sbjct: 363 KSDRLQRLNHLVNVKAAERSQRYF---GRIEEILVETQNTKDKTQVMGRTRGNRLTFFNG 419
Query: 450 TGNML-GTSALVKITSVGRWSVFGEVIKILNQV 481
N L G VKIT V +S+ GE + + + V
Sbjct: 420 DINELQGKLVQVKITEVRPFSLTGEPVAVRDAV 452
>gi|414078575|ref|YP_006997893.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
gi|413971991|gb|AFW96080.1| tRNA-i(6)A37 modification enzyme MiaB [Anabaena sp. 90]
Length = 453
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 225/451 (49%), Gaps = 46/451 (10%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ +AD+ L NT + D K S
Sbjct: 8 HIITFGCQMNKADSERMAGILEDMGFEWSEDPNQADLILYNTCTIRDNAEQKVYSYLGRQ 67
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G+ L+ + + +V G Q +R+ +++E G++V
Sbjct: 68 AKRKQEEPDLTLIVAGCVAQQEGAALLRRVPELDLVMGPQHANRLKDLLESVFAGNQVVA 127
Query: 167 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ + RR+ V + I GC CTYC + RG S T E++ +
Sbjct: 128 TEEVHIFE-DITQPRRDSQVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEAVRSEIEQ 186
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G +R ++
Sbjct: 187 LARQGYKEITLLGQNIDAYGRDLPGSTPEGRHLHTLTDLLYYVHDVP--GIERIRFATSH 244
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L K A++ P V H+P QSG + +L AM+R YT +R ++DT+ +
Sbjct: 245 PRYFTERLIKACADL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRIIDTIRGYM 301
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+ F T+ L+++ F V+ + + PRPGTPAA S V
Sbjct: 302 PDASISADAIVGFPGETETQFENTLKLVEDIGFDLVNTAAYSPRPGTPAALWDNQLSEEV 361
Query: 397 K----KRSRELTSV--FEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQVLVPS 449
K +R L ++ E Y GR+E + + + D ++G T G L
Sbjct: 362 KSDRLQRLNHLVNIKAAERSQRYF---GRIEEVLVEAQNTKDTNQVMGRTGG--NRLTFF 416
Query: 450 TGN---MLGTSALVKITSVGRWSVFGEVIKI 477
TGN + G VKIT V +S+ GE +++
Sbjct: 417 TGNINELKGQIVKVKITEVRAFSLTGEAVEV 447
>gi|265983149|ref|ZP_06095884.1| RNA modification protein [Brucella sp. 83/13]
gi|306837705|ref|ZP_07470574.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
gi|264661741|gb|EEZ32002.1| RNA modification protein [Brucella sp. 83/13]
gi|306407263|gb|EFM63473.1| RNA modification enzyme, MiaB family [Brucella sp. NF 2653]
Length = 467
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 222/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRCEETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + ++ P M ++ D I GFPGETD+DF T+ L++E + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|300868939|ref|ZP_07113544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
gi|300333062|emb|CBN58736.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Oscillatoria sp. PCC 6506]
Length = 452
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 222/446 (49%), Gaps = 42/446 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ EA + L NT S D+ K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLILYNTCSIRDSAEHKVYSYLGRQ 68
Query: 117 -------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 69 AGRKRVEPELTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLEQVFDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ K RR+ K + + GC CTYC + RG S T +++ +
Sbjct: 129 TDAVHIME-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGIEQSRTPKAIRAEMEE 187
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KEV L ++ AYGRD+ G N L + + V+++P G +R ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGTKPDGSNQYTLTDLLYYVSDVP--GIERIRFATSH 245
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L K AE+ P V H+P QSG + +L AM R YT +R +++T+ + +
Sbjct: 246 PRYFTERLIKACAEL---PQVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIETIRQYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGE++ F +T+NL+ + +F V+ + + PRPGTPAA S V
Sbjct: 303 PDASISADAIVGFPGESEAQFEKTLNLVVDMRFDLVNTAAYSPRPGTPAALWDTQLSEEV 362
Query: 397 K-KRSRELTSV-----FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVP 448
K R + L V E YL GR+E + + + D ++G +G + L
Sbjct: 363 KADRLQRLNHVVTQTAMERSQRYL---GRIEEVLVEDQNQKDATQVMGRGRGNRLTFLRG 419
Query: 449 STGNMLGTSALVKITSVGRWSVFGEV 474
+ + G VKIT V +S+ G++
Sbjct: 420 NIEELRGQLVQVKITDVRAFSLTGDL 445
>gi|398814318|ref|ZP_10572999.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. BC25]
gi|398036587|gb|EJL29796.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Brevibacillus sp. BC25]
Length = 504
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 215/437 (49%), Gaps = 26/437 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
+++T+GC N+ DSE ++G L A GY +D+ E+AD+ L NT ++A D + +
Sbjct: 66 HVRTYGCQMNEHDSETISGILQAMGYTSSDSVEDADVILFNTCAIRENAEDKVFGELGHM 125
Query: 118 KK--------PLVVAGCVPQGSR----DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 163
K+ L V GC+ Q + LK + V ++ G I R+ E++ + + E
Sbjct: 126 KRLKNNNPNLILGVCGCMSQEEKVVKKILKSYQQVDLIFGTHNIHRLPELLRDAMFSKEM 185
Query: 164 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ + ++ ++PK+R + I GC CTYC + RG S E ++
Sbjct: 186 VIEVWSKEGDIVENMPKLREGNTKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVIAE 245
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
VR + G KE+ L ++ AYG+D ++ ++ E+ +R ++P
Sbjct: 246 VRDLARQGFKEIMLLGQNVNAYGKDFE-DIEYGFGDLMDEVRKIDIPRVRFTTSHPRDFD 304
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+HL E+ + + + +H+PVQSGS VL M R+Y+ + +V + + +P + ++
Sbjct: 305 DHLIEV--LAKGGNLVEQIHLPVQSGSTEVLKLMARKYSREHYLELVRKIKDAIPNVSLS 362
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFPGETDE F T+++++E K+ + + PR GTPAA M+ VP V K R
Sbjct: 363 TDIIVGFPGETDEQFEDTISMVEEVKYEFAYTFIYSPREGTPAAVMEDNVPMEVKKARLY 422
Query: 402 ELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
L V A ++ +V + + E + L G T+ V +++G
Sbjct: 423 RLNEVLARIALEQNKKLQDQVVEVLVEGESRTNAEVLAGRTRTNKLVHFTGDKSLIGQYV 482
Query: 459 LVKITSVGRWSVFGEVI 475
+KIT W++ GE++
Sbjct: 483 HIKITDAKTWTLHGELV 499
>gi|428300349|ref|YP_007138655.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
gi|428236893|gb|AFZ02683.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 6303]
Length = 454
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 222/450 (49%), Gaps = 44/450 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ EA++ L NT S D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEEMGFEWSEDPHEANLVLFNTCSIRDNAEHKVYSYLGRL 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
A++ LV+AGCV Q G L+ + + +V G Q +R+ +++++ G++V +
Sbjct: 69 ARRKHDEPDLTLVMAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLQQVFDGNQV-V 127
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
D+ K RR+ V +NV GC CTYC RG S T E++ +
Sbjct: 128 ATEAVYIMEDITKPRRDSSVTSW-VNVIYGCNERCTYCVVPGVRGVEQSRTPEAIRAEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KEV L ++ AYGRD+ G NL L + + V ++P G +R +
Sbjct: 187 ELGRQGYKEVTLLGQNIDAYGRDLPGTTPEGRNLHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L K AE+ P V H+P QSG + VL M+R YT +R ++D + E
Sbjct: 245 HPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIREY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+ F T+ L+ + F V+ + + PRP TPAA + S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDLVNTAAYSPRPNTPAALWDEQLSEE 361
Query: 396 VKK-RSRELTSVF-----EAFTPYLGMEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVP 448
+K+ R ++L + E YL GRVE I + E ++G T+G
Sbjct: 362 IKQDRLQQLNHLINVTASERSHRYL---GRVEEILVEEQNQKYANQVMGRTRGNRLTFFD 418
Query: 449 STGNML-GTSALVKITSVGRWSVFGEVIKI 477
N L G VKIT + +S+ GE +++
Sbjct: 419 GDINELRGKVVKVKITEIRAFSLTGEAVEV 448
>gi|448320337|ref|ZP_21509824.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
gi|445605802|gb|ELY59717.1| MiaB-like tRNA modifying enzyme [Natronococcus amylolyticus DSM
10524]
Length = 417
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/433 (29%), Positives = 221/433 (51%), Gaps = 39/433 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + DL I G + + E + G R+LH ++P +
Sbjct: 59 RRADELADETADL------YITGCMALAQGEEFAAADVDG---RVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TK A G + S ++E V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKRATGKIDSPSIEENVEKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+ ++ +DTG YG D G L + + +L +G +R+GM NP + +E+A V
Sbjct: 170 KELRITGQDTGVYGWDEGERKLHRLLSEICDL--EGEFRVRVGMANPKGVHGIREELATV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDHLDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + +V++++F RPGT AA MK + + K+RS+E+++
Sbjct: 288 TETDHDHAQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGTIKKERSKEMSAAKREI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V EA +G E R + + + + AD + Y Q++V + G G +++
Sbjct: 348 VGEAHASMVG-EVREDCLVVEDGTADSVKC--RDSAYRQIIVQNASDHGIEPGDFVDLEV 404
Query: 463 TSVGRWSVFGEVI 475
T+ FGE +
Sbjct: 405 TAHETMYAFGEPV 417
>gi|333923603|ref|YP_004497183.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749164|gb|AEF94271.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 459
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/450 (28%), Positives = 222/450 (49%), Gaps = 37/450 (8%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAK 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NT +T +K
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 C----------KSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE 156
K AK L+ VAGC+ Q K++ I G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 157 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 269
E+++ ++ ++A G KEV L ++ +YG+D+ ++ L + L+ I G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
+R ++P + L +I C + H+P Q+GS+ +L MNR YT + ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDIIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
D + + +PG I +DI+ GFPGET+EDF T++L++ ++ + R GTPAA+M+
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKME 364
Query: 390 KVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVL 446
+VP V R ++L + + EG+V + + E + L G ++ V+
Sbjct: 365 QVPEEVKSARIQKLIDLQNQISLENNRQEEGKVLEVLVEGETKTNPDKLAGRSRTNKLVV 424
Query: 447 VPSTGNMLGTSALVKITSVGRWSVF-GEVI 475
+ ++ G +KIT GR ++ GE++
Sbjct: 425 FDGSPDLTGQLVPIKITK-GRLNLLEGELV 453
>gi|308233434|ref|ZP_07664171.1| RNA modification enzyme, MiaB family protein [Atopobium vaginae DSM
15829]
Length = 455
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/446 (30%), Positives = 215/446 (48%), Gaps = 35/446 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQS-----------AM 107
+T +KTFGC N DSE +AG L G EEADI + T S A+
Sbjct: 10 KTYLIKTFGCQMNLHDSERVAGLLDDCGANEVATFEEADIVIFMTCSVREKADTHLYGAV 69
Query: 108 DTLIAKCKS--AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
L+ S K+ + V GC+ Q G++ + + V +V G + V E++ E + +
Sbjct: 70 SNLVTLPPSPCGKRVIAVGGCIAQRDGAKLREHVPNVDVVFGTSALASVPELLCEAFESN 129
Query: 163 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
+ V + + + + DLP R F +PI GC CT+C + RG S +E
Sbjct: 130 DDEVFVDTIEKNRGFSTDLPSKRDQSFHAWVPIMTGCNNFCTFCIVPYVRGRERSRVLER 189
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V VR + DGV+EV L ++ +YGRD+ P ++ ++ G +R +NP
Sbjct: 190 VVDEVRRLKDDGVREVTLLGQNVNSYGRDL-YKKPCFAE-LLRKVGEVGIERIRFTSSNP 247
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + IA + P V LH+ VQSGS +L AM+R YT + V+D L +P
Sbjct: 248 KDLSD--ETIAAMAETPAVMPQLHLAVQSGSTRILKAMHRSYTREKYLEVIDHLKSAMPD 305
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVK 397
+ ++TDII GFPGET+EDF +T++L++E ++ + RPGTPAA ++ P V++
Sbjct: 306 IALSTDIIVGFPGETEEDFEETLSLVREVEYSSAFTFIYSKRPGTPAANIEDTTPHEVIQ 365
Query: 398 KRSRELTSVFEAFTPYLGMEGRVERIWITEIAA----DGIHLVGHTKGYVQVLV-----P 448
+R LT + E Y + + + + + D LVGH+ VL
Sbjct: 366 QRFNRLTDLIEELA-YKANQKELHTLVTSLVEGTSKKDSHVLVGHSPKNQTVLFSLPKDA 424
Query: 449 STGNMLGTSALVKITSVGRWSVFGEV 474
S + +G V + W + G++
Sbjct: 425 SAQDYIGKMCEVYVEEAKTWYLRGKL 450
>gi|406909104|gb|EKD49432.1| hypothetical protein ACD_63C00147G0003 [uncultured bacterium]
Length = 427
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 212/428 (49%), Gaps = 25/428 (5%)
Query: 62 YMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
Y+KT+GC N+SDSE +A L + G+ + E+D+ ++NT QSA + + K KS
Sbjct: 4 YIKTYGCQMNKSDSERVAQVLENQCGFKPAGSEAESDLVVLNTCTVRQSAENRAVGKVKS 63
Query: 117 -AKKPLVVAGCVPQGSRDLKELEGVSIV-----GVQQIDRVVEVVEETLKGHEVRLLHRK 170
+ K +++ GC+ + K+ + ++ + ++ +E G + L H K
Sbjct: 64 LSNKKIILTGCLARQKDFYKKFPEIDLLLDIKDLSKLPKKLKSSKQELNDG--ISLCHEK 121
Query: 171 KLP-ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
+ L + + F +PI+ GC C YC + RG S E ++ + +I
Sbjct: 122 RQKNYLSITPKYESSFSAYIPISTGCDNYCAYCVVPYVRGPETSRKAEEILAEAKDLIKK 181
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
KE+ L ++ +Y +D + LL I +G+ + ++P E L ++
Sbjct: 182 DYKEITLVGQNVNSY-KDGKTDFTKLLKKIARY---EGNFRIFFITSHPKDFDEKLIDV- 236
Query: 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V +HP + + H+P QSGS+ +L MNR+Y+ D+ ++ + + +P I+TD+I GF
Sbjct: 237 -VKKHPKLCRYFHIPFQSGSNKILEKMNRKYSREDYLQIISQIRKEIPDAAISTDVIVGF 295
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFE 408
P ET+++F +T NL++E KF +I+Q+ PRP T A ++K VP K+R LT++ +
Sbjct: 296 PEETNKEFGETANLMREVKFDMAYIAQYSPRPQTEAFKLKDSVPKTEKKRREAFLTNILK 355
Query: 409 AFTPYLGME--GRVERIWITEIA--ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+ + G+ R+ + I + L G T Y V+ S N++G VKI
Sbjct: 356 KTSLKKNKKLIGKTVRVLVNNIKPEKNKFKLSGKTDNYKTVVFGSDKNLIGEFVNVKIID 415
Query: 465 VGRWSVFG 472
W V G
Sbjct: 416 AMAWGVRG 423
>gi|126652827|ref|ZP_01724972.1| Fe-S oxidoreductase [Bacillus sp. B14905]
gi|126590363|gb|EAZ84483.1| Fe-S oxidoreductase [Bacillus sp. B14905]
Length = 449
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 221/449 (49%), Gaps = 31/449 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA 117
++ + T GC N ++E + GY T+ ++AD+++INT + +T K +
Sbjct: 6 SKIVSFHTLGCKVNHYETEAIWQLFKDEGYDRTEFDQQADVYVINTCTVTNTGDKKSRQV 65
Query: 118 KKPLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--- 163
+ + V GC Q S ++ + GV IV G Q +++ +++ +
Sbjct: 66 IRRAIRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRTKLLGYIDQYRAERQPIN 125
Query: 164 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
VR ++ + LD+P ++ L I GC CT+C ARG + S + ++
Sbjct: 126 AVRNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPQEVLH 184
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+ + ++ G E+ L+ TG YG+D+ NL LL + A + G LRI
Sbjct: 185 QAQQLVDAGYLEIVLTGIHTGGYGQDLKDYNLAQLLRDLEANVK--GLKRLRISSIEASQ 242
Query: 281 ILEHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + E+ +VLR V + LH+P+QSGSD VL M R+YT+ F + L E +P +
Sbjct: 243 LTD---EVIDVLRESKIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFGERLTKLHEALPDL 299
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
+ +D+I GFPGET+E+F T N I+++KF ++H+ F PR GTPAARM+ ++ + +
Sbjct: 300 AVTSDVIVGFPGETEEEFMDTYNFIRDHKFSELHVFPFSPRTGTPAARMEDQIDEDIKNE 359
Query: 399 RSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGN 452
R L S+ + E +V + E DG L G+T Y++V+ +
Sbjct: 360 RVHRLISLNDQLAKEYASRFEDQVLEVIPEEFVHDGSEEEGLLTGYTDNYLKVVFEGPES 419
Query: 453 MLGTSALVKITSVGRWSVFGEVIKILNQV 481
++G VKIT G G+ +++L V
Sbjct: 420 LIGQLVKVKITQAGYPHSQGQFVRVLETV 448
>gi|296132994|ref|YP_003640241.1| MiaB family RNA modification protein [Thermincola potens JR]
gi|296031572|gb|ADG82340.1| RNA modification enzyme, MiaB family [Thermincola potens JR]
Length = 449
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 135/457 (29%), Positives = 211/457 (46%), Gaps = 61/457 (13%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------I 111
+ +++TFGC N+ DSE MAG L GY N+E+ADI ++NT + +T I
Sbjct: 9 QKYFLQTFGCQMNERDSETMAGLLEGMGYEPVANAEDADIIILNTCTVRETAENKVWGRI 68
Query: 112 AKCKS--AKKPLVV---AGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG 161
+ K+ +KKP V+ GC+ Q +++ + I G I + E++
Sbjct: 69 GELKALKSKKPDVIIGICGCMAQQKETAEKIRRKAPHIELIFGTHNIHELPEMIN----- 123
Query: 162 HEVRLLHRKKLPALD-----------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 210
RL+ +K P L+ LP R++K + I GC CTYC + RG
Sbjct: 124 ---RLVAERK-PLLNVWNAEGSIVENLPARRKSKVKAFVSIMFGCNNFCTYCIVPYVRGR 179
Query: 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPP 265
S + +V V+++ G KEV L ++ +YG+D+ +L +LN I
Sbjct: 180 ERSRQIADIVREVKSLAEQGYKEVTLLGQNVNSYGKDLPEKTDFSDLLEVLNEI------ 233
Query: 266 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 325
DG +R ++P L ++ + R V H+PVQSGS+++L MNR YT +
Sbjct: 234 DGIRRIRYMTSHPRDFTSKLIDV--IARSEKVCEHFHLPVQSGSNSILKKMNRGYTREYY 291
Query: 326 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385
+V + +P I TDII GFPGET +DF T++L+ + ++ + R GTPA
Sbjct: 292 FELVAEIRSKIPHASITTDIIVGFPGETRQDFENTMDLLDKVRYDSAFTFVYNKRSGTPA 351
Query: 386 ARM-KKVPSAVVKKRSRELTSVFEAFTPYLGME------GRVERIWITEIAADGIHLVGH 438
A M +VP KR EL F + +E GR + + +
Sbjct: 352 ASMTDQVPDEEKSKRIVELIE----FQNKISLEKNLCEVGREHEVLAEGLKNSQNKVEAR 407
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
T+ VL+ NM+G VKI G W + GE++
Sbjct: 408 TRTNKLVLLNGDSNMIGNMYRVKIVKAGPWHLDGEIL 444
>gi|398307002|ref|ZP_10510588.1| hypothetical protein BvalD_16567 [Bacillus vallismortis DV1-F-3]
Length = 451
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 223/458 (48%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERRDFEQTADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYREERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIKQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ + LL + + +G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYSFAKLLRELDTRV--EGVKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + + LH+P+QSGS+ VL M R+YT+ F + L + +PG+ +
Sbjct: 240 D---EVIEVLDRSNKIVNHLHIPIQSGSNTVLKRMRRKYTMEFFADRLHKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE++F ++H+ + R GTPAARM+ +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHQFSELHVFPYSKRTGTPAARMEGQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH-----LVGHTKGYVQVLVPSTGNMLG 455
L S+ + + E + I A VG+T Y++V+ T M+G
Sbjct: 357 HRLISLSDQLAKEYASQYENEVLEIIPEEAYKETEEENMFVGYTDNYMKVVFKGTEEMIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ V+D+I + R+SS
Sbjct: 417 KIVKVKILKAGYPYNEGQFVRV---VEDEITEHMRLSS 451
>gi|148241703|ref|YP_001226860.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Synechococcus
sp. RCC307]
gi|229891031|sp|A5GRJ8.1|MIAB_SYNR3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|147850013|emb|CAK27507.1| 2-methylthioadenine synthetase [Synechococcus sp. RCC307]
Length = 453
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 206/439 (46%), Gaps = 29/439 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC----- 114
T ++ TFGC N++DSE MAG L + GY ++AD+ L NT + D K
Sbjct: 8 TYWITTFGCQMNKADSERMAGILESMGYCAGSGEDQADLVLYNTCTIRDNAEQKVYSYLG 67
Query: 115 KSAKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
+ A++ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 68 RQARRKRDNPALTLVVAGCVAQQEGESLLRRVPELDLVMGPQHANRLDTLLSQVEAGQQV 127
Query: 165 RLLHRKKLPALDLPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ D+ RR+ + + GC CTYC RG S +++ +
Sbjct: 128 VATDDHHILE-DITTARRDSSLCAWVNVIYGCNERCTYCVVPSVRGQEQSRLPQAIRLEM 186
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTN 277
+ A G KE+ L ++ AYGRD+ G L + + G +R ++
Sbjct: 187 EGLAASGYKEITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHVHDVKGIERIRFATSH 246
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + E L E L P V HVP QSG D +L AM R YT + +R +V+ + +L+P
Sbjct: 247 PRYFTERLIEACAEL--PKVCEHFHVPFQSGDDELLKAMARGYTTARYRRIVEQIRKLMP 304
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 396
I+ D I GFPGETD F +T+ L+ E F ++ + + PRP TPAA +V V
Sbjct: 305 DAAISADAIVGFPGETDAQFRRTLELVDEIGFDLLNTAAYSPRPNTPAADWPDQVEEHVK 364
Query: 397 KKRSRELTSVFEAFTPYLGME--GRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGNM 453
+R +EL ++ E GRVE + I D L+G T+ P+ +
Sbjct: 365 VERLKELNALVERKAKACSQRYLGRVEEVLAEGINPKDNTQLMGRTRTNRLTFFPAGSHR 424
Query: 454 LGTSALVKITSVGRWSVFG 472
+G + V+I V +S+ G
Sbjct: 425 VGDTVPVRIEQVRAFSLSG 443
>gi|22298858|ref|NP_682105.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Thermosynechococcus elongatus BP-1]
gi|81743104|sp|Q8DJB2.1|MIAB_THEEB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22295039|dbj|BAC08867.1| tlr1315 [Thermosynechococcus elongatus BP-1]
Length = 450
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 211/443 (47%), Gaps = 40/443 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
Y+ TFGC N++DSE MAG L A G L +EAD+ L NT + D K S
Sbjct: 6 YITTFGCQMNKADSERMAGILEAMGLELAAEPDEADVLLYNTCTIRDNAEQKLYSYLGRQ 65
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G + L+ + V +V G Q +R+ E++E+ G +V
Sbjct: 66 AKRKHQDPNLTLIVAGCVAQQEGEQLLRRVPEVDLVMGPQYANRLGELLEQVWNGSQVVA 125
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ D+ K RR+ V +NV GC CTYC RG S E++ +
Sbjct: 126 TEPLQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPGVRGQEQSRRPEAIRAEIE 183
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ A G KEV L ++ AYGRD+ G + + G +R ++P
Sbjct: 184 ELAAQGYKEVTLLGQNIDAYGRDLPGITPEGRRQHTFTDLLYYIHDVAGIERIRFATSHP 243
Query: 279 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ E L + AE+ P V H+P QSG + +L AM R YT + +++T+ +P
Sbjct: 244 RYFTERLIRACAEL---PKVCKHFHIPFQSGDNEILKAMARGYTRERYLHIIETIRRYMP 300
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
I+ D I GFPGET+E F +T++L+ F Q++ + + PRP TPAA + +VP A+
Sbjct: 301 DAAISADAIVGFPGETEEQFQRTLDLVAAVGFDQLNTAAYSPRPNTPAATWENQVPEAIK 360
Query: 397 KKRSRELTSVFEAFT-----PYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST 450
+ R + L + YLG E E + + + D + G T G +P
Sbjct: 361 EDRLQRLNHLVAKIAGDRSQRYLGRE---EVVLVEGVNPKDAQQVYGRTDGNRLTYLPGD 417
Query: 451 GNML-GTSALVKITSVGRWSVFG 472
L G V+IT +S+ G
Sbjct: 418 IETLRGQLVRVRITEARAFSLSG 440
>gi|448424292|ref|ZP_21582342.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
gi|445682285|gb|ELZ34704.1| MiaB-like tRNA modifying enzyme [Halorubrum terrestre JCM 10247]
Length = 441
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/435 (31%), Positives = 214/435 (49%), Gaps = 38/435 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D E+AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPEDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 171
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLGDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V EA+ +G E + + E D + Y Q++V + G +G V+
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVE 402
Query: 462 ITSVGRWSVFGEVIK 476
+T FG+ ++
Sbjct: 403 VTGHNTVYAFGDPVE 417
>gi|166367538|ref|YP_001659811.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Microcystis
aeruginosa NIES-843]
gi|425440422|ref|ZP_18820724.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|425463534|ref|ZP_18842864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
gi|229890619|sp|B0JVM6.1|MIAB_MICAN RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|166089911|dbj|BAG04619.1| tRNA-i(6)A37 modification enzyme [Microcystis aeruginosa NIES-843]
gi|389719125|emb|CCH96984.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9717]
gi|389831547|emb|CCI25631.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9809]
Length = 446
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 140/447 (31%), Positives = 217/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLIVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + +L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRDLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAIWDDQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
+ + G VKIT V +S+ G +
Sbjct: 420 DIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|52081091|ref|YP_079882.1| hypothetical protein BL02101 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319644951|ref|ZP_07999184.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
gi|404489973|ref|YP_006714079.1| tRNA methylthiotransferase YqeV [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423683069|ref|ZP_17657908.1| hypothetical protein MUY_02922 [Bacillus licheniformis WX-02]
gi|52004302|gb|AAU24244.1| conserved hypothetical protein [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52348972|gb|AAU41606.1| tRNA methylthiotransferase YqeV [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317392760|gb|EFV73554.1| hypothetical protein HMPREF1012_00217 [Bacillus sp. BT1B_CT2]
gi|383439843|gb|EID47618.1| hypothetical protein MUY_02922 [Bacillus licheniformis WX-02]
Length = 451
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/458 (29%), Positives = 224/458 (48%), Gaps = 33/458 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEAGYERKEFESSADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q ++++ +++ + +
Sbjct: 63 RAIRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIKQYQEERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 123 SNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + + G +RI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGEDMKDYNFAQLLKELDSRVK--GLKRIRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ EVL R + LH+P+QSGS++VL M R+YT+ F + L + +PG+ +
Sbjct: 240 D---EVIEVLDRSDKIVRHLHIPLQSGSNSVLKRMRRKYTMEFFADRLTKLKKALPGLAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+D+I GFPGET+E+F +T N IKE+KF ++H+ + R GTPAARM +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYNFIKEHKFSELHVFPYSKRTGTPAARMDGQVDENVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITE---IAADGIHLVGHTKGYVQVLVPSTGNMLG 455
+L ++ + EG V I E +G LVG+T Y++V+ + +++G
Sbjct: 357 HKLIALSDQLAKEYASDYEGDVLEIIPEEPFTETGEGNLLVGYTDNYIKVVFEGSEDLIG 416
Query: 456 TSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
VKI G G+ +++ +D + N R+SS
Sbjct: 417 QLVKVKILKAGYPYNKGQFVRV---AEDDVRENIRLSS 451
>gi|331001788|ref|ZP_08325310.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330412762|gb|EGG92145.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 475
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/365 (31%), Positives = 191/365 (52%), Gaps = 28/365 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------IAKC 114
TFGC N DSE ++G LS GY +N E+AD+ L NT ++A D L + K
Sbjct: 41 TFGCQMNARDSEKLSGILSGIGYTEAENEEDADLVLFNTCTVRENANDRLYGRVGQLKKS 100
Query: 115 KSAKKPLVVA--GCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 165
K ++V GC+ Q + ++++++ + G I ++ E++ + T K +
Sbjct: 101 KEKNHDMIVGICGCMMQEAEEVEKIKKSYRHVDLVFGTHNIYKLAEILFDHLTTKKQIIN 160
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
++ + LP R+ F + I GC C+YC + RG S E ++ ++T
Sbjct: 161 VMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYCIVPYVRGRERSRKPEEIIDEIKT 220
Query: 226 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ADGVKE+ L ++ +YGR + ++ LL I AE+ +G LR +P + +
Sbjct: 221 LVADGVKEIMLLGQNVNSYGRGLEEEISFAGLLERI-AEI--EGLERLRFMTPHPKDLSD 277
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
+ E+ + + C + LH+P+QSGS A+L MNR YT D+ +V + +P + + T
Sbjct: 278 EVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVYTKEDYLNLVKRIKTAIPDISLTT 335
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV--PSAVVKKRSR 401
DII GFPGET+ DF T+ ++KE ++ + R GTPAA+M++ P A+ + R
Sbjct: 336 DIIVGFPGETEGDFLDTLEVVKEVRYDSAFTFIYSKRSGTPAAKMEEQVDPKAIKDRFDR 395
Query: 402 ELTSV 406
L +V
Sbjct: 396 LLKTV 400
>gi|406664478|ref|ZP_11072253.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
gi|405387326|gb|EKB46750.1| (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
isronensis B3W22]
Length = 449
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 129/445 (28%), Positives = 223/445 (50%), Gaps = 30/445 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA 117
T+T+ + T GC N ++E + GY T+ +AD+++INT + +T K +
Sbjct: 6 TKTVSLHTLGCKVNHYETEAIWQLFKEQGYERTEFDHQADVYVINTCTVTNTGDKKSRQV 65
Query: 118 KKPLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--- 163
+ + V GC Q S ++ + GV IV G Q ++++ +++ +
Sbjct: 66 IRRAIRQNPDAVICVTGCYAQTSPAEIMAIPGVDIVVGTQDREKMLGYIDQYRNERQPIN 125
Query: 164 -VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
VR ++ + LD+P ++ L I GC CT+C ARG + S E ++
Sbjct: 126 AVRNIMKNRVYEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEEVIR 184
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
+ + ++ G E+ L+ TG YG+D NL LL + A++ G LRI
Sbjct: 185 QAQQLVDAGYLEIVLTGIHTGGYGQDFKDYNLAQLLRDLEAQVK--GLKRLRISSIEASQ 242
Query: 281 ILEHLKEIAEVLRHP-CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + E+ +VL++ V + LH+P+QSGSD VL M R+YT+ F ++ L +P +
Sbjct: 243 LTD---EVIDVLQNSEIVVNHLHIPIQSGSDTVLKRMRRKYTMEFFAERLEKLKIALPDL 299
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
+ +D+I GFPGET+E+F +T N I+++KF ++H+ + R GTPAARM+ +V + +
Sbjct: 300 AVTSDVIVGFPGETEEEFMETYNFIRDHKFSELHVFPYSQRTGTPAARMEDQVDEEIKNE 359
Query: 399 RSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGNM 453
R L ++ + EG V + E D + VG+T Y++V+ T M
Sbjct: 360 RVHRLIALNDQLAKEYASRFEGEVLEVIPEERFKDSDNENLYVGYTTNYLKVIFEGTEEM 419
Query: 454 LGTSALVKITSVGRWSVFGEVIKIL 478
+G VK+T G G+ +++L
Sbjct: 420 VGQLVKVKVTKAGYPYNEGQFVRVL 444
>gi|384566957|ref|ZP_10014061.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora glauca K62]
gi|384522811|gb|EIF00007.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Saccharomonospora glauca K62]
Length = 498
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 128/372 (34%), Positives = 191/372 (51%), Gaps = 31/372 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL--- 110
T T ++TFGC N DSE +AGQL GYAL + EE D+ ++NT ++A + L
Sbjct: 2 TRTYAIRTFGCQMNVHDSERLAGQLEDAGYALAADGEEPDVVVLNTCAVRENADNKLYGH 61
Query: 111 IAKCKSAK--KP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+ ++AK KP + V GC+ Q R +K V +V G I + ++E
Sbjct: 62 LGHLRAAKTAKPGMQIAVGGCLAQKDRGEIVKRAPWVDVVFGTHNIASLPVLLERARHNA 121
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E V +L + LP R + + + I+VGC CT+C RG ++
Sbjct: 122 EAQVEILEALETFPSTLPARRESAYSGWVSISVGCNNTCTFCIVPSLRGKERDRRPGEIL 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST--MLRIGMTNP 278
V ++A+GV EV L ++ +YG + G +A L GS + R+ T+P
Sbjct: 182 AEVEALVAEGVLEVTLLGQNVNSYGVEFGDR-----HAFGKLLRACGSVEGLERVRFTSP 236
Query: 279 ---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
F + ++ +AE P V LH+P+QSGSD VL AM R Y + F +++ + E
Sbjct: 237 HPAAFTDDVIEAMAET---PNVCHQLHMPLQSGSDRVLKAMRRSYRSTRFLGILERVREA 293
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 394
+P I TDII GFPGET+EDF QT+ +++E +F Q+ PRPGTPAA M +VP
Sbjct: 294 MPDAAITTDIIVGFPGETEEDFEQTLEVVREARFSSAFTFQYSPRPGTPAAEMPDQVPKE 353
Query: 395 VVKKRSRELTSV 406
VV++R L +
Sbjct: 354 VVQERYDRLVEL 365
>gi|333370927|ref|ZP_08462897.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
gi|332976877|gb|EGK13699.1| tRNA-I(6)A37 modification enzyme MiaB [Desmospora sp. 8437]
Length = 495
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 220/437 (50%), Gaps = 26/437 (5%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAKCK 115
+KT+GC N DSE +AG L GY T+ EEA + LINT ++A D + I + K
Sbjct: 53 IKTYGCQMNVHDSETIAGILELMGYRPTEVEEEAAVILINTCAIRENAEDKVFGEIGRLK 112
Query: 116 SAK--KPLVV---AGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
+ K KP +V GC+ Q +R L++ + V ++ G I R+ ++ E L E
Sbjct: 113 TLKTEKPELVLGMCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPHLLREALMSKEMV 172
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ +LPKVR + + I GC CTYC + RG S E ++ +
Sbjct: 173 VEVWSKEGDIVENLPKVREDGLKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDVLAEI 232
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + G +EV L ++ AYG+D + ++ ++ G +R ++P +
Sbjct: 233 RDLARKGYREVTLLGQNVNAYGKDFE-DRDYRFGDLMEDVRKIGIPRVRFTTSHPRDFDD 291
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HL E+ + R + +H+P QSG++A+L M R+YT F +V + +P + + T
Sbjct: 292 HLIEV--LARRGNLVEHIHLPAQSGNNAILKIMARKYTRERFLELVAKIKAAIPDVVLTT 349
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII G+PGET+E F T++L++E +F + PR GTPAA+MK VP V K+R
Sbjct: 350 DIIVGYPGETEEQFEDTLSLMREVEFDSAFTFIYSPREGTPAAKMKDDVPMNVKKERLYR 409
Query: 403 LTSVFEAFT--PYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L + + + L ++ +V + + E D L G T+ V +++G A
Sbjct: 410 LNHLQDEISRKKNLALKDQVVEVLVEGESKKDPNVLSGRTRTNKLVNFQGPKHLIGEFAQ 469
Query: 460 VKITSVGRWSVFGEVIK 476
V+IT W++ GE ++
Sbjct: 470 VRITEPRTWTLKGEWVE 486
>gi|124023692|ref|YP_001017999.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Prochlorococcus marinus str. MIT 9303]
gi|229890600|sp|A2CB74.1|MIAB_PROM3 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123963978|gb|ABM78734.1| 2-methylthioadenine synthetase [Prochlorococcus marinus str. MIT
9303]
Length = 480
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/413 (32%), Positives = 205/413 (49%), Gaps = 41/413 (9%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
+ +++TFGC N++DSE MAG L A GY EAD+ L NT + D K S
Sbjct: 30 SFWIQTFGCQMNKADSERMAGILEAMGYHEAPAELEADLVLYNTCTIRDNAEQKVYSYLG 89
Query: 117 --AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
A++ LVVAGCV Q G L+ + + +V G Q +R+ ++ + G +V
Sbjct: 90 RQARRKRTHPHLKLVVAGCVAQQEGEALLRRIPELDLVMGPQHANRLEALLTQVDNGQQV 149
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ DL RR+ + +NV GC CTYC RG S + E++
Sbjct: 150 VATDDNHILE-DLTTARRDSTI-CAWVNVIYGCNERCTYCVVPSVRGKEQSRSPEAIRLE 207
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMT 276
+ + A G +E+ L ++ AYGRD+ G L + + +G +R +
Sbjct: 208 IEGLAARGFREITLLGQNIDAYGRDLPGITPEGRRQNTLTDLLHHIHDVEGIERIRFATS 267
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L E L P V H+P QSG + VL AM R YT+ +R +V+ + EL+
Sbjct: 268 HPRYFTERLIEACFDL--PKVCEHFHIPFQSGDNDVLKAMARGYTVERYRRIVNRIRELM 325
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAV 395
P I+TD+I FPGETD F T+NL++E F QV+ + + PRP TPAA ++P V
Sbjct: 326 PDAAISTDVIVAFPGETDAQFQNTLNLVEEVGFDQVNTAAYSPRPNTPAATWSNQLPEVV 385
Query: 396 VKKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIH------LVGHTK 440
+R ++L ++ E A G+VE ++ A+GI+ L+G T+
Sbjct: 386 KVERLKQLNALVERVALQRNSRYSGKVE-----QVLAEGINPKKPQQLMGRTR 433
>gi|163852619|ref|YP_001640662.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens PA1]
gi|229890613|sp|A9VYZ9.1|MIAB_METEP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|163664224|gb|ABY31591.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
PA1]
Length = 446
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 134/444 (30%), Positives = 208/444 (46%), Gaps = 37/444 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA---- 117
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NT + K S
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 118 ------------KKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGHDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 163 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
+V R ++ GV+E+ L ++ AY + P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGNGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 396
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 397 KKRSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + + A+ G + I + + + G T V + +
Sbjct: 359 TERLAALQDLLDRQRHAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 416
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
+GT V+IT G S+FGE ++
Sbjct: 417 TIGTVVPVRITRAGSNSLFGETLE 440
>gi|384265286|ref|YP_005420993.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387898282|ref|YP_006328578.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
gi|380498639|emb|CCG49677.1| (Dimethylallyl)adenosine tRNA methylthiotransferase ymcB [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|387172392|gb|AFJ61853.1| tRNA-i(6)A37 methylthiotransferase [Bacillus amyloliquefaciens Y2]
Length = 509
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/435 (30%), Positives = 215/435 (49%), Gaps = 26/435 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKALKKNNPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRNGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DMTYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS A+L M R+Y + +V + +P +
Sbjct: 307 DDRLIEV--LAKGGNLLDHIHLPVQSGSSAMLKMMARKYDRERYLELVGKIKAAMPNASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + + + EGR + + E + L G+T+ V + +G
Sbjct: 425 QRLNDLVKEISAKKMKEYEGRTVEVLVEGESKNNPDILAGYTEKSKLVNFKGPKDAIGKI 484
Query: 458 ALVKITSVGRWSVFG 472
VKI WS+ G
Sbjct: 485 VRVKIEQAKTWSLDG 499
>gi|312135300|ref|YP_004002638.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
owensensis OL]
gi|311775351|gb|ADQ04838.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
owensensis OL]
Length = 471
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 205/435 (47%), Gaps = 29/435 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------IAKC 114
T+GC N DSE +AG L+A GY T+N +EAD+ + NT S + + +
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 115 KSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEE--TLKGHEVR 165
K K L+ V GC+PQ ++L + I G + + + +++ T K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQLEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAITEKRTVID 161
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ + + +P R+ + I GC C+YC + RG S E ++ +
Sbjct: 162 VSENEDVVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIIYEIEQ 221
Query: 226 VIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ +GVKEV L ++ +YG+D+ G+ P LL I E+ G +R ++P +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLVNGITFPKLLEKI-NEIK--GIERIRFVTSHPKDLSN 278
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L L C +H+PVQSGS +L AMNR YT D+ +V+ L +P + I T
Sbjct: 279 ELIAAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLVEKLKTNIPDIAITT 336
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
DII GFPGETDEDF T+++ K+ +F + + R GTPA +M +VP + +R +
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCKKVEFDSAYTFIYSKRRGTPAEKMPNQVPDNIKHQRFQR 396
Query: 403 LTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L + E A M G+ I I + LVG T+ V V + V
Sbjct: 397 LVKLVEEIALKKNKQMLGKTYEILIDGRSKRNNLLVGRTRTNKVVNVKCPEEYMFKFVNV 456
Query: 461 KITSVGRWSVFGEVI 475
KI ++GEVI
Sbjct: 457 KILEAAEHWLYGEVI 471
>gi|158337776|ref|YP_001518952.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Acaryochloris
marina MBIC11017]
gi|229890405|sp|B0C0E2.1|MIAB_ACAM1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|158308017|gb|ABW29634.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Acaryochloris marina
MBIC11017]
Length = 454
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 215/443 (48%), Gaps = 38/443 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ T+GC N++DSE MAG L GY ++N ++A++ L NT + D K S
Sbjct: 9 HITTYGCQMNKADSERMAGVLENMGYQWSENPDDANLILCNTCTIRDNAEHKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q D L+ + + +V G Q +R+ +++E+ G +V L
Sbjct: 69 AKRKHAQPDLTLVVAGCVAQQEGDALLRRVPELDLVMGPQHANRLQDLLEQVASGQQV-L 127
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 128 ATEPIHIVEDITKPRRDSAVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMV 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KEV L ++ AYGRD+ G + L + + V ++P G +R +
Sbjct: 187 QLGEQGFKEVTLLGQNIDAYGRDLPGTTSEGRHQHTLTDLLYFVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L I P V H+P QSG + VL AM+R YT +R ++D + ++
Sbjct: 245 HPRYFTERL--IQACYELPKVCEHFHIPFQSGDNDVLKAMSRGYTHEKYRRIIDNIRAIM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+E F T+ L+++ +F ++ + + PRPGTPAA S V
Sbjct: 303 PDASISADAIVGFPGETEEQFMNTMQLVEDIEFDLLNTAAYSPRPGTPAALWDNQLSEEV 362
Query: 397 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
K +R L V R+E + + + D ++G T+G P
Sbjct: 363 KADRLQRLNRLVGVCAELRSQ-RYANRIEEVLVEDQNPKDPTQVMGRTRGNRLTFFPGNI 421
Query: 452 NML-GTSALVKITSVGRWSVFGE 473
L G VK+T V +S+ GE
Sbjct: 422 EQLRGEIIAVKVTEVRSFSLTGE 444
>gi|455641583|gb|EMF20754.1| tRNA-i(6)A37 methylthiotransferase [Citrobacter freundii GTC 09479]
Length = 476
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 228/462 (49%), Gaps = 39/462 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTL------ 110
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NT S +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 111 ------IAKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+ K K+ K + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 120
Query: 162 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 121 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 180
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 271
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 181 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 236
Query: 272 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
R ++P +E +I EV R P + SFLH+PVQSGSD VL+ M R +T +++ ++
Sbjct: 237 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 293
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 389
L + P +QI++D I GFPGET +DF QT+ LI + F + F RPGTPAA M
Sbjct: 294 KLRDARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 353
Query: 390 KVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVL 446
VP K+R L +A M G +RI + + I L G T+ V
Sbjct: 354 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 413
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN 488
T +M+G V+IT V S+ G+V++ +++ +IA +
Sbjct: 414 FEGTPDMVGKFVDVEITDVWTNSLRGKVVRTEDEMGLRIAES 455
>gi|306843571|ref|ZP_07476172.1| RNA modification enzyme, MiaB family [Brucella inopinata BO1]
gi|306276262|gb|EFM57962.1| RNA modification enzyme, MiaB family [Brucella inopinata BO1]
Length = 467
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 222/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPRA-NTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + ++ P M ++ D I GFPGETD+DF T+ L++E + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMRLVREVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|453052257|gb|EME99743.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
mobaraensis NBRC 13819 = DSM 40847]
Length = 507
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/378 (32%), Positives = 189/378 (50%), Gaps = 24/378 (6%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINT----Q 104
S +P T+T ++T+GC N DSE ++G L GY +N+ E AD+ + NT +
Sbjct: 7 SHDVPSTKTYLIRTYGCQMNVHDSERLSGLLEDAGYVRAPENTTEGDADVVVFNTCAVRE 66
Query: 105 SAMDTLIA--------KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVE 153
+A + L K + + V GC+ Q RD +K+ V +V G I ++
Sbjct: 67 NADNKLYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPV 126
Query: 154 VVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHL 211
++E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LLERARIQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKE 186
Query: 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 271
++ V ++A+GV E+ L ++ AYG DIG + + A +G +
Sbjct: 187 KDRRPGDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGKIEGLERV 245
Query: 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
R +P + + IA + P V LH+P+QSGSD VL AM R Y F ++D
Sbjct: 246 RFTSPHPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLKAMRRSYRQERFLGIIDK 303
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K 390
+ +P I+TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M +
Sbjct: 304 VRAAMPDAAISTDIIVGFPGETEEDFEQTMHVVREARFAQAFTFQYSKRPGTPAATMDGQ 363
Query: 391 VPSAVVKKRSRELTSVFE 408
+P VV+ R L + E
Sbjct: 364 IPKEVVQARYERLVELQE 381
>gi|67922391|ref|ZP_00515902.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
gi|67855735|gb|EAM50983.1| Protein of unknown function UPF0004:tRNA-i(6)A37 modification
enzyme MiaB [Crocosphaera watsonii WH 8501]
Length = 452
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 217/445 (48%), Gaps = 38/445 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ + + AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFKWSQDPNGADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 ----AKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
K P LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 69 AKRKHKNPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLEDLLTQVFDGNQVIA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ K RR+ V + I GC C+YC RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNEKCSYCVVPSVRGVEQSRTPEAIYAEMEL 187
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KEV L ++ AYGRD+ G + L + + V ++P G LR ++
Sbjct: 188 LAKQGYKEVTLLGQNIDAYGRDLPGVTASGRHKHTLTDLLYQVHDIP--GIERLRFATSH 245
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + E L + + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 246 PRYFTERLIKACDEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHQKYRKIIDKIREYMP 303
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
I+ D I GFP ET+E F T+ L+ + F Q++ + + PRPGTPAA ++ S VK
Sbjct: 304 DASISADAIVGFPEETEEQFENTLKLVDDIGFDQLNTAAYSPRPGTPAALWEQQLSEEVK 363
Query: 398 K-RSRELTSVF--EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTGN- 452
R + L + +A GR+E + + + D ++G T+G L GN
Sbjct: 364 SDRLQRLNHLVAQKAAQRSQRYLGRIEEVLVEDQNPKDNSQVMGRTQG--NRLTFCKGNI 421
Query: 453 --MLGTSALVKITSVGRWSVFGEVI 475
+ G V+IT V +S+ GE I
Sbjct: 422 DELKGQLIKVEITEVRAFSLTGEAI 446
>gi|51892897|ref|YP_075588.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
14863]
gi|81388796|sp|Q67NJ9.1|MIAB_SYMTH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|51856586|dbj|BAD40744.1| 2-methylthioadenine synthetase [Symbiobacterium thermophilum IAM
14863]
Length = 470
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 132/451 (29%), Positives = 209/451 (46%), Gaps = 43/451 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKS 116
++++TFGC N+ DSE M G L+ GY ++AD+ L NT +SA++ +
Sbjct: 22 VHIETFGCQMNEHDSEIMYGILAQMGYVKAQGPDDADLLLFNTCAVRESAVEHAFGRIGQ 81
Query: 117 AKKPLV---------VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGH 162
K PL V GCVPQ ++ ++ + I G I R+ E+VE
Sbjct: 82 LK-PLKYTNPDLIIGVCGCVPQVEGQVERIKRMFPYLDLIFGTHNIHRLPELVERARSER 140
Query: 163 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E V P + LP R + I GC CTYC RG S E
Sbjct: 141 ETVVDVWESMGDDFPDI-LPAAREGDLKAWVTIMYGCDKHCTYCIVPTTRGKERSRPYEV 199
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELPPDGSTML 271
++ V+ + G KE+ L ++ AYG+D+ + L+ I P G +
Sbjct: 200 ILAEVQELARQGFKEITLLGQNVNAYGKDLYGRHGEGAFDFGDLIELIDRNSP--GIERI 257
Query: 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
R +P K + ++ R V + H+PVQSGSD+VL M R Y + +V
Sbjct: 258 RFTTNHPKDFTR--KMVEQIARAEKVCEWFHLPVQSGSDSVLRRMKRSYNRKQYLRLVGW 315
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 391
+ EL+P I TDII GFPGET+E+F +T++L++E ++ + + R GTPAA+M+
Sbjct: 316 IRELIPDAVITTDIIVGFPGETEEEFQETLSLVEEVQYDAAFMFMYSERAGTPAAQMEDR 375
Query: 392 PSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQV 445
S KK + + E RV +++ +I +G+ + G T+G + V
Sbjct: 376 LSVPEKKERLQRLMEVQNRIARAKNEARVGKVY--DILVEGLDKGKPDVVFGWTRGNILV 433
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
P ++ G V+IT G W++ GE+++
Sbjct: 434 TFPGDESLRGRIVPVRITRAGTWTLEGELVE 464
>gi|311068224|ref|YP_003973147.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|419823795|ref|ZP_14347329.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
gi|310868741|gb|ADP32216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus 1942]
gi|388472034|gb|EIM08823.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
atrophaeus C89]
Length = 509
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 133/443 (30%), Positives = 218/443 (49%), Gaps = 36/443 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC-- 114
Y++T+GC N+ D+E MAG A GY T++ ++A++ L+NT ++A + + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFMALGYEATNSVDDANVILLNTCAIRENAENKVFGELGH 127
Query: 115 -KSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K+ KK L V GC+ Q +R LK+ V ++ G I R+ E++ E E
Sbjct: 128 LKTLKKENPDLILGVCGCMSQEESVVNRILKKHPFVDMIFGTHNIHRLPELLSEAYLSKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LPKVRR K + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPKVRRGKIKGWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + ++G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 248 EVRRLASEGYKEITLLGQNVNAYGKDFD-DITYGLGDLMDELRKIDIPRIRFTTSHPRDF 306
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+HL E+ +L H +H+PVQSGS VL M R+Y + + +V + +P
Sbjct: 307 DDHLVEVLGKGGNLLDH------IHLPVQSGSSEVLKLMARKYDRARYMELVGKIKAAMP 360
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ TDII GFP ETDE F +T++L +E +F + + PR GTPAA+MK VP V
Sbjct: 361 NASLTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGTPAAKMKDNVPMRVK 420
Query: 397 KKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH----LVGHTKGYVQVLVPSTGN 452
K+R + L + + + M+ + + + + L G+T+ V
Sbjct: 421 KERLQRLNDLVKEISAK-KMKEYEGEVVEVLVEGESKNNPEILAGYTRKSKLVNFKGPKE 479
Query: 453 MLGTSALVKITSVGRWSVFGEVI 475
+G VKI WS+ GE++
Sbjct: 480 AIGKLVHVKIHQAKTWSLDGEMV 502
>gi|299535293|ref|ZP_07048616.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZC1]
gi|424737164|ref|ZP_18165620.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZB2]
gi|298729275|gb|EFI69827.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZC1]
gi|422948996|gb|EKU43372.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
fusiformis ZB2]
Length = 517
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 130/448 (29%), Positives = 217/448 (48%), Gaps = 36/448 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT--------- 109
++ ++ T+GC N+ D+E MAG GY T+ EEAD+ L+NT + +
Sbjct: 71 KSYHIMTYGCQMNEHDTEVMAGIFMQLGYTPTEVIEEADVVLLNTCAIRENAENKVFGEL 130
Query: 110 ---LIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
L K K+ + + V GC+ Q ++ L+ V +V G I R+ +++E
Sbjct: 131 GFLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAYMS 190
Query: 162 HE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
E + + ++ +LPK R + I GC CTYC + RG S E +
Sbjct: 191 KEMVIEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEI 250
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 251 IAEVRELAAAGYKEIMLLGQNVNAYGKDFE-DIDYRLGDLMDELRKIDIPRIRFTTSHPR 309
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+HL E+ + + + +H+PVQSGS+ VL M R+YT F +VD + +P +
Sbjct: 310 DFDDHLIEV--LAKRGNLVEHIHLPVQSGSNDVLKIMARKYTREHFLGLVDRIKAAIPEV 367
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKK 398
+ TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+
Sbjct: 368 TLTTDIIVGYPNETEEQFEETLSLYREVGFDAAFTYIYSPREGTPAAKMIDNVPEEVKKE 427
Query: 399 RSRELTSVFEAFTPYLGMEGRVERI--WITEIAADGIH------LVGHTKGYVQVLVPST 450
R + L V ++ +ER+ + E+ +G L G+T+ V +
Sbjct: 428 RLQRLNEVVGEYS-----RKALERLNGQVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKAP 482
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIKIL 478
++G VKIT +S+ GE ++++
Sbjct: 483 AEVIGQLVKVKITETTSYSLTGEFVEVV 510
>gi|158320272|ref|YP_001512779.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
gi|158140471|gb|ABW18783.1| MiaB-like tRNA modifying enzyme [Alkaliphilus oremlandii OhILAs]
Length = 433
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 219/431 (50%), Gaps = 29/431 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LIAKCKSA 117
T GC NQ +++ M GY + + E AD+++INT + + I + K
Sbjct: 8 TLGCKVNQYETQAMGELFEKEGYEIVSDEEVADVYVINTCTVTNVGDKKSRQFIRRAKRN 67
Query: 118 KKPLVVA--GCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL----LHR 169
+ ++A GC Q + +++ +EGV+IV G + +++VE VE ++ L +
Sbjct: 68 NEEAIIAVVGCYAQTAPKEVLAIEGVNIVIGTNERNKIVEAVENCSTEEKISLVDDIMKV 127
Query: 170 KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
K+ + + V+ +K L I GC CTYC +ARG + S +V V T++
Sbjct: 128 KQFEEMSIVDVK-DKTRAFLKIQEGCNQYCTYCIIPYARGPIRSRGPLEIVEEVETLVQK 186
Query: 230 GVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLK 286
G KEV L+ +YG+D G +L +L + G +R+ P F + L+
Sbjct: 187 GFKEVVLTGIHVASYGKDRSDGTDLIHILKQVNG---AQGLERIRLSSLEPTLFTDDFLR 243
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
E++++ + + H+ +QSG +A L MNR+YT +++ + + ++ P + + TD+I
Sbjct: 244 ELSQLDK---ICDHFHLSLQSGCNATLKRMNRKYTAEEYKEIAGRIRKVYPEVALTTDVI 300
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSRELTS 405
GFPGET+E+FN T IK+ F ++H+ ++ PR GTPA++ K+ + K RS +L
Sbjct: 301 VGFPGETEEEFNTTYEFIKDIGFSEIHVFKYSPRTGTPASKYKEQVDGLTKHYRSEKLID 360
Query: 406 VFEAF-TPYLG-MEGRVERIWITEIAADG-IHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ E Y G G+ ++ I+ + ++ G+T Y++VLVP++ + G V +
Sbjct: 361 LGEKMKNQYRGQFVGKERKVLFEAISKENKAYMEGYTDNYLKVLVPASEVVEGELTNVVL 420
Query: 463 TSVGRWSVFGE 473
+ + GE
Sbjct: 421 KELKEEYILGE 431
>gi|323703565|ref|ZP_08115210.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
gi|323531468|gb|EGB21362.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum
nigrificans DSM 574]
Length = 459
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/450 (28%), Positives = 222/450 (49%), Gaps = 37/450 (8%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAK 113
K G + ++ TFGC N+ DSE +AG L GY T++ EEADI ++NT +T +K
Sbjct: 13 KSEGQKFYHVITFGCQMNERDSESLAGMLEDMGYLPTESREEADIIILNTCCVRETAESK 72
Query: 114 C----------KSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVE 156
K AK L+ VAGC+ Q K++ I G I + +++
Sbjct: 73 VFGLLGRLRQLKVAKPDLIIGVAGCMSQQEEVAKKIRHSFPFVDIIFGTHNIHELPRMIQ 132
Query: 157 ETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
+ + E + + +K A ++P R++K + I GC CTYC + RG S
Sbjct: 133 QVRENQEAVLEVWATEKGIAENVPVRRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSR 192
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN-----LPILLNAIVAELPPDGST 269
E+++ ++ ++A G KEV L ++ +YG+D+ ++ L + L+ I G
Sbjct: 193 NPENIIEEIKGLVAQGYKEVTLLGQNVNSYGKDLQMDYRFADLLLDLDKIT------GLK 246
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
+R ++P + L ++ C + H+P Q+GS+ +L MNR YT + ++
Sbjct: 247 RIRFMTSHPRDFDQRLIDVIASTNKVCEH--FHLPAQAGSNRILKLMNRGYTREHYLQLI 304
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
D + + +PG I +DI+ GFPGET+EDF T++L++ ++ + R GTPAA+M+
Sbjct: 305 DNIRKAIPGASITSDIMVGFPGETEEDFADTLDLVRRVRYDSAFTFVYNIRSGTPAAKME 364
Query: 390 KVPSAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVL 446
+VP V R ++L + + EG+V + + E + L G ++ V+
Sbjct: 365 QVPEEVKSARIQKLIDLQNQISLENNRQEEGKVLEVLVEGETKTNPDKLAGRSRTNKLVV 424
Query: 447 VPSTGNMLGTSALVKITSVGRWSVF-GEVI 475
+ ++ G +KIT GR ++ GE++
Sbjct: 425 FDGSPDLTGQLVPIKITK-GRLNLLEGELV 453
>gi|292669800|ref|ZP_06603226.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
gi|292648597|gb|EFF66569.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia ATCC
43541]
Length = 444
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 201/432 (46%), Gaps = 27/432 (6%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC N +D+E M GQL A GYA T+ + ADI LINT ++A D + K KK
Sbjct: 17 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 76
Query: 120 ----PLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 168
L+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 77 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 136
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 137 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 196
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 197 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 254
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+ H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 255 IKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIVG 312
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-----VPSAVVKKRSREL 403
FPGET+EDF Q + ++E ++ + + R GTPAA M V A + + E
Sbjct: 313 FPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATMANQVADDVKHARLNRLMEEQ 372
Query: 404 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
++ A L M +E + D G T+ VL P G VKI
Sbjct: 373 NAISRAINERL-MGAELEIMVEGASKNDPRVWSGRTRTNKIVLFPHGAEREGDFVRVKIN 431
Query: 464 SVGRWSVFGEVI 475
W + GEV+
Sbjct: 432 QPQTWLLKGEVV 443
>gi|448356310|ref|ZP_21545043.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
gi|445653343|gb|ELZ06214.1| MiaB-like tRNA modifying protein [Natrialba chahannaoensis JCM
10990]
Length = 417
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 208/402 (51%), Gaps = 36/402 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D ++AD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPDDADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 SAETADLFITGCMALAQG----EEFAQADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKKATGKIDSPSIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +E+A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLEDICA---IEGDFRVRVGMANPKGVHGIREELADV 227
Query: 292 LR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y+FLH PVQSGSD VL M R++ +S++ V++T +++ ++TD I GFP
Sbjct: 228 FAANDELYNFLHAPVQSGSDDVLGDMRRQHQVSEYLEVIETFDDVLEYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ET+ D Q++ L++E + +V++++F RPGT AA MK + V K RS+E+++
Sbjct: 288 TETEHDHEQSMALLRETRPEKVNVTRFSKRPGTDAAEMKGLGGQVKKDRSKEMSAAKRDI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
V EA+ +G E R + + E AD + Y Q++V
Sbjct: 348 VGEAYGDMVG-EIREGVLVVEEGTADSVKC--RDAAYRQIIV 386
>gi|342213682|ref|ZP_08706404.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
gi|341597707|gb|EGS40249.1| MiaB-like protein [Veillonella sp. oral taxon 780 str. F0422]
Length = 433
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 210/437 (48%), Gaps = 26/437 (5%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT-------LI 111
+T+ T GC NQ D++ M G GY EEA I++INT S + LI
Sbjct: 2 KTVAFTTLGCRVNQYDTDAMKGLFIKAGYTPVGFDEEAAIYVINTCSVTNMGEKKSRQLI 61
Query: 112 --AKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHE---- 163
AK ++ + +VV GC Q + + + ++GV++V G +++VE+VE E
Sbjct: 62 RQAKRRNPEAFIVVTGCYAQLAPEVISAIDGVNLVIGTANRNKIVELVENIPSTEEQISI 121
Query: 164 VR-LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
VR ++ + L K + I GC C++C + RG L S +E +V
Sbjct: 122 VRNVMEESTFEEMPLFGNEIEKCRAFMKIQEGCNNFCSFCIIPYTRGKLKSRKIEDIVEE 181
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++A G KEV L+ G YG ++ P L + L DG +R G +
Sbjct: 182 AKRLVAYGYKEVVLTGIHLGNYGIELP-ERPTLGRVVRELLTIDGLERIRFGSIESVEVS 240
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
E L E+ + +P V LH+P+Q+GSD VL +MNR Y L ++ +V L +P + I
Sbjct: 241 EELIEL--MATNPRVCPNLHLPLQAGSDPVLKSMNRHYNLQQYKDLVKYLRSRIPNLSIT 298
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSR 401
TDII GFPGETDE F +T+ +KE F +H + R GTPAA+M+ +VP AV K R
Sbjct: 299 TDIIAGFPGETDELFEETMRTVKEVGFTHIHAFPYSIREGTPAAKMEDQVPEAVKKTRVA 358
Query: 402 ELTSV-FEAFTPYLG-MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
L + E F Y + ++ I + D + G T YV +P + +
Sbjct: 359 LLNQLGKEGFKAYANRFLNQPVKVLIEQ--CDDFYYYGLTNEYVHSKIPKQDHQFIVGDI 416
Query: 460 V--KITSVGRWSVFGEV 474
V K+T V V E+
Sbjct: 417 VNGKVTEVHSDVVLVEI 433
>gi|425459253|ref|ZP_18838739.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
gi|389823075|emb|CCI29007.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Microcystis aeruginosa PCC 9808]
Length = 446
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 141/447 (31%), Positives = 216/447 (48%), Gaps = 42/447 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++++ EAD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDLGFQWSEDANEADLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + V I+G Q +R+ +++++ G +V
Sbjct: 69 AKRKQTQPDLTLVVAGCVAQQEGEQLLRRVPEVDLIIGPQHANRLGDLLQQVFDGSQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ + +NV GC CTYC RG S T ++ +
Sbjct: 129 TEPIHIME-DITKPRRDSNITAW-VNVIYGCNERCTYCVVPGVRGVEQSRTPAAIRAEMA 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G +E+ L ++ AYGRD+ G +L + + G LR ++P
Sbjct: 187 QLGQQGYQEITLLGQNIDAYGRDLPGVTASGRHLHNFTDLLYYVHDVAGIERLRFATSHP 246
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E L + + L P V H+P QSG + +L AM R YT +R ++ + L+P
Sbjct: 247 RYFTERLIKACQEL--PKVCEHFHIPFQSGDNDILKAMKRGYTQEKYRQIIANIRNLMPD 304
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK- 397
I+ D I GFPGET+ F T+ L+ E F Q++ + + PRPGTPAA S VK
Sbjct: 305 AAISADAIVGFPGETEAQFENTLKLVDEIGFDQLNTAAYSPRPGTPAAVWDDQLSEQVKS 364
Query: 398 ---KRSREL--TSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+R L T E YL GR+E I + ++ D ++G T+G L TG
Sbjct: 365 DRLQRLNHLVATKAAERSQRYL---GRIEEILVEDVNPKDASQVMGRTRG--NRLTFFTG 419
Query: 452 N---MLGTSALVKITSVGRWSVFGEVI 475
+ + G VKIT V +S+ G +
Sbjct: 420 DIEELRGKFVKVKITEVRPFSLTGVIF 446
>gi|383753488|ref|YP_005432391.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
gi|381365540|dbj|BAL82368.1| putative MiaB-like tRNA modifying enzyme family protein
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 432
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/439 (28%), Positives = 213/439 (48%), Gaps = 47/439 (10%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
+ + T GC NQ ++E M G GY + E+AD ++INT S +I +
Sbjct: 4 VALTTLGCKVNQFETETMEGLFKKSGYDIVPFEEKADFYVINTCSVTSLGDRKSRQIIRR 63
Query: 114 CKSAKKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK--------G 161
+ + ++A GC Q ++K +EGV +V G ++ R+VE VE+ + G
Sbjct: 64 AQRTNENAIIAVCGCYSQVHPEEIKAIEGVRVVLGTKERSRIVEYVEQAAREDGILDEVG 123
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + + +P D+P+ R L I GC C+YC +ARG + S ++ +
Sbjct: 124 NIMEAHEFEDIPIYDMPQRTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRHLDKIHS 179
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 278
+ ++ G KE+ L+ GAYG+D+ + L +A L +G LR+G
Sbjct: 180 EAKKLVDAGFKEIVLTGIHLGAYGKDLDGEV-TLADACREVLKVEGLKRLRLGSLESIEL 238
Query: 279 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + ++E H LH+P+Q+GSDAVL MNR Y ++F +++ + VP
Sbjct: 239 SPDLFALIREDDRFCAH------LHLPLQAGSDAVLKDMNRHYDTAEFGRLIEQVEREVP 292
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 396
G+ ++TDII GFPGET+E F ++ +++ F ++H+ + R GTPAA R ++P V
Sbjct: 293 GVAVSTDIIVGFPGETEEQFTDSLKFVEKMNFSRMHVFPYSKRSGTPAAERKDQIPDPVK 352
Query: 397 KKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV--PS 449
K R++ + + E +LG +V + E DG+ G T Y++V P
Sbjct: 353 KDRAKRMQELANRKTEEFHQHFLGQTKQV----LFETNNDGV-TDGLTDNYIRVYTDSPV 407
Query: 450 TGNMLGTSALVKITSVGRW 468
T + L ++ G W
Sbjct: 408 TCGEIYQVKLERLYQDGVW 426
>gi|422343286|ref|ZP_16424214.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
gi|355378593|gb|EHG25773.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Selenomonas noxia F0398]
Length = 437
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 135/432 (31%), Positives = 201/432 (46%), Gaps = 27/432 (6%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC N +D+E M GQL A GYA T+ + ADI LINT ++A D + K KK
Sbjct: 10 YGCQMNIADAERMEGQLQAAGYARTEETANADIILINTCCVRETAEDKVYGKIGEVKKIK 69
Query: 120 ----PLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLH 168
L+ +AGC+ Q D ++ + V G ++ + ++ E H V +
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIRAEHSPVVDVAL 129
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
A DLP R KF +PI GC CTYC + RG S E +V VR +A
Sbjct: 130 SDSEIAEDLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRAPEEVVAEVRRAVA 189
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288
+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L +
Sbjct: 190 EGYREVTLLGQNVNSYGKDHKEADFADLLRMVDEV--EGIRRVRFMTSHPKDISDKLIDT 247
Query: 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
+ H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I G
Sbjct: 248 IKSGAHICEH--IHLPVQYGSSRLLKAMNRGYTVEKYRERALRVREALPEASLTTDLIVG 305
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-----VPSAVVKKRSREL 403
FPGET+EDF Q + ++E ++ + + R GTPAA M V A + + E
Sbjct: 306 FPGETEEDFAQMLAFLREMRYDSAYTFLYSKRSGTPAATMANQVADDVKHARLNRLMEEQ 365
Query: 404 TSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKIT 463
++ A L M +E + D G T+ VL P G VKI
Sbjct: 366 NAISRAINERL-MGAELEIMVEGASKNDPRVWSGRTRTNKIVLFPHGAEREGDFVRVKIN 424
Query: 464 SVGRWSVFGEVI 475
W + GEV+
Sbjct: 425 QPQTWLLKGEVV 436
>gi|312127450|ref|YP_003992324.1| tRNA-i(6)a37 thiotransferase enzyme miab [Caldicellulosiruptor
hydrothermalis 108]
gi|311777469|gb|ADQ06955.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Caldicellulosiruptor
hydrothermalis 108]
Length = 471
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 207/435 (47%), Gaps = 29/435 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------IAKC 114
T+GC N DSE +AG L+A GY T+N +EAD+ + NT S + + +
Sbjct: 42 TYGCQMNVHDSEKLAGMLNAMGYIETENIQEADLIIFNTCSVREHAESRVYGNIGPLKRL 101
Query: 115 KSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETL--KGHEVR 165
K K L+ V GC+PQ ++L + I G + + + +++ + K +
Sbjct: 102 KDKKPDLIIGVCGCMPQQVEVAQKLAKLFPFLDIIFGTKSLHKFPQLLYTAIMEKKTVID 161
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ + + +P R+ + I GC C+YC + RG S E +V +
Sbjct: 162 VSEDEDVVVEGIPTARKQGVSAFVNIIYGCNNFCSYCIVPYVRGRERSRRPEEIVYEIEQ 221
Query: 226 VIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ +GVKEV L ++ +YG+D+G + P LL V E+ G +R ++P + +
Sbjct: 222 LAQNGVKEVTLLGQNVNSYGKDLGDGITFPKLLEK-VNEIK--GIERIRFVTSHPKDLSD 278
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L L C +H+PVQSGS +L AMNR YT D+ +++ L +P + I T
Sbjct: 279 ELIVAMRDLEKVC--EHIHLPVQSGSTRILKAMNRHYTKEDYLRLIEKLKTNIPDIAITT 336
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRE 402
DII GFPGETDEDF T+++ ++ +F + + R GTPA +M +VP + ++R +
Sbjct: 337 DIIVGFPGETDEDFEDTLDVCRKVEFDSAYTFIYSKRRGTPAEKMPNQVPDDIKRQRFQR 396
Query: 403 LTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
L + E A M G+ + I + LVG T+ V V + V
Sbjct: 397 LVKLVEDIALKKNRQMLGKTYEVLIDGQSKRNNLLVGRTRTNKVVNVKCPEEYMFKFVNV 456
Query: 461 KITSVGRWSVFGEVI 475
KI ++GEVI
Sbjct: 457 KILEAAEHWLYGEVI 471
>gi|387771045|ref|ZP_10127217.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
gi|386902964|gb|EIJ67785.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pasteurella bettyae CCUG
2042]
Length = 474
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 226/456 (49%), Gaps = 43/456 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
T+ +++KT+GC N+ DS MA L S G LT+ EEAD+ L+NT Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLESTHGLELTEIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 110 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+ + K KK + V GCV +G + V I+ G Q + R+ ++ + G
Sbjct: 62 QLGRWKELKKKNPNLLIGVGGCVASQEGEHIRQRAPFVDIIFGPQTLHRLPAMINQIRGG 121
Query: 162 H----EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
+V +K L PK FV I+ GC CTYC + RG S +
Sbjct: 122 QSSVVDVSFPEIEKFDCLPEPKAEGPTAFVSIME---GCNKYCTYCVVPYTRGEEVSRPL 178
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRI 273
+ ++ + + A GV+EV L ++ AY D G+ L +VA + DG LR
Sbjct: 179 DDVLFEIAQLAAQGVREVNLLGQNVNAYRGPTFDGGICSFAELLRLVAAI--DGIDRLRF 236
Query: 274 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+NP LE +I +V R P + SFLH+PVQ+GSD +L+ M R +T ++++++ L
Sbjct: 237 TTSNP---LEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKL 293
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 392
+ P +QI++D I GFPGET+E+F QT+NLI++ F + + RPGTPAA M P
Sbjct: 294 RAVRPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSYSFVYSARPGTPAADM---P 350
Query: 393 SAVVKKRSRELTSVF------EAFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQV 445
V ++ ++ + +A M G +R+ + + D + L G T+ V
Sbjct: 351 DDVTEEEKKQRLYLLQQRINNQALQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIV 410
Query: 446 LVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 481
T +M+G +KIT V S+ GEV++ Q+
Sbjct: 411 NFVGTPDMIGKFVDIKITDVFTNSLRGEVVRTEEQM 446
>gi|383786187|ref|YP_005470756.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
gi|383109034|gb|AFG34637.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Fervidobacterium pennivorans DSM 9078]
Length = 430
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 220/434 (50%), Gaps = 23/434 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAK 113
+++ T+GC N++D+E L G+ + D+ +EADI ++NT + + + I K
Sbjct: 3 VHIYTYGCQMNENDTEIAKQLLLDGGFEVVDSEDEADIVILNTCAVRKKSEDKVYSHIGK 62
Query: 114 CKSAKKPLVVAGCVPQGSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ K + + GCV ++ GVS ++G + I +V E V G + ++ L
Sbjct: 63 LRKKGKRIGIMGCVADKEKENLFKRGVSFVIGTRAIAKVPEAVLNAKNGAK-QIYLDDTL 121
Query: 173 PALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG 230
+D KV R +K + I GC CTYC + RG S +ES++ VRT++ G
Sbjct: 122 DEIDYHKVETRSSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRPMESVLLEVRTLVEKG 181
Query: 231 VKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FILEHLKE 287
KE ++ AYG+D+ G +L LL A++ DG L + P F LE +
Sbjct: 182 YKEFTFLGQNVDAYGKDLNDGTSLAKLLRE-TAQI--DGVKRLWFLTSYPTDFSLEIPQA 238
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ E +P + +H+PVQ GSD +L AMNR YT ++ +++ + +VP I++DII
Sbjct: 239 MVE---NPKIAKSIHLPVQHGSDKILRAMNRRYTREEYIDLINNIRNIVPDASISSDIIV 295
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRELTS 405
GFPGETDEDF TV L+K+ KF +++++ + PR GT A + K VP +R L +
Sbjct: 296 GFPGETDEDFEATVKLVKDIKFERLNLAIYSPREGTVAWKHFKDDVPYKTKVRRMSYLLN 355
Query: 406 VFEAFTPYLGMEGRVERIW-ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITS 464
+ + L + +R+ I E A G + + ++G + +VK+T
Sbjct: 356 LQKMINRELNESYKDKRVEVIVEAQAKNGLFYGRDIRNKIISFEGSHELIGKTVVVKVTK 415
Query: 465 VGRWSVFGEVIKIL 478
+ ++G V ++L
Sbjct: 416 ITAGPLYGTVEEVL 429
>gi|297584113|ref|YP_003699893.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
MLS10]
gi|297142570|gb|ADH99327.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus selenitireducens
MLS10]
Length = 516
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 219/439 (49%), Gaps = 32/439 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL---IAKCK 115
++T+GC N+ DSE MAG L G+ T N +EAD+ L+NT ++A + + I K
Sbjct: 76 IRTYGCQMNEHDSENMAGILLEMGFESTVNQDEADVILLNTCAIRENAENKVFGEIGNLK 135
Query: 116 SAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
K+ + V GC+ Q +R L++ + V ++ G I R+ E+++ + E
Sbjct: 136 VMKRENPGLIVGVCGCMSQEESVVNRILQKHQHVDLIFGTHNIHRLPELIKNAIFSKEMI 195
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ ++P+ R+ +F + I GC CTYC RG S E ++ V
Sbjct: 196 VEVWSQEGDIIENMPRARKGQFQGWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDVIEEV 255
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + +G KE+ L ++ AYG+D+ ++ L ++ ++ G +R ++P +
Sbjct: 256 RHLARNGYKEITLLGQNVNAYGKDL-LDSSYRLADLLDDIRDIGIPRVRFTTSHPWDFDD 314
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L ++ + + + +H+PVQSG++ VL MNR+YT ++ + D + E +P + T
Sbjct: 315 ELIDV--IAKGGNMMEHIHLPVQSGNNDVLKIMNRKYTREEYVALADKIKEKIPHATLTT 372
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII G+P ET+E F T++L+KE F + + R GTPAA M+ VP V K R +
Sbjct: 373 DIIVGYPNETEEQFQDTLSLVKEMAFDAAYTYVYSAREGTPAAAMEDDVPKEVKKDRLQR 432
Query: 403 LTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGT 456
L V + M R E+ +G L+G T+ V + +++G
Sbjct: 433 LNEVVNRHS---AMSNERMRDRTVEVLVEGESKKNPDVLMGRTRTNKLVNFKAPKSVIGE 489
Query: 457 SALVKITSVGRWSVFGEVI 475
VKIT WS+ GE++
Sbjct: 490 LVYVKITDAKSWSLNGELV 508
>gi|428205367|ref|YP_007089720.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
gi|428007288|gb|AFY85851.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Chroococcidiopsis
thermalis PCC 7203]
Length = 454
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 141/448 (31%), Positives = 221/448 (49%), Gaps = 42/448 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ EA + L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNEASLLLYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 -------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
A +VVAGCV Q G L+ + + +V G Q +R+ E++E+ G++V
Sbjct: 69 AKRKQEQADLTIVVAGCVAQQEGETLLRRVPEIDLVMGPQHANRLEELLEQVFDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
++ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIQI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIKAEMV 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G +L L + + V ++P G LR +
Sbjct: 187 ELGKQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHTLTDLLYYVHDVP--GVDRLRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L + AE+ P V H+P QSG + VL M+R YT +R ++D + +L
Sbjct: 245 HPRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMSRGYTHEKYRRIIDKIRQL 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPGTPAA S
Sbjct: 302 MPDASISADAIVGFPGETEAQFENTLKLVADIGFDHLNTAAYSPRPGTPAALWDAQLSEE 361
Query: 396 VKKRSRELTSVFEAFTPYLGME---GRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
VK + + A T + GRVE + + + + ++G T+G L G
Sbjct: 362 VKSDRLQRLNHLVATTAQARSQRYLGRVEEVLVEDQNPKNPQQVMGRTRG--NRLTFFDG 419
Query: 452 NML---GTSALVKITSVGRWSVFGEVIK 476
+++ G VKIT V +S+ GE I+
Sbjct: 420 DIIQLKGQLVTVKITEVRAFSLTGEPIE 447
>gi|307720461|ref|YP_003891601.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
DSM 16294]
gi|306978554|gb|ADN08589.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Sulfurimonas autotrophica
DSM 16294]
Length = 434
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/445 (30%), Positives = 214/445 (48%), Gaps = 40/445 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTQSAMDTLIAKC-- 114
++ ++++T GC+ N DSE+M QL GY T N E+AD+ LINT S + + K
Sbjct: 2 SKKLFIETLGCAMNSRDSEHMIAQLREKEGYETTQNLEDADLILINTCSVRERPVHKLFS 61
Query: 115 -----KSAKKP---LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K KKP + V GC G +K V+ V G + + ++ EV+ + K E
Sbjct: 62 ELGGFKKRKKPSAKIGVCGCTASHLGEEIIKRAPYVNFVLGARNVSKIGEVLHKD-KAVE 120
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ + + + A D R + + + I++GC CTYC RG S + ++
Sbjct: 121 IDINYDESEFAFD--DFRTSSYKAYINISIGCDKQCTYCIVPKTRGDEISIPDDLIINEA 178
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIG------VNLPILLNAIVAELPPDGSTMLRIGMTN 277
+ + +G KE++L ++ YGR VN LL + + RI T+
Sbjct: 179 KRAVDNGAKEIFLLGQNVNNYGRRFSSSEHEKVNFTELLRRL-----SKIEGLERIRFTS 233
Query: 278 P-PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P PF ++ + I E ++P + +H+P+QSGS VL M R YT F V L +
Sbjct: 234 PHPFHMDD-EFIEEFAKNPKICKSMHMPLQSGSSKVLKEMKRGYTKEWFLNRVQKLRSVC 292
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAV 395
P + I+TDII FPGE+DEDF T++++K+ KF Q+ ++ PRP T A V V
Sbjct: 293 PDVSISTDIIVAFPGESDEDFADTIDVMKQVKFDQIFSFKYSPRPETEAEHFTNVVDEDV 352
Query: 396 VKKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST 450
R L S+ E T YL G R++ + D + G + + + V +
Sbjct: 353 ASDRLAYLQSLHNELLDEINTKYL---GETFRVYFENLNKDNF-VSGRSDNNLVIKVKGS 408
Query: 451 GNMLGTSALVKITSVGRWSVFGEVI 475
+LG VKITS+GR + GE++
Sbjct: 409 EELLGEFRDVKITSIGRTILTGEIV 433
>gi|374339750|ref|YP_005096486.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
gi|372101284|gb|AEX85188.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Marinitoga piezophila KA3]
Length = 450
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/439 (28%), Positives = 221/439 (50%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y+KTFGC N ++SE M G L G+ T+N +EAD+ ++N+ + A + L
Sbjct: 3 FYIKTFGCQMNVNESEIMTGILEKEGFEWTENPQEADVIILNSCAVREKAENKLYGAIGS 62
Query: 113 --KCKSAKKPLVVA--GCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
K K K+ L++A GCV + ++ ++ V+ V G + + + ++ + +
Sbjct: 63 YGKLKKKKEDLIIAVGGCVAEKEKENIIQRFHEVNFVFGTRNYMNIKKFIDRAKRSKKRF 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V L + DLPK +K + I GC CTYC + R S VE ++ V
Sbjct: 123 VDLSDEIDKISADLPKHPYSKHHGWINIIYGCNKYCTYCIVPYTRHLEKSRPVEDIIKEV 182
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFIL 282
+ +G +E+ ++ +YG+D G P LN ++ E D + + P I
Sbjct: 183 KYYNDNGYREITFLGQNVDSYGKDFGDGKP-KLNILIKEAAKYDSIERIWFLTSYPSDIT 241
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ L I EV +P H+PVQ+GS+ +L AMNR+YT + +++ + + VP + I+
Sbjct: 242 DDL--IEEVANNPKAAKNFHLPVQAGSNNILRAMNRKYTREYYLELLEKIKKTVPKVTIS 299
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRS 400
+DII GFPGETDEDF +TV L+K+ ++ +++++++ PR GT +A+ + +P + KR
Sbjct: 300 SDIIVGFPGETDEDFEETVELVKKARYERLNLAEYSPREGTISAKYYEDNIPKRIKNKRF 359
Query: 401 RELTSVFEAFTPYLGMEGRVERIW--ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
+ L ++ + + E ++++ I E +G T V+ S + G
Sbjct: 360 QYLMNIQKQIN-HEENEKYLDKVLTVIQENKTKSGAYLGRTINNKVVIFESNPELSGKFV 418
Query: 459 LVKITSVGRWSVFGEVIKI 477
VKI + ++GEV+ I
Sbjct: 419 KVKINKISAGPLYGEVVAI 437
>gi|433592660|ref|YP_007282156.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|448335096|ref|ZP_21524248.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|433307440|gb|AGB33252.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
gi|445618032|gb|ELY71616.1| MiaB-like tRNA modifying enzyme [Natrinema pellirubrum DSM 15624]
Length = 417
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 133/433 (30%), Positives = 216/433 (49%), Gaps = 39/433 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC 114
+++T+GC+ N+ +S + +L G+ D E+AD+ ++NT + M +
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGPEQADVAILNTCTVVEKTERNMLRRAEEL 64
Query: 115 KSAKKPLVVAGC--VPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
L + GC + QG +E + G Q+ EV E G E
Sbjct: 65 ADETADLFITGCMALAQG----EEFARADVDG--QVLHWDEVPEAVTNG-ECPTTTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S ++E V + R +I G K
Sbjct: 118 PILD-------GVVGILPIARGCMSDCSYCITKQATGKIDSPSIEENVEKARALIHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G L LL I A +G +R+GM NP + +++A+V
Sbjct: 171 EIRITGQDTGVYGWDEGERKLHRLLERICA---IEGDFRVRVGMANPKGVHGIREDLADV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ + ++ VV+ E + ++TD I GFP
Sbjct: 228 FAENDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVEAFDERLDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVF--- 407
ETD D Q++ L++E + ++++++F RPGT AA +K + + K+RS+E++ V
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREI 347
Query: 408 --EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
EA+ +G E R + + + + AD + Y Q++V + G G ++I
Sbjct: 348 VGEAYADMVG-EVREDCLVVEDGTADSVKC--RDSAYRQIIVQNADDYGIAPGDFVDLEI 404
Query: 463 TSVGRWSVFGEVI 475
T+ FGE +
Sbjct: 405 TAHETMYAFGEPV 417
>gi|393200264|ref|YP_006462106.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
gi|327439595|dbj|BAK15960.1| 2-methylthioadenine synthetase [Solibacillus silvestris StLB046]
Length = 511
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 211/440 (47%), Gaps = 28/440 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT----------- 109
Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NT + +
Sbjct: 66 FYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEMIEEADVVLLNTCAIRENAENKVFGELGF 125
Query: 110 -LIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
L K K+ + + V GC+ Q ++ LK+ + V +V G I R+ ++ + E
Sbjct: 126 LLKYKRKNPEMLIGVCGCMSQEESVVNKILKQYQHVDMVFGTHNIHRLPNILHDAYMSKE 185
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 186 MVVEVWSKEGDVIENLPKKRIGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEIIQ 245
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ EL +R ++P
Sbjct: 246 EVRELAAQGYKEIMLLGQNVNAYGKDFD-DIEYRLGDLMDELRKIDIPRIRFTTSHPRDF 304
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+HL I + + + +H+PVQSGS+ +L M R+YT F +VD + +PG+ +
Sbjct: 305 DDHL--IKVLAKGGNLVDHIHLPVQSGSNEILKIMARKYTREHFLQLVDKIKAAIPGVTL 362
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII G+P ET+E F +T++L ++ F + PR GTPAA+M V K R
Sbjct: 363 TTDIIVGYPNETEEQFQETLDLYRQVGFDMAFTYIYSPREGTPAAKMVDNVTEEEKKDRL 422
Query: 401 RELTSVFEAFTPYL--GMEGRVERIWI--TEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
L +V ++ G+EG+ + + + D + L G+T+ V + +G
Sbjct: 423 HRLNAVVSEYSAKALKGLEGQTVEVLVEGSSKRRDDV-LAGYTRKNRLVNFKADPKFIGK 481
Query: 457 SALVKITSVGRWSVFGEVIK 476
VKI +S+ GE ++
Sbjct: 482 LVNVKILEAKSYSLMGEFVE 501
>gi|385799559|ref|YP_005835963.1| MiaB family RNA modification protein [Halanaerobium praevalens DSM
2228]
gi|309388923|gb|ADO76803.1| RNA modification enzyme, MiaB family [Halanaerobium praevalens DSM
2228]
Length = 438
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/431 (29%), Positives = 224/431 (51%), Gaps = 24/431 (5%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----QSAMDTLI----AKCK 115
T GC NQ ++E + GY + D SE+AD++++N+ ++A T AK K
Sbjct: 11 TLGCKVNQYETEAVIDIFLENGYQIVDFSEKADVYIVNSCTVTNEAARKTRQIARRAKRK 70
Query: 116 SAKKPLVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEV--RLLHRKK 171
+ + + GC Q D ++ +E + V G ++ EE L G + L ++
Sbjct: 71 YSNSLVAIVGCYTQAFPDEVRNIEEIDFVMGSNNKAEILAKAEEMLAGKNINSELKEYQQ 130
Query: 172 LPALDLPKVRR--NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
L + K++ N + I GC C+YC +ARG + S ES+ V+ +
Sbjct: 131 LKEYEDLKLKSLSNTTRANVKIEDGCNQFCSYCIIPYARGPVRSRKKESITEEVKRLSKQ 190
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289
GVKE+ L+ GAYG D G + A + E + ++ R+ +++ E + I
Sbjct: 191 GVKEIVLTGTHLGAYGSDKGNKKAL---AQLMESLTEIKSLKRVRLSSIEGT-EIDQGII 246
Query: 290 EVLRHPCVYS-FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348
++ ++ LH+P+QSGS+ +L AMNR YT+ +F+ V L + +P + I TD+I G
Sbjct: 247 NLISESDIFCPHLHLPLQSGSNQILKAMNRPYTVEEFKKTVAKLRKKIPDLAITTDVIVG 306
Query: 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408
FPGET++ F +T+ ++KE F +VH+ + R GTPAA+M+++ +VK+ S++L E
Sbjct: 307 FPGETEKTFAETLKVVKEISFAKVHVFPYSAREGTPAAKMEQLNGNIVKEYSKKLRLANE 366
Query: 409 AFTPYLGME--GRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLGTSALVKI-TS 464
A E G+ +++ I E+ +L+ G+T Y++VL+ + + + VK+ S
Sbjct: 367 ALMLNYQKEFIGKTKKVLIEEVRDHKTNLLTGYTDNYLKVLISGSDALKNSLVKVKLEES 426
Query: 465 VGRWSVFGEVI 475
+ + + G++I
Sbjct: 427 IDPYHLSGKII 437
>gi|306842738|ref|ZP_07475380.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
gi|306287082|gb|EFM58587.1| RNA modification enzyme, MiaB family [Brucella sp. BO2]
Length = 467
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 222/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPRA-NTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + ++ P M ++ D I GFPGETD+DF T+ L++E + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRDVRPDMALSGDFIVGFPGETDQDFEDTMQLVREVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYDFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|451343574|ref|ZP_21912645.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
DSM 20559]
gi|449337671|gb|EMD16828.1| MiaB-like tRNA modifying enzyme [Eggerthia catenaformis OT 569 =
DSM 20559]
Length = 435
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 131/436 (30%), Positives = 209/436 (47%), Gaps = 33/436 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS---- 116
+ +T GC N +SE M GY D E++DI++INT + +T AK +
Sbjct: 4 VAFQTLGCKVNSYESEGMLELFKKKGYESVDFKEKSDIYVINTCTVTNTGDAKSRQMIRR 63
Query: 117 AKKP-----LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG-------H 162
A+K + V GC Q S + +++GV IV G Q +++VE VE+ LK H
Sbjct: 64 ARKRNPNSIIAVVGCYAQIASAAVADIDGVDIVIGTQNKNKIVEYVEDYLKNKQQIIDVH 123
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+V L K L++ N+ + I GC CT+C +ARG + S E ++ +
Sbjct: 124 DVMKL--KSFEDLNIASFE-NRTRAFMKIQDGCNNFCTFCIIPYARGAIRSRDKEDVIRQ 180
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
+ ++ G E+ L+ T YG D+ + LL + ++ G LRI +
Sbjct: 181 AQELVDKGFVEIVLTGIHTAGYGIDLEDYSFYDLLKDLTNKVK--GLKRLRISSIEMSQV 238
Query: 282 LEHLKEIAEVLRHPCV-YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+I ++ H + LH+P+QSG+D +L M R YT S+F ++ L E +P +
Sbjct: 239 TP---DIINLMAHSSIIVDHLHIPIQSGNDKILKKMARHYTTSEFEEKLNKLKEALPNLS 295
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
+ TD+I GFPGET+EDF T IK+ F Q+H+ + R GTPAARM ++P + KKR
Sbjct: 296 VTTDVIVGFPGETEEDFESTYQWIKKNHFNQLHVFPYSARTGTPAARMPYQIPGDIKKKR 355
Query: 400 SRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L + ++ G+ + E DG + +GH Y++V V +L
Sbjct: 356 VKRLLQLSDSLKAEFASWQIGKYLDVLFEE-EKDG-YKIGHASNYLKVKVRDQDIILNQI 413
Query: 458 ALVKITSVGRWSVFGE 473
+ I + GE
Sbjct: 414 YSIHIKEQNGVDLIGE 429
>gi|427420460|ref|ZP_18910643.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
gi|425756337|gb|EKU97191.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Leptolyngbya sp. PCC 7375]
Length = 450
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 216/448 (48%), Gaps = 38/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KS 116
++ TFGC N++DSE MAG L G T+N EAD+ L NT + D K K
Sbjct: 7 HITTFGCQMNKADSERMAGILDDMGMNWTENPLEADVVLYNTCTIRDNAEQKVYSYLGKQ 66
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G++V
Sbjct: 67 AKRKQSDPNVTLIVAGCVAQQEGESLLRRVPELDLVMGPQHANRLSDLLEQVFSGNQVVA 126
Query: 167 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ K RR+ K + + GC CTYC RG S T E++ +
Sbjct: 127 TEPVHI-MEDITKPRRDSKISAWVNVIYGCNERCTYCVVPGVRGIEQSRTPEAIRAEMEL 185
Query: 226 VIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGMTN 277
+ G EV L ++ AYGRD+ G+ N L V ++P G +R ++
Sbjct: 186 LGQQGYTEVTLLGQNIDAYGRDLPGITPEGRRQNTLTDLLYYVHDVP--GIERIRFATSH 243
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L K AE+ P V H+P QSG + VL AM R YT +R ++DT+ V
Sbjct: 244 PRYFTERLIKACAEL---PKVCEHFHIPFQSGDNDVLKAMARGYTQEKYRRIIDTVRRYV 300
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA----RMKKVP 392
P I+ D I GFPGET+ F T+ L+++ F Q++ + + PRP TPAA ++ +
Sbjct: 301 PDAAISADAIVGFPGETEGQFQNTLKLVEDIGFDQLNTAAYSPRPNTPAALWESQLDEPT 360
Query: 393 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTG 451
+ +R L S+ +A R+ER+ I ++ H V G T+
Sbjct: 361 KSDRLQRLNHLVSI-QAAERSQRYANRIERVLIEDVNPKNPHQVMGRTRTNRLTFCEGDI 419
Query: 452 NML-GTSALVKITSVGRWSVFGEVIKIL 478
N L G V IT V +S+ GE + +L
Sbjct: 420 NELKGKIIEVNITEVRAFSLTGERVNVL 447
>gi|452990394|emb|CCQ98409.1| tRNA N(6)-threonylcarbamoyladenosine (t(6)A) methylthiotransferase
[Clostridium ultunense Esp]
Length = 443
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 135/428 (31%), Positives = 213/428 (49%), Gaps = 33/428 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY D EEAD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNFYETEAIWQLFKNKGYTQVDFEEEADVYVINTCTVTNTGDKKSRQMIR 62
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
K P + V GC Q S + E+ GV IV G Q DR+++ VEE
Sbjct: 63 RAIRKNPNAVVAVTGCYAQTSPAKVLEIPGVDIVIGTQGRDRLLDYVEEYKNSRMPINAV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ +K+ L +P K L I GC CT+C A+G S ES++ +
Sbjct: 123 ANIMKQKEFEELSVPTFS-EKTRAFLKIQEGCNNFCTFCIIPWAKGLSRSRQPESVLQQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
RT+ A+G +E+ L+ TG YG D+ +LP LL + E+ +G +RI I
Sbjct: 182 RTLAANGYREIVLTGIHTGGYGEDLEDYSLPRLLMDL-KEI--EGLHRIRISSIEASQIG 238
Query: 283 EHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
E E+ EV R+ P + LH+P+Q+G D +L +M+R+YT + ++ ++ + E +P + I
Sbjct: 239 E---EMIEVFRNNPKMCRHLHIPLQAGDDTILKSMHRKYTTAQYKEKIEKIKEALPHVAI 295
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TD+I GFPGET+E F T + I+E F ++H+ + R GTPAAR +VP V K+R
Sbjct: 296 TTDVIVGFPGETEEMFQNTYDYIREIGFAELHVFPYSKRTGTPAARFPNQVPEEVKKERV 355
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAADGI----HLVGHTKGYVQVLVPSTGNML 454
L + T EG V + I E DG +VG++ Y+++ + ++
Sbjct: 356 DRLLELNRELTLRYAKKFEGEVLEV-IPEEYYDGDPKSGKVVGYSDNYLRIAFMGSRDLF 414
Query: 455 GTSALVKI 462
G V++
Sbjct: 415 GKVCRVRL 422
>gi|427712555|ref|YP_007061179.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 6312]
gi|427376684|gb|AFY60636.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Synechococcus sp. PCC 6312]
Length = 455
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 142/453 (31%), Positives = 220/453 (48%), Gaps = 46/453 (10%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS- 116
+ + ++ TFGC N++DSE MAG L GY ++ +AD+ L NT S D K S
Sbjct: 4 SSSYHIITFGCQMNKADSERMAGILEGLGYGWVEDPNQADLILYNTCSIRDNAEHKVYSY 63
Query: 117 ----AKKP-------LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLK 160
AK+ LVVAGCV Q R + EL+ I+G Q +R+ E++ +
Sbjct: 64 LGRQAKRKQENPNLKLVVAGCVAQQEGEALLRRMPELD--LIMGPQYANRLDELLAQVES 121
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVES 218
G +V ++ D+ K RR V +NV GC CTYC RG S T ++
Sbjct: 122 GLQVVATEPVEI-MEDITKPRRESTVTAW-VNVIYGCNERCTYCVVPGTRGIEQSRTPQA 179
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTM 270
+ + + A G KE+ L ++ AYGRD+ G+ N L + ++P G
Sbjct: 180 IKAEIEELAAQGYKEITLLGQNIDAYGRDLPGISPEGRRQNTLTDLLYTIHDVP--GIER 237
Query: 271 LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
+R ++P + E L + L P V H+P QSG + +L AM R YT + +++
Sbjct: 238 IRFATSHPRYFTERLIQACAEL--PKVCEHFHIPFQSGDNDILKAMARGYTREKYLRIIE 295
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK 389
T+ VP ++ D+I GFPGET F +T+ L++ F ++ + + PRPGTPAA
Sbjct: 296 TIRRYVPDAALSADVIVGFPGETPAQFERTLELVEMIGFDLLNTAAYSPRPGTPAALWSN 355
Query: 390 KVPSAVVKKRSRELTSVF-----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYV 443
+VP A+ +R ++L + E YL GRVE I + + D ++G T+G
Sbjct: 356 QVPEAIKDERLQQLNDLVGRQAAERSARYL---GRVEEILVEAVNPRDSSQVMGRTRGNR 412
Query: 444 QVLVPSTGNML-GTSALVKITSVGRWSVFGEVI 475
+P L G V+IT+ +S+ G +I
Sbjct: 413 LTFLPGDIQTLRGQLVSVEITTTRPFSLTGTLI 445
>gi|261416782|ref|YP_003250465.1| radical SAM protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|385791613|ref|YP_005822736.1| radical SAM domain-containing protein [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373238|gb|ACX75983.1| Radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327266|gb|ADL26467.1| radical SAM domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 467
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 171/335 (51%), Gaps = 28/335 (8%)
Query: 120 PLVVAGCVPQGSRD--LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDL 177
P+ + GC P+ R+ L+ + V ++++D + ++ + ++ R D
Sbjct: 104 PIYITGCAPKDFREEALRTVPHVQFTSLKELDASAILPTQSAQSPSSQINARTP----DS 159
Query: 178 PKVRRN-----KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
K RN FV I+ I GCL AC +C T +G L S+ +++V +V+ ++ DG
Sbjct: 160 NKASRNVLRESPFVGIVNIEEGCLDACAFCSTHLVKGRLHSFAPQTIVDQVQALVDDGCL 219
Query: 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292
E+ L+ +D YG DIG NL L I+ + +G+ +R+GM NP +L + + +
Sbjct: 220 EIQLTGQDCACYGFDIGTNLAELTQRILTHV--NGNYRIRLGMGNPRHVLSYQEALLNCF 277
Query: 293 RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352
+Y F+H+PVQSGS+ VL AMNR +T D+ T+ E ++TD+I G+PGE
Sbjct: 278 TDDRIYKFIHIPVQSGSENVLKAMNRRHTARDYATLAHAFTERFRKFTLSTDLIVGYPGE 337
Query: 353 TDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK-----KRSRELTSVF 407
T DFN T+ L+KE + +I++F RPGT AAR++ + V +RS L F
Sbjct: 338 TAADFNDTLTLLKETRPTVCNITRFVTRPGTVAARLETASNQAVSDDIKHERSAILAEAF 397
Query: 408 EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGY 442
+ + +E R WI D +V GY
Sbjct: 398 Q----QIALEN--NREWI----GDECTVVTEKPGY 422
>gi|21224132|ref|NP_629911.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
coelicolor A3(2)]
gi|81344644|sp|O69963.1|MIAB_STRCO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|2995295|emb|CAA18324.1| conserved hypothetical protein SC4H2.08 [Streptomyces coelicolor
A3(2)]
Length = 505
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 186/375 (49%), Gaps = 23/375 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTQSAMDTLIAKC 114
GT T ++T+GC N DSE ++G L GY A +AD+ + NT + + K
Sbjct: 12 GTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKL 71
Query: 115 ---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 159
K A +P + V GC+ Q RD +K V +V G I ++ ++E
Sbjct: 72 YGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131
Query: 160 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
++ V ++A+GV E+ L ++ AYG DIG + + A DG +R +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNIDGLERVRFTSPH 250
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + + IA + P LH+P+QSGSD VL AM R Y + +++ + +P
Sbjct: 251 PRDFTDDV--IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIP 308
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVV 368
Query: 397 KKRSRELTSVFEAFT 411
++R L ++ E +
Sbjct: 369 QERYERLVALQEEIS 383
>gi|448327532|ref|ZP_21516856.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
gi|445617779|gb|ELY71371.1| MiaB-like tRNA modifying enzyme [Natrinema versiforme JCM 10478]
Length = 417
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 211/407 (51%), Gaps = 36/407 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D +EEAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHYRVDGAEEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + DL I G + + E + + G ++LH ++P +
Sbjct: 59 RRAEELADETADL------FITGCMALAQGEEFAQADVDG---QVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TK A G + S ++ V + R +I G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKQATGKIDSPSIVENVAKARALIHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+ ++ +DTG YG D G L + E+ +G +R+GM NP + +E+A+V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEEICEI--EGDFRVRVGMANPKGVHGIREELADV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDSALDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA +K + + K+RS+E++
Sbjct: 288 TETDHDHAQSMALLRETRPEKINVTRFSKRPGTDAAELKGLGGTIKKERSKEMSEVKREI 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
V +A+ +G E R + + + + AD + Y Q++V + +
Sbjct: 348 VADAYADMVG-ETREDVLVVEDGTADSVKC--RDSAYRQIIVQNASD 391
>gi|238927480|ref|ZP_04659240.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
43531]
gi|238884762|gb|EEQ48400.1| tRNA 2-methylthioadenine synthetase [Selenomonas flueggei ATCC
43531]
Length = 437
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 208/448 (46%), Gaps = 57/448 (12%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC N +D+E M GQL A GY T+ + +AD+ LINT ++A D + K KK
Sbjct: 10 YGCQMNIADAERMEGQLQAAGYVRTEETADADVILINTCCVRETAEDKVYGKIGEIKKVK 69
Query: 120 ---PLVV---AGCVPQ--GSRDLKELEGVSIV----GVQQIDRVVEVVEETLKGHEVRLL 167
P ++ GC+ Q G ++ + V VQ++ R+V +
Sbjct: 70 ERHPQLIFGITGCMAQKEGENLMRRAPHIDFVLGTGKVQELGRIVAEIAA---------- 119
Query: 168 HRKKLPALD-----------LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
K+ P +D LP R +PI GC CTYC + RG S
Sbjct: 120 --KRTPVVDVALDARAVEEHLPIARSGTLSAWVPIMYGCNNYCTYCIVPYVRGRERSRMP 177
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGM 275
E +V VR ADG +EV L ++ +YG+D G + LL + A +G +R
Sbjct: 178 EEVVAEVRRAAADGYREVTLLGQNVNSYGKDHGQADFADLLRMVDA---VEGIRRVRFMT 234
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
++P I + L + + H C +H+PVQ GS+ +L AMNR YT+ +R + E
Sbjct: 235 SHPKDISDKLIDTIKNGTHIC--EHIHLPVQYGSNRILKAMNRVYTVEQYRERARRVREA 292
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 394
+PG + TD+I GFPGET+EDF +T++ ++E ++ + + R GTPAA M +VP
Sbjct: 293 LPGASLTTDLIVGFPGETEEDFAETLDFLREMRYDAAYTFLYSKRSGTPAAAMAAQVPDE 352
Query: 395 VVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVP 448
V R L +V + + EG R E+ +G G T+ VL P
Sbjct: 353 VKHARLERLMAVQNEISRAIN-EGL--RSAQAEVMVEGASKNDPAVWSGRTRTNKIVLFP 409
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVIK 476
+G VKIT W + GEV++
Sbjct: 410 HGAERVGDFVQVKITQPQTWVLKGEVVR 437
>gi|188585813|ref|YP_001917358.1| MiaB family RNA modification protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350500|gb|ACB84770.1| RNA modification enzyme, MiaB family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 446
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 135/439 (30%), Positives = 206/439 (46%), Gaps = 34/439 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTD-NSEE---ADIWLINTQSAMDTLIAKCKSAKKP 120
TFGC NQ DSE + G+ ++D N +E D+ +INT + K + +
Sbjct: 11 TFGCKVNQYDSEALKELFQDRGFEISDWNPQELDNIDVAIINTCTVTHLADRKARQHIRK 70
Query: 121 L---------VVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL--- 166
L V GC PQ + +K LEGV IV G++ +VE+VE+ L +
Sbjct: 71 LKRRNPNCVIAVTGCYPQTDPQTVKALEGVDIVHGIEDRSGLVELVEQALSKENIWQGAI 130
Query: 167 -LHRKKLPALDLPKVRRNKFVE------ILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
LH + P + ++ F + L I GC C+YC +ARGHL S E +
Sbjct: 131 HLHDSR-PKGEFENLKIKNFKKHDRTRHFLKIQEGCDQFCSYCIIPYARGHLRSRPPEDV 189
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ ++ +++G KE+ L+ + GAYGR+ NLP L + + G +R+ P
Sbjct: 190 ISEIKQAVSNGFKEIVLTGINLGAYGRE-NSNLPNLATLLDKIIHLKGDYRIRLSSCEPQ 248
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
I L E+ C + LH+P+QSG + +L AMNR+Y+ D+R +V E P +
Sbjct: 249 EITIGLLELVTNSEKICKH--LHIPLQSGDNEILKAMNRDYSKEDYRKIVMAAREKSPSI 306
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
I TDII GFPGE+ F T +K+ F +HI Q+ PR TPA +V S K
Sbjct: 307 AITTDIIVGFPGESANHFRNTKEFVKKIGFSDIHIFQYSPRKNTPAQEFSDQVHSKEKKA 366
Query: 399 RSRELTSVFEAFTPYLGMEGRVER---IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLG 455
RS+EL + + + E +++ + + + D V T V V S N+
Sbjct: 367 RSQELIEISRDLS-RVYHEQFIDKTVPVLVEKHEEDVASGVSDTYLKVTFNVESEINLYN 425
Query: 456 TSALVKITSVGRWSVFGEV 474
V+I S V+GE+
Sbjct: 426 KICQVQINSADEEMVYGEL 444
>gi|157693043|ref|YP_001487505.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
gi|157681801|gb|ABV62945.1| 2-methylthioadenine synthetase [Bacillus pumilus SAFR-032]
Length = 453
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 223/455 (49%), Gaps = 38/455 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY + +AD+++INT + +T K + +
Sbjct: 4 TVAFHTLGCKVNHYETEAIWQLFKEAGYERKEYESKADVYVINTCTVTNTGDKKSRQVIR 63
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ V GC Q S ++ + GV IV G Q +++ +EE + +
Sbjct: 64 RAIRHNPDGVICVTGCYAQTSPAEIMAIPGVDIVVGTQDRHKLLGYIEEFRRERQPINGV 123
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + LD+P ++ L I GC CT+C ARG L S E ++ +
Sbjct: 124 GNIMKARVFEELDVPAFT-DRTRASLKIQEGCNNFCTFCIIPWARGLLRSRDPEEVINQA 182
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ N LL + + +G +RI I
Sbjct: 183 QQLVDAGYKEIVLTGIHTGGYGEDLKDYNFAKLLKELDERV--NGLKRIRISSIEASQIT 240
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + E+ + ++RH LH+P+QSGS+ VL M R+YT+ F + L + +PG
Sbjct: 241 DEVIEVLDQSDKIVRH------LHIPLQSGSNTVLKRMRRKYTMEFFAERLTKLKKALPG 294
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVK 397
+ + +D+I GFPGET+E+F +T N +K+++F ++H+ + R GTPAARM+ +V V
Sbjct: 295 LAVTSDVIVGFPGETEEEFLETYNFVKDHQFSELHVFPYSKRTGTPAARMEDQVDENVKN 354
Query: 398 KRSRELTSVFEAFTPYL--GMEGRVERIWITEI--AADGIH--LVGHTKGYVQVLVPSTG 451
+R L ++ + EG V I E +G H VG+T Y++V+ T
Sbjct: 355 ERVHRLIALSDQLAKEYASAYEGDVLEIIPEESFKEQEGKHNLYVGYTDNYMKVVFEGTE 414
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVD-DKI 485
+M+G VKIT G G+ ++I ++V DK+
Sbjct: 415 DMIGRLVKVKITKAGYPYNEGQFVRISDEVQTDKV 449
>gi|358061030|ref|ZP_09147714.1| hypothetical protein SS7213T_12252 [Staphylococcus simiae CCM 7213]
gi|357256483|gb|EHJ06847.1| hypothetical protein SS7213T_12252 [Staphylococcus simiae CCM 7213]
Length = 448
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 131/446 (29%), Positives = 214/446 (47%), Gaps = 28/446 (6%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T+ T GC N ++E + Y D AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEEDYERVDFETNADVFVINTCTVTNTGDKKSRQIIR 62
Query: 117 ---AKKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ E+ GV +V G Q +++ +EE K +
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIEEFRKERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ +K LD+P ++ L I GC CT+C ARG + S E +V +
Sbjct: 123 GNIMKNRKYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ G KE+ L+ TG YG+D+ NL LL + DG +RI +
Sbjct: 182 TQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLET---IDGLERIRISSIEASQLT 238
Query: 283 EHLKEIAEVLRHPC-VYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ E+ +VL H V LH+P+QSGSD VL M R+YT+ F + L +P + +
Sbjct: 239 D---EVIDVLEHSTKVVRHLHIPLQSGSDTVLKRMRRKYTMERFSERLTKLHHALPDLAV 295
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T + I ++KF ++H+ + PR GTPAARM ++ + +R
Sbjct: 296 TSDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERV 355
Query: 401 RELTSVFEAFTPYLGMEGRVERIWITEIAADGIH--LVGHTKGYVQVLVPSTGNMLGTSA 458
+L ++ + E + + A I LVG+ Y++V +++G
Sbjct: 356 HKLITLSNQLGKEYASKFDQEVLEVIPEEAGEIDGTLVGYADNYMKVQFEGDESLIGQIV 415
Query: 459 LVKITSVGRWSVFGEVIKILNQVDDK 484
VKIT G+VIK+++ +K
Sbjct: 416 KVKITKADYPINIGQVIKVVDHASNK 441
>gi|254411897|ref|ZP_05025673.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coleofasciculus
chthonoplastes PCC 7420]
gi|196181619|gb|EDX76607.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Coleofasciculus
chthonoplastes PCC 7420]
Length = 451
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 136/447 (30%), Positives = 218/447 (48%), Gaps = 38/447 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ +A + L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNDASLILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 -------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
A L+VAGCV Q G L+ + + +V G Q +R+ +++E+ G+++
Sbjct: 69 AKRKQEQADLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLKDLLEQVGDGNQIVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ K RR+ V +NV GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHI-VEDITKPRRDSTVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMA 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G KE+ L ++ AYGRD+ G + L + + V ++P +R +
Sbjct: 187 ELGQQGYKEITLLGQNIDAYGRDLPGVTESGRHQHTLTDLLYYVHDVP--SIERIRFATS 244
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + E L + L P V H+P QSG + +L AM R YT +R ++DT+ + +
Sbjct: 245 HPRYFTERLIRACKEL--PKVCEHFHIPFQSGDNDILKAMARGYTQEKYRRIIDTIRDYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+ F T+ L+++ +F Q++ + + PRPGTPAA + S V
Sbjct: 303 PDASISADAIVGFPGETEAQFENTLKLVEDIEFDQLNTAAYSPRPGTPAALWENQLSEEV 362
Query: 397 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
K +R L S+ A GR+E + + + D ++G T+G
Sbjct: 363 KSDRLQRLNHLVSIKAAARSQRYF-GRIEEVLVEDQNPKDSSQVMGRTRGNRLTFFSGDI 421
Query: 452 NML-GTSALVKITSVGRWSVFGEVIKI 477
N L G VKIT V +S+ GE + +
Sbjct: 422 NQLKGQLVKVKITEVRAFSLTGEALTL 448
>gi|160947755|ref|ZP_02094922.1| hypothetical protein PEPMIC_01690 [Parvimonas micra ATCC 33270]
gi|158446889|gb|EDP23884.1| tRNA methylthiotransferase YqeV [Parvimonas micra ATCC 33270]
Length = 443
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 210/435 (48%), Gaps = 30/435 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ ++E M GY + + ++ D+++INT + + I++ K
Sbjct: 15 TLGCKVNQYETEAMQELFKKRGYEICNENDICDVYVINTCTVTNLSDRKSRQFISRAKKL 74
Query: 118 KKP--LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLLHR-KK 171
K L V GC Q + D + +E V I+G + R+VE+ EE+ K + + ++ K
Sbjct: 75 NKDAILAVVGCYSQVAPDEISAIEDVDVIIGTKNRARIVELCEESKKSNLKFNIVSELTK 134
Query: 172 LPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
D+ + + +K + I GC CTYC +ARG + S ++ + + +
Sbjct: 135 DCGFDVLSIENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRPIDDIYEEAVKLANN 194
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAI-----VAELPPDGSTMLRIGMTNPPFILEH 284
G KEV ++ G+YG D+G N L++ I + L + + G+ + F++
Sbjct: 195 GYKEVIITGIHVGSYGLDLG-NDTRLIDVIEKLSTIENLDRIRLSSIEAGIISEDFLI-R 252
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
LK +V H H+ +QSG D +L MNR YT +R V + E+ P + + TD
Sbjct: 253 LKNCKKVCEH------FHLSLQSGCDKILKLMNRRYTADMYRKKVRMIKEIFPNVALTTD 306
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSREL 403
II GFPGE DEDF +T+N +KE F ++H+ ++ R GTPA K+ VKK RS EL
Sbjct: 307 IIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAFDFKEQVDGNVKKFRSNEL 366
Query: 404 TSVFEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ + T +L E + + E +G LVG+T+ Y++ P +M
Sbjct: 367 ILLAKDMTTEFLKKELSEKHEVLFEENINGNRLVGYTRNYIRFSAPYNEDMKNKVVYCNG 426
Query: 463 TSVGRWSVFGEVIKI 477
SV +FG KI
Sbjct: 427 ISVEGEEIFGLASKI 441
>gi|410668430|ref|YP_006920801.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
gi|409106177|gb|AFV12302.1| methylthiotransferase YqeV [Thermacetogenium phaeum DSM 12270]
Length = 461
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 138/462 (29%), Positives = 215/462 (46%), Gaps = 65/462 (14%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK----- 115
+ T GC NQ ++ + G+ + D ++AD+++INT + T KC+
Sbjct: 18 VAFYTLGCKVNQQETASLMKLFRKRGFRVVDFKKDADVYIINTCAVTHTAAQKCRQVIRR 77
Query: 116 ----SAKKPLVVAGCVPQ-GSRDLKELEGVS-IVGVQQIDRVVEVVEETLKGHEVR---- 165
S + V GC Q + ++ + GV +VG R+VE+V E ++
Sbjct: 78 AIGRSPAAVVAVLGCYSQVAAEEVLSIPGVDLVVGTSGRSRLVELVSEAMEKKRSGEWPA 137
Query: 166 -----------LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
L ++LP D P+ R L I GC CTYC +ARG + S
Sbjct: 138 KGINAVEALDGSLDFEQLPLPDDPRRTR----AFLKIEDGCDQFCTYCTVPYARGGVRSL 193
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLR 272
+ + R+ ++ G +EV L+ T AYG+D+G VNLP LL +V ELP G+ +R
Sbjct: 194 HPDLVQERLSELVCAGYREVVLTGVHTSAYGKDLGGGVNLPRLLRELV-ELP--GNFRIR 250
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+ P + E L E+ P + LH+P+QSG D +L MNR YT ++R +
Sbjct: 251 LSSVEPAEVTEELLELLAT--SPRLCRHLHIPLQSGDDEILCRMNRPYTAEEYRKLFHLA 308
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM---- 388
E++PG+ I TD++ GFPGE + F T NLI F +H+ ++ PRPGTPAA M
Sbjct: 309 REMIPGIAITTDVLVGFPGEEERHFQNTFNLIATLPFRDLHVFKYSPRPGTPAAAMPEQV 368
Query: 389 ----KKVPSAVVKKRSRELTSVF------EAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
K S+ +++ + EL + F E T + R + W G
Sbjct: 369 APPVKDRRSSCLRRLADELAASFARRFVGETMTVLVERRSRKRQGWWE----------GL 418
Query: 439 TKGYVQVLVPST---GNMLGTSALVKITSVG-RWSVFGEVIK 476
T Y++V P++ + G V+I VG R + GE ++
Sbjct: 419 TDNYLRVFFPASQRKSGVRGEFVPVRILEVGPRDELQGEAVE 460
>gi|428769245|ref|YP_007161035.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
gi|428683524|gb|AFZ52991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Cyanobacterium aponinum
PCC 10605]
Length = 451
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 128/442 (28%), Positives = 212/442 (47%), Gaps = 30/442 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS-----A 117
+ TFGC N++DSE MAG L G+ T++ +A + + NT + D K S A
Sbjct: 10 ITTFGCQMNKADSERMAGILENMGFEFTEDPNQAKVLVYNTCTIRDNAEQKVYSYLGRQA 69
Query: 118 KKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 167
K+ LVVAGCV Q G + L+ + + +V G Q +R+ ++E+ G+++
Sbjct: 70 KRKHQEPDLTLVVAGCVAQQEGEQLLRRVPELDLVMGPQHANRLDSLLEQVFAGNQIVAT 129
Query: 168 HRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+ D+ K RR V + I GC C+YC + RG S T E++ + +
Sbjct: 130 EPIHIYE-DITKPRRESEVSAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIKAEIEEL 188
Query: 227 IADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
G KE+ L ++ AYGRD+ G + L + + +G +R ++P +
Sbjct: 189 AKQGYKEITLLGQNIDAYGRDLPGVTETGRHKHTLTDLLYYIHDIEGIERIRFATSHPRY 248
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
E L I P V H+P QSG + +L AM R YT +R ++ + E +P
Sbjct: 249 FTERL--IKACYELPKVCEHFHIPFQSGDNEILKAMKRGYTHERYRDIIAKIREYMPDAA 306
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
I+ D I GFPGET+E F T+ L+++ F Q++ + + PRP TPAA + ++ R
Sbjct: 307 ISADAIVGFPGETEEQFQNTLKLVEDIGFDQLNTAAYSPRPNTPAAEWENQIDEQEKSDR 366
Query: 400 SRELTSV--FEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YVQVLVPSTGNMLG 455
+ L + +A L + R+E + + +I D ++G T+G + + + G
Sbjct: 367 LQRLNHLVAIKAGERSLRYQDRIEEVLVEDINPKDTTQVMGRTRGNRLTFFAGNLAELKG 426
Query: 456 TSALVKITSVGRWSVFGEVIKI 477
VKIT V +S+ G + +
Sbjct: 427 KVVSVKITEVRAFSLTGNALSL 448
>gi|331697733|ref|YP_004333972.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Pseudonocardia dioxanivorans CB1190]
gi|326952422|gb|AEA26119.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Pseudonocardia dioxanivorans CB1190]
Length = 490
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 124/396 (31%), Positives = 194/396 (48%), Gaps = 37/396 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC--- 114
T + ++T+GC N DSE MAG L + GY + +++AD+ ++NT + + K
Sbjct: 2 TRSYTIRTYGCQMNVHDSERMAGLLESAGYVRAEATDDADVVVLNTCAVRENADNKLYGN 61
Query: 115 ------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+ A +P + V GC+ Q RD + + V +V G + + ++E
Sbjct: 62 LGHLAPRKAARPGMQIAVGGCLAQKDRDTIVAKAPWVDVVFGTHNVGALPTLLERARHNE 121
Query: 163 EVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+ R+ L LP R + + + I+VGC CT+C RG ++
Sbjct: 122 RAEVEIRESLEVFPSTLPARRESAYAGWVSISVGCNNTCTFCIVPSLRGKERDRRPGDVL 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRIGMTNP 278
V + ADGV EV L ++ AYG + G LL A D + R+ T+P
Sbjct: 182 AEVSALAADGVLEVTLLGQNVNAYGVEFGDREAFSKLLRAC-----GDVEGLERVRFTSP 236
Query: 279 PFILEHLKE-----IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
H +E IA + P V LH+P+QSGSD VL M R Y S F ++D +
Sbjct: 237 -----HPREFSSDVIAAMAETPNVCPQLHMPLQSGSDRVLREMRRSYRSSRFLAILDEVR 291
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 392
+P I+TDII GFPGET+EDF T+++++ +F Q Q+ PRPGTPAA + ++P
Sbjct: 292 GSIPDAAISTDIIVGFPGETEEDFRATLDVVERARFAQAFTFQYSPRPGTPAATLPDQLP 351
Query: 393 SAVVKKRSRELTSVFE--AFTPYLGMEGRVERIWIT 426
AVV++R L + E ++ +EGRV + ++
Sbjct: 352 KAVVQERYERLVELQERISWEQNRALEGRVVEVLVS 387
>gi|366162298|ref|ZP_09462053.1| RNA modification protein [Acetivibrio cellulolyticus CD2]
Length = 477
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/441 (27%), Positives = 220/441 (49%), Gaps = 32/441 (7%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------------QSA 106
Y+ TFGC N+ DSE +AG L GY+ ++ +E+D+ + NT A
Sbjct: 43 FYLATFGCQMNEHDSEKLAGMLGEMGYSECEDMDESDLIIFNTCCVRENAELKVYGHLGA 102
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKG 161
M L K K+ + + GC+ Q ++ ++ V I G + + E++ +
Sbjct: 103 MKHL--KEKNPDMIIAMCGCMMQQPEVVEHIKKVYRQVDLIFGTHNLYKFPELLFSAINS 160
Query: 162 HE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
++ + ++ L A ++P R+++ + + GC C+YC + RG S +E++
Sbjct: 161 NKTVIDIMDSIGLIAEEMPIERKDEVKAWVTVMYGCNNFCSYCIVPYVRGRERSRYIENI 220
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNP 278
V VR + G+KE+ L ++ +YG+D+G + ++ EL +G +R ++P
Sbjct: 221 VDEVRMLGRQGLKEITLLGQNVNSYGKDLGNDTT--FAKLLGELNEVEGIERIRFMTSHP 278
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + L L C + LH+P QSGS +L MNR+Y+ D+ +++ + +PG
Sbjct: 279 KDLSDELIFAMRDLNKVCEH--LHLPFQSGSTRILKEMNRKYSKEDYLNLLEKVKINIPG 336
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MKKVPSAVVK 397
+ + +DII GFPGET+EDF T++++++ +F Q++ + R GTPAA+ + +VP V K
Sbjct: 337 ISLTSDIIVGFPGETEEDFQDTLDVVEKGRFDQIYSFLYSKRTGTPAAKSVDQVPEEVKK 396
Query: 398 KRSRELTSVFEAFTPYLG---MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+R + L V + + ++ +E + E + G T+ V M+
Sbjct: 397 ERFQRLMEVQNRISNEINHEYLDKEIEVLVEGESKTNDKIYTGRTRENKIVNFDGNSEMI 456
Query: 455 GTSALVKITSVGRWSVFGEVI 475
G VKI +V WS+ G+V+
Sbjct: 457 GKLVRVKIDTVKTWSLEGKVL 477
>gi|52425745|ref|YP_088882.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Mannheimia
succiniciproducens MBEL55E]
gi|81386786|sp|Q65RW3.1|MIAB_MANSM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|52307797|gb|AAU38297.1| MiaB protein [Mannheimia succiniciproducens MBEL55E]
Length = 474
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 228/453 (50%), Gaps = 37/453 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT-------QSAMDT 109
T+ +++KT+GC N+ DS MA L S G LT+ +E+AD+ L+NT Q +
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLQSTHGLELTEEAEQADVLLLNTCSIREKAQEKVFH 61
Query: 110 LIAKCKSAKKP-----LVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+ + K KK + V GCV +G + V I+ G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKKNPNLVIGVGGCVASQEGEHIRERAPYVDIIFGPQTLHRLPEMINQIRAG 121
Query: 162 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
+ L + ++ D LP+ + + I GC CTYC + RG S ++ +
Sbjct: 122 EKAVLDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPLDDV 181
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
+ + + GV+EV L ++ AY D G+ L +VA + DG LR +
Sbjct: 182 LFEIAQLAEQGVREVNLLGQNVNAYRGPTHDGGICSFAELLRLVAAI--DGIDRLRFTTS 239
Query: 277 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
NP +E +I +V R P + SFLH+PVQ+GSD +L+ M R +T ++++++ L +
Sbjct: 240 NP---IEFTDDIIDVYRDTPELVSFLHLPVQAGSDRILTMMKRGHTAIEYKSIIRKLRAV 296
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
P +QI++D I GFPGET+E+F QT+NLI++ F + RPGTPAA M P V
Sbjct: 297 RPNIQISSDFIVGFPGETNEEFEQTMNLIQQVNFDMSFSFVYSARPGTPAADM---PDDV 353
Query: 396 VKKRSRELTSVF------EAFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVP 448
++ ++ + +A M G +R+ + + D + L G T+ V
Sbjct: 354 TEEEKKQRLYILQQRINNQAAQFSRAMLGTEQRVLVEGPSKKDIMELTGRTENNRIVNFA 413
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVIKILNQV 481
T +M+G +KIT V S+ G+V++ +Q+
Sbjct: 414 GTPDMIGKFVDIKITDVFTNSLRGDVVRTEDQM 446
>gi|217967463|ref|YP_002352969.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Dictyoglomus
turgidum DSM 6724]
gi|217336562|gb|ACK42355.1| RNA modification enzyme, MiaB family [Dictyoglomus turgidum DSM
6724]
Length = 441
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 225/441 (51%), Gaps = 40/441 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC------ 114
T+GC N+SDSE +AG L + GY ++ EEAD+ L+NT + A + + K
Sbjct: 8 TYGCQMNKSDSEKVAGILESLGYIPSEKMEEADLILLNTCSVRERAEEKVFGKLGELRKL 67
Query: 115 --KSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 169
K+ K + + GC+ Q ++ +++ V V G + + +V+E +L + +++
Sbjct: 68 KKKNQKLLIGIFGCMAQRMKEELIEKFPHVDFVLGSYKFTELPKVLE-SLNDNNKKIVLA 126
Query: 170 KKLPA---LDLPKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ P +D +RR NKF +PI GC CTYC + RG S + ++ +
Sbjct: 127 EDNPKPEEVDFRIIRRENKFQAWIPIIYGCNNFCTYCIVPYLRGKEKSRDPQEIIKEIEH 186
Query: 226 VIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
+ GV EV L ++ +YG+D+G V+L LL I ++P G +R ++P + +
Sbjct: 187 LANQGVVEVTLLGQNVDSYGKDLGNVDLADLLVEI-HKIP--GIKRIRFLTSHPRDVSDK 243
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L I V HP + H+P+Q+GSD +L M R YT ++++ +++ + +P +TD
Sbjct: 244 L--INVVATHPKICPHWHLPLQAGSDRILRRMGRGYTYNEYKALIEKIRAKIPRASFSTD 301
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK-VPSAVVKKRSREL 403
II GFPGE +EDF T ++E KF V+++ + RPGTPAA VP KK EL
Sbjct: 302 IIVGFPGEEEEDFLATRRALEEIKFDTVNLAIYSKRPGTPAASYDDPVPYETKKKWFDEL 361
Query: 404 TSVFEA--FTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLG 455
++ + L M G+ E + A+G++ L G T+ Y V + ++G
Sbjct: 362 ENLQRKIIYERNLSMIGKEEL-----VLAEGVNPKNPKELSGRTENYRLVFFEADRKLIG 416
Query: 456 TSALVKITSVGRWSVFGEVIK 476
LV+I WS+ GE I+
Sbjct: 417 KFLLVRIIEARLWSLRGEAIR 437
>gi|169827222|ref|YP_001697380.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Lysinibacillus
sphaericus C3-41]
gi|229890559|sp|B1HR59.1|MIAB_LYSSC RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|168991710|gb|ACA39250.1| UPF0004 protein [Lysinibacillus sphaericus C3-41]
Length = 514
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 129/447 (28%), Positives = 215/447 (48%), Gaps = 36/447 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT---------- 109
T Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NT + +
Sbjct: 69 TFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELG 128
Query: 110 --LIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
L K K+ + + V GC+ Q ++ L+ V +V G I R+ +++E
Sbjct: 129 FLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAYMSK 188
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 189 EMVVEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + A G +E+ L ++ AYG+D ++ L ++ L +R ++P
Sbjct: 249 AEVRELAAAGYQEIMLLGQNVNAYGKDFE-DIEYRLGDLMDALRKIDIPRIRFTTSHPRD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+HL E+ + + + +H+PVQSGS+ +L M R+YT F T+V+ + +P +
Sbjct: 308 FDDHLIEV--LAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIKAAIPEVT 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
+ TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVPEEVKKER 425
Query: 400 SRELTSVFEAFTPYLGMEGRVERI--WITEIAADGIH------LVGHTKGYVQVLVPSTG 451
+ L V ++ +ER+ + E+ +G L G+T+ V
Sbjct: 426 LQRLNEVVGEYS-----RKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKGPA 480
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKIL 478
++G VKI +S+ GE ++++
Sbjct: 481 EVIGQLVKVKIIETTSYSLTGEFLEVV 507
>gi|448491553|ref|ZP_21608393.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
gi|445692553|gb|ELZ44724.1| MiaB-like tRNA modifying enzyme [Halorubrum californiensis DSM
19288]
Length = 444
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 134/433 (30%), Positives = 210/433 (48%), Gaps = 36/433 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D ++AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKL 172
+ LVV GC+ ++ V +I EV L G E +
Sbjct: 63 ELSETTAELVVTGCMALAQGEMFAEADVD----AEILHWDEVPTYVLNG-ECPTVTPDAE 117
Query: 173 PALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G K
Sbjct: 118 PVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGAK 170
Query: 233 EVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
E+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+V
Sbjct: 171 EIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGDFRVRLGMANPGGIHGIHEELADV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y F+H PVQSGSD VL M R++ + FR VV+T E + ++TD I GFP
Sbjct: 228 FAENEELYDFVHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDERLDHWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
E + D ++++L+ E ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 288 TEDEADHERSMDLLAEVSPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKMEV 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVKI 462
V EA+ +G E + + E D + Y Q++V G +G V++
Sbjct: 348 VGEAYESMVGE--TFEVLVVEEGTGDSVKC--RDGAYRQIIVQGATDRGVAVGDFLTVEV 403
Query: 463 TSVGRWSVFGEVI 475
T FG+ +
Sbjct: 404 TGHNTVYAFGDPV 416
>gi|343521071|ref|ZP_08758039.1| MiaB-like protein [Parvimonas sp. oral taxon 393 str. F0440]
gi|343396277|gb|EGV08814.1| MiaB-like protein [Parvimonas sp. oral taxon 393 str. F0440]
Length = 436
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 212/435 (48%), Gaps = 30/435 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ ++E M GY + + + +D+++INT + + I++ K
Sbjct: 8 TLGCKVNQYETEAMQELFKKRGYEICNEDDISDVYVINTCTVTNLSDRKSRQFISRAKKL 67
Query: 118 KKP--LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLLHR-KK 171
K L V GC Q + D + E+E V I+G + ++V++ EE+ K + + ++ K
Sbjct: 68 NKNAILAVVGCYSQVAPDEISEIEDVDVIIGTKNRAKIVDLCEESKKSNLKFNIVSELTK 127
Query: 172 LPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
D+ + + +K + I GC CTYC +ARG + S ++ + + +
Sbjct: 128 DCGFDVLSIENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRPIDDIYEEAVKLANN 187
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAI-----VAELPPDGSTMLRIGMTNPPFILEH 284
G KEV ++ G+YG D+G ++ L++ I + L + + G+ + F++
Sbjct: 188 GYKEVIITGIHVGSYGLDLGNDIR-LIDVIEKLSTIENLDRIRLSSIEAGIISKDFLI-R 245
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
LK +V H H+ +QSG D +L MNR YT +R V + E+ P + + TD
Sbjct: 246 LKNCKKVCEH------FHLSLQSGCDKILKLMNRRYTTDMYRKKVLMIKEIFPNVALTTD 299
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSREL 403
II GFPGE DEDF +T+N +KE F ++H+ ++ R GTPA K +V V K RS EL
Sbjct: 300 IIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAYDFKDQVDGNVKKFRSNEL 359
Query: 404 TSVF-EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ E T +L E + + E +G LVG+T+ Y++ P +M
Sbjct: 360 ILLSKEMTTEFLKKELSEKHEVLFEENINGNKLVGYTRNYIRFSAPYNEDMKNKVVYCNG 419
Query: 463 TSVGRWSVFGEVIKI 477
SV +FG KI
Sbjct: 420 ISVDGEEIFGLASKI 434
>gi|395227372|ref|ZP_10405698.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter sp. A1]
gi|421843452|ref|ZP_16276612.1| tRNA-i(6)A37 methylthiotransferase [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|424728924|ref|ZP_18157529.1| adenosine trna methylthiotransferase miab [Citrobacter sp. L17]
gi|394718700|gb|EJF24321.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter sp. A1]
gi|411775173|gb|EKS58619.1| tRNA-i(6)A37 methylthiotransferase [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|422896795|gb|EKU36577.1| adenosine trna methylthiotransferase miab [Citrobacter sp. L17]
Length = 476
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 149/462 (32%), Positives = 227/462 (49%), Gaps = 39/462 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTL------ 110
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NT S +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 111 ------IAKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+ K K+ K + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 120
Query: 162 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 121 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 180
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 271
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 181 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 236
Query: 272 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
R ++P +E +I EV R P + SFLH+PVQSGSD VL+ M R +T +++ ++
Sbjct: 237 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 293
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 389
L P +QI++D I GFPGET +DF QT+ LI + F + F RPGTPAA M
Sbjct: 294 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 353
Query: 390 KVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVL 446
VP K+R L +A M G +RI + + I L G T+ V
Sbjct: 354 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 413
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN 488
T +M+G V+IT V S+ G+V++ +++ +IA +
Sbjct: 414 FEGTPDMVGKFVDVEITDVWTNSLRGKVVRTEDEMGLRIAES 455
>gi|288556902|ref|YP_003428837.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
gi|288548062|gb|ADC51945.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Bacillus
pseudofirmus OF4]
Length = 541
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 131/474 (27%), Positives = 230/474 (48%), Gaps = 31/474 (6%)
Query: 31 PKYNKNKPR-LHDNHLSKTGSLSPK----IPGTETIYMKTFGCSHNQSDSEYMAGQLSAF 85
P Y + K R D + + L P+ I +T +++T+GC N DSE MAG L+
Sbjct: 65 PDYKQGKRRGKEDVQVLRPDDLIPEPMQGIGNGKTFHIRTYGCQMNTHDSENMAGLLTEM 124
Query: 86 GYALTDNSEEADIWLINT----QSAMDTL---IAKCKSAKKP-----LVVAGCVPQG--- 130
G+ TD++++AD+ L+NT ++A + + I KS KK L V GC+ Q
Sbjct: 125 GFTETDDTKDADVILLNTCAIRENAENKVFGEIGHLKSLKKERPEVILGVCGCMSQEENV 184
Query: 131 -SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFV 186
+R +++ + + I+ G I R+ +++ + G E + + ++ ++P+ R K
Sbjct: 185 VNRIMQKHQHIDIIFGTHNIHRLPSLLQNAIYGKEMVIEVWSKEGDIVENMPRKREGKTQ 244
Query: 187 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 246
+ I GC CTYC + RG S E ++ VR + G KE+ L ++ AYG+
Sbjct: 245 AWVNIMYGCDKFCTYCIVPYTRGKERSRLPEDIIDEVRDLARQGYKEITLLGQNVNAYGK 304
Query: 247 DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 306
D+ + L ++ ++ +R ++P +HL I+ + + + +H+PVQ
Sbjct: 305 DLK-DRDYRLGHLMDDIHKIDIPRVRFTTSHPRDFDDHL--ISVLSKGGNLVEHIHLPVQ 361
Query: 307 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366
G+ +L M R+YT + + + +P TD+I GFP ET+E F T++L++E
Sbjct: 362 HGNSDILKLMARKYTREQYVELAHKIKMAIPKASFTTDLIVGFPNETEEQFEDTLSLVRE 421
Query: 367 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGR---VER 422
+F + PR GTPAA+MK VP V K+R L ++ + ++ + VE
Sbjct: 422 IEFDSAFTYIYSPREGTPAAKMKDNVPMEVKKERLARLNALVNEISAKKNLDYQDQVVEV 481
Query: 423 IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
+ E D L G T+ V +++G VK+ WS+ GE+++
Sbjct: 482 LVEGESKKDPDVLAGRTRTNRLVNFKGPKSIIGEIVYVKVNEAKTWSLTGELVE 535
>gi|414160614|ref|ZP_11416880.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
gi|410878134|gb|EKS26023.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Staphylococcus simulans ACS-120-V-Sch1]
Length = 513
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 127/442 (28%), Positives = 214/442 (48%), Gaps = 26/442 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T ++KT+GC N D+E MAG A GY L D+ +AD+ L+NT ++ + + I
Sbjct: 68 TFFIKTYGCQMNAHDTEVMAGIFEALGYTLADDMLKADVILLNTCAIRENAENKVFSEIG 127
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K K+ + V GC+ Q ++ LK + V ++ G I ++ E++EE K
Sbjct: 128 NLKHLKRDRPDCLIGVCGCMSQEESVVNKILKSFQNVDMIFGTHNIHKLPEILEEAYLSK 187
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
+ + ++ +LPKVR + F + I GC CTYC RG S E ++
Sbjct: 188 AMVIDVWSKEGDVIENLPKVRDDYFKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 247
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + G KE+ L ++ +YG+D+ ++ L + ++ +R ++P
Sbjct: 248 EEVRDLARQGYKEITLLGQNVNSYGKDLQ-DIEYGLGDLFEDIAKIDIPRVRFTTSHPWD 306
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+H+ E+ + + + +H+PVQSG+DAVL M R+YT + +V+ + +P +
Sbjct: 307 FTDHMIEV--IAKGGNIVPHIHLPVQSGNDAVLKIMGRKYTRESYLDLVNRIKAAIPDVA 364
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E +F + + R GTPAARMK V + V K+R
Sbjct: 365 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAARMKDNVATEVKKER 424
Query: 400 SRELTSVFEAFTPYL--GMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
+ L ++ EG V + D L G+T+ V +G
Sbjct: 425 LQRLNKKVGYYSERALKAYEGEVVTVLCEGSSKKDENVLAGYTEKNKLVNFRGPKEAIGQ 484
Query: 457 SALVKITSVGRWSVFGEVIKIL 478
VKI ++S+ G + I+
Sbjct: 485 LVKVKIDEAKQYSLNGTFLNIV 506
>gi|261343533|ref|ZP_05971178.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
DSM 4541]
gi|282568682|gb|EFB74217.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Providencia rustigianii
DSM 4541]
Length = 476
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 143/455 (31%), Positives = 225/455 (49%), Gaps = 39/455 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT----QSAMDTLIA--- 112
+YMKT+GC N+ DS M L S GY LTD +EEAD+ L+NT + A + +
Sbjct: 7 LYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQLG 66
Query: 113 --KCKSAKKPLV---VAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
K KKP + V GCV D + V IV G Q + R+ E++ + ++G+
Sbjct: 67 RWKFFKDKKPDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQ-IQGNRS 125
Query: 165 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ P ++ LP+ R + I GC CT+C + RG S + ++
Sbjct: 126 PIID-ISFPEIEKFDNLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCDDIL 184
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--DGSTMLRIGMTNP 278
+ + A GV+EV L ++ AY R + I A + L DG +R ++P
Sbjct: 185 FEIAQLAAQGVREVNLLGQNVNAY-RGATFDGEICSFAELLRLVASIDGIDRVRFTTSHP 243
Query: 279 PFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+E +I EV R P + SFLH+PVQSGSD +L+ M R +T +++ ++ L E P
Sbjct: 244 ---IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLREARP 300
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
G+ I++D I GFPGET EDF +T+ LI + F + + RPGTPAA +P V +
Sbjct: 301 GILISSDFIVGFPGETTEDFEKTMKLIADVNFDMSYSFVYSARPGTPAA---DLPDDVTE 357
Query: 398 KRSRELTSVF------EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPST 450
++ + +A + M G V+RI + + + L G T+ V T
Sbjct: 358 DEKKQRLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFEGT 417
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKI 485
+M+G V+I V S+ G+VI+ +Q+D ++
Sbjct: 418 PDMIGKFVDVEIVDVYTNSLRGKVIRTEDQMDLRV 452
>gi|404329066|ref|ZP_10969514.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 495
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 211/437 (48%), Gaps = 31/437 (7%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------IAKCK 115
++T+GC N++DSE MAG L A GY T+++ AD+ L+NT + + I + K
Sbjct: 54 IETYGCQMNEADSEVMAGILEAMGYRPTEDAALADVILVNTCAIRENAENRVFGHIGRMK 113
Query: 116 SAK--KPLVV---AGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE-- 163
K KP ++ GC+ Q ++ L+ V ++ G I R+ ++++E L E
Sbjct: 114 PLKLEKPGLIIGLCGCMAQEETVVNKVLRTYPQVDLIFGTHNIHRLPQLLQEALFSKEMV 173
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
V + ++ +LP R F + I GC CTYC + RG S E ++ V
Sbjct: 174 VEVWSKEGDIVENLPVARHGHFQAWVNIMFGCDKFCTYCIVPYTRGKERSRRPEEIISEV 233
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
R + G KEV L ++ AYG+D+ L ++ E+ G +R ++P +
Sbjct: 234 RDLARRGYKEVTLLGQNVNAYGKDLKDLDHYGLGNLMDEIRKIGIPRVRFMTSHPKDFDD 293
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
HL E+ + C + +H+PVQSG+ +L M R YT + + + VP T
Sbjct: 294 HLIEVLGKGGNLCEH--IHLPVQSGNSDILKIMGRGYTRERYLDLFHKIKNTVPNAAFTT 351
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRE 402
DII GFP ET+ F T++L+KE +F + + PR GTPAARMK +P V K+R +
Sbjct: 352 DIIVGFPNETEAQFEDTLSLVKECRFDGAYTFIYSPRAGTPAARMKDNIPMEVKKERLQR 411
Query: 403 LTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHTKGYVQVLVPSTGNMLGT 456
L + + + + + + + E+ +G L GHT+ V +++G
Sbjct: 412 LNRLIDQYASESNAKYQDQ---VVEVLVEGTSRKNDQVLSGHTRTNKVVNFVGPKSLIGQ 468
Query: 457 SALVKITSVGRWSVFGE 473
VKIT WS+ GE
Sbjct: 469 LVNVKITETKMWSLDGE 485
>gi|153008094|ref|YP_001369309.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
anthropi ATCC 49188]
gi|229890580|sp|A6WWX6.1|MIAB_OCHA4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|151559982|gb|ABS13480.1| RNA modification enzyme, MiaB family [Ochrobactrum anthropi ATCC
49188]
Length = 462
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 220/455 (48%), Gaps = 47/455 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL- 110
P +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A + L
Sbjct: 15 PNVRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLY 74
Query: 111 -----IAKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV---- 152
+ K K A++ + VAGCV Q G L+ V +V G Q R+
Sbjct: 75 SALGRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 134
Query: 153 -----EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 207
E V ET E + H LP+ + R+ L + GC CT+C +
Sbjct: 135 RVRSGEKVVETEYALEDKFEH---LPSPKREETRKRGVSAFLTVQEGCDKFCTFCVVPYT 191
Query: 208 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVA 261
RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ + +A
Sbjct: 192 RGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFR---LA 248
Query: 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 321
+P G LR ++P + + L LR + +LH+PVQSGSD +L AMNR +
Sbjct: 249 RIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMNRRHK 304
Query: 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 381
++ +++ + E+ P + ++ D I GFPGETD+DF T+ L+++ + Q + ++ PRP
Sbjct: 305 ADEYVRLIERIREVRPDLALSGDFIVGFPGETDQDFEDTMRLVRDVNYAQAYSFKYSPRP 364
Query: 382 GTPAARMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
GTP A + V AV +R + L ++ + + M GR + + + +VG
Sbjct: 365 GTPGADLDDHVEEAVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGR 424
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+ + V++ + + +G VKITS G S+ +
Sbjct: 425 SPWLLPVIIDDSNDRVGDIIHVKITSTGTNSLIAQ 459
>gi|172037723|ref|YP_001804224.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Cyanothece sp.
ATCC 51142]
gi|354553405|ref|ZP_08972711.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
gi|229890507|sp|B1WU96.1|MIAB_CYAA5 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|171699177|gb|ACB52158.1| tRNA-i(6)A37 modification enzyme MiaB [Cyanothece sp. ATCC 51142]
gi|353554122|gb|EHC23512.1| RNA modification enzyme, MiaB family [Cyanothece sp. ATCC 51472]
Length = 448
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 137/451 (30%), Positives = 212/451 (47%), Gaps = 50/451 (11%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ AD+ L NT + D K S
Sbjct: 11 HITTFGCQMNKADSERMAGILEDMGFKWSEDPNTADLILYNTCTIRDNAEQKVYSYLGRQ 70
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G + L+ + + +V G Q +R+ +++ + G++V
Sbjct: 71 AKRKHEHPDLTLVVAGCVAQQEGEKILRRVPELDLVMGPQHANRLQDLLTQVFDGNQVVA 130
Query: 167 LHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ K RR+ V + I GC C+YC + RG S T E++ +
Sbjct: 131 TEPIHI-VEDITKPRRDSTVTAWVNIIYGCNERCSYCVVPNVRGVEQSRTPEAIYAEMEL 189
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ G KEV L ++ AYGRD+ G + L + + G LR ++P
Sbjct: 190 LGKQGYKEVTLLGQNIDAYGRDLPGVTETGRHQHTLTDLLYQVHDISGIERLRFATSHPR 249
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ E L + L P V H+P QSG + VL AM R YT +R ++D + E +P
Sbjct: 250 YFTERLIKACHEL--PKVCEHFHIPFQSGDNDVLKAMKRGYTHEKYRHIIDKIREYMPDA 307
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA------------- 386
I+ D I GFPGET+ F T+ L+ + F Q++ + + PRPGTPAA
Sbjct: 308 SISADAIVGFPGETEAQFENTLKLVDDIGFDQLNTAAYSPRPGTPAAIWDNQLSEEIKSD 367
Query: 387 RMKKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWI-TEIAADGIHLVGHTKGYVQV 445
R++++ V +K ++ YL R+E + + E D ++G T+G
Sbjct: 368 RLQRLNHLVAQKAAQRSQR-------YL---NRIEEVLVEDENPKDNTQVMGRTRGNRLT 417
Query: 446 LVPSTGNML-GTSALVKITSVGRWSVFGEVI 475
L G VKIT V +S+ GE I
Sbjct: 418 FFEGDIEALKGQLIKVKITEVRAFSLTGEAI 448
>gi|425737412|ref|ZP_18855685.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
gi|425482760|gb|EKU49916.1| hypothetical protein C273_03440 [Staphylococcus massiliensis S46]
Length = 448
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 135/457 (29%), Positives = 226/457 (49%), Gaps = 38/457 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T+ T GC N ++E + Y D ++ AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKDADYERVDFNQNADVFVINTCTVTNTGDKKSRQIIR 62
Query: 117 ---AKKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ E+ GV IV G + R+++ +E K E
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSSAEIMEIPGVDIVVGTEGRSRLLDYIETYRKEREPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + L++P ++ L I GC CT+C ARG + S E +V +
Sbjct: 123 GNIMKNRTYEELEVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF-- 280
T++ G KE+ L+ TG YG+D+ NL LL + DG +RI
Sbjct: 182 TTLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLET---VDGLERIRISSIEASQLT 238
Query: 281 --ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
++E L++ +V+RH LHVP+QSGSD+VL M R+Y+++ F + L E +PG
Sbjct: 239 DEVIEVLQQSTKVVRH------LHVPLQSGSDSVLKRMRRKYSMAHFSERLTKLHEALPG 292
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ + +D+I GFPGET+E+F QT + I ++ F ++H+ + PR GTPAARM +V V
Sbjct: 293 LAVTSDVIVGFPGETEEEFQQTYDFIVDHHFSELHVFPYSPRIGTPAARMDDQVDEEVKN 352
Query: 398 KRSRELTSVFEAFTPYLGM---EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+R L ++ + +E I + + DGI LVG+ Y++V +++
Sbjct: 353 ERVHRLINLSNQLAKQYASKFDQDVLEVIPEEKGSHDGI-LVGYADNYMKVEFDGDESLI 411
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRI 491
G VKIT G++++++ ++ SN+ +
Sbjct: 412 GELVKVKITEPNYPINKGQLLRVVEHATNQ--SNKEV 446
>gi|223044509|ref|ZP_03614536.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
gi|222442106|gb|EEE48224.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
SK14]
Length = 514
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 219/444 (49%), Gaps = 34/444 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINT ++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 400 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAA--DGIHLVGHTKGYVQVLVPSTGN 452
+ L +A + Y EG++ + + E A+ D L G+T V +
Sbjct: 426 LQRLNKKVGEYSQKAMSKY---EGKIVTV-LCEGASKKDDTVLAGYTDKNKLVNFKAPKE 481
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
M+G VKI ++S+ G +K
Sbjct: 482 MIGKLVDVKIDEAKQYSLNGTFVK 505
>gi|335047513|ref|ZP_08540534.1| tRNA methylthiotransferase YqeV [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333761321|gb|EGL38876.1| tRNA methylthiotransferase YqeV [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 436
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 210/435 (48%), Gaps = 30/435 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ ++E M GY + + ++ D+++INT + + I++ K
Sbjct: 8 TLGCKVNQYETEAMQELFKKRGYEICNENDICDVYVINTCTVTNLSDRKSRQFISRAKKL 67
Query: 118 KKP--LVVAGCVPQGSRD-LKELEGVS-IVGVQQIDRVVEVVEETLKGH-EVRLLHR-KK 171
K L V GC Q + D + +E V I+G + R+VE+ EE+ K + + ++ K
Sbjct: 68 NKDAILAVVGCYSQVAPDEIAAIEDVDVIIGTKNRARIVELCEESKKSNLKFNIVSELTK 127
Query: 172 LPALDLPKV--RRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD 229
D+ + + +K + I GC CTYC +ARG + S ++ + + +
Sbjct: 128 DCGFDVLSIENQESKTRAYIKIQEGCNMFCTYCIIPYARGPIKSRPIDDIYEEAVKLANN 187
Query: 230 GVKEVWLSSEDTGAYGRDIGVNLPILLNAI-----VAELPPDGSTMLRIGMTNPPFILEH 284
G KEV ++ G+YG D+G N L++ I + L + + G+ + F++
Sbjct: 188 GYKEVIITGIHVGSYGLDLG-NDTRLIDVIEKLSTIENLDRIRLSSIEAGIISEDFLI-R 245
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
LK +V H H+ +QSG D +L MNR YT +R V + E+ P + + TD
Sbjct: 246 LKNCKKVCEH------FHLSLQSGCDKILKLMNRRYTTDMYRKKVRMIKEIFPNVALTTD 299
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK-RSREL 403
II GFPGE DEDF +T+N +KE F ++H+ ++ R GTPA K+ VKK RS EL
Sbjct: 300 IIVGFPGENDEDFQETLNFVKEIGFSKIHVFKYSKRKGTPAFDFKEQVDGNVKKFRSNEL 359
Query: 404 TSVFEAF-TPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ + T +L E + + E +G L+G+T+ Y++ P +M
Sbjct: 360 ILLAKDMTTEFLKKELSEKHEVLFEENINGNRLIGYTRNYIRFSAPYNEDMKNKVVYCNG 419
Query: 463 TSVGRWSVFGEVIKI 477
SV +FG KI
Sbjct: 420 ISVEGEEIFGLASKI 434
>gi|448506321|ref|ZP_21614431.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|448525058|ref|ZP_21619476.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
gi|445699971|gb|ELZ51989.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 9100]
gi|445700030|gb|ELZ52045.1| MiaB-like tRNA modifying enzyme [Halorubrum distributum JCM 10118]
Length = 441
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 214/435 (49%), Gaps = 38/435 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D ++AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 171
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V EA+ +G E + + E D + Y Q++V + G +G V+
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVE 402
Query: 462 ITSVGRWSVFGEVIK 476
+T FG+ ++
Sbjct: 403 VTGQNTVYAFGDPVE 417
>gi|419718717|ref|ZP_14246023.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
gi|383305057|gb|EIC96436.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum F0468]
Length = 475
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/384 (30%), Positives = 199/384 (51%), Gaps = 31/384 (8%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 21 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 77
Query: 102 NT----QSAMDTLIAKCKSAKKP--------LVVAGCVPQGSRDLKELEGVS-----IVG 144
NT ++A D L + KK + + GC+ Q + ++++++ + G
Sbjct: 78 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 137
Query: 145 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 202
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 138 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 197
Query: 203 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 260
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D +N +LL+ V
Sbjct: 198 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKINFAMLLDE-V 256
Query: 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 320
A++ DG LR +P + + + E+ + + C + LH+P+QSGS A+L MNR Y
Sbjct: 257 AKI--DGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 312
Query: 321 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380
T + +V + +P + + TDII GFPGET+EDF T++++K+ ++ + R
Sbjct: 313 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 372
Query: 381 PGTPAARMK-KVPSAVVKKRSREL 403
GTPAA+M+ ++ ++K R L
Sbjct: 373 SGTPAAKMEDQIDPDIIKDRFDRL 396
>gi|374637033|ref|ZP_09708554.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
gi|373557163|gb|EHP83636.1| MiaB-like tRNA modifying enzyme [Methanotorris formicicus Mc-S-70]
Length = 288
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 15/289 (5%)
Query: 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG 249
PI+ GCLG C+YC K ARG L SY E +V + + +I G K ++++++DT YG DIG
Sbjct: 10 PISEGCLGDCSYCIVKIARGKLISYPREKIVNKAKDLIDKGAKCLFITAQDTACYGFDIG 69
Query: 250 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGS 309
NL LLN + +G ++R+GM + L E+ EV ++ V FLH+P+QSG
Sbjct: 70 DNLANLLNDLSQ---IEGEFIMRVGMMHAKNAQLILDELIEVYKNEKVGKFLHLPLQSGD 126
Query: 310 DAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369
D +L M R YT+ +F+ +V+ V + TDII GFPGET+E F T+ ++KE K
Sbjct: 127 DEILKKMKRGYTVDEFKDIVNEFRRKVKNLCFTTDIIVGFPGETEEQFQNTLEVLKELKP 186
Query: 370 PQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAFTPYLGME---GRVERIWIT 426
+H +++ R GT AA+MK+V + + K+RS L + + YL + G+ R+ +
Sbjct: 187 DYIHGAKYSQRKGTEAAKMKQVDTKIRKRRSEILDKLRRELS-YLNNKKYIGKTMRVLVL 245
Query: 427 EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475
+ G+T + +V G +G +KIT + + G++I
Sbjct: 246 DKGK------GYTDNF--KVVKFEGGEVGEFRKIKITDAKTFGLRGKLI 286
>gi|365838228|ref|ZP_09379579.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hafnia alvei ATCC 51873]
gi|364560408|gb|EHM38348.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Hafnia alvei ATCC 51873]
Length = 474
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 144/456 (31%), Positives = 227/456 (49%), Gaps = 35/456 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTQSAMDTLIAKC-- 114
T+ +++KT+GC N+ DS MA L S G+ LTDN+EEAD+ L+NT S + K
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLGSTHGFELTDNAEEADVLLLNTCSIREKAQEKVFH 61
Query: 115 --------KSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
K A ++ V GCV +G + V IV G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEANPNVIIGVGGCVASQEGKLLRQRAHYVDIVFGPQTLHRLPEMINK-VRG 120
Query: 162 H-----EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
+V +K L P+ + FV I+ GC CTYC + RG S
Sbjct: 121 SKSPVVDVSFPEIEKFDRLPEPRAEGPSAFVSIME---GCNKYCTYCVVPYTRGEEVSRP 177
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
+ ++ + + A GV+EV L ++ AY G ++ + DG +R
Sbjct: 178 ADDVLFEIAQLAAQGVREVNLLGQNVNAYRGPSFDGDICTFAELLRLVAAIDGIDRIRFT 237
Query: 275 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P +E +I V P + SFLH+PVQSGSD +L+ M R +T+ ++++++ L
Sbjct: 238 TSHP---IEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTVLEYKSIIRKLR 294
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 392
+ P + I++D I GFPGET EDF QT+ LI E F + F PRPGTPAA M VP
Sbjct: 295 KARPDILISSDFIIGFPGETQEDFEQTMKLIAEVNFDVSYSFVFSPRPGTPAADMADDVP 354
Query: 393 SAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPS 449
K+R L +A + M G V+RI + I+ + + G T+ V
Sbjct: 355 EEEKKQRLYILQDRINQQAQSYSRKMVGTVQRILVEGISRKNVMEMSGRTENNRVVNFEG 414
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKI 485
+ ++GT V+IT V S+ G +++ +Q+D ++
Sbjct: 415 SPELVGTFVDVEITEVRTNSLRGVLVRTEDQMDLRV 450
>gi|315497214|ref|YP_004086018.1| MiaB family RNA modification protein [Asticcacaulis excentricus CB
48]
gi|315415226|gb|ADU11867.1| RNA modification enzyme, MiaB family [Asticcacaulis excentricus CB
48]
Length = 470
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 140/476 (29%), Positives = 226/476 (47%), Gaps = 46/476 (9%)
Query: 35 KNKPRLHDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSE 94
K + + H + +S+T S + K +++KT+GC N DSE MA L GYA++D +E
Sbjct: 6 KGRLKPHKHRMSETASAASK-----KLHIKTYGCQMNVYDSERMADLLRPLGYAVSDQAE 60
Query: 95 EADIWLINTQSAMDTLIAKCKS-----------------AKKPLVVAGCVPQ--GSRDLK 135
AD+ L+NT + K S + + VAGCV Q G +
Sbjct: 61 GADLVLLNTCHIREKAAEKVYSEIGRLKVMRQEKEARGEGRMTIAVAGCVAQAEGEEIMN 120
Query: 136 ELEGVS-IVGVQQIDRVVEVVEETLKGHEVRL----LHRKKLPALDLPKVRRNKFVEILP 190
V +VG Q ++ E++ T + RL K AL + + + L
Sbjct: 121 RAPAVDLVVGPQAYHQLPELIARTTRAKGERLKADFAPEDKFDALSTER-QASGPTAFLT 179
Query: 191 INVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG 249
+ GC CT+C + RG S V S++ R++ + GV+E+ L ++ AY GR+
Sbjct: 180 VQEGCDKFCTFCVVPYTRGAEWSRPVASILEEARSLASKGVREITLLGQNVNAYNGREAD 239
Query: 250 ---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQ 306
LP L+ A+ +E+ +G +R ++P + + L I +P V +LH+PVQ
Sbjct: 240 GEESTLPRLMQAL-SEI--EGLDRIRYTTSHPNDMTDEL--IRAHAENPAVMPYLHLPVQ 294
Query: 307 SGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366
SGSD +L AMNR++ + ++ L VP + ++ D I GFPGET++DF T++LI+
Sbjct: 295 SGSDKILRAMNRKHGRQAYIDLIARLKAAVPNIALSGDFIVGFPGETEKDFEDTMDLIRT 354
Query: 367 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF----EAFTPYLGMEGRVE 421
+ ++ RPGTPAA M +V AV R + L ++ +AF L G+
Sbjct: 355 VGYASAFSFKYSKRPGTPAAAMPGQVDEAVADGRLQALQALINEQAQAFKASL--VGQTI 412
Query: 422 RIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 477
+ + G VG + V +++G VKI VG S+ GE+ K+
Sbjct: 413 DVLFEKPGRYGQQAVGRSPWLHAVFAEDAAHLIGQIVPVKIVGVGNNSLIGELEKV 468
>gi|160903280|ref|YP_001568861.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Petrotoga
mobilis SJ95]
gi|229890590|sp|A9BGV7.1|MIAB_PETMO RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|160360924|gb|ABX32538.1| RNA modification enzyme, MiaB family [Petrotoga mobilis SJ95]
Length = 439
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/441 (29%), Positives = 211/441 (47%), Gaps = 28/441 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++TFGC N ++SE MAG L G+ T+N +EADI LIN+ + A + +
Sbjct: 3 FYIRTFGCQMNINESEIMAGLLKEEGFEWTENPKEADIILINSCAVREKAENKMYGAIGG 62
Query: 113 --KCKSAKKPLV--VAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 165
K K K L+ V GC + R+ L+ + + V G + + + +V+ L G
Sbjct: 63 YGKLKDENKNLILGVGGCSAEKERENLLERFKNIDFVFGTRNVVDIGNLVKRALNGKRFA 122
Query: 166 LLHRK-KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
K D+PK+ +K + I GC C+YC + RG S +E ++ V
Sbjct: 123 DFSDKLNDVNYDIPKMPISKHHAWITIIYGCNKYCSYCIVPYTRGFEKSRPMEDIIREVE 182
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
+ G KE+ ++ +YG+D G L I D + + P I +
Sbjct: 183 SYAKKGYKEITFLGQNVDSYGKDFGDKKSKLDLLIQKAAEFDSIKRIWFLTSYPSDITDS 242
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L I V ++ H+P QSGS+ +L AMNR+YT +F +V+ + + V + +++D
Sbjct: 243 L--IQTVANEEKAANYFHLPAQSGSNKILKAMNRKYTREEFIELVNKVKKEVANVTVSSD 300
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK--VPSAVVKKRSRE 402
I GFP ETDEDF +TV+LIK+ +F +++I+++ PR GT A + + VP + KR +
Sbjct: 301 FITGFPSETDEDFEETVDLIKQCRFERINIAEYSPREGTIAYKYQNDDVPKHIKNKRLQY 360
Query: 403 LTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
L + E YL E V I + +G ++ G T ++ S + G
Sbjct: 361 LMELQKRINLEENEKYL--EQEVVIIQEGKAGKNGTYM-GRTMNNKLIIFESNEELNGEF 417
Query: 458 ALVKITSVGRWSVFGEVIKIL 478
VK+ + ++GEV+ L
Sbjct: 418 LKVKVNKITPGPLYGEVVNNL 438
>gi|435845798|ref|YP_007308048.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
gi|433672066|gb|AGB36258.1| MiaB-like tRNA modifying enzyme [Natronococcus occultus SP4]
Length = 420
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 121/407 (29%), Positives = 209/407 (51%), Gaps = 36/407 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPL 121
+++T+GC+ N+ +S + +L G+ D +EAD+ ++NT + ++ K+ + L
Sbjct: 5 HIETYGCTSNRGESREIERRLRDAGHHRVDGPDEADVAILNTCTVVE------KTERNML 58
Query: 122 VVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL----DL 177
A + + DL I G + + E + G R+LH ++P +
Sbjct: 59 RRAEELADETADL------YITGCMALAQGEEFAAADVDG---RVLHWDEVPEAVTNGEC 109
Query: 178 PKVRRNK------FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P + V ILPI GC+ C+YC TK A G + S +E V + ++ G
Sbjct: 110 PTTTPDAEPILDGVVGILPIARGCMSDCSYCITKRATGKIDSPPIEENVRKAEALLHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291
KE+ ++ +DTG YG D G L + EL +G +R+GM NP + +E+A V
Sbjct: 170 KEIRITGQDTGVYGWDEGERKLHRLLEEICEL--EGEFRVRVGMANPKGVHGIREELASV 227
Query: 292 L-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP 350
+ +Y FLH PVQSGSD VL M R++ + ++ VV+T + + ++TD I GFP
Sbjct: 228 FAEYDELYDFLHAPVQSGSDDVLGDMRRQHQVEEYLEVVETFDDQLDYWTLSTDFIVGFP 287
Query: 351 GETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS----- 405
ETD D Q++ L++E + ++++++F RPGT AA+MK + + K+RS+E+++
Sbjct: 288 TETDRDHEQSMALLRETRPEKINVTRFSKRPGTDAAKMKGLGGTIKKERSKEMSAAKREL 347
Query: 406 VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
V EA+ +G E R + + + AD + Y Q++V + +
Sbjct: 348 VGEAYESMVG-EVREDVLVVEHGTADSVKC--RDSAYRQLIVQNASD 391
>gi|448479235|ref|ZP_21604087.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
gi|445822513|gb|EMA72277.1| MiaB-like tRNA modifying enzyme [Halorubrum arcis JCM 13916]
Length = 441
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 214/435 (49%), Gaps = 38/435 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +++T+GCS N+ +S + L G+ D ++AD+ ++NT + M
Sbjct: 3 TYHIETYGCSSNRGESREIERALRDGGHRPADGPKDADVAILNTCTVVEKTERNMLRRAE 62
Query: 113 KCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQ-QIDRVVEVVEETLKGHEVRLLHRKK 171
+ LVV GC+ L + E + V +I EV L G E +
Sbjct: 63 ELSDMTAELVVTGCMA-----LAQGEMFADADVDAEILHWDEVPSYVLNG-ECPTVTPDA 116
Query: 172 LPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGV 231
P LD V ILPI GC+ C+YC TK A G + S +VE V + R ++ G
Sbjct: 117 EPVLD-------GVVGILPIARGCMSNCSYCITKFATGRVDSPSVEENVEKARALVHAGA 169
Query: 232 KEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290
KE+ ++ +DTG YG D G LP LL+ I DG +R+GM NP I +E+A+
Sbjct: 170 KEIRVTGQDTGVYGWDNGDRKLPELLDRIC---DIDGEFRVRLGMANPGGIHGIHEELAD 226
Query: 291 VL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349
V + +Y F+H PVQSGSD VL M R++ + FR VV+T + + ++TD I GF
Sbjct: 227 VFAENEELYDFIHAPVQSGSDDVLEDMRRQHRVEKFREVVETFDDRLDHWTLSTDFIVGF 286
Query: 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTS---- 405
P E + D +++L+ E + ++++++F RPGT AA MK + V K+RS+ ++
Sbjct: 287 PTEDEADHELSMDLLAEVRPEKINVTRFSKRPGTDAADMKGLGGTVKKERSKAMSELKME 346
Query: 406 -VFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPST---GNMLGTSALVK 461
V EA+ +G E + + E D + Y Q++V + G +G V+
Sbjct: 347 VVGEAYESMVGE--TFEALVVEEGTGDSVKC--RDGAYRQIIVQNATDRGVEVGDFLTVE 402
Query: 462 ITSVGRWSVFGEVIK 476
+T FG+ ++
Sbjct: 403 VTGHNTVYAFGDPVE 417
>gi|354569012|ref|ZP_08988172.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Fischerella sp. JSC-11]
gi|353539224|gb|EHC08716.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Fischerella sp. JSC-11]
Length = 454
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 220/447 (49%), Gaps = 38/447 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-----KS 116
++ TFGC N++DSE MAG L G+ +++ +AD+ L NT + D K +
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSEDPNQADVILYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L+VAGCV Q G L+ + + +V G Q +R+ +++++ G++V
Sbjct: 69 AKRKHEQPDLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLQQVFDGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRN-KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ D+ K RR+ K + + GC CTYC + RG S T E++ +
Sbjct: 129 TEPIHIIE-DITKPRRDSKVTAWVNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRAEMEE 187
Query: 226 VIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMTN 277
+ G KEV L ++ AYGRD+ G + L + + V ++P G +R ++
Sbjct: 188 LGRQGYKEVTLLGQNIDAYGRDLPGVTPEGRHQHTLTDLLYYVHDVP--GVERIRFATSH 245
Query: 278 PPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P + E L + AE+ P V H+P QSG + VL M R YT +R +++T+ E +
Sbjct: 246 PRYFTERLIRACAEL---PKVCEHFHIPFQSGDNEVLKRMARGYTHEKYRRIINTIREYM 302
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396
P I+ D I GFPGET+E F T+ L+++ F Q++ + + PRPGTPAA S V
Sbjct: 303 PDAAISADAIVGFPGETEEQFENTLKLVEDIGFDQLNTAAYSPRPGTPAAVWDNQLSEEV 362
Query: 397 K----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTK-GYVQVLVPST 450
K +R L + A M GR E + + + D ++G T+ +
Sbjct: 363 KSDRLQRLNHLVATIAAERSQRYM-GRTEEVLVEDQNPKDKTQVMGRTRTNRLTFFTGDI 421
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIKI 477
+ G V+I+ V +S+ GE +++
Sbjct: 422 NELKGKLVKVRISEVRAFSLTGEPVEV 448
>gi|291279773|ref|YP_003496608.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
gi|290754475|dbj|BAI80852.1| tRNA-i(6)A37 thiotransferase enzyme [Deferribacter desulfuricans
SSM1]
Length = 439
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 128/441 (29%), Positives = 216/441 (48%), Gaps = 29/441 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSA-------MDTLIAK 113
+++KTFGC N+ DSE +A GY+LTDN EEA +INT S +++ + +
Sbjct: 3 LFIKTFGCQMNEYDSERIAAIFQERGYSLTDNLEEASFAVINTCSVREKPYHKVESELGR 62
Query: 114 CKSAKK-----PLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR 165
K KK + V GCV Q G + L + V +V G IDR+ +++ KG +
Sbjct: 63 LKKFKKLNPDFKIAVCGCVAQQDGEKFLDRFDYVDLVFGTSAIDRLHSLIDLVEKGERI- 121
Query: 166 LLHRKKLPALDLPKVRRNKFVE-ILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ L +P R K V + I GC C+YC + RG S ++ ++
Sbjct: 122 CDTSEGDDELSIPVFGRGKKVSAFVTIMKGCDNFCSYCIVPYVRGREKSRKPSEILDEIK 181
Query: 225 TVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ +GVKEV L ++ +YG+ D +N P LL + +G +R ++P
Sbjct: 182 YLVNNGVKEVTLLGQNVNSYGKGLDEDINFPKLLYKV---HDINGLERIRFVTSHPKDFD 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ L I + P V +LH+P+Q+GS+ VL MNR+YT ++R V E++P + ++
Sbjct: 239 DEL--IFAIRDLPKVCEYLHLPLQAGSNKVLKMMNRKYTYEEYRDKVLKAKEMIPDLALS 296
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
+D I GFPGET EDF +T+ IKE ++ + ++ PRP T A+ + +R
Sbjct: 297 SDFIVGFPGETVEDFAETLKAIKEIRYESIFAFKYSPRPKTKASNFVDDITDDEKSRRLN 356
Query: 402 ELTSVFEAFTPYLGME--GRVERIWITEIAADGIH-LVGHTKGYVQVLVPSTGNM-LGTS 457
EL S+ T + G+V+ I + + G + G + V + S + +G
Sbjct: 357 ELLSIQSKITEEINKSYVGKVQEILVEGKSKKGENQFSGRNRQNKVVNILSNHKLNIGDI 416
Query: 458 ALVKITSVGRWSVFGEVIKIL 478
V+I + S+ ++++ +
Sbjct: 417 VTVEIVEAKKNSLLAKIVEFV 437
>gi|424834370|ref|ZP_18259081.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
sporogenes PA 3679]
gi|365978716|gb|EHN14785.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Clostridium
sporogenes PA 3679]
Length = 450
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 207/440 (47%), Gaps = 30/440 (6%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL---------I 111
+++T+GC N+ DSE ++G L GY T+ EEAD+ + NT + I
Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKREGYIRTEEREEADVIIFNTCCVRENAELKVYGNLGI 75
Query: 112 AKCKSAKKP---LVVAGCVPQ----GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K AK P + V GC+ Q K+ V I+ G + + E K H
Sbjct: 76 LKGLKAKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNLHNFSNYLNEVKKKHT 135
Query: 164 VRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
L ++K ++ ++P R+N + I GC CTYC + RG S T E++
Sbjct: 136 SVLKIQEKEDSIIENMPIDRKNSMKAFVTIMYGCNNFCTYCIVPYVRGRERSRTPENIED 195
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
++ +++ G KE+ L ++ +YG+D+ + LL + +G +R ++P
Sbjct: 196 EIKNLVSKGYKEITLLGQNVNSYGKDLEPKITFAELLKRVNN---IEGLERVRFMTSHPK 252
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
+ + + E C +H+PVQSGS +L MNR Y + VV + L+P +
Sbjct: 253 DLTDDVIEAIAKCDKLC--EQIHLPVQSGSSDMLKKMNRHYDREKYLDVVSKIKRLIPNV 310
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
I+TDII GFPGET++DF +T+NL+K ++ + R GTPAA+ + +VP V K
Sbjct: 311 AISTDIIVGFPGETEKDFEETLNLVKTVEYDSAFTFLYSIRKGTPAAKFENQVPEDVKHK 370
Query: 399 RSRELTSVFEAFTPY--LGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLG 455
R L V + EG+VE + + + D L+G T+ V + +G
Sbjct: 371 RFNRLVEVVNEISAKKNKAYEGKVEEVLVEGTSKNDEGKLMGRTRTGKLVNFIGNKDSIG 430
Query: 456 TSALVKITSVGRWSVFGEVI 475
VKIT +S+ GE I
Sbjct: 431 ELVNVKITKANSFSLTGEEI 450
>gi|431794904|ref|YP_007221809.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785130|gb|AGA70413.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 454
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/423 (30%), Positives = 218/423 (51%), Gaps = 37/423 (8%)
Query: 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT 109
+L P+ PG + T GC NQ++SE + GY + +E+AD+ ++NT + +T
Sbjct: 20 NLDPRTPG---VCFVTLGCKVNQTESEALGQLFRNNGYKVVSTTEKADVVVVNTCTVTNT 76
Query: 110 LIAKCKSAKKPLV---------VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEET 158
AK + + +V V GC Q + ++ ++EGV +V G Q +++E +++
Sbjct: 77 GDAKSRQTIRRMVKAHPDAFVVVMGCYAQTAPGEILDIEGVDLVLGTQDRGKILEWIDQV 136
Query: 159 LKGHEVR-----LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
+ + + + K+ L L + ++ L I GC CTYC +ARG + S
Sbjct: 137 RREQQPKSSVHTIWDAKEFEELPLIE-EESRTRATLKIQEGCNKFCTYCIIPYARGPVRS 195
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV--NLPILLNAIVAELPPDGSTML 271
E+ + ++A G KE+ L+ TG+YG D+G NL L+ I G L
Sbjct: 196 RIPENALSEAEKLVAAGYKEIVLTGIHTGSYGEDLGEDWNLARLVKEIAQ---VKGLHRL 252
Query: 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
R+ P L EI ++ P V LH+P+Q GSDA+L+ M R YT+S+F+ ++
Sbjct: 253 RLSSIEPMEFTPELIEI--IITTPTVCPHLHIPLQCGSDAILTRMKRPYTVSEFKELIHR 310
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KK 390
L L+PG+ I TD+I GFPGET+E+F +++ ++ F VH+ + R GTPAA+ +
Sbjct: 311 LQGLLPGIAITTDVIVGFPGETEENFQESLETVRSCGFSGVHVFPYSKRKGTPAAKYPDQ 370
Query: 391 VPSAVVKKRSRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 445
+ + + ++R ++L V E +LG V W+ ++GI GHT+ Y+QV
Sbjct: 371 LSNKIKEQRVKDLMKVAKESHEEYVNQFLGQAIEVLVEWVN---SEGI-ATGHTRNYLQV 426
Query: 446 LVP 448
+P
Sbjct: 427 HLP 429
>gi|148559930|ref|YP_001259948.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella ovis
ATCC 25840]
gi|229890453|sp|A5VTA1.1|MIAB_BRUO2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|148371187|gb|ABQ61166.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella ovis ATCC 25840]
Length = 467
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 221/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLAVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|292670089|ref|ZP_06603515.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
gi|292648277|gb|EFF66249.1| tRNA-I(6)A37 thiotransferase [Selenomonas noxia ATCC 43541]
Length = 472
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 212/440 (48%), Gaps = 41/440 (9%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS 116
G +M T GC NQ ++E M G A GY + E A++++INT S K +
Sbjct: 37 GLRAAFM-TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKSRQ 95
Query: 117 AKKP---------LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH--- 162
+ + VAGC Q +++ L GV +V G ++ ++V+ VE L+ +
Sbjct: 96 LIRRAARTNPDACIAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGV 155
Query: 163 --------EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSY 214
+ R+ + +P +P R L I GC CT+C +ARG + S
Sbjct: 156 IGAITDIMQARVF--EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSR 209
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
+ ++ + + G EV L+ GAYG D+ P L +A L LR+G
Sbjct: 210 ELSAVAREMHLLTEAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLG 268
Query: 275 MTNPPFILEHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
+E ++ E++R P + LH+P+Q+GSDAVL AMNR Y + F ++ +
Sbjct: 269 SLES---VELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVR 325
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVP 392
VPG+ ++TDII GFPGET+EDF ++ ++ F ++H+ + PR GTPAA R +VP
Sbjct: 326 RAVPGVAVSTDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVP 385
Query: 393 SAVVKKRSRELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL--VP 448
AV K+R+ + ++ E + G V + E A DG+ G T+ Y++V P
Sbjct: 386 PAVRKERAARMQALAEELAQDYHRAALGSVTEVLF-ETAEDGV-TNGLTETYIRVYTDAP 443
Query: 449 STGNMLGTSALVKITSVGRW 468
L LV++ G W
Sbjct: 444 VARGALVPMRLVRLYRDGVW 463
>gi|212712962|ref|ZP_03321090.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
30120]
gi|422018994|ref|ZP_16365545.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Providencia
alcalifaciens Dmel2]
gi|212684440|gb|EEB43968.1| hypothetical protein PROVALCAL_04060 [Providencia alcalifaciens DSM
30120]
gi|414104180|gb|EKT65752.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Providencia
alcalifaciens Dmel2]
Length = 476
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 140/454 (30%), Positives = 222/454 (48%), Gaps = 37/454 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINT----QSAMDTLIA--- 112
+YMKT+GC N+ DS M L S GY LTD +EEAD+ L+NT + A + +
Sbjct: 7 LYMKTWGCQMNEYDSSKMVSLLESTHGYQLTDIAEEADLLLLNTCSIREKAQEKVFHQLG 66
Query: 113 --KCKSAKKPLV---VAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
K KKP + V GCV D + V IV G Q + R+ E++ + ++G+
Sbjct: 67 RWKFFKDKKPDIIIGVGGCVASQEGDFIRQRAPCVDIVFGPQTLHRLPEMINQ-IQGNRS 125
Query: 165 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
++ P ++ LP+ R + I GC CT+C + RG S + ++
Sbjct: 126 PIID-ISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTFCVVPYTRGEEVSRPCDDIL 184
Query: 221 GRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ + A GV+EV L ++ AY G + + DG +R ++P
Sbjct: 185 FEIAQLAAQGVREVNLLGQNVNAYRGETFDGEICSFAELLRLVASIDGIDRVRFTTSHP- 243
Query: 280 FILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+E +I EV R P + SFLH+PVQSGSD +L+ M R +T +++ ++ L E PG
Sbjct: 244 --IEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILTMMKRAHTALEYKAIIRKLREARPG 301
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398
+ I++D I GFPGET +DF +T+ LI + F + + RPGTPAA +P V +
Sbjct: 302 ILISSDFIVGFPGETTDDFEKTMKLIADVNFDMSYSFVYSARPGTPAA---DLPDDVSED 358
Query: 399 RSRELTSVF------EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPSTG 451
+E + +A + M G V+RI + + + L G T+ V T
Sbjct: 359 EKKERLYLLQQRINQQAMSFSRAMLGTVQRILVEGTSRKNVMELSGRTENNRVVNFEGTP 418
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKI 485
+M+G V+I V S+ G+VI+ +Q+D ++
Sbjct: 419 DMIGKFVDVEIVDVYTNSLRGKVIRTEDQMDLRV 452
>gi|401565221|ref|ZP_10806071.1| MiaB-like protein [Selenomonas sp. FOBRC6]
gi|400188062|gb|EJO22241.1| MiaB-like protein [Selenomonas sp. FOBRC6]
Length = 430
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 214/437 (48%), Gaps = 39/437 (8%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ ++E M G A GY + E A++++INT S LI +
Sbjct: 7 TLGCKVNQFETETMEGLFRARGYEVVPFEERAEVYVINTCSVTHLSDRKSRQLIRRAART 66
Query: 118 KKP--LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----------- 162
+ V GC Q +++ LEGV +V G + R+V+ VEE L+
Sbjct: 67 NPSACIAVTGCYAQVAPEEIRALEGVRVVIGTKARARIVDYVEEALRADTGATGTITDIM 126
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ R+ + +P LP R L I GC CT+C +ARG + S + ++
Sbjct: 127 QARVF--EDIPLHSLPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVARE 180
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ + G EV L+ GAYG D+ P L +A L LR+G +
Sbjct: 181 MKLLTEAGFYEVVLTGIHLGAYGIDLAAR-PTLADACRTALAEKSLRRLRLGSLES---V 236
Query: 283 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
E ++ E++R P + LH+P+Q+GSD VL AMNR Y + F +++ + VPG+ I
Sbjct: 237 ELSADLLELMRTEPRFAAHLHLPLQAGSDNVLRAMNRHYDTAAFAHLLEEVRAAVPGVAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
+TDII GFPGET+EDF ++ +++ F ++H+ + R GTPAAR +VP V K+R+
Sbjct: 297 STDIIVGFPGETEEDFAVGLDFVRQMGFARMHVFPYSARKGTPAARRSDQVPPTVRKERA 356
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSA 458
+ ++ + + G V + E DG+ G T+ Y++V + G A
Sbjct: 357 ARMQALADELAEEYHRAALGSVADVLF-ETTEDGV-TDGLTETYIRVYTDAPVTR-GQIA 413
Query: 459 LVKITSVGRWSVFGEVI 475
+++T + R V+GE+I
Sbjct: 414 PLRLTHLYRDGVWGEMI 430
>gi|23503001|ref|NP_699128.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella suis
1330]
gi|161620062|ref|YP_001593949.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella canis
ATCC 23365]
gi|225626520|ref|ZP_03784559.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
Cudo]
gi|260567379|ref|ZP_05837849.1| RNA modification protein [Brucella suis bv. 4 str. 40]
gi|261217971|ref|ZP_05932252.1| RNA modification protein [Brucella ceti M13/05/1]
gi|261221200|ref|ZP_05935481.1| RNA modification protein [Brucella ceti B1/94]
gi|261314813|ref|ZP_05954010.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
gi|261316628|ref|ZP_05955825.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|261321179|ref|ZP_05960376.1| RNA modification protein [Brucella ceti M644/93/1]
gi|261755857|ref|ZP_05999566.1| RNA modification protein [Brucella suis bv. 3 str. 686]
gi|261759085|ref|ZP_06002794.1| RNA modification protein [Brucella sp. F5/99]
gi|265987700|ref|ZP_06100257.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
gi|265997161|ref|ZP_06109718.1| RNA modification protein [Brucella ceti M490/95/1]
gi|294851378|ref|ZP_06792051.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
07-0026]
gi|340791734|ref|YP_004757199.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|376275261|ref|YP_005115700.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella canis HSK
A52141]
gi|376281796|ref|YP_005155802.1| hypothetical protein BSVBI22_A2149 [Brucella suis VBI22]
gi|384225788|ref|YP_005616952.1| hypothetical protein BS1330_I2147 [Brucella suis 1330]
gi|81751814|sp|Q8FXU4.1|MIAB_BRUSU RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890452|sp|A9M9Y3.1|MIAB_BRUC2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|23349040|gb|AAN31043.1| conserved hypothetical protein [Brucella suis 1330]
gi|161336873|gb|ABX63178.1| RNA modification enzyme, MiaB family [Brucella canis ATCC 23365]
gi|225618177|gb|EEH15220.1| RNA modification enzyme, MiaB family protein [Brucella ceti str.
Cudo]
gi|260156897|gb|EEW91977.1| RNA modification protein [Brucella suis bv. 4 str. 40]
gi|260919784|gb|EEX86437.1| RNA modification protein [Brucella ceti B1/94]
gi|260923060|gb|EEX89628.1| RNA modification protein [Brucella ceti M13/05/1]
gi|261293869|gb|EEX97365.1| RNA modification protein [Brucella ceti M644/93/1]
gi|261295851|gb|EEX99347.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|261303839|gb|EEY07336.1| RNA modification protein [Brucella pinnipedialis M163/99/10]
gi|261739069|gb|EEY27065.1| RNA modification protein [Brucella sp. F5/99]
gi|261745610|gb|EEY33536.1| RNA modification protein [Brucella suis bv. 3 str. 686]
gi|262551629|gb|EEZ07619.1| RNA modification protein [Brucella ceti M490/95/1]
gi|264659897|gb|EEZ30158.1| RNA modification protein [Brucella pinnipedialis M292/94/1]
gi|294819967|gb|EFG36966.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella sp. NVSL
07-0026]
gi|340560193|gb|AEK55431.1| RNA modification protein [Brucella pinnipedialis B2/94]
gi|343383968|gb|AEM19460.1| hypothetical protein BS1330_I2147 [Brucella suis 1330]
gi|358259395|gb|AEU07130.1| hypothetical protein BSVBI22_A2149 [Brucella suis VBI22]
gi|363403828|gb|AEW14123.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella canis HSK
A52141]
Length = 467
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 221/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|300710670|ref|YP_003736484.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|448294994|ref|ZP_21485069.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
gi|299124353|gb|ADJ14692.1| MiaB-like tRNA modifying enzyme [Halalkalicoccus jeotgali B3]
gi|445585294|gb|ELY39590.1| MiaB-like tRNA modifying protein [Halalkalicoccus jeotgali B3]
Length = 414
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 190/362 (52%), Gaps = 46/362 (12%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD----TLIAKCKSA 117
+++T+GC+ N+ +S + L G+ EAD+ ++NT + ++ ++ + K
Sbjct: 5 HIETYGCTSNRGESRAIESALRDAGHYRAAGPAEADVAILNTCTVVEKTETNMLRRAKEL 64
Query: 118 KKP---LVVAGCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPA 174
++ L+V GC+ L + E S V + R++H ++P
Sbjct: 65 EEETTDLIVTGCMA-----LAQSEAFSDV-------------------DARVMHWDEVPQ 100
Query: 175 LDL--------PKVR--RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
L P V V ILPI GC+ C+YC TKHA G + S T+E+ V + R
Sbjct: 101 AALNGECPTPGPGVEPVLEGVVGILPIARGCMSNCSYCITKHATGRVDSPTIEANVEKAR 160
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGV-NLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
++ G KE+ ++ +DTG YG D G +LP LL+ I A +G +R+GM NP I
Sbjct: 161 ALVHAGAKELRITGQDTGVYGWDDGERSLPELLSRICA---IEGEFRVRLGMANPGGIHG 217
Query: 284 HLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+E+AEV + +Y F+H PVQSGSD VL M R++ + FR +V T + ++
Sbjct: 218 IHEELAEVFAENEKLYDFIHAPVQSGSDEVLEEMRRQHKVEKFREIVKTFDRELDHWTLS 277
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRE 402
TD I GFP ET+ D +++L++E + +V++++F RP T AA MK + + K+RS+
Sbjct: 278 TDFIVGFPTETEADHELSMDLLREIRPEKVNVTRFSKRPKTDAADMKGLGGTIKKERSKA 337
Query: 403 LT 404
++
Sbjct: 338 MS 339
>gi|417908008|ref|ZP_12551775.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
gi|341595095|gb|EGS37773.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Staphylococcus capitis
VCU116]
Length = 514
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/444 (29%), Positives = 217/444 (48%), Gaps = 34/444 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINT ++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 400 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAA--DGIHLVGHTKGYVQVLVPSTGN 452
+ L +A + Y+G V + E A+ D L G+T V +
Sbjct: 426 LQRLNKKVGEYSQKAMSKYVGKIVTV----LCEGASKKDDTVLAGYTDKNKLVNFKAPKE 481
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
M+G VKI ++S+ G +K
Sbjct: 482 MIGKLVDVKIDEAKQYSLNGTFVK 505
>gi|392407827|ref|YP_006444435.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Anaerobaculum mobile DSM 13181]
gi|390620963|gb|AFM22110.1| tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB
[Anaerobaculum mobile DSM 13181]
Length = 450
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 135/440 (30%), Positives = 214/440 (48%), Gaps = 36/440 (8%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC-------- 114
M +GC NQ D + + L+ G+ TD S ADI ++ T S + K
Sbjct: 7 MDIYGCQMNQYDGDRLRTVLTQKGWLETDPSY-ADIVIMITCSIREKAEQKVLSEIGRYG 65
Query: 115 ---KSAKKP-LVVAGCVPQ--GSRDLKELEGV-SIVGVQQIDRVVEVVEETLKGHEVRLL 167
++ +P L V GC+ Q G L++ V ++VG + I R+ +V+E L V L
Sbjct: 66 RIYRTKGRPVLAVVGCMAQNMGLDLLRKFPQVKAVVGPRHIGRLPDVLEGVLNHKAVAYL 125
Query: 168 HRKKLPALDL---PKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+DL P VR N F + I GC CTYC + RG S ++ V
Sbjct: 126 DEDPREMVDLEVAPLVRSNPFKAFVTIAHGCDNFCTYCIVPYVRGRFVSRHPSEILKEVN 185
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ GV EV L ++ +YG+D G LL V+ +P G +R ++P
Sbjct: 186 ELVESGVIEVTLLGQNVDSYGKDFDNGYRFSNLLRD-VSRIP--GLLRVRFTTSHPKDFT 242
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + E+ + P + +++P+QSGS+ +L MNR YT+ + +V+ + E VP + I
Sbjct: 243 DDVIEV--MASEPKICPAINLPIQSGSNRILKKMNRGYTVEHYEEIVNHIREAVPEVAIT 300
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
+D+I GFPGE ++DF T+ ++K +F VH + + PR GTPAA M +VP +++ R
Sbjct: 301 SDLIVGFPGEAEDDFKDTLEMLKRMQFDLVHTAAYSPRNGTPAAVMPDQVPE---EEKKR 357
Query: 402 ELTSVFE-----AFTPYLGMEGRVERIWITEIAADGIHLV-GHTKGYVQVLVPSTGNMLG 455
L V E + L + G V + I A G ++ G T VL+P +MLG
Sbjct: 358 RLAIVNELQDGISLQKNLSLIGNVVEVLIDGYAPKGKSMLQGRTPTDKVVLIPGDEDMLG 417
Query: 456 TSALVKITSVGRWSVFGEVI 475
V +T+ W ++GE+I
Sbjct: 418 KLCQVHVTNASHWYLYGEII 437
>gi|17988259|ref|NP_540893.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis bv. 1 str. 16M]
gi|225853579|ref|YP_002733812.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis ATCC 23457]
gi|256262937|ref|ZP_05465469.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
gi|260563053|ref|ZP_05833539.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
gi|265992174|ref|ZP_06104731.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
gi|265993912|ref|ZP_06106469.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
gi|384212505|ref|YP_005601589.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
M5-90]
gi|384409604|ref|YP_005598225.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis M28]
gi|384446137|ref|YP_005604856.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
NI]
gi|81851031|sp|Q8YEA2.1|MIAB_BRUME RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|17984028|gb|AAL53157.1| miab protein [Brucella melitensis bv. 1 str. 16M]
gi|225641944|gb|ACO01858.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
ATCC 23457]
gi|260153069|gb|EEW88161.1| RNA modification protein [Brucella melitensis bv. 1 str. 16M]
gi|262764893|gb|EEZ10814.1| RNA modification protein [Brucella melitensis bv. 3 str. Ether]
gi|263003240|gb|EEZ15533.1| RNA modification protein [Brucella melitensis bv. 1 str. Rev.1]
gi|263092811|gb|EEZ16986.1| RNA modification protein [Brucella melitensis bv. 2 str. 63/9]
gi|326410151|gb|ADZ67216.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis M28]
gi|326539870|gb|ADZ88085.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
M5-90]
gi|349744126|gb|AEQ09669.1| RNA modification enzyme, MiaB family protein [Brucella melitensis
NI]
Length = 467
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 221/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIAHLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|403070168|ref|ZP_10911500.1| hypothetical protein ONdio_11357 [Oceanobacillus sp. Ndiop]
Length = 449
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/447 (29%), Positives = 216/447 (48%), Gaps = 37/447 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSA-- 117
T+ T GC N ++E + GY D ++D+++INT + ++ K +
Sbjct: 3 TVAFHTLGCKVNHYETEGIWRMFLEKGYERVDFDHDSDVYVINTCTVTNSGDKKSRQVIR 62
Query: 118 ----KKP---LVVAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
K P + V GC Q S ++ E+ GV +V G Q + ++E K E
Sbjct: 63 RAIRKNPDAVICVTGCYAQTSPGEIMEIPGVDVVVGTQDRKNIFSYIDEHKKTKEPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P V ++ L I GC CT+C +RG L S ES++ +
Sbjct: 123 SNIMKNRVFEEMDVP-VFTDRTRASLKIQEGCNNFCTFCIIPWSRGLLRSRDPESVINQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
++ G KE+ L+ T YG D+ N +LL + +G +RI I
Sbjct: 182 DKLVKAGYKELVLTGIHTAGYGEDLKDYNFAMLLQELEK---VEGLERIRISSIEASQIT 238
Query: 283 EHLKEIAE----VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + ++ + ++RH LH+P+Q+GSDAVL+ M R+Y+ ++ V + + +PG
Sbjct: 239 DEVIDVLDKSKKIVRH------LHIPLQAGSDAVLARMRRKYSTGFYKEKVKKIKQALPG 292
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ I +D+I GFPGET+E+F +T N IKE + ++H+ F R GTPA+RM +V V +
Sbjct: 293 LAITSDVIVGFPGETEEEFMETYNFIKEIGYSELHVFPFSRRTGTPASRMDNQVEDEVKE 352
Query: 398 KRSRELTSVFEAFTPYLG--MEGRVERIWITEIAADGIH---LVGHTKGYVQVLVPSTGN 452
+R L S+ + E V + E D H LVG+T Y++V T +
Sbjct: 353 ERVHRLISLSDQLAKEYASNYENEVLEVIPEERILDEGHPELLVGYTDNYMKVQFEGTPD 412
Query: 453 MLGTSALVKITSVGRWSVFGEVIKILN 479
M+G VKIT G G ++I++
Sbjct: 413 MIGKIVRVKITKSGYPYNHGTFVRIMD 439
>gi|302871917|ref|YP_003840553.1| MiaB family RNA modification protein [Caldicellulosiruptor
obsidiansis OB47]
gi|302574776|gb|ADL42567.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
obsidiansis OB47]
Length = 433
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/442 (28%), Positives = 222/442 (50%), Gaps = 38/442 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP 120
I T GC NQ +++ +A G+ + D +AD+++INT + + K + A K
Sbjct: 3 IAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKK 62
Query: 121 ---------LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 169
+VV GC PQ +++++ + I+ G + ++V+ V+E L ++
Sbjct: 63 AKKLSPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLD-------NK 115
Query: 170 KKLPALDLPKVRRNKFVEI------------LPINVGCLGACTYCKTKHARGHLGSYTVE 217
KK+ A+D +R F E+ + I GC C+YC +ARG + S ++E
Sbjct: 116 KKIVAID-EGYKRESFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLE 174
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
S+ VR ++++G KE ++ + AYG+D+ + L++ I +G +R+
Sbjct: 175 SIEEEVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLE 233
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + E I+ +L + LH+ +QSGSD +L MNR YT + ++ +V+ + E
Sbjct: 234 PLIMSEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKLMNRHYTTAQYQGIVERIKEKWD 291
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 396
+ TDII GFPGET+EDFN TV ++E F ++H+ +F P+ GT A M ++ S
Sbjct: 292 DVAFTTDIIVGFPGETEEDFNDTVKFVQEIGFSRIHVFRFSPKKGTKAYDMPNQIDSKEK 351
Query: 397 KKRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
++RS+ + V ++ + G+ + I + + + G++ Y++ LV + ++
Sbjct: 352 ERRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTLVRKSHMIV 411
Query: 455 -GTSALVKITSVGRWSVFGEVI 475
G VKIT V GE+I
Sbjct: 412 PGEIYKVKITQAYEQYVKGEII 433
>gi|21231765|ref|NP_637682.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66768109|ref|YP_242871.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. 8004]
gi|188991239|ref|YP_001903249.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Xanthomonas
campestris pv. campestris str. B100]
gi|81305914|sp|Q4UVS2.1|MIAB_XANC8 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|81793688|sp|Q8P8B5.1|MIAB_XANCP RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229891032|sp|B0RRW2.1|MIAB_XANCB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|21113472|gb|AAM41606.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573441|gb|AAY48851.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167732999|emb|CAP51197.1| unnamed protein product [Xanthomonas campestris pv. campestris]
Length = 485
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 231/458 (50%), Gaps = 43/458 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT----QSAMDTLIAKC- 114
+Y+KT GC N+ DS MA L+A G LTDN E+AD+ L+NT + A + + ++
Sbjct: 39 LYIKTHGCQMNEYDSAKMADVLAASEGLELTDNPEDADVVLVNTCSIREKAQEKVFSQLG 98
Query: 115 -----KSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
K+ KP++ V GCV +G +K V +V G Q + R+ E++ + +
Sbjct: 99 RWKALKAGGKPVIIGVGGCVASQEGEAIVKRAPYVDLVFGPQTLHRLPELIRARRESGKS 158
Query: 165 RL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
++ + ++ D LP+ R + + I GC C++C + RG S E ++
Sbjct: 159 QVDISFPEIEKFDRLPEPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPFEDVLVE 218
Query: 223 VRTVIADGVKEVWLSSEDT----GAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRI 273
V + A GV+E+ L ++ GAYG D G +L +L+ I A++ DG +R
Sbjct: 219 VAQLAAQGVREINLLGQNVNAYRGAYGADAGEPAQYADLGLLIRTI-AQI--DGIGRIRF 275
Query: 274 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
++P LE + + R P + ++LH+PVQ+GSD +LSAM R YT +F++ + L
Sbjct: 276 TTSHP---LEFSDSLVDAYRDVPQLANYLHLPVQAGSDRILSAMKRGYTALEFKSKIRKL 332
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 391
+ P + I++D I GFPGETD DF++T+ LI++ F Q + RPGTPA+ ++
Sbjct: 333 RAVRPDISISSDFIVGFPGETDADFDKTMKLIEDVGFDQSFSFIYSRRPGTPASDLEDDT 392
Query: 392 PSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVP 448
P AV + R L + A + M G V+R+ + + D L G T+ V P
Sbjct: 393 PDAVKQARLARLQAHINAHAAGISQRMVGSVQRVLVEGPSRRDANELTGKTENMRPVNFP 452
Query: 449 STGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIA 486
++G V IT S+ G + Q+DD A
Sbjct: 453 GNPRLVGQFVDVLITEALSNSLRGRI-----QLDDSAA 485
>gi|261751292|ref|ZP_05995001.1| RNA modification protein [Brucella suis bv. 5 str. 513]
gi|261741045|gb|EEY28971.1| RNA modification protein [Brucella suis bv. 5 str. 513]
Length = 467
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 221/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPRA-NTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|427720831|ref|YP_007068825.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
gi|427353267|gb|AFY35991.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Calothrix sp. PCC 7507]
Length = 454
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 138/448 (30%), Positives = 216/448 (48%), Gaps = 40/448 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ +++ AD+ L NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEFSEDPNNADLILYNTCTIRDNAQHKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ L++AGCV Q G L+ + + +V G Q +R+ +++E L+G++V
Sbjct: 69 AKRKHEQPNLKLILAGCVAQQEGESLLRRVPELDLVMGPQHANRLKDLLESVLEGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ + RR+ V +NV GC CTYC + RG S T ++ +
Sbjct: 129 TEAVHIME-DITQPRRDSSVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPAAIRAEIE 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ G KE+ L ++ AYGRD+ G +L L + + G +R ++P
Sbjct: 187 ALGQQGYKEITLLGQNIDAYGRDLPGATPEGRHLHTLTDLLYYIHDVPGIERIRFATSHP 246
Query: 279 PFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ E L K AE+ P V H+P QSG + +L AM R YT +R ++DT+ +P
Sbjct: 247 RYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMARGYTHEKYRRIIDTIRRYMP 303
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVK 397
I+ D I GFPGET+ F T+ L + F ++ + + PRPGTPAA S VK
Sbjct: 304 DASISADAIVGFPGETEAQFENTLKLTADIGFDMLNTAAYSPRPGTPAALWDNQLSEEVK 363
Query: 398 ----KRSRELTS--VFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPST 450
+R L + V E Y GR+E + + + D ++G T+G
Sbjct: 364 SDRLQRLNHLVNVKVAERSQRYF---GRIEEVLVEDQNPKDKTQVMGRTRGNRLTFFTGD 420
Query: 451 GNML-GTSALVKITSVGRWSVFGEVIKI 477
N + G VKIT V +S+ GE +++
Sbjct: 421 INQIKGQVVKVKITEVRPFSLTGEPVEV 448
>gi|261324091|ref|ZP_05963288.1| RNA modification protein [Brucella neotomae 5K33]
gi|261300071|gb|EEY03568.1| RNA modification protein [Brucella neotomae 5K33]
Length = 467
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 137/459 (29%), Positives = 221/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K K A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMKDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEVEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|402829205|ref|ZP_10878081.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
gi|402284186|gb|EJU32689.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Slackia sp. CM382]
Length = 454
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/459 (30%), Positives = 213/459 (46%), Gaps = 46/459 (10%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE--------------ADIW 99
+I +T Y T+GC N+ DSE +AG L + G EE ADI
Sbjct: 5 EILTNKTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIR 64
Query: 100 LINTQSAMDTLIAKCKSA--KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVV 152
L+ S + + SA K+ + + GC+ G RD + L+ V +V G Q I+R+
Sbjct: 65 LMGQVSTIKGVPLPEGSALDKRIVCIGGCI--GQRDGVALTETLDNVDVVFGTQNIERLP 122
Query: 153 EVVEETLK--GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 210
++ L GH V + + DLP R + LPI VGC CT+C + RG
Sbjct: 123 YLITGVLSQGGHFVEIEQDSDSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGR 182
Query: 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGS 268
S T+E +V +A+GVKE+ L ++ +YGRD+ +L A+ A G
Sbjct: 183 ERSRTIEDVVTNAEAYVAEGVKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GV 238
Query: 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 328
LR ++P + + + IA + LH+PVQSGSD VL MNR Y + + +
Sbjct: 239 ERLRFATSHPKDLTDEV--IAAFGELGNLMPALHLPVQSGSDRVLEDMNRTYDSAHYLGL 296
Query: 329 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388
V L P + ++TD+I GFPGET+EDF T +LI+ + QV + R GTPAA M
Sbjct: 297 VRKLRASCPDIALSTDVIVGFPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPAADM 356
Query: 389 -KKVPSAVVKKRSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGY 442
P V+++R L + E +LG + ++ ++ D LVGH+
Sbjct: 357 FDDTPRDVIQRRFDRLVELVQRKALEQNRRFLGRD--LDVLFEGPSRRDPSMLVGHSPHN 414
Query: 443 VQVLVPSTGNM-----LGTSALVKITSVGRWSVFGEVIK 476
V V P M +G LV I W + G +++
Sbjct: 415 VTVHAPLPAGMDASAFVGRMRLVHIDEAKTWYLSGTLVE 453
>gi|444352574|ref|YP_007388718.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
gi|443903404|emb|CCG31178.1| tRNA-i(6)A37 methylthiotransferase [Enterobacter aerogenes EA1509E]
Length = 474
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 147/452 (32%), Positives = 224/452 (49%), Gaps = 35/452 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINT----QSAMDTLIA 112
T+ +++KT+GC N+ DS MA L A GY LT+ +EEAD+ L+NT + A + +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTEVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 113 -----KCKSAKKPLV---VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
K KKP V V GCV +G + V I+ G Q + R+ E+++
Sbjct: 62 QLGRWKLLKEKKPGVIIGVGGCVASQEGKLIRQRAHYVDIIFGPQTLHRLPEMIDAVRNN 121
Query: 162 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
H+ V + ++ D LP+ R + I GC CTYC + RG S + +
Sbjct: 122 HKPVIDVSFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKYCTYCVVPYTRGEEVSRPCDDI 181
Query: 220 VGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
+ + + A GV+EV L ++ A Y G N LL + A DG +R
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTG-NFADLLRLVAA---IDGIDRIRFT 237
Query: 275 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P +E +I EV R P + SFLH+PVQ+GSD VL+ M R +T+ +++ ++ L
Sbjct: 238 TSHP---IEFTDDIIEVYRDTPELVSFLHLPVQAGSDRVLNLMGRTHTVLEYKAIIRKLR 294
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 392
E P +QI++D I GFPGET EDF +T+ LI E F + F RPGTPAA M VP
Sbjct: 295 EARPDIQISSDFIVGFPGETTEDFEKTMKLIAEVNFDVSYSFIFSARPGTPAADMVDDVP 354
Query: 393 SAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPS 449
A K+R L +A M G +RI + + + L G T+ V
Sbjct: 355 EADKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGTSRKSLMELSGRTENNRVVNFEG 414
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIKILNQV 481
T +M+G V+I V S+ G++++ +++
Sbjct: 415 TPDMVGKFVDVEIVDVYTNSLRGKIVRTEDEM 446
>gi|239637612|ref|ZP_04678584.1| conserved hypothetical protein [Staphylococcus warneri L37603]
gi|239596830|gb|EEQ79355.1| conserved hypothetical protein [Staphylococcus warneri L37603]
Length = 448
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 213/445 (47%), Gaps = 26/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T+ T GC N ++E + Y D AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIR 62
Query: 117 ---AKKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ E+ GV +V G Q ++++ ++E K +
Sbjct: 63 RAIRKNPDAVVCVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLDYIDEFQKERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ +K LD+P ++ L I GC CT+C ARG + S E +V +
Sbjct: 123 GNIMKNRKYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
T++ G KE+ L+ TG YG+D+ NL LL + DG +RI +
Sbjct: 182 TTLVNAGYKEIVLTGIHTGGYGQDLKNYNLAQLLRDLDQ---VDGLERIRISSIEASQLT 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + ++ E R + LHVP+QSGSD VL M R+YT+ F + L E +P + I
Sbjct: 239 DEVIDVLE--RSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPDVAIT 296
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
+D+I GFPGET+E+F +T + I +++F ++H+ + R GTPAARM ++ + +R
Sbjct: 297 SDVIVGFPGETEEEFQETYDFIVKHQFSELHVFPYSSRIGTPAARMDNQIDEDIKNERVH 356
Query: 402 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
+L ++ + E V + E LVG+ Y++V T +++G
Sbjct: 357 KLIALSDQLAKEYASKFENEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGTEDLIGQIIK 416
Query: 460 VKITSVGRWSVFGEVIKILNQVDDK 484
VKI +G+ I+I+ +K
Sbjct: 417 VKIQKADYPLNYGKAIRIVEHATNK 441
>gi|399924401|ref|ZP_10781759.1| Fe-S oxidoreductase [Peptoniphilus rhinitidis 1-13]
Length = 432
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/432 (29%), Positives = 214/432 (49%), Gaps = 36/432 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC---- 114
+T + T GC NQ +SE M+ GY DN E +D++++NT + + K
Sbjct: 3 KTFSILTLGCKVNQYESEAMSELFEKRGYKEVDNDEFSDVYIVNTCTVTNLSDRKSRQFI 62
Query: 115 -KSAKKP----LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLL 167
KS KK +VV GC Q S ++K +EGV +V G + +++V+++EE H
Sbjct: 63 RKSKKKNPDSVVVVVGCYSQVSPEEVKNIEGVDVVIGTTERNKIVDLIEEFKDSH----- 117
Query: 168 HRKKLPAL-DLPKVRR----------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
KK+ + DL VR N+ + + GC CTYC ARG + S +
Sbjct: 118 --KKINIVKDLKDVREFANTTNFDNNNRTRAYMKVQDGCNRFCTYCIIPFARGPIRSREI 175
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
+ V R + +G KE+ L+ G++G D+G I L +AE+ DG +R+
Sbjct: 176 DDAVREARILADNGFKEIVLTGIHIGSFGMDMGDMRLIDLIENIAEI--DGIKRIRLSSV 233
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
P I + E + L+ + H+ +QSGS+ +L AMNR YT ++ + + + +
Sbjct: 234 EPIIITDEFMERS--LKTEKLCDHFHLSLQSGSNNILKAMNRRYTREEYIEKANIIRKYM 291
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
P + TDII GFPGE++EDF +++++++ F ++H+ ++ R T AA MK ++ +
Sbjct: 292 PYAGLTTDIIVGFPGESEEDFEDSMSIVRKVGFSRIHVFKYSKRKNTKAAAMKNQIDGNI 351
Query: 396 VKKRSRELTSVFEAFTPYLGMEG-RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
K+RS +L ++ E + E ++ + + E D G+T Y++V S ++
Sbjct: 352 KKERSEKLIALGEEYQKIFERENMKIPKSVLFEEEHDK-EYYGYTTNYIRVKANSDIDIK 410
Query: 455 GTSALVKITSVG 466
VKI G
Sbjct: 411 NKIKNVKILDTG 422
>gi|389879388|ref|YP_006372953.1| RNA modification protein [Tistrella mobilis KA081020-065]
gi|388530172|gb|AFK55369.1| RNA modification protein [Tistrella mobilis KA081020-065]
Length = 467
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 212/456 (46%), Gaps = 55/456 (12%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-----------QSA 106
T+ +Y+KT+GC N DSE M+ L+A G+A T+ +E+AD+ ++NT S
Sbjct: 2 TKKLYIKTYGCQMNVYDSERMSDVLAAQGFAPTEVAEDADLVILNTCHIREKAAEKVYSD 61
Query: 107 MDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSI----------VGVQQIDRVVEVVE 156
+ L A A + + V GCV Q EGV I G Q R+ ++VE
Sbjct: 62 LGRLRAAGGPAGRLIAVGGCVAQA-------EGVEIRTRAPFVDIVFGPQTYHRLADMVE 114
Query: 157 ETLKGHEVRLLHRKKLPALD-LPKVRRNK-FVEILPINVGCLGACTYCKTKHARGHLGSY 214
+G V D LP + + + GC CT+C + RG S
Sbjct: 115 RATRGQAVVETDFPTEAKFDHLPTATGQRGHTAFVAVQEGCDKFCTFCVVPYTRGAEYSR 174
Query: 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAY--GRDIGVNLPI------LLNAIVAELPPD 266
+++ +R + A+GV+EV L ++ AY G P L +AE+ D
Sbjct: 175 PAGAILDEIRALAANGVREVMLLGQNVNAYHGAAPEGARGPAGDWTLARLARAIAEI--D 232
Query: 267 GSTMLRIGMTNPPFILEHLKEIAEVLRH---PCVYSFLHVPVQSGSDAVLSAMNREYTLS 323
G +R ++P + L +L H P + +LH+PVQSGSD +L AMNR++T
Sbjct: 233 GIARIRYTTSHPRDMGGDL-----ILAHRDLPQLMPYLHLPVQSGSDRILKAMNRKHTAE 287
Query: 324 DFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383
D+ +VD L E+ P M ++ D I GFPGE+D DF T+ L++ + + ++ PRPGT
Sbjct: 288 DYLRIVDRLREVRPDMAMSGDFIVGFPGESDADFEATMRLVERVDYALAYSFKYSPRPGT 347
Query: 384 PAARMK-KVPSAVVKKRSRELTSVF----EAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
PAA ++ +VP V +R + L + AF M GR + + +VG
Sbjct: 348 PAADLEDQVPDEVKSERLQRLQDLLSSQQRAFN--ASMTGRRLPVLLERPGRHAGQMVGR 405
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 474
+ V+V + G V I +V +S+ G +
Sbjct: 406 SPYMQAVVVDAPAEAAGRMVEVDIDTVNSFSLNGRI 441
>gi|334340539|ref|YP_004545519.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
gi|334091893|gb|AEG60233.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum ruminis
DSM 2154]
Length = 449
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/430 (28%), Positives = 213/430 (49%), Gaps = 28/430 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------IAKC 114
TFGC N+ DSE ++G L GY+ T++ E+ADI ++NT +T + K
Sbjct: 12 TFGCQMNERDSESLSGMLEDLGYSPTESQEDADIIILNTCCVRETAESKVFGLLGRLRKR 71
Query: 115 KSAKKPLV--VAGCVPQGSRDLKELEG----VSIV----GVQQIDRVVEVVEETLKGHEV 164
K+A L+ V GC+ Q K + V ++ V ++ R+++ V+E K +
Sbjct: 72 KTANPNLIIGVCGCMTQQEDAAKRIRHSFPFVDLIFGTHNVHELPRMLQQVQEN-KEAVL 130
Query: 165 RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ +K A D+P R++K + I GC C+YC + RG S E + ++
Sbjct: 131 EIWTSEKGIAEDVPVRRKDKLKAWVTIMYGCNNFCSYCIVPYVRGRERSRKPEDIFKEIK 190
Query: 225 TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
++ +G KEV L ++ +YG+D+ N + ++ +G +R ++P
Sbjct: 191 ELVKEGYKEVTLLGQNVNSYGKDLE-NTYRFADLLLDLDQIEGLERIRFMTSHPRDFDRR 249
Query: 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344
L ++ R C + H+PVQ+GS+ VL MNR YT + ++ + VPG I D
Sbjct: 250 LIQVIASCRKVCEH--YHLPVQAGSNRVLKQMNRGYTREHYLELIREIRRAVPGASITAD 307
Query: 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELT 404
I+ GFPGET+EDF QT++L+++ +F + R GTPAA+M++VP A+ +R + L
Sbjct: 308 IMVGFPGETEEDFEQTLDLVQQVRFDSAFTFIYNTRSGTPAAKMEQVPEAIKSERIQRLI 367
Query: 405 SVFE--AFTPYLGMEGRVERIWITEIA-ADGIHLVGHTKGYVQVLVPSTGNMLGTSALVK 461
+ +F EG+V + + + ++ L G T+ V+ + G+ V+
Sbjct: 368 ELQNKISFENNRMEEGKVLEVLVEGVTKSNADRLAGRTRTNKLVVFDGPLELSGSLVPVR 427
Query: 462 ITSVGRWSVF 471
I GR ++
Sbjct: 428 IKQ-GRLNLL 436
>gi|404316811|ref|ZP_10964744.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Ochrobactrum
anthropi CTS-325]
Length = 462
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 219/455 (48%), Gaps = 47/455 (10%)
Query: 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL- 110
P +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A + L
Sbjct: 15 PNVRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKASEKLY 74
Query: 111 -----IAKCKSAKKP------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV---- 152
+ K K A++ + VAGCV Q G L+ V +V G Q R+
Sbjct: 75 SALGRLRKMKDAREANGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLPNALA 134
Query: 153 -----EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 207
E V ET E + H LP+ + R+ L + GC CT+C +
Sbjct: 135 RVRSGEKVVETEYALEDKFEH---LPSPKREETRKRGVSAFLTVQEGCDKFCTFCVVPYT 191
Query: 208 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLNAIVA 261
RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ + +A
Sbjct: 192 RGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGAGDDGREWGLGELLFR---LA 248
Query: 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT 321
+P G LR ++P + + L LR + +LH+PVQSGSD +L AMNR +
Sbjct: 249 RIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMNRRHK 304
Query: 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP 381
++ +++ + E+ P + ++ D I GFPGETD+DF T+ L++ + Q + ++ PRP
Sbjct: 305 ADEYVRLIERIREVRPDLALSGDFIVGFPGETDQDFEDTMQLVRAVNYAQAYSFKYSPRP 364
Query: 382 GTPAARMKK-VPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGH 438
GTP A + V AV +R + L ++ + + M GR + + + +VG
Sbjct: 365 GTPGADLDDHVEEAVKDERLQRLQALLSEQQYAFQDSMIGREMDVLLEKPGRVAGQMVGR 424
Query: 439 TKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+ + V++ + + +G VKITS G S+ +
Sbjct: 425 SPWLLPVIIDDSNDRVGDIIHVKITSTGTNSLIAQ 459
>gi|424836394|ref|ZP_18261043.1| RNA modification protein [Clostridium sporogenes PA 3679]
gi|365977088|gb|EHN13191.1| RNA modification protein [Clostridium sporogenes PA 3679]
Length = 432
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 217/438 (49%), Gaps = 41/438 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCK-- 115
T GC N ++E M + GY + D +E AD+++INT + + +I++ +
Sbjct: 7 TLGCRVNVYETEAMTEKFIKQGYEVVDFNEVADVYVINTCTVTNMGDKKSRQMISRGRRQ 66
Query: 116 SAKKPLVVAGCVPQ-GSRDLKELEGVSIVG--------VQQIDRVVEVVEETLKGHEVRL 166
++K + V GC Q ++ ++EGV +V V I+R +E + ++ +V
Sbjct: 67 NSKAIIAVVGCYSQIAPEEVAKIEGVDVVLGTRNKGDIVYWINRAMEEKNQVIEVKDV-- 124
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
L K+ L++ + R +K L I GC C+YC ARG + S E ++ VR +
Sbjct: 125 LRNKEFEELNIEEYR-DKTRAFLKIQDGCNRFCSYCLIPFARGAVCSKKPEKVMEEVRKL 183
Query: 227 IADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284
G KE+ LS D +YG D+ NL +L I +G +RIG +P F E
Sbjct: 184 SKHGFKEIILSGIDIASYGFDLEGKYNLTSILEDID---KVEGIQRIRIGSIDPTFFTEE 240
Query: 285 LKEIAEVLRHPCVYSF---LHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
E++R + F H+ +QSG + L MNR+YT+ +R +V L + + I
Sbjct: 241 -----EIIRISKLKKFCPHFHLSLQSGCNETLKRMNRKYTVEQYREIVYNLRTNIEAVSI 295
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFPGET+E+FN+T +K+ K ++H+ +F PR T A +M+ +V + ++RS
Sbjct: 296 TTDIIVGFPGETEEEFNKTYEFLKDIKLSKMHVFKFSPRKATKAEKMENQVDGNIKEERS 355
Query: 401 RELTSVFEAFTPYLGMEGRVER----IWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGT 456
++ ++ A M +E+ ++ E GI G+T Y+++ S ++ G
Sbjct: 356 NKIINLDRALEKEF-MNKFIEKEMLVLYEQETKEKGI-FEGYTPNYIKIYAKSLKDITGE 413
Query: 457 SALVKITSVGRWSVFGEV 474
K+ V + + GE+
Sbjct: 414 IIRTKLKEVSKDFIKGEI 431
>gi|23099083|ref|NP_692549.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Oceanobacillus
iheyensis HTE831]
gi|81746368|sp|Q8EQR4.1|MIAB_OCEIH RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|22777311|dbj|BAC13584.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 519
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 140/453 (30%), Positives = 221/453 (48%), Gaps = 40/453 (8%)
Query: 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDT 109
KI + ++T+GC N+ D+E MAG LS GY T +EEADI L+NT ++A +
Sbjct: 71 KIGHGKKFLIRTYGCQMNEHDTEVMAGILSEMGYESTTVTEEADIILLNTCAIRENAENK 130
Query: 110 LIAKCKSAKKPLV---------VAGCVPQGS----RDLKELEGVSIV-GVQQIDRVVEVV 155
+ + K PL V GC+ Q R L++ + + ++ G I R+ +V
Sbjct: 131 VFGEIGHLK-PLKLENPDLIIGVCGCMSQEESVVDRILQKHQHIDLIFGTHNIHRLPHLV 189
Query: 156 EETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
+E L G E V + ++ +LPK R+ K + I GC CTYC RG S
Sbjct: 190 KEALFGKEMIVEVWSKEGDIIENLPKARKGKIKAWVNIMYGCDKFCTYCIVPMTRGKERS 249
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---IGVNLPILLNAIVA-ELPPDGST 269
+ ++ VR ++A G +EV L ++ AYG+D I L L+N I ++P
Sbjct: 250 RRPKDIIQEVRHLVAQGYQEVTLLGQNVNAYGKDFEDIEYGLGDLMNDIHKIDIP----- 304
Query: 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
+R ++P + L E+ + + + +H+PVQSGS +L MNR+YT ++ +V
Sbjct: 305 RVRFTTSHPRDFDDRLIEV--LAQGGNLLDHIHLPVQSGSSEILKKMNRKYTREEYLELV 362
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
+ +P + TDII GFP ET+E F +T+ L++E F + + PR GTPAAR K
Sbjct: 363 RKIRIAMPNATLTTDIIVGFPNETEEQFEETMTLVEEVGFEAAYTFIYSPREGTPAARKK 422
Query: 390 -KVPSAVVKKRSRELTSVFE-----AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYV 443
VP V K+R L + + Y G +V+ + E D L G+T+
Sbjct: 423 DDVPEEVKKQRLYRLNELVNKQSAASMKDYAG--KKVKVLVEGESKKDPEVLAGYTEKNK 480
Query: 444 QVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476
V + +G V+IT WS+ G +++
Sbjct: 481 LVNFKGPKSSIGKIVEVEITETKTWSLNGVMVE 513
>gi|282895989|ref|ZP_06304020.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
gi|281199099|gb|EFA73969.1| tRNA-i(6)A37 modification enzyme MiaB [Raphidiopsis brookii D9]
Length = 447
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 138/449 (30%), Positives = 222/449 (49%), Gaps = 44/449 (9%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
++ TFGC N++DSE MAG L G+ ++N + A++ + NT + D K S
Sbjct: 9 HITTFGCQMNKADSERMAGILEDMGFEWSENPQNANLIVYNTCTIRDNAEQKVYSYLGRQ 68
Query: 117 AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
AK+ LVVAGCV Q G L+ + + +V G Q +R+ ++++ G++V
Sbjct: 69 AKRKHQEPDLTLVVAGCVAQQEGQALLRRVPELDLVMGPQYANRLQDLLDSVFAGNQVVA 128
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESLVGRVR 224
+ D+ + RR+ V +NV GC CTYC + RG S T E++ G +
Sbjct: 129 TEEVHILE-DITQPRRDSRVTAW-VNVIYGCNERCTYCVVPNVRGVEQSRTPEAIRGEME 186
Query: 225 TVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAI--VAELPPDGSTMLRIGMT 276
+ G +E+ L ++ AYGRD+ G NL + + V ++P G +R +
Sbjct: 187 ILGQQGYREITLLGQNIDAYGRDLPGSTTEGRNLHTFTDLLYYVHDVP--GIERIRFATS 244
Query: 277 NPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P + E L K AE+ P + H+P QSG + +L AM+R YT +R +++T+
Sbjct: 245 HPRYFTERLIKACAEL---PKICEHFHIPFQSGDNEILKAMSRGYTQEKYRRIINTIRSY 301
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395
+P I+ D I GFPGET+ F T+ L+ + F ++ + + PRPGTPAA S
Sbjct: 302 MPDASISADAIVGFPGETEIQFQNTLQLVDDIGFDHLNTAAYSPRPGTPAALWDNQLSEE 361
Query: 396 VK----KRSRELTSVFEAFTP--YLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVP 448
+K +R L +V A YL GR+E + + + D ++G T+G
Sbjct: 362 IKSDRLQRLNHLVNVKAAQRSQRYL---GRMEEVLVEDQNPKDQSQVMGRTRGNRLAFFQ 418
Query: 449 STGNML-GTSALVKITSVGRWSVFGEVIK 476
N L G VKI V +S+ GE+++
Sbjct: 419 GDINQLRGRMVRVKIQEVRAFSLSGELVE 447
>gi|422343558|ref|ZP_16424486.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
gi|355378865|gb|EHG26045.1| MiaB-like tRNA modifying enzyme [Selenomonas noxia F0398]
Length = 435
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 209/432 (48%), Gaps = 40/432 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP---- 120
T GC NQ ++E M G A GY + E A++++INT S K + +
Sbjct: 7 TLGCKVNQFETETMEGLFRARGYEIVPFEEAAEVYVINTCSVTHLSDRKSRQLIRRAART 66
Query: 121 -----LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH----------- 162
+ VAGC Q +++ L GV +V G ++ ++V+ VE L+ +
Sbjct: 67 NPDACIAVAGCYAQVAPEEIRALAGVRVVIGTKERAQIVDYVEAALQKNAGVIGTITDIM 126
Query: 163 EVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ R+ + +P +P R L I GC CT+C +ARG + S + ++
Sbjct: 127 QARVF--EDIPLRSMPHRTRA----FLKIEDGCQNFCTFCIIPYARGPVKSRELSAVARE 180
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ + G EV L+ GAYG D+ P L +A L LR+G +
Sbjct: 181 MHLLTEAGFHEVVLTGIHLGAYGIDLAAR-PTLADACRTALGEAKLRRLRLGSLES---V 236
Query: 283 EHLKEIAEVLR-HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
E ++ E++R P + LH+P+Q+GSDAVL AMNR Y + F ++ + VPG+ +
Sbjct: 237 ELSADLLELIRTEPRFAAHLHLPLQAGSDAVLRAMNRHYDTAAFAQLIADVRRAVPGVAV 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRS 400
+TDII GFPGET+EDF ++ ++ F ++H+ + PR GTPAA R +VP AV K+R+
Sbjct: 297 STDIIVGFPGETEEDFAAGMDFVRAMGFARMHVFPYSPRRGTPAAQRADQVPPAVRKERA 356
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWITEIAADGIHLVGHTKGYVQVL--VPSTGNMLGT 456
+ ++ E + G V + E A DG+ G T+ Y++V P L
Sbjct: 357 ARMQALAEELAQDYHRAALGSVTEVLF-ETAEDGV-TNGLTETYIRVYTDAPVARGALVP 414
Query: 457 SALVKITSVGRW 468
LV++ G W
Sbjct: 415 MRLVRLYRDGVW 426
>gi|456064184|ref|YP_007503154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium CB]
gi|455441481|gb|AGG34419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [beta proteobacterium CB]
Length = 452
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/453 (30%), Positives = 224/453 (49%), Gaps = 43/453 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINT----QSAMDTLIA--- 112
+Y+KTFGC N+ DS MA L A G +TD E+AD+ L+NT + A D + +
Sbjct: 4 LYIKTFGCQMNEYDSGKMADLLHADEGMVMTDTPEDADVVLLNTCSIREKAEDKVFSDLG 63
Query: 113 ---KCKSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-GHE 163
+ K K L+ V GCV +G + + V +V G Q + R+ +++ + + G
Sbjct: 64 RLRELKKTKPNLLIGVGGCVASQEGQQIISRAPYVDVVFGPQTLHRLSDLIAQRRETGRS 123
Query: 164 VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
+ ++ D LP R+ + + I GC C+YC + RG S + ++
Sbjct: 124 QVDISFPEIEKFDHLPASRQTRGSAYVSIMEGCSKYCSYCVVPYTRGEEVSRPFDDVLTE 183
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPI----LLNAIVAELPPDGSTMLRIGMTNP 278
V + GVKE+ L ++ AY +G + I LL +AE+P G+
Sbjct: 184 VAGLATQGVKEIVLLGQNVNAYLGKMGGSEEIADFALLIEYIAEIP---------GVERI 234
Query: 279 PFILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
F H KE A+ L + P + S LH+PVQ SD+VLSAM R YT ++++++ +
Sbjct: 235 RFTTSHPKEFAQRLIDVYAKVPKLVSHLHLPVQHASDSVLSAMKRGYTALEYKSIIRKMR 294
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 392
+ P + +++D I GFPGETDEDF + + +++E F F RPGTPAA + P
Sbjct: 295 AVRPDLTLSSDFIVGFPGETDEDFAKLLKMVEELNFDNSFCFIFSARPGTPAANLSDDTP 354
Query: 393 SAVVKKRSRELTSVFEAFTPYL--GMEGRVERIWITEIAADGIHLVGHTKG--YVQVLVP 448
V KR + L ++ E+ + M G ER+ + +A DG++L G + P
Sbjct: 355 YEVKLKRLQTLLALVESQANQISKNMLGNTERVLVEGLAKDGVNLQGRAANNRVIHFTAP 414
Query: 449 STG--NMLGTSALVKITSVGRWSVFGEVIKILN 479
S +++G ++IT V +++ G+++ L
Sbjct: 415 SDDIESLVGQMVDIRITEVLNFTLRGDLMSELT 447
>gi|359148544|ref|ZP_09181685.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
sp. S4]
Length = 513
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 24/376 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINT----QSAMDT 109
G +T ++T+GC N DSE +AG L GY + + +EE AD+ + NT ++A +
Sbjct: 20 GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 79
Query: 110 LIA--------KCKSAKKPLVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 158
L K K + V GC+ Q RD K V +V G I ++ ++E
Sbjct: 80 LYGNLGRLAPMKTKRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 139
Query: 159 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
E ++ + L A LP R + + + ++VGC CT+C RG
Sbjct: 140 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 199
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R
Sbjct: 200 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 258
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + + IA + P V LH+P+QSGSD VL AM R Y F ++++ + +
Sbjct: 259 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 316
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
P I TDII GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M ++P V
Sbjct: 317 PEAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEV 376
Query: 396 VKKRSRELTSVFEAFT 411
V++R L ++ E +
Sbjct: 377 VQERYMRLVALQEEIS 392
>gi|339010557|ref|ZP_08643127.1| putative methylthiotransferase YqeV [Brevibacillus laterosporus LMG
15441]
gi|421873924|ref|ZP_16305533.1| RNA modification enzyme, MiaB family protein [Brevibacillus
laterosporus GI-9]
gi|338772712|gb|EGP32245.1| putative methylthiotransferase YqeV [Brevibacillus laterosporus LMG
15441]
gi|372457035|emb|CCF15082.1| RNA modification enzyme, MiaB family protein [Brevibacillus
laterosporus GI-9]
Length = 453
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/449 (30%), Positives = 224/449 (49%), Gaps = 38/449 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE-ADIWLINTQSAMDTLIAKCKSA-- 117
+ T GC N ++E + GY D ++ AD+++INT + +T K +
Sbjct: 4 VAFHTLGCKVNSYETEAIWNLFKQNGYERVDFEQDVADVYIINTCTVTNTGDKKSRQVIR 63
Query: 118 ----KKP---LVVAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
+ P + V GC Q S +++ E+ GV IV G Q DR++E V + ++G
Sbjct: 64 RAIRRNPEAIVAVTGCYAQTSPKEIAEIPGVDIVVGTQGRDRLLEYVAQ-IRGERTPINA 122
Query: 165 --RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
++ ++ LD+P ++ L I GC CT+C ARG + S ES++ +
Sbjct: 123 VGNIMKTREFEELDVPNFS-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRKPESVIEQ 181
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPP-DGSTMLRIGMTNPPF 280
++A+G E+ L+ TG YG D+ NL LL EL +G +RI
Sbjct: 182 AEKLVAEGYLEIVLTGIHTGGYGEDLEDYNLAKLL----VELEKVEGLKRIRISSIEASQ 237
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
I + + +A + R + LHVP+Q+G DAVL M R+YT ++F + + + +PG+
Sbjct: 238 ITDEV--VAVIDRSEKICRHLHVPLQAGDDAVLKRMRRKYTTAEFMERIHKVRKALPGVA 295
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
I TD+I GFPGET+E F N IKE F ++H+ + R GTPAARM+ +V V K+R
Sbjct: 296 ITTDVIVGFPGETEEQFVAGYNFIKELGFAELHVFPYSMRTGTPAARMEDQVDEEVKKER 355
Query: 400 SRELTSV-----FEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+L + E P++G +E ER + E G+ L+G++ Y+ V+ T +
Sbjct: 356 VAKLIELNQQLSVEYAQPFIGDVLEIIPERPY-KEDPTSGM-LMGYSDNYLNVVFEGTED 413
Query: 453 MLGTSALVKITSVGRWSVFGEVIKILNQV 481
M+G V++ V G ++++ +
Sbjct: 414 MIGKICKVRLDEVDAEYCKGTFVRVIESL 442
>gi|417643114|ref|ZP_12293176.1| tRNA methylthiotransferase YqeV [Staphylococcus warneri VCU121]
gi|445059524|ref|YP_007384928.1| hypothetical protein A284_05835 [Staphylococcus warneri SG1]
gi|330686099|gb|EGG97720.1| tRNA methylthiotransferase YqeV [Staphylococcus epidermidis VCU121]
gi|443425581|gb|AGC90484.1| hypothetical protein A284_05835 [Staphylococcus warneri SG1]
Length = 448
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 213/445 (47%), Gaps = 26/445 (5%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T+ T GC N ++E + Y D AD+++INT + +T K +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKEADYERVDFETNADVFVINTCTVTNTGDKKSRQIIR 62
Query: 117 ---AKKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV---- 164
K P + V GC Q S ++ E+ GV +V G Q ++++ ++E K +
Sbjct: 63 RAIRKNPDAVVCVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLDYIDEFQKERQPINGV 122
Query: 165 -RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ +K LD+P ++ L I GC CT+C ARG + S E +V +
Sbjct: 123 GNIMKNRKYEELDVPYFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
T++ G KE+ L+ TG YG+D+ NL LL + DG +RI +
Sbjct: 182 TTLVNAGYKEIVLTGIHTGGYGQDLKNYNLAQLLRDLDQ---VDGLERIRISSIEASQLT 238
Query: 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342
+ + ++ E R + LHVP+QSGSD VL M R+YT+ F + L E +P + I
Sbjct: 239 DEVIDVLE--RSNKIVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERITKLHEALPDVAIT 296
Query: 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSR 401
+D+I GFPGET+E+F +T + I ++KF ++H+ + R GTPAARM ++ + +R
Sbjct: 297 SDVIVGFPGETEEEFQETYDFIVKHKFSELHVFPYSSRIGTPAARMDDQIDEEIKNERVH 356
Query: 402 ELTSVFEAFTPYLG--MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSAL 459
+L ++ + E V + E LVG+ Y++V + +++G
Sbjct: 357 KLIALSDQLAKEYASKFEDEVLEVIPEEKGEKPNTLVGYADNYMKVEFEGSEDLIGQIIK 416
Query: 460 VKITSVGRWSVFGEVIKILNQVDDK 484
VKI +G+ I+I+ +K
Sbjct: 417 VKIQKADYPLNYGKAIRIVEHATNK 441
>gi|293400769|ref|ZP_06644914.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305795|gb|EFE47039.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 479
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 217/440 (49%), Gaps = 33/440 (7%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSA 117
Y++T+GC N+ DSE +AG L + ++ E+AD+ L+NT ++A D ++ + S
Sbjct: 46 YLRTYGCQANERDSETLAGILEELMFTPVEHPEQADLILLNTCAIRKNAEDKVLGEIGSL 105
Query: 118 KK-----PLVV---AGCVPQGSRD----LKELEGVSIV-GVQQIDRVVEVVEETLKGHE- 163
K+ P ++ GC+ Q L++ V+++ G + R+ E++ E + GH+
Sbjct: 106 KRLKRSNPDLIFGLCGCMAQEEDVVQVLLEKYRHVNLIFGTHNLHRLPELLYEVMVGHKR 165
Query: 164 -VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGR 222
V +L ++ +LP R K + I GC CTYC + RG S +E ++
Sbjct: 166 SVEVLSKEGEVIENLPVRRFGKHKAWVNIMYGCDKFCTYCIVPYTRGKERSRAMEDVLQE 225
Query: 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP-PFI 281
+R + DG KE+ L ++ +YG+D+ + ++ E G +R ++P F
Sbjct: 226 IRQLKQDGYKEITLLGQNVNSYGKDLHIEGG--FAKLLEETAKIGIERIRFTTSHPWDFS 283
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
E + IA R + F+H+PVQSG D +L M R YT + + T+ + E +P I
Sbjct: 284 DEMIDVIA---RFDNIMPFIHLPVQSGDDEILKIMGRRYTSAQYLTLFHKIKERMPECAI 340
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401
+TDII GFP E++E F T++L+KE +F + PR GTPAARM S VK+ R
Sbjct: 341 STDIIVGFPNESEEQFQHTLDLVKECQFDNAFTFIYSPREGTPAARMADSVSLEVKQ--R 398
Query: 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHT--KGYVQV--LVPSTGNML--G 455
L + + Y ++ + ++ DG GY + LV TG + G
Sbjct: 399 RLAELNACWNHYAHVKNEAYLGKVVKVLVDGASKKKANVWSGYTETNKLVNFTGEHVTAG 458
Query: 456 TSALVKITSVGRWSVFGEVI 475
VKIT+ +S+ GE I
Sbjct: 459 DIVKVKITACKTFSLDGEQI 478
>gi|269215580|ref|ZP_06159434.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
700122]
gi|269131067|gb|EEZ62142.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Slackia exigua ATCC
700122]
Length = 454
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/454 (30%), Positives = 211/454 (46%), Gaps = 46/454 (10%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEE--------------ADIWLINTQ 104
+T Y T+GC N+ DSE +AG L + G EE ADI L+
Sbjct: 10 KTFYTFTYGCQMNEHDSERIAGLLESCGCVPVSTLEESEIVIFMTCCVRERADIRLMGQV 69
Query: 105 SAMDTLIAKCKSA--KKPLVVAGCVPQGSRD----LKELEGVSIV-GVQQIDRVVEVVEE 157
S + + SA K+ + + GC+ G RD + L+ V +V G Q I+R+ ++
Sbjct: 70 STIKGVPLPEGSALDKRIVCIGGCI--GQRDGIALTETLDNVDVVFGTQNIERLPYLITG 127
Query: 158 TLK--GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
L GH V + + DLP R + LPI VGC CT+C + RG S
Sbjct: 128 VLSQGGHFVEIEQDSDSFSTDLPSDREKPWSAWLPITVGCDNFCTFCIVPYVRGRERSRA 187
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRI 273
+E +V +A+GVKE+ L ++ +YGRD+ +L A+ A G LR
Sbjct: 188 IEDVVMNAEAYVAEGVKEITLLGQNVNSYGRDLYGSPRFADVLKAVAAT----GVERLRF 243
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P + + + IA + LH+PVQSGSD +L MNR Y + + +V L
Sbjct: 244 ATSHPKDLTDEV--IAAFGELDNLMPALHLPVQSGSDRILEDMNRTYDSAHYLGLVRKLR 301
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 392
P + ++TD+I GFPGET+EDF T +LI+ + QV + R GTPAA M P
Sbjct: 302 ASCPDIALSTDVIVGFPGETEEDFQATYDLIESVGYSQVFTFIYSRREGTPAADMFDDTP 361
Query: 393 SAVVKKRSRELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447
V+++R L + E +LG + ++ ++ D LVGH+ V V
Sbjct: 362 RDVIQRRFDRLVELVQRKALEQNRRFLGRD--LDVLFEGPSRRDPSMLVGHSPHNVTVHA 419
Query: 448 PSTGNM-----LGTSALVKITSVGRWSVFGEVIK 476
P M +G + LV I W + G +++
Sbjct: 420 PLPAGMDASAFVGRTCLVHIDEAKTWYLSGTLVE 453
>gi|452990304|emb|CCQ98526.1| enzyme for ms(2)i(6)A formation for tRNA modification [Clostridium
ultunense Esp]
Length = 527
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 212/443 (47%), Gaps = 42/443 (9%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAK-- 118
T+GC N DSE MAG L GY + +EAD+ L NT ++A D + + K
Sbjct: 89 TWGCQMNVHDSEVMAGILEEMGYTPAEEEKEADLILFNTCAVRENAEDKVFGELGRLKVL 148
Query: 119 ---KP---LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 165
KP L +AGC+ Q ++ L+ V +V G I R+ ++ E L G E +
Sbjct: 149 KLEKPGLILGLAGCMSQEETVVNKILRSYPHVDLVFGTHNIHRLPILLREALFGKEMVIE 208
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+ +++ +LPK RR+ + I GC CTYC + RG S E ++ VR
Sbjct: 209 VWNKEGDIVENLPKQRRDGLKAWVNIMYGCDEFCTYCIVPYTRGKERSRRPEEILAEVRD 268
Query: 226 VIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVA-ELPPDGSTMLRIGMTNPPFI 281
+ G +E+ L ++ AYG+D N LL+ I ++P +R ++P
Sbjct: 269 LARRGYQEITLLGQNVNAYGKDFTDRDYNFADLLSDIHKIDIP-----WVRFTTSHPRDF 323
Query: 282 LEHLKEI----AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ L ++ +L H +H+PVQSGS+ +L MNR+YT ++ +V + E +P
Sbjct: 324 DDRLIDVLAQGGNLLEH------VHLPVQSGSNRILKRMNRKYTREEYLDLVRRMKERIP 377
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
G+ + TDII GFPGET+EDF +T+ L++E + + PR GTPAARM+ V
Sbjct: 378 GLTLTTDIIVGFPGETEEDFQETLRLVEEVGYDAAFTFIYSPRAGTPAARMEDNVSEEEK 437
Query: 397 KKRSRELTSVF--EAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNM 453
K+R L + + ++GRV + + E D L G T+ V
Sbjct: 438 KERLNRLNELLAKQGRKKNESLKGRVVEVLVEGESKKDPTILSGRTRNNKLVHFRGAKEW 497
Query: 454 LGTSALVKITSVGRWSVFGEVIK 476
G V+IT W + GE ++
Sbjct: 498 TGRFIRVRITEPKTWVLMGEAVE 520
>gi|218531460|ref|YP_002422276.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium extorquens CM4]
gi|218523763|gb|ACK84348.1| RNA modification enzyme, MiaB family [Methylobacterium extorquens
CM4]
Length = 462
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 205/439 (46%), Gaps = 37/439 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NT + K S
Sbjct: 21 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 80
Query: 117 -----------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+ +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 81 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 137
Query: 163 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 138 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 196
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 197 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 256
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 257 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 314
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 396
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 315 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 374
Query: 397 KKRSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + + A+ G + I + + + G T V + +
Sbjct: 375 TERLAALQDLLDRQRHAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 432
Query: 453 MLGTSALVKITSVGRWSVF 471
+GT V+IT G S+F
Sbjct: 433 TIGTVVPVRITRAGSNSLF 451
>gi|78042734|ref|YP_360230.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Carboxydothermus hydrogenoformans Z-2901]
gi|123576193|sp|Q3ACA4.1|MIAB_CARHZ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|77994849|gb|ABB13748.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Carboxydothermus
hydrogenoformans Z-2901]
Length = 440
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 210/435 (48%), Gaps = 38/435 (8%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL-------- 110
++ Y+ T GC N DSE +AG L + G+ + + AD+ +INT S +T
Sbjct: 4 KSYYIITHGCQMNVHDSETIAGILESMGFVPSPEEKTADLIIINTCSVRETAENKVFTKI 63
Query: 111 --IAKCKSAKKPLV--VAGCVPQGSRDLKEL-----EGVSIVGVQQIDRVVEVVEETLKG 161
+ K K LV V GC+PQ + K L I G + + +++E +
Sbjct: 64 GELKKLKRENPDLVIGVGGCIPQQEKVAKRLLERFPHLDFIFGTHNLPELPKILERVFEK 123
Query: 162 HEVRLLHR--------KKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
HE R+L + +P P VR +V I+ GC CTYC + RG S
Sbjct: 124 HE-RVLEVWQSEGQIVEGIPVKREPGVR--AWVTIM---YGCNNFCTYCIVPYVRGRERS 177
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 273
E ++ +R ++A+G +EV L ++ +YG+D+ P+ + DG +R
Sbjct: 178 RKKEDILQEIRQLVAEGYREVTLLGQNVNSYGKDLK-GKPMFAELLADIEKIDGLWRVRF 236
Query: 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P + + + E+ R C + LH+PVQ+GS+ +L AM+R YT + +V+ +
Sbjct: 237 TTSHPRDLTDDVIEVMASSRKICEH--LHLPVQAGSNKILKAMHRGYTREYYLNLVEKIR 294
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVP 392
+P + TDII GFPGET+EDF QT++L+++ ++ + R GTPAA MK +VP
Sbjct: 295 AKIPKVSFTTDIIVGFPGETEEDFEQTLDLVRKVRYDSAFTFVYNKRTGTPAAEMKDQVP 354
Query: 393 SAVVKKRSRELTSVFEAFTPYLGM--EGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPS 449
V +R +EL + + L EG + I + + D L G T+ V+
Sbjct: 355 EEVKSRRIQELIELQNGISLELNKNEEGNIHEILVEGKSKTDETKLAGRTRTNKLVVFNG 414
Query: 450 TGNMLGTSALVKITS 464
+++G VKIT
Sbjct: 415 NEDLVGKLVKVKITE 429
>gi|289768676|ref|ZP_06528054.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
TK24]
gi|289698875|gb|EFD66304.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Streptomyces lividans
TK24]
Length = 505
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 186/375 (49%), Gaps = 23/375 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTQSAMDTLIAKC 114
GT T ++T+GC N DSE ++G L GY A +AD+ + NT + + K
Sbjct: 12 GTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVRENADNKL 71
Query: 115 ---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETL 159
K A +P + V GC+ Q RD +K V +V G I ++ ++E
Sbjct: 72 YGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVLLERAR 131
Query: 160 KGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVE 217
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 132 VQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRRPG 191
Query: 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R +
Sbjct: 192 DILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DREAFSKLLRACGNINGLERVRFTSPH 250
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + + IA + P LH+P+QSGSD VL AM R Y + +++ + +P
Sbjct: 251 PRDFTDDV--IAAMAETPNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLGIIEKVRAAIP 308
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+ ++P AVV
Sbjct: 309 HAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAEMENQIPKAVV 368
Query: 397 KKRSRELTSVFEAFT 411
++R L ++ E +
Sbjct: 369 QERYERLVALQEEIS 383
>gi|170747073|ref|YP_001753333.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Methylobacterium radiotolerans JCM 2831]
gi|229890617|sp|B1LWE8.1|MIAB_METRJ RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|170653595|gb|ACB22650.1| RNA modification enzyme, MiaB family [Methylobacterium
radiotolerans JCM 2831]
Length = 445
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 217/444 (48%), Gaps = 39/444 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA----- 112
++K++GC N D+ MA L A GY TD E+AD+ ++NT + A + + +
Sbjct: 5 FVKSYGCQMNAYDAARMADVLGAEGYTATDTVEDADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 113 -------KCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
K + +VVAGCV Q G+ V +V G Q R+ +++ +
Sbjct: 65 RVLKGERKAQGLDTRIVVAGCVAQAEGAEIQARQPAVDVVVGPQSYHRLPDLLA---RSR 121
Query: 163 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E R++ + P D LP+ R L + GC C +C + RG S +V +
Sbjct: 122 ERRVVD-TEFPVEDKFDHLPRRRTLGASAFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV---AELPPDGSTMLRIGM 275
++ + GV+E+ L ++ AY D P L +V A++P G +R
Sbjct: 181 VLAEAEKLADGGVREITLIGQNVNAYHGDGPDGAPAGLADLVRAVAKIP--GIARIRYTT 238
Query: 276 TNP-PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
++P F ++ AEV P + +LH+PVQSGSD +L+AMNR++T +R ++D +
Sbjct: 239 SHPNDFDDALIRAHAEV---PALMPYLHLPVQSGSDRILAAMNRKHTGDAYRRLIDRIRA 295
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPS 393
P + +++D I GFPGETD DF +T+ L+++ F ++ RPGTPAA R +VP
Sbjct: 296 ARPDIALSSDFIVGFPGETDADFAETLRLVRDVGFESAFSFKYSTRPGTPAADRTDQVPE 355
Query: 394 AVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTG 451
AV+ R EL ++ ++ GRV + + + + G T + V +
Sbjct: 356 AVMAARLAELQALLDSQRHAYQRAAAGRVFDVLVEKRGRHPGQVAGKTPHLLAVQFDAAP 415
Query: 452 NMLGTSALVKITSVGRWSVFGEVI 475
+ +G V+IT G S+FGE++
Sbjct: 416 HHIGQVVPVRITEAGSNSLFGELV 439
>gi|329939964|ref|ZP_08289246.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
gi|329300790|gb|EGG44686.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Streptomyces
griseoaurantiacus M045]
Length = 499
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 194/382 (50%), Gaps = 33/382 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINT----QSAMD 108
+P ++ ++T+GC N DSE ++G L GY A D+ +AD+ + NT ++A +
Sbjct: 3 VPAPKSYEIRTYGCQMNVHDSERLSGLLEDAGYVRAPEDSDGDADVVVFNTCAVRENADN 62
Query: 109 TLIAKC-----KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 157
L + A +P + V GC+ Q RD +K+ V +V G I ++ ++E
Sbjct: 63 RLYGNLGRLAPRKASRPGMQIAVGGCLAQKDRDTIVKKAPWVDVVFGTHNIGKLPVLLER 122
Query: 158 TLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 123 ARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEKDRR 182
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTMLRI 273
++ V ++A+GV E+ L ++ AYG DIG LL A + + R+
Sbjct: 183 PGDVLAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGLERV 237
Query: 274 GMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
T+P F + ++ +AE P V LH+P+QSGSD VL AM R Y + +++
Sbjct: 238 RFTSPHPRDFTDDVIEAMAET---PNVMPQLHMPLQSGSDTVLKAMRRSYRQERYLGIIE 294
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK- 389
+ +P I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA M+
Sbjct: 295 KVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAATMED 354
Query: 390 KVPSAVVKKRSRELTSVFEAFT 411
++P VV+ R L ++ E +
Sbjct: 355 QIPKKVVQARYERLVALQEEIS 376
>gi|188589299|ref|YP_001920259.1| hypothetical protein CLH_0864 [Clostridium botulinum E3 str. Alaska
E43]
gi|188499580|gb|ACD52716.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
Length = 434
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/433 (29%), Positives = 221/433 (51%), Gaps = 29/433 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ ++E M + GY++TD + AD+++INT + + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 118 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 168
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 287
G KEV LS T +YG D+G + ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGAGVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 406
GFPGET+E+FN+T +K+ K +VH+ ++ PR GT AA M ++ + KRS+ L+ +
Sbjct: 302 GFPGETEEEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDKRSKILSEL 361
Query: 407 F-EAFTPYL-GMEGRVERIWITEIAAD--GIHLVGHTKGYVQVLVP-STGNMLGTSALVK 461
E ++ + GR + I ++ GI G+TK YV+ + ++ M+G
Sbjct: 362 NKENEVDFVKNLVGREMGVLIERECSNKPGI-FEGYTKNYVKAEISDASKEMIGKIMDCN 420
Query: 462 ITSVGRWSVFGEV 474
I + + G++
Sbjct: 421 IETYDENYIVGKI 433
>gi|62290991|ref|YP_222784.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
abortus bv. 1 str. 9-941]
gi|82700900|ref|YP_415474.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
melitensis biovar Abortus 2308]
gi|189025203|ref|YP_001935971.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Brucella
abortus S19]
gi|237816493|ref|ZP_04595486.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
gi|260546254|ref|ZP_05821994.1| RNA modification protein [Brucella abortus NCTC 8038]
gi|260755825|ref|ZP_05868173.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
gi|260759048|ref|ZP_05871396.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
gi|260884850|ref|ZP_05896464.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
gi|261215100|ref|ZP_05929381.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
gi|297247377|ref|ZP_06931095.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
str. B3196]
gi|376272127|ref|YP_005150705.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus A13334]
gi|423167886|ref|ZP_17154589.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI435a]
gi|423169738|ref|ZP_17156413.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI474]
gi|423175272|ref|ZP_17161941.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI486]
gi|423177878|ref|ZP_17164523.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI488]
gi|423179171|ref|ZP_17165812.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI010]
gi|423182302|ref|ZP_17168939.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI016]
gi|423186756|ref|ZP_17173370.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI021]
gi|423190808|ref|ZP_17177416.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI259]
gi|75496027|sp|Q57AB1.1|MIAB_BRUAB RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|123740938|sp|Q2YQS8.1|MIAB_BRUA2 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|229890451|sp|B2S9E5.1|MIAB_BRUA1 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|62197123|gb|AAX75423.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
gi|82617001|emb|CAJ12110.1| Deoxyribonuclease/rho motif-related TRAM:Protein of unknown
function UPF0004:tRNA-i(6)A37 modification enzyme
MiaB:Elongator [Brucella melitensis biovar Abortus 2308]
gi|189020775|gb|ACD73497.1| hypothetical protein BAbS19_I20150 [Brucella abortus S19]
gi|237788560|gb|EEP62775.1| RNA modification enzyme, MiaB family [Brucella abortus str. 2308 A]
gi|260096361|gb|EEW80237.1| RNA modification protein [Brucella abortus NCTC 8038]
gi|260669366|gb|EEX56306.1| RNA modification protein [Brucella abortus bv. 4 str. 292]
gi|260675933|gb|EEX62754.1| RNA modification protein [Brucella abortus bv. 6 str. 870]
gi|260874378|gb|EEX81447.1| RNA modification protein [Brucella abortus bv. 9 str. C68]
gi|260916707|gb|EEX83568.1| RNA modification protein [Brucella abortus bv. 3 str. Tulya]
gi|297174546|gb|EFH33893.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus bv. 5
str. B3196]
gi|363399733|gb|AEW16703.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Brucella abortus A13334]
gi|374535716|gb|EHR07237.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI486]
gi|374539635|gb|EHR11138.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI435a]
gi|374543417|gb|EHR14900.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI474]
gi|374549080|gb|EHR20526.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI488]
gi|374552115|gb|EHR23544.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI016]
gi|374552487|gb|EHR23915.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI010]
gi|374554578|gb|EHR25989.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI259]
gi|374557468|gb|EHR28864.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Brucella
abortus bv. 1 str. NI021]
Length = 467
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 136/459 (29%), Positives = 221/459 (48%), Gaps = 48/459 (10%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAM 107
SP+ T +++KT+GC N DS+ MA L+A GY TD ++AD+ L+NT + A
Sbjct: 17 SPR-ANTRKVFVKTYGCQMNVYDSQRMADSLAAEGYVATDTPDDADLVLLNTCHIREKAS 75
Query: 108 DTL------IAKCKSAK----KPLV--VAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVV 152
+ L + K + A+ K L VAGCV Q G L+ V +V G Q R+
Sbjct: 76 EKLYSALGRLRKMRDARAADGKELTIGVAGCVAQAEGQEILRRAPNVDLVIGPQTYHRLP 135
Query: 153 ---------EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCK 203
E V ET E + H LPA + R+ L + GC CT+C
Sbjct: 136 NALARVRGGEKVVETDYAIEDKFEH---LPAPRREETRKRGVSAFLTVQEGCDKFCTFCV 192
Query: 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY------GRDIGVNLPILLN 257
+ RG S +V+ +V + GV+E+ L ++ A+ GR+ G+ +
Sbjct: 193 VPYTRGSEVSRSVKQIVAEAERLADSGVRELTLLGQNVNAWHGEGEDGREWGLGELLFR- 251
Query: 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN 317
+A +P G LR ++P + + L LR + +LH+PVQSGSD +L AMN
Sbjct: 252 --LARIP--GIARLRYTTSHPRDMDDSLIAAHRDLRQ--LMPYLHLPVQSGSDRILKAMN 305
Query: 318 REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQF 377
R + ++ +++ + + P M ++ D I GFPGETD+DF T+ L+++ + Q + ++
Sbjct: 306 RRHKADEYLRLIERIRNVRPDMALSGDFIVGFPGETDQDFEDTMQLVRDVNYAQAYSFKY 365
Query: 378 YPRPGTPAARMKK-VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIH 434
PRPGTP A + V AV +R + L ++ A + M GR + + + +
Sbjct: 366 SPRPGTPGADLDDHVEEAVKDERLQRLQALLSAQQYAFQDSMIGRKMDVLLEKPGREAGQ 425
Query: 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGE 473
+VG + + V++ + +G VKI S G S+ +
Sbjct: 426 MVGRSPWLLPVIIDDNKDRVGDIIHVKIVSTGTNSLIAQ 464
>gi|229890681|sp|B7KVE0.2|MIAB_METC4 RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
Length = 446
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 205/439 (46%), Gaps = 37/439 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NT + K S
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 117 -----------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+ +VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGDRAESGQETRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 163 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVEEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGQLMDALSAVPGLLRLRYTTSH 240
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILHAMNRRHTGDAYRRLIERIRNARP 298
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 396
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETLRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 397 KKRSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + + A+ G + I + + + G T V + +
Sbjct: 359 TERLAALQDLLDRQRHAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 416
Query: 453 MLGTSALVKITSVGRWSVF 471
+GT V+IT G S+F
Sbjct: 417 TIGTVVPVRITRAGSNSLF 435
>gi|392395125|ref|YP_006431727.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390526203|gb|AFM01934.1| MiaB-like tRNA modifying enzyme [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 452
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 218/405 (53%), Gaps = 28/405 (6%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLV-- 122
T GC NQ++SE + GY + ++E+AD+ ++NT + +T AK + + +V
Sbjct: 32 TLGCKVNQTESEALGQLFRNNGYHVVSSTEKADVVVVNTCTVTNTGDAKSRQTIRRMVKA 91
Query: 123 -------VAGCVPQGSR-DLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVR-----LLH 168
V GC Q + ++ ++EGV +V G Q R++E++ + + + + +
Sbjct: 92 HPDAFVVVMGCYAQTAPGEILDIEGVDLVLGTQDRGRILELIAQVKQEQQPKNSVHAIWD 151
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
K L L + ++ L I GC CTYC +ARG + S E+ V ++A
Sbjct: 152 AKAFEELPLIE-EESRTRATLKIQEGCNKFCTYCIIPYARGPVRSRIPENAVTEAEKLVA 210
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPIL-LNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287
G KE+ L+ TG+YG D+G N + L ++A++ G LR+ P +E E
Sbjct: 211 AGYKEIVLTGIHTGSYGEDLGENWDLARLVKVLAQV--KGLHRLRLSSIEP---MEFTPE 265
Query: 288 IAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
+ +V+ HP V LH+P+Q GSDA+L+ M R Y + +F+ ++ L L+PG+ I TD+I
Sbjct: 266 LIDVIINHPTVCPHLHIPLQCGSDAILTRMKRPYAVKEFKELILRLNALLPGIAITTDVI 325
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTS 405
GFPGET+++F +++ ++ F VH+ + R GTPAA+ ++P+ + ++R ++L
Sbjct: 326 VGFPGETEQNFRESLETVRSCGFSGVHVFPYSKRKGTPAAKYPDQIPNKIKEQRVKDLMQ 385
Query: 406 VF-EAFTPYL-GMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 448
V ++ Y+ G+ + I ++ +G+ GHT+ Y+QV +P
Sbjct: 386 VARKSQEDYVRRFIGQTVEVLIERVSPEGV-AAGHTRNYIQVHLP 429
>gi|315651392|ref|ZP_07904417.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315486351|gb|EFU76708.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 485
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 195/384 (50%), Gaps = 31/384 (8%)
Query: 43 NHLSKTGSLSP-KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101
N + TG++ K P + + TFGC N DSE ++G LS GY + E+AD+ L
Sbjct: 31 NDIIHTGAIDRGKYPTYKVV---TFGCQMNARDSEKLSGILSGIGYTEAKSEEDADLVLF 87
Query: 102 NT----QSAMDTLIAKCKSAKKP--------LVVAGCVPQGSRDLKELEGVS-----IVG 144
NT ++A D L + KK + + GC+ Q + ++++++ + G
Sbjct: 88 NTCTVRENANDRLYGRVGQLKKSKEKNPDMIIGICGCMMQEAEEVEKIKKSYRHVDLVFG 147
Query: 145 VQQIDRVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 202
I ++ E++ + LK + V ++ + LP R+ F + I GC C+YC
Sbjct: 148 THNIYKLAEILFDHLKTKKQIVDVMESADMIVEKLPNKRQYAFKSGVNITFGCNNFCSYC 207
Query: 203 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--DIGVNLPILLNAIV 260
+ RG S E + ++ ++ADGVKEV L ++ +YG+ D N +LL+ +
Sbjct: 208 IVPYVRGKERSRKPEEITDEIKGLVADGVKEVMLLGQNVNSYGKGLDEKTNFAMLLDEVA 267
Query: 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY 320
DG LR +P + + + E+ + + C + LH+P+QSGS A+L MNR Y
Sbjct: 268 K---IDGLERLRFMTPHPKDLSDEVIEVMKNNKKICKH--LHLPLQSGSSAILKKMNRVY 322
Query: 321 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380
T + +V + +P + + TDII GFPGET+EDF T++++K+ ++ + R
Sbjct: 323 TKESYLDLVKRIKAAIPDISLTTDIIVGFPGETEEDFLDTLDVVKQVRYDSAFTFIYSKR 382
Query: 381 PGTPAARM-KKVPSAVVKKRSREL 403
GTPAA+M +++ ++K R L
Sbjct: 383 SGTPAAKMEEQIDPDIIKDRFDRL 406
>gi|251780327|ref|ZP_04823247.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084642|gb|EES50532.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 434
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 221/435 (50%), Gaps = 33/435 (7%)
Query: 65 TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAKCKSA 117
T GC NQ ++E M + GY++TD + AD+++INT + + +I+K +
Sbjct: 7 TLGCRVNQYETEAMTEKFIREGYSVTDFDDFADVYVINTCTVTNMGDKKSRQIISKARRT 66
Query: 118 KKPLVVA--GCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVV-----EETLKGHEVRLLH 168
++A GC Q ++ ++EGV +V G + +V V E+ ++ +L
Sbjct: 67 NSNAIIAVVGCYSQIAPEEVSKIEGVDVVLGTRNKGDIVYFVNKARDEKAIQVSVNEVLK 126
Query: 169 RKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA 228
K+ L++ + + +K L I GC CT+C +ARG S E ++ V+ +
Sbjct: 127 NKEFEELNIEEYQ-DKTRAFLKIQDGCNRFCTFCLIPYARGATCSKKPEKVIEEVKKLAE 185
Query: 229 DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKE 287
G KEV LS T +YG D+G ++ ++ +++ ++ DG +RIG P F + +
Sbjct: 186 HGFKEVILSGIHTASYGVDLGTDVTLI--SLLEDIEKIDGIDRVRIGSIEPAFFTDEVIN 243
Query: 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347
+ ++ C + H+ +QSGSDA L MNR YT ++ V TL + + + I TD+I
Sbjct: 244 KIKNMKKLCPH--FHLSLQSGSDATLKRMNRRYTADEYAKTVQTLRDNIQDVSITTDLIV 301
Query: 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTSV 406
GFPGET+++FN+T +K+ K +VH+ ++ PR GT AA M ++ + KRS+ L+ +
Sbjct: 302 GFPGETEDEFNETYEYLKKLKLTKVHLFKYSPRKGTKAAEMPNQIDGTIKDKRSKILSEL 361
Query: 407 FEA----FTPYLGMEGRVERIWITEIAAD--GIHLVGHTKGYVQVLVP-STGNMLGTSAL 459
+ F L GR + I ++ GI G+TK YV+ + ++ M+G
Sbjct: 362 NKENEVDFVKKLV--GREMDVLIERECSNKPGI-FEGYTKNYVKAEISDASKEMIGKIMD 418
Query: 460 VKITSVGRWSVFGEV 474
I + + G++
Sbjct: 419 CNIETYDENYIVGKI 433
>gi|399117018|emb|CCG19831.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Taylorella
asinigenitalis 14/45]
Length = 469
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 144/446 (32%), Positives = 219/446 (49%), Gaps = 40/446 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
+Y+KTFGC N+ DSE MA L+A G LTDN EEAD+ L+NT S + K S
Sbjct: 33 LYIKTFGCQMNEYDSEKMADVLNAEKGLELTDNPEEADVILLNTCSIREKAQEKVFSDLG 92
Query: 117 ---------AKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
+ V GCV +G+ L+ V IV G Q + R+ E++E+ K
Sbjct: 93 RINLLKKKKPDLLIGVGGCVASQEGATILQRAPYVDIVFGPQTLHRLPELIEQ--KESTG 150
Query: 165 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
R P ++ LP R N + I GC C+YC + RG S +E ++
Sbjct: 151 RAQVDVSFPEIEKFDHLPPARVNGPTAYVSIMEGCSKYCSYCVVPYTRGEEISRPLEDVL 210
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
V + GVKE+ L ++ AY +G I A++ EL + + RI +
Sbjct: 211 VEVADLADQGVKEINLLGQNVNAYRGTVGEQGEIADFAMLLELVHEIPGVERIR-----Y 265
Query: 281 ILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV L ++
Sbjct: 266 ITSHPKEMTKRLIEAHGKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRNLYKV 325
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 394
P + +++D I GFPGET+EDF T+ LIK+ + RPGTPAA + P
Sbjct: 326 RPDLTLSSDFIVGFPGETEEDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDDTPYE 385
Query: 395 VVKKRSRELTSVF----EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPS 449
V +R + L ++ AF+ M G +++ + + D L+G T+ V
Sbjct: 386 VKLERLQRLQALVNKQARAFSE--KMLGTNQKVLVEGFSKRDSEELMGRTENNRIVNFKG 443
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
+++G VKIT + S+ GE++
Sbjct: 444 PDSLVGQMVTVKITDIYTNSLRGELV 469
>gi|330828617|ref|YP_004391569.1| tRNA methylthiotransferase [Aeromonas veronii B565]
gi|406678174|ref|ZP_11085352.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AMC35]
gi|423200831|ref|ZP_17187411.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER39]
gi|423210697|ref|ZP_17197251.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER397]
gi|328803753|gb|AEB48952.1| tRNA methylthiotransferase [Aeromonas veronii B565]
gi|404615082|gb|EKB12055.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER397]
gi|404619402|gb|EKB16316.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AER39]
gi|404622860|gb|EKB19716.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Aeromonas
veronii AMC35]
Length = 477
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 147/456 (32%), Positives = 229/456 (50%), Gaps = 31/456 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT----QSAMDTLI- 111
++ +++KT+GC N+ DS MA L A GY LT+ EEAD+ L+NT + A + +
Sbjct: 2 SKKLHIKTWGCQMNEYDSSKMADLLDASNGYTLTEEPEEADVLLLNTCSIREKAQEKVFH 61
Query: 112 -----AKCKSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
K K+ K LV V GCV +G + V IV G Q + R+ +++E +G
Sbjct: 62 QLGRWKKLKANKPGLVIGVGGCVASQEGDAIRQRAPYVDIVFGPQTLHRLPAMIKEVQEG 121
Query: 162 HEVRL-LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
++ + ++ D LP+ R + I GC CTYC + RG S ++ +
Sbjct: 122 RGAQVDIAFPEIEKFDSLPEPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPLDDV 181
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
+ + + GV+EV L ++ AY D G+ L +VA + DG +R +
Sbjct: 182 LYEIAQLAQQGVREVNLLGQNVNAYRGPTFDGGICTFAELLRLVAAI--DGIDRIRYTTS 239
Query: 277 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P +E +I EV + P V SFLH+PVQSGSD +L+ M R +T+ ++++ + L
Sbjct: 240 HP---IEFTDDIIEVYKDTPEVVSFLHLPVQSGSDRILTMMKRPHTILEYKSKIRRLRAA 296
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 394
P + I++D I GFP ETDEDF T+ LI++ F F PRPGTPAA M V
Sbjct: 297 RPDITISSDFIVGFPNETDEDFEATMKLIEDVGFDMSFSFIFSPRPGTPAADMPDDVDME 356
Query: 395 VVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTG 451
V K R L V +G M G +RI + + D + L G T+ V
Sbjct: 357 VKKARLARLQHVINNQAMQIGRAMLGTTQRILVEGPSKLDPMQLCGRTENNRVVNFEGQH 416
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIAS 487
++G A V+IT V S+ G+ I+ ++++ +IA+
Sbjct: 417 TLIGGFADVEITEVRPNSLRGKFIRGESEMNLRIAT 452
>gi|119510198|ref|ZP_01629336.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
gi|119465148|gb|EAW46047.1| tRNA-i(6)A37 modification enzyme MiaB [Nodularia spumigena CCY9414]
Length = 454
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 140/458 (30%), Positives = 220/458 (48%), Gaps = 38/458 (8%)
Query: 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKC 114
I ++ TFGC N++DSE MAG L G+ +++ +AD+ L NT + D K
Sbjct: 2 ITSNRHYHIITFGCQMNKADSERMAGILEDMGFEWSEDPNDADLILYNTCTIRDNAEHKV 61
Query: 115 KS-----AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETL 159
S AK+ L+VAGCV Q G L+ + + +V G Q +R+ +++ L
Sbjct: 62 YSYLGRQAKRKQEEPGLTLIVAGCVAQQEGEALLRRVPELDLVMGPQHANRLQDLLTSVL 121
Query: 160 KGHEVRLLHRKKLPALDLPKVRRNKFVEI-LPINVGCLGACTYCKTKHARGHLGSYTVES 218
G++V + D+ + RR+ V + I GC CTYC + RG S T E+
Sbjct: 122 NGNQVVATESVHIME-DITQPRRDSSVTAWVNIIYGCNERCTYCVVPNVRGVEQSRTPEA 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLP--------ILLNAIVAELPPDGSTM 270
+ + + G KE+ L ++ AYGRD+ P L V ++P G
Sbjct: 181 IRAEMEELGRQGYKEITLLGQNIDAYGRDLPGTTPEGRHLHNFTDLLYYVHDIP--GIER 238
Query: 271 LRIGMTNPPFILEHL-KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVV 329
LR ++P + E L K AE+ P V H+P QSG + +L AM+R YT +R ++
Sbjct: 239 LRFATSHPRYFTERLIKACAEL---PKVCEHFHIPFQSGDNELLKAMSRGYTHEKYRRII 295
Query: 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389
DT+ +P I+ D I GFPGET+ F T+ L+++ F ++ + + PRPGTPAA
Sbjct: 296 DTIRRYMPDASISGDAIVGFPGETEAQFENTLKLVEDIGFDLLNTAAYSPRPGTPAALWS 355
Query: 390 KVPSAVVK----KRSRELTSVFEAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YV 443
S VK +R L +V + M GR+E + + + + D ++G T G +
Sbjct: 356 NQLSEEVKSDRLQRLNHLVNVKASERSQRYM-GRIEDVLVEDQNSKDPTQVMGRTGGNRL 414
Query: 444 QVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 481
+ G VKIT V +S+ GE +++ V
Sbjct: 415 TFFTGDISQLKGQIVKVKITEVRAFSLTGEPVEVRQAV 452
>gi|346310403|ref|ZP_08852419.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
gi|345897693|gb|EGX67604.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Collinsella tanakaei YIT
12063]
Length = 452
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 187/378 (49%), Gaps = 25/378 (6%)
Query: 51 LSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---QSAM 107
++ I +T +++TFGC N DSE ++G L + G +ADI + T + A
Sbjct: 1 MNSSILSGKTYFIRTFGCQMNLHDSERVSGLLDSLGCLEVGEPSDADIVIFMTCCVREAA 60
Query: 108 DT-LIAKCKSAK---------KPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEV 154
DT L +C S K + + V GC+ Q G L L+ V ++ G I V E+
Sbjct: 61 DTRLYGQCSSCKSLPKSPSGRRVIAVGGCIAQRDGEGLLTNLDNVDVIFGTHSIAHVGEL 120
Query: 155 VEETLKG--HEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 212
+ + + H VR + A +P R F +PI GC C+YC + RG
Sbjct: 121 IAQAFEDGDHHVRCEEIEDKGATSMPWHRATTFHSWVPIMTGCNNFCSYCIVPYVRGREK 180
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 272
S E +V V ++ V+E+ L ++ +YGRDI P + + A + G +R
Sbjct: 181 SRPFEQIVDEVAGLVRSDVREITLLGQNVNSYGRDI-FGKPRFADLLRA-VGETGIERIR 238
Query: 273 IGMTNPPFIL-EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
++P +L E + +A+V P V LH+ VQSGS VL MNR YT + +V +
Sbjct: 239 FTSSHPKDLLPETINAMADV---PAVMPHLHLAVQSGSTRVLKEMNRRYTREQYIDLVRS 295
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKK- 390
+ E +PG+ + TDII GFPGET+EDF QT++L +E ++ Q + R GTPAA +
Sbjct: 296 IREKIPGIALTTDIIVGFPGETEEDFLQTLSLAEEVRYAQAFTFIYSKREGTPAAMIDDP 355
Query: 391 VPSAVVKKRSRELTSVFE 408
P V+ R L SV E
Sbjct: 356 TPHDVILDRFNRLVSVIE 373
>gi|254562377|ref|YP_003069472.1| tRNA modification enzyme MiaB [Methylobacterium extorquens DM4]
gi|254269655|emb|CAX25627.1| tRNA modification enzyme MiaB, putative isopentenyl-adenosine A37
tRNA methylthiolase [Methylobacterium extorquens DM4]
Length = 446
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 133/439 (30%), Positives = 204/439 (46%), Gaps = 37/439 (8%)
Query: 62 YMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS----- 116
Y+K++GC N D+ MA L+A GY+ TD EEAD+ ++NT + K S
Sbjct: 5 YVKSYGCQMNAYDAGRMADVLAAEGYSATDTVEEADVVVLNTCHIREKAAEKVYSELGRL 64
Query: 117 -----------AKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
+VVAGCV Q G L V +V G Q R+ +++ ++
Sbjct: 65 RVLKGERAESGQDTRIVVAGCVAQAEGREILSRAPAVDVVVGPQSYHRLPDLLRQS---R 121
Query: 163 EVRLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
E R++ + PA D LP R L + GC C +C + RG S +V +
Sbjct: 122 ETRVVD-TEFPAEDKFDHLPARRNRGVTGFLTVQEGCDKFCAFCVVPYTRGAEVSRSVAA 180
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP-DGSTMLRIGMTN 277
+V R ++ GV+E+ L ++ AY D P L ++ L G LR ++
Sbjct: 181 VVDEARRLVEGGVREITLIGQNVNAYHGDGPDGAPATLGHLMDALSAVPGLLRLRYTTSH 240
Query: 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
P + L IA +P V +LH+PVQSGSD +L AMNR +T +R +++ + P
Sbjct: 241 PNDFADDL--IAAHATNPLVMPYLHLPVQSGSDRILQAMNRRHTGDAYRRLIERIRNARP 298
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVV 396
+ +++D I GFPGETD DF +T+ L+ + F ++ PR GTPAA R VP AV
Sbjct: 299 DIALSSDFIVGFPGETDADFAETMRLVSDIGFSAAFSFKYSPRAGTPAAEREDAVPEAVK 358
Query: 397 KKRSRELTSVFE----AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGN 452
+R L + + A+ G + I + + + G T V + +
Sbjct: 359 TERLAALQDLLDRQRHAYN--AASVGTLTEILVEKTGRHPGQVAGKTPHLQAVQFDAPAS 416
Query: 453 MLGTSALVKITSVGRWSVF 471
+GT V+IT G S+F
Sbjct: 417 TIGTVVPVRITRAGSNSLF 435
>gi|403667543|ref|ZP_10932848.1| (dimethylallyl)adenosine tRNA methylthiotransferase [Kurthia sp.
JC8E]
Length = 506
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 130/463 (28%), Positives = 227/463 (49%), Gaps = 37/463 (7%)
Query: 50 SLSPKIPGT---ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--- 103
S++P G ++TFGC N D+E MAG + GY T++ +A++ L+NT
Sbjct: 50 SINPTFEGMGKGRKFMIQTFGCQMNVHDTEVMAGIFESLGYEATEDVNDANVILMNTCAI 109
Query: 104 -QSAMDTLIA--------KCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQID 149
++A + + K K+ L V GC+ Q ++ LK + V I+ G I
Sbjct: 110 RENAENRVFGELGHLKPLKTKNPDLLLGVCGCMSQEEAVVNKILKTYDQVDIIFGTHNIH 169
Query: 150 RVVEVVEETLKGHE--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHA 207
++ E++ E E + + ++ ++PKVR + I GC CTYC +
Sbjct: 170 KLPEILHEAYMSKEMVIDVWSKEGDVIENMPKVRNGGTKAWVNIMYGCDKFCTYCIVPYT 229
Query: 208 RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPD 266
RG S + ++ VR + A G +E+ L ++ AYG+D+ G++ L ++ EL
Sbjct: 230 RGKERSRLPKDIIQEVRELAAQGYEEITLLGQNVNAYGKDLDGIDYG--LGNLMDELRLI 287
Query: 267 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFR 326
+R ++P +HL ++ + + + +H+PVQSGS ++L M R+YT +
Sbjct: 288 DVPRIRFTTSHPRDFDDHLIDV--LAKKGNLVEHIHLPVQSGSTSMLKIMARKYTRERYL 345
Query: 327 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 386
+V + + +P + + TDII GFP ET+E F +T++L +E F + PR GTPAA
Sbjct: 346 ELVSKIKKAIPDVALTTDIIVGFPNETEEQFEETLSLYREVGFEMAFTYIYSPREGTPAA 405
Query: 387 RMK-KVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIH------LVGHT 439
+MK VP V K R + L ++ F+ G + + + E+ DG L G+T
Sbjct: 406 KMKDNVPMDVKKDRLQRLNALVSEFS---GKALQQYKDQVVEVLVDGESKRNKDVLAGYT 462
Query: 440 KGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 482
+ V + ++G V++T +S+ GE + I+ +V+
Sbjct: 463 RRNKLVNFVAPKEVIGKRVYVRVTDCKTYSLNGEFVGIVEKVE 505
>gi|365105334|ref|ZP_09334581.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter freundii 4_7_47CFAA]
gi|363643349|gb|EHL82667.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Citrobacter freundii 4_7_47CFAA]
Length = 476
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 226/462 (48%), Gaps = 39/462 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTL------ 110
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NT S +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 111 ------IAKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+ K K+ K + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 120
Query: 162 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 121 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 180
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 271
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 181 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 236
Query: 272 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
R ++P +E +I EV R P + SFLH+PVQSGSD VL+ M R +T +++ ++
Sbjct: 237 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 293
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 389
L P +QI++D I GFPGET +DF QT+ LI + F + F RPGTPAA M
Sbjct: 294 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 353
Query: 390 KVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVL 446
VP K+R L +A M G +RI + + I L G T+ V
Sbjct: 354 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 413
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN 488
+M+G V+IT V S+ G+V++ +++ +IA +
Sbjct: 414 FEGNPDMVGKFVDVEITDVWTNSLRGKVVRTEDEMGLRIAES 455
>gi|338813200|ref|ZP_08625334.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
gi|337274807|gb|EGO63310.1| MiaB-like tRNA modifying enzyme [Acetonema longum DSM 6540]
Length = 430
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 218/445 (48%), Gaps = 47/445 (10%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCK---- 115
T+ T GC NQ ++E + G + GY L + AD+++INT S K +
Sbjct: 3 TVAFATLGCKVNQFETETLEGLFVSRGYELVAFQDYADVYVINTCSVTHIGEKKSRQLIR 62
Query: 116 --SAKKP---LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG----HEV 164
S + P +VV GC Q + + GV +V G Q ++V++VEE +K + V
Sbjct: 63 RASKQNPAAAVVVTGCYAQIEPGTIAGIPGVDVVVGTQDRQKIVDIVEEHVKTSLPINAV 122
Query: 165 RLL----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
R + H + +P +++N+ L I GC CTYC + RG L S ++ES++
Sbjct: 123 RSIMEADHFEDIPL----HIKQNRTRAFLKIQEGCRNYCTYCIIPYTRGPLRSRSLESIL 178
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM----- 275
R ++A G +E+ L+ GAYG+ + N+ L + + + L +G LR+G
Sbjct: 179 AECRKLVAAGFQEIVLTGIHLGAYGKGLEENVS-LTDVVRSILGVEGLARLRLGSLESLE 237
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+ P I L++ + RH LH+P+QSGSD +L MNR YT + ++ +
Sbjct: 238 ADQPLIDLMLQD-ERLCRH------LHLPLQSGSDEILRRMNRHYTCEQYAQLIRQIQRQ 290
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 394
VP + I+TD+I GFPGET+E F +T+ I + F +VHI + R GTPAA +V A
Sbjct: 291 VPDIAISTDVIIGFPGETEELFRETLAFITQMPFAKVHIFPYSRRKGTPAANFTGQVSEA 350
Query: 395 VVKKRSRELTSVFEAFT-----PYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPS 449
K R L E ++G +V +W E DGI L G T Y++V
Sbjct: 351 EKKCRFLALQEASEQIAIEFRQTFIGQHEKV--LW--EGCTDGI-LEGLTGNYIRVYADG 405
Query: 450 TGNMLGTSALVKITSVGRWSVFGEV 474
+M G V +T + ++G++
Sbjct: 406 HSSMPGRVDKVCLTRTFQDGIWGQL 430
>gi|303233246|ref|ZP_07319918.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
gi|302480636|gb|EFL43724.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium vaginae
PB189-T1-4]
Length = 459
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/373 (33%), Positives = 189/373 (50%), Gaps = 29/373 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD---------- 108
+T +KTFGC N DSE +AG L G EEADI + T S +
Sbjct: 14 KTYLIKTFGCQMNLHDSERVAGLLDDCGCNEVQTVEEADIVVFMTCSVREKADTHLYGAV 73
Query: 109 ---TLIAKCKSAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLK-- 160
++ K+ + V GC+ Q G+R K + V +V G + V E++ E +
Sbjct: 74 SNLVVVPAPPCGKRVIAVGGCIAQRDGARLKKHIPNVDVVFGTSALASVPELLCEAFESD 133
Query: 161 GHEVRL--LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
G EV + + + + + +LP R F +PI GC CT+C RG S E
Sbjct: 134 GSEVFVDTVEKNRGFSCELPSKREQYFHAWVPIMTGCNNFCTFCIVPLVRGRERSRVFER 193
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+V V ++ DGV+EV L ++ +YGRD+ P + ++ E+ G +R +NP
Sbjct: 194 VVAEVARLVDDGVREVTLLGQNVNSYGRDL-YGKP-RFSELLREVGKTGIERIRFTSSNP 251
Query: 279 PFILEH--LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
L H ++ +AE P V LH+ VQSGS+ +L AM+R Y + +V+ L E +
Sbjct: 252 K-DLSHDTIRAMAET---PNVMPQLHLAVQSGSNRILRAMHRAYNREKYLSVIAELKEAI 307
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAV 395
PG+ ++TDII GFPGET+EDF QT++L+ E + + + RPGTPAA++ P V
Sbjct: 308 PGIALSTDIIVGFPGETEEDFLQTMSLVDEVGYASAYTFIYSKRPGTPAAKIVDTTPHEV 367
Query: 396 VKKRSRELTSVFE 408
+++R LT E
Sbjct: 368 IQERFERLTKRIE 380
>gi|428216689|ref|YP_007101154.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
gi|427988471|gb|AFY68726.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Pseudanabaena sp. PCC
7367]
Length = 475
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 137/449 (30%), Positives = 213/449 (47%), Gaps = 44/449 (9%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS-- 116
+ ++ TFGC N++DSE MAG L GY TD++ +AD+ L NT S D K S
Sbjct: 33 QKYHIVTFGCQMNKADSERMAGVLENIGYRATDDANDADLVLYNTCSIRDNAEQKVYSYL 92
Query: 117 ---AKKP-------LVVAGCVPQGS-----RDLKELEGVSIVGVQQIDRVVEVVEETLKG 161
AK+ LVVAGCV Q R + EL+ V +G Q ++R+ +++ + G
Sbjct: 93 GRQAKRKHSNPGLTLVVAGCVAQQEGEALMRRVPELDLV--MGPQHVNRLDDLLAQVYAG 150
Query: 162 HEVRLLHRKKLPALDLPKVRRNKFVEILPINV--GCLGACTYCKTKHARGHLGSYTVESL 219
++V + + D+ K RR+ + +NV GC +CTYC RG S T ++
Sbjct: 151 NQVVAIEEAFIEE-DITKPRRSSTITAW-VNVIYGCNESCTYCIVPSVRGQEQSRTPAAI 208
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDI--------GVNLPILLNAIVAELPPDGSTML 271
+ + A G KE+ L ++ AYGRD+ L + + +G +
Sbjct: 209 RAEIEALAAQGYKEITLLGQNIDAYGRDLPPGGIGAGIGGKITLTDLLYYVHDVEGIERI 268
Query: 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331
R ++P + L I P + H+P QSG + +L M R YT +R ++D
Sbjct: 269 RFATSHPRYFSSRL--IHACAELPKLCEHFHIPFQSGDNELLKDMKRGYTHEKYRRIIDQ 326
Query: 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKV 391
+ E++P I+ D I FPGET+ F T+ L++E F V+ + + PRPGTPAA +
Sbjct: 327 IREIMPDAAISADAIVAFPGETEAQFENTLRLVEEISFDLVNTAAYSPRPGTPAAVWENQ 386
Query: 392 PSAVVKK-RSRELTSVF-----EAFTPYLGMEGRVERIWITEI-AADGIHLVGHTKG-YV 443
S VK R + L + E YL GR E I I I + ++G T+G +
Sbjct: 387 LSEEVKSDRLQRLNHLVNQQAAERSKRYL---GRTEEILIEGINPKNPNQVMGRTRGNRI 443
Query: 444 QVLVPSTGNMLGTSALVKITSVGRWSVFG 472
L ++G ++IT V +S+ G
Sbjct: 444 TFLNEQKPELIGQVVTLQITEVRPFSLTG 472
>gi|421074954|ref|ZP_15535973.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
gi|392527014|gb|EIW50121.1| RNA modification enzyme, MiaB family [Pelosinus fermentans JBW45]
Length = 435
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 215/442 (48%), Gaps = 38/442 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAK-- 118
+ T GC NQ ++E M G GY + AD+++INT S T + + KS +
Sbjct: 4 VAFTTLGCKVNQFETEVMEGLFKQRGYEKVPFDQVADVYVINTCSV--THLGEKKSRQII 61
Query: 119 ---------KPLVVAGCVPQGS-RDLKELEGVS-IVGVQQIDRVVEVVEET--------L 159
+ VAGC Q S ++++ +EGV IVG Q R+V++VE+ +
Sbjct: 62 RRAIRLNPEAVVAVAGCYAQISPKEIEAIEGVKVIVGTQDRKRIVDLVEQAAHCMSPVNV 121
Query: 160 KGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
+ + H + +P + P R L I GC CTYC +ARG L S ++ S+
Sbjct: 122 VTNIMNAEHFEDIPLFEAPGRTR----AFLKIQEGCTNFCTYCIIPYARGPLRSRSLASI 177
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279
+ +IA G KE+ L+ GAYG D+ + L + + + L G LR+G
Sbjct: 178 IQETEKLIAAGFKEIVLTGIHLGAYGHDVEDKIT-LADVVRSILSIKGLVRLRLGSLESI 236
Query: 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339
I + L IA + + + S LH+P+Q+G A+L AMNR YTL +++ ++ + V +
Sbjct: 237 EISDEL--IALMKQDDRLCSHLHLPLQAGDAAILKAMNRHYTLDEYQQLITNIRNKVEDI 294
Query: 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398
I+TDII GFPGET E FN + +++ F ++HI + R GTPAA ++P K+
Sbjct: 295 AISTDIIVGFPGETPEMFNNALTFVEKMNFSRMHIFPYSRRSGTPAAEYSGQIPEEEKKR 354
Query: 399 RSRELTSVFEA-----FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNM 453
R + + + E +L + V ++ E + + G T Y++V NM
Sbjct: 355 RVQIMQELAEKKADEFLQRFLNRQFTV--LFEMENQKNANIIDGLTGNYIRVYTNGNQNM 412
Query: 454 LGTSALVKITSVGRWSVFGEVI 475
G S V + R V+G+++
Sbjct: 413 QGKSYQVLLEKPYRDGVWGKIV 434
>gi|294500858|ref|YP_003564558.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
B1551]
gi|384045292|ref|YP_005493309.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB [Bacillus
megaterium WSH-002]
gi|294350795|gb|ADE71124.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium QM
B1551]
gi|345442983|gb|AEN88000.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB [Bacillus
megaterium WSH-002]
Length = 520
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 219/439 (49%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG GY TD+ E+A + L+NT ++A + +
Sbjct: 79 FYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGELGH 138
Query: 113 -KCKSAKKPLV---VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K ++P + V GC+ Q ++ L++ + V ++ G I R+ ++ E E
Sbjct: 139 LKALKRERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNEAYLAKE 198
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LP+ R+ + I GC CTYC + RG S E ++
Sbjct: 199 MVIEVWSKEGDVIENLPRARKGSVKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 258
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 259 EVRHLAAQGYKEITLLGQNVNAYGKDFE-DMTYGLGDLMDEIRKIDVARIRFTTSHPRDF 317
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 318 DDRLIEV--LAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRKIKEAIPTASL 375
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 376 TTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDNVPMEVKKERL 435
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V + +++G
Sbjct: 436 QRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNFKAPKSVIGQL 495
Query: 458 ALVKITSVGRWSVFGEVIK 476
VK+T W++ GE+++
Sbjct: 496 VKVKVTKAKTWTLNGEMVE 514
>gi|237730638|ref|ZP_04561119.1| MiaB protein [Citrobacter sp. 30_2]
gi|226906177|gb|EEH92095.1| MiaB protein [Citrobacter sp. 30_2]
Length = 490
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 226/462 (48%), Gaps = 39/462 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTL------ 110
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NT S +
Sbjct: 16 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 75
Query: 111 ------IAKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+ K K+ K + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 76 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 134
Query: 162 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 135 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 194
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGA-----YGRDIGVNLPILLNAIVAELPPDGSTML 271
+ ++ + + A GV+EV L ++ A Y IG + LL + A DG +
Sbjct: 195 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTIG-SFADLLRLVAA---IDGIDRI 250
Query: 272 RIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVD 330
R ++P +E +I EV R P + SFLH+PVQSGSD VL+ M R +T +++ ++
Sbjct: 251 RFTTSHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIR 307
Query: 331 TLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-K 389
L P +QI++D I GFPGET +DF QT+ LI + F + F RPGTPAA M
Sbjct: 308 KLRAARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVD 367
Query: 390 KVPSAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVL 446
VP K+R L +A M G +RI + + I L G T+ V
Sbjct: 368 DVPEEEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSIMELSGRTENNRVVN 427
Query: 447 VPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN 488
+M+G V+IT V S+ G+V++ +++ +IA +
Sbjct: 428 FEGNPDMVGKFVDVEITDVWTNSLRGKVVRTEDEMGLRIAES 469
>gi|258516358|ref|YP_003192580.1| MiaB family RNA modification protein [Desulfotomaculum acetoxidans
DSM 771]
gi|257780063|gb|ACV63957.1| RNA modification enzyme, MiaB family [Desulfotomaculum acetoxidans
DSM 771]
Length = 435
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 194/375 (51%), Gaps = 30/375 (8%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TL 110
++T+ + T GC NQ ++ + + GY+ D +E A +++INT + L
Sbjct: 3 SKTVAVATLGCKVNQYEAAAIVSLFRSKGYSEVDFTEPAGVYVINTCTVTHLSDRKSRQL 62
Query: 111 IAKCKSAKKPLVVA--GCVPQGSR-DLKELEGVS-IVGVQQIDRVVEVVEETLKGHEV-- 164
I + V+A GC Q S +L L V +VG D++V++VE + K ++
Sbjct: 63 IRRAVRTNPEAVIAVTGCYAQTSPGELMSLPEVDLVVGTSDRDKIVDLVEASSKAEKINA 122
Query: 165 -----RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
+ ++LPA + + L I GC C+YC +ARG L S E++
Sbjct: 123 VADIEKACFYEELPA----PAGQGRVRAYLKIQEGCRNFCSYCIIPYARGPLRSRQPEAV 178
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNP 278
+ +++A G KE+ L+ TGAYG D+ L AIV +L G + LR+ P
Sbjct: 179 LNEAESLLAAGFKEIVLTGIQTGAYGVDLPAKTS--LAAIVEKLLRISGLSRLRLSSIEP 236
Query: 279 PFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
+ E+ E++ H ++ LH+P+QSGSD VL M R YT + +++ L E +P
Sbjct: 237 N---DLSPELIELILHSKIFCPHLHIPLQSGSDRVLKLMRRRYTTEGYAKILNNLREKMP 293
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVV 396
+ + TDI+ GFPGET+EDF Q + IK+ F +H+ ++ PR GTPAA ++V + V
Sbjct: 294 NLAVTTDIMAGFPGETEEDFEQALGFIKDMAFSGMHVFKYSPRRGTPAAGFPQQVDARVK 353
Query: 397 KKRSRELTSVFEAFT 411
++RSR L ++ E T
Sbjct: 354 EQRSRRLIALGEQLT 368
>gi|295696236|ref|YP_003589474.1| MiaB family RNA modification protein [Kyrpidia tusciae DSM 2912]
gi|295411838|gb|ADG06330.1| RNA modification enzyme, MiaB family [Kyrpidia tusciae DSM 2912]
Length = 484
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 130/444 (29%), Positives = 215/444 (48%), Gaps = 29/444 (6%)
Query: 53 PKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMD 108
P + + +++T+GC N+ DSE MAG L GY EEAD+ L NT ++A D
Sbjct: 35 PAVGVGKRYWIRTYGCQMNEHDSEIMAGMLQEMGYRPASAPEEADLILFNTCAVRENAED 94
Query: 109 TL---IAKCKSAKKP-----LVVAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVV 155
+ I + K K+ L + GC+ Q + + + + G + ++ E+V
Sbjct: 95 KVFGEIGRIKPLKRRHPELLLGLCGCMAQEEKVRQFVRDTFPHVDLVFGTHNLHQLPELV 154
Query: 156 EETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGS 213
+ + E + R +LPK+R++ + I GC CTYC RG S
Sbjct: 155 VQAMASQETVFAVWDRPGQVVENLPKLRQDGVKAWVNIQYGCNKYCTYCIVPFTRGRERS 214
Query: 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLR 272
E +V V+ + +G++EV L ++ YG D+G V+ LL VA +P G +R
Sbjct: 215 RLPEDVVAEVKQLAEEGIREVTLLGQNVNDYGLDLGDVDFADLLQQ-VARIP--GIERVR 271
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
+NP + L ++ C + +H+PVQSG++ +L MNR YT + +V+ +
Sbjct: 272 FTTSNPWNFTDKLIDVIAAEEAICEH--IHLPVQSGNNRILKRMNRGYTRETYLQLVERI 329
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 392
+ +PG+ + TDII GFPGET+E+F T++L++ +F + R GT AARMK
Sbjct: 330 RDRIPGVSLTTDIIVGFPGETEEEFQDTLDLVRTVQFDNAFTFLYSRRQGTAAARMKDDT 389
Query: 393 SAVVKK-RSRELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVP 448
S KK R R L + A + + + G+ E + + E + L G T+ VL+
Sbjct: 390 SLEAKKDRLRRLNELQAAISRRYHEQLVGKTEDVLVEGESKTNPEILAGRTRTNRLVLLQ 449
Query: 449 STGNMLGTSALVKITSVGRWSVFG 472
+ ++G + V+I W + G
Sbjct: 450 GSRELIGRTIPVQIVGAQTWLLRG 473
>gi|418472250|ref|ZP_13042006.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
gi|371547146|gb|EHN75550.1| hypothetical protein SMCF_4988 [Streptomyces coelicoflavus ZG0656]
Length = 505
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/385 (31%), Positives = 190/385 (49%), Gaps = 33/385 (8%)
Query: 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGY--ALTDNSEEADIWLINTQSAMDT 109
S + GT T ++T+GC N DSE ++G L GY A +AD+ + NT + +
Sbjct: 7 SQSVGGTRTYEVRTYGCQMNVHDSERLSGLLEDAGYVRAPEGADGDADVVVFNTCAVREN 66
Query: 110 LIAKC---------KSAKKP---LVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEV 154
K K A +P + V GC+ Q RD +K V +V G I ++ +
Sbjct: 67 ADNKLYGNLGHLAPKKASRPGMQIAVGGCLAQKDRDTIVKRAPWVDVVFGTHNIGKLPVL 126
Query: 155 VEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 212
+E E ++ + L A LP R + + + I+VGC CT+C RG
Sbjct: 127 LERARVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSISVGCNNTCTFCIVPALRGKEK 186
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVN--LPILLNAIVAELPPDGSTM 270
++ V ++A+GV E+ L ++ AYG DIG LL A + +
Sbjct: 187 DRRPGDILAEVEALVAEGVSEITLLGQNVNAYGSDIGDREAFSKLLRAC-----GNIEGL 241
Query: 271 LRIGMTNP---PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRT 327
R+ T+P F + + +AE P LH+P+QSGSD VL AM R Y +
Sbjct: 242 ERVRFTSPHPRDFTDDVITAMAET---PNAMPQLHMPLQSGSDPVLKAMRRSYRQERYLG 298
Query: 328 VVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387
+++ + +P I TDII GFPGET+EDF QT+++++E +F Q Q+ RPGTPAA
Sbjct: 299 IIEKVRAAIPHAAITTDIIVGFPGETEEDFEQTLHVVREARFAQAFTFQYSKRPGTPAAE 358
Query: 388 MK-KVPSAVVKKRSRELTSVFEAFT 411
M+ ++P AVV++R L ++ E +
Sbjct: 359 MENQIPKAVVQERYERLVALQEEIS 383
>gi|126652507|ref|ZP_01724672.1| YmcB [Bacillus sp. B14905]
gi|126590635|gb|EAZ84751.1| YmcB [Bacillus sp. B14905]
Length = 514
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 128/447 (28%), Positives = 215/447 (48%), Gaps = 36/447 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDT---------- 109
T Y++T+GC N+ D+E MAG GY T+ EEAD+ L+NT + +
Sbjct: 69 TFYIRTYGCQMNEHDTEVMAGIFMQLGYTPTEIIEEADVVLLNTCAIRENAENKVFGELG 128
Query: 110 --LIAKCKSAKKPLVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
L K K+ + + V GC+ Q ++ L+ V +V G I R+ +++E
Sbjct: 129 FLLKYKRKNPEMLIGVCGCMSQEESVVNKILRSYPHVDMVFGTHNIHRLPNILKEAYMSK 188
Query: 163 E--VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
E V + ++ +LPK R + I GC CTYC + RG S E ++
Sbjct: 189 EMVVEVWSKEGDVIENLPKKRLGSIKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEEII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + A G +E+ L ++ AYG+D ++ L ++ L +R ++P
Sbjct: 249 AEVRELAAAGYQEIMLLGQNVNAYGKDFE-DIEYRLGDLMDALRKIDIPRIRFTTSHPRD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ L E+ + + + +H+PVQSGS+ +L M R+YT F T+V+ + +P +
Sbjct: 308 FDDQLIEV--LAKRGNLVEHIHLPVQSGSNDILKIMARKYTREHFLTLVEKIKAAIPEVT 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKR 399
+ TDII G+P ET+E F +T++L +E F + PR GTPAA+M VP V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYREVGFEAAFTYIYSPREGTPAAKMVDNVPEEVKKER 425
Query: 400 SRELTSVFEAFTPYLGMEGRVERI--WITEIAADGIH------LVGHTKGYVQVLVPSTG 451
+ L V ++ +ER+ + E+ +G L G+T+ V +
Sbjct: 426 LQRLNEVVGEYS-----RKALERLNGEVVEVLVEGTSKRRDDVLAGYTRKNRLVNFKAPA 480
Query: 452 NMLGTSALVKITSVGRWSVFGEVIKIL 478
++G VKI +S+ GE ++++
Sbjct: 481 EVIGQLVKVKIIETTSYSLTGEFLEVV 507
>gi|348590646|ref|YP_004875108.1| tRNA-i(6)A37 methylthiotransferase [Taylorella asinigenitalis MCE3]
gi|347974550|gb|AEP37085.1| tRNA-i(6)A37 methylthiotransferase [Taylorella asinigenitalis MCE3]
Length = 469
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 144/446 (32%), Positives = 218/446 (48%), Gaps = 40/446 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
+Y+KTFGC N+ DSE MA L+A G LTDN EEAD+ L+NT S + K S
Sbjct: 33 LYIKTFGCQMNEYDSEKMADVLNAEKGLELTDNPEEADVILLNTCSIREKAQEKVFSDLG 92
Query: 117 ---------AKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
+ V GCV +G+ L+ V IV G Q + R+ E++E+ K
Sbjct: 93 RINLLKKKKPDLLIGVGGCVASQEGATILQRAPYVDIVFGPQTLHRLPELIEQ--KESTG 150
Query: 165 RLLHRKKLPALD----LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
R P ++ LP R N + I GC C+YC + RG S +E ++
Sbjct: 151 RAQVDVSFPEIEKFDHLPPARVNGPTAYVSIMEGCSKYCSYCVVPYTRGEEISRPLEDVL 210
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
V + GVKE+ L ++ AY +G I A++ EL + + RI +
Sbjct: 211 VEVADLADQGVKEINLLGQNVNAYRGSVGEQGEIADFAMLLELIHEIPGVERIR-----Y 265
Query: 281 ILEHLKEIAEVL-----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
I H KE+ + L + P + FLH+PVQ+GSD VL+AM R YT ++++VV L ++
Sbjct: 266 ITSHPKEMTKRLIEAHGKLPKLVPFLHLPVQAGSDRVLAAMKRGYTSLEYKSVVRNLYKV 325
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 394
P + +++D I GFPGET+EDF T+ LIK+ + RPGTPAA + P
Sbjct: 326 RPDLTLSSDFIVGFPGETEEDFEATLKLIKDLNIDTSFSFIYSRRPGTPAADLPDDTPYE 385
Query: 395 VVKKRSRELTSVF----EAFTPYLGMEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVPS 449
V +R + L ++ AF+ M G +++ + + D L+G T+ V
Sbjct: 386 VKLERLQRLQALVNKQARAFSE--KMLGTNQKVLVEGFSKRDSEELMGRTENNRIVNFKG 443
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVI 475
+++G VKIT + S+ GE +
Sbjct: 444 PDSLVGQMVTVKITDIYTNSLRGEFV 469
>gi|295706204|ref|YP_003599279.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
319]
gi|294803863|gb|ADF40929.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Bacillus megaterium DSM
319]
Length = 509
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 219/439 (49%), Gaps = 26/439 (5%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA---- 112
Y++T+GC N+ D+E MAG GY TD+ E+A + L+NT ++A + +
Sbjct: 68 FYIRTYGCQMNEHDTEVMAGIFLGLGYEPTDSVEDAHVILLNTCAIRENAENKVFGELGH 127
Query: 113 -KCKSAKKPLV---VAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE 163
K ++P + V GC+ Q ++ L++ + V ++ G I R+ ++ E E
Sbjct: 128 LKALKRERPELLIGVCGCMSQEESVVNKILQKHQHVDMIFGTHNIHRLPHILNEAYLAKE 187
Query: 164 --VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
+ + ++ +LP+ R+ + I GC CTYC + RG S E ++
Sbjct: 188 MVIEVWSKEGDVIENLPRARKGSVKAWVNIMYGCDKFCTYCIVPYTRGKERSRRPEDIIQ 247
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
VR + A G KE+ L ++ AYG+D ++ L ++ E+ +R ++P
Sbjct: 248 EVRHLAAQGYKEITLLGQNVNAYGKDFE-DITYGLGDLMDEIRKIDVARIRFTTSHPRDF 306
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ L E+ + + + +H+PVQSGS +L M R+Y+ + +V + E +P +
Sbjct: 307 DDRLIEV--LAKGGNLVDHIHLPVQSGSSDILKIMARKYSREHYLELVRKIKEAIPTASL 364
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRS 400
TDII GFP ETDE F +T++L +E +F + + PR GTPAA+M+ VP V K+R
Sbjct: 365 TTDIIVGFPNETDEQFEETMSLYREVEFDSAYTFIYSPREGTPAAKMQDNVPMEVKKERL 424
Query: 401 RELTSVFEAFTP--YLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTS 457
+ L ++ + EG+V + + E + L G+T+ V + +++G
Sbjct: 425 QRLNALVNEISAKKLKEYEGKVVEVLVEGESKNNPEVLAGYTEKSKLVNFKAPKSVIGQL 484
Query: 458 ALVKITSVGRWSVFGEVIK 476
VK+T W++ GE+++
Sbjct: 485 VKVKVTKAKTWTLNGEMVE 503
>gi|291454555|ref|ZP_06593945.1| RNA modification enzyme [Streptomyces albus J1074]
gi|291357504|gb|EFE84406.1| RNA modification enzyme [Streptomyces albus J1074]
Length = 505
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 187/376 (49%), Gaps = 24/376 (6%)
Query: 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-DNSEE--ADIWLINT----QSAMDT 109
G +T ++T+GC N DSE +AG L GY + + +EE AD+ + NT ++A +
Sbjct: 40 GVKTYEVRTYGCQMNVHDSERLAGLLEGAGYVRSPEGTEEGDADVVVFNTCAVRENADNR 99
Query: 110 LIA--------KCKSAKKPLVVAGCVPQGSRDL--KELEGVSIV-GVQQIDRVVEVVEET 158
L K + + V GC+ Q RD K V +V G I ++ ++E
Sbjct: 100 LYGNLGRLAPMKTRRPGMQIAVGGCLAQKDRDTITKRAPWVDVVFGTHNIGKLPVLLERA 159
Query: 159 LKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
E ++ + L A LP R + + + ++VGC CT+C RG
Sbjct: 160 RVQEEAQVEIAESLEAFPSTLPTRRESAYAAWVSVSVGCNNTCTFCIVPALRGKEKDRRT 219
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
++ V ++A+GV E+ L ++ AYG DIG + + A +G +R
Sbjct: 220 GDILAEVEALVAEGVSEITLLGQNVNAYGSDIG-DRQAFSKLLRACGKIEGLERVRFTSP 278
Query: 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336
+P + + IA + P V LH+P+QSGSD VL AM R Y F ++++ + +
Sbjct: 279 HPRDFTDDV--IAAMAETPNVMPQLHMPLQSGSDTVLRAMRRSYRQERFLSIIEKVRAAI 336
Query: 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395
P I TDII GFPGET+EDF QT++ ++E +F Q Q+ RPGTPAA M ++P V
Sbjct: 337 PDAAITTDIIVGFPGETEEDFQQTLHTVREARFAQAFTFQYSKRPGTPAAEMDGQIPKEV 396
Query: 396 VKKRSRELTSVFEAFT 411
V++R L ++ E +
Sbjct: 397 VQERYMRLVALQEEIS 412
>gi|314933472|ref|ZP_07840837.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
gi|313653622|gb|EFS17379.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Staphylococcus caprae
C87]
Length = 514
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 219/444 (49%), Gaps = 34/444 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA 112
T +KT+GC N D+E MAG L A GY+ T + +AD+ LINT ++ + + I
Sbjct: 69 TFLIKTYGCQMNAHDTEVMAGILKALGYSATTDINQADVILINTCAIRENAENKVFSEIG 128
Query: 113 KCKSAKKP-----LVVAGCVPQG----SRDLKELEGVSIV-GVQQIDRVVEVVEETL--K 160
K KK + V GC+ Q ++ LK + V ++ G I + E++EE K
Sbjct: 129 NLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHHLPEILEEAYLSK 188
Query: 161 GHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
V + ++ +LPKVR + I GC CTYC RG S E ++
Sbjct: 189 AMVVEVWSKEGDVIENLPKVREGSIKAWVNIMYGCDKFCTYCIVPFTRGKERSRRPEDII 248
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR + +G +E+ L ++ +YG+DI +L L ++ ++ +R ++P
Sbjct: 249 NEVRELAREGYQEITLLGQNVNSYGKDIE-DLDYGLGDLLEDISKIDIPRVRFTTSHPWD 307
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+ + E+ + + +H+PVQSG++AVL M R+YT + +V+ + +P +
Sbjct: 308 FTDRMIEV--IANGGNIVPHIHLPVQSGNNAVLKIMGRKYTRESYLDLVNRIKTAIPNIA 365
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TDII G+P ET+E F +T++L E +F + + R GTPAA+MK VP+ V K+R
Sbjct: 366 LTTDIIVGYPNETEEQFEETLSLYDEVEFEHAYTYLYSQRDGTPAAKMKDNVPTEVKKER 425
Query: 400 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAA--DGIHLVGHTKGYVQVLVPSTGN 452
+ L +A + Y EG + + + E A+ D L G+T+ V +
Sbjct: 426 LQRLNKKVGEYSQKAMSQY---EGEIVTV-LCEGASKKDDTVLAGYTEKNKLVNFKAPKE 481
Query: 453 MLGTSALVKITSVGRWSVFGEVIK 476
M+G VKI ++S+ G ++
Sbjct: 482 MIGKLVDVKIDEAKQYSLNGTFVQ 505
>gi|239827771|ref|YP_002950395.1| MiaB family RNA modification protein [Geobacillus sp. WCH70]
gi|239808064|gb|ACS25129.1| RNA modification enzyme, MiaB family [Geobacillus sp. WCH70]
Length = 451
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 223/459 (48%), Gaps = 35/459 (7%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKK 119
T+ T GC N ++E + GY D AD+++INT + +T K + +
Sbjct: 3 TVAFHTLGCKVNHYETEAIWQLFKKAGYERKDFDSRADVYVINTCTVTNTGDKKSRQVIR 62
Query: 120 PLV---------VAGCVPQGS-RDLKELEGVSIV-GVQQIDRVVEVVEETLKGHE----- 163
+ V GC Q S ++ + GV IV G Q +++E +E + +
Sbjct: 63 RAIRRNPDAVVCVTGCYAQTSPAEVMAIPGVDIVIGTQDRGKILEYIERFQRERQPINGV 122
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
++ + +D+P+ ++ L I GC CT+C ARG + S + ++ +
Sbjct: 123 SNIMKTRVFEEMDVPEFT-DRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPKEVIRQA 181
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282
+ ++ G KE+ L+ TG YG D+ + LL + ++ G LRI I
Sbjct: 182 QQLVDAGYKEIVLTGIHTGGYGTDLKDYSFAALLRDLDEQVV--GLKRLRISSIEASQIT 239
Query: 283 EHLKEIAEVL-RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ EI EVL R + LH+P+QSGS+ VL M R+YT+ F + L E+ P + I
Sbjct: 240 D---EIIEVLQRSDKIVRHLHIPLQSGSNTVLKRMRRKYTVEFFAERLQRLREVFPELAI 296
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
+D+I GFPGET+E+F +T + I+E +F ++H+ + R GTPAARM +V V +R
Sbjct: 297 TSDVIVGFPGETEEEFMETYHFIREQRFSELHVFPYSKRTGTPAARMPNQVDEEVKNERV 356
Query: 401 RELTSVFEAFTPYLG--MEGRVERIWITEIAAD----GIHLVGHTKGYVQVLVPSTGNML 454
L ++ + EG+V + E + G++ +G+T Y++V P+T M+
Sbjct: 357 HRLIALSDQLAKEYASQFEGQVLEVIPEERDKENPESGLY-IGYTDNYLKVKFPATEEMV 415
Query: 455 GTSALVKITSVGRWSVFGEVIKILNQVDDKIASNRRISS 493
G VKIT G GE +++ V D I + ++SS
Sbjct: 416 GEIVKVKITKAGYPYNEGEFVRV---VTDDIPQSVKLSS 451
>gi|317491143|ref|ZP_07949579.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316920690|gb|EFV42013.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 474
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 227/456 (49%), Gaps = 35/456 (7%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTQSAMDTLIAKC-- 114
T+ +++KT+GC N+ DS MA L S G+ LTDN+EEAD+ L+NT S + K
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLGSTHGFELTDNAEEADVLLLNTCSIREKAQEKVFH 61
Query: 115 --------KSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
K A ++ V GCV +G + V IV G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEANPNVIIGVGGCVASQEGKLLRQRAHYVDIVFGPQTLHRLPEMINK-VRG 120
Query: 162 H-----EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215
+V +K L P+ + FV I+ GC CTYC + RG S
Sbjct: 121 SKSPVVDVSFPEIEKFDRLPEPRAEGPSAFVSIME---GCNKYCTYCVVPYTRGEEVSRP 177
Query: 216 VESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIG 274
+ ++ + + A GV+EV L ++ AY G ++ + DG +R
Sbjct: 178 ADDVLFEIAQLAAQGVREVNLLGQNVNAYRGPSFDGDICTFAELLRLVAAIDGIDRIRFT 237
Query: 275 MTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333
++P +E +I V P + SFLH+PVQSGSD +L+ M R +T+ ++++++ L
Sbjct: 238 TSHP---IEFTDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTVLEYKSIIRKLR 294
Query: 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVP 392
+ P + I++D I GFPGET EDF QT+ LI E F + F PRPGTPAA M VP
Sbjct: 295 KARPDILISSDFIIGFPGETQEDFEQTMKLIAEVNFDVSYSFVFSPRPGTPAADMADDVP 354
Query: 393 SAVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPS 449
K+R L +A + M G V+RI + I+ + + G T+ V
Sbjct: 355 EEEKKQRLYILQDRINQQAQSYSRKMVGTVQRILVEGISRKNVMEMSGRTENNRVVNFEG 414
Query: 450 TGNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKI 485
+ ++GT V+IT V S+ G +++ +Q++ ++
Sbjct: 415 SPELVGTFVDVEITEVRTNSLRGVLVRTEDQMELRV 450
>gi|401564532|ref|ZP_10805419.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
gi|400188742|gb|EJO22884.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC6]
Length = 437
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 210/433 (48%), Gaps = 29/433 (6%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTL------IAKCK 115
+GC N +D+E M GQL GY T+ + +ADI LINT ++A D + I K K
Sbjct: 10 YGCQMNIADAERMEGQLQGAGYMRTEETADADIILINTCCVRETAEDKVYGKIGEIKKIK 69
Query: 116 SAKKPLV--VAGCVPQGSRD--LKELEGVSIV----GVQQIDRVV-EVVEETLKGHEVRL 166
L+ +AGC+ Q D ++ + V VQ++ R++ E+ E +V L
Sbjct: 70 EKNPKLIFGIAGCMAQKEGDNLMRRAPHIDFVLGTGKVQELTRIIAEIAAEHTSVVDVAL 129
Query: 167 LHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV 226
+ A +LP R KF +PI GC CTYC + RG S + E +V V+
Sbjct: 130 SDSE--IAENLPVARGGKFSAWVPIMYGCNNYCTYCIVPYVRGRERSRSPEEVVAEVQRA 187
Query: 227 IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286
+A+G +EV L ++ +YG+D L +V E+ +G +R ++P I + L
Sbjct: 188 VAEGYREVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKDIGDKLI 245
Query: 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346
+ + H C + +H+PVQ GS +L AMNR YT+ +R + E +P + TD+I
Sbjct: 246 DTIKNGTHICEH--IHLPVQYGSSRILKAMNRGYTVERYRERALRVRESLPEASLTTDLI 303
Query: 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRSRELTS 405
GFPGETDEDF + ++ +++ ++ + + R GTPAA M ++VP V +R L
Sbjct: 304 VGFPGETDEDFAEMLSFLRDMRYDSAYTFLYSKRSGTPAATMAEQVPDDVKHERLNALME 363
Query: 406 VFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTKGYVQVLVPSTGNMLGTSALVKI 462
+ + + GR + + + D G T+ VL P G V++
Sbjct: 364 AQNTISREINEQLLGRTLEVMVEGASKNDPTVWSGRTRTNKIVLFPHGAEQEGDFVQVRV 423
Query: 463 TSVGRWSVFGEVI 475
T W + GE++
Sbjct: 424 TQPQTWVLKGEIV 436
>gi|134299740|ref|YP_001113236.1| (dimethylallyl)adenosine tRNA methylthiotransferase
[Desulfotomaculum reducens MI-1]
gi|229890514|sp|A4J5Q8.1|MIAB_DESRM RecName: Full=(Dimethylallyl)adenosine tRNA methylthiotransferase
MiaB; AltName: Full=tRNA-i(6)A37 methylthiotransferase
gi|134052440|gb|ABO50411.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Desulfotomaculum reducens
MI-1]
Length = 456
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/436 (28%), Positives = 209/436 (47%), Gaps = 27/436 (6%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTL----------IA 112
+++FGC N+ D+E +AG L GY T EEADI L+NT +T +
Sbjct: 21 IQSFGCQMNERDAESLAGMLEDLGYCPTSAQEEADIILLNTCCVRETAESKVFGLLGRLR 80
Query: 113 KCKSAKKPLV--VAGCVPQGSRDLKELEGVS-----IVGVQQIDRVVEVVEETLKGHE-- 163
K K AK L+ V GC+ Q K + I G I + ++ + + HE
Sbjct: 81 KLKVAKPDLILGVCGCMSQQEDAAKRIRRSFPFVDLIFGTHNIHELPRMIHQVQENHEAV 140
Query: 164 VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ + +K +P R++K + I GC CTYC + RG S E ++ +
Sbjct: 141 LEVWATEKGITESIPVKRKDKLKAWVTIMYGCNNFCTYCIVPYVRGRERSRQPEDIIDEI 200
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283
+ ++ +G KEV L ++ +YG+D N + ++A G +R ++P +
Sbjct: 201 KELVQEGYKEVTLLGQNVNSYGKDFKNNYR-FADLLMAIDDITGLERVRFMTSHPRDFDQ 259
Query: 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343
L E+ + C + H+P Q+GS+ VL MNR YT + ++ + E VP I
Sbjct: 260 RLIEVVASAKKVCEH--YHLPAQAGSNRVLKMMNRGYTREHYLELIRKIKERVPNASITA 317
Query: 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSREL 403
D++ GFPGET+EDF +T++L+K+ ++ + R GTPAA++++V V +R + L
Sbjct: 318 DLMVGFPGETEEDFQETLDLVKQVRYDSAFTFVYNIRSGTPAAKLEQVSEEVKSERIQRL 377
Query: 404 TSV--FEAFTPYLGMEGRVERIWIT-EIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALV 460
+ + EGRV + + E + L G T+ V+ +G++ G +
Sbjct: 378 IELQNLISLENNQREEGRVLEVLVEGETKTNPDLLAGRTRTNKLVVFQGSGHLPGQLVQI 437
Query: 461 KITSVGRWSVF-GEVI 475
+IT GR ++ GEV+
Sbjct: 438 RITK-GRPNLLEGEVV 452
>gi|260907232|ref|ZP_05915554.1| RNA modification enzyme, MiaB family protein [Brevibacterium linens
BL2]
Length = 498
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 133/420 (31%), Positives = 206/420 (49%), Gaps = 38/420 (9%)
Query: 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIA------ 112
+KT+GC N DSE ++G L GY D ++AD+ + NT ++A + L
Sbjct: 20 VKTYGCQMNVHDSERLSGLLDDAGYVPADTDDQADVIVFNTCAVRENADNRLYGNLGQLA 79
Query: 113 --KCKSAKKPLVVAGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEETLKGHE--VR 165
K ++ + V GC+ Q RD +K+ V +V G + + ++E E V
Sbjct: 80 HVKERNPDFQIAVGGCMAQKDRDTIVKKAPWVDVVFGTHNMGSLPALLERARHNQEAQVE 139
Query: 166 LLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT 225
+L + LP R ++ + I+VGC +CT+C RG ++ V
Sbjct: 140 ILESLDVFPSTLPSRRESQHSGWVSISVGCNNSCTFCIVPSLRGKEKDRRPGDILAEVEA 199
Query: 226 VIADGVKEVWLSSEDTGAYG---RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPP-FI 281
++ADGV EV L ++ +YG RD G LL A+ +G +R +P F
Sbjct: 200 LVADGVVEVTLLGQNVNSYGSEFRDKGA-FAKLLRAVGKV---EGIERVRFTSPHPASFS 255
Query: 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341
+ + +AE P V LH+P+QSGSD++L +M R Y S F ++D++ E +P I
Sbjct: 256 DDVIDAMAET---PAVMPQLHMPLQSGSDSILKSMRRSYRTSRFMRILDSVREKIPNAAI 312
Query: 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVKKRS 400
TDII GFPGET+EDF T+++++ +F Q Q+ RPGTPAA M +VP +V++R
Sbjct: 313 TTDIIVGFPGETEEDFLGTMDIVRRARFSQAFTFQYSIRPGTPAATMDDQVPKHIVQERF 372
Query: 401 RELTSV-----FEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKG--YVQVLVPSTGNM 453
LT++ +E T +G E VE + T D L G + V V +P M
Sbjct: 373 ERLTALQDEISWEENTAQIGRE--VEVLVTTRPHDDSPRLTGRSADNRLVHVGIPDGEQM 430
>gi|260914514|ref|ZP_05920983.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
43325]
gi|260631615|gb|EEX49797.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Pasteurella dagmatis ATCC
43325]
Length = 474
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 221/457 (48%), Gaps = 45/457 (9%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTQSAMDTLIAKC-- 114
T+ +++KT+GC N+ DS MA L S G LTD EEAD+ L+NT S + K
Sbjct: 2 TQKLHIKTWGCQMNEYDSSKMADLLNSTHGLELTDIPEEADVLLLNTCSIREKAQEKVFH 61
Query: 115 --------KSAKKPLV--VAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
K K LV V GCV +G V I+ G Q + R+ E++ + G
Sbjct: 62 QLGRWKELKKHKPGLVIGVGGCVASQEGEHIRTRAPYVDIIFGPQTLHRLPEMINQIRGG 121
Query: 162 H----EVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
+V +K L P+ FV I+ GC C++C + RG S V
Sbjct: 122 KSSVVDVSFPEIEKFDRLPEPRAEGPTAFVSIME---GCNKYCSFCVVPYTRGEEVSRPV 178
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRI 273
+ ++ + + GV+EV L ++ AY D G+ L +VA + DG LR
Sbjct: 179 DDVLFEIAQLAEQGVREVNLLGQNVNAYRGATHDDGICTFAELLRLVAAI--DGIDRLRF 236
Query: 274 GMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
++P +E +I +V R P + SFLH+PVQSGSD VLS M R +T ++++++ L
Sbjct: 237 TTSHP---IEFTDDIIDVYRDTPELVSFLHLPVQSGSDRVLSMMKRNHTALEYKSIIRKL 293
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM---- 388
+ P +QI++D I GFPGET EDF QT+NLI + F + RPGTPAA M
Sbjct: 294 RAVRPEIQISSDFIVGFPGETAEDFEQTMNLIAQVNFDMSFSFIYSARPGTPAADMPDDV 353
Query: 389 ----KKVPSAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQ 444
KK V+++R + F LG E RV + D + L G T+
Sbjct: 354 SEDEKKQRLYVLQQRINNQAAQFS--RAMLGTEQRV--LVEGPSKKDLMELTGRTETNRI 409
Query: 445 VLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 481
V T +M+G +KIT V S+ G+V++ +Q+
Sbjct: 410 VNFVGTPDMIGKFVDIKITDVFTNSLRGDVVRTEDQM 446
>gi|255659203|ref|ZP_05404612.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
20544]
gi|260848655|gb|EEX68662.1| tRNA-I(6)A37 modification enzyme MiaB [Mitsuokella multacida DSM
20544]
Length = 430
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 207/411 (50%), Gaps = 39/411 (9%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
+ + T GC NQ ++E M G GY + AD+++INT S +I +
Sbjct: 3 VALTTLGCKVNQFETETMEGLFKQRGYEVVPFEARADVYVINTCSVTSLGDRKSRQIIRR 62
Query: 114 CKSAKKPLVVA--GCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLK-----GHEV 164
+VA GC Q + D +K +EGV +V G ++ +V+ VE+ ++ G
Sbjct: 63 AHRENPQAIVAVCGCYAQVAPDEIKAIEGVRVVLGTKERAHIVDYVEKAMQEDGIQGTIT 122
Query: 165 RLLHRK---KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
++ K +P D P+ R L I GC C+YC +ARG + S E +
Sbjct: 123 DIMKAKTFEDIPLYDSPERTRA----FLKIEDGCQNFCSYCIIPYARGPVKSRLPEHVHR 178
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281
++A G KE+ L+ GAYGRD+ ++ L +A L G LR+G
Sbjct: 179 EAEKLVAMGFKEIVLTGIHLGAYGRDLPGDI-TLADACREVLSVPGLKRLRLGSLES--- 234
Query: 282 LEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
+E E+ ++R + + LH+P+Q+GSD VL MNR Y +F +++ + E VPG+
Sbjct: 235 IELSPELFALIREDERFCAHLHLPLQAGSDKVLKDMNRHYDTQEFARLIEHIEEEVPGVA 294
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP-AARMKKVPSAVVKKR 399
I+TDII GFPGET+EDF Q ++ +++ F ++H+ + R GTP AAR +V AV K+R
Sbjct: 295 ISTDIIVGFPGETEEDFEQGLSFVEKMNFARMHVFPYSRRTGTPAAARKDQVDEAVKKER 354
Query: 400 SRELTSVF-----EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQV 445
+ ++ E ++G E RV + E A DGI G T Y++V
Sbjct: 355 VHRMQALADRKAEEFHRSFIGREMRV----LFETAKDGI-TDGLTDNYIRV 400
>gi|325295239|ref|YP_004281753.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065687|gb|ADY73694.1| (Dimethylallyl)adenosine tRNA methylthiotransferase miaB
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 437
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 220/442 (49%), Gaps = 38/442 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD-------TLIAK 113
Y+KTFGC N +DSE MAG L + GY TD EEAD+ ++NT S + I
Sbjct: 4 FYIKTFGCQMNVNDSEKMAGILRSLGYEKTDLPEEADLIIVNTCSVRAKPDNKAYSFIGN 63
Query: 114 CKSAKKP-----LVVAGCVPQGSRD-LKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRL 166
K KK + V GCVPQ ++ + + V +V G ++ E+++ K V +
Sbjct: 64 LKKIKKEKPETIIAVGGCVPQKEKESILRFKHVDLVFGTFNFMKIGELIKRAKKERVVEI 123
Query: 167 LHRK-----KLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVG 221
L+ K K+P +D N +V + + GC C+YC RG S E ++
Sbjct: 124 LNSKIPEEDKVPLID--SYLENPYVAYVTVQRGCNRFCSYCIVPFTRGRERSVKPELVLK 181
Query: 222 RVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP--- 278
V+ + GVKEV L ++ Y + G++L LL +V+E+ +G +R ++P
Sbjct: 182 EVKRLAERGVKEVHLLGQNVDFYNYE-GIDLADLL-YMVSEV--EGIERIRFTTSHPCGF 237
Query: 279 -PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337
I+E +K I +V C Y +H+P QSGS +L MNR YT ++ V L E +P
Sbjct: 238 NRKIVEAMKNIEKV----CPY--VHLPPQSGSTKILERMNRGYTREEYTEKVMMLKEEIP 291
Query: 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396
+ ++ D I GFPGET +DF +T++L++ F Q + ++ PRP T A+ K VP
Sbjct: 292 KVALSGDFIVGFPGETTKDFEETLSLVETCVFDQGFVFEYSPRPFTKASNFKDDVPKEEK 351
Query: 397 KKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML 454
+R +EL ++ +A G +E + + + G L G TK V+ + ++
Sbjct: 352 NRRLQELQNLLRVQAEEKNKKRLGCIEEVLVEGKSPKGKELSGRTKDNKLVVFDGSEELV 411
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G ++IT + + G++++
Sbjct: 412 GKFVEIEITETSPFFLKGKLLQ 433
>gi|383753868|ref|YP_005432771.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365920|dbj|BAL82748.1| putative tRNA-thiotransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 446
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 137/444 (30%), Positives = 215/444 (48%), Gaps = 30/444 (6%)
Query: 55 IPGTETIYMK--TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMD 108
I G Y+K +GC N +D+E MAGQL+A GY T++++ AD+ +INT ++A D
Sbjct: 4 IDGKAHRYVKFLVYGCQMNVADAERMAGQLAAIGYERTEDTDIADLLIINTCAVRETAED 63
Query: 109 TLIAKCKSAKK-----PLVV---AGCVPQGSRD--LKELEGVSIV-GVQQIDRVVEVVEE 157
+ K KK P ++ GC+ Q D +K + V G Q+ + +VV+E
Sbjct: 64 KVYGKIGEIKKLKRENPQLIFGITGCMAQKESDKLIKRAPHIDFVLGTGQVHELTKVVQE 123
Query: 158 TL--KGHEVRL-LHRKKLPALD--LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLG 212
+GH V L K PA+ P R +PI GC CTYC + RG
Sbjct: 124 IQQERGHVVNTALDAKVAPAIAEGSPIAREGSLSAWVPIMYGCNNFCTYCIVPYVRGRER 183
Query: 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 272
S E +V V +A G KEV L ++ +YG+D + L +V ++ +G +R
Sbjct: 184 SRRPEDVVKEVEQAVAQGYKEVTLLGQNVNSYGKDHKLATFAELLKMVDKV--EGIKRVR 241
Query: 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332
++P + + + + H C +H+PVQ GS+ +L AMNR YT+ +R +V +
Sbjct: 242 FMTSHPKDLSDEVIDAIAEGEHLC--EHIHLPVQYGSNHLLKAMNRVYTVESYRELVKKI 299
Query: 333 IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KV 391
+P + TD+I GFPGET++DF Q ++ +KE ++ + + R GTPAA M+ +V
Sbjct: 300 RAKLPHASLTTDLIVGFPGETEDDFAQMLDFLKEIRYDSAYTFIYSKRSGTPAAEMENQV 359
Query: 392 PSAVVKKRSRELTSVFEAFTPYLG--MEGRVERIWITEIAA-DGIHLVGHTKGYVQVLVP 448
AV K+R L +V + + ++ +V + + + D GHT VL
Sbjct: 360 DDAVKKERLNALMAVQNQISLEINQSLQDKVMEVMVEGPSKNDDSVWTGHTCTNKIVLFN 419
Query: 449 STGNMLGTSALVKITSVGRWSVFG 472
G VKIT W + G
Sbjct: 420 HQDEQPGDFIQVKITHPQTWVLKG 443
>gi|194476570|ref|YP_002048749.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
gi|171191577|gb|ACB42539.1| hypothetical protein PCC_0084 [Paulinella chromatophora]
Length = 470
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 212/449 (47%), Gaps = 38/449 (8%)
Query: 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKS--- 116
T ++ TFGC N++DSE MAG L + GY + + EAD+ L NT + D+ K S
Sbjct: 27 TYWITTFGCQMNKADSERMAGILESIGYQIAPSEHEADLVLYNTCTIRDSAEQKVYSYLG 86
Query: 117 --AKKP-------LVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEV 164
A++ L+VAGCV Q G+ L+ + + +V G QQ +R+ ++ + G +V
Sbjct: 87 RQAQRKRTNPHIILIVAGCVAQQEGASLLRRVPEIDLVMGPQQTNRLSYLLSQVENGQQV 146
Query: 165 RLLHRKKLPALDLPKVRRNKFV-EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRV 223
+ + D+ RR V + + GC CTYC RG S ES+ +
Sbjct: 147 -IATEESYILEDITNARRESSVCGWVNVVYGCNERCTYCVVPSVRGKEQSRLPESIKMEM 205
Query: 224 RTVIADGVKEVWLSSEDTGAYGRDI-GV-------NLPILLNAIVAELPPDGSTMLRIGM 275
+ G +EV L ++ AYGRD+ G+ N L V E+ G +R
Sbjct: 206 EILATQGFREVTLLGQNVDAYGRDLAGISPEGRRHNTLTALLYFVHEV--KGINRIRFAT 263
Query: 276 TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
++P + E L E L C + H+P QSG D VL M R Y + + +VD +
Sbjct: 264 SHPRYFTERLIEACSNLSKVCEH--FHIPCQSGDDEVLKTMARGYNVDRYYRIVDRIRSR 321
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 394
+P I+ DII FPGETD + +T+ L+++ F QV+ + + PRP TPA+ +V
Sbjct: 322 MPDASISADIIVAFPGETDTQYQRTLELVEKVGFDQVNTAAYSPRPNTPASNWSIQVDER 381
Query: 395 VVKKRSRELTSVFE--AFTPYLGMEGRVERIWITEI-AADGIHLVGHTKGYVQVLVPSTG 451
+ +R ++L S+ E AF R+E I I + D +G T+ P+
Sbjct: 382 IKVERLQQLNSLVEKKAFERSKRYLNRIEEILIEGLNPKDSNQFMGRTRSNRLTFFPTHT 441
Query: 452 N-----MLGTSALVKITSVGRWSVFGEVI 475
+ G +VKI + +S+ G ++
Sbjct: 442 SKGKSYTYGDLVMVKIKEIRAFSLTGTLL 470
>gi|297544628|ref|YP_003676930.1| MiaB family RNA modification protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842403|gb|ADH60919.1| RNA modification enzyme, MiaB family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 471
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 129/458 (28%), Positives = 220/458 (48%), Gaps = 37/458 (8%)
Query: 50 SLSPKIPGTETIY-MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMD 108
++ K G + Y ++T+GC N DSE +AG L GY T+N E+AD+ L NT + +
Sbjct: 21 EIAEKNKGKDLYYHIETYGCQMNVHDSEKLAGMLEKMGYKYTENLEQADVLLFNTCAVRE 80
Query: 109 ----------TLIAKCKSAKKPLV--VAGCVPQGSRDLKELEG----VSIV-GVQQIDRV 151
+ + + K+ L+ V+GC+ Q ++ ++ + IV G I +
Sbjct: 81 HAEIRVLGRVSQMKELKARNPNLIIGVSGCMMQEKNVVEAIKEKYSYIDIVFGTHNIYKF 140
Query: 152 VEVVEETLKGHEV--RLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARG 209
+++ E L ++ ++ K +LP R + + I GC CTYC + RG
Sbjct: 141 PQLLWEALNSQDIVIDVIEDTKNVIEELPVKRDSNLKAWVNIIYGCNNFCTYCIVPYTRG 200
Query: 210 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPIL-----LNAIVAELP 264
S E +V V+ + G KE+ L ++ +YG+D+ N+ LN I
Sbjct: 201 REKSRKPEDIVAEVKELAQKGYKEITLLGQNVNSYGKDLDENITFAKLLYKLNEI----- 255
Query: 265 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSD 324
+G +R ++P I + L L C LH+PVQ+GS+ +L MNR+YT
Sbjct: 256 -EGIERIRFMTSHPKDISDELIYAMRDLNKVC--EHLHLPVQAGSNKILKKMNRKYTKEH 312
Query: 325 FRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384
+ ++D + +P + I TDII GFPGET+EDF +T++L++ +F + + R GT
Sbjct: 313 YLEIIDKVRSNIPDIAITTDIIVGFPGETEEDFLETLDLVQRVRFDAAYTFIYSKRAGTV 372
Query: 385 AARM-KKVPSAVVKKRSRELTSVFEAFTPYLGME--GRVERIWITEIAA-DGIHLVGHTK 440
AA M +V AV +R L + + E G++ + I I+ D L T+
Sbjct: 373 AANMPDQVDDAVKHERLERLIELQNKISLEKSAELRGKIVEVLIEGISKRDSNKLTSRTR 432
Query: 441 GYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 478
V +++G A +KIT W++ GE+++++
Sbjct: 433 TNKVVHFVGDESLIGKLANIKITETKAWTMQGELVEVI 470
>gi|294637486|ref|ZP_06715772.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
23685]
gi|451966050|ref|ZP_21919305.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Edwardsiella tarda NBRC 105688]
gi|291089318|gb|EFE21879.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Edwardsiella tarda ATCC
23685]
gi|451315299|dbj|GAC64667.1| (dimethylallyl)adenosine tRNA methylthiotransferase MiaB
[Edwardsiella tarda NBRC 105688]
Length = 474
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 145/445 (32%), Positives = 216/445 (48%), Gaps = 31/445 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQL-SAFGYALTDNSEEADIWLINTQSAMDTLIAKC-- 114
T+ +++KT+GC N+ DS MA L S G LTDN+E+AD+ L+NT S + K
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLGSTHGLELTDNAEDADVLLLNTCSIREKAQEKVFH 61
Query: 115 --------KSAKKPLV--VAGCVP-QGSRDLKELEGVS--IVGVQQIDRVVEVVEETLKG 161
K AK L+ V GCV Q ++E I G Q + R+ E++E
Sbjct: 62 QLGRWKMLKEAKPDLIIGVGGCVASQEGEHIRERASFVDIIFGPQTLHRLPEMIERARGS 121
Query: 162 HE-VRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESL 219
H V + ++ D LP+ R + I GC CTYC + RG S + +
Sbjct: 122 HSPVVDVSFPEIEKFDRLPEPRAEGATAFVSIMEGCNKYCTYCVVPYTRGAEVSRPCDDV 181
Query: 220 VGRVRTVIADGVKEVWLSSEDTGAY---GRDIGVNLPILLNAIVAELPPDGSTMLRIGMT 276
+ + + A GV+EV L ++ AY D G+ L +VA + DG +R +
Sbjct: 182 LFEIAQLAAQGVREVNLLGQNVNAYRGATFDGGICTFAELLRLVAAI--DGIDRIRFTTS 239
Query: 277 NPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335
+P +E +I V P + SFLH+PVQSGSD +L+ M R +T +++ ++ L +
Sbjct: 240 HP---IEFSDDIIAVYEDTPELVSFLHLPVQSGSDRILNLMKRTHTALEYKAIIRKLRKA 296
Query: 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSA 394
P +QI++D I GFPGET +DF QT+ LI + F + F RPGTPAA M VP
Sbjct: 297 RPDIQISSDFIVGFPGETQQDFEQTMQLIADVDFDMSYSFIFSARPGTPAADMVDDVPEE 356
Query: 395 VVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPSTG 451
K+R L +A M+G V+RI + + + L G T+ V
Sbjct: 357 EKKQRLYILQERISQQAMRYSRRMQGTVQRILVEGTSRKNVMELSGRTENNRVVNFAGQP 416
Query: 452 NMLGTSALVKITSVGRWSVFGEVIK 476
M+G V+IT V S+ G V++
Sbjct: 417 EMIGRFVDVEITEVLPNSLRGVVVR 441
>gi|402302017|ref|ZP_10821137.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC9]
gi|400381004|gb|EJP33808.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Selenomonas sp. FOBRC9]
Length = 436
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 208/446 (46%), Gaps = 58/446 (13%)
Query: 66 FGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKCKSAKK-- 119
+GC N +D+E M GQL + GY T+ + +AD+ LINT +SA D + K KK
Sbjct: 11 YGCQMNIADAERMEGQLQSVGYTRTEETADADVILINTCCVRESAEDKVYGKIGEIKKLK 70
Query: 120 ---PLVV---AGCVPQGSRD--LKELEGVSIV----GVQQIDRVVEVVEETLKGHEVRLL 167
P ++ AGC+ Q D ++ + V VQ++ R++ E+R
Sbjct: 71 ERNPYLIFGIAGCMAQKEGDNLMQRAPHIDFVLGTGKVQELTRIIA---------EIRAE 121
Query: 168 HRKKLP-------ALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLV 220
H + A +LP R KF +PI GC CT+C + RG S T E +V
Sbjct: 122 HSPVVDTVIGNTIAENLPIARGGKFSAWVPIMYGCNNFCTFCIVPYVRGRERSRTPEDVV 181
Query: 221 GRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280
VR +A+G EV L ++ +YG+D L +V E+ +G +R ++P
Sbjct: 182 AEVRRAVAEGYTEVTLLGQNVNSYGKDHKAADFADLLRMVDEV--EGIRRVRFMTSHPKD 239
Query: 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340
I + L + RH C + +H+PVQ GS+ +L AMNR YT+ +R V + E +P
Sbjct: 240 ISDKLIDTIRNGRHLCEH--IHLPVQYGSNRILKAMNRVYTVESYRERVRRVREALPEAS 297
Query: 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKR 399
+ TD+I GFPGET+EDF T++ ++E ++ + + R GTPAARM+ +VP V R
Sbjct: 298 LTTDLIVGFPGETEEDFAATLDFLREIRYDSAYTFLYSKRSGTPAARMEDQVPDDVKHAR 357
Query: 400 -----------SRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 448
SR++ + +EG E D G T+ VL P
Sbjct: 358 LNLLMEEQNKISRDINEKLAGTELEVMVEG--------ESKNDPAVWSGRTRTNKIVLFP 409
Query: 449 STGNMLGTSALVKITSVGRWSVFGEV 474
G V+I W + GE+
Sbjct: 410 HGTEQAGDFVHVRIDRAQTWVLKGEI 435
>gi|420367650|ref|ZP_14868429.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
1235-66]
gi|391323041|gb|EIQ79710.1| tRNA-i(6)A37 thiotransferase enzyme MiaB [Shigella flexneri
1235-66]
Length = 476
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 224/458 (48%), Gaps = 31/458 (6%)
Query: 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYALTDNSEEADIWLINTQSAMDTL------ 110
T+ +++KT+GC N+ DS MA L A GY LTD +EEAD+ L+NT S +
Sbjct: 2 TKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVLLLNTCSIREKAQEKVFH 61
Query: 111 ------IAKCKSAKKPLVVAGCVP--QGSRDLKELEGVSIV-GVQQIDRVVEVVEETLKG 161
+ K K+ K + V GCV +G + V I+ G Q + R+ E++ + ++G
Sbjct: 62 QLGRWKLLKEKNPKLIIGVGGCVASQEGDHIRQRAHYVDIIFGPQTLHRLPEMINK-VRG 120
Query: 162 HEVRL----LHRKKLPALD-LPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTV 216
R + ++ D LP+ R + I GC CTYC + RG S
Sbjct: 121 STTRSPVVDISFPEIEKFDRLPEPRAEGPSAFVSIMEGCNKYCTYCVVPYTRGEEVSRPA 180
Query: 217 ESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGSTMLRIGM 275
+ ++ + + A GV+EV L ++ A+ G + + + DG +R
Sbjct: 181 DDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSFADLLRLVAAIDGIDRIRFTT 240
Query: 276 TNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334
++P +E +I EV R P + SFLH+PVQSGSD VL+ M R +T +++ ++ L
Sbjct: 241 SHP---IEFTDDIVEVYRDTPELVSFLHLPVQSGSDRVLNLMGRTHTALEYKAIIRKLRA 297
Query: 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPS 393
P +QI++D I GFPGET +DF QT+ LI + F + F RPGTPAA M VP
Sbjct: 298 ARPDIQISSDFIVGFPGETTQDFEQTMKLIADVNFDMSYSFIFSARPGTPAADMVDDVPE 357
Query: 394 AVVKKRSRELTSVF--EAFTPYLGMEGRVERIWITEIAADGI-HLVGHTKGYVQVLVPST 450
K+R L +A M G +RI + + + L G T+ V T
Sbjct: 358 EEKKQRLYILQERINQQAMAWSRRMVGTTQRILVEGTSRKSVMELSGRTENNRVVNFEGT 417
Query: 451 GNMLGTSALVKITSVGRWSVFGEVIKILNQVDDKIASN 488
+M+G V+IT V S+ G+V++ +++ +IA +
Sbjct: 418 PDMVGKFVDVEITDVWTNSLRGKVVRTEDEMGLRIAES 455
>gi|221194392|ref|ZP_03567449.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
gi|221185296|gb|EEE17686.1| tRNA-I(6)A37 thiotransferase enzyme MiaB [Atopobium rimae ATCC
49626]
Length = 455
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/377 (32%), Positives = 187/377 (49%), Gaps = 30/377 (7%)
Query: 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----QSAMDTLIAKC 114
+T ++KTFGC N DSE + G L G +++++ADI + T ++A L +
Sbjct: 10 KTYHIKTFGCQMNLHDSERVRGLLDVCGCNEVESTDDADIVIFMTCSVRENADQRLYGQA 69
Query: 115 K---------SAKKPLVVAGCVPQ--GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGH 162
S K+ + + GC+ Q G K++ V +V G + V ++
Sbjct: 70 SAMVSAPTPPSGKRVVAIGGCIAQRDGEALKKKVPAVDVVFGTSALASVPSLLSAAFADD 129
Query: 163 E----VRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVES 218
+ V K + DLP R F +PI GC CTYC + RG S T E+
Sbjct: 130 DDSVKVDTSEEHKGFSTDLPSHRDQVFHAWVPIMTGCNNFCTYCIVPYVRGRERSRTFEA 189
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+VG ++ADGV+E+ L ++ +YGRD+ P + A + G LR +NP
Sbjct: 190 VVGECERLVADGVREITLLGQNVNSYGRDL-YGTPRFAELLRA-VGKTGIERLRFTSSNP 247
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ + + IA + P V LH+ VQSGS +L MNR YT ++ +V L +P
Sbjct: 248 KDLTD--ETIAAMKETPAVMPHLHLAVQSGSTRILKKMNRSYTREEYLDLVHRLKAAMPD 305
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS-AVVK 397
+ +TDII GFPGET+EDF QT++L+KE + + + RPGTPAA+ + S V++
Sbjct: 306 IAFSTDIIVGFPGETEEDFEQTLSLVKEAAYSSAYTFIYSKRPGTPAAKFEDNTSHEVIQ 365
Query: 398 KRSRELTSV-----FEA 409
+R LT + FEA
Sbjct: 366 ERFNRLTDLVAKQAFEA 382
>gi|312135098|ref|YP_004002436.1| RNA modification enzyme, miab family [Caldicellulosiruptor
owensensis OL]
gi|311775149|gb|ADQ04636.1| RNA modification enzyme, MiaB family [Caldicellulosiruptor
owensensis OL]
Length = 434
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 225/442 (50%), Gaps = 36/442 (8%)
Query: 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKP 120
I T GC NQ +++ +A G+ + D +AD+++INT + + K + A K
Sbjct: 3 IAFYTLGCKVNQYETQAVAELFKESGFEIVDFDSKADVYVINTCTVTNMSDRKSRQAIKK 62
Query: 121 ---------LVVAGCVPQ-GSRDLKELEGVSIV-GVQQIDRVVEVVEETLKGHEVRLLHR 169
+VV GC PQ +++++ + I+ G + ++V+ V+E L+ ++
Sbjct: 63 AKKLSPESIVVVMGCYPQVYPHEVEKIRDIDIIIGTKDRQKIVDYVKEYLE-------NK 115
Query: 170 KKLPALD-------LPKVRRNKFVE----ILPINVGCLGACTYCKTKHARGHLGSYTVES 218
KK+ A+D +++ ++F E + I GC C+YC +ARG + S ++ES
Sbjct: 116 KKIVAIDEGYKRGTFEELKISEFNERSRAFIKIEEGCDQFCSYCIIPYARGAVRSRSLES 175
Query: 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278
+ VR ++++G KE ++ + AYG+D+ + L++ I +G +R+ P
Sbjct: 176 IEEEVRRLVSNGYKEFVITGINISAYGKDLDGKIT-LIDVIERINEIEGVKRIRLSSLEP 234
Query: 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338
+ E I+ +L + LH+ +QSGSD +L MNR YT + ++ +VD + E
Sbjct: 235 LIMSEQF--ISRLLSFDKLCHHLHLSLQSGSDKILKFMNRHYTTAQYQDIVDRIKEKWDD 292
Query: 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM-KKVPSAVVK 397
+ TDII GFPGET+EDFN T+ +++ F ++H+ +F P+ GT A M +V S +
Sbjct: 293 VAFTTDIIVGFPGETEEDFNATLEFVQKIGFSRIHVFRFSPKKGTKAYDMPNQVDSKEKE 352
Query: 398 KRSRELTSVFE--AFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNML- 454
+RS+ + V ++ + G+ + I + + + G++ Y++ +V ++
Sbjct: 353 RRSKVMKEVAANLSYQFHRKFVGKWLEVLIEQDSDFDGYYEGYSGNYIRTVVRKNHFIVP 412
Query: 455 GTSALVKITSVGRWSVFGEVIK 476
G VKIT V GE+I+
Sbjct: 413 GEIYKVKITQAYEQYVKGEIIQ 434
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,182,166,875
Number of Sequences: 23463169
Number of extensions: 439197626
Number of successful extensions: 1133935
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8142
Number of HSP's successfully gapped in prelim test: 711
Number of HSP's that attempted gapping in prelim test: 1105925
Number of HSP's gapped (non-prelim): 9686
length of query: 622
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 473
effective length of database: 8,863,183,186
effective search space: 4192285646978
effective search space used: 4192285646978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)