Query 007001
Match_columns 622
No_of_seqs 510 out of 2528
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 17:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4355 Predicted Fe-S oxidore 100.0 3E-95 7E-100 745.1 42.4 475 1-483 1-483 (547)
2 COG0621 MiaB 2-methylthioadeni 100.0 1.5E-88 3.2E-93 732.2 46.5 412 58-475 2-436 (437)
3 PRK14340 (dimethylallyl)adenos 100.0 1.5E-77 3.3E-82 658.7 50.1 417 56-477 4-442 (445)
4 PRK14327 (dimethylallyl)adenos 100.0 3.6E-77 7.9E-82 661.7 51.1 415 55-476 63-504 (509)
5 PRK14332 (dimethylallyl)adenos 100.0 1.1E-76 2.3E-81 652.3 50.4 412 58-475 10-448 (449)
6 PRK14330 (dimethylallyl)adenos 100.0 1E-75 2.2E-80 643.6 51.3 412 60-478 2-433 (434)
7 PRK14329 (dimethylallyl)adenos 100.0 1.4E-75 3.1E-80 646.9 51.2 418 54-476 19-466 (467)
8 PRK14335 (dimethylallyl)adenos 100.0 2.2E-75 4.8E-80 643.7 50.5 416 60-477 2-453 (455)
9 PRK14331 (dimethylallyl)adenos 100.0 1.9E-74 4.2E-79 633.9 50.0 412 60-477 2-436 (437)
10 PRK14333 (dimethylallyl)adenos 100.0 2.2E-74 4.7E-79 635.2 50.3 411 58-475 6-447 (448)
11 PRK14326 (dimethylallyl)adenos 100.0 4.7E-74 1E-78 638.9 50.3 418 52-475 7-455 (502)
12 PRK14336 (dimethylallyl)adenos 100.0 6.9E-74 1.5E-78 625.7 49.6 396 58-479 1-417 (418)
13 PRK14337 (dimethylallyl)adenos 100.0 9E-74 1.9E-78 629.7 50.5 411 59-475 4-445 (446)
14 TIGR01578 MiaB-like-B MiaB-lik 100.0 9.4E-74 2E-78 625.4 49.2 409 60-475 1-420 (420)
15 PRK14325 (dimethylallyl)adenos 100.0 1.4E-73 3.1E-78 628.4 50.8 417 58-479 3-443 (444)
16 PRK14328 (dimethylallyl)adenos 100.0 5.4E-73 1.2E-77 622.8 49.7 413 59-476 2-439 (439)
17 TIGR01574 miaB-methiolase tRNA 100.0 9.2E-73 2E-77 620.8 49.3 411 60-475 1-438 (438)
18 PRK14338 (dimethylallyl)adenos 100.0 5.1E-72 1.1E-76 617.6 50.4 418 50-482 12-454 (459)
19 TIGR00089 RNA modification enz 100.0 3.4E-72 7.3E-77 615.1 47.0 406 60-472 1-429 (429)
20 PRK14862 rimO ribosomal protei 100.0 5.7E-72 1.2E-76 614.3 47.2 405 55-475 4-440 (440)
21 PRK14339 (dimethylallyl)adenos 100.0 3.5E-71 7.7E-76 604.7 48.4 397 70-475 1-419 (420)
22 TIGR01125 MiaB-like tRNA modif 100.0 3.7E-71 8.1E-76 606.9 47.8 406 60-472 1-430 (430)
23 TIGR01579 MiaB-like-C MiaB-lik 100.0 6.3E-71 1.4E-75 602.5 45.0 392 63-462 1-414 (414)
24 PRK14334 (dimethylallyl)adenos 100.0 2.6E-70 5.6E-75 601.5 49.5 410 60-479 2-431 (440)
25 KOG2492 CDK5 activator-binding 100.0 1.4E-56 3.1E-61 463.3 31.1 418 55-477 69-549 (552)
26 TIGR02026 BchE magnesium-proto 100.0 8.2E-35 1.8E-39 324.9 32.4 302 75-388 25-386 (497)
27 PRK00955 hypothetical protein; 100.0 1.5E-33 3.3E-38 315.3 30.1 200 185-389 292-528 (620)
28 TIGR03471 HpnJ hopanoid biosyn 100.0 1.5E-33 3.3E-38 313.1 28.8 276 94-387 67-385 (472)
29 PRK01254 hypothetical protein; 100.0 1.9E-31 4E-36 296.5 20.9 200 185-387 372-608 (707)
30 PRK05481 lipoyl synthase; Prov 100.0 1.9E-30 4.2E-35 270.7 23.2 211 184-411 52-263 (289)
31 COG1031 Uncharacterized Fe-S o 99.9 2.1E-25 4.5E-30 235.7 31.8 289 184-477 182-508 (560)
32 COG1032 Fe-S oxidoreductase [E 99.9 1.8E-25 3.9E-30 246.8 29.1 283 109-399 91-415 (490)
33 PRK07094 biotin synthase; Prov 99.9 9.7E-25 2.1E-29 231.2 24.1 196 185-396 39-236 (323)
34 PRK05904 coproporphyrinogen II 99.9 1.1E-24 2.5E-29 233.4 19.3 209 188-409 10-225 (353)
35 TIGR00510 lipA lipoate synthas 99.9 1.2E-23 2.5E-28 220.3 22.6 195 183-389 61-258 (302)
36 PRK12928 lipoyl synthase; Prov 99.9 1.1E-23 2.5E-28 219.6 22.0 209 183-409 58-269 (290)
37 PRK08599 coproporphyrinogen II 99.9 2.3E-23 4.9E-28 225.4 21.4 192 186-388 3-200 (377)
38 PRK05628 coproporphyrinogen II 99.9 1.1E-22 2.3E-27 220.0 24.4 211 188-409 6-235 (375)
39 PRK09058 coproporphyrinogen II 99.9 2.5E-22 5.4E-27 221.9 22.6 194 184-388 61-263 (449)
40 TIGR01212 radical SAM protein, 99.9 4.1E-22 8.9E-27 209.5 21.6 190 188-388 21-226 (302)
41 PRK08446 coproporphyrinogen II 99.9 2.2E-22 4.7E-27 215.8 19.6 183 195-389 10-199 (350)
42 PRK05799 coproporphyrinogen II 99.9 4.8E-22 1E-26 214.9 21.9 190 187-388 6-199 (374)
43 PRK07379 coproporphyrinogen II 99.9 5.6E-22 1.2E-26 216.2 22.4 191 187-388 13-215 (400)
44 PRK08207 coproporphyrinogen II 99.9 8.3E-22 1.8E-26 219.0 23.0 215 184-408 163-393 (488)
45 PRK08898 coproporphyrinogen II 99.9 1.9E-21 4.1E-26 211.6 21.7 198 187-395 22-229 (394)
46 PRK09057 coproporphyrinogen II 99.9 2.4E-21 5.2E-26 209.9 21.9 210 188-408 8-229 (380)
47 TIGR00539 hemN_rel putative ox 99.9 1.4E-21 3E-26 210.3 19.7 196 188-394 4-207 (360)
48 PRK08208 coproporphyrinogen II 99.9 3.9E-21 8.5E-26 211.5 22.7 195 184-389 39-242 (430)
49 TIGR01210 conserved hypothetic 99.9 3.4E-21 7.4E-26 203.5 19.5 193 184-389 14-222 (313)
50 PRK06256 biotin synthase; Vali 99.9 6.8E-21 1.5E-25 203.0 21.8 196 188-399 60-260 (336)
51 PRK06582 coproporphyrinogen II 99.9 1.3E-20 2.7E-25 204.8 21.3 184 195-388 21-210 (390)
52 PRK05660 HemN family oxidoredu 99.9 3E-20 6.6E-25 201.2 23.9 197 186-393 8-213 (378)
53 PRK06294 coproporphyrinogen II 99.9 8.9E-21 1.9E-25 204.8 19.4 187 187-388 9-203 (370)
54 smart00729 Elp3 Elongator prot 99.9 2.1E-20 4.5E-25 182.2 19.0 194 186-389 2-201 (216)
55 TIGR00433 bioB biotin syntheta 99.9 9.7E-20 2.1E-24 190.4 24.6 195 186-396 29-228 (296)
56 PRK06245 cofG FO synthase subu 99.9 2.2E-20 4.8E-25 199.2 19.8 198 186-395 13-227 (336)
57 PRK08629 coproporphyrinogen II 99.8 6.7E-20 1.5E-24 201.5 21.5 189 184-386 52-245 (433)
58 PLN02428 lipoic acid synthase 99.8 1.2E-19 2.6E-24 192.5 21.8 209 185-409 102-312 (349)
59 TIGR00538 hemN oxygen-independ 99.8 4.9E-19 1.1E-23 196.2 24.7 187 186-383 51-246 (455)
60 PF00919 UPF0004: Uncharacteri 99.8 1.6E-20 3.5E-25 165.4 9.7 85 60-144 1-98 (98)
61 PRK13347 coproporphyrinogen II 99.8 7.7E-19 1.7E-23 194.5 24.1 188 185-383 51-247 (453)
62 PRK09249 coproporphyrinogen II 99.8 8.5E-19 1.8E-23 194.2 23.4 186 187-383 52-246 (453)
63 TIGR00423 radical SAM domain p 99.8 8E-19 1.7E-23 185.3 19.3 189 187-387 7-211 (309)
64 TIGR03550 F420_cofG 7,8-dideme 99.8 9.6E-19 2.1E-23 185.7 18.2 195 186-395 5-223 (322)
65 PRK06267 hypothetical protein; 99.8 5.7E-18 1.2E-22 181.7 21.9 188 186-395 28-222 (350)
66 TIGR01211 ELP3 histone acetylt 99.8 8E-18 1.7E-22 187.8 23.4 187 193-389 76-309 (522)
67 TIGR03551 F420_cofH 7,8-dideme 99.8 4E-18 8.6E-23 182.5 17.8 190 187-388 41-245 (343)
68 COG0635 HemN Coproporphyrinoge 99.8 1E-17 2.2E-22 183.2 20.7 213 185-408 35-262 (416)
69 COG1242 Predicted Fe-S oxidore 99.8 3.1E-17 6.6E-22 165.4 20.3 192 188-389 27-232 (312)
70 cd01335 Radical_SAM Radical SA 99.8 2.3E-17 5E-22 158.4 18.8 185 189-388 1-189 (204)
71 PRK08445 hypothetical protein; 99.8 2E-17 4.3E-22 177.2 19.0 191 188-388 45-248 (348)
72 TIGR03699 mena_SCO4550 menaqui 99.8 2.5E-17 5.5E-22 176.0 18.5 195 188-394 44-253 (340)
73 TIGR03700 mena_SCO4494 putativ 99.8 2.5E-17 5.5E-22 176.8 18.4 197 187-395 50-263 (351)
74 PF04055 Radical_SAM: Radical 99.7 3E-17 6.6E-22 153.5 14.4 162 189-364 1-166 (166)
75 PRK08508 biotin synthase; Prov 99.7 1.8E-16 3.9E-21 165.1 20.5 187 191-394 13-204 (279)
76 PLN02389 biotin synthase 99.7 8.5E-16 1.8E-20 166.1 23.8 198 185-398 82-287 (379)
77 PRK09240 thiH thiamine biosynt 99.7 4.2E-15 9.2E-20 160.7 20.1 195 186-398 75-280 (371)
78 COG1243 ELP3 Histone acetyltra 99.6 7.7E-15 1.7E-19 156.8 17.9 212 186-404 68-322 (515)
79 PRK15108 biotin synthase; Prov 99.6 3.1E-14 6.7E-19 152.6 22.6 194 186-396 43-243 (345)
80 TIGR02351 thiH thiazole biosyn 99.6 3.4E-14 7.3E-19 153.5 19.3 198 186-401 74-282 (366)
81 COG0502 BioB Biotin synthase a 99.6 1.4E-13 3.1E-18 144.8 19.8 194 185-395 50-249 (335)
82 PRK07360 FO synthase subunit 2 99.6 8E-14 1.7E-18 150.9 17.8 188 188-389 63-268 (371)
83 PRK08444 hypothetical protein; 99.5 1.6E-13 3.5E-18 147.2 18.9 195 188-394 52-261 (353)
84 PRK00164 moaA molybdenum cofac 99.5 1E-12 2.2E-17 139.9 23.7 182 186-385 18-203 (331)
85 PRK05926 hypothetical protein; 99.5 2.5E-13 5.5E-18 146.6 18.1 186 189-387 72-272 (370)
86 PRK09613 thiH thiamine biosynt 99.5 9.5E-13 2.1E-17 145.6 21.3 197 186-395 85-296 (469)
87 PRK13361 molybdenum cofactor b 99.5 3.9E-12 8.4E-17 135.6 23.3 181 186-384 15-198 (329)
88 TIGR02666 moaA molybdenum cofa 99.5 8.7E-12 1.9E-16 133.0 23.4 183 186-386 11-199 (334)
89 PRK05927 hypothetical protein; 99.5 1.1E-12 2.3E-17 140.9 16.2 190 188-388 48-251 (350)
90 TIGR02668 moaA_archaeal probab 99.5 1.2E-11 2.7E-16 130.0 23.3 178 186-382 11-190 (302)
91 TIGR03822 AblA_like_2 lysine-2 99.4 1.4E-11 3E-16 131.0 22.0 185 182-387 85-277 (321)
92 PTZ00413 lipoate synthase; Pro 99.4 1.3E-11 2.9E-16 131.2 21.0 182 185-378 149-333 (398)
93 PRK09234 fbiC FO synthase; Rev 99.4 8.2E-12 1.8E-16 146.7 20.2 187 188-386 529-730 (843)
94 PLN02951 Molybderin biosynthes 99.4 6.3E-11 1.4E-15 128.4 23.7 191 186-394 59-253 (373)
95 PRK09234 fbiC FO synthase; Rev 99.3 4.2E-11 9.1E-16 140.8 19.8 195 187-396 73-293 (843)
96 TIGR02493 PFLA pyruvate format 99.3 3.5E-10 7.5E-15 114.5 20.1 174 187-380 17-200 (235)
97 PRK14463 ribosomal RNA large s 99.3 9.7E-10 2.1E-14 118.0 23.5 182 184-383 102-293 (349)
98 PRK14455 ribosomal RNA large s 99.2 2E-09 4.4E-14 115.9 22.9 188 184-385 108-307 (356)
99 PRK05301 pyrroloquinoline quin 99.2 5.1E-09 1.1E-13 113.7 25.5 177 184-379 15-193 (378)
100 PRK14466 ribosomal RNA large s 99.2 4.9E-09 1.1E-13 111.9 24.6 183 184-384 102-294 (345)
101 TIGR02109 PQQ_syn_pqqE coenzym 99.2 5E-09 1.1E-13 112.9 23.8 176 184-378 6-183 (358)
102 TIGR01290 nifB nitrogenase cof 99.2 7.7E-09 1.7E-13 114.5 24.9 187 184-386 23-236 (442)
103 PRK14456 ribosomal RNA large s 99.1 6.4E-09 1.4E-13 112.3 23.5 188 184-385 120-323 (368)
104 COG2100 Predicted Fe-S oxidore 99.1 3.2E-08 6.9E-13 102.4 27.1 268 188-474 110-413 (414)
105 COG1060 ThiH Thiamine biosynth 99.1 1.8E-09 3.9E-14 116.4 17.6 194 187-389 61-268 (370)
106 TIGR00238 KamA family protein. 99.1 4.1E-09 8.9E-14 112.6 19.6 188 182-394 110-304 (331)
107 COG0320 LipA Lipoate synthase 99.1 5.2E-09 1.1E-13 106.2 18.7 209 184-410 69-279 (306)
108 COG2896 MoaA Molybdenum cofact 99.1 1.2E-08 2.5E-13 107.5 21.9 193 187-398 13-210 (322)
109 TIGR02495 NrdG2 anaerobic ribo 99.1 1.3E-08 2.8E-13 99.8 20.9 164 184-368 15-183 (191)
110 PRK14457 ribosomal RNA large s 99.1 1.7E-08 3.6E-13 108.3 22.6 191 184-385 100-300 (345)
111 PRK11145 pflA pyruvate formate 99.1 1.1E-08 2.3E-13 104.6 19.5 179 186-384 21-209 (246)
112 PRK14470 ribosomal RNA large s 99.1 4.5E-08 9.8E-13 104.7 24.4 185 184-382 96-288 (336)
113 TIGR03470 HpnH hopanoid biosyn 99.0 3.4E-08 7.4E-13 105.0 22.7 178 184-384 27-207 (318)
114 PRK14467 ribosomal RNA large s 99.0 4.2E-08 9.2E-13 105.3 22.8 191 184-385 98-299 (348)
115 PRK14460 ribosomal RNA large s 99.0 8.2E-08 1.8E-12 103.5 24.5 187 184-385 101-302 (354)
116 PRK14459 ribosomal RNA large s 99.0 5.3E-08 1.1E-12 105.2 22.9 188 184-385 120-329 (373)
117 PRK14453 chloramphenicol/florf 99.0 4.5E-08 9.8E-13 105.1 22.0 184 185-383 100-296 (347)
118 COG1244 Predicted Fe-S oxidore 99.0 2.5E-08 5.3E-13 103.5 17.7 193 186-389 48-257 (358)
119 PRK11194 ribosomal RNA large s 99.0 1.4E-07 3E-12 102.1 24.1 186 184-385 102-307 (372)
120 PRK14469 ribosomal RNA large s 99.0 1.4E-07 3.1E-12 101.4 24.1 185 184-382 100-293 (343)
121 PRK14468 ribosomal RNA large s 99.0 2E-07 4.3E-12 100.1 25.0 183 184-383 92-289 (343)
122 TIGR00048 radical SAM enzyme, 98.9 1.5E-07 3.3E-12 101.5 23.6 188 184-385 104-303 (355)
123 PRK14461 ribosomal RNA large s 98.9 9.3E-08 2E-12 102.6 21.3 188 184-386 106-323 (371)
124 COG1856 Uncharacterized homolo 98.9 5.5E-08 1.2E-12 96.0 17.9 193 190-398 16-209 (275)
125 PRK14464 ribosomal RNA large s 98.9 1E-07 2.2E-12 102.0 20.6 183 186-386 97-288 (344)
126 TIGR03821 AblA_like_1 lysine-2 98.9 1.6E-07 3.4E-12 100.1 21.0 183 186-394 97-287 (321)
127 PRK14462 ribosomal RNA large s 98.9 5.6E-07 1.2E-11 96.8 24.2 187 184-385 109-308 (356)
128 PRK14465 ribosomal RNA large s 98.8 4.8E-07 1E-11 96.9 22.9 179 184-379 104-294 (342)
129 PRK14454 ribosomal RNA large s 98.8 1.7E-06 3.6E-11 93.0 23.6 187 184-384 100-295 (342)
130 PF01938 TRAM: TRAM domain; I 98.8 5.4E-08 1.2E-12 78.3 9.1 61 414-475 1-61 (61)
131 TIGR03820 lys_2_3_AblA lysine- 98.7 1.1E-06 2.4E-11 96.0 20.9 183 182-387 105-295 (417)
132 PRK13762 tRNA-modifying enzyme 98.7 1.5E-06 3.3E-11 92.6 20.6 171 191-384 64-266 (322)
133 KOG2672 Lipoate synthase [Coen 98.6 2.3E-07 5E-12 94.2 12.0 179 188-379 114-295 (360)
134 COG2516 Biotin synthase-relate 98.6 9.1E-07 2E-11 91.9 16.3 193 184-392 28-238 (339)
135 COG0820 Predicted Fe-S-cluster 98.6 2E-06 4.3E-11 91.4 19.2 186 183-384 99-299 (349)
136 COG0731 Fe-S oxidoreductases [ 98.6 2.2E-06 4.9E-11 89.4 19.2 175 194-388 33-222 (296)
137 TIGR03278 methan_mark_10 putat 98.4 2E-05 4.4E-10 86.3 21.1 166 198-381 38-209 (404)
138 COG0535 Predicted Fe-S oxidore 98.3 0.00014 3.1E-09 77.1 24.3 181 184-382 18-200 (347)
139 COG1533 SplB DNA repair photol 98.3 3.7E-05 8E-10 81.0 18.0 188 187-382 31-226 (297)
140 KOG2900 Biotin synthase [Coenz 98.2 2.5E-06 5.4E-11 85.7 7.6 181 192-388 91-278 (380)
141 COG4277 Predicted DNA-binding 98.2 2.7E-05 5.8E-10 80.3 15.1 186 191-388 60-266 (404)
142 PRK13745 anaerobic sulfatase-m 98.2 0.00016 3.5E-09 79.7 21.9 181 184-380 12-206 (412)
143 TIGR02494 PFLE_PFLC glycyl-rad 98.2 7.3E-05 1.6E-09 78.5 17.2 156 213-386 105-265 (295)
144 PRK13758 anaerobic sulfatase-m 98.1 0.00036 7.7E-09 75.6 22.7 174 188-376 8-193 (370)
145 KOG2535 RNA polymerase II elon 98.0 6E-05 1.3E-09 78.9 13.2 171 212-389 148-339 (554)
146 TIGR03365 Bsubt_queE 7-cyano-7 98.0 0.00043 9.3E-09 70.8 19.3 147 187-368 25-176 (238)
147 COG1509 KamA Lysine 2,3-aminom 98.0 0.0005 1.1E-08 73.1 19.3 185 182-388 108-300 (369)
148 COG0641 AslB Arylsulfatase reg 97.9 0.00046 1E-08 75.2 18.6 198 195-407 18-223 (378)
149 COG1180 PflA Pyruvate-formate 97.9 0.00034 7.4E-09 72.6 16.7 174 185-379 35-215 (260)
150 COG1625 Fe-S oxidoreductase, r 97.7 0.00087 1.9E-08 72.6 16.0 173 199-387 44-223 (414)
151 TIGR03279 cyano_FeS_chp putati 97.3 0.007 1.5E-07 66.7 15.6 109 298-409 139-255 (433)
152 cd02068 radical_SAM_B12_BD B12 97.2 0.0022 4.7E-08 58.9 9.4 68 94-162 38-114 (127)
153 PF02310 B12-binding: B12 bind 97.1 0.0025 5.5E-08 57.4 9.0 80 75-155 17-121 (121)
154 PRK10076 pyruvate formate lyas 97.0 0.034 7.4E-07 56.1 16.4 153 212-382 17-172 (213)
155 COG1313 PflX Uncharacterized F 97.0 0.0088 1.9E-07 62.1 11.9 180 191-391 124-308 (335)
156 COG0602 NrdG Organic radical a 96.6 0.0038 8.2E-08 62.9 6.0 63 193-261 30-97 (212)
157 TIGR00640 acid_CoA_mut_C methy 96.4 0.038 8.2E-07 51.6 10.9 97 59-157 3-122 (132)
158 PF13353 Fer4_12: 4Fe-4S singl 96.3 0.012 2.7E-07 54.2 7.3 71 189-262 9-82 (139)
159 TIGR02826 RNR_activ_nrdG3 anae 96.3 0.0092 2E-07 56.7 6.5 69 186-261 16-86 (147)
160 PF13394 Fer4_14: 4Fe-4S singl 96.0 0.025 5.4E-07 50.9 7.6 54 191-244 4-61 (119)
161 COG2108 Uncharacterized conser 95.9 0.078 1.7E-06 56.0 11.7 163 188-378 31-202 (353)
162 cd02072 Glm_B12_BD B12 binding 95.7 0.055 1.2E-06 50.2 8.6 80 76-157 17-125 (128)
163 TIGR01501 MthylAspMutase methy 95.6 0.095 2E-06 49.1 9.8 82 76-157 19-130 (134)
164 cd03174 DRE_TIM_metallolyase D 95.5 0.91 2E-05 46.5 17.5 150 211-375 13-166 (265)
165 COG5014 Predicted Fe-S oxidore 95.2 0.69 1.5E-05 45.0 14.3 154 192-367 48-212 (228)
166 PRK02261 methylaspartate mutas 95.0 0.3 6.6E-06 45.8 11.3 100 60-159 5-134 (137)
167 cd02067 B12-binding B12 bindin 94.6 0.15 3.3E-06 46.0 7.8 72 76-147 17-111 (119)
168 TIGR02491 NrdG anaerobic ribon 94.4 0.24 5.1E-06 47.3 9.1 67 192-262 22-93 (154)
169 cd02065 B12-binding_like B12 b 93.9 0.13 2.9E-06 46.3 6.0 77 77-156 18-116 (125)
170 COG2185 Sbm Methylmalonyl-CoA 93.2 0.75 1.6E-05 43.5 9.9 97 59-157 13-132 (143)
171 PRK11121 nrdG anaerobic ribonu 93.0 0.48 1E-05 45.3 8.5 66 193-263 24-96 (154)
172 PLN02746 hydroxymethylglutaryl 93.0 3.9 8.4E-05 44.4 16.2 146 210-374 61-216 (347)
173 cd02071 MM_CoA_mut_B12_BD meth 92.6 0.68 1.5E-05 42.3 8.6 71 77-147 18-111 (122)
174 KOG2876 Molybdenum cofactor bi 91.3 0.42 9.2E-06 49.3 6.1 177 189-386 15-198 (323)
175 PRK05692 hydroxymethylglutaryl 90.2 9.4 0.0002 40.3 15.3 147 211-374 20-174 (287)
176 PRK09426 methylmalonyl-CoA mut 89.7 2.4 5.3E-05 50.3 11.4 97 59-157 583-702 (714)
177 cd07938 DRE_TIM_HMGL 3-hydroxy 89.5 15 0.00033 38.5 16.1 148 210-374 13-168 (274)
178 cd07948 DRE_TIM_HCS Saccharomy 88.8 21 0.00046 37.1 16.5 142 211-374 16-160 (262)
179 cd07939 DRE_TIM_NifV Streptomy 87.8 20 0.00044 36.9 15.6 140 212-374 15-158 (259)
180 KOG2492 CDK5 activator-binding 85.2 0.85 1.8E-05 49.7 3.7 41 50-90 386-427 (552)
181 cd07944 DRE_TIM_HOA_like 4-hyd 85.0 52 0.0011 34.2 17.9 140 212-374 15-157 (266)
182 TIGR03217 4OH_2_O_val_ald 4-hy 84.1 63 0.0014 34.9 17.5 139 212-374 19-162 (333)
183 PRK11858 aksA trans-homoaconit 83.8 38 0.00082 37.2 16.0 142 212-375 21-165 (378)
184 PF00682 HMGL-like: HMGL-like 83.2 7.4 0.00016 39.3 9.6 145 213-375 10-157 (237)
185 PRK14818 NADH dehydrogenase su 82.7 3.1 6.8E-05 40.5 6.1 70 59-130 31-111 (173)
186 TIGR02660 nifV_homocitr homoci 82.4 41 0.00088 36.7 15.5 141 211-373 17-160 (365)
187 cd07940 DRE_TIM_IPMS 2-isoprop 82.2 49 0.0011 34.3 15.4 145 212-374 15-162 (268)
188 TIGR02090 LEU1_arch isopropylm 82.0 57 0.0012 35.6 16.4 143 211-375 16-161 (363)
189 cd07941 DRE_TIM_LeuA3 Desulfob 81.8 61 0.0013 33.8 16.0 149 212-373 15-169 (273)
190 cd02070 corrinoid_protein_B12- 81.0 4.4 9.6E-05 40.2 6.8 66 75-142 99-188 (201)
191 PRK14816 NADH dehydrogenase su 80.6 3.8 8.2E-05 40.3 5.9 68 60-131 42-123 (182)
192 PRK08195 4-hyroxy-2-oxovalerat 80.2 92 0.002 33.7 17.8 139 212-374 20-163 (337)
193 PRK00915 2-isopropylmalate syn 79.1 50 0.0011 37.8 15.3 146 211-374 20-168 (513)
194 cd07937 DRE_TIM_PC_TC_5S Pyruv 79.0 87 0.0019 32.7 16.5 145 212-375 16-169 (275)
195 PRK14041 oxaloacetate decarbox 78.9 1.1E+02 0.0024 34.8 17.6 140 213-373 21-171 (467)
196 COG3269 Predicted RNA-binding 78.7 14 0.00031 30.9 7.9 57 417-477 15-71 (73)
197 PRK07535 methyltetrahydrofolat 78.5 19 0.00042 37.5 10.8 145 210-368 18-184 (261)
198 TIGR01957 nuoB_fam NADH-quinon 75.3 6.7 0.00014 37.3 5.8 58 73-130 29-98 (145)
199 cd00423 Pterin_binding Pterin 75.0 5.6 0.00012 41.1 5.7 142 211-367 18-194 (258)
200 COG0685 MetF 5,10-methylenetet 72.6 62 0.0013 34.3 12.9 119 212-349 87-210 (291)
201 PRK09389 (R)-citramalate synth 72.6 1.4E+02 0.0031 34.0 16.6 142 211-374 18-162 (488)
202 PRK09432 metF 5,10-methylenete 72.3 84 0.0018 33.4 13.8 50 212-261 92-141 (296)
203 cd07945 DRE_TIM_CMS Leptospira 71.9 90 0.0019 32.8 13.9 147 211-374 13-166 (280)
204 PRK14813 NADH dehydrogenase su 71.6 3.4 7.3E-05 40.9 2.9 67 61-129 30-107 (189)
205 cd02069 methionine_synthase_B1 71.3 10 0.00022 38.3 6.4 52 76-127 106-178 (213)
206 TIGR00973 leuA_bact 2-isopropy 71.3 94 0.002 35.5 14.8 146 211-374 17-165 (494)
207 TIGR02370 pyl_corrinoid methyl 70.9 10 0.00022 37.6 6.3 65 75-141 101-189 (197)
208 PF04016 DUF364: Domain of unk 70.3 5.9 0.00013 37.6 4.2 52 94-146 61-117 (147)
209 PRK12344 putative alpha-isopro 69.6 1.3E+02 0.0028 34.7 15.5 150 211-373 21-176 (524)
210 CHL00023 ndhK NADH dehydrogena 69.1 10 0.00023 38.4 5.8 69 60-130 33-112 (225)
211 PRK01254 hypothetical protein; 68.6 22 0.00048 41.8 9.1 58 106-164 135-209 (707)
212 cd07943 DRE_TIM_HOA 4-hydroxy- 68.0 1.5E+02 0.0033 30.5 17.6 138 212-373 17-159 (263)
213 PRK14040 oxaloacetate decarbox 68.0 2.2E+02 0.0047 33.4 17.0 51 213-264 23-75 (593)
214 PRK06411 NADH dehydrogenase su 67.2 11 0.00023 37.4 5.3 58 73-130 47-115 (183)
215 PRK11613 folP dihydropteroate 65.9 1.8E+02 0.004 30.7 14.6 138 212-367 33-207 (282)
216 PRK13168 rumA 23S rRNA m(5)U19 64.2 43 0.00093 37.5 10.2 60 420-483 15-74 (443)
217 PRK14815 NADH dehydrogenase su 63.9 15 0.00034 36.1 5.7 69 60-130 34-114 (183)
218 PRK09282 pyruvate carboxylase 63.5 2.6E+02 0.0057 32.7 16.6 52 213-264 22-74 (592)
219 COG2265 TrmA SAM-dependent met 63.1 33 0.00071 38.5 8.9 58 419-480 3-60 (432)
220 TIGR01496 DHPS dihydropteroate 61.9 1.5E+02 0.0031 30.9 12.9 66 211-281 17-88 (257)
221 cd00739 DHPS DHPS subgroup of 60.6 1.7E+02 0.0036 30.5 13.1 64 212-280 19-88 (257)
222 PRK14819 NADH dehydrogenase su 60.4 20 0.00043 37.2 6.0 70 59-130 31-112 (264)
223 TIGR01108 oadA oxaloacetate de 58.8 3.5E+02 0.0077 31.6 17.9 52 213-264 17-69 (582)
224 PLN03228 methylthioalkylmalate 57.9 2.5E+02 0.0053 32.3 14.8 149 211-374 100-258 (503)
225 TIGR01227 hutG formimidoylglut 57.3 1.5E+02 0.0033 31.4 12.4 156 217-382 98-289 (307)
226 PF06180 CbiK: Cobalt chelatas 57.0 1.1E+02 0.0024 32.0 11.0 150 215-387 56-215 (262)
227 TIGR00977 LeuA_rel 2-isopropyl 56.8 3.6E+02 0.0079 31.1 16.9 151 211-375 17-174 (526)
228 cd00537 MTHFR Methylenetetrahy 56.5 69 0.0015 33.2 9.5 120 212-352 68-198 (274)
229 cd03315 MLE_like Muconate lact 56.4 1.7E+02 0.0037 30.1 12.4 93 215-318 85-177 (265)
230 TIGR03278 methan_mark_10 putat 55.9 1.2E+02 0.0025 33.9 11.5 45 251-295 55-101 (404)
231 cd01301 rDP_like renal dipepti 54.3 2.2E+02 0.0048 30.4 13.0 138 220-375 116-262 (309)
232 COG1964 Predicted Fe-S oxidore 52.6 3.1E+02 0.0068 30.9 13.9 155 202-378 78-241 (475)
233 PRK14814 NADH dehydrogenase su 52.6 23 0.00049 35.1 4.8 68 61-130 35-114 (186)
234 COG0159 TrpA Tryptophan syntha 52.4 3E+02 0.0066 28.9 14.2 26 313-338 69-94 (265)
235 PRK08005 epimerase; Validated 52.4 2.6E+02 0.0057 28.2 13.1 135 213-388 9-146 (210)
236 cd02072 Glm_B12_BD B12 binding 51.2 1.1E+02 0.0024 28.5 8.8 57 320-385 62-119 (128)
237 COG3260 Ni,Fe-hydrogenase III 50.4 23 0.0005 33.3 4.2 58 64-128 25-88 (148)
238 PF04481 DUF561: Protein of un 50.4 3E+02 0.0065 28.2 14.0 130 212-374 22-151 (242)
239 COG2014 Uncharacterized conser 50.3 29 0.00062 35.1 5.1 54 95-149 164-222 (250)
240 TIGR00676 fadh2 5,10-methylene 49.1 1.6E+02 0.0035 30.7 10.9 129 212-365 68-206 (272)
241 TIGR00696 wecB_tagA_cpsF bacte 48.3 84 0.0018 30.8 8.0 51 322-376 58-108 (177)
242 KOG1160 Fe-S oxidoreductase [E 48.2 4.1E+02 0.009 30.0 13.8 117 299-418 404-526 (601)
243 TIGR03572 WbuZ glycosyl amidat 47.0 2.9E+02 0.0062 27.7 12.1 131 220-379 33-177 (232)
244 cd05014 SIS_Kpsf KpsF-like pro 46.8 68 0.0015 28.6 6.8 63 63-125 3-82 (128)
245 PRK12331 oxaloacetate decarbox 46.6 4.8E+02 0.01 29.5 17.9 141 213-374 22-173 (448)
246 cd04731 HisF The cyclase subun 46.5 2.9E+02 0.0062 27.9 12.1 135 218-379 28-173 (243)
247 TIGR01501 MthylAspMutase methy 45.8 1.2E+02 0.0025 28.6 8.2 58 319-385 63-121 (134)
248 PLN02321 2-isopropylmalate syn 45.6 3.7E+02 0.0081 31.8 14.0 147 210-374 101-259 (632)
249 PLN02540 methylenetetrahydrofo 45.0 1.8E+02 0.0039 33.9 11.1 52 212-263 68-125 (565)
250 PF08902 DUF1848: Domain of un 44.8 3E+02 0.0064 29.0 11.7 50 213-264 55-110 (266)
251 PF05818 TraT: Enterobacterial 44.6 39 0.00085 34.3 5.1 55 45-101 8-65 (215)
252 KOG3799 Rab3 effector RIM1 and 44.5 8.4 0.00018 35.9 0.4 17 190-206 75-91 (169)
253 PRK13774 formimidoylglutamase; 43.4 2.3E+02 0.0049 30.2 11.1 157 216-382 106-293 (311)
254 TIGR00288 conserved hypothetic 42.9 66 0.0014 31.2 6.2 56 71-126 64-137 (160)
255 COG2875 CobM Precorrin-4 methy 41.8 1.7E+02 0.0036 30.3 9.0 35 212-246 57-91 (254)
256 PRK10812 putative DNAse; Provi 40.9 1.2E+02 0.0026 31.5 8.4 124 215-369 21-147 (265)
257 TIGR02082 metH 5-methyltetrahy 40.7 48 0.001 41.9 6.1 53 77-129 751-824 (1178)
258 PRK14820 NADH dehydrogenase su 40.5 74 0.0016 31.4 6.2 62 65-130 41-114 (180)
259 PF00809 Pterin_bind: Pterin b 40.4 2.1E+02 0.0045 28.6 9.7 141 213-367 15-191 (210)
260 TIGR03127 RuMP_HxlB 6-phospho 40.3 1.1E+02 0.0024 29.3 7.5 67 59-127 31-109 (179)
261 cd03409 Chelatase_Class_II Cla 39.8 1.3E+02 0.0028 25.7 7.2 60 322-385 16-75 (101)
262 PF13552 DUF4127: Protein of u 39.7 75 0.0016 36.3 7.1 29 75-103 280-309 (497)
263 TIGR00612 ispG_gcpE 1-hydroxy- 39.6 5.4E+02 0.012 28.1 13.2 139 213-367 30-190 (346)
264 PHA01735 hypothetical protein 38.9 44 0.00096 27.7 3.6 42 352-399 30-75 (76)
265 COG0119 LeuA Isopropylmalate/h 38.9 6E+02 0.013 28.4 13.9 144 211-374 18-165 (409)
266 TIGR00284 dihydropteroate synt 38.9 2.8E+02 0.0061 31.8 11.4 127 217-366 165-305 (499)
267 PRK15452 putative protease; Pr 38.8 1.6E+02 0.0034 33.2 9.4 74 298-377 24-98 (443)
268 COG1941 FrhG Coenzyme F420-red 38.5 66 0.0014 33.2 5.6 64 66-130 15-90 (247)
269 PRK13292 trifunctional NADH de 38.2 46 0.00099 40.2 5.2 69 60-130 23-103 (788)
270 COG1618 Predicted nucleotide k 37.6 2.6E+02 0.0056 27.5 9.2 67 94-160 99-176 (179)
271 cd01836 FeeA_FeeB_like SGNH_hy 37.1 1.3E+02 0.0028 28.7 7.4 59 60-126 40-114 (191)
272 COG5012 Predicted cobalamin bi 37.0 64 0.0014 32.9 5.3 44 76-119 122-184 (227)
273 COG3925 N-terminal domain of t 36.8 70 0.0015 28.2 4.7 46 77-126 22-67 (103)
274 PLN02615 arginase 36.8 5.8E+02 0.013 27.6 13.7 155 216-382 132-315 (338)
275 PF02219 MTHFR: Methylenetetra 36.7 1.3E+02 0.0029 31.5 8.0 115 212-346 80-208 (287)
276 cd04723 HisA_HisF Phosphoribos 36.3 3E+02 0.0064 28.0 10.2 135 218-383 36-172 (233)
277 PF03808 Glyco_tran_WecB: Glyc 36.1 1.2E+02 0.0025 29.3 6.9 52 322-376 58-109 (172)
278 PLN02495 oxidoreductase, actin 35.9 1E+02 0.0023 34.0 7.2 58 320-380 95-152 (385)
279 PRK13585 1-(5-phosphoribosyl)- 35.7 4.7E+02 0.01 26.2 12.0 131 219-378 34-172 (241)
280 COG0113 HemB Delta-aminolevuli 35.4 5.5E+02 0.012 27.6 11.9 74 187-264 35-115 (330)
281 PRK14024 phosphoribosyl isomer 35.3 5E+02 0.011 26.4 14.0 132 218-378 33-169 (241)
282 cd00452 KDPG_aldolase KDPG and 35.0 4.4E+02 0.0094 25.7 14.0 117 211-377 10-126 (190)
283 PRK03501 ppnK inorganic polyph 34.4 1.8E+02 0.004 30.3 8.5 59 58-116 2-61 (264)
284 PF00834 Ribul_P_3_epim: Ribul 34.3 2E+02 0.0044 28.7 8.4 150 214-408 9-161 (201)
285 PRK02261 methylaspartate mutas 34.0 1.8E+02 0.0039 27.2 7.6 49 320-372 66-116 (137)
286 cd01822 Lysophospholipase_L1_l 33.8 1.7E+02 0.0036 27.3 7.5 60 60-126 36-109 (177)
287 PRK09490 metH B12-dependent me 33.8 72 0.0016 40.4 6.1 53 77-129 770-843 (1229)
288 PF00290 Trp_syntA: Tryptophan 33.8 4.9E+02 0.011 27.2 11.4 31 341-374 116-146 (259)
289 PF10087 DUF2325: Uncharacteri 33.3 1.3E+02 0.0028 26.0 6.1 31 94-124 47-81 (97)
290 COG0826 Collagenase and relate 33.3 2.1E+02 0.0046 31.1 9.0 74 298-376 27-100 (347)
291 PRK14817 NADH dehydrogenase su 33.1 64 0.0014 31.9 4.5 31 73-103 47-83 (181)
292 COG2355 Zn-dependent dipeptida 32.8 5.3E+02 0.011 27.8 11.6 139 214-374 105-258 (313)
293 TIGR01754 flav_RNR ribonucleot 31.9 1.3E+02 0.0029 27.7 6.3 54 75-128 18-91 (140)
294 cd07942 DRE_TIM_LeuA Mycobacte 31.9 6.4E+02 0.014 26.6 15.4 153 201-367 4-168 (284)
295 cd03412 CbiK_N Anaerobic cobal 31.5 1.9E+02 0.0041 26.5 7.2 62 323-384 17-85 (127)
296 PF06506 PrpR_N: Propionate ca 30.9 2.9E+02 0.0063 26.6 8.8 88 58-159 77-164 (176)
297 PRK13731 conjugal transfer sur 30.8 61 0.0013 33.4 4.0 43 58-101 50-95 (243)
298 cd05013 SIS_RpiR RpiR-like pro 30.6 2.1E+02 0.0046 25.2 7.4 66 59-126 14-96 (139)
299 PRK12581 oxaloacetate decarbox 29.8 8.8E+02 0.019 27.6 17.1 50 214-264 32-83 (468)
300 TIGR00677 fadh2_euk methylenet 29.8 6.8E+02 0.015 26.3 13.8 119 212-349 69-196 (281)
301 cd06556 ICL_KPHMT Members of t 29.8 1.5E+02 0.0032 30.5 6.8 54 320-374 55-108 (240)
302 PRK12330 oxaloacetate decarbox 29.6 6E+02 0.013 29.2 12.1 55 214-274 152-206 (499)
303 TIGR01230 agmatinase agmatinas 29.5 6.6E+02 0.014 26.1 13.8 151 217-382 80-256 (275)
304 PF01261 AP_endonuc_2: Xylose 29.5 4.9E+02 0.011 24.6 10.8 71 298-377 9-93 (213)
305 cd05005 SIS_PHI Hexulose-6-pho 29.4 2.1E+02 0.0046 27.4 7.6 69 59-129 34-114 (179)
306 PRK08091 ribulose-phosphate 3- 28.9 6.5E+02 0.014 25.8 17.3 133 212-385 20-155 (228)
307 PRK09282 pyruvate carboxylase 28.6 8.6E+02 0.019 28.5 13.5 124 214-368 151-274 (592)
308 PRK12331 oxaloacetate decarbox 28.5 6.6E+02 0.014 28.4 12.1 46 214-263 151-196 (448)
309 PRK09271 flavodoxin; Provision 28.4 1.9E+02 0.004 27.5 6.8 53 75-127 18-94 (160)
310 TIGR01229 rocF_arginase argina 28.2 6.8E+02 0.015 26.4 11.7 85 299-383 167-277 (300)
311 PF05853 DUF849: Prokaryotic p 28.2 5.7E+02 0.012 26.7 10.9 137 211-366 20-161 (272)
312 cd06533 Glyco_transf_WecG_TagA 28.1 1.6E+02 0.0035 28.4 6.4 53 321-376 55-107 (171)
313 PRK12330 oxaloacetate decarbox 28.0 9.7E+02 0.021 27.5 17.0 51 213-264 23-75 (499)
314 PRK13587 1-(5-phosphoribosyl)- 28.0 6.5E+02 0.014 25.6 12.1 134 220-383 34-175 (234)
315 TIGR03555 F420_mer 5,10-methyl 27.8 5.9E+02 0.013 27.0 11.2 105 214-335 9-122 (325)
316 TIGR00479 rumA 23S rRNA (uraci 27.7 2.2E+02 0.0048 31.6 8.2 44 435-481 7-50 (431)
317 COG0036 Rpe Pentose-5-phosphat 27.3 6.9E+02 0.015 25.6 11.1 127 216-367 70-216 (220)
318 TIGR00393 kpsF KpsF/GutQ famil 26.9 2.1E+02 0.0046 29.1 7.4 63 64-126 4-83 (268)
319 PRK10425 DNase TatD; Provision 26.8 4.1E+02 0.0088 27.5 9.5 123 214-367 15-142 (258)
320 PF09370 TIM-br_sig_trns: TIM- 25.7 2E+02 0.0043 30.3 6.7 75 63-152 151-253 (268)
321 cd03316 MR_like Mandelate race 25.6 6.9E+02 0.015 26.6 11.4 98 215-318 139-237 (357)
322 PF13714 PEP_mutase: Phosphoen 25.6 5.4E+02 0.012 26.4 10.0 82 320-407 52-133 (238)
323 cd06167 LabA_like LabA_like pr 25.4 1.4E+02 0.003 27.5 5.2 62 67-134 77-139 (149)
324 TIGR00007 phosphoribosylformim 25.2 6.8E+02 0.015 24.8 12.2 137 219-383 30-172 (230)
325 PRK08745 ribulose-phosphate 3- 25.1 7.4E+02 0.016 25.2 12.7 136 213-388 12-150 (223)
326 PRK00923 sirohydrochlorin coba 25.0 3.1E+02 0.0067 24.7 7.4 60 322-386 17-77 (126)
327 COG0821 gcpE 1-hydroxy-2-methy 24.9 9.4E+02 0.02 26.3 13.4 136 212-367 31-192 (361)
328 PRK05474 xylose isomerase; Pro 24.9 5.3E+02 0.012 29.0 10.2 143 226-370 88-258 (437)
329 cd04501 SGNH_hydrolase_like_4 24.8 2.8E+02 0.006 26.1 7.4 63 61-130 32-108 (183)
330 PRK12336 translation initiatio 24.6 3.4E+02 0.0074 27.1 8.1 54 417-474 147-200 (201)
331 cd03319 L-Ala-DL-Glu_epimerase 24.5 8.4E+02 0.018 25.6 13.0 92 215-318 134-225 (316)
332 PRK11543 gutQ D-arabinose 5-ph 24.5 2.3E+02 0.005 29.8 7.4 66 59-126 43-125 (321)
333 cd06808 PLPDE_III Type III Pyr 24.4 6.4E+02 0.014 24.2 13.3 45 300-350 108-154 (211)
334 cd03328 MR_like_3 Mandelate ra 23.9 5.8E+02 0.013 27.5 10.4 94 214-318 137-230 (352)
335 PF03016 Exostosin: Exostosin 23.9 90 0.002 32.2 4.1 35 68-103 32-67 (302)
336 PRK01722 formimidoylglutamase; 23.9 8.9E+02 0.019 25.7 12.1 156 217-382 104-296 (320)
337 cd03416 CbiX_SirB_N Sirohydroc 23.8 4.6E+02 0.01 22.4 8.2 59 323-385 16-74 (101)
338 COG4956 Integral membrane prot 23.7 2.5E+02 0.0055 30.2 7.1 123 326-467 217-343 (356)
339 KOG2368 Hydroxymethylglutaryl- 23.3 2.7E+02 0.0058 28.7 6.9 64 184-264 149-212 (316)
340 cd03329 MR_like_4 Mandelate ra 22.9 9.8E+02 0.021 25.8 12.0 96 214-318 142-237 (368)
341 cd01825 SGNH_hydrolase_peri1 S 22.9 3E+02 0.0064 25.9 7.2 60 60-128 24-106 (189)
342 COG0648 Nfo Endonuclease IV [D 22.9 7.7E+02 0.017 26.1 10.6 127 211-378 81-214 (280)
343 TIGR00642 mmCoA_mut_beta methy 22.8 4.9E+02 0.011 30.8 10.0 98 58-156 494-614 (619)
344 cd00945 Aldolase_Class_I Class 22.8 6.5E+02 0.014 23.7 14.9 134 215-375 11-149 (201)
345 PRK02271 methylenetetrahydrome 22.7 8.7E+02 0.019 25.7 11.4 106 214-336 11-125 (325)
346 PRK15452 putative protease; Pr 22.7 1.1E+03 0.024 26.6 12.5 23 220-242 13-35 (443)
347 PRK13384 delta-aminolevulinic 22.4 3.6E+02 0.0077 29.1 8.0 57 204-264 49-113 (322)
348 TIGR00736 nifR3_rel_arch TIM-b 22.2 7.6E+02 0.016 25.3 10.2 134 223-378 35-171 (231)
349 PF10649 DUF2478: Protein of u 22.2 1.7E+02 0.0037 28.3 5.2 54 64-123 68-128 (159)
350 cd00384 ALAD_PBGS Porphobilino 22.2 3.8E+02 0.0082 28.8 8.1 56 205-264 40-103 (314)
351 cd00635 PLPDE_III_YBL036c_like 22.1 4.2E+02 0.009 26.4 8.3 63 299-367 117-184 (222)
352 PF08821 CGGC: CGGC domain; I 22.1 2.5E+02 0.0054 25.3 6.0 8 96-103 66-73 (107)
353 COG1794 RacX Aspartate racemas 21.9 67 0.0014 32.9 2.4 67 57-127 116-197 (230)
354 PRK00957 methionine synthase; 21.9 8.6E+02 0.019 25.5 11.0 64 338-409 237-303 (305)
355 PRK09283 delta-aminolevulinic 21.8 3.5E+02 0.0076 29.2 7.8 55 206-264 49-111 (323)
356 cd06334 PBP1_ABC_ligand_bindin 21.4 3.1E+02 0.0068 29.2 7.7 63 57-125 139-202 (351)
357 TIGR03842 F420_CPS_4043 F420-d 21.4 9.2E+02 0.02 25.6 11.3 106 214-336 10-123 (330)
358 PF00490 ALAD: Delta-aminolevu 21.3 2E+02 0.0043 31.0 5.9 58 206-264 47-111 (324)
359 PRK15424 propionate catabolism 20.8 3.4E+02 0.0074 31.4 8.2 87 58-159 107-193 (538)
360 COG2513 PrpB PEP phosphonomuta 20.8 6.9E+02 0.015 26.6 9.7 82 315-404 52-143 (289)
361 cd04823 ALAD_PBGS_aspartate_ri 20.7 3.9E+02 0.0085 28.8 7.9 59 205-264 43-108 (320)
362 cd01096 Alkanal_monooxygenase 20.6 9.3E+02 0.02 25.3 11.1 109 215-335 20-138 (315)
363 cd03414 CbiX_SirB_C Sirohydroc 20.6 3E+02 0.0065 24.3 6.3 58 322-383 16-73 (117)
364 PRK00366 ispG 4-hydroxy-3-meth 20.5 1.2E+03 0.025 25.8 13.9 140 213-367 38-199 (360)
365 TIGR00262 trpA tryptophan synt 20.3 9.6E+02 0.021 24.7 11.5 23 313-335 62-84 (256)
366 PRK13586 1-(5-phosphoribosyl)- 20.2 9.2E+02 0.02 24.5 11.4 135 218-383 31-173 (232)
367 PF06968 BATS: Biotin and Thia 20.0 1.2E+02 0.0027 26.2 3.5 24 374-397 2-25 (93)
No 1
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=100.00 E-value=3e-95 Score=745.13 Aligned_cols=475 Identities=63% Similarity=1.031 Sum_probs=447.9
Q ss_pred CCchhhhhhcCCCCCCCCCCCCCCCcceeccccCCCCCCc-cCCcCccCCCCCCCCCCccEEEEEecccccchhHHHHHH
Q 007001 1 MEDIEDLLAGSGGGGAPPGFRLPINAVGVNPKYNKNKPRL-HDNHLSKTGSLSPKIPGTETIYMKTFGCSHNQSDSEYMA 79 (622)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~i~TlGC~~N~~Dse~m~ 79 (622)
||||||++ +++|++|++|++.+.+ |.||.+|+...+ .+.+. +..+.+|.|||+++|||+||||++|++|||+|+
T Consensus 1 ~ddiedl~---s~~d~kp~~r~~~~k~-v~pk~~kr~~~k~~q~ee-~~~ps~s~ipgtqki~iktwgcshnnsdseyma 75 (547)
T KOG4355|consen 1 MDDIEDLL---SGGDAKPGFRLPLNKV-VNPKTNKRISSKPDQIEE-SNRPSSSKIPGTQKIYIKTWGCSHNNSDSEYMA 75 (547)
T ss_pred CccHHHHh---hCCCCCCccccccccc-cccccccccccCchhhhh-cCCCccccCCCccEEEEEeecccCCCchhHHHh
Confidence 79999999 6789999999997665 889887654322 22222 223558999999999999999999999999999
Q ss_pred HHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCCCcEEEEccccccchhhhcccccEEEcCCchHHHH
Q 007001 80 GQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGVQQIDRVV 152 (622)
Q Consensus 80 ~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~~~~~d~VvG~~~~~~l~ 152 (622)
|+|.+.||.+++ +++||+|++|| +.++++.|.+.++.++++|++||++|..|++..+.+.+|||.+++++++
T Consensus 76 gqlaaygy~lte-~eeadlwllnsctvknpsed~frn~i~~g~~~~k~~viagcvpqg~p~~dyl~glsvigvqqidrvv 154 (547)
T KOG4355|consen 76 GQLAAYGYALTE-PEEADLWLLNSCTVKNPSEDAFRNLITRGRSGKKPLVIAGCVPQGSPDLDYLEGLSVIGVQQIDRVV 154 (547)
T ss_pred hhHHhhhhccCC-cccccEEEecccccCCchHHHHHHHHHhhhcCCCceEEEecCCCCCcchhhhcCceEeehhhhhHHH
Confidence 999999999998 99999999999 8899999999998889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEeeccCCCCCCCCccccCCccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCc
Q 007001 153 EVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK 232 (622)
Q Consensus 153 ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~Gvk 232 (622)
|++++.++|+.++++.+...+++++|+.|+++...+|.|+.||.+.|+||...++||..-|+|++++++.++...+.|+.
T Consensus 155 evveetlkghsvrll~rr~~galdlpkvrknplieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~ 234 (547)
T KOG4355|consen 155 EVVEETLKGHSVRLLTRRTLGALDLPKVRKNPLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVC 234 (547)
T ss_pred HHHHHHhccceEeeeecccccccCchhhccCCceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcE
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHH
Q 007001 233 EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 312 (622)
Q Consensus 233 eI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~v 312 (622)
+||+++.|+++||+|.+.+++.||.++.+.+| ..+++|+++++|+++.+++++++..+++++++.++|+|+|||||.+
T Consensus 235 eIwltsedTgaygrdig~slp~ll~klv~~iP--e~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsv 312 (547)
T KOG4355|consen 235 EIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIP--ESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSV 312 (547)
T ss_pred EEEecccccchhhhhhhhhhHHHHHHHHHhcc--hhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhH
Confidence 99999999999999999999999999999998 7799999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCC
Q 007001 313 LSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 392 (622)
Q Consensus 313 Lk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~ 392 (622)
|..|+|.|+..++..+++.+++.+|||.|.||+|+||||||+|||++|++++++++|..++|++|+|+||||+++|+++|
T Consensus 313 l~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPRpGTPAAkmkki~ 392 (547)
T KOG4355|consen 313 LTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPRPGTPAAKMKKIP 392 (547)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhCCCcEEeeeeeecCCCCchHHHHHHHHHHHHccCchhhhhhcCCCCCChHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEE
Q 007001 393 SAVVKKRSRELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFG 472 (622)
Q Consensus 393 ~~~~k~R~~~L~~l~~~~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G 472 (622)
..++++|.+.|.+++++|..|..++|....|||++.+.|+.+++||++.|.+|+++.+...+|+++.|+||++++++|+|
T Consensus 393 a~~vkkRTk~ls~lF~sy~pYtd~ige~~rVlVTEva~Dklh~VgHnksYeQVLvp~~~~~mGt~vevrItsvgkfsm~g 472 (547)
T KOG4355|consen 393 AVEVKKRTKALSELFRSYTPYTDEIGELHRVLVTEVAADKLHYVGHNKSYEQVLVPLEYCKMGTWVEVRITSVGKFSMIG 472 (547)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccccccEEEEEEEEeeccceeeeccccceeEEEeecchhhccceEEEEEEeeeeeeeec
Confidence 99999999999999999999999999999999999998888999999999999999888899999999999999999999
Q ss_pred EEEeecccccc
Q 007001 473 EVIKILNQVDD 483 (622)
Q Consensus 473 ~~v~~~~~~~~ 483 (622)
++++..+.+..
T Consensus 473 ep~s~~~d~~p 483 (547)
T KOG4355|consen 473 EPASDQEDQTP 483 (547)
T ss_pred cccchhhhcCc
Confidence 99987555443
No 2
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-88 Score=732.17 Aligned_cols=412 Identities=35% Similarity=0.617 Sum_probs=364.1
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCC-eeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCC--CcEEEEccc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGY-ALTDNSEEADIWLINT-------QSAMDTLIAKCKSAK--KPLVVAGCV 127 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~-~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~--~~VVVgGC~ 127 (622)
|+||||+||||+||++|||.|++.|.+.|| +.++++++||+||||| ++++.+.++++++.+ .+|+|+||+
T Consensus 2 ~~kv~i~T~GC~~N~~DSe~m~~~L~~~G~~~~~~~~~eADvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~~iiVtGC~ 81 (437)
T COG0621 2 MKKVYIETLGCQMNLYDSERMAGLLEAAGYEELVEDPEEADVVIINTCAVREKAEQKVRSAIGELKKLKPDAKIIVTGCL 81 (437)
T ss_pred CceEEEEecCCCccHHHHHHHHHHHHHcCCccccCCcccCCEEEEecCeeeehHHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 689999999999999999999999999999 6999999999999999 556666677776665 479999999
Q ss_pred cccchhh-hccc-ccEEEcCCchHHHHHHHHHHhcCCceE--eeccCCCCC-CCCccccCCccEEEEEeCCCCCCCCCCc
Q 007001 128 PQGSRDL-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPA-LDLPKVRRNKFVEILPINVGCLGACTYC 202 (622)
Q Consensus 128 aq~~pe~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~--~~~~~~~~~-~~lp~~r~~~~~a~I~isrGC~~~CsFC 202 (622)
||..+++ ..++ +|.|+|++.+++++++|++...+.... ..+..+... ..+|..+....+|||+|+.||+++||||
T Consensus 82 aq~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~v~I~eGCn~~CtfC 161 (437)
T COG0621 82 AQAEEEILERAPEVDIVLGPQNKERLPEAIEKALRGKKEFVVVLSFPEEEKFDKLPPRREGGVRAFVKIQEGCNKFCTFC 161 (437)
T ss_pred cccCHHHHhhCCCceEEECCccHHHHHHHHHHHhhcccccccccccccccccccCCCCcCCCeEEEEEhhcCcCCCCCee
Confidence 9999664 5665 678999999999999999886543322 111111111 1122225667899999999999999999
Q ss_pred ccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCceeEEEeecCCc
Q 007001 203 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPP 279 (622)
Q Consensus 203 ~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~ 279 (622)
++|++||+.||||+++|++|++.|++.|++||+|+|||+++||.|.+ .+|.+||+.|.+ ++ ++.|+|++|++|.
T Consensus 162 iiP~~RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~--G~~riR~~~~~P~ 238 (437)
T COG0621 162 IIPYARGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IP--GIERIRFGSSHPL 238 (437)
T ss_pred eeeccCCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CC--CceEEEEecCCch
Confidence 99999999999999999999999999999999999999999999985 789999999987 66 8999999999999
Q ss_pred chhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHH
Q 007001 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 359 (622)
Q Consensus 280 ~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~e 359 (622)
.+++.+ +..+...+++|+|||||+|||||+|||+|+|+||.++|++.++++|+++|++.++|||||||||||+|||++
T Consensus 239 ~~~d~l--I~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~ 316 (437)
T COG0621 239 EFTDDL--IEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEE 316 (437)
T ss_pred hcCHHH--HHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHH
Confidence 888766 555556689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEE-ecCCceE
Q 007001 360 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI-AADGIHL 435 (622)
Q Consensus 360 Tl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~-~~~~~~~ 435 (622)
|++|+++.+|+++|+|+|||+||||++.|+ |+|++++++|+++|+++++. .+++++++|++++||||+. ++++ .+
T Consensus 317 tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~vG~~~~VLVe~~~~~~~-~~ 395 (437)
T COG0621 317 TLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQKLVGKTLEVLVEEGGSKKG-EL 395 (437)
T ss_pred HHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcCC-ce
Confidence 999999999999999999999999999887 99999999999999999985 5788999999999999963 2334 68
Q ss_pred EEeecCCeEEEECCCCC-CCCCEEEEEEEEEeeceEEEEEE
Q 007001 436 VGHTKGYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 436 ~Grt~~y~~V~v~~~~~-~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
.|||.+|.+|.+.+... .+|++++|+|+++..++|.|+++
T Consensus 396 ~Grt~~~~~v~~~~~~~~~~G~~v~VkIt~~~~~~L~g~~v 436 (437)
T COG0621 396 IGRTENYRPVVFGGVYTEDIGEFVEVKITEADEYSLIGEVV 436 (437)
T ss_pred EEEcCCCCEEEecCcccCCCCCEEEEEEEecCCCceEEEec
Confidence 99999999999986422 37999999999999999999986
No 3
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.5e-77 Score=658.68 Aligned_cols=417 Identities=27% Similarity=0.447 Sum_probs=354.9
Q ss_pred CCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHH---HHhcCCC--cEEE
Q 007001 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA---KCKSAKK--PLVV 123 (622)
Q Consensus 56 ~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~---~~k~~~~--~VVV 123 (622)
|++++|||+||||++|++|||.|.+.|.+.||++++++++||+||||| ++++++.++ ++|+.++ +|||
T Consensus 4 ~~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv 83 (445)
T PRK14340 4 RMGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGV 83 (445)
T ss_pred CCCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 455789999999999999999999999999999999999999999999 555666544 4555554 5999
Q ss_pred Eccccccchh-hh-ccc-ccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCC-CCccccCCccEEEEEeCCCCCCCC
Q 007001 124 AGCVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 199 (622)
Q Consensus 124 gGC~aq~~pe-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~-~lp~~r~~~~~a~I~isrGC~~~C 199 (622)
||||||.+++ +. .++ +|.|+|++++..|++++.+...+.....+...+.+.+ .+|..+.....+||++|||||++|
T Consensus 84 ~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~isrGC~~~C 163 (445)
T PRK14340 84 LGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADAREGARPAALDFNQSETYAGIEPVRSGSISAFVPVMRGCNNMC 163 (445)
T ss_pred eCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 9999999986 43 454 6789999999999999987655432222211111111 122222345679999999999999
Q ss_pred CCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHHHHHhCCCCCceeEEEeecCC
Q 007001 200 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNAIVAELPPDGSTMLRIGMTNP 278 (622)
Q Consensus 200 sFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~l~~~l~~~~~~~iri~~~~p 278 (622)
+||.+|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.|+.+. ..+|.+||+.+.+. . +..++|+++.+|
T Consensus 164 sFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~-~--~~~rir~~~~~p 240 (445)
T PRK14340 164 AFCVVPFTRGRERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRA-A--PEMRIRFTTSHP 240 (445)
T ss_pred CCCCcccccCCCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhc-C--CCcEEEEccCCh
Confidence 9999999999999999999999999999999999999999999998664 34689999998753 2 456999999999
Q ss_pred cchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHH
Q 007001 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFN 358 (622)
Q Consensus 279 ~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~ 358 (622)
..+++++ +..+.+.+.+|+++|||+||+|+++|+.|||+|+.+++.++++++++.+||+.+.+|||+||||||++||+
T Consensus 241 ~~l~~el--l~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET~edf~ 318 (445)
T PRK14340 241 KDISESL--VRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGETEEDHR 318 (445)
T ss_pred hhcCHHH--HHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccEEEECCCCCHHHHH
Confidence 9887655 44444555679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCC-c
Q 007001 359 QTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-I 433 (622)
Q Consensus 359 eTl~fl~el~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~-~ 433 (622)
+|++|+++++++.+++|.|+|+||||+++ |+ ++|++++++|.++|+++++. .+++++++|++++||||+.++++ +
T Consensus 319 ~tl~~~~~~~~~~~~~f~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~l~~~~~~~~~~~~vG~~~~vlve~~~~~~~~ 398 (445)
T PRK14340 319 ATLSLMEEVRFDSAFMFYYSVRPGTLAARTLPDDVPEEVKKRRLQEIIDLQNGISAELFQRAVGSVVEVLAESESRRSSE 398 (445)
T ss_pred HHHHHHHhcCCCEEeeEEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCC
Confidence 99999999999999999999999999995 87 89999999999999999986 57889999999999999754332 3
Q ss_pred eEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEee
Q 007001 434 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 477 (622)
Q Consensus 434 ~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~ 477 (622)
.++|||++|.+|++++....+|++++|+|+++.+++|.|+++..
T Consensus 399 ~~~grt~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 442 (445)
T PRK14340 399 QLMGRTDGNRVVVFDRGGFQPGDLVRVRITGSTSATLSGEPAGN 442 (445)
T ss_pred eEEEECCCCeEEEECCCCCCCCCEEEEEEEecccccEEEEEccC
Confidence 67899999999999754445899999999999999999998754
No 4
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.6e-77 Score=661.74 Aligned_cols=415 Identities=32% Similarity=0.522 Sum_probs=357.8
Q ss_pred CCCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHH---HHHhcCCC--cEE
Q 007001 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI---AKCKSAKK--PLV 122 (622)
Q Consensus 55 ~~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii---~~~k~~~~--~VV 122 (622)
++.+++|||+||||+||++|||.|++.|.+.||+.++++++||+||||| +++++..+ +++|+.++ +|+
T Consensus 63 ~~~~~~~~i~T~GC~~N~~Dse~~~~~L~~~Gy~~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~ 142 (509)
T PRK14327 63 MGNGRKFYIRTYGCQMNEHDTEVMAGIFEALGYEPTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIG 142 (509)
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHCcCEECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEE
Confidence 5567899999999999999999999999999999999999999999999 44445444 55566554 589
Q ss_pred EEccccccch---hh-hccc-ccEEEcCCchHHHHHHHHHHhcCCceE--eeccCCCCCC-CCccccCCccEEEEEeCCC
Q 007001 123 VAGCVPQGSR---DL-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVR--LLHRKKLPAL-DLPKVRRNKFVEILPINVG 194 (622)
Q Consensus 123 VgGC~aq~~p---e~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~--~~~~~~~~~~-~lp~~r~~~~~a~I~isrG 194 (622)
|+|||||..+ ++ ..++ +|.|+|+.++..+++++.....+.... ..... .... ++|..+.....++|+|++|
T Consensus 143 v~GCmaq~~~~~~~~~~~~p~vd~v~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~a~v~I~~G 221 (509)
T PRK14327 143 VCGCMSQEESVVNKILKKYQHVDMIFGTHNIHRLPEILKEAYFSKEMVVEVWSKE-GDVIENLPKVREGNIKAWVNIMYG 221 (509)
T ss_pred EEcchhcCcCchHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCCceeeccccc-cccccccccccCCCeEEEEEecCC
Confidence 9999999988 44 4564 688999999999999998766443211 11110 0111 2454444567899999999
Q ss_pred CCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCceeE
Q 007001 195 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTML 271 (622)
Q Consensus 195 C~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~l~~~l~~~~~~~i 271 (622)
||++|+||++|+.+|++|++++++|++|++.+.+.|+++|+|+|+|++.||.+.. ..|.+||+.|.+ + +..|+
T Consensus 222 C~~~CsFC~vp~~rG~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~-~---~i~~i 297 (509)
T PRK14327 222 CDKFCTYCIVPYTRGKERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRK-I---DIPRV 297 (509)
T ss_pred CCCCCcCCcccccCCCCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHh-C---CCceE
Confidence 9999999999999999999999999999999999999999999999999997642 357899998875 3 46789
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 007001 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351 (622)
Q Consensus 272 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG 351 (622)
|+.+.+|..+++.+ +..+.+.+.+|+++|||+||||+++|+.|+|+|+.+++.++++.+++++|++.+++|||+||||
T Consensus 298 r~~s~~P~~i~del--i~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGfPg 375 (509)
T PRK14327 298 RFTTSHPRDFDDHL--IEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGFPN 375 (509)
T ss_pred EEeecCcccCCHHH--HHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeCCC
Confidence 99989999888765 4445556667899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEE
Q 007001 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 428 (622)
Q Consensus 352 ETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~ 428 (622)
||++||++|++|+++++++.+++|+|+|+||||+++|+ ++|++++++|+++|.++++. .+.+++++|++++||||+.
T Consensus 376 ET~edf~~Tl~~v~~l~~d~~~~f~ysprpGT~a~~~~~~vp~~vk~~R~~~l~~l~~~~~~~~~~~~~G~~~~VLve~~ 455 (509)
T PRK14327 376 ETDEQFEETLSLYREVGFDHAYTFIYSPREGTPAAKMKDNVPMEVKKERLQRLNALVNEYSAKKMKRYEGQTVEVLVEGE 455 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeeeeCCCCCchHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999998 89999999999999999996 4688999999999999986
Q ss_pred ecC-CceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEe
Q 007001 429 AAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476 (622)
Q Consensus 429 ~~~-~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~ 476 (622)
++. ++.+.|||.+|.+|+|+++...+|++|+|+|+++..++|.|++++
T Consensus 456 ~~~~~~~~~Grt~~~~~V~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~~ 504 (509)
T PRK14327 456 SKKNPEVLAGYTRKNKLVNFKGPKSLIGQLVKVKITEAKTWSLNGELVE 504 (509)
T ss_pred ccCCCceEEEECCCCcEEEECCCCCCCCCEEEEEEEeeecceEEEEEec
Confidence 543 236789999999999986555689999999999999999999987
No 5
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.1e-76 Score=652.28 Aligned_cols=412 Identities=25% Similarity=0.444 Sum_probs=349.9
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHH---HHHHhcCC--CcEEEEc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTL---IAKCKSAK--KPLVVAG 125 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~i---i~~~k~~~--~~VVVgG 125 (622)
+++|||+||||+||++|||.|.+.|.+.||++++++++||+|+||| ++++.+. ++++|+.+ .+|||||
T Consensus 10 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADvviiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~G 89 (449)
T PRK14332 10 LGKVYIETYGCQMNEYDSGIVSSLMRDAEYSTSNDPENSDIIFLNTCAIRENAHAKIYNRLQSLGYLKKRNPNLVIGVLG 89 (449)
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccCeechHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5689999999999999999999999999999999999999999999 3333332 33445543 4699999
Q ss_pred cccccchh-h-h-cccccEEEcCCchHHHHHHHHHHhcCCceEeecc-CCCCCC-CCccccCCccEEEEEeCCCCCCCCC
Q 007001 126 CVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR-KKLPAL-DLPKVRRNKFVEILPINVGCLGACT 200 (622)
Q Consensus 126 C~aq~~pe-~-~-~~~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~-~~~~~~-~lp~~r~~~~~a~I~isrGC~~~Cs 200 (622)
||||.+++ + . ..++|.|+|++++..++++++....|........ .....+ ++|......+.+||+|+||||++|+
T Consensus 90 C~a~~~~e~l~~~~~~vD~vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~l~isrGC~~~Cs 169 (449)
T PRK14332 90 CMAQNLGDDLFHQELPLDLVVGPDNYRSLPELIQRIRNGEKSISLTRLSKIETYDEIEPRVVNGIQAFVTIMRGCNNFCT 169 (449)
T ss_pred cccccchHHHhhccCCceEEECCCCHHHHHHHHHHHhcCCceeeecccccccccccccccccCCceEEEEecCCcCCCCC
Confidence 99999996 3 2 3467899999999999999988765543211111 000111 1222222346799999999999999
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcc
Q 007001 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280 (622)
Q Consensus 201 FC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~ 280 (622)
||.+|+.+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ..|.+||+++.+ .. +..|+|+++.+|..
T Consensus 170 FC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~-~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 245 (449)
T PRK14332 170 FCVVPYTRGRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQS-TDFAGLIQMLLD-ET--TIERIRFTSPHPKD 245 (449)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCc-ccHHHHHHHHhc-CC--CcceEEEECCCccc
Confidence 999999999999999999999999999999999999999999998753 468999998865 33 67899999999998
Q ss_pred hhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH
Q 007001 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360 (622)
Q Consensus 281 i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eT 360 (622)
+++++ +..+.+.+++|+++|+|+||+|+++|++|||+|+.+++.++++.+++++|++.+.+|||+||||||++||++|
T Consensus 246 ~~~el--l~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~IvGfPgET~edf~~t 323 (449)
T PRK14332 246 FPDHL--LSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDIIVGFPNETEEEFEDT 323 (449)
T ss_pred CCHHH--HHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEeeCCCCCHHHHHHH
Confidence 87755 4444456678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEEeeeCCCCccc-cCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCC-ceE
Q 007001 361 VNLIKEYKFPQVHISQFYPRPGTPAA-RMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG-IHL 435 (622)
Q Consensus 361 l~fl~el~~d~v~i~~ysP~PGTpa~-~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~-~~~ 435 (622)
++|+++++++++++|.|||+||||++ .|+ ++|++++++|+++|+++++. .+++++++|++++||||+.++++ ..+
T Consensus 324 l~~v~~l~~~~~~~f~ys~~~GT~a~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~~~~ 403 (449)
T PRK14332 324 LAVVREVQFDMAFMFKYSEREGTMAKRKLPDNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSRKSEKQL 403 (449)
T ss_pred HHHHHhCCCCEEEEEEecCCCCChhHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccCCCCCeE
Confidence 99999999999999999999999999 687 89999999999999999996 57899999999999999865432 368
Q ss_pred EEeecCCeEEEECCC-----CCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 436 VGHTKGYVQVLVPST-----GNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 436 ~Grt~~y~~V~v~~~-----~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
+||+++|.+|+|+.+ ...+|++|+|+|++++.++|.|+++
T Consensus 404 ~gr~~~~~~v~~~~~~~~~~~~~~G~~v~v~I~~~~~~~l~g~~~ 448 (449)
T PRK14332 404 CGRTPCGRMTVFPLPEGQDLSDMIGSTVSVLIESATSATLKGKIL 448 (449)
T ss_pred EEECCCCeEEEEecCCCcccccCCCCEEEEEEEecccCcEEEEEe
Confidence 899999999988732 1247999999999999999999976
No 6
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1e-75 Score=643.60 Aligned_cols=412 Identities=31% Similarity=0.524 Sum_probs=354.7
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHH----hcCCCcEEEEcccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC----KSAKKPLVVAGCVP 128 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~----k~~~~~VVVgGC~a 128 (622)
+|||+||||++|++|||.|.+.|.+.||+.++++++||+|+||| ++++.++++++ |+++++||||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~~~~vvv~Gc~a 81 (434)
T PRK14330 2 KFYIKTFGCQMNENDSETMAGLLKKEGFEPASNPEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKKNLIIGVAGCVA 81 (434)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEccceeehHHHHHHHHHHHHHHhcccCCCEEEEECccc
Confidence 79999999999999999999999999999999999999999999 55666777777 55678899999999
Q ss_pred ccchh-hhcccccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCC--CCccccCCccEEEEEeCCCCCCCCCCcccC
Q 007001 129 QGSRD-LKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL--DLPKVRRNKFVEILPINVGCLGACTYCKTK 205 (622)
Q Consensus 129 q~~pe-~~~~~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~--~lp~~r~~~~~a~I~isrGC~~~CsFC~ip 205 (622)
|..|+ +.+..+|.|+|+.++..|+++|++...|.....+. ...+.. ..|..+....+++|+|+||||++|+||.+|
T Consensus 82 ~~~~ee~~~~~~d~vvg~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~CsFC~ip 160 (434)
T PRK14330 82 EKEREKLLKRGADFVIGTRAVPKVTEAVKRALNGEKVALFE-DKLDEITYELPRIRSSKHHAWVTIIYGCNRFCTYCIVP 160 (434)
T ss_pred cCchhhHHhcCCcEEEcCCCHHHHHHHHHHHhcCCceEeec-ccccccccccccccCCCcEEEEEcccCCCCCCCCCceE
Confidence 99996 44555678999999999999999887665322111 111111 112222234678999999999999999999
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH
Q 007001 206 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283 (622)
Q Consensus 206 ~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~ 283 (622)
..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.+. ...+.+||+.+.+ ++ +..++++.+.+|..+++
T Consensus 161 ~~~G~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~-~~--~~~~~~~~~~~p~~~~~ 237 (434)
T PRK14330 161 YTRGREKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASK-IE--GIERIWFLTSYPTDFSD 237 (434)
T ss_pred CcCCCCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHh-cC--CceEEEEecCChhhcCH
Confidence 9999999999999999999999999999999999999998764 2568999988765 44 56778888889988776
Q ss_pred HHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Q 007001 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 363 (622)
Q Consensus 284 ~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~f 363 (622)
.+ +..+.+.+.+|+++|||+||+|+++|+.|||+|+.+++.++++.+++++||+.+.+|||+||||||+++|++|++|
T Consensus 238 el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvGfPgET~edf~~tl~f 315 (434)
T PRK14330 238 EL--IEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSDIIVGFPTETEEDFMETVDL 315 (434)
T ss_pred HH--HHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHH
Confidence 54 3334445567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCceEEEee
Q 007001 364 IKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHT 439 (622)
Q Consensus 364 l~el~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt 439 (622)
+++++++++++|.|+|+||||+++ ++ ++|++++++|+++|+++++. .+++++++|++++||||+..+++ .+.|||
T Consensus 316 i~~~~~~~~~~~~~sp~pGT~~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~-~~~g~t 394 (434)
T PRK14330 316 VEKAQFERLNLAIYSPREGTVAWKYYKDDVPYEEKVRRMQYLLNLQKRINRKLNERYLGKTVEIIVEAKAKNG-LFYGRD 394 (434)
T ss_pred HHhcCCCEEeeeeccCCCCChhhhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEccCCC-eEEEEC
Confidence 999999999999999999999999 66 89999999999999999996 57889999999999999754444 688999
Q ss_pred cCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeec
Q 007001 440 KGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKIL 478 (622)
Q Consensus 440 ~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~ 478 (622)
.+|.+|+++++...+|++++|+|+++.+++|.|+++..+
T Consensus 395 ~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~~ 433 (434)
T PRK14330 395 IRNKIIAFEGEEELIGRFADVKIEKITAGPLYGKVVKIL 433 (434)
T ss_pred CCCEEEEECCCCCCCCCEEEEEEEEeecCeEEEEEEEec
Confidence 999999997544458999999999999999999988754
No 7
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-75 Score=646.91 Aligned_cols=418 Identities=28% Similarity=0.449 Sum_probs=353.6
Q ss_pred CCCCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHH---HHHhcCC--CcE
Q 007001 54 KIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI---AKCKSAK--KPL 121 (622)
Q Consensus 54 ~~~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii---~~~k~~~--~~V 121 (622)
-.||+++|||+||||++|++|||.|++.|.+.||++++++++||+|+||| ++++++.+ +++|+.+ .+|
T Consensus 19 ~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~i 98 (467)
T PRK14329 19 KPKNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIV 98 (467)
T ss_pred cCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 35788999999999999999999999999999999999999999999999 45556656 5556654 469
Q ss_pred EEEccccccchh-h-hccc-ccEEEcCCchHHHHHHHHHHhcCCceEeec---cCCCCCCCCccccCCccEEEEEeCCCC
Q 007001 122 VVAGCVPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLH---RKKLPALDLPKVRRNKFVEILPINVGC 195 (622)
Q Consensus 122 VVgGC~aq~~pe-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~---~~~~~~~~lp~~r~~~~~a~I~isrGC 195 (622)
|||||||+.+|+ + ...+ +|.|+|++++..|+++++....+....... ...+.....++......+++|++||||
T Consensus 99 vvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~isrGC 178 (467)
T PRK14329 99 GVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEEGRKAINVILSKEETYADISPVRLGGNGVSAFVSIMRGC 178 (467)
T ss_pred EEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHhcCCcceeccccccccccccccccccCCCcEEEEEeccCc
Confidence 999999999986 4 3445 789999999999999998866553221110 011111111111123567999999999
Q ss_pred CCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-------CCHHHHHHHHHHhCCCCCc
Q 007001 196 LGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-------VNLPILLNAIVAELPPDGS 268 (622)
Q Consensus 196 ~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-------~~l~eLL~~l~~~l~~~~~ 268 (622)
|++|+||++|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.|+.+.. ..|.+||+.+.+.. +.
T Consensus 179 p~~CsFC~ip~~~G~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~---~~ 255 (467)
T PRK14329 179 DNMCTFCVVPFTRGRERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAV---PD 255 (467)
T ss_pred ccCCCCCccccccCCcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcC---CC
Confidence 999999999999999999999999999999999999999999999999986532 36889999887643 34
Q ss_pred eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 007001 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348 (622)
Q Consensus 269 ~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvG 348 (622)
.++|+++.+|..+++.+ +..|.+.+++|++||||+||+|+++|+.|||+++.+++.++++.++++.|++.+.+|||+|
T Consensus 256 ~~ir~~~~~p~~l~~el--l~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvG 333 (467)
T PRK14329 256 MRIRFSTSHPKDMTDDV--LEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAG 333 (467)
T ss_pred cEEEEecCCcccCCHHH--HHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEe
Confidence 68999989999887654 4444445557999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEE
Q 007001 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIW 424 (622)
Q Consensus 349 fPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vl 424 (622)
|||||++||++|++|+++++++.+++|+|+|+||||+++ |+ ++|.+++++|.++|+++++. .+++++++|++++||
T Consensus 334 fPgET~edf~~tl~~i~~l~~~~~~v~~~sp~pGT~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vl 413 (467)
T PRK14329 334 FPTETEEDHQDTLSLMEEVGYDFAFMFKYSERPGTYAARKLEDDVPEEVKKRRLNEIIALQQELSLERNQRDIGKTFEVL 413 (467)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCeEeeeEecCCCCChhhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999999999999999999999999999999999995 77 89999999999999999985 578899999999999
Q ss_pred EEEEecC-CceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEe
Q 007001 425 ITEIAAD-GIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476 (622)
Q Consensus 425 ve~~~~~-~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~ 476 (622)
||+..++ ++.+.|||++|.+|+++++....|++++|+|+++.+++|.|+++.
T Consensus 414 ve~~~~~~~~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 466 (467)
T PRK14329 414 IEGVSKRSREQLFGRNSQNKVVVFPKENYKIGDFVNVRITDCTSATLLGEAVG 466 (467)
T ss_pred EEecccCCCCeEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEec
Confidence 9975433 236789999999999975444589999999999999999999864
No 8
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.2e-75 Score=643.71 Aligned_cols=416 Identities=25% Similarity=0.455 Sum_probs=346.2
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHH---HHHHHhcC-CCcEEEEcccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDT---LIAKCKSA-KKPLVVAGCVP 128 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~---ii~~~k~~-~~~VVVgGC~a 128 (622)
+|||+||||+||++|||.|++.|.+.||++++++++||+||||| ++++.. .++++|+. +.+||||||||
T Consensus 2 ~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv~GC~a 81 (455)
T PRK14335 2 TYFFETYGCQMNVAESASMEQLLLARGWTKAVDAETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIILMGCMA 81 (455)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEEecccc
Confidence 89999999999999999999999999999999999999999999 333322 22333332 35699999999
Q ss_pred ccchh-h-hcc-cccEEEcCCchHHHHHHHHHHhcC---CceEe------eccCCCCCCCC-cc-ccCCccEEEEEeCCC
Q 007001 129 QGSRD-L-KEL-EGVSIVGVQQIDRVVEVVEETLKG---HEVRL------LHRKKLPALDL-PK-VRRNKFVEILPINVG 194 (622)
Q Consensus 129 q~~pe-~-~~~-~~d~VvG~~~~~~l~ell~~~~~g---~~~~~------~~~~~~~~~~l-p~-~r~~~~~a~I~isrG 194 (622)
|.+++ + ..+ ++|.|+|++++..|++++++...+ ..... ++..++|...+ |. ++.....+||+|+||
T Consensus 82 ~~~~~e~~~~~p~vd~v~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~I~rG 161 (455)
T PRK14335 82 ERLHDEIQKEFPRIDYVVGTFAHARLESIFQEIEAKLKQDDYRFEFISERYREHPVSGYRFFPSSYSEGSFQSFIPIMNG 161 (455)
T ss_pred cchHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhhcccccceecccccccccccccccccCcccccCCCceEEEEhhcC
Confidence 99986 4 445 468899999999999998765321 11001 01111222211 21 112356799999999
Q ss_pred CCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc----CCCHHHHHHHHHHhCC-CCCce
Q 007001 195 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----GVNLPILLNAIVAELP-PDGST 269 (622)
Q Consensus 195 C~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~----~~~l~eLL~~l~~~l~-~~~~~ 269 (622)
||++|+||.+|..+|+.|+||+++|++|++.+.+.|+++|+|+|+|++.|+.+. ...+.+||++|.+... ..+..
T Consensus 162 C~~~CsfC~~p~~rG~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 241 (455)
T PRK14335 162 CNNFCSYCIVPYVRGREISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIR 241 (455)
T ss_pred CCCCCCCCCcccCCCCCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCce
Confidence 999999999999999999999999999999999999999999999999996421 1368999999853211 11578
Q ss_pred eEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 007001 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349 (622)
Q Consensus 270 ~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGf 349 (622)
|+|+.+++|..+++.+ +..|.+.+.+|+++|||+||+|+++|+.|||+|+.+++.++++.+++++||+.+.+|||+||
T Consensus 242 ~ir~~s~~p~~i~~el--l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi~i~~d~IvGf 319 (455)
T PRK14335 242 WIRFMSSHPKDLSDDL--IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNVALSTDILIGF 319 (455)
T ss_pred EEEEeecCcccCCHHH--HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEeC
Confidence 9999999999888755 44444555679999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEE
Q 007001 350 PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWIT 426 (622)
Q Consensus 350 PGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve 426 (622)
||||++||++|++|+++++++.+++|+|+|+||||+|+|+ ++|++++++|+++|+++++. .+++++++|++.+||||
T Consensus 320 PgET~edf~~Tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve 399 (455)
T PRK14335 320 PGETEEDFEQTLDLMREVEFDSAFMYHYNPREGTPAYDFPDRIPDEVKIARLQRVIALQMSITLKKMKARVGKTLPVLVE 399 (455)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 9999999999999999999999999999999999999998 89999999999999999996 57889999999999999
Q ss_pred EEecCC-ceEEEeecCCeEEEECCC--CCCCCCEEEEEEEEEeeceEEEEEEee
Q 007001 427 EIAADG-IHLVGHTKGYVQVLVPST--GNMLGTSALVKITSVGRWSVFGEVIKI 477 (622)
Q Consensus 427 ~~~~~~-~~~~Grt~~y~~V~v~~~--~~~~G~~v~V~I~~~~~~~l~G~~v~~ 477 (622)
+.++++ +.++|||++|.+|+++++ ...+|++++|+|+++.+++|.|+++..
T Consensus 400 ~~~~~~~~~~~g~t~~~~~v~~~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~ 453 (455)
T PRK14335 400 SRSRNNPEELFGHTELGEMTVLEGKVDETLIGRFVDVQLKELRGRTFRAHLVQE 453 (455)
T ss_pred ccccCCCCeeEEECCCCeEEEEcCCcccCCCCCEEEEEEEEcccCeEEEEEecC
Confidence 753332 368899999999999753 234799999999999999999998753
No 9
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.9e-74 Score=633.88 Aligned_cols=412 Identities=34% Similarity=0.576 Sum_probs=352.2
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHH---HHHhcCC--CcEEEEccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI---AKCKSAK--KPLVVAGCV 127 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii---~~~k~~~--~~VVVgGC~ 127 (622)
+|||+||||++|++|||.|++.|.+.||++++++++||+||||| +.++++.+ +++|+.+ .+|||||||
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~Gc~ 81 (437)
T PRK14331 2 KYYIKTFGCQMNFNDSEKIKGILQTLGYEPADDWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVCGCL 81 (437)
T ss_pred EEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEEcch
Confidence 79999999999999999999999999999999999999999999 44555555 5666654 469999999
Q ss_pred cccchh-h-hccc-ccEEEcCCchHHHHHHHHHHhcCCc-eEeecc--CCCCCCC-CccccCCccEEEEEeCCCCCCCCC
Q 007001 128 PQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHR--KKLPALD-LPKVRRNKFVEILPINVGCLGACT 200 (622)
Q Consensus 128 aq~~pe-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~-~~~~~~--~~~~~~~-lp~~r~~~~~a~I~isrGC~~~Cs 200 (622)
|+.+|+ + ...+ +|.|+|++++..++++++....+.. ...... ...+.++ +|..+.....++|+++||||++|+
T Consensus 82 a~~~~e~~~~~~p~vD~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ld~~p~~~~~~~~a~v~i~rGC~~~Cs 161 (437)
T PRK14331 82 AQRAGYEIVQKAPFIDIVFGTFNIHHLPELLEQAKAGNKAIEILEEIDEDENKLDEYPTVRDNKYCAYVTVMRGCDKKCT 161 (437)
T ss_pred hcCChHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccccCCCcEEEEEeccCcCCCCc
Confidence 999995 4 4554 6889999999999999987654432 111111 1111111 233333356799999999999999
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCceeEEEeecCCc
Q 007001 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPP 279 (622)
Q Consensus 201 FC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~~l~~~~~~~iri~~~~p~ 279 (622)
||.+|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++.+.+ .+ +..++++++.+|.
T Consensus 162 FC~~p~~~g~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~-~~--g~~~i~~~~~~p~ 238 (437)
T PRK14331 162 YCVVPKTRGKERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAE-ID--GVERIRFTTGHPR 238 (437)
T ss_pred cCCcccCCCCcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhc-CC--CccEEEEeccCcc
Confidence 9999999999999999999999999999999999999999999998753 478999999876 33 5678999988998
Q ss_pred chhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHH
Q 007001 280 FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQ 359 (622)
Q Consensus 280 ~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~e 359 (622)
.+++++ +..+...+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++++||+.+.+|||+||||||++||++
T Consensus 239 ~l~~el--l~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~IvG~PgET~ed~~~ 316 (437)
T PRK14331 239 DLDEDI--IKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDIIVGFPTETEEDFEE 316 (437)
T ss_pred cCCHHH--HHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCEEEECCCCCHHHHHH
Confidence 887655 444444555799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCceEE
Q 007001 360 TVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLV 436 (622)
Q Consensus 360 Tl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~ 436 (622)
|++|+++++++++++|+|+|+||||+++++ ++|++++++|.++|++++++ .+++++++|++++||||+..++ +.++
T Consensus 317 tl~~l~~l~~~~i~~f~~sp~pGT~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~-~~~~ 395 (437)
T PRK14331 317 TLDVLKKVEFEQVFSFKYSPRPGTPAAYMEGQEPDEVKTKRMNRLLELQKEITFKKALSYEGTVQEVLVEEEKEG-NKLI 395 (437)
T ss_pred HHHHHHhcCcceeeeeEecCCCCcchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCC-CcEE
Confidence 999999999999999999999999999998 89999999999999999986 5788999999999999975333 3678
Q ss_pred EeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEee
Q 007001 437 GHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 477 (622)
Q Consensus 437 Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~ 477 (622)
|||++|.+|+++++....|++++|+|+++++++|.|+++..
T Consensus 396 g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~ 436 (437)
T PRK14331 396 GRTRTNKWVSIEGSQEMLGKIVKVKIIKSNPFSLEGEILEG 436 (437)
T ss_pred EECCCCCEEEECCCCCCCCCEEEEEEEeeecccEEEEEecc
Confidence 99999999999754445899999999999999999998764
No 10
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.2e-74 Score=635.18 Aligned_cols=411 Identities=31% Similarity=0.543 Sum_probs=349.9
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHH---hcCC--CcEEEEc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC---KSAK--KPLVVAG 125 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~---k~~~--~~VVVgG 125 (622)
.++|||+||||++|++|||.|.+.|.+.||++++++++||+||||| ++++...++++ |+.+ .+|||||
T Consensus 6 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~G 85 (448)
T PRK14333 6 RRSYWITTFGCQMNKADSERMAGILEDMGYQWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAG 85 (448)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3699999999999999999999999999999999999999999999 44444444433 4433 4699999
Q ss_pred cccccchh-hh-ccc-ccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCC-CCcccc-CCccEEEEEeCCCCCCCCC
Q 007001 126 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACT 200 (622)
Q Consensus 126 C~aq~~pe-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~-~lp~~r-~~~~~a~I~isrGC~~~Cs 200 (622)
||||..|+ +. .++ +|.|+|++++..|++++++...|... +.....+.+ ++|.++ .....+||+|++|||++|+
T Consensus 86 c~a~~~~~~~~~~~p~vD~v~g~~~~~~~~~ll~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~i~i~~GC~~~Cs 163 (448)
T PRK14333 86 CVAQQEGESLLRRVPELDLVMGPQHANRLEDLLEQVDAGNQV--VATEEIHILEDITKPRRDSSITAWVNVIYGCNERCT 163 (448)
T ss_pred ccCccCHHHHHhcCCCCCEEECCCCHHHHHHHHHHHhcCCce--eecccccccccccccccCCCeeEEEEhhcCCCCCCC
Confidence 99999997 44 454 68899999999999999887655422 111111111 222221 1235789999999999999
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---------CCHHHHHHHHHHhCCCCCceeE
Q 007001 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---------VNLPILLNAIVAELPPDGSTML 271 (622)
Q Consensus 201 FC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~---------~~l~eLL~~l~~~l~~~~~~~i 271 (622)
||.+|.++|+.|++++++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..++
T Consensus 164 FC~ip~~rG~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~-~~--~~~ri 240 (448)
T PRK14333 164 YCVVPSVRGKEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHD-VE--GIERI 240 (448)
T ss_pred CCceecccCCCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHh-cC--CCeEE
Confidence 9999999999999999999999999999999999999999999987642 268999999876 44 67899
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 007001 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351 (622)
Q Consensus 272 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG 351 (622)
|+++.+|..+++.+ +..+...+.+|+++|||+||+|+++|+.|||+|+.+++.++++.+++++|++.+.+|||+||||
T Consensus 241 r~~~~~p~~~~~el--i~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfPg 318 (448)
T PRK14333 241 RFATSHPRYFTERL--IKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFPG 318 (448)
T ss_pred EECCCChhhhhHHH--HHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECCC
Confidence 99888998887755 4444455567999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEE
Q 007001 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 428 (622)
Q Consensus 352 ETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~ 428 (622)
||++||++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|.++|++++++ .+++++++|++++||||+.
T Consensus 319 ET~edf~~tl~~l~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~ 398 (448)
T PRK14333 319 ETEAQFENTLKLVEEIGFDQLNTAAYSPRPGTPAALWDNQLSEEVKSDRLQRLNHLVEQKAAERSQRYLGRIEEVLVEGI 398 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEeeeeeecCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999997 89999999999999999985 5788999999999999975
Q ss_pred ecC-CceEEEeecCCeEEEECCC-CCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 429 AAD-GIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 429 ~~~-~~~~~Grt~~y~~V~v~~~-~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
+++ ++.++|||++|.+|+|.++ ....|++++|+|++++.++|.|+++
T Consensus 399 ~~~~~~~~~g~t~~~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 447 (448)
T PRK14333 399 NPKDPSQVMGRTRTNRLTFFEGDINQLKGDLVKVKITEVRAFSLTGEPL 447 (448)
T ss_pred ccCCCceEEEECCCCcEEEEcCCCcCCCCCEEEEEEEeeecceEEEEEc
Confidence 333 2368899999999999754 3357999999999999999999875
No 11
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=4.7e-74 Score=638.91 Aligned_cols=418 Identities=29% Similarity=0.485 Sum_probs=352.8
Q ss_pred CCCCCCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHH---HHHHHHhcC--CC
Q 007001 52 SPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMD---TLIAKCKSA--KK 119 (622)
Q Consensus 52 ~~~~~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~---~ii~~~k~~--~~ 119 (622)
..-+++.++|||+||||+||++|||.|++.|.+.||++++++++||+||||| +++++ ..++++|+. +.
T Consensus 7 ~~~~~~~~~~~i~T~GC~~N~~dse~~~~~L~~~G~~~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~ 86 (502)
T PRK14326 7 PAAARGARTYQVRTYGCQMNVHDSERLAGLLEAAGYVRAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGM 86 (502)
T ss_pred cccCCCCCEEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCC
Confidence 3446777899999999999999999999999999999999999999999999 34444 344555654 46
Q ss_pred cEEEEccccccchh-hh-cc-cccEEEcCCchHHHHHHHHHHhcCCceEeecc---CCCCCCCCccccCCccEEEEEeCC
Q 007001 120 PLVVAGCVPQGSRD-LK-EL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHR---KKLPALDLPKVRRNKFVEILPINV 193 (622)
Q Consensus 120 ~VVVgGC~aq~~pe-~~-~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~---~~~~~~~lp~~r~~~~~a~I~isr 193 (622)
+|||||||||..|+ +. .. .+|.|+|+.++..|++++++...+........ ..+|. .+|..+...+.++|+|||
T Consensus 87 ~VvvgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~p~-~~p~~~~~~~~a~v~isr 165 (502)
T PRK14326 87 QIAVGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERARHNKEAQVEIAESLEQFPS-TLPARRESAYAAWVSISV 165 (502)
T ss_pred EEEEECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHHhhCCCcccccccccccccc-ccccccCCCceEEEEEcc
Confidence 79999999999996 43 33 46889999999999999988765543211111 11111 123222334678999999
Q ss_pred CCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeE
Q 007001 194 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 271 (622)
Q Consensus 194 GC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~i 271 (622)
|||++|+||.+|.++|+.|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.. ++ +..|+
T Consensus 166 GCp~~CsFC~ip~~rG~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~-i~--~l~~i 242 (502)
T PRK14326 166 GCNNTCTFCIVPSLRGKEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGE-ID--GLERV 242 (502)
T ss_pred CCCCCCccCceeccCCCcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHh-cC--CccEE
Confidence 99999999999999999999999999999999999999999999999999998742 357888888865 44 56789
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 007001 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351 (622)
Q Consensus 272 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG 351 (622)
|+++.+|..+++++ +..|.+.+++|++||||+||+|+++|+.|||+|+.+++.++++.+++++||+.+.+|||+||||
T Consensus 243 r~~~~~p~~~~~el--l~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~~IvGfPg 320 (502)
T PRK14326 243 RFTSPHPAEFTDDV--IEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTDIIVGFPG 320 (502)
T ss_pred EEeccChhhCCHHH--HHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEEEEEECCC
Confidence 99999998887654 4444455557999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEE
Q 007001 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 428 (622)
Q Consensus 352 ETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~ 428 (622)
||++||++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|++++.. .+.+++++|++++||||+.
T Consensus 321 ET~edf~~Tl~~i~~~~~~~~~~f~~sp~pGT~~~~~~~~v~~~v~~~R~~~l~~~~~~~~~~~~~~~vg~~~~vLve~~ 400 (502)
T PRK14326 321 ETEEDFQATLDVVREARFSSAFTFQYSKRPGTPAAEMEGQLPKAVVQERYERLVALQERISLEENRKLVGRTVELLVATG 400 (502)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCChHHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEec
Confidence 99999999999999999999999999999999999998 89999999999999999885 5788999999999999852
Q ss_pred -e-cC--CceEEEeecCCeEEEECCC----CCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 429 -A-AD--GIHLVGHTKGYVQVLVPST----GNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 429 -~-~~--~~~~~Grt~~y~~V~v~~~----~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
+ ++ ...+.||+++|..|+|+.. ...+|++|+|+|+++.+++|.|+++
T Consensus 401 ~~~~~~~~~~~~g~~~~~~~V~~~~~~~~~~~~~G~~v~v~I~~~~~~~L~g~~~ 455 (502)
T PRK14326 401 EGRKDAATHRMSGRARDGRLVHFTVPEGAPEVRPGDVVTVTVTYAAPHHLIADGG 455 (502)
T ss_pred ccccCCcCceeEEECCCCCEEEEccCCccccCCCCCEEEEEEEecccCcEEEEEe
Confidence 1 12 1257899999999999742 2348999999999999999999987
No 12
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=6.9e-74 Score=625.70 Aligned_cols=396 Identities=29% Similarity=0.478 Sum_probs=342.9
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHH---HHHHHHhcCC--CcEEEEc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMD---TLIAKCKSAK--KPLVVAG 125 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~---~ii~~~k~~~--~~VVVgG 125 (622)
|.+|||+||||++|++|||.|.+.|.+.||++++++++||+||||| +++++ ..++++++.+ ++|||||
T Consensus 1 ~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~G 80 (418)
T PRK14336 1 MPGYYLWTIGCQMNQAESERLGRLFELWGYSLADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTG 80 (418)
T ss_pred CCeEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 4589999999999999999999999999999999999999999999 34444 3345555544 5699999
Q ss_pred cccccchh-hh-ccc-ccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCCCCccccCCccEEEEEeCCCCCCCCCCc
Q 007001 126 CVPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYC 202 (622)
Q Consensus 126 C~aq~~pe-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGC~~~CsFC 202 (622)
|+||.+++ +. .++ +|.|+|+++...+.+.+... .+|. ..+..++|+|+||||++|+||
T Consensus 81 C~~~~~~~~l~~~~p~vd~v~g~~~~~~~~~~~~~~-----------------~~~~--~~~~~a~i~i~rGC~~~CsFC 141 (418)
T PRK14336 81 CLVGQDISLIRKKFPFVDYIFGPGSMPDWREIPEGF-----------------ILPL--KPPVSANVTIMQGCDNFCTYC 141 (418)
T ss_pred ChhcCCHHHHHhhCCCCcEEECCCCHHHHHHHHhhh-----------------ccCC--CCCeEEEEEeccCCCCCCccC
Confidence 99999986 54 565 57899999877666655311 0111 135678999999999999999
Q ss_pred ccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcc
Q 007001 203 KTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280 (622)
Q Consensus 203 ~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~ 280 (622)
.+|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..++|+.+.+|..
T Consensus 142 ~ip~~rG~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~ 218 (418)
T PRK14336 142 VVPYRRGREKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHD-IP--GLLRIRFLTSHPKD 218 (418)
T ss_pred CccccCCCCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHh-cC--CccEEEEeccChhh
Confidence 99999999999999999999999999999999999999999998753 469999999975 44 66799999899988
Q ss_pred hhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH
Q 007001 281 ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQT 360 (622)
Q Consensus 281 i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eT 360 (622)
+++.+ +..+...+++|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++||+.+.+|||+||||||+++|++|
T Consensus 219 i~~el--l~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~t 296 (418)
T PRK14336 219 ISQKL--IDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQS 296 (418)
T ss_pred cCHHH--HHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHH
Confidence 87654 4444445567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCceEE
Q 007001 361 VNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLV 436 (622)
Q Consensus 361 l~fl~el~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~ 436 (622)
++|+++++++.+++|.|+|+||||+++ |+ ++|++++++|+++|+++++. .++++.++|++.+||||+.. ++.+.
T Consensus 297 l~fi~~~~~~~~~v~~ysp~pGT~a~~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~--~~~~~ 374 (418)
T PRK14336 297 YKLMADIGYDAIHVAAYSPRPQTVAARDMADDVPVIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEGLQ--KNKWQ 374 (418)
T ss_pred HHHHHhcCCCEEEeeecCCCCCChhHhhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEcC--CCeEE
Confidence 999999999999999999999999994 87 89999999999999999995 56789999999999999742 22578
Q ss_pred EeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeecc
Q 007001 437 GHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 479 (622)
Q Consensus 437 Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~ 479 (622)
||+.+|.+|+++++....|++++|+|++++.++|.|+++...+
T Consensus 375 g~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~~ 417 (418)
T PRK14336 375 GRTLGGKLVFLESDLPLEGCLVNVKIFKTSPWSLQAKLVNILE 417 (418)
T ss_pred EECCCCeEEEECCCCCCCCCEEEEEEEEeecccEEEEEeeccC
Confidence 9999999999975433479999999999999999999887643
No 13
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=9e-74 Score=629.74 Aligned_cols=411 Identities=28% Similarity=0.463 Sum_probs=345.2
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHH---HHhcCC--CcEEEEcc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIA---KCKSAK--KPLVVAGC 126 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~---~~k~~~--~~VVVgGC 126 (622)
++|||+||||++|++|||.|.+.|.+.||++++. ++||+||||| ++++++.++ ++|+.+ .+||||||
T Consensus 4 ~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~GC 82 (446)
T PRK14337 4 RTFHIITFGCQMNVNDSDWLARALVARGFTEAPE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVGGC 82 (446)
T ss_pred cEEEEEeeCCCCcHHHHHHHHHHHHHCCCEECCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 4799999999999999999999999999999885 7899999999 445555543 345544 46999999
Q ss_pred ccccchh-h-hccc-ccEEEcCCchHHHHHHHHHHhcCCceEe-e-cc-CCCCCCC-CccccCCccEEEEEeCCCCCCCC
Q 007001 127 VPQGSRD-L-KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRL-L-HR-KKLPALD-LPKVRRNKFVEILPINVGCLGAC 199 (622)
Q Consensus 127 ~aq~~pe-~-~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~-~-~~-~~~~~~~-lp~~r~~~~~a~I~isrGC~~~C 199 (622)
+||.+++ + .+++ +|.|+|++++..++++++....+..... + +. ..++... ++........++|+|+||||++|
T Consensus 83 ~a~~~~~~~~~~~p~vd~vv~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~i~rGC~~~C 162 (446)
T PRK14337 83 VAQQIGSGFFSRFPQVRLVFGTDGIAMAPQALERLAEEPDLRLSLLDFSEHYPEREALWGNGTVPASAFVNIMQGCDNFC 162 (446)
T ss_pred ccccccHHHHhhCCCCcEEECCCCHHHHHHHHHHHhcCCCceecccccccccccccccccccCCCcEEEEEeccCCCCCC
Confidence 9999875 4 3564 6889999999999999987654322111 1 10 1112111 11222335689999999999999
Q ss_pred CCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CCCHHHHHHHHHHhCCCCCceeEEEeec
Q 007001 200 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRIGMT 276 (622)
Q Consensus 200 sFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~ 276 (622)
+||++|+.+|++|++|+++|++|++.+++.|+++|+|+|+|++.||.|. +..|.+|+++|.+ ++ +..++|+.+.
T Consensus 163 sFC~ip~~rG~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~~~ 239 (446)
T PRK14337 163 AYCIVPYTRGRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAA-LP--GLERLRFTTP 239 (446)
T ss_pred cCCCcccCCCCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHh-cC--CCcEEEEccC
Confidence 9999999999999999999999999999999999999999999998764 2478999999875 44 6678999989
Q ss_pred CCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 007001 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 356 (622)
Q Consensus 277 ~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeed 356 (622)
+|..+++.+ +..+...+.+|+++|||+||+|+++|+.|||+|+.+++.++++.+++.+|++.+.+|||+||||||++|
T Consensus 240 ~p~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~d~IvG~PgET~ed 317 (446)
T PRK14337 240 HPKDIAPEV--IEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTTDLIVGFPGETEED 317 (446)
T ss_pred CcccCCHHH--HHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEECCCCCHHH
Confidence 999888654 444444456799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecC--
Q 007001 357 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-- 431 (622)
Q Consensus 357 f~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~-- 431 (622)
|++|++|+++++++.+++|.|||+||||++.|+ +||++++++|.++|+++++. .+++++++|++++||||+..++
T Consensus 318 ~~~tl~~l~~~~~~~~~~f~ysp~pgT~a~~~~~~v~~~vk~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~~ 397 (446)
T PRK14337 318 FEQTLEAMRTVGFASSFSFCYSDRPGTRAEMLPGKVPEEVKSARLARLQELQNELTERWLQARVGRKTTVLLEGPSRKPG 397 (446)
T ss_pred HHHHHHHHHhcCCCeeEEEecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccccCC
Confidence 999999999999999999999999999999998 89999999999999999996 5788999999999999974322
Q ss_pred --CceEEEeecCCeEEEE--CCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 432 --GIHLVGHTKGYVQVLV--PSTGNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 432 --~~~~~Grt~~y~~V~v--~~~~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
+..+.||+.+|.+|.| +.+...+|++++|+|+++.+++|.|+++
T Consensus 398 ~~~~~~~g~~~~~~~v~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 445 (446)
T PRK14337 398 EGGDSWQGRDPGGRVVNVPLPAGADLTGRLVPVRITEAKKHSLVGEPA 445 (446)
T ss_pred CCCceEEEECCCCeEEEEecCCCcCCCCCEEEEEEEeeecceEEEEEC
Confidence 1357899999998755 3333348999999999999999999864
No 14
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=100.00 E-value=9.4e-74 Score=625.36 Aligned_cols=409 Identities=46% Similarity=0.786 Sum_probs=351.3
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCCCcEEEEccccccch
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSR 132 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~~~VVVgGC~aq~~p 132 (622)
+++|+||||+||++|||+|++.|.+.||++++++++||+++||| +.++++.++++++.+++|||||||||.+|
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADviiinTC~v~~~a~~~~~~~i~~~~~~~~~vvv~GC~a~~~~ 80 (420)
T TIGR01578 1 KVYVETYGCTLNNGDSEIMKNSLAAYGHELVNNAEEADLAILNTCTVKNKTEDTMLYRIESLMRNGKHVVVAGCMPQAQK 80 (420)
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCEECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHhcCCCEEEECCcCccCh
Confidence 58999999999999999999999999999999999999999999 55667778888777888999999999999
Q ss_pred h-hhcc-cccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCCCCccccCCccEEEEEeCCCCCCCCCCcccCccCCC
Q 007001 133 D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGH 210 (622)
Q Consensus 133 e-~~~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGC~~~CsFC~ip~~rG~ 210 (622)
+ +... +.+.++|+.++..++++++......... .. .....++.|..+.....++|+|+||||++|+||.+|..+|+
T Consensus 81 e~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~isrGC~~~CsfC~ip~~~G~ 158 (420)
T TIGR01578 81 ESVYDNGSVASVLGVQAIDRLVEVVEETLKKKVHG-RR-EAGTPLSLPKPRKNPLIEIIPINQGCLGNCSYCITKHARGK 158 (420)
T ss_pred HHHHhhCCccEEEcCCCHHHHHHHHHHHhcCCccc-cc-ccccccccccccCCCcEEEEEEccCCCCCCCCCccccCCCC
Confidence 7 4433 5567899999999999987764321110 00 00111122333334578999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
+|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.+..+.+|++.+.+ ++ +..++|+++++|..+....+++.+
T Consensus 159 ~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~-i~--~~~~ir~~~~~p~~~~~~~~~l~~ 235 (420)
T TIGR01578 159 LASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE-IP--GEFRLRVGMMNPKNVLEILDELAN 235 (420)
T ss_pred cccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh-CC--CCcEEEEcCCCCCcccccCHHHHH
Confidence 999999999999999999999999999999999998866679999988865 44 567899999999765443455666
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d 370 (622)
++..+++|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||||++||++|++|+++++++
T Consensus 236 ~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~ 315 (420)
T TIGR01578 236 VYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTDIIVGFPTETDDDFEETMELLRKYRPE 315 (420)
T ss_pred HHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEeeEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 66667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCceEEEeecCCeEEEEC
Q 007001 371 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVP 448 (622)
Q Consensus 371 ~v~i~~ysP~PGTpa~~~~~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~ 448 (622)
.+++|+|+|+||||+++++++|.+++++|.++|++++++ .+++++++|++++||||+.+.++ .+.|++ +|.+|++.
T Consensus 316 ~i~~~~~~p~pGT~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~-~~~~~~-~~~~v~~~ 393 (420)
T TIGR01578 316 KINITKFSPRPGTPAAKMKRIPTNIVKKRSKRLTKLYEQVLLEMRDNLIGTRVHVLVTKEGKGD-SLDDED-AYRQVVIR 393 (420)
T ss_pred EEEEEEeeCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecCCCC-eeeeCC-CCcEEEEc
Confidence 999999999999999999999999999999999999996 57889999999999999754333 566775 99988886
Q ss_pred CCCCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 449 STGNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 449 ~~~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
.....+|++++|+|+++.+++|.|+++
T Consensus 394 ~~~~~~g~~~~v~i~~~~~~~l~g~~~ 420 (420)
T TIGR01578 394 SRTREPGEFAGVEITGAKTAYLIGEII 420 (420)
T ss_pred CCCCCCCCEEEEEEEeeecceEEEEEC
Confidence 443458999999999999999999864
No 15
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=1.4e-73 Score=628.38 Aligned_cols=417 Identities=32% Similarity=0.498 Sum_probs=351.7
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHH---HHHhcC--CCcEEEEc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLI---AKCKSA--KKPLVVAG 125 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii---~~~k~~--~~~VVVgG 125 (622)
|++|+|+||||++|++|||.|++.|.+.||+++++.++||+|+||| ++++++.+ +++|+. +.+|||||
T Consensus 3 ~~~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgG 82 (444)
T PRK14325 3 MKKLYIKTYGCQMNEYDSSKMADLLGAEGYELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGG 82 (444)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5789999999999999999999999999999999999999999999 34444443 444554 46799999
Q ss_pred cccccchh-hh-cc-cccEEEcCCchHHHHHHHHHHh-cCCceEeeccCCCCCCC-CccccCCccEEEEEeCCCCCCCCC
Q 007001 126 CVPQGSRD-LK-EL-EGVSIVGVQQIDRVVEVVEETL-KGHEVRLLHRKKLPALD-LPKVRRNKFVEILPINVGCLGACT 200 (622)
Q Consensus 126 C~aq~~pe-~~-~~-~~d~VvG~~~~~~l~ell~~~~-~g~~~~~~~~~~~~~~~-lp~~r~~~~~a~I~isrGC~~~Cs 200 (622)
|||+..|+ +. .+ .+|.|+|++++..|++++++.. .|...........+.++ +|..+.....++|+|+||||++|+
T Consensus 83 c~as~~~ee~~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~d~~p~~~~~~~~~~i~isrGCp~~Cs 162 (444)
T PRK14325 83 CVAQQEGEEILKRAPYVDIVFGPQTLHRLPEMIARARRGGKPVVDISFPEIEKFDHLPEPRAEGPSAFVSIMEGCDKYCT 162 (444)
T ss_pred chhccCHHHHHhhCCCCcEEECCCCHHHHHHHHHHHHhcCCceeeecccccccccccccccCCCceEEEEhhhCCCCCCC
Confidence 99999997 33 35 4688999999999999998764 44322111111111221 232222456789999999999999
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHHHHhCCCCCceeEEEeec
Q 007001 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGMT 276 (622)
Q Consensus 201 FC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~-d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~ 276 (622)
||.+|..+|+.++||+++|++|++.+++.|+++|+|+|+|++.|+. +. ...+.+|++.|.+ ++ +..++|+++.
T Consensus 163 FC~~p~~~G~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 239 (444)
T PRK14325 163 FCVVPYTRGEEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAA-ID--GIERIRYTTS 239 (444)
T ss_pred ccccCcccCCcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHh-cC--CccEEEEccC
Confidence 9999999999999999999999999999999999999999999943 21 2368999999875 44 5678999888
Q ss_pred CCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 007001 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 356 (622)
Q Consensus 277 ~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeed 356 (622)
+|..+++.+ +..+.+.+++|+++|+|+||+|+++|+.|+|+++.+++.++++.++++.||+.+.+|||+||||||+++
T Consensus 240 ~p~~~~~el--l~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~~~IvG~PgET~ed 317 (444)
T PRK14325 240 HPRDFTDDL--IEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISSDFIVGFPGETDED 317 (444)
T ss_pred CcccCCHHH--HHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHH
Confidence 998887654 444444556799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCc
Q 007001 357 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGI 433 (622)
Q Consensus 357 f~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~ 433 (622)
|++|++|+++++++.+++|.|+|+||||+++|+ ++|.+++++|.++|+++++. .+++++++|++++||||+..++++
T Consensus 318 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~~~~~ 397 (444)
T PRK14325 318 FEATMKLIEDVGFDQSFSFIYSPRPGTPAADLPDDVPEEVKKERLQRLQALINQQQMAFSRSMVGTVQRVLVEGPSRKDG 397 (444)
T ss_pred HHHHHHHHHhcCCCeeeeeeccCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEeecCCC
Confidence 999999999999999999999999999999998 99999999999999999995 578889999999999997544323
Q ss_pred eEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeecc
Q 007001 434 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILN 479 (622)
Q Consensus 434 ~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~ 479 (622)
.++|||++|.+|+|.++...+|++++|+|+++.+++|.|++++..+
T Consensus 398 ~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~~~~ 443 (444)
T PRK14325 398 QLIGRTENNRVVNFEGDPDLIGQFVDVKITEAYPNSLRGELVRTED 443 (444)
T ss_pred eEEEECCCCcEEEECCCCCCCCCEEEEEEEEcccccEEEEEeecCC
Confidence 6889999999999975433589999999999999999999887643
No 16
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5.4e-73 Score=622.75 Aligned_cols=413 Identities=31% Similarity=0.515 Sum_probs=349.8
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHH---HHHHHHhcCC--CcEEEEcc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMD---TLIAKCKSAK--KPLVVAGC 126 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~---~ii~~~k~~~--~~VVVgGC 126 (622)
++|+|+||||++||+|||.|.+.|.+.||+++++.++||+|+||| +++++ +.++++|+.+ .+||||||
T Consensus 2 ~~~~~~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC 81 (439)
T PRK14328 2 KKYFIETYGCQMNEEDSEKLAGMLKSMGYERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGC 81 (439)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHCcCEECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 579999999999999999999999999999999999999999999 44444 3355566554 46999999
Q ss_pred cccc--chh-hh-ccc-ccEEEcCCchHHHHHHHHHHhcCC-ceEeeccCCCCCC-CCccccCCccEEEEEeCCCCCCCC
Q 007001 127 VPQG--SRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGH-EVRLLHRKKLPAL-DLPKVRRNKFVEILPINVGCLGAC 199 (622)
Q Consensus 127 ~aq~--~pe-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~-~~~~~~~~~~~~~-~lp~~r~~~~~a~I~isrGC~~~C 199 (622)
|||. .++ +. .++ +|.|+|++++..+++++.....+. ..........+.+ .+|..+.....+||+|+||||++|
T Consensus 82 ~a~~~~~~~~~~~~~~~vd~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~rGC~~~C 161 (439)
T PRK14328 82 MMQQKGMAEKIKKKFPFVDIIFGTHNIHKFPEYLNRVKEEGKSVIEIWEKEDGIVEGLPIDRKSKVKAFVTIMYGCNNFC 161 (439)
T ss_pred hhcccccHHHHHhhCCCceEEECCCCHHHHHHHHHHHhcCCCceeeecccccccccccccccCCCcEEEEEHHhCcCCCC
Confidence 9999 665 43 454 678999999999999998876432 2111111111111 123222245678999999999999
Q ss_pred CCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecC
Q 007001 200 TYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTN 277 (622)
Q Consensus 200 sFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~ 277 (622)
+||.+|..+|++|++|+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+|++.+.+ ++ +..++|+.+.+
T Consensus 162 sfC~~p~~~g~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~ 238 (439)
T PRK14328 162 TYCIVPYVRGRERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNE-ID--GLERIRFMTSH 238 (439)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHh-cC--CCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999997643 468999998875 44 66789998889
Q ss_pred CcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHH
Q 007001 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDF 357 (622)
Q Consensus 278 p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf 357 (622)
|..+++.+ +..+...+++|+++|+|+||+|+++|+.|||+|+.+++.++++.+++++|++.+.+|||+||||||++||
T Consensus 239 P~~i~~el--l~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~ 316 (439)
T PRK14328 239 PKDLSDDL--IEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTDIIVGFPGETEEDF 316 (439)
T ss_pred hhhcCHHH--HHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHH
Confidence 98887655 4444455557999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecC-Cc
Q 007001 358 NQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-GI 433 (622)
Q Consensus 358 ~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~-~~ 433 (622)
++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|.+.|.++++. .+++++++|++++||+|+...+ ++
T Consensus 317 ~~tl~~i~~l~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~ 396 (439)
T PRK14328 317 EETLDLVKEVRYDSAFTFIYSKRKGTPAAKMEDQVPEDVKHERFNRLVELQNKISLEKNKEYEGKIVEVLVEGPSKNDEN 396 (439)
T ss_pred HHHHHHHHhcCCCcccceEecCCCCChhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCc
Confidence 99999999999999999999999999999997 89999999999999999986 5788999999999999975332 23
Q ss_pred eEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEe
Q 007001 434 HLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476 (622)
Q Consensus 434 ~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~ 476 (622)
.+.||+++|.+|+++++...+|++++|+|++++.++|.|++++
T Consensus 397 ~~~g~~~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~~ 439 (439)
T PRK14328 397 KLTGRTRTNKLVNFIGDKELIGKLVNVKITKANSFSLTGEVIE 439 (439)
T ss_pred eEEEECCCCeEEEECCCCCCCCCEEEEEEEeeecceEEEEEeC
Confidence 6889999999999975433579999999999999999998763
No 17
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=100.00 E-value=9.2e-73 Score=620.77 Aligned_cols=411 Identities=30% Similarity=0.503 Sum_probs=349.5
Q ss_pred EEEEEecccccchhHHHHHHHHHHhc-CCeeeCCCCCCcEEEEec-------hHHHHHHH---HHHhcCC--CcEEEEcc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAF-GYALTDNSEEADIWLINT-------QSAMDTLI---AKCKSAK--KPLVVAGC 126 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~-G~~~v~~~~~ADlviINT-------~~~~~~ii---~~~k~~~--~~VVVgGC 126 (622)
+|+|+||||++|++|||.|++.|.+. ||+++++.++||+||||| ++++++.+ +++|+.+ .+||||||
T Consensus 1 ~~~i~t~GC~~N~~dse~~~~~l~~~~G~~~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC 80 (438)
T TIGR01574 1 KLFIQTYGCQMNVRDSEHMAALLTAKEGYALTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGC 80 (438)
T ss_pred CeEEEeCCCCCcHHHHHHHHHHHHhcCCcEECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCc
Confidence 58999999999999999999999999 999999999999999999 45555555 5566554 46999999
Q ss_pred ccccchh-hh-ccc-ccEEEcCCchHHHHHHHHHHhcCCc-eEeeccCCCCCC-CCccccC-CccEEEEEeCCCCCCCCC
Q 007001 127 VPQGSRD-LK-ELE-GVSIVGVQQIDRVVEVVEETLKGHE-VRLLHRKKLPAL-DLPKVRR-NKFVEILPINVGCLGACT 200 (622)
Q Consensus 127 ~aq~~pe-~~-~~~-~d~VvG~~~~~~l~ell~~~~~g~~-~~~~~~~~~~~~-~lp~~r~-~~~~a~I~isrGC~~~Cs 200 (622)
|||..|+ +. .++ +|.|+|++++..+++++.....+.. .........+.. .+|.... ....++|+++||||++|+
T Consensus 81 ~a~~~~~~~~~~~~~vd~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~rGC~~~Cs 160 (438)
T TIGR01574 81 MASHLGNEIFQRAPYVDFVFGTRNIHRLPQAIKTPLTQKFMVVDIDSDESEVAGYFADFRNEGIYKSFINIMIGCNKFCT 160 (438)
T ss_pred cccccHHHHHhcCCCCcEEECCCCHHHHHHHHHHHhcCCCceeeeccccccccccccccccCCceeEEeehhcCCCCCCC
Confidence 9999986 44 344 6789999999999999987654432 111111111111 1232222 346799999999999999
Q ss_pred CcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcC---CCHHHHHHHHHHhCCCCCceeEEEeec
Q 007001 201 YCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIG---VNLPILLNAIVAELPPDGSTMLRIGMT 276 (622)
Q Consensus 201 FC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~y-g~d~~---~~l~eLL~~l~~~l~~~~~~~iri~~~ 276 (622)
||.+|..+|+.|++|+++|++|++.+++.|+++|+|+|+|++.| |.|.. ..|.+||+.|.+ .+ +..|+|++++
T Consensus 161 fC~~~~~~G~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~ 237 (438)
T TIGR01574 161 YCIVPYTRGDEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELST-ID--GIERIRFTSS 237 (438)
T ss_pred CCCeeeecCCCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHh-cC--CceEEEEecC
Confidence 99999999999999999999999999999999999999999999 77642 368999999875 33 6789999999
Q ss_pred CCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH
Q 007001 277 NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED 356 (622)
Q Consensus 277 ~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeed 356 (622)
+|..+++.+ +..+.+.+++|+++|+|+||+|+++|+.|+|+|+.+++.++++.+++++|++.+.+|||+||||||++|
T Consensus 238 ~p~~l~~el--l~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~~d~IvG~PgEt~ed 315 (438)
T TIGR01574 238 HPLDFDDDL--IEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSISTDIIVGFPGETEED 315 (438)
T ss_pred CcccCCHHH--HHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEeeCEEEeCCCCCHHH
Confidence 998887755 444555566799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCC-
Q 007001 357 FNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADG- 432 (622)
Q Consensus 357 f~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~- 432 (622)
|++|++|+++++++++++|.|+|+||||+++++ ++|++++++|.++|.+++++ .+++++++|++.+||||+...++
T Consensus 316 ~~~tl~~i~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~ 395 (438)
T TIGR01574 316 FEETLDLLREVEFDSAFSFIYSPRPGTPAADMPDQIPEEIKKRRLQRLQARHNEILDKKMRKQEGKTFKVLVEGLSRNNP 395 (438)
T ss_pred HHHHHHHHHhcCCCeeeeEEecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCC
Confidence 999999999999999999999999999999998 89999999999999999985 57889999999999999753333
Q ss_pred ceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 433 IHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 433 ~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
..+.|||++|.+|+|+++....|++++|+|+++.+++|.|+++
T Consensus 396 ~~~~g~t~~~~~v~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 438 (438)
T TIGR01574 396 EELAGRTENNFLVNFEGSEDLIGKFVDVKITNVKRMSLRGEIV 438 (438)
T ss_pred ceEEEECCCCCEEEECCCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 2578999999999997544358999999999999999999863
No 18
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=5.1e-72 Score=617.64 Aligned_cols=418 Identities=30% Similarity=0.517 Sum_probs=357.1
Q ss_pred CCCCCCCCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHH---HHHHhcCC-
Q 007001 50 SLSPKIPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTL---IAKCKSAK- 118 (622)
Q Consensus 50 ~~~~~~~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~i---i~~~k~~~- 118 (622)
+..++.|++++|||+||||+||++|||.|.+.|.+.||++++++++||+||||| ++++++. ++++|+.+
T Consensus 12 ~~~~~~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p 91 (459)
T PRK14338 12 PDRDATPRERRYYVWTVGCQMNVSDSERLEAALQGVGYSPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRP 91 (459)
T ss_pred cccccCCCCCEEEEEecCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCC
Confidence 456888999999999999999999999999999999999999999999999999 4444443 45566654
Q ss_pred -CcEEEEccccccchh-h--hccc-ccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCCCCccccCCccEEEEEeCC
Q 007001 119 -KPLVVAGCVPQGSRD-L--KELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINV 193 (622)
Q Consensus 119 -~~VVVgGC~aq~~pe-~--~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isr 193 (622)
.+|||+||+||..++ + ..++ +|.|+|+++++.+++++...... .. .+.++....+.....+||+|+|
T Consensus 92 ~~~ivv~GC~a~~~~~~~~~~~~p~vd~v~g~~~~~~i~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~i~I~r 163 (459)
T PRK14338 92 DTRIVLWGCMVGPNNQSIFAERLPMVDHFVSPSAVDEVVALAPNPIYQ-----LD---EPALPVADWSHPPVTVHVPIIY 163 (459)
T ss_pred CCEEEEeCCccccChhHhhHhcCCCCcEEECCccHHHHHHHHHhhccc-----cc---cccccccccCCCceEEEEEccc
Confidence 469999999999986 4 4564 67899999999999988542110 00 1111111112335678999999
Q ss_pred CCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeE
Q 007001 194 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTML 271 (622)
Q Consensus 194 GC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~i 271 (622)
|||++|+||.+|..+|+.|++|+++|++|++.+.+.|+++|+|+|++++.||.|.. ..+.+|++.+.+ .+ +..++
T Consensus 164 GC~~~CsfC~~p~~~G~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~-~~--gi~~i 240 (459)
T PRK14338 164 GCNMSCSYCVIPLRRGRERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE-IP--GLERL 240 (459)
T ss_pred CCCCCCCcCCeeccCCCCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh-cC--CcceE
Confidence 99999999999999999999999999999999999999999999999999998742 358899999876 33 56688
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 007001 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351 (622)
Q Consensus 272 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG 351 (622)
|+.+.+|..+++.+ +..+...+.+|+++|+|+||+|+++|+.|+|+++.+++.++++.+++.+||+.+.+|||+||||
T Consensus 241 r~~~~~p~~i~~el--l~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~Pg 318 (459)
T PRK14338 241 RFLTSHPAWMTDRL--IHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTDIIVGHPG 318 (459)
T ss_pred EEEecChhhcCHHH--HHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEECCC
Confidence 98888999888755 4444444557899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-C----CCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEE
Q 007001 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K----VPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIW 424 (622)
Q Consensus 352 ETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~----v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vl 424 (622)
||++||++|++|+++++++.+++|.|+|+||||+++|+ + +|++++++|.+.|.++++. .++++.++|++.+||
T Consensus 319 ET~ed~~~ti~~l~~l~~~~v~i~~ysp~pGT~~~~~~~~~~~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~~G~~~~vl 398 (459)
T PRK14338 319 ETEEQFQRTYDLLEEIRFDKVHIAAYSPRPGTLAAEMEDDPALAVPPEEKQRRRRALEQLQEQIATERNARFLGQTVEVL 398 (459)
T ss_pred CCHHHHHHHHHHHHHcCCCEeEEEecCCCCCChhhhCcCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999998 7 9999999999999999986 468899999999999
Q ss_pred EEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeeccccc
Q 007001 425 ITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 482 (622)
Q Consensus 425 ve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~~~~ 482 (622)
||+.. ++.+.||+++|.+|+|+++...+|++++|+|+++..++|.|+++.+...+.
T Consensus 399 ve~~~--~~~~~g~~~~~~~v~~~~~~~~~G~~~~v~i~~~~~~~l~g~~~~~~~~~~ 454 (459)
T PRK14338 399 VEGEA--KGKWRGRTRGNKLVFFSAPGDWTGKLVPVRITHTSPWSLQGELVASDAAAG 454 (459)
T ss_pred EEEcC--CCeEEEECCCCeEEEECCCCCCCCCEEEEEEEEeecCcEEEEEeeccccch
Confidence 99742 235789999999999975444589999999999999999999998866543
No 19
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=100.00 E-value=3.4e-72 Score=615.09 Aligned_cols=406 Identities=36% Similarity=0.609 Sum_probs=348.8
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCCC---cEEEEccccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKK---PLVVAGCVPQ 129 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~~---~VVVgGC~aq 129 (622)
+|||+||||++|++|||.|.+.|.+.||++++++++||||+||| ++.+.++++++++.++ +||||||||+
T Consensus 1 ~~~~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a~ 80 (429)
T TIGR00089 1 KVYIETYGCQMNEADSEIMAGLLKEAGYEVTDDPEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLAQ 80 (429)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECcccc
Confidence 58999999999999999999999999999999999999999998 5566788888887776 8999999999
Q ss_pred cchhh--hcc-cccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCC-CCcccc-CCccEEEEEeCCCCCCCCCCccc
Q 007001 130 GSRDL--KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPAL-DLPKVR-RNKFVEILPINVGCLGACTYCKT 204 (622)
Q Consensus 130 ~~pe~--~~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~-~lp~~r-~~~~~a~I~isrGC~~~CsFC~i 204 (622)
..|+. ..+ ++|.|+|++++..|++++++.. +....++... .+.+ .+|..+ ....+++|+++||||++|+||.+
T Consensus 81 ~~~ee~~~~~~~vd~vvg~~~~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~i~~srGC~~~CsfC~~ 158 (429)
T TIGR00089 81 REGEELLKRIPEVDIVLGPQNKERIPEAIESAE-QEKQVVFNIS-KDVYEELPRPRSFGKTRAFLKIQEGCDKFCTYCIV 158 (429)
T ss_pred cCHHHHHhhCCCCCEEECCCCHHHHHHHHHHHh-cCCceecccc-ccchhcccccccCCCeEEEEEHHhCcCCCCCcCce
Confidence 99963 344 5788999999999999998865 3322222111 1111 123322 23467899999999999999999
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcchh
Q 007001 205 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL 282 (622)
Q Consensus 205 p~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~ 282 (622)
|..+|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++++.+ ++ +..|+++++++|..++
T Consensus 159 ~~~~g~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~-~~--g~~~i~~~~~~p~~i~ 235 (429)
T TIGR00089 159 PYARGRERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSK-ID--GIERIRFGSSHPDDVT 235 (429)
T ss_pred ecccCCCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhc-CC--CCCEEEECCCChhhcC
Confidence 999999999999999999999999999999999999999987753 468999999865 44 5789999989998777
Q ss_pred HHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHH
Q 007001 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVN 362 (622)
Q Consensus 283 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~ 362 (622)
+.+ +..+.+.+++|+++++|+||+|+++|+.|+|+++.+++.++++.++++.|++.+.+|||+||||||+++|++|++
T Consensus 236 ~el--l~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~ 313 (429)
T TIGR00089 236 DDL--IELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLD 313 (429)
T ss_pred HHH--HHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHH
Confidence 654 333444445799999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEe-cCCceEEEe
Q 007001 363 LIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIA-ADGIHLVGH 438 (622)
Q Consensus 363 fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~-~~~~~~~Gr 438 (622)
|+++++++.+++|+|+|+||||+++|+ ++|++++++|.++|+++++. .+++++++|++++||||+.+ .+++.++||
T Consensus 314 ~i~~~~~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~~g~ 393 (429)
T TIGR00089 314 LVEEVKFDKLHSFIYSPRPGTPAADMKDQVPEEVKKERLERLIALQKEISLEKNKKYVGKTLEVLVEGEEGKKEGELTGR 393 (429)
T ss_pred HHHhcCCCEeeccccCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEecccCCCCeEEEE
Confidence 999999999999999999999999998 89999999999999999986 56889999999999999732 233468899
Q ss_pred ecCCeEEEECCC--CCCCCCEEEEEEEEEeeceEEE
Q 007001 439 TKGYVQVLVPST--GNMLGTSALVKITSVGRWSVFG 472 (622)
Q Consensus 439 t~~y~~V~v~~~--~~~~G~~v~V~I~~~~~~~l~G 472 (622)
+.+|.+|+|+.. ...+|++++|+|+++..++|.|
T Consensus 394 ~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 429 (429)
T TIGR00089 394 TENYKPVVFEGGVGKNLIGKFVKVKITEAAEYSLIG 429 (429)
T ss_pred CCCCeEEEECCCCCcCCCCCEEEEEEEecccceeEC
Confidence 999999999753 2358999999999999999876
No 20
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=100.00 E-value=5.7e-72 Score=614.27 Aligned_cols=405 Identities=25% Similarity=0.442 Sum_probs=341.4
Q ss_pred CCCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCCCcEEEEccc
Q 007001 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCV 127 (622)
Q Consensus 55 ~~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~~~VVVgGC~ 127 (622)
+...++|||+||||+||++|||.|++.|.+.||+.++++++||+|+||| ++++++.++++++.+++|||+||+
T Consensus 4 ~~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~~~~~aD~ivinTC~v~~~a~~k~~~~i~~~~~~~~~ivv~GC~ 83 (440)
T PRK14862 4 MTAAPKIGFVSLGCPKALVDSERILTQLRAEGYEISPSYDGADLVIVNTCGFIDSAVQESLEAIGEALAENGKVIVTGCL 83 (440)
T ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEecccccchHHHHHHHHHHHHHhcCCCEEEECCc
Confidence 3445689999999999999999999999999999999999999999999 555566677776666679999999
Q ss_pred cccchhhhc-cc-ccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCCCCccc--cCCccEEEEEeCCCCCCCCCCcc
Q 007001 128 PQGSRDLKE-LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKV--RRNKFVEILPINVGCLGACTYCK 203 (622)
Q Consensus 128 aq~~pe~~~-~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~--r~~~~~a~I~isrGC~~~CsFC~ 203 (622)
|+...++.+ ++ +|.|+|+.++..+++++............ ....++. .....+++|++|||||++|+||.
T Consensus 84 a~~~~~~~~~~~~v~~v~g~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~v~isrGCp~~CsFC~ 157 (440)
T PRK14862 84 GAKEDQIREVHPKVLAVTGPHAYEQVMEAVHEHVPKPHDPFV------DLVPPQGVKLTPRHYAYLKISEGCNHRCTFCI 157 (440)
T ss_pred ccCHHHHHhhCCCceEEECCCCHHHHHHHHHHhhcccccccc------ccCcchhcccCCCcEEEEEeccCCCCCCccCC
Confidence 995333544 34 57799999999999988765321110000 0000110 12356799999999999999999
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC------------CCHHHHHHHHHHhCCCCCceeE
Q 007001 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG------------VNLPILLNAIVAELPPDGSTML 271 (622)
Q Consensus 204 ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~------------~~l~eLL~~l~~~l~~~~~~~i 271 (622)
+|.++|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..+.+|++.|.+. +. |+
T Consensus 158 ip~~~G~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~~~~~~~Ll~~l~~~----~~-~~ 232 (440)
T PRK14862 158 IPSMRGDLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPVKTRMTDLCEALGEL----GA-WV 232 (440)
T ss_pred cccccCCccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccchhhHHHHHHHHHHhc----CC-EE
Confidence 9999999999999999999999999999999999999999987631 3588888888753 34 89
Q ss_pred EEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC
Q 007001 272 RIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG 351 (622)
Q Consensus 272 ri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG 351 (622)
|+.+++|..+.+ ++.++++.+++++++|||+||+|+++|+.|||+++.+++.++++.++++.|++.+.++||+||||
T Consensus 233 r~~~~~p~~~~d---ell~~m~~g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~~i~i~t~~IvGfPg 309 (440)
T PRK14862 233 RLHYVYPYPHVD---EVIPLMAEGKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICPDLTIRSTFIVGFPG 309 (440)
T ss_pred EEecCCCCcCCH---HHHHHHhcCCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCCCceecccEEEECCC
Confidence 999888876554 34555555666779999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEE
Q 007001 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEI 428 (622)
Q Consensus 352 ETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~ 428 (622)
||+++|++|++|+++++++.+++|.|+|+||||+++|+ ++|++++++|+++|+++++. .+++++++|++++||||+.
T Consensus 310 ET~edf~~tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlie~~ 389 (440)
T PRK14862 310 ETEEDFQMLLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEVKEERWARFMEVQQQISAARLQRKVGRTLQVLIDEV 389 (440)
T ss_pred CCHHHHHHHHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEc
Confidence 99999999999999999999999999999999999998 89999999999999999885 5788999999999999975
Q ss_pred ecCCceEEEeecCCeE-----EEECCCCC-CCCCEEEEEEEEEeeceEEEEEE
Q 007001 429 AADGIHLVGHTKGYVQ-----VLVPSTGN-MLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 429 ~~~~~~~~Grt~~y~~-----V~v~~~~~-~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
.+++ ++||+++|.+ |++..... .+|++++|+|+++.+++|.|+++
T Consensus 390 ~~~~--~~Gr~~~~~~~v~~~v~~~~~~~~~~g~~~~v~i~~~~~~~l~g~~~ 440 (440)
T PRK14862 390 DEEG--AIGRSKADAPEIDGVVYLNGETGLKVGDIVRVKITDADEYDLWGEVV 440 (440)
T ss_pred CCCC--eEEECcccCccCCCceeccCCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 4443 5899999998 88764332 47999999999999999999864
No 21
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=3.5e-71 Score=604.71 Aligned_cols=397 Identities=28% Similarity=0.493 Sum_probs=338.5
Q ss_pred cchhHHHHHHHHHH-hcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhc---CCCcEEEEccccccchh-h-hc
Q 007001 70 HNQSDSEYMAGQLS-AFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKS---AKKPLVVAGCVPQGSRD-L-KE 136 (622)
Q Consensus 70 ~N~~Dse~m~~~L~-~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~---~~~~VVVgGC~aq~~pe-~-~~ 136 (622)
||++|||.|++.|. +.||++++++++||+||||| ++++++.++++++ .+++|||+||+||.+++ + ..
T Consensus 1 ~N~~dse~~~~~l~~~~G~~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~GC~a~~~~~~~~~~ 80 (420)
T PRK14339 1 MNVRDSEHMIAELSQKEDYKLTQDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVCGCTASHLGEEIIKR 80 (420)
T ss_pred CCHHHHHHHHHHHhhcCCcEECCCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEECCccccCCHHHHhh
Confidence 79999999999999 58999999999999999999 5666666776643 45679999999999875 4 35
Q ss_pred cc-ccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCCCCccccCCccEEEEEeCCCCCCCCCCcccCccCCCcCCCC
Q 007001 137 LE-GVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKHARGHLGSYT 215 (622)
Q Consensus 137 ~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~ 215 (622)
++ +|.|+|+.++..+++++..... ..... ... ...+..+..+.....++|+||||||++|+||.+|.++|+.+++|
T Consensus 81 ~~~vd~v~g~~~~~~i~~~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~a~i~isrGC~~~CsFC~ip~~rG~~~sr~ 157 (420)
T PRK14339 81 APYVDFVLGARNVSKISQVIHTPKA-VEVDI-DYD-ESTYAFADFRKSPYKSLVNISIGCDKKCTYCIVPHTRGKEISIP 157 (420)
T ss_pred CCCCcEEECCCCHHHHHHHHHhhcc-cceec-ccc-ccccccccccCCCeEEEEEecCCCCCCCCcCCcccccCCCCCCC
Confidence 65 6789999999999999875311 11110 000 00111112223456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-----CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 216 ~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-----~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
+++|++|++.+.+.|+++|+|+|+|++.||.|.. ..|.+||+.+.+ ++ +..|+|+++++|..+++++ +..
T Consensus 158 ~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~-~~--g~~~ir~~s~~p~~~~~el--l~~ 232 (420)
T PRK14339 158 MDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSE-IE--GLERIRFTSPHPLHMDDKF--LEE 232 (420)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhc-CC--CccEEEECCCChhhcCHHH--HHH
Confidence 9999999999999999999999999999998741 358999999875 44 6789999989998887655 444
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d 370 (622)
+.+.+.+|+++|||+||+|+++|+.|||+|+.+++.++++.+++++|++.+.+|||+||||||++||++|++|+++++++
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~i~~d~IvGfPgETeedf~~Tl~fl~~l~~~ 312 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVSISTDIIVGFPGESDKDFEDTMDVLEKVRFE 312 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 55555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCceEEEeecCCeEEEE
Q 007001 371 QVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLV 447 (622)
Q Consensus 371 ~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v 447 (622)
.+++|.|+|+||||+++|+ ++|++++++|.++|.++++. ++++++++|++++||||+..+++ .+.|||.+|.+|+|
T Consensus 313 ~~~~f~~sp~pGT~a~~~~~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~~~-~~~g~t~~~~~v~~ 391 (420)
T PRK14339 313 QIFSFKYSPRPLTEAAAWKNQVDEEVASERLERLQNRHKEILDEIAKKEVGKTHVVLFEELRANG-GVAGRSDNNKLVQV 391 (420)
T ss_pred EEeeEecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCC-eEEEECCCCeEEEE
Confidence 9999999999999999998 89999999999999999995 57889999999999999754333 67899999999999
Q ss_pred CCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 448 PSTGNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 448 ~~~~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
+.+...+|++++|+|+++.+++|.|+++
T Consensus 392 ~~~~~~~G~~~~v~i~~~~~~~l~g~~~ 419 (420)
T PRK14339 392 KGSEELLGEFVKVKITNASRGVLYGEIV 419 (420)
T ss_pred CCCCCCCCCEEEEEEEeeecCcEEEEEC
Confidence 7544358999999999999999999875
No 22
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=100.00 E-value=3.7e-71 Score=606.93 Aligned_cols=406 Identities=27% Similarity=0.474 Sum_probs=343.1
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCCCcEEEEccccccch
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSR 132 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~~~VVVgGC~aq~~p 132 (622)
+|||+||||+|||+|||.|++.|.+.||+++++.++||+|+||| +++++++++++++++++||||||||+..|
T Consensus 1 ~~~i~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a~~~p 80 (430)
T TIGR01125 1 KIGFISLGCPKNLVDSEVMLGILREAGYEVTPNYEDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLVQRYK 80 (430)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCccccch
Confidence 58999999999999999999999999999999999999999998 55677889999988999999999999999
Q ss_pred h-h-hcc-cccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCCCCcccc-CCccEEEEEeCCCCCCCCCCcccCccC
Q 007001 133 D-L-KEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVR-RNKFVEILPINVGCLGACTYCKTKHAR 208 (622)
Q Consensus 133 e-~-~~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r-~~~~~a~I~isrGC~~~CsFC~ip~~r 208 (622)
+ + ..+ .+|.|+|+..+..+.+.+............ ...+....|+.. ....+++|+++||||++|+||.+|..+
T Consensus 81 ee~~~~~~~vd~v~g~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~srGC~~~CsfC~~~~~~ 158 (430)
T TIGR01125 81 EELKEEIPEVHAITGSGDVENILNAIESREPGDKIPFK--SEIEMGEVPRILLTPRHYAYLKVAEGCNRRCAFCIIPSIR 158 (430)
T ss_pred HHHHhhCCCCcEEECCCCHHHHHHHHHHHhccCCcccc--cccccccccccccCCCeEEEEEEccCCCCCCCcCCeeccc
Confidence 7 3 335 467899998877777766553322111000 001000112211 124678999999999999999999999
Q ss_pred CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHH
Q 007001 209 GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 209 G~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 286 (622)
|++|+||+++|++|++.+.+.|+++|+|+|+|++.||.|. ...+.+|++.|.+ ++ +..|+|+.+++|..+++.+
T Consensus 159 G~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~-~~--~i~~~r~~~~~p~~~~~el- 234 (430)
T TIGR01125 159 GKLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGK-VG--GIYWIRMHYLYPDELTDDV- 234 (430)
T ss_pred CCceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHh-cC--CccEEEEccCCcccCCHHH-
Confidence 9999999999999999999999999999999999998763 2578999999976 33 4679999999999887654
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 366 (622)
+..+.+.+++|+++|||+||+|+++|+.|+|+++.+++.++++.++++.|++.+.++||+||||||+++|++|++|+++
T Consensus 235 -l~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~PgET~e~~~~t~~fl~~ 313 (430)
T TIGR01125 235 -IDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFPGETEEDFQELLDFVEE 313 (430)
T ss_pred -HHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECCCCCHHHHHHHHHHHHh
Confidence 3334444457899999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred cCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecC-CceEEEeecCC
Q 007001 367 YKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAAD-GIHLVGHTKGY 442 (622)
Q Consensus 367 l~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~-~~~~~Grt~~y 442 (622)
++++.+++|+|+|+|||++++++ ++|.+++++|.++|.++++. .+++++++|++++||||+.+++ ++.+.||+++|
T Consensus 314 ~~~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vl~e~~~~~~~~~~~g~~~~~ 393 (430)
T TIGR01125 314 GQFDRLGAFTYSPEEGTDAFALPDQVPEEVKEERLERLMQLQQRISAKKNQEFVGKKIEVLIDGYEPETNLLLIGRTYGQ 393 (430)
T ss_pred cCCCEEeeeeccCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCCcEEEECccC
Confidence 99999999999999999999998 89999999999999999885 5778999999999999975433 23578999999
Q ss_pred eE-----EEECCC--CCCCCCEEEEEEEEEeeceEEE
Q 007001 443 VQ-----VLVPST--GNMLGTSALVKITSVGRWSVFG 472 (622)
Q Consensus 443 ~~-----V~v~~~--~~~~G~~v~V~I~~~~~~~l~G 472 (622)
.+ |+|+++ ...+|++++|+|+++.+++|.|
T Consensus 394 ~~~~~~~v~~~~~~~~~~~g~~~~v~i~~~~~~~l~g 430 (430)
T TIGR01125 394 APEVDGVVYVNGAKLNVKIGDILRVVITGTDEYDLWG 430 (430)
T ss_pred CcccCceEEEcCCcccCCCCCEEEEEEEEcccCeeeC
Confidence 97 788753 2247999999999999999986
No 23
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=100.00 E-value=6.3e-71 Score=602.48 Aligned_cols=392 Identities=32% Similarity=0.558 Sum_probs=334.3
Q ss_pred EEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCC--CcEEEEccccccchh
Q 007001 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD 133 (622)
Q Consensus 63 i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~--~~VVVgGC~aq~~pe 133 (622)
|+||||++|++|||.|.+.|.+.||+.++++++||+|+||| ++++.++++++|+.+ .+||||||||+..|+
T Consensus 1 ~~t~GC~~N~~ds~~~~~~l~~~g~~~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~~e 80 (414)
T TIGR01579 1 IETLGCRVNQYESESLKNQLIQKGYEVVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSNPK 80 (414)
T ss_pred CEeeCCCCCHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccCHH
Confidence 58999999999999999999999999999999999999998 345678888898877 469999999999997
Q ss_pred -hhccc-ccEEEcCCchHHHHHHHHHHhcCCceEee-----ccCCCCCCCCccccCCccEEEEEeCCCCCCCCCCcccCc
Q 007001 134 -LKELE-GVSIVGVQQIDRVVEVVEETLKGHEVRLL-----HRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTKH 206 (622)
Q Consensus 134 -~~~~~-~d~VvG~~~~~~l~ell~~~~~g~~~~~~-----~~~~~~~~~lp~~r~~~~~a~I~isrGC~~~CsFC~ip~ 206 (622)
+.+++ +|.|+|++++..|+++++....+...... ....+|.+++... .....++|+++||||++|+||.+|.
T Consensus 81 e~~~~~~vD~vv~~e~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~i~isrGCp~~CsfC~~~~ 159 (414)
T TIGR01579 81 ELADLKDVDLVLGNKEKDKINKLLSLGLKTSFYRVKNKNFSREKGVPEYEEVAF-EGHTRAFIKVQDGCNFFCSYCIIPF 159 (414)
T ss_pred HHhcCCCCcEEECCCCHHHHHHHHHHHhcccCcccccccccccccccccccccc-CCCeEEEEEeccCcCCCCCCCceee
Confidence 44554 57899999999999999865433221111 1111122111111 1246789999999999999999999
Q ss_pred cCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHH
Q 007001 207 ARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284 (622)
Q Consensus 207 ~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~ 284 (622)
.+|++|+||+++|++|++.+.+.|+++|+|+|+|++.|+.|. ...+.+|++.+.+ ++ +..|+|+++++|..+++.
T Consensus 160 ~~g~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~-~~--~~~~ir~~~~~p~~~~~e 236 (414)
T TIGR01579 160 ARGRSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQ-IP--GIKRIRLSSIDPEDIDEE 236 (414)
T ss_pred ecCCCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhc-CC--CCcEEEEeCCChhhCCHH
Confidence 999999999999999999999999999999999999998764 3578999999875 44 678999999999887765
Q ss_pred HHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Q 007001 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 364 (622)
Q Consensus 285 l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl 364 (622)
+ +..|.+.+++|+++|+|+||+|+++|+.|||+++.+++.++++.+++.+||+.+.+|||+||||||++||++|++|+
T Consensus 237 l--l~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~IvG~PgET~ed~~~tl~~i 314 (414)
T TIGR01579 237 L--LEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDIIVGFPGESEEDFQETLRMV 314 (414)
T ss_pred H--HHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeEEEECCCCCHHHHHHHHHHH
Confidence 4 44344455679999999999999999999999999999999999999778999999999999999999999999999
Q ss_pred HhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCceEEEeecC
Q 007001 365 KEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTKG 441 (622)
Q Consensus 365 ~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~ 441 (622)
++++++.+++|+|+|+||||+++++ ++|..++++|.++|+++++. .+++++++|++++||||+.. ++ .+.||+++
T Consensus 315 ~~~~~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~~~-~~-~~~g~~~~ 392 (414)
T TIGR01579 315 KEIEFSHLHIFPYSARPGTPASTMKDKVPETIKKERVKRLKELAEKNYQEFLKKNIGKELEVLVEKEK-AG-VLTGYSEY 392 (414)
T ss_pred HhCCCCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCC-CC-eeEEECCC
Confidence 9999999999999999999999998 89999999999999999986 57889999999999999742 33 67899999
Q ss_pred CeEEEECCC-CCCCCCEEEEEE
Q 007001 442 YVQVLVPST-GNMLGTSALVKI 462 (622)
Q Consensus 442 y~~V~v~~~-~~~~G~~v~V~I 462 (622)
|.+|+|+.+ ....|++++|+|
T Consensus 393 ~~~v~~~~~~~~~~g~~~~v~i 414 (414)
T TIGR01579 393 YLKVKVESDKGVAAGELISVRI 414 (414)
T ss_pred CcEEEeCCCCccCCCCEEEEEC
Confidence 999999754 235799999986
No 24
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=100.00 E-value=2.6e-70 Score=601.53 Aligned_cols=410 Identities=28% Similarity=0.460 Sum_probs=345.1
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCC----CcEEEEcccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAK----KPLVVAGCVP 128 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~----~~VVVgGC~a 128 (622)
+|||+||||++|++|||.|.+.|.+.||++++++++||+||||| ++++++.++++++.+ .+|+|+||+|
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~~l~~~G~~~~~~~~~ADi~iiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~v~v~GC~a 81 (440)
T PRK14334 2 KAHIITYGCQMNEYDTHLVESELVSLGAEIVDSVDEADFVLVNTCAVRGKPVEKVRSLLGELRKEKAQRPLVVGMMGCLA 81 (440)
T ss_pred eEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCcccCCEEEEeccceeehHHHHHHHHHHHHHhhCcCCCcEEEEEcchh
Confidence 79999999999999999999999999999999999999999999 666777777776433 2488999999
Q ss_pred ccch-h-hhcc-cccEEEcCCchHHHHHHHHHHhcCCceEeeccCCCCCCCCccccCCccEEEEEeCCCCCCCCCCcccC
Q 007001 129 QGSR-D-LKEL-EGVSIVGVQQIDRVVEVVEETLKGHEVRLLHRKKLPALDLPKVRRNKFVEILPINVGCLGACTYCKTK 205 (622)
Q Consensus 129 q~~p-e-~~~~-~~d~VvG~~~~~~l~ell~~~~~g~~~~~~~~~~~~~~~lp~~r~~~~~a~I~isrGC~~~CsFC~ip 205 (622)
|.++ + +... .+|.|+|++++..+++++.... ............. .+|........++|+|++|||++|+||.+|
T Consensus 82 ~~~~~~~l~~~~~vd~v~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~isrGC~~~CsfC~~p 158 (440)
T PRK14334 82 QLEEGQQMARKFGVDVLLGPGALTDIGKALEANE--RFWGLQFKDELHD-HIPPPPQGKLSAHLTIMRGCNHHCTYCIVP 158 (440)
T ss_pred ccCChhHHhcCCCCCEEECCCCHHHHHHHHHhhc--ccccccccccccc-ccccccCCCeEEEEEeccCCCCCCcCCCcc
Confidence 9984 3 4444 5688999999999998876431 1000000010100 122223346789999999999999999999
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH
Q 007001 206 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE 283 (622)
Q Consensus 206 ~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~ 283 (622)
..+|+.+++++++|++|++.+.+.|+++|+|+|+|++.||.+.. .++.+|++.+.+ + +..++++.+.+|..+++
T Consensus 159 ~~~g~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~-~---~i~~ir~~~~~p~~i~~ 234 (440)
T PRK14334 159 TTRGPEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGA-S---GIPRVKFTTSHPMNFTD 234 (440)
T ss_pred hhcCCCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHh-c---CCcEEEEccCCcccCCH
Confidence 99999999999999999999999999999999999999987643 468899988864 3 45689998889988877
Q ss_pred HHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Q 007001 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNL 363 (622)
Q Consensus 284 ~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~f 363 (622)
.+ +..+.+.+.+|+++|||+||+|+++|+.|+|+|+.+++.++++.++++.|++.+.+|||+||||||++||++|++|
T Consensus 235 el--l~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgEt~ed~~~tl~~ 312 (440)
T PRK14334 235 DV--IAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTDIIVGFPGETEEDFQETLSL 312 (440)
T ss_pred HH--HHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCCCHHHHHHHHHH
Confidence 54 4444455557999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCCcEEEEEEEEEecCCceEEEeec
Q 007001 364 IKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEGRVERIWITEIAADGIHLVGHTK 440 (622)
Q Consensus 364 l~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~ 440 (622)
+.+++++.+++|.|+|+||||+++++ ++|++++++|+++|+++++. .+++++++|++.+||||+.+++++.++|||+
T Consensus 313 i~~l~~~~i~~f~ysp~pGT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve~~~~~~~~~~g~t~ 392 (440)
T PRK14334 313 YDEVGYDSAYMFIYSPRPGTPSYKHFQDLPREVKTERLQRLIEKQKEWSYRRNARWVGRTQEVLVRGDAKDAGFLEGHTR 392 (440)
T ss_pred HHhcCCCEeeeeEeeCCCCChhHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEeccCCCCeEEEECC
Confidence 99999999999999999999999986 89999999999999999996 5788999999999999975433346889999
Q ss_pred CCeEEEECCCCC-CCCCEEEEEEEEEeeceEEEEEEeecc
Q 007001 441 GYVQVLVPSTGN-MLGTSALVKITSVGRWSVFGEVIKILN 479 (622)
Q Consensus 441 ~y~~V~v~~~~~-~~G~~v~V~I~~~~~~~l~G~~v~~~~ 479 (622)
+|.+|+|+.+.. ..| +++|+|+++.+++|.|+++...-
T Consensus 393 ~~~~v~~~~~~~~~~g-~~~v~i~~~~~~~l~g~~~~~~~ 431 (440)
T PRK14334 393 GNHPVLVPASQAPGPG-LYQVRIKQATPHMLYGEVVGAEA 431 (440)
T ss_pred CCcEEEEcCCCcccCc-EEEEEEEEccCceEEEEEecCCC
Confidence 999999974322 345 99999999999999999887643
No 25
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-56 Score=463.26 Aligned_cols=418 Identities=25% Similarity=0.420 Sum_probs=349.6
Q ss_pred CCCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHH---hcC-----CC
Q 007001 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKC---KSA-----KK 119 (622)
Q Consensus 55 ~~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~---k~~-----~~ 119 (622)
.....|||++||||+||..|+|....+|.+.||-.++.+++||+|+++| ++.+.+-++.+ |-. ..
T Consensus 69 ~g~gRkv~~etYGCQMNvnD~Eiv~sIl~~~Gy~~~~~~e~Advill~TCsiRe~AEq~iwnrL~~~ra~k~~~~~~rpl 148 (552)
T KOG2492|consen 69 LGNGRKVYLETYGCQMNVNDTEIVWSILKKSGYLRSDKPEEADVILLVTCSIREGAEQRIWNRLKLLRALKVNRPTSRPL 148 (552)
T ss_pred ccCCcEEEEEEeeeeeccchHHHHHHHHHhcCccccCCcccCcEEEEEEeeccccHHHHHHHHHHHHHHhhccCccCCCc
Confidence 3445789999999999999999999999999999999999999999999 44444433322 211 12
Q ss_pred cEEEEccccccchh-h-h-cccccEEEcCCchHHHHHHHHHHhcCCce-E--eeccCCCCCCCCccccCCccEEEEEeCC
Q 007001 120 PLVVAGCVPQGSRD-L-K-ELEGVSIVGVQQIDRVVEVVEETLKGHEV-R--LLHRKKLPALDLPKVRRNKFVEILPINV 193 (622)
Q Consensus 120 ~VVVgGC~aq~~pe-~-~-~~~~d~VvG~~~~~~l~ell~~~~~g~~~-~--~~~~~~~~~~~lp~~r~~~~~a~I~isr 193 (622)
+|.|-||||++..+ + . +-.+|.|-|++.+.++|.+|.....|... . +.....+.+...-+.......|||.|+|
T Consensus 149 ~v~vLGCMAERlk~~iL~~~kmVdivaGPDaYrDLPrll~~~~~g~~~in~~Lsldetyadv~pvr~~~~s~tAFvSiMR 228 (552)
T KOG2492|consen 149 RVGVLGCMAERLKEKILEREKMVDIVAGPDAYRDLPRLLAVARGGQNGINVLLSLDETYADVQPVRVSSSSTTAFVSIMR 228 (552)
T ss_pred eEEeehhhHHHHHHHHhhhhhceeeeeCchhhhhhHHHHHHHhccCCceeEEEeccchhcccceeeccCccchhHHHHHh
Confidence 57888999999875 3 3 33578899999999999999877666432 1 1111222222211223456789999999
Q ss_pred CCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-------------------------
Q 007001 194 GCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------------------------- 248 (622)
Q Consensus 194 GC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~------------------------- 248 (622)
||++-|+||++|+.||+.|+||++.|++|++.|.+.|++|+.|+|||+++|..+.
T Consensus 229 GCdNMCtyCiVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K~g 308 (552)
T KOG2492|consen 229 GCDNMCTYCIVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPKQG 308 (552)
T ss_pred ccccccceEEEeccCCcccCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCCCceeeecccCC
Confidence 9999999999999999999999999999999999999999999999999996531
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHH
Q 007001 249 GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 328 (622)
Q Consensus 249 ~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~ 328 (622)
+..|..||+++....| ..++||.+-||.++.+++ +.-+...+.+|+.+|+|.||||.++|+.|.|||+.+.|.+.
T Consensus 309 Gl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdev--l~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~l 383 (552)
T KOG2492|consen 309 GLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEV--LELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLEL 383 (552)
T ss_pred CccHHHHHHHHhhhCc---ceEEEecCCCCCCChHHH--HHHHHhCcchhheeeccccCCchHHHHHHHccCChHhhhhH
Confidence 2369999999988764 578899888998888765 33344567899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc-CC-CCCHHHHHHHHHHHHHH
Q 007001 329 VDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR-MK-KVPSAVVKKRSRELTSV 406 (622)
Q Consensus 329 I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~-~~-~v~~~~~k~R~~~L~~l 406 (622)
+..+++.+||+.+.+|||.||-|||++|+++|+.++++.+.+.++.|.|+-+.+|.+|. +. ++|++++.+|+.+|..+
T Consensus 384 v~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~Li~~ 463 (552)
T KOG2492|consen 384 VAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFELITF 463 (552)
T ss_pred HHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999985 44 89999999999999999
Q ss_pred HHH--hhhhccCCCcEEEEEEEEEecC-CceEEEeecCCeEEEECC--------C----CCCCCCEEEEEEEEEeeceEE
Q 007001 407 FEA--FTPYLGMEGRVERIWITEIAAD-GIHLVGHTKGYVQVLVPS--------T----GNMLGTSALVKITSVGRWSVF 471 (622)
Q Consensus 407 ~~~--~~~~~~~vG~~~~Vlve~~~~~-~~~~~Grt~~y~~V~v~~--------~----~~~~G~~v~V~I~~~~~~~l~ 471 (622)
|+. ...++.++|.+.-|++|++++. ...++||++.|..|.|+. + ...+|+++.|+|+.+....|+
T Consensus 464 Fre~A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~d~~~kv~f~~a~~~~~~~~~~r~~~~igd~~~v~i~~a~~~~l~ 543 (552)
T KOG2492|consen 464 FREEAIKFNDGLVGCTQLVLVEGKSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAGPGDYVLVKITDSNSQTLK 543 (552)
T ss_pred HHHHHHHHhccCccccceeeeechhhhhHHHHhcccCCCeEEEechHhhcCCCCCCceeccCcccceeeeeehhhhhhhh
Confidence 995 4688999999999999998643 236789999999999872 1 125799999999999999999
Q ss_pred EEEEee
Q 007001 472 GEVIKI 477 (622)
Q Consensus 472 G~~v~~ 477 (622)
|..+..
T Consensus 544 g~~lai 549 (552)
T KOG2492|consen 544 GQLLGQ 549 (552)
T ss_pred cchhhc
Confidence 887654
No 26
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=100.00 E-value=8.2e-35 Score=324.89 Aligned_cols=302 Identities=19% Similarity=0.237 Sum_probs=224.7
Q ss_pred HHHHHHHHHhcCC-e--eeCC---------------CCCCcEEEEec----hHHHHHHHHHHhcC--CCcEEEEcccccc
Q 007001 75 SEYMAGQLSAFGY-A--LTDN---------------SEEADIWLINT----QSAMDTLIAKCKSA--KKPLVVAGCVPQG 130 (622)
Q Consensus 75 se~m~~~L~~~G~-~--~v~~---------------~~~ADlviINT----~~~~~~ii~~~k~~--~~~VVVgGC~aq~ 130 (622)
-.++++.|++.|| + ++|. ...+|+|.|++ .....++++.+|+. +.+||+||+||+.
T Consensus 25 l~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~ 104 (497)
T TIGR02026 25 VAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTF 104 (497)
T ss_pred HHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCc
Confidence 4688888888884 3 2221 13589999988 44556777777765 5689999999999
Q ss_pred chh--hhcc-cccE-EEcCCchHHHHHHHHHHhcCC---ceE-----ee--------c--cCCCCCCC-C-cccc-----
Q 007001 131 SRD--LKEL-EGVS-IVGVQQIDRVVEVVEETLKGH---EVR-----LL--------H--RKKLPALD-L-PKVR----- 181 (622)
Q Consensus 131 ~pe--~~~~-~~d~-VvG~~~~~~l~ell~~~~~g~---~~~-----~~--------~--~~~~~~~~-l-p~~r----- 181 (622)
.|+ +... .+|+ |+|+++ ..++++++....|. ... .+ . .....+++ + |...
T Consensus 105 ~~~~~l~~~p~vD~Vv~GEGE-~~~~~Ll~~l~~g~~~~~~~~I~Gi~y~~~g~i~~~~~~~~i~dLd~~~P~~~l~~~~ 183 (497)
T TIGR02026 105 MFHQVLTEAPWIDFIVRGEGE-ETVVKLIAALENHNFAEDRNKVDGIAFLRDQEIVETLAAPMIQDLDVYRPDWELVDWK 183 (497)
T ss_pred CHHHHHhcCCCccEEEeCCcH-HHHHHHHHHHHcCCCCCchhhCCceEEEeCCEEEeCCCCCCccccccCCCCcccCchh
Confidence 886 3344 4686 556665 78999998876664 110 00 0 00111121 1 1110
Q ss_pred C------CccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHH
Q 007001 182 R------NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPI 254 (622)
Q Consensus 182 ~------~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~-~GvkeI~L~g~d~~~yg~d~~~~l~e 254 (622)
. ....+.+++|||||++|+||..+...+++|.++++.|++||+.+.+ .|++.|.|.|++++... ..+.+
T Consensus 184 ~y~~~~~~~~~~~i~tSRGCp~~C~FC~~~~~~~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~----~~~~~ 259 (497)
T TIGR02026 184 KYIYYPLGVRVAVPNFARGCPFTCNFCSQWKFWRRYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINR----KKFQE 259 (497)
T ss_pred hcccccCCCceeeeeccCCCCCCCCCCCCCCCCceeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCH----HHHHH
Confidence 0 1224568999999999999999877788999999999999999976 69999999988766432 24678
Q ss_pred HHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007001 255 LLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334 (622)
Q Consensus 255 LL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~ 334 (622)
++++|.+.-+ .+..|. .+++++.+... +++.++++..+ |.++.+|+||+|+++|+.|+|+++.+++.++++.+++
T Consensus 260 l~~~l~~~~~-l~i~w~--~~~r~~~i~~d-~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~ 334 (497)
T TIGR02026 260 FCEEIIARNP-ISVTWG--INTRVTDIVRD-ADILHLYRRAG-LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQ 334 (497)
T ss_pred HHHHHHhcCC-CCeEEE--EecccccccCC-HHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8888875311 012221 23455544221 23445555555 7999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 335 ~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
+ ||.+.++||+|+||||.+++++|++++.+++++.++++.|+|+||||+++.
T Consensus 335 ~--Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PGT~l~~~ 386 (497)
T TIGR02026 335 H--NILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPFTSLFGE 386 (497)
T ss_pred C--CCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCCcHHHHH
Confidence 9 999999999999999999999999999999999999999999999999863
No 27
>PRK00955 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=315.32 Aligned_cols=200 Identities=21% Similarity=0.323 Sum_probs=160.9
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCCc-CCCCHHHHHHHHHHHHHC-CCcEEE--EeecCCCCCCCCc------------
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIAD-GVKEVW--LSSEDTGAYGRDI------------ 248 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~~-rsr~~e~Iv~Ei~~L~~~-GvkeI~--L~g~d~~~yg~d~------------ 248 (622)
..++|.++|||+++|+||+++.++|+. +||++++|++|++.+.+. |+++++ +.|++.+.||.+.
T Consensus 292 i~~sI~i~RGC~g~CSFCaIp~~rGr~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~c~~~ 371 (620)
T PRK00955 292 VKFSITSHRGCFGGCSFCAITFHQGRFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGACKNK 371 (620)
T ss_pred EEEEEEeeCCCCCCCCCCCeecccCCcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccccccc
Confidence 357899999999999999999999985 999999999999999987 898875 6678899998420
Q ss_pred --------------CCCHHHHHHHHHHhCCCCCceeEEEee-cCCcchhH-HH-HHHHHHHhCCCCceeecccCCCCCHH
Q 007001 249 --------------GVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILE-HL-KEIAEVLRHPCVYSFLHVPVQSGSDA 311 (622)
Q Consensus 249 --------------~~~l~eLL~~l~~~l~~~~~~~iri~~-~~p~~i~~-~l-~el~~l~~~~~v~~~l~IGlQSgsd~ 311 (622)
...+.+||++|.+ ++ +..|+++++ ++.+.+.. .. +-+.++... .++.+||||+||+|++
T Consensus 372 ~clfp~~c~nl~~d~~~l~~LLr~l~~-l~--gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~-~vsg~L~IapESgSd~ 447 (620)
T PRK00955 372 QCLFPKPCKNLDVDHKEYLELLRKVRK-LP--GVKKVFIRSGIRYDYLLHDKNDEFFEELCEH-HVSGQLKVAPEHISDR 447 (620)
T ss_pred ccccCccccccCcChHHHHHHHHHHhc-cC--CceEEEeecceeccccccCCcHHHHHHHHHH-hcCCCceeCcCCCChH
Confidence 1258899999975 55 677877776 34433211 00 013333333 3467999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCC----CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc
Q 007001 312 VLSAMNREYTLSDFRTVVDTLIELVPG----MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387 (622)
Q Consensus 312 vLk~MnR~~t~e~~~~~I~~lr~~~pg----i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~ 387 (622)
+|+.|+|+ +.+.+.+.++.+++..+. ..+.++||+||||||++||++|++|+++++++.++++.|+|+|||+++.
T Consensus 448 VLk~M~K~-~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PGT~At~ 526 (620)
T PRK00955 448 VLKLMGKP-SREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPGTLSTT 526 (620)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCCcchhh
Confidence 99999998 667777777666665544 3599999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007001 388 MK 389 (622)
Q Consensus 388 ~~ 389 (622)
|.
T Consensus 527 My 528 (620)
T PRK00955 527 MY 528 (620)
T ss_pred cc
Confidence 85
No 28
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=100.00 E-value=1.5e-33 Score=313.08 Aligned_cols=276 Identities=20% Similarity=0.260 Sum_probs=201.4
Q ss_pred CCCcEEEEec----hHHHHHHHHHHhcCC--CcEEEEccccccchh--hhcc-cccEE-EcCCchHHHHHHHHHHhcCCc
Q 007001 94 EEADIWLINT----QSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD--LKEL-EGVSI-VGVQQIDRVVEVVEETLKGHE 163 (622)
Q Consensus 94 ~~ADlviINT----~~~~~~ii~~~k~~~--~~VVVgGC~aq~~pe--~~~~-~~d~V-vG~~~~~~l~ell~~~~~g~~ 163 (622)
.++|+|+|++ .....++++.+|+.+ .+||+||+|++..|+ +... .+|.| .|+++ ..++++++.......
T Consensus 67 ~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE-~~l~~l~~g~~~~~i 145 (472)
T TIGR03471 67 KDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFD-YTIKEVAEGKPLAEI 145 (472)
T ss_pred cCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchH-HHHHHHHcCCChhcC
Confidence 3589999988 445667788888764 579999999999997 3333 46764 55555 678887753210000
Q ss_pred ----eE------eecc-C-CCCCCC-Ccc----cc------------CCccEEEEEeCCCCCCCCCCcccCccC-C-CcC
Q 007001 164 ----VR------LLHR-K-KLPALD-LPK----VR------------RNKFVEILPINVGCLGACTYCKTKHAR-G-HLG 212 (622)
Q Consensus 164 ----~~------~~~~-~-~~~~~~-lp~----~r------------~~~~~a~I~isrGC~~~CsFC~ip~~r-G-~~r 212 (622)
.+ .... . ...+++ +|. ++ .....+.|.+|||||++|+||.++... | ++|
T Consensus 146 ~Gi~~r~~~g~~~~~~~~~~~~dLd~lP~p~p~~~~~l~~~~y~~~~~~~~~~~i~tsRGCp~~C~FC~~~~~~~g~~~r 225 (472)
T TIGR03471 146 DGLSYRGKDGKIVHNPDRPMIEDMDALPFVAPVYKRDLDIERYFIGYLKHPYISLYTGRGCPSKCTFCLWPQTVGGHRYR 225 (472)
T ss_pred CceEEEcCCCeEEeCCCCCCccchhhCCCCchhhhccCCHHHcccccccCceEEEEecCCCCCCCCCCCCCccCCCCceE
Confidence 00 0000 0 011111 111 00 012346789999999999999987543 4 589
Q ss_pred CCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 213 SYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~--GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
.++++.|++|++.+.+. |+++|+|.|++++.. . ..+.+|++.+.+ . +..|... ... .+++ ++.+
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~-~---~~~~~l~~~l~~-~---~i~~~~~--~~~-~~~~---e~l~ 291 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEVREFFFDDDTFTDD-K---PRAEEIARKLGP-L---GVTWSCN--ARA-NVDY---ETLK 291 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCC-H---HHHHHHHHHHhh-c---CceEEEE--ecC-CCCH---HHHH
Confidence 99999999999999885 889999987665432 2 245677777754 2 3334322 222 2333 2344
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d 370 (622)
.++..+ |.++++|+||+|+++|+.|+|+++.+++.++++.++++ |+.+.++||+|+||||.+++++|++++.+++++
T Consensus 292 ~l~~aG-~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~--Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~ 368 (472)
T TIGR03471 292 VMKENG-LRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKL--GIKVHGTFILGLPGETRETIRKTIDFAKELNPH 368 (472)
T ss_pred HHHHcC-CCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC--CCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 444444 89999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eEEEEEeeeCCCCcccc
Q 007001 371 QVHISQFYPRPGTPAAR 387 (622)
Q Consensus 371 ~v~i~~ysP~PGTpa~~ 387 (622)
.++++.++|+||||+++
T Consensus 369 ~~~~~~l~P~PGT~l~~ 385 (472)
T TIGR03471 369 TIQVSLAAPYPGTELYD 385 (472)
T ss_pred ceeeeecccCCCcHHHH
Confidence 99999999999999975
No 29
>PRK01254 hypothetical protein; Provisional
Probab=99.98 E-value=1.9e-31 Score=296.47 Aligned_cols=200 Identities=20% Similarity=0.306 Sum_probs=174.4
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCC-cCCCCHHHHHHHHHHHHHC--CCcEEE--EeecCCCCCCC---C---------
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD--GVKEVW--LSSEDTGAYGR---D--------- 247 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~Ei~~L~~~--GvkeI~--L~g~d~~~yg~---d--------- 247 (622)
..++|+|+|||+++|+||+++..+|+ ++||++++|++|++.+.+. |+++++ |+|++.+.||. |
T Consensus 372 i~~sV~i~RGC~g~CSFCaI~~hqGr~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~ 451 (707)
T PRK01254 372 IRFSVNIMRGCFGGCSFCSITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRR 451 (707)
T ss_pred eEEEEEEccCCCCCCCccccccccCCeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCcccccccccccccccccccc
Confidence 45899999999999999999999998 7999999999999999974 999999 99999999996 2
Q ss_pred -----------cC---CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHH
Q 007001 248 -----------IG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL 313 (622)
Q Consensus 248 -----------~~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vL 313 (622)
.. ..+.+||++|.+ ++ ++.++++.|.+|.++....+++.+.+....++.+|+||+||+|+++|
T Consensus 452 ~~Cl~P~~C~nL~~dh~~l~eLLrkLr~-Ip--GVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VL 528 (707)
T PRK01254 452 LSCVYPDICPHLDTDHEPTINLYRRARD-LK--GIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPL 528 (707)
T ss_pred ccccCcccccccCCCHHHHHHHHHHHHh-CC--CceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHH
Confidence 11 258899999975 66 88899999998877642212333333335778999999999999999
Q ss_pred HhhcCC--CCHHHHHHHHHHHHHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCC---CCcccc
Q 007001 314 SAMNRE--YTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP---GTPAAR 387 (622)
Q Consensus 314 k~MnR~--~t~e~~~~~I~~lr~~~p-gi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~P---GTpa~~ 387 (622)
+.|+|+ ++.++|.+.++++++.+| ++.+.++||+||||||++||+++++|+++++++...+..|+|.| ||.+|.
T Consensus 529 k~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP~t~~T~MYy 608 (707)
T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSPMANATTMYY 608 (707)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCCCcCchHHHh
Confidence 999998 799999999999999988 68999999999999999999999999999999999999999999 666654
No 30
>PRK05481 lipoyl synthase; Provisional
Probab=99.97 E-value=1.9e-30 Score=270.69 Aligned_cols=211 Identities=15% Similarity=0.225 Sum_probs=174.5
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
...+||.+++||+++|+||++|..++ +++++++|+++++.+.+.|+++|+|+|+|...+.......+.+|++.|.+..
T Consensus 52 ~~~~fi~is~GC~~~C~FC~i~~~r~--~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~ 129 (289)
T PRK05481 52 GTATFMILGDICTRRCPFCDVATGRP--LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELN 129 (289)
T ss_pred CeEEEEEecccccCCCCCceeCCCCC--CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhC
Confidence 56789999999999999999998775 7899999999999999999999999999865432100136889999998755
Q ss_pred CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 007001 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343 (622)
Q Consensus 264 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~t 343 (622)
+ +. ++++.+.+|....+ ++..++..+ ...+....++ ++++|+.|+|+++.++++++++.+++.+||+.+.+
T Consensus 130 p--~i-rI~~l~~~~~~~~e---~L~~l~~ag--~~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi~~~t 200 (289)
T PRK05481 130 P--GT-TIEVLIPDFRGRMD---ALLTVLDAR--PDVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGIPTKS 200 (289)
T ss_pred C--Cc-EEEEEccCCCCCHH---HHHHHHhcC--cceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeEee
Confidence 4 33 56665555543333 344454432 3344444565 58999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccc-cCCCCCHHHHHHHHHHHHHHHHHhh
Q 007001 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA-RMKKVPSAVVKKRSRELTSVFEAFT 411 (622)
Q Consensus 344 d~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~-~~~~v~~~~~k~R~~~L~~l~~~~~ 411 (622)
|+|+|| |||++||.+|++++++++++.+++|+|+| |++ .| +||+.++++|+++|++++.+..
T Consensus 201 ~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~----pa~k~~-~v~~~~k~~r~~~l~~~~~~i~ 263 (289)
T PRK05481 201 GLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQ----PSRKHL-PVERYVTPEEFDEYKEIALELG 263 (289)
T ss_pred eeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCC----CccccC-CCCCcCCHHHHHHHHHHHHHcC
Confidence 999999 99999999999999999999999999999 888 66 8999999999999999998643
No 31
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.95 E-value=2.1e-25 Score=235.70 Aligned_cols=289 Identities=21% Similarity=0.270 Sum_probs=219.7
Q ss_pred ccEEEEEeCCCCCCC----CCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeec-CCCCCCCCcC---------
Q 007001 184 KFVEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDIG--------- 249 (622)
Q Consensus 184 ~~~a~I~isrGC~~~----CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~-d~~~yg~d~~--------- 249 (622)
...+-|+++|||++. ||||..|.. |...+|++|+|++|++.|++.|++.+.|.-| |+++|+.+..
T Consensus 182 ~vi~EiETyRGC~r~~~ggCSFCtEp~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnP 260 (560)
T COG1031 182 YVICEIETYRGCPRRVSGGCSFCTEPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNP 260 (560)
T ss_pred eEEEEEeeccCCcccccCCCccccCcCc-CCcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCCH
Confidence 457889999999987 999999975 9999999999999999999999999999865 7888876521
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHH----hCCCCceeecccCCCCCHHHHHhhcCCCCHHHH
Q 007001 250 VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL----RHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDF 325 (622)
Q Consensus 250 ~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~----~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~ 325 (622)
+.+.+|++.+...-| +...+.+...||..+.++.++-.+++ +...--+-..+|+||++++|.+.-|=..|.|++
T Consensus 261 ealekL~~Gir~~AP--~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEv 338 (560)
T COG1031 261 EALEKLFRGIRNVAP--NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEV 338 (560)
T ss_pred HHHHHHHHHHHhhCC--CCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHH
Confidence 246777888877666 77889999999998876554433332 222223578899999999999999999999999
Q ss_pred HHHHHHHHHh--------CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEEeeeCCCCccccCCCCC
Q 007001 326 RTVVDTLIEL--------VPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVP 392 (622)
Q Consensus 326 ~~~I~~lr~~--------~pgi~i~td~IvGfPGETeedf~eTl~fl~el-----~~d~v~i~~ysP~PGTpa~~~~~v~ 392 (622)
+++|+.+.+. +|-+....+||+|+||||.|+|+.+.+|++++ .+.+++|-+..++||||++.+...-
T Consensus 339 l~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~~~~ 418 (560)
T COG1031 339 LEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERGKKK 418 (560)
T ss_pred HHHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhhhhHH
Confidence 9999999986 45567788999999999999999999999987 3578999999999999999653211
Q ss_pred HHHHHHHHHHHHHHHHH---hhhhccC--CCcEE-EEEEEEEecCCceEEEeecCCeEEEECCC-CCCCCCEEEEEEEEE
Q 007001 393 SAVVKKRSRELTSVFEA---FTPYLGM--EGRVE-RIWITEIAADGIHLVGHTKGYVQVLVPST-GNMLGTSALVKITSV 465 (622)
Q Consensus 393 ~~~~k~R~~~L~~l~~~---~~~~~~~--vG~~~-~Vlve~~~~~~~~~~Grt~~y~~V~v~~~-~~~~G~~v~V~I~~~ 465 (622)
.+..++++.......++ ...+++. .|+++ +|.+|.. ++...+||+.+-.++++--+ ...+|++++|.|++.
T Consensus 419 ~~khk~~~~~fk~~VRe~iD~~MLkrVvP~GTvLrdv~vE~~--~~~~tfgRQ~GSYPllvgi~~~~~~g~~~Dv~vvdh 496 (560)
T COG1031 419 AEKHKKLFAAFKRKVREEIDLPMLKRVVPKGTVLRDVRVEVY--EGGLTFGRQLGSYPLLVGIPGRLELGRYVDVVVVDH 496 (560)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHhcCCCCceeeeEEEEEe--cCCceeecccCCcceEeeccccccCCceEEEEEecc
Confidence 11112222222222222 1344544 37777 5777764 23356799998765554322 245799999999999
Q ss_pred eeceEEEEEEee
Q 007001 466 GRWSVFGEVIKI 477 (622)
Q Consensus 466 ~~~~l~G~~v~~ 477 (622)
+..|+.|.+...
T Consensus 497 G~RSVt~ip~pl 508 (560)
T COG1031 497 GARSVTAIPVPL 508 (560)
T ss_pred Ccceeeeccccc
Confidence 999999987654
No 32
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.94 E-value=1.8e-25 Score=246.84 Aligned_cols=283 Identities=24% Similarity=0.389 Sum_probs=200.7
Q ss_pred HHHHHHhcC--CCcEEEEccccccchh-hhcc-cccE-EEcCCchHHHHHHHHHHhcCCce--------E----e-e---
Q 007001 109 TLIAKCKSA--KKPLVVAGCVPQGSRD-LKEL-EGVS-IVGVQQIDRVVEVVEETLKGHEV--------R----L-L--- 167 (622)
Q Consensus 109 ~ii~~~k~~--~~~VVVgGC~aq~~pe-~~~~-~~d~-VvG~~~~~~l~ell~~~~~g~~~--------~----~-~--- 167 (622)
.++...+.. ++.|++||.+++..++ +... +.|. ++|+++ ..++++++....+... + . .
T Consensus 91 ~~~~~~~~~~~~~~v~~GG~~~t~~~~~~~~~~~~D~iv~GeGE-~~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~ 169 (490)
T COG1032 91 KLVAKARGRRDKPLVVVGGPEATENPEPLLDFGPADIIVIGEGE-ETLPELLEALEEGEDDPRVPGLALPSFEEIVYDQD 169 (490)
T ss_pred HHHHHHhcccCCCeEEecCCCcCCCcHHHHhhcCCCEEEEcCch-HHHHHHHHHHhccccccccCccccCChhhcccccc
Confidence 344444433 2458999999998875 4433 3576 566665 6799999876554321 0 0 0
Q ss_pred -ccCCCCCCCC---------ccccC-CccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEE
Q 007001 168 -HRKKLPALDL---------PKVRR-NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWL 236 (622)
Q Consensus 168 -~~~~~~~~~l---------p~~r~-~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L 236 (622)
+..+.+...+ |.... .....+|+++||||++|+||.++... ++|+++++.+++|++.+++.|.+.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ve~~RGCp~~C~FC~~~~~~-~~r~~~~~~v~~ei~~~~~~~~~~~~~ 248 (490)
T COG1032 170 LDDVPIPAYDLVDDHKRDDLPPYGAGENRAFSVETSRGCPRGCRFCSITKHF-KYRRRRPERVVEEIKELIEEGGKRVVF 248 (490)
T ss_pred cccCCccceeecccccccccCCcccccceEEEEEeccCCCCCCCCCCCcccc-cccCCCHHHHHHHHHHHHHHhhhcCcc
Confidence 0111122211 11111 22357999999999999999998766 789999999999999999999999887
Q ss_pred eecCCCCCCCCc---CCCHHHHHHHHHHhCCCCCceeEEE--eecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHH
Q 007001 237 SSEDTGAYGRDI---GVNLPILLNAIVAELPPDGSTMLRI--GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 311 (622)
Q Consensus 237 ~g~d~~~yg~d~---~~~l~eLL~~l~~~l~~~~~~~iri--~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~ 311 (622)
..+|.+.|+... ...+..+...+.+... .....+.+ ..+.++.+++ +++..+++..+ +..+.+|+||+|++
T Consensus 249 ~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~r~d~~~~--~~~~~~~~~~g-~~~~~iG~Esgs~~ 324 (490)
T COG1032 249 FVDDIFLYGSPALNDEKRFELLSLELIERGL-RKGCRVHISAPSLRADTVTD--EELLKLLREAG-LRRVYIGIESGSEE 324 (490)
T ss_pred cccceeecCCccccchhhcccchHHHHHHhc-ccCceeeeeccccCchhcCH--HHHHHHHhhCC-CcceEEeccCCCHH
Confidence 778888888752 1222333323333211 01222333 2345665552 23555555555 78999999999999
Q ss_pred HHHhhcCCCCHHHHHH-HHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHH---HHHHHhcCCC-eEEEEEeeeCCCCccc
Q 007001 312 VLSAMNREYTLSDFRT-VVDTLIELVPGMQIATDIICGFPGETDEDFNQT---VNLIKEYKFP-QVHISQFYPRPGTPAA 386 (622)
Q Consensus 312 vLk~MnR~~t~e~~~~-~I~~lr~~~pgi~i~td~IvGfPGETeedf~eT---l~fl~el~~d-~v~i~~ysP~PGTpa~ 386 (622)
+|+.|+|+++.++..+ +++.++++ ++.+..++|+|+||||++|+++| ++++++++.. .+.++.|+|.|||+++
T Consensus 325 ~l~~~~k~~~~~~~~~~a~~~~~~~--~~~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~ 402 (490)
T COG1032 325 LLKKINKGITTEEVLEEAVKIAKEH--GLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQ 402 (490)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhC--CceeeEEEEEcCCCCCHHHHHHHHHHHHHHHHhCccceEEEeeeeCCCCCchh
Confidence 9999999999999995 99999999 99999999999999999999999 7888888885 8999999999999999
Q ss_pred cCCCCCHHHHHHH
Q 007001 387 RMKKVPSAVVKKR 399 (622)
Q Consensus 387 ~~~~v~~~~~k~R 399 (622)
.+..........+
T Consensus 403 ~~~~~~~~~~~~~ 415 (490)
T COG1032 403 EMPKLENELLKRR 415 (490)
T ss_pred hcccccchhhhhh
Confidence 8875444444333
No 33
>PRK07094 biotin synthase; Provisional
Probab=99.93 E-value=9.7e-25 Score=231.20 Aligned_cols=196 Identities=16% Similarity=0.286 Sum_probs=157.4
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCC-cCC-CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGH-LGS-YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~-~rs-r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
..+.|++++||+++|+||.++...+. .+. .++++|+++++.+.+.|+++|.|+|++...+.. ..+.++++.+.+.
T Consensus 39 ~~~~i~~s~gC~~~C~fC~~~~~~~~~~r~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~---~~l~~l~~~i~~~ 115 (323)
T PRK07094 39 LRGLIEFSNYCRNNCLYCGLRRDNKNIERYRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTD---EKIADIIKEIKKE 115 (323)
T ss_pred EEEEEEECCCCCCCCEeCCcccCCCCCcCcCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHcc
Confidence 35689999999999999999866553 333 499999999999999999999999875444432 3567777777653
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~ 342 (622)
. + ..+.++ +...++. .+..+ +..+ +.++++|+||+|+++++.|+++++.+++.++++.++++ |+.+.
T Consensus 116 -~--~-l~i~~~---~g~~~~e--~l~~L-k~aG-~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~--Gi~v~ 182 (323)
T PRK07094 116 -L--D-VAITLS---LGERSYE--EYKAW-KEAG-ADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKEL--GYEVG 182 (323)
T ss_pred -C--C-ceEEEe---cCCCCHH--HHHHH-HHcC-CCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeec
Confidence 2 2 233332 2222222 23333 3444 78999999999999999999999999999999999999 99999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 007001 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396 (622)
Q Consensus 343 td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 396 (622)
+++|+|+||||.+++.++++++++++++.+.+++|+|.||||+++.+..+.+..
T Consensus 183 ~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~ 236 (323)
T PRK07094 183 SGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELT 236 (323)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHH
Confidence 999999999999999999999999999999999999999999998875554443
No 34
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.92 E-value=1.1e-24 Score=233.45 Aligned_cols=209 Identities=18% Similarity=0.275 Sum_probs=165.4
Q ss_pred EEEeCCCCCCCCCCcccCccCCC-----cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 188 ILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG~-----~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
||.|=- |+.+|.||.++...+. +..+..++|..|++.+....++.|+|.|++.+.... ..+.+|++.+.+.
T Consensus 10 YiHiPF-C~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGTPs~L~~---~~l~~ll~~i~~~ 85 (353)
T PRK05904 10 YIHIPF-CQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLND---QLLDILLSTIKPY 85 (353)
T ss_pred EEEeCC-ccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccCCH---HHHHHHHHHHHHh
Confidence 444433 9999999998754221 223345556666654433457788888876665543 3567788888776
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-E
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-I 341 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~-i 341 (622)
++ ....+++. .+|..++++. +..+. ..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++ |+. +
T Consensus 86 ~~--~~~eitiE-~nP~~lt~e~--l~~lk-~~G-~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~--G~~~v 156 (353)
T PRK05904 86 VD--NNCEFTIE-CNPELITQSQ--INLLK-KNK-VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKN--GIYNI 156 (353)
T ss_pred cC--CCCeEEEE-eccCcCCHHH--HHHHH-HcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcE
Confidence 54 45677777 7999887643 44444 444 89999999999999999999999999999999999999 875 9
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA 409 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~ 409 (622)
..|||+|+||||.++++++++++.+++++++.++.|+++|||+++++. .++++...++...+.++.+.
T Consensus 157 ~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~ 225 (353)
T PRK05904 157 SCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNK 225 (353)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 57788888888888887764
No 35
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.92 E-value=1.2e-23 Score=220.28 Aligned_cols=195 Identities=21% Similarity=0.319 Sum_probs=157.6
Q ss_pred CccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 007001 183 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 261 (622)
Q Consensus 183 ~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~ 261 (622)
....+|+.+++||+++|+||+++..+|+.++ ++++++++++.+.+.|+++|+|+|+|...|. |.+ ..+.+++++|.+
T Consensus 61 ~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~-~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~ 138 (302)
T TIGR00510 61 HGTATFMILGDICTRRCPFCDVAHGRNPLPP-DPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIRE 138 (302)
T ss_pred CCEEEEEecCcCcCCCCCcCCccCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHh
Confidence 4567899999999999999999988887766 5799999999999999999999998776553 222 468999999987
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i 341 (622)
..+ + ..+++ +.|+... ..+.+..++. .+ +..+...+|+. +++++.|+|+++.++++++++.+++.+||+.+
T Consensus 139 ~~p--~-i~Iev--l~~d~~g-~~e~l~~l~~-aG-~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~ 209 (302)
T TIGR00510 139 KLP--N-IKIET--LVPDFRG-NIAALDILLD-AP-PDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNLPT 209 (302)
T ss_pred cCC--C-CEEEE--eCCcccC-CHHHHHHHHH-cC-chhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCee
Confidence 554 2 23444 3443221 1122333333 33 45677889977 88999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee-e-CCCCccccCC
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY-P-RPGTPAARMK 389 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ys-P-~PGTpa~~~~ 389 (622)
.++||+|| |||++|+.++++++++++++.+.+++|. | .+++|..++.
T Consensus 210 ~TgiIVGl-GETeee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~ 258 (302)
T TIGR00510 210 KSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYV 258 (302)
T ss_pred cceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCC
Confidence 99999999 9999999999999999999999999995 5 6788877764
No 36
>PRK12928 lipoyl synthase; Provisional
Probab=99.92 E-value=1.1e-23 Score=219.62 Aligned_cols=209 Identities=18% Similarity=0.258 Sum_probs=159.6
Q ss_pred CccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHH
Q 007001 183 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVA 261 (622)
Q Consensus 183 ~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~ 261 (622)
....+||.+++||+++|+||+++. |+.+++++++++++++.+.+.|+++|+|+|++...+. |.+ ..+.++++.|.+
T Consensus 58 ~~~~tfv~is~gC~~~C~FCa~~~--g~~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~-d~g~~~~~ell~~Ik~ 134 (290)
T PRK12928 58 QGTATFLIMGSICTRRCAFCQVDK--GRPMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLP-DGGAAHFVATIAAIRA 134 (290)
T ss_pred CCEEEEEEecccccCcCCCCCccC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCccc-ccCHHHHHHHHHHHHh
Confidence 356789999999999999999987 6677899999999999999999999999997653322 111 357899999976
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i 341 (622)
..+ .+++..+.|+.+....+.+..+...+ ...+..++|| ++++++.|+|+++.+++++.++.+++..|++.+
T Consensus 135 ~~p-----~~~I~~ltp~~~~~~~e~L~~l~~Ag--~~i~~hnlEt-~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~ 206 (290)
T PRK12928 135 RNP-----GTGIEVLTPDFWGGQRERLATVLAAK--PDVFNHNLET-VPRLQKAVRRGADYQRSLDLLARAKELAPDIPT 206 (290)
T ss_pred cCC-----CCEEEEeccccccCCHHHHHHHHHcC--chhhcccCcC-cHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcee
Confidence 543 23445556654321112344454432 3344445776 699999999999999999999999999777999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee--CCCCccccCCCCCHHHHHHHHHHHHHHHHH
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP--RPGTPAARMKKVPSAVVKKRSRELTSVFEA 409 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP--~PGTpa~~~~~v~~~~~k~R~~~L~~l~~~ 409 (622)
.++||+|| |||++|+.++++++++++++.+++|+|.+ ....|..++. ++ +.++.+.+...+
T Consensus 207 ~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~--~~----~~f~~~~~~~~~ 269 (290)
T PRK12928 207 KSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYW--TP----EEFEALGQIARE 269 (290)
T ss_pred cccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeecc--CH----HHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999986 5556655542 22 234455555543
No 37
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=2.3e-23 Score=225.41 Aligned_cols=192 Identities=20% Similarity=0.331 Sum_probs=155.6
Q ss_pred EEEEEeCCCCCCCCCCcccCcc--CCCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~Ei~~L~~~---GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
..||.|-- |+++|+||.++.. ++..+.+.++.+++|++.+... +++.|+|.|++.+.... ..+.++++.+.
T Consensus 3 ~lYihiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGtpt~l~~---~~l~~ll~~i~ 78 (377)
T PRK08599 3 SAYIHIPF-CEHICYYCDFNKVFIKNQPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGTPTALSA---EQLERLLTAIH 78 (377)
T ss_pred eEEEEeCC-cCCCCCCCCCeeeccCccCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCCcccCCH---HHHHHHHHHHH
Confidence 46788886 9999999998743 3455667799999999776554 46677777655443332 35788888887
Q ss_pred HhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 007001 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340 (622)
Q Consensus 261 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~ 340 (622)
+.++..+...+.+. ++|..+++.. +.. ++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++ |+.
T Consensus 79 ~~~~~~~~~eit~e-~~p~~l~~e~--l~~-l~~~G-~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~--g~~ 151 (377)
T PRK08599 79 RNLPLSGLEEFTFE-ANPGDLTKEK--LQV-LKDSG-VNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKA--GFD 151 (377)
T ss_pred HhCCCCCCCEEEEE-eCCCCCCHHH--HHH-HHHcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCC
Confidence 76542233466665 7998887643 443 43444 79999999999999999999999999999999999999 875
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 341 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 341 -i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
+..|+|+|+||||.+++.++++++.+++++++.+++++|+|||++++.
T Consensus 152 ~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~~~ 200 (377)
T PRK08599 152 NISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKTVFYNL 200 (377)
T ss_pred cEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCChhHHH
Confidence 789999999999999999999999999999999999999999999865
No 38
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.91 E-value=1.1e-22 Score=220.03 Aligned_cols=211 Identities=19% Similarity=0.299 Sum_probs=161.4
Q ss_pred EEEeCCCCCCCCCCcccCccC-CCcC-CCC----HHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcCCCHHHH
Q 007001 188 ILPINVGCLGACTYCKTKHAR-GHLG-SYT----VESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 255 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~r-G~~r-sr~----~e~Iv~Ei~~L~~~------GvkeI~L~g~d~~~yg~d~~~~l~eL 255 (622)
||.|=- |+++|+||.++... ++.+ +.+ ++.+.+|++...+. .++.|+|.|++.+.... ..+.+|
T Consensus 6 YiHiPF-C~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~l 81 (375)
T PRK05628 6 YVHVPF-CATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGA---EGLARV 81 (375)
T ss_pred EEEeCC-cCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCCH---HHHHHH
Confidence 444442 99999999986543 2322 233 78888898876543 26678887766655543 357888
Q ss_pred HHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007001 256 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 256 L~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
++.+.+.++......+.+. ++|..+++.. +..+. ..+ +++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 82 l~~i~~~~~~~~~~e~t~e-~~p~~i~~e~--l~~l~-~~G-~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~ 156 (375)
T PRK05628 82 LDAVRDTFGLAPGAEVTTE-ANPESTSPEF--FAALR-AAG-FTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAA 156 (375)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCCCCCCHHH--HHHHH-HcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 8888765532233455554 7899887643 44343 334 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC------CCCHHHHHHHHHHHHHHHH
Q 007001 336 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK------KVPSAVVKKRSRELTSVFE 408 (622)
Q Consensus 336 ~pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~------~v~~~~~k~R~~~L~~l~~ 408 (622)
|+. +..|||+|+||||.++|.+|++++.+++++++.+++++++||||+++.. ..++++..++...+.+...
T Consensus 157 --g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 234 (375)
T PRK05628 157 --GFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLS 234 (375)
T ss_pred --CCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 887 9999999999999999999999999999999999999999999998752 2445666666666666555
Q ss_pred H
Q 007001 409 A 409 (622)
Q Consensus 409 ~ 409 (622)
+
T Consensus 235 ~ 235 (375)
T PRK05628 235 A 235 (375)
T ss_pred H
Confidence 3
No 39
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=2.5e-22 Score=221.95 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=157.8
Q ss_pred ccEEEEEeCCCCCCCCCCcccCcc--CCCcCCCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCcCCCHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDIGVNLPIL 255 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~Ei~~L~~~------GvkeI~L~g~d~~~yg~d~~~~l~eL 255 (622)
+...||.|-- |+++|+||.+... .+..+.+.++.+++||+...+. .++.|+|.|++.+.... ..+.+|
T Consensus 61 ~~~lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGTPs~L~~---~~l~~l 136 (449)
T PRK09058 61 KRLLYIHIPF-CRTHCTFCGFFQNAWNPEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSA---EDLARL 136 (449)
T ss_pred ceEEEEEeCC-cCCcCCCCCCcCcCCchhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCccccCCH---HHHHHH
Confidence 3456777766 9999999987543 2334556789999999986642 36678887766555433 367888
Q ss_pred HHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007001 256 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 256 L~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
++.+.+.++......+++. .+|..+++.. +..+. ..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 137 l~~i~~~~~l~~~~eitiE-~~p~~~t~e~--l~~l~-~aG-vnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~ 211 (449)
T PRK09058 137 ITALREYLPLAPDCEITLE-GRINGFDDEK--ADAAL-DAG-ANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVAR 211 (449)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCcCcCCHHH--HHHHH-HcC-CCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 8888776654445677876 7898887643 44444 444 89999999999999999999999999999999999999
Q ss_pred CCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 336 VPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 336 ~pg-i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
| ..+..|||+|+||||.++++++++++.+++++++.++.|+++|||++++.
T Consensus 212 --g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~ 263 (449)
T PRK09058 212 --DRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKA 263 (449)
T ss_pred --CCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHH
Confidence 8 78999999999999999999999999999999999999999999999875
No 40
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.89 E-value=4.1e-22 Score=209.52 Aligned_cols=190 Identities=17% Similarity=0.337 Sum_probs=143.6
Q ss_pred EEEeCCCCCCC--------CCCcccCccCCCcC---CCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCH
Q 007001 188 ILPINVGCLGA--------CTYCKTKHARGHLG---SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNL 252 (622)
Q Consensus 188 ~I~isrGC~~~--------CsFC~ip~~rG~~r---sr~~e~Iv~Ei~~L~~----~GvkeI~L~g~d~~~yg~d~~~~l 252 (622)
.|...-+||++ |+||.... .++++ .++.++|.++++...+ .+...++|.|.+ ++|... ..+
T Consensus 21 ~~~~g~~cpnrdg~~~~~gC~FC~~~~-~~~~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt-~t~l~~--~~L 96 (302)
T TIGR01212 21 TLHGGFSCPNRDGTKGRGGCTFCNDAS-RPIFADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYT-NTYAPV--EVL 96 (302)
T ss_pred ecCCCCCCCCCCCCCCCCCcccCCCCC-CccccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCC-cCCCCH--HHH
Confidence 45667889994 99998643 34454 3455555555554333 222225555544 444321 356
Q ss_pred HHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCc-eeecccCCCCCHHHHHhhcCCCCHHHHHHHHHH
Q 007001 253 PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY-SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDT 331 (622)
Q Consensus 253 ~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~-~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~ 331 (622)
.++++.+.+ .+ ....+++. ++|+.+++...++.+.+...+ + .++++|+||+++++|+.|||+++.+++.++++.
T Consensus 97 ~~l~~~i~~-~~--~~~~isi~-trpd~l~~e~l~~L~~l~~~G-~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~ 171 (302)
T TIGR01212 97 KEMYEQALS-YD--DVVGLSVG-TRPDCVPDEVLDLLAEYVERG-YEVWVELGLQTAHDKTLKKINRGHDFACYVDAVKR 171 (302)
T ss_pred HHHHHHHhC-CC--CEEEEEEE-ecCCcCCHHHHHHHHHhhhCC-ceEEEEEccCcCCHHHHHHHcCcChHHHHHHHHHH
Confidence 777777765 44 55667775 789988775433332233333 5 689999999999999999999999999999999
Q ss_pred HHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 332 LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 332 lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
++++ |+.+.+++|+|+||||.+++.+|++++.+++++.+.+++|+|.||||++++
T Consensus 172 l~~~--gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~ 226 (302)
T TIGR01212 172 ARKR--GIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKM 226 (302)
T ss_pred HHHc--CCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999986
No 41
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=2.2e-22 Score=215.84 Aligned_cols=183 Identities=14% Similarity=0.214 Sum_probs=149.9
Q ss_pred CCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCc
Q 007001 195 CLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268 (622)
Q Consensus 195 C~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~ 268 (622)
|+.+|.||..+...+ ..+.+.++.+++|++...+ .+++.|+|.|++.+.... ..+.+|++.+.+.+. ..
T Consensus 10 C~~~C~yC~f~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~---~~l~~ll~~i~~~~~--~~ 84 (350)
T PRK08446 10 CESKCGYCAFNSYENKHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSA---KFYEPIFEIISPYLS--KD 84 (350)
T ss_pred ccCcCCCCCCcCcCCCcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhcC--CC
Confidence 999999999865422 2445578999999997543 267888888876655543 246778888776543 44
Q ss_pred eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEE
Q 007001 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIATDIIC 347 (622)
Q Consensus 269 ~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi-~i~td~Iv 347 (622)
..+.+. ++|..+++.. +..+. ..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++ |+ .++.|+|+
T Consensus 85 ~eitiE-~nP~~~~~e~--l~~l~-~~G-vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~--g~~~v~iDli~ 157 (350)
T PRK08446 85 CEITTE-ANPNSATKAW--LKGMK-NLG-VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKA--GFENISIDLIY 157 (350)
T ss_pred ceEEEE-eCCCCCCHHH--HHHHH-HcC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCEEEEEeec
Confidence 677776 7998887643 44443 444 79999999999999999999999999999999999999 88 58999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC
Q 007001 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389 (622)
Q Consensus 348 GfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~ 389 (622)
|+||||.++|.++++++.+++++++.++.|++.||||+++..
T Consensus 158 GlPgqt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT~l~~~~ 199 (350)
T PRK08446 158 DTPLDNKKLLKEELKLAKELPINHLSAYSLTIEENTPFFEKN 199 (350)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEeccceecCCChhHHhh
Confidence 999999999999999999999999999999999999998754
No 42
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=4.8e-22 Score=214.86 Aligned_cols=190 Identities=21% Similarity=0.318 Sum_probs=148.1
Q ss_pred EEEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 187 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
.||.|-- |+++|+||.++...++ .+...++.+++|++.+.. .+++.|+|.|++.+.... ..+..|++.+.. .
T Consensus 6 lYiHiPf-C~~~C~yC~~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~---~~l~~L~~~i~~-~ 80 (374)
T PRK05799 6 LYIHIPF-CKQKCLYCDFPSYSGKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSL---EALEILKETIKK-L 80 (374)
T ss_pred EEEEeCC-ccCCCCCCCCCcccCCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCH---HHHHHHHHHHHh-C
Confidence 4555555 9999999999876554 233358999999986543 357778877754443322 234556666643 3
Q ss_pred CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-EE
Q 007001 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 342 (622)
Q Consensus 264 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~-i~ 342 (622)
.......+.+. ++|..+++.. +.. ++..+ +++++||+||+++++|+.|+|+++.+++.++++.++++ |+. +.
T Consensus 81 ~~~~~~eitie-~~p~~~t~e~--l~~-l~~~G-~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~--g~~~v~ 153 (374)
T PRK05799 81 NKKEDLEFTVE-GNPGTFTEEK--LKI-LKSMG-VNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKL--GFNNIN 153 (374)
T ss_pred CCCCCCEEEEE-eCCCcCCHHH--HHH-HHHcC-CCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CCCcEE
Confidence 31133455555 7898887643 443 44444 78999999999999999999999999999999999999 875 88
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 343 td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
.|+|+|+||||.+++.++++++.+++++++.+|.++|+||||++++
T Consensus 154 ~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~ 199 (374)
T PRK05799 154 VDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNL 199 (374)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHH
Confidence 9999999999999999999999999999999999999999999875
No 43
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=5.6e-22 Score=216.16 Aligned_cols=191 Identities=17% Similarity=0.264 Sum_probs=151.2
Q ss_pred EEEEeCCCCCCCCCCcccCcc-CCC-cCCC-------CHHHHHHHHHHHHH--CCCcEEEEeecCCCCCCCCcCCCHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHA-RGH-LGSY-------TVESLVGRVRTVIA--DGVKEVWLSSEDTGAYGRDIGVNLPIL 255 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~-rG~-~rsr-------~~e~Iv~Ei~~L~~--~GvkeI~L~g~d~~~yg~d~~~~l~eL 255 (622)
.||.|=- |+.+|.||.++.. .|. .+.+ -.+.+++||+.... .+++.|+|.|++.+.... ..+.++
T Consensus 13 lYiHiPF-C~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~---~~l~~l 88 (400)
T PRK07379 13 AYIHIPF-CRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSV---EQLERI 88 (400)
T ss_pred EEEEecc-ccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCH---HHHHHH
Confidence 3444443 9999999998743 121 1111 25678888876433 257788888876665543 357888
Q ss_pred HHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007001 256 LNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 256 L~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
++.|.+.++......+++. ++|..+++.. +..+ +..+ +++|+||+||+++++|+.|||+++.+++.++++.++++
T Consensus 89 l~~i~~~~~~~~~~eit~E-~~P~~lt~e~--l~~l-~~~G-vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~ 163 (400)
T PRK07379 89 LTTLDQRFGIAPDAEISLE-IDPGTFDLEQ--LQGY-RSLG-VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQA 163 (400)
T ss_pred HHHHHHhCCCCCCCEEEEE-eCCCcCCHHH--HHHH-HHCC-CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 8888776543344678877 7999887643 4444 3444 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 336 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 336 ~pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
|+. +..|+|+|+||||.+++++|++++.+++++++.++.|+|+||||+++.
T Consensus 164 --G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~ 215 (400)
T PRK07379 164 --GIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQ 215 (400)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHH
Confidence 886 899999999999999999999999999999999999999999999875
No 44
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=8.3e-22 Score=219.05 Aligned_cols=215 Identities=20% Similarity=0.280 Sum_probs=163.1
Q ss_pred ccEEEEEeCCCCCCCCCCcccCcc--CCC--cCCCCHHHHHHHHHHHHH------CCCcEEEEeecCCCCCCCCcCCCHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHA--RGH--LGSYTVESLVGRVRTVIA------DGVKEVWLSSEDTGAYGRDIGVNLP 253 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~--rG~--~rsr~~e~Iv~Ei~~L~~------~GvkeI~L~g~d~~~yg~d~~~~l~ 253 (622)
....||.|- -||.+|.||.++.. .+. .....++.+++|++.+.+ .++..|+|.|+..+.... ..+.
T Consensus 163 ~~sLYihIP-FC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~---~~L~ 238 (488)
T PRK08207 163 EVSIYIGIP-FCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTA---EELE 238 (488)
T ss_pred ceEEEEecC-CCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCH---HHHH
Confidence 345566666 49999999998754 121 112246888899887643 246678888876655433 3578
Q ss_pred HHHHHHHHhCC-CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHH
Q 007001 254 ILLNAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTL 332 (622)
Q Consensus 254 eLL~~l~~~l~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~l 332 (622)
+|++.+.+.++ ..+...+++...+|+.+++.. +. .++..+ +++++||+||+++++|+.|+|+++.+++.++++.+
T Consensus 239 ~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~--L~-~Lk~~G-v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~a 314 (488)
T PRK08207 239 RLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK--LE-VLKKYG-VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLA 314 (488)
T ss_pred HHHHHHHHhccccCCceEEEEEcCCCCCCCHHH--HH-HHHhcC-CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 88888876552 123446777766899887644 44 444444 78999999999999999999999999999999999
Q ss_pred HHhCCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC---CCCH-HHHHHHHHHHHHHH
Q 007001 333 IELVPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK---KVPS-AVVKKRSRELTSVF 407 (622)
Q Consensus 333 r~~~pgi-~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~---~v~~-~~~k~R~~~L~~l~ 407 (622)
+++ |+ .+.+|||+|+||||.+++.+|++++.+++++++.++.+++.|||++++.. .+|. +...+......+..
T Consensus 315 r~~--Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 315 REM--GFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred HhC--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 999 98 89999999999999999999999999999999999999999999999753 3443 33334444444444
Q ss_pred H
Q 007001 408 E 408 (622)
Q Consensus 408 ~ 408 (622)
+
T Consensus 393 ~ 393 (488)
T PRK08207 393 K 393 (488)
T ss_pred H
Confidence 4
No 45
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=1.9e-21 Score=211.65 Aligned_cols=198 Identities=18% Similarity=0.269 Sum_probs=156.8
Q ss_pred EEEEeCCCCCCCCCCcccCccCCC-----cCCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHARGH-----LGSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 257 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG~-----~rsr~~e~Iv~Ei~~L~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~ 257 (622)
.||.|=- |..+|.||.++..... ...+-.+.+.+|++.... ..++.|+|.|++.+.... ..|.+|++
T Consensus 22 lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~L~~---~~L~~ll~ 97 (394)
T PRK08898 22 LYVHFPW-CVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSA---AGLDRLLS 97 (394)
T ss_pred EEEEeCC-ccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCCCCH---HHHHHHHH
Confidence 4444444 9999999998754221 112356888888886542 236788888877776644 36788898
Q ss_pred HHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 007001 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337 (622)
Q Consensus 258 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 337 (622)
.+.+.++......+++. .+|..++.. .+..+... + +++++||+||++|++|+.|+|.++.+++.++++.+++.
T Consensus 98 ~i~~~~~~~~~~eit~E-~~p~~~~~e--~L~~l~~~-G-vnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~-- 170 (394)
T PRK08898 98 DVRALLPLDPDAEITLE-ANPGTFEAE--KFAQFRAS-G-VNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKH-- 170 (394)
T ss_pred HHHHhCCCCCCCeEEEE-ECCCCCCHH--HHHHHHHc-C-CCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHh--
Confidence 88887764344678886 789888763 35555443 3 79999999999999999999999999999999999998
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHH
Q 007001 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAV 395 (622)
Q Consensus 338 gi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~ 395 (622)
+..++.|+|+|+||||.+++.++++++.+++++++.++.|++.||||+++.. ++|...
T Consensus 171 ~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~ 229 (394)
T PRK08898 171 FDNFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDD 229 (394)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChH
Confidence 6678899999999999999999999999999999999999999999999865 455443
No 46
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.88 E-value=2.4e-21 Score=209.93 Aligned_cols=210 Identities=15% Similarity=0.204 Sum_probs=161.3
Q ss_pred EEEeCCCCCCCCCCcccCccCCCc--CCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 188 ILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~Ei~~L~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
||.|=- |..+|+||.+....... ..+.++.+++||+...+ ..++.|+|.|++.+.... ..|.+|++.+.+
T Consensus 8 YiHIPF-C~~kC~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~L~~ll~~i~~ 83 (380)
T PRK09057 8 YVHWPF-CLAKCPYCDFNSHVRHAIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQP---ETVAALLDAIAR 83 (380)
T ss_pred EEEeCC-cCCcCCCCCCcccCcCcCCHHHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCccccCCH---HHHHHHHHHHHH
Confidence 443333 99999999986543211 12357888999986554 246788888876665543 357888888887
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i 341 (622)
.++......+++. ++|..++... +..+.+ .+ +++|+||+||++|++|+.|||+++.+++.++++.++++ +..+
T Consensus 84 ~f~~~~~~eit~E-~~P~~i~~e~--L~~l~~-~G-vnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~--~~~v 156 (380)
T PRK09057 84 LWPVADDIEITLE-ANPTSVEAGR--FRGYRA-AG-VNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREI--FPRV 156 (380)
T ss_pred hCCCCCCccEEEE-ECcCcCCHHH--HHHHHH-cC-CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CccE
Confidence 6653344567776 7999887633 544443 34 79999999999999999999999999999999999999 7889
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-----CCC-HHHHHHHHHHHHHHHH
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-----KVP-SAVVKKRSRELTSVFE 408 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-----~v~-~~~~k~R~~~L~~l~~ 408 (622)
..|+|+|+||+|.+++.++++.+.+++++++.++++++.|||++++.. .+| +++..+..+...++..
T Consensus 157 ~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~ 229 (380)
T PRK09057 157 SFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITA 229 (380)
T ss_pred EEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998753 233 3444455555555544
No 47
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.88 E-value=1.4e-21 Score=210.34 Aligned_cols=196 Identities=16% Similarity=0.293 Sum_probs=151.5
Q ss_pred EEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHH-CC---CcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 188 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIA-DG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~-~G---vkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
||.|=. |+.+|.||........ ....-.+.+++|++...+ .| ++.|+|.|++.+.... ..+.++++.|.+
T Consensus 4 YiHiPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~---~~l~~ll~~i~~ 79 (360)
T TIGR00539 4 YIHIPF-CENKCGYCDFNSYENKSGPKEEYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSV---EAFERLFESIYQ 79 (360)
T ss_pred EEEeCC-CcCcCCCCCCcccCcCccCHHHHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCH---HHHHHHHHHHHH
Confidence 444444 9999999998654221 111235667777775433 24 6788888876665543 356778887766
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-E
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-Q 340 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi-~ 340 (622)
.+.......+++. ++|..+++.. +..+. ..+ ++++++|+||+++++|+.|+|+++.+++.++++.++++ |+ .
T Consensus 80 ~~~~~~~~eitie-~np~~lt~e~--l~~l~-~~G-v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~--G~~~ 152 (360)
T TIGR00539 80 HASLSDDCEITTE-ANPELITAEW--CKGLK-GAG-INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKS--GIEN 152 (360)
T ss_pred hCCCCCCCEEEEE-eCCCCCCHHH--HHHHH-HcC-CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 5432244567776 7999887643 44444 344 79999999999999999999999999999999999999 98 5
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHH
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSA 394 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~ 394 (622)
+..|+|+|+||||.+++.++++++.+++++++.++.|+|.|||++++.. ++|.+
T Consensus 153 v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~~~~~~~~~~ 207 (360)
T TIGR00539 153 ISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFEKNAKKLPDD 207 (360)
T ss_pred EEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhhhhhhcCcCH
Confidence 8999999999999999999999999999999999999999999999865 45543
No 48
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.87 E-value=3.9e-21 Score=211.45 Aligned_cols=195 Identities=18% Similarity=0.273 Sum_probs=153.9
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCC---cCCCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 256 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~---~rsr~~e~Iv~Ei~~L~~~----GvkeI~L~g~d~~~yg~d~~~~l~eLL 256 (622)
+...||.|=. |+++|+||.++...+. .....++.+++|++.+.+. .+..|.|.|+..+.... ..+.+|+
T Consensus 39 ~~~lYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~---~~l~~Ll 114 (430)
T PRK08208 39 ALSLYIHIPF-CEMRCGFCNLFTRTGADAEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNA---AELEKLF 114 (430)
T ss_pred ceEEEEEeCC-ccCcCCCCCCccccCCccchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCH---HHHHHHH
Confidence 4456888866 9999999998765432 2334679999999877643 35677776654444332 3567888
Q ss_pred HHHHHhCCCCC-ceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007001 257 NAIVAELPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 257 ~~l~~~l~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
+.+.+.++... ...+++. ++|..+++.. +..+. ..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 115 ~~i~~~~~~~~~~~eitiE-~~P~~lt~e~--l~~l~-~~G-~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~ 189 (430)
T PRK08208 115 DSVERVLGVDLGNIPKSVE-TSPATTTAEK--LALLA-ARG-VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAA 189 (430)
T ss_pred HHHHHhCCCCCCCceEEEE-eCcCcCCHHH--HHHHH-HcC-CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHc
Confidence 88876554212 3456666 7898887643 44343 334 79999999999999999999999999999999999999
Q ss_pred CCCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC
Q 007001 336 VPGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389 (622)
Q Consensus 336 ~pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~ 389 (622)
|+. +..|||+|+||||.++|+++++++.+++++++.++++++.|||++++..
T Consensus 190 --g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T~l~~~~ 242 (430)
T PRK08208 190 --GFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFLYPLYVRPLTGLGRRA 242 (430)
T ss_pred --CCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCCccchhc
Confidence 885 6899999999999999999999999999999999999999999998764
No 49
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.87 E-value=3.4e-21 Score=203.47 Aligned_cols=193 Identities=17% Similarity=0.177 Sum_probs=145.4
Q ss_pred ccEEEEEeCCCCCC----CCCCcccCccCCCcCCCCHHHHHHHHHHHHHC-CCcE----E-EEeecCCCCCCCCcCCCHH
Q 007001 184 KFVEILPINVGCLG----ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE----V-WLSSEDTGAYGRDIGVNLP 253 (622)
Q Consensus 184 ~~~a~I~isrGC~~----~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~-Gvke----I-~L~g~d~~~yg~d~~~~l~ 253 (622)
.....|..+||||+ +|+||.... +..+.++++.|+++++.+.+. +.+. + .|+++.+.....-....+.
T Consensus 14 ~~~~~i~~srGC~~~~~g~C~FC~~~~--~~~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~ 91 (313)
T TIGR01210 14 KSLTIILRTRGCYWAREGGCYMCGYLA--DSSPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRN 91 (313)
T ss_pred ceEEEEEeCCCCCCCCCCcCccCCCCC--CCCCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHH
Confidence 34457899999999 599997553 345667999999999998864 3331 1 2444322211100012345
Q ss_pred HHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCce-eecccCCCCCHHHHH-hhcCCCCHHHHHHHHHH
Q 007001 254 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS-FLHVPVQSGSDAVLS-AMNREYTLSDFRTVVDT 331 (622)
Q Consensus 254 eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~-~l~IGlQSgsd~vLk-~MnR~~t~e~~~~~I~~ 331 (622)
++++.+.+ .+ ...++.+. ++|+.++++. |..+.+ .+ ++ +|.+|+||+|+++|+ .|||+++.+++.++++.
T Consensus 92 ~i~~~l~~-~~--~~~~i~~e-srpd~i~~e~--L~~l~~-aG-~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~ 163 (313)
T TIGR01210 92 YIFEKIAQ-RD--NLKEVVVE-SRPEFIDEEK--LEELRK-IG-VNVEVAVGLETANDRIREKSINKGSTFEDFIRAAEL 163 (313)
T ss_pred HHHHHHHh-cC--CcceEEEE-eCCCcCCHHH--HHHHHH-cC-CCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHH
Confidence 67777654 32 24566665 6998887643 554443 44 77 799999999999995 89999999999999999
Q ss_pred HHHhCCCCEEEEEEEEcCCC----CCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC
Q 007001 332 LIELVPGMQIATDIICGFPG----ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389 (622)
Q Consensus 332 lr~~~pgi~i~td~IvGfPG----ETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~ 389 (622)
++++ |+.+.++||+|+|+ ||.+++.++++++.+++ +++.+++++|.|||+++++.
T Consensus 164 ~~~~--Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~ 222 (313)
T TIGR01210 164 ARKY--GAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLW 222 (313)
T ss_pred HHHc--CCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHH
Confidence 9999 99999999999996 55678889999999999 99999999999999987653
No 50
>PRK06256 biotin synthase; Validated
Probab=99.87 E-value=6.8e-21 Score=202.98 Aligned_cols=196 Identities=18% Similarity=0.277 Sum_probs=149.8
Q ss_pred EEEe-CCCCCCCCCCcccCccCC----CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 188 ILPI-NVGCLGACTYCKTKHARG----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 188 ~I~i-srGC~~~CsFC~ip~~rG----~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
.+.+ ++||+++|.||..+...+ +++.+++++|+++++.+.+.|++++.|++........+ ...+.++++.+.+.
T Consensus 60 i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~-~~~~~e~i~~i~~~ 138 (336)
T PRK06256 60 IINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKE-VDQVVEAVKAIKEE 138 (336)
T ss_pred eeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchH-HHHHHHHHHHHHhc
Confidence 3443 999999999999876543 35678999999999999999999988875322211111 02455666666543
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIA 342 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~ 342 (622)
. + +.+. ++...+++.. +..+ +..+ +.++++++|| ++++++.|+++++.+++.++++.++++ |+.+.
T Consensus 139 ~---~---i~~~-~~~g~l~~e~--l~~L-keaG-~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~--Gi~v~ 204 (336)
T PRK06256 139 T---D---LEIC-ACLGLLTEEQ--AERL-KEAG-VDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAA--GIEPC 204 (336)
T ss_pred C---C---CcEE-ecCCcCCHHH--HHHH-HHhC-CCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHc--CCeec
Confidence 1 2 2222 2222233322 3333 3344 6899999999 999999999999999999999999999 99999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 007001 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399 (622)
Q Consensus 343 td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R 399 (622)
+++|+|+ |||.+|+.++++++++++++.+.++.|.|+||||+++.+.++..+..+.
T Consensus 205 ~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ 260 (336)
T PRK06256 205 SGGIIGM-GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKT 260 (336)
T ss_pred cCeEEeC-CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHH
Confidence 9999998 9999999999999999999999999999999999988776766554443
No 51
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=1.3e-20 Score=204.82 Aligned_cols=184 Identities=16% Similarity=0.213 Sum_probs=146.7
Q ss_pred CCCCCCCcccCccCCCc--CCCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCc
Q 007001 195 CLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268 (622)
Q Consensus 195 C~~~CsFC~ip~~rG~~--rsr~~e~Iv~Ei~~L~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~ 268 (622)
|..+|.||.+....... ...-.+.+.+|++.... ..++.|+|.|++.+.... ..+.++++.+.+.......
T Consensus 21 C~~~C~yC~f~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTPs~l~~---~~l~~ll~~i~~~~~~~~~ 97 (390)
T PRK06582 21 CLSKCPYCDFNSHVASTIDHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNP---VIVEGIINKISNLAIIDNQ 97 (390)
T ss_pred CcCcCCCCCCeeccCCCCCHHHHHHHHHHHHHHHHHHccCCceeEEEECCCccccCCH---HHHHHHHHHHHHhCCCCCC
Confidence 99999999986543211 11235667788876543 246788888876655433 3467777777764432255
Q ss_pred eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 007001 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG 348 (622)
Q Consensus 269 ~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvG 348 (622)
..+++. ++|..++... +..+. ..+ +++|+||+||+++++|+.|+|+++.+++.++++.+++. +..++.|+|+|
T Consensus 98 ~eitiE-~nP~~~~~e~--l~~l~-~~G-vnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~--~~~v~~DlI~G 170 (390)
T PRK06582 98 TEITLE-TNPTSFETEK--FKAFK-LAG-INRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTI--FPRVSFDLIYA 170 (390)
T ss_pred CEEEEE-eCCCcCCHHH--HHHHH-HCC-CCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHh--CCcEEEEeecC
Confidence 678887 7999887633 44444 344 79999999999999999999999999999999999998 77889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 349 fPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
+||||.++++++++.+.+++++++.++.+++.||||++++
T Consensus 171 lPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l~~~ 210 (390)
T PRK06582 171 RSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKL 210 (390)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCChHHHH
Confidence 9999999999999999999999999999999999999875
No 52
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.86 E-value=3e-20 Score=201.21 Aligned_cols=197 Identities=16% Similarity=0.253 Sum_probs=154.4
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC--cC-CCCHHHHHHHHHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHARGH--LG-SYTVESLVGRVRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNA 258 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~--~r-sr~~e~Iv~Ei~~L~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 258 (622)
..||.|=. |+.+|.||........ .. ..-.+.+++||+.... .+++.|+|.|++.+.... ..+.++++.
T Consensus 8 ~lYiHiPF-C~~~C~yC~f~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~---~~l~~ll~~ 83 (378)
T PRK05660 8 SLYIHIPW-CVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSA---EAIQRLLDG 83 (378)
T ss_pred EEEEEeCC-ccCcCCCCCCeecCCCCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCH---HHHHHHHHH
Confidence 34555555 9999999997643221 11 1125667778775322 468889999887766543 357888888
Q ss_pred HHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 259 l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
+.+.++......+++. ++|..++... +..+. ..+ +++|+||+||+++++|+.|+|+++.++..++++.++++ |
T Consensus 84 l~~~~~~~~~~eit~e-~np~~l~~e~--l~~Lk-~~G-v~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~--G 156 (378)
T PRK05660 84 VRARLPFAPDAEITME-ANPGTVEADR--FVGYQ-RAG-VNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGL--G 156 (378)
T ss_pred HHHhCCCCCCcEEEEE-eCcCcCCHHH--HHHHH-HcC-CCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 8876653334577776 7999887633 44444 444 79999999999999999999999999999999999999 9
Q ss_pred C-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCH
Q 007001 339 M-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPS 393 (622)
Q Consensus 339 i-~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~ 393 (622)
+ .+..|+|+|+||||.+++.++++++.+++++++.+++++++|||++++.. .+|.
T Consensus 157 ~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~ 213 (378)
T PRK05660 157 LRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPD 213 (378)
T ss_pred CCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcC
Confidence 8 47899999999999999999999999999999999999999999999754 4554
No 53
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=8.9e-21 Score=204.81 Aligned_cols=187 Identities=17% Similarity=0.244 Sum_probs=141.4
Q ss_pred EEEEeCCCCCCCCCCcccCccCCCc--CCCCHHHHHHH-HHHHHH----CCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGR-VRTVIA----DGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~E-i~~L~~----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l 259 (622)
.||.|=- |+++|.||.+....... ...-++.+++| ++.+.. ..++.|+|.|++.+.... ..+.+|++.|
T Consensus 9 lYiHIPF-C~~~C~yC~f~~~~~~~~~~~~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGTPs~l~~---~~l~~ll~~i 84 (370)
T PRK06294 9 LYIHIPF-CTKKCHYCSFYTIPYKEESVSLYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGTPSLVPP---ALIQDILKTL 84 (370)
T ss_pred EEEEeCC-ccCcCCCCcCcccCCCccCHHHHHHHHHHHHHHHhhhhccCCceeEEEECCCccccCCH---HHHHHHHHHH
Confidence 3444433 99999999876532111 11124556666 443332 235667777765544332 2466777776
Q ss_pred HHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 007001 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi 339 (622)
.+. ....+++. ++|..+++.. +..+. ..+ +++++||+||+++++|+.|+|+++.+++.++++.+++. |+
T Consensus 85 ~~~----~~~eit~E-~~P~~~~~~~--l~~l~-~~G-~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~--g~ 153 (370)
T PRK06294 85 EAP----HATEITLE-ANPENLSESY--IRALA-LTG-INRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEH--GF 153 (370)
T ss_pred HhC----CCCeEEEE-eCCCCCCHHH--HHHHH-HCC-CCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHc--CC
Confidence 542 35678886 8999887643 44343 444 79999999999999999999999999999999999999 88
Q ss_pred -EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 340 -QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 340 -~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
.+..|+|+|+||||.++|.++++++.+++++++.++.++|.||||+++.
T Consensus 154 ~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~ 203 (370)
T PRK06294 154 SNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKH 203 (370)
T ss_pred CeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHH
Confidence 4999999999999999999999999999999999999999999999874
No 54
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.86 E-value=2.1e-20 Score=182.16 Aligned_cols=194 Identities=36% Similarity=0.550 Sum_probs=155.6
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCC-----CcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~G-----vkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
.+++.+++||+++|.||..+...|+.+..+++++.++++.+.+.| .+.+.|+|++...... ..+.++++.+.
T Consensus 2 ~~~i~~t~~C~~~C~yC~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~---~~~~~~~~~~~ 78 (216)
T smart00729 2 LALYIITRGCPRRCTFCSFPSARGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSP---EQLEELLEAIR 78 (216)
T ss_pred ccEEEecCchhccCCcCCcCccccchhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCH---HHHHHHHHHHH
Confidence 467899999999999999886555566778999999999997665 3667777766554432 13678888887
Q ss_pred HhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-C
Q 007001 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-M 339 (622)
Q Consensus 261 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg-i 339 (622)
+.........+.+. +++..+++.. +..+.+. + +..+.++++|+++++++.++++.+.+++.++++.++++ | +
T Consensus 79 ~~~~~~~~~~~~~~-tn~~~~~~~~--~~~l~~~-~-~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--g~~ 151 (216)
T smart00729 79 EILGLADDVEITIE-TRPGTLTEEL--LEALKEA-G-VNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREA--GPI 151 (216)
T ss_pred HhCCCCCCeEEEEE-eCcccCCHHH--HHHHHHc-C-CCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHh--CCc
Confidence 65321013445554 5665555433 4444443 3 45899999999999999999999999999999999999 8 8
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC
Q 007001 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389 (622)
Q Consensus 340 ~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~ 389 (622)
.+.+.+|+|+|+++.+++.++++++.+++++.+.+++|.|.||||+++++
T Consensus 152 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 152 KVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 99999999999999999999999999999999999999999999999887
No 55
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.85 E-value=9.7e-20 Score=190.40 Aligned_cols=195 Identities=19% Similarity=0.238 Sum_probs=148.6
Q ss_pred EEEEEe-CCCCCCCCCCcccCccC---C-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 186 VEILPI-NVGCLGACTYCKTKHAR---G-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 186 ~a~I~i-srGC~~~CsFC~ip~~r---G-~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
.+.+.+ ++||+++|.||..+... + ..+.+++++|+++++.+.+.|++++.|++....... ..+.++++.+.
T Consensus 29 ~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~----~~~~~~~~~i~ 104 (296)
T TIGR00433 29 CTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKD----REFMEYVEAMV 104 (296)
T ss_pred EEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh----HHHHHHHHHHH
Confidence 345665 99999999999987643 1 357789999999999999999999877643222111 23355666665
Q ss_pred HhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 007001 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340 (622)
Q Consensus 261 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~ 340 (622)
+.....+. .+. ++...++++ ..+.++..+ +..+.+++| +++++++.++++++.+++.++++.++++ |+.
T Consensus 105 ~~~~~~~i---~~~-~~~g~~~~e---~l~~Lk~aG-~~~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~--Gi~ 173 (296)
T TIGR00433 105 QIVEEMGL---KTC-ATLGLLDPE---QAKRLKDAG-LDYYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKA--GLK 173 (296)
T ss_pred HHHHhCCC---eEE-ecCCCCCHH---HHHHHHHcC-CCEEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHc--CCE
Confidence 43221122 221 233334432 333444444 789999999 8999999999999999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVV 396 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 396 (622)
+.+++|+|+ +||.+++.++++++.+++++.+.+++|.|.||||+++.+..+.+..
T Consensus 174 v~~~~i~Gl-~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~ 228 (296)
T TIGR00433 174 VCSGGIFGL-GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDA 228 (296)
T ss_pred EEEeEEEeC-CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHH
Confidence 999999998 9999999999999999999999999999999999998766654433
No 56
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.85 E-value=2.2e-20 Score=199.20 Aligned_cols=198 Identities=17% Similarity=0.236 Sum_probs=152.5
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---------CCCHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---------GVNLPILL 256 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~---------~~~l~eLL 256 (622)
..+|.+++||+.+|+||.++..+|..+++++|+|+++++.+.+.|++++.|+|++...+..+. ...+.+++
T Consensus 13 ~~~i~~Tn~C~~~C~fC~~~~~~~~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i 92 (336)
T PRK06245 13 NVFIPLTYECRNRCGYCTFRRDPGQPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYL 92 (336)
T ss_pred ceeeeccccccCCCccCCCcCCCCccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHH
Confidence 457899999999999999988888888999999999999999999999999987665543211 02345566
Q ss_pred HHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC---CCCHHHHHHHHHHHH
Q 007001 257 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLI 333 (622)
Q Consensus 257 ~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR---~~t~e~~~~~I~~lr 333 (622)
+++.+... . +-.+..++|..+++.. +..+.+. + ..+++++||+++.+++.|+| +.+.++.++.++.++
T Consensus 93 ~~i~~~~~--~--~g~~~~~~~~~lt~e~--i~~Lk~a-g--~~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~ 163 (336)
T PRK06245 93 YDLCELAL--E--EGLLPHTNAGILTREE--MEKLKEV-N--ASMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAG 163 (336)
T ss_pred HHHHHHHh--h--cCCCccccCCCCCHHH--HHHHHHh-C--CCCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHH
Confidence 66554322 1 1112246676666533 4444332 2 35788899999999988865 445788899999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEEeeeCCCCccccCCCCCHHH
Q 007001 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAV 395 (622)
Q Consensus 334 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~-----~d~v~i~~ysP~PGTpa~~~~~v~~~~ 395 (622)
+. |+.+.+++|+|+ |||.+++.+++.++++++ ++.+.+++|+|.||||+..++.++.+.
T Consensus 164 ~~--Gi~~~~~~i~G~-gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e 227 (336)
T PRK06245 164 KL--KIPFTTGILIGI-GETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEE 227 (336)
T ss_pred Hc--CCceeeeeeeEC-CCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHH
Confidence 88 999999999998 999999999999999985 678899999999999997766555443
No 57
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.84 E-value=6.7e-20 Score=201.50 Aligned_cols=189 Identities=17% Similarity=0.220 Sum_probs=140.8
Q ss_pred ccEEEEEeCCCCCCCCCCcccCcc-CCCcCCC-CHHHHHHHHHHHHHCC--CcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHA-RGHLGSY-TVESLVGRVRTVIADG--VKEVWLSSEDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~-rG~~rsr-~~e~Iv~Ei~~L~~~G--vkeI~L~g~d~~~yg~d~~~~l~eLL~~l 259 (622)
+...||.|-- |+++|+||.++.. .+..+.+ .++.+++|++.+.+.| +..|+|.|++.+.. . ..|.++++.+
T Consensus 52 ~~~LYvHIPF-C~~~C~yC~f~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l-~---~~L~~ll~~i 126 (433)
T PRK08629 52 KYMLYAHVPF-CHTLCPYCSFHRFYFKEDKARAYFISLRKEMEMVKELGYDFESMYVGGGTTTIL-E---DELAKTLELA 126 (433)
T ss_pred cEEEEEEeCC-ccCcCCCCCCcCcCCCcchHHHHHHHHHHHHHHHHhcCCceEEEEECCCccccC-H---HHHHHHHHHH
Confidence 3344555554 9999999998754 2222222 4789999999877654 45677776554432 2 3577888887
Q ss_pred HHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC-C
Q 007001 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP-G 338 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p-g 338 (622)
.+.+ ....+++. ++|+.+++.. +. .++.. +++++||+||++|++|+.|+|.++.++..++++.++.+.. .
T Consensus 127 ~~~f---~i~eis~E-~~P~~lt~e~--L~-~l~~~--vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~ 197 (433)
T PRK08629 127 KKLF---SIKEVSCE-SDPNHLDPPK--LK-QLKGL--IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLF 197 (433)
T ss_pred HHhC---CCceEEEE-eCcccCCHHH--HH-HHHHh--CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccC
Confidence 7654 34577776 7999987643 44 33333 7999999999999999999999987666555555554311 3
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccc
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 386 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~ 386 (622)
..++.|+|+||||||.++|.++++++.+++++++++|++++.|||+..
T Consensus 198 ~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~t~~~ 245 (433)
T PRK08629 198 PIINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTRKS 245 (433)
T ss_pred CeEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccCchhh
Confidence 467889999999999999999999999999999999999999999754
No 58
>PLN02428 lipoic acid synthase
Probab=99.84 E-value=1.2e-19 Score=192.46 Aligned_cols=209 Identities=19% Similarity=0.233 Sum_probs=159.9
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhC
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 263 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~~l 263 (622)
...++.+++||+++|.||.++..+++.+.+ ++++.+.++.+.+.|+++++|++++...+ .|.+ ..+.++++.|.+..
T Consensus 102 taT~milg~gCtr~CrFCav~~~~~p~~~d-~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~ 179 (349)
T PLN02428 102 TATIMILGDTCTRGCRFCAVKTSRTPPPPD-PDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLK 179 (349)
T ss_pred eEEEEEecCCCCCCCCCCcCCCCCCCCCCC-hhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhC
Confidence 445778999999999999999877766654 77888888888889999999999876554 2222 46788888887654
Q ss_pred CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCCEEE
Q 007001 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIA 342 (622)
Q Consensus 264 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr~~~pgi~i~ 342 (622)
+ ++++..+.|+.+.+ +++.+.+..++ +..++.++|+ ++++++.|+ ++.+.++++++++.+++.+||+.+.
T Consensus 180 P-----~i~Ie~L~pdf~~d--~elL~~L~eAG-~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tk 250 (349)
T PLN02428 180 P-----EILVEALVPDFRGD--LGAVETVATSG-LDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTK 250 (349)
T ss_pred C-----CcEEEEeCccccCC--HHHHHHHHHcC-CCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence 3 56777777765522 22333444444 6789999997 899999999 7899999999999999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHHH
Q 007001 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409 (622)
Q Consensus 343 td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R~~~L~~l~~~ 409 (622)
++||+|| |||++|+.++++++++++++.+.+.+|. +|...- + .|..-+.-+.++.+.+...+
T Consensus 251 Sg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL-~Ps~~h--~-~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 251 TSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYL-RPTKRH--L-PVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred EeEEEec-CCCHHHHHHHHHHHHHcCCCEEeecccc-CCCcce--e-eeecccCHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999998885 443211 1 22222333445556666554
No 59
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.83 E-value=4.9e-19 Score=196.22 Aligned_cols=187 Identities=19% Similarity=0.286 Sum_probs=149.4
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC---cCCCCHHHHHHHHHHHHH-----CCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLN 257 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~---~rsr~~e~Iv~Ei~~L~~-----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~ 257 (622)
..||.|=. |+++|.||..+...+. .+...++.+++|++.+.. .+++.|+|.|++.+.... ..+.+|++
T Consensus 51 ~lYiHiPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~---~~l~~ll~ 126 (455)
T TIGR00538 51 SLYVHIPF-CHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSP---EQISRLMK 126 (455)
T ss_pred EEEEEeCC-ccCcCCCCCCCccCCCCcchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCH---HHHHHHHH
Confidence 34555555 9999999998765432 223358999999998643 378889998876665433 35788888
Q ss_pred HHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC
Q 007001 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP 337 (622)
Q Consensus 258 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p 337 (622)
.+.+.++......+++. ++|..+++.. +..+. ..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++
T Consensus 127 ~i~~~~~~~~~~eitie-~np~~l~~e~--l~~lk-~~G-~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~-- 199 (455)
T TIGR00538 127 LIRENFPFNADAEISIE-IDPRYITKDV--IDALR-DEG-FNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREA-- 199 (455)
T ss_pred HHHHhCCCCCCCeEEEE-eccCcCCHHH--HHHHH-HcC-CCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc--
Confidence 88775542233467776 7898887643 44444 344 79999999999999999999999999999999999999
Q ss_pred CCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCC
Q 007001 338 GMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383 (622)
Q Consensus 338 gi~-i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGT 383 (622)
|+. +..|||+|+||||.++|.++++++.+++++++.++.|++.|++
T Consensus 200 G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~ 246 (455)
T TIGR00538 200 GFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWV 246 (455)
T ss_pred CCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccch
Confidence 984 8999999999999999999999999999999999999998875
No 60
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=99.83 E-value=1.6e-20 Score=165.42 Aligned_cols=85 Identities=42% Similarity=0.654 Sum_probs=73.4
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------hHHHHHHHHHHhcCC---CcEEEEccccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------QSAMDTLIAKCKSAK---KPLVVAGCVPQ 129 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------~~~~~~ii~~~k~~~---~~VVVgGC~aq 129 (622)
||||+||||+||++|||.|.+.|.+.||++++++++||+++||| ++++++.++++++.+ ++|||+||+||
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq 80 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQ 80 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccc
Confidence 68999999999999999999999999999999999999999999 556666677666554 78999999999
Q ss_pred cchh-hh-ccc-ccEEEc
Q 007001 130 GSRD-LK-ELE-GVSIVG 144 (622)
Q Consensus 130 ~~pe-~~-~~~-~d~VvG 144 (622)
.+++ +. ..+ +|.|+|
T Consensus 81 ~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 81 RYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cChHHHHhhCCCeEEEeC
Confidence 9996 44 445 577887
No 61
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.82 E-value=7.7e-19 Score=194.52 Aligned_cols=188 Identities=17% Similarity=0.239 Sum_probs=148.4
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCC-C--cCCCCHHHHHHHHHHHHHC-----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 007001 185 FVEILPINVGCLGACTYCKTKHARG-H--LGSYTVESLVGRVRTVIAD-----GVKEVWLSSEDTGAYGRDIGVNLPILL 256 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG-~--~rsr~~e~Iv~Ei~~L~~~-----GvkeI~L~g~d~~~yg~d~~~~l~eLL 256 (622)
...||.|-. |+++|.||....... + ....-++.+++||+.+.+. ++..|+|.|++.+.+.. ..+.+|+
T Consensus 51 ~~LYvHIPf-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~---~~l~~ll 126 (453)
T PRK13347 51 VSLYLHVPF-CRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNP---DQFERLM 126 (453)
T ss_pred eEEEEEeCC-ccccCCCCCCcCcCccccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCH---HHHHHHH
Confidence 456788877 999999998764321 1 1112368899999876542 56789998877666543 3578888
Q ss_pred HHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 007001 257 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336 (622)
Q Consensus 257 ~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 336 (622)
+.+.+.++......+.+. ++|..+++.. +..+ +..+ +++++||+||+++++|+.|+|.++.+++.++++.++++
T Consensus 127 ~~i~~~~~~~~~~e~tie-~~p~~lt~e~--l~~L-~~~G-~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~- 200 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVE-IDPRTVTAEM--LQAL-AALG-FNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAA- 200 (453)
T ss_pred HHHHHhCCCCCCceEEEE-eccccCCHHH--HHHH-HHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhc-
Confidence 888776542234567776 7999887643 4433 3444 79999999999999999999999999999999999999
Q ss_pred CCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCC
Q 007001 337 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383 (622)
Q Consensus 337 pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGT 383 (622)
|+. +..|||+|+||||.++|.+|++++.+++++++.++.|+..|++
T Consensus 201 -G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~ 247 (453)
T PRK13347 201 -GFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSR 247 (453)
T ss_pred -CCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccch
Confidence 885 8999999999999999999999999999999999999866654
No 62
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.82 E-value=8.5e-19 Score=194.21 Aligned_cols=186 Identities=19% Similarity=0.260 Sum_probs=147.7
Q ss_pred EEEEeCCCCCCCCCCcccCccCCC---cCCCCHHHHHHHHHHHHH-----CCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIA-----DGVKEVWLSSEDTGAYGRDIGVNLPILLNA 258 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG~---~rsr~~e~Iv~Ei~~L~~-----~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 258 (622)
.||.|-. |+++|+||..+...+. ...+.++.+++|++.+.+ .++..|.|.|++.+.... ..+.+|++.
T Consensus 52 LYvHIPF-C~~~C~yC~~~~~~~~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~---~~l~~ll~~ 127 (453)
T PRK09249 52 LYVHIPF-CRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSP---EQLRRLMAL 127 (453)
T ss_pred EEEEeCC-ccccCCCCCCcccCCCCcchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCH---HHHHHHHHH
Confidence 3455433 9999999988754332 222457899999997654 257788888876555433 357888888
Q ss_pred HHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 259 l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
+.+.++......+.+. ++|..+++.. +..+ +..+ +++|+||+||+++++|+.|+|+++.+++.++++.++++ |
T Consensus 128 l~~~~~~~~~~e~tie-~np~~lt~e~--l~~l-~~aG-~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~--G 200 (453)
T PRK09249 128 LREHFNFAPDAEISIE-IDPRELDLEM--LDAL-RELG-FNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAAREL--G 200 (453)
T ss_pred HHHhCCCCCCCEEEEE-ecCCcCCHHH--HHHH-HHcC-CCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 8776542234567776 7998887643 4434 3444 89999999999999999999999999999999999999 9
Q ss_pred C-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCC
Q 007001 339 M-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383 (622)
Q Consensus 339 i-~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGT 383 (622)
+ .+..|+|+|+||||.++++++++++.+++++++.++.|++.|++
T Consensus 201 ~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~l~~~p~~ 246 (453)
T PRK09249 201 FTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWL 246 (453)
T ss_pred CCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEccCccchhh
Confidence 8 89999999999999999999999999999999999999977776
No 63
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.81 E-value=8e-19 Score=185.26 Aligned_cols=189 Identities=16% Similarity=0.288 Sum_probs=144.1
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 187 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
.+|.+++||+++|.||......+ +.+.+++|+|+++++...+.|+++|.|+|++...+.. ..+.++++.|.+..+
T Consensus 7 ~~i~~T~~C~~~C~FC~~~~~~~~~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~---~~~~~i~~~Ik~~~~ 83 (309)
T TIGR00423 7 RNINFTNICVGKCKFCAFRAREKDKDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDI---EYYEELFRAIKQEFP 83 (309)
T ss_pred eeecCccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 36889999999999999875443 3567899999999999999999999999765443322 246788888877543
Q ss_pred CCCceeEEEeecCCcchh---H----HHHHHHHHHhCCCCceee-cccCCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHh
Q 007001 265 PDGSTMLRIGMTNPPFIL---E----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~---~----~l~el~~l~~~~~v~~~l-~IGlQSgsd~vLk~M-nR~~t~e~~~~~I~~lr~~ 335 (622)
...+..+ .+.++. . ..++..+.++.++ +..+ +.|+|++++++++.+ +++.+.++++++++.+++.
T Consensus 84 --~i~~~~~---s~~e~~~~~~~~g~~~~e~l~~LkeAG-l~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 84 --DVHIHAF---SPMEVYFLAKNEGLSIEEVLKRLKKAG-LDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred --CceEEec---CHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 2333222 221110 0 0123334444555 5666 579999999999888 6678999999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeC----CCCc-ccc
Q 007001 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTP-AAR 387 (622)
Q Consensus 336 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~----PGTp-a~~ 387 (622)
|+.+.+++|+|+| ||.+|+.+++.++++++.+..++..|.|. +||| +..
T Consensus 158 --Gi~~~s~~iiG~~-Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~ 211 (309)
T TIGR00423 158 --GIPTTATMMFGHV-ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEG 211 (309)
T ss_pred --CCCceeeEEecCC-CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhcc
Confidence 9999999999986 89999999999999999888888777775 4888 544
No 64
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=99.80 E-value=9.6e-19 Score=185.69 Aligned_cols=195 Identities=18% Similarity=0.243 Sum_probs=146.4
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-CC
Q 007001 186 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GV 250 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg------------~d~-~~ 250 (622)
..+|++++||+++|+||.++..+|. .+.+++|+|+++++.+.+.|++++.++++.-.... .+. ..
T Consensus 5 n~~i~~tn~C~~~C~fCaf~~~~g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~ 84 (322)
T TIGR03550 5 NVFIPLTRLCRNRCGYCTFRRPPGELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLE 84 (322)
T ss_pred eEEeccccCcCCCCccCCccccCCCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHH
Confidence 4588999999999999999887775 45899999999999999999999999854322211 000 02
Q ss_pred CHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCC----CHHHHH
Q 007001 251 NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY----TLSDFR 326 (622)
Q Consensus 251 ~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~----t~e~~~ 326 (622)
.+.++++.+.++.. . +..+++..+++.. +..+. ..+ . .+++.+|+.++.+++.|++.+ +.++.+
T Consensus 85 ~~~~~~~~i~~e~~---~----~~~~~~g~lt~e~--l~~Lk-~aG-~-~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l 152 (322)
T TIGR03550 85 YLRELCELALEETG---L----LPHTNPGVMSRDE--LARLK-PVN-A-SMGLMLETTSERLCKGEAHYGSPGKDPAVRL 152 (322)
T ss_pred HHHHHHHHHHHhcC---C----ccccCCCCCCHHH--HHHHH-hhC-C-CCCcchhhhccccccccccCCCCCCCHHHHH
Confidence 34455555553321 1 2224555555532 44343 333 2 468889999999888786655 457889
Q ss_pred HHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEEeeeCCCCccccCCCCCHHH
Q 007001 327 TVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAARMKKVPSAV 395 (622)
Q Consensus 327 ~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~-----~d~v~i~~ysP~PGTpa~~~~~v~~~~ 395 (622)
+.++.+++. |+.+.+++|+|+ |||++|+.+++.++++++ +..+.+++|.|.||||+...+.++...
T Consensus 153 ~~i~~a~~~--Gi~~~s~~i~G~-gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e 223 (322)
T TIGR03550 153 ETIEDAGRL--KIPFTTGILIGI-GETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEE 223 (322)
T ss_pred HHHHHHHHc--CCCccceeeEeC-CCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHH
Confidence 999999999 999999999997 999999999999999997 677778999999999998877666543
No 65
>PRK06267 hypothetical protein; Provisional
Probab=99.79 E-value=5.7e-18 Score=181.67 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=146.7
Q ss_pred EEEEEeCCCCC--CCCCCcccCccCC-----CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 007001 186 VEILPINVGCL--GACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNA 258 (622)
Q Consensus 186 ~a~I~isrGC~--~~CsFC~ip~~rG-----~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 258 (622)
.+.|..|.+|+ ++|+||..+...+ ..+.+++|+|++|++.+.+.|++.+.++|+.. +.. ..+.++++.
T Consensus 28 ~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~--~~~---~el~~i~e~ 102 (350)
T PRK06267 28 ERALFLGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGGYG--YTT---EEINDIAEM 102 (350)
T ss_pred EEeeeecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecCCC--CCH---HHHHHHHHH
Confidence 45677899999 9999998876433 24678999999999999999999887776542 222 346677777
Q ss_pred HHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 259 l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
+...-. ...++.++.+++. ++. .... ..+..++||.++++++.++++++.+++.++++.++++ |
T Consensus 103 I~~~~~--~~~~~s~G~~d~~-------~~~-~~~l----~Gv~g~~ET~~~~~~~~i~~~~s~ed~~~~l~~ak~a--G 166 (350)
T PRK06267 103 IAYIQG--CKQYLNVGIIDFL-------NIN-LNEI----EGVVGAVETVNPKLHREICPGKPLDKIKEMLLKAKDL--G 166 (350)
T ss_pred HHHhhC--CceEeecccCCHH-------HHh-hccc----cCceeeeecCCHHHHHhhCCCCCHHHHHHHHHHHHHc--C
Confidence 754311 1235554433221 111 1112 2345789999999999999999999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHH
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 395 (622)
+.+.+++|+|+ |||.+|+.++++++++++++.+.+++|+|.||||++..+.++...
T Consensus 167 i~v~~g~IiGl-gEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e 222 (350)
T PRK06267 167 LKTGITIILGL-GETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLE 222 (350)
T ss_pred CeeeeeEEEeC-CCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHH
Confidence 99999999996 999999999999999999999999999999999998877666544
No 66
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.79 E-value=8e-18 Score=187.78 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=147.6
Q ss_pred CCCCC-CCCCccc-------Cc-c--------CC-CcCCCCHHHHHHHHHHHHHCC--C--cEEEEeecCCCCCCCCcCC
Q 007001 193 VGCLG-ACTYCKT-------KH-A--------RG-HLGSYTVESLVGRVRTVIADG--V--KEVWLSSEDTGAYGRDIGV 250 (622)
Q Consensus 193 rGC~~-~CsFC~i-------p~-~--------rG-~~rsr~~e~Iv~Ei~~L~~~G--v--keI~L~g~d~~~yg~d~~~ 250 (622)
--||+ .|.||-- |. . |+ +.+..|..++.++++++...| + -|+.|.|++++++..+.
T Consensus 76 ~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y-- 153 (522)
T TIGR01211 76 HRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDY-- 153 (522)
T ss_pred ccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHH--
Confidence 44995 6999953 11 1 11 345678899999999999866 3 25689999999887654
Q ss_pred CHHHHHHHHHHhCCC----------------------CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCC
Q 007001 251 NLPILLNAIVAELPP----------------------DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSG 308 (622)
Q Consensus 251 ~l~eLL~~l~~~l~~----------------------~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSg 308 (622)
...+++.+.+.++. .....++++ ++|+.+++.. +..|.+. + ++++.+|+||+
T Consensus 154 -~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE-tRPD~i~~e~--L~~L~~~-G-~~rVslGVQS~ 227 (522)
T TIGR01211 154 -QEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE-TRPDYCREEH--IDRMLKL-G-ATRVELGVQTI 227 (522)
T ss_pred -HHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE-EcCCcCCHHH--HHHHHHc-C-CCEEEEECccC
Confidence 33444444433321 013456666 6999887743 5544443 3 79999999999
Q ss_pred CHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh---cCCCeEEEEEeeeCCCCcc
Q 007001 309 SDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE---YKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 309 sd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e---l~~d~v~i~~ysP~PGTpa 385 (622)
++++|+.|||+++.+++.++++.++++ |+.+..|||+|+||||.+++.+|++.+.+ ++++.+.++++.+.|||++
T Consensus 228 ~d~VL~~inRght~~~v~~Ai~~lr~~--G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L 305 (522)
T TIGR01211 228 YNDILERTKRGHTVRDVVEATRLLRDA--GLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTEL 305 (522)
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHH
Confidence 999999999999999999999999999 99999999999999999999999999985 8999999999999999999
Q ss_pred ccCC
Q 007001 386 ARMK 389 (622)
Q Consensus 386 ~~~~ 389 (622)
+++.
T Consensus 306 ~~~~ 309 (522)
T TIGR01211 306 YELW 309 (522)
T ss_pred HHHH
Confidence 9764
No 67
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.78 E-value=4e-18 Score=182.46 Aligned_cols=190 Identities=17% Similarity=0.297 Sum_probs=145.9
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 187 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
..|.+++||+++|.||......+ +.+.+++|+|+++++.+.+.|+++|.|+|++.+.+.. ..+.++++.|.+..+
T Consensus 41 ~~i~~T~~C~~~C~FC~~~~~~~~~~~y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~i~~~Ik~~~~ 117 (343)
T TIGR03551 41 RNINFTNVCYGGCGFCAFRKRKGDADAYLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDG---DFYLDILRAVKEEVP 117 (343)
T ss_pred eccccccccccCCccCCCccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 35778999999999999865443 2234799999999999999999999999765443322 245788888877644
Q ss_pred CCCceeEEEee-------cCCcchhHHHHHHHHHHhCCCCceeec-ccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHh
Q 007001 265 PDGSTMLRIGM-------TNPPFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIEL 335 (622)
Q Consensus 265 ~~~~~~iri~~-------~~p~~i~~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~ 335 (622)
+..+..++- ......++ +.+..|. .++ +..++ .+.|++++++++.+.++ .+.+++.++++.++++
T Consensus 118 --~i~~~~~t~~ei~~~~~~~g~~~~--e~l~~Lk-eAG-l~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~ 191 (343)
T TIGR03551 118 --GMHIHAFSPMEVYYGARNSGLSVE--EALKRLK-EAG-LDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKL 191 (343)
T ss_pred --CceEEecCHHHHHHHHHHcCCCHH--HHHHHHH-HhC-cccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHc
Confidence 333322110 01111222 2234343 344 56676 57899999999999986 5999999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCC----CCccccC
Q 007001 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARM 388 (622)
Q Consensus 336 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~P----GTpa~~~ 388 (622)
|+.+.+.+|+|+| ||.+|+.+++.++++++.+..++..|.|.| |||+++.
T Consensus 192 --Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~ 245 (343)
T TIGR03551 192 --GIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLK 245 (343)
T ss_pred --CCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccc
Confidence 9999999999986 999999999999999999999999999987 9999854
No 68
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.78 E-value=1e-17 Score=183.22 Aligned_cols=213 Identities=21% Similarity=0.281 Sum_probs=160.8
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCC---cCCCCHHHHHHHHHHHHHCC-----CcEEEEeecCCCCCCCCcCCCHHHHH
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGH---LGSYTVESLVGRVRTVIADG-----VKEVWLSSEDTGAYGRDIGVNLPILL 256 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~---~rsr~~e~Iv~Ei~~L~~~G-----vkeI~L~g~d~~~yg~d~~~~l~eLL 256 (622)
...||.|= =|...|.||..+..... ....-.+.+++|++...... ++.|+|.|+..+.... ..+..|+
T Consensus 35 ~slYiHiP-FC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~---~~l~~ll 110 (416)
T COG0635 35 LSLYIHIP-FCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSP---EQLERLL 110 (416)
T ss_pred eEEEEEcc-cccccCCCCCCeeeccCCCChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCH---HHHHHHH
Confidence 33444432 39999999998754322 11123567788888766642 5677887765554433 4678888
Q ss_pred HHHHHhCC-CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007001 257 NAIVAELP-PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 257 ~~l~~~l~-~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
..|.+.++ ......+++. ++|..++... +..+. ..+ ++++++||||+++++||.++|.++.++..+++..+++.
T Consensus 111 ~~l~~~~~~~~~~~EitiE-~nP~~~~~e~--~~~l~-~~G-vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~ 185 (416)
T COG0635 111 KALRELFNDLDPDAEITIE-ANPGTVEAEK--FKALK-EAG-VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKA 185 (416)
T ss_pred HHHHHhcccCCCCceEEEE-eCCCCCCHHH--HHHHH-HcC-CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 88887772 3355889998 6999887643 44444 344 68999999999999999999999999999999999998
Q ss_pred CCCC-EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-C---CCHHH-HHHHHHHHHHHHH
Q 007001 336 VPGM-QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-K---VPSAV-VKKRSRELTSVFE 408 (622)
Q Consensus 336 ~pgi-~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~---v~~~~-~k~R~~~L~~l~~ 408 (622)
|+ .++.|+|+|+|++|.++|.++++.+.+++++++.+|.|+..|+|++++.. + +|+.. +.++.+...+...
T Consensus 186 --g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 186 --GFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred --CCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 64 57889999999999999999999999999999999999999999999875 3 55443 3444444444444
No 69
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.77 E-value=3.1e-17 Score=165.41 Aligned_cols=192 Identities=20% Similarity=0.348 Sum_probs=141.6
Q ss_pred EEEeCCCCCCC--------CCCcccCccC--CCcCCCCH-HHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHH
Q 007001 188 ILPINVGCLGA--------CTYCKTKHAR--GHLGSYTV-ESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPI 254 (622)
Q Consensus 188 ~I~isrGC~~~--------CsFC~ip~~r--G~~rsr~~-e~Iv~Ei~~L~~~--GvkeI~L~g~d~~~yg~d~~~~l~e 254 (622)
.|-.+-.||++ |+||...... .-.+..|+ +++-++++.+.+. +.+.|..+-.-+++|.. .+
T Consensus 27 ~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyAp------ve 100 (312)
T COG1242 27 TLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAP------VE 100 (312)
T ss_pred eccCCCCCCCCCCcccCCceeeecCCCCCccccCcccCHHHHHHHHHHHHHHhhcCCcEEEEEeccccccCc------HH
Confidence 34456668875 9999765321 11233344 3444555545442 33444443233455532 45
Q ss_pred HHHHHHH-hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHH
Q 007001 255 LLNAIVA-ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLI 333 (622)
Q Consensus 255 LL~~l~~-~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr 333 (622)
.|+++.+ .+...+...+.++ ++|+.+.+..-++++-.... ..-++.+|+||.++++|+++||+|+.+.|.+++.++|
T Consensus 101 vLre~ye~aL~~~~VVGLsIg-TRPDClpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~r 178 (312)
T COG1242 101 VLREMYEQALSEAGVVGLSIG-TRPDCLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLR 178 (312)
T ss_pred HHHHHHHHHhCcCCeeEEeec-CCCCCCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHH
Confidence 5554443 2333467788887 89998877654443333332 4679999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC
Q 007001 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389 (622)
Q Consensus 334 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~ 389 (622)
++ ||.+.+++|+|+||||.+++.+|++.+..++++-+-++++....|||+.++.
T Consensus 179 kr--gIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y 232 (312)
T COG1242 179 KR--GIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMY 232 (312)
T ss_pred Hc--CCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHH
Confidence 99 9999999999999999999999999999999999999999999999998875
No 70
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.77 E-value=2.3e-17 Score=158.38 Aligned_cols=185 Identities=24% Similarity=0.392 Sum_probs=147.1
Q ss_pred EEeCCCCCCCCCCcccCccCCCcCCCCH--HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 007001 189 LPINVGCLGACTYCKTKHARGHLGSYTV--ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 266 (622)
Q Consensus 189 I~isrGC~~~CsFC~ip~~rG~~rsr~~--e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~ 266 (622)
+.+++||+++|+||..+...+.....+. +.+.+.+......+.+.+.++|++...+. .+.++++.+.+..+
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ggep~~~~-----~~~~~i~~~~~~~~-- 73 (204)
T cd01335 1 LELTRGCNLNCGFCSNPASKGRGPESPPEIEEILDIVLEAKERGVEVVILTGGEPLLYP-----ELAELLRRLKKELP-- 73 (204)
T ss_pred CccCCccCCcCCCCCCCCCCCCCccccccHHHHHHHHHHHHhcCceEEEEeCCcCCccH-----hHHHHHHHHHhhCC--
Confidence 3578999999999999877654433333 46666666666778899999887776653 46888888876432
Q ss_pred CceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 007001 267 GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPGMQIATDI 345 (622)
Q Consensus 267 ~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr~~~pgi~i~td~ 345 (622)
...+++. ++...+++.. +..+... + +..+.++++|.++.+++.++ ++.+.+++.++++.+++. ++.+.+.+
T Consensus 74 -~~~~~i~-T~~~~~~~~~--~~~l~~~-g-~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~ 145 (204)
T cd01335 74 -GFEISIE-TNGTLLTEEL--LKELKEL-G-LDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREA--GLGLSTTL 145 (204)
T ss_pred -CceEEEE-cCcccCCHHH--HHHHHhC-C-CceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHc--CCCceEEE
Confidence 3456664 4554433322 4444443 2 67999999999999999998 788999999999999999 99999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeeCCCCccccC
Q 007001 346 ICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 346 IvGfPGETeedf~eTl~fl~el~-~d~v~i~~ysP~PGTpa~~~ 388 (622)
|+|.|+++.+++.++++++.+.. ++.+++++|.|.||||++..
T Consensus 146 i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~~~ 189 (204)
T cd01335 146 LVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA 189 (204)
T ss_pred EEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeeeec
Confidence 99999999999999999999998 99999999999999999833
No 71
>PRK08445 hypothetical protein; Provisional
Probab=99.76 E-value=2e-17 Score=177.18 Aligned_cols=191 Identities=16% Similarity=0.193 Sum_probs=143.9
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 188 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
.|.+|.||+++|+||......+ ..+.+++|+|++.++.+.+.|.++|++.|++...+.. ..+.++++.|.+.+|
T Consensus 45 ~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~---e~~~~l~~~Ik~~~p- 120 (348)
T PRK08445 45 NINYTNICWVDCKFCAFYRHLKEDDAYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKI---EWYENLVSHIAQKYP- 120 (348)
T ss_pred ccccccccccCCccCCCccCCCCCCCeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 5788999999999999875432 2235699999999999999999999999866555433 356888999988775
Q ss_pred CCceeEEEeecCCcchhH----HHHHHHHHHhCCCCceee-cccCCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCC
Q 007001 266 DGSTMLRIGMTNPPFILE----HLKEIAEVLRHPCVYSFL-HVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGM 339 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i~~----~l~el~~l~~~~~v~~~l-~IGlQSgsd~vLk~M-nR~~t~e~~~~~I~~lr~~~pgi 339 (622)
...+..++..+.+.+.. ..++..+.++..+ +.++ ++|+||+++++++.+ +++.+.++++++++.++++ |+
T Consensus 121 -~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAG-l~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~--Gi 196 (348)
T PRK08445 121 -TITIHGFSAVEIDYIAKISKISIKEVLERLQAKG-LSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLI--GM 196 (348)
T ss_pred -CcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcC-CCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHc--CC
Confidence 34433332222222211 0123333344555 4565 699999999999999 7789999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEE-----EEeeeCCCCccccC
Q 007001 340 QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI-----SQFYPRPGTPAARM 388 (622)
Q Consensus 340 ~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i-----~~ysP~PGTpa~~~ 388 (622)
.+.+.+|+|+ +||.+|+.+.+.++++++.+...+ ..|.| ||||++..
T Consensus 197 ~~~sg~i~G~-~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p-~~tpl~~~ 248 (348)
T PRK08445 197 KSTATMMFGT-VENDEEIIEHWERIRDLQDETGGFRAFILWSFQP-DNTPLKEE 248 (348)
T ss_pred eeeeEEEecC-CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCC-CCCccccc
Confidence 9999999997 699999999999999998765333 34445 99999753
No 72
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.75 E-value=2.5e-17 Score=175.99 Aligned_cols=195 Identities=21% Similarity=0.282 Sum_probs=144.5
Q ss_pred EEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 188 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
.+.++.||+++|+||.+....+. .+.+++++|+++++.+.+.|+++|.|+|........ ..+.++++.|.+..+
T Consensus 44 ~i~~s~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~---~~~~~li~~Ik~~~~- 119 (340)
T TIGR03699 44 NINYTNICVVGCKFCAFYRAPGHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGL---DYYEDLFRAIKARFP- 119 (340)
T ss_pred ccccchhhccCCccCCcccCCCCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 46679999999999986544442 346899999999999999999999999764433222 235678888876533
Q ss_pred CCceeEEEeecCCcchh------H-HHHHHHHHHhCCCCceeec-ccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhC
Q 007001 266 DGSTMLRIGMTNPPFIL------E-HLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 336 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i~------~-~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~ 336 (622)
...+.. ..+..+. . ..++..+.++..+ +.+++ .|+|+.++++++.+.+ +.+.+++.++++.++++
T Consensus 120 -~i~~~~---~s~~ei~~~~~~~g~~~~e~l~~Lk~aG-~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~- 193 (340)
T TIGR03699 120 -HIHIHS---FSPVEIVYIAKKEGLSLREVLERLKEAG-LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKL- 193 (340)
T ss_pred -CcCCCC---CCHHHHHHHhccCCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHc-
Confidence 222211 1221111 0 0123334444555 45666 6999999999999954 57999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeC----CCCccccCCCCCHH
Q 007001 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSA 394 (622)
Q Consensus 337 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~----PGTpa~~~~~v~~~ 394 (622)
|+.+.+++|+|+ |||.+|..+++.++++++.+...+..|.|. +|||+++.+..+..
T Consensus 194 -Gi~v~~~~iiGl-gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~ 253 (340)
T TIGR03699 194 -GLPTTATMMFGH-VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATST 253 (340)
T ss_pred -CCCccceeEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHH
Confidence 999999999996 999999999999999999988788777774 79999876655544
No 73
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=99.75 E-value=2.5e-17 Score=176.83 Aligned_cols=197 Identities=17% Similarity=0.208 Sum_probs=148.6
Q ss_pred EEEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 187 EILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
.+|..+.||+++|+||.+....+. ...+++|+|+++++...+.|++++.|++.+...+.. ..+.++++.|.+.+|
T Consensus 50 ~~in~Tn~C~~~C~FCa~~~~~~~~~~y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~---~~~~e~i~~Ik~~~p 126 (351)
T TIGR03700 50 RHLNYTNICVNGCAFCAFQRERGEPGAYAMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPF---EWYLDMIRTLKEAYP 126 (351)
T ss_pred CCcccccccccCCccCceeCCCCCcccCCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCH---HHHHHHHHHHHHHCC
Confidence 357899999999999998754441 223799999999999999999999999765433221 356788888877654
Q ss_pred CCCceeEEEeecCCcchh-------HHHHHHHHHHhCCCCceeec-ccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHh
Q 007001 265 PDGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIEL 335 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~ 335 (622)
. +.+....|..+. ...++..+.++..+ +..++ .|+||+++++++.+.++ .+.++++++++.++++
T Consensus 127 --~---i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAG-ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~ 200 (351)
T TIGR03700 127 --D---LHVKAFTAVEIHHFSKISGLPTEEVLDELKEAG-LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHEL 200 (351)
T ss_pred --C---ceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcC-CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHc
Confidence 2 233322222111 01123223333444 45554 79999999999999886 5788999999999999
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeC----CCCccccC--CCCCHHH
Q 007001 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM--KKVPSAV 395 (622)
Q Consensus 336 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~----PGTpa~~~--~~v~~~~ 395 (622)
|+.+.+.+|+|+ |||.+|..+.+..+++++.+..++..|.|. +|||+... +..+..+
T Consensus 201 --Gi~~~sg~i~Gl-gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e 263 (351)
T TIGR03700 201 --GLKTNATMLYGH-IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLD 263 (351)
T ss_pred --CCCcceEEEeeC-CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHH
Confidence 999999999997 999999999999999999999999999999 59999876 4555543
No 74
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.74 E-value=3e-17 Score=153.49 Aligned_cols=162 Identities=20% Similarity=0.377 Sum_probs=127.1
Q ss_pred EEeCCCCCCCCCCcccCc--cCCCcCCCCHHHHHHHHHHH-HHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 189 LPINVGCLGACTYCKTKH--ARGHLGSYTVESLVGRVRTV-IADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 189 I~isrGC~~~CsFC~ip~--~rG~~rsr~~e~Iv~Ei~~L-~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
|++++||+++|.||..+. ..+..+.+++++++++++.+ ...|...+.++|+++..+ .++.+++..+.+...
T Consensus 1 i~~~~~C~~~C~fC~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~-----~~~~~~~~~~~~~~~- 74 (166)
T PF04055_consen 1 IETTRGCNLNCSFCYYPRSRRKNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLH-----PDFIELLELLRKIKK- 74 (166)
T ss_dssp EEEESEESS--TTTSTTTTCCTCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGS-----CHHHHHHHHHHHCTC-
T ss_pred CEECcCcCccCCCCCCCccCCCcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcc-----hhHHHHHHHHHHhhc-
Confidence 578999999999999987 45567889999999999999 588888888887776655 245777777766421
Q ss_pred CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHH-HHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 007001 266 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA-VLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~-vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td 344 (622)
....+.+. +++....+ +.+..+.+.+ +.++.+++||.+++ +++.|+++.+.+++.++++.++++ |+.....
T Consensus 75 -~~~~i~~~-t~~~~~~~--~~l~~l~~~~--~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--g~~~~~~ 146 (166)
T PF04055_consen 75 -RGIRISIN-TNGTLLDE--ELLDELKKLG--VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEA--GIPRVII 146 (166)
T ss_dssp -TTEEEEEE-EESTTHCH--HHHHHHHHTT--CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHT--TSETEEE
T ss_pred -cccceeee-ccccchhH--HHHHHHHhcC--ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHc--CCCcEEE
Confidence 23455554 44444422 2244444444 67999999999999 999999999999999999999999 8776789
Q ss_pred EEEcCCCCCHHHHHHHHHHH
Q 007001 345 IICGFPGETDEDFNQTVNLI 364 (622)
Q Consensus 345 ~IvGfPGETeedf~eTl~fl 364 (622)
+|+|+||||+++++++++|+
T Consensus 147 ~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 147 FIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp EEEEBTTTSHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHhCcC
Confidence 99999999999999999986
No 75
>PRK08508 biotin synthase; Provisional
Probab=99.73 E-value=1.8e-16 Score=165.13 Aligned_cols=187 Identities=17% Similarity=0.240 Sum_probs=141.2
Q ss_pred eCCCCCCCCCCcccCccC-C---CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 007001 191 INVGCLGACTYCKTKHAR-G---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 266 (622)
Q Consensus 191 isrGC~~~CsFC~ip~~r-G---~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~ 266 (622)
.+.||+++|.||..+... + .++.+++|+|+++++...+.|+++|.+++.... +....-..+.++++.+.+..+
T Consensus 13 ~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~-~~~~~~e~~~ei~~~ik~~~p-- 89 (279)
T PRK08508 13 SSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRG-LDDKKLEYVAEAAKAVKKEVP-- 89 (279)
T ss_pred ccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCC-CCcccHHHHHHHHHHHHhhCC--
Confidence 489999999999987543 2 355679999999999999999999988643222 111111245666777765433
Q ss_pred Ccee-EEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Q 007001 267 GSTM-LRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI 345 (622)
Q Consensus 267 ~~~~-iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~ 345 (622)
+..+ ...++. +. +.+.++. .++ +..+++++|+ ++++++.+..+++.++..+.++.++++ |+.+.+.+
T Consensus 90 ~l~i~~s~G~~-----~~--e~l~~Lk-~aG-ld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~sg~ 157 (279)
T PRK08508 90 GLHLIACNGTA-----SV--EQLKELK-KAG-IFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEA--GLGLCSGG 157 (279)
T ss_pred CcEEEecCCCC-----CH--HHHHHHH-HcC-CCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHc--CCeeccee
Confidence 2222 122222 22 2244443 333 7899999999 578899898899999999999999999 99999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHH
Q 007001 346 ICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394 (622)
Q Consensus 346 IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~ 394 (622)
|+|+ |||.+|..+++.++++++++.+-+..|.|.||||+.. +..+..
T Consensus 158 I~Gl-GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~-~~~~~~ 204 (279)
T PRK08508 158 IFGL-GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA-PTLSAD 204 (279)
T ss_pred EEec-CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC-CCCCHH
Confidence 9997 9999999999999999999999999999999999864 334443
No 76
>PLN02389 biotin synthase
Probab=99.72 E-value=8.5e-16 Score=166.08 Aligned_cols=198 Identities=16% Similarity=0.237 Sum_probs=146.8
Q ss_pred cEEEEEe-CCCCCCCCCCcccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHH
Q 007001 185 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNA 258 (622)
Q Consensus 185 ~~a~I~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~ 258 (622)
+...+.+ +.||+.+|.||...... + .++..++|+|++.++.+.+.|+++|.++..-.+..+.+. ...+.++++.
T Consensus 82 ~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ 161 (379)
T PLN02389 82 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKE 161 (379)
T ss_pred EEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHH
Confidence 3456667 89999999999986432 2 245689999999999999999999988632111223221 1234555555
Q ss_pred HHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 259 l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
+.+ . +. .+ . .....++++ .+..+. ..+ +.++++.+++ +++..+.+..+++.+++++.++.+++. |
T Consensus 162 ik~-~---~l-~i--~-~s~G~l~~E--~l~~Lk-eAG-ld~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~--G 226 (379)
T PLN02389 162 IRG-M---GM-EV--C-CTLGMLEKE--QAAQLK-EAG-LTAYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREA--G 226 (379)
T ss_pred Hhc-C---Cc-EE--E-ECCCCCCHH--HHHHHH-HcC-CCEEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHc--C
Confidence 542 2 21 22 2 222223332 244443 344 6889999999 788999888889999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhc--CCCeEEEEEeeeCCCCccccCCCCCHHHHHH
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el--~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~ 398 (622)
+.+.+.+|+|+ |||.+|..+++.+++++ .++.+.+++|+|.||||+++.+.++..+..+
T Consensus 227 i~v~sg~IiGl-gEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr 287 (379)
T PLN02389 227 ISVCSGGIIGL-GEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVR 287 (379)
T ss_pred CeEeEEEEECC-CCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHH
Confidence 99999999999 99999999999999999 5789999999999999999887776654433
No 77
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.66 E-value=4.2e-15 Score=160.74 Aligned_cols=195 Identities=14% Similarity=0.142 Sum_probs=146.7
Q ss_pred EEEEEeCCCCCCCCCCcccCccCC-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 186 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG-~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
.+.|.++.+|+++|.||......+ +.+..++++|+++++.+.+.|+++|.|+++..... .+ -..+.++++.|.+.++
T Consensus 75 ~~~in~Tn~C~~~C~YC~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~-~~-~e~l~~~i~~Ik~~~p 152 (371)
T PRK09240 75 YTPLYLSNYCANDCTYCGFSMSNKIKRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAK-VG-VDYIRRALPIAREYFS 152 (371)
T ss_pred EeceEEcccccCcCCcCCCCCCCCCccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-CC-HHHHHHHHHHHHHhCC
Confidence 345677999999999999865433 23677999999999999999999999987543332 11 1245666666665443
Q ss_pred CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCCE-
Q 007001 265 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 340 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn---R~~t~e~~~~~I~~lr~~~pgi~- 340 (622)
.+.+. ..| ++. +++..+. ..+ +.++++++||.+++.++.+. ++++.++.++.++.++++ |+.
T Consensus 153 -----~i~i~-~g~--lt~--e~l~~Lk-~aG-v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 218 (371)
T PRK09240 153 -----SVSIE-VQP--LSE--EEYAELV-ELG-LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRA--GIRK 218 (371)
T ss_pred -----Cceec-cCC--CCH--HHHHHHH-HcC-CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 22332 233 232 2344444 344 68999999999999999995 578999999999999999 995
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCC------eEEEEEeeeCCCCccccCCCCCHHHHHH
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEYKFP------QVHISQFYPRPGTPAARMKKVPSAVVKK 398 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el~~d------~v~i~~ysP~PGTpa~~~~~v~~~~~k~ 398 (622)
+.+++|+|+ ||+.+|..+++..+++++.. .+.+..|.|.|| |+...+.+++.+..+
T Consensus 219 v~~g~i~Gl-ge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~ 280 (371)
T PRK09240 219 IGLGALLGL-SDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQ 280 (371)
T ss_pred eceEEEecC-CccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHH
Confidence 999999999 67999999999888888753 678889999999 887666777765443
No 78
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.63 E-value=7.7e-15 Score=156.78 Aligned_cols=212 Identities=20% Similarity=0.205 Sum_probs=153.7
Q ss_pred EEEEEeCCCCCC-CCCCcccCc------cC-C---------CcCCCCHHHHHHHHHHHHHCCCc----EEEEeecCCCCC
Q 007001 186 VEILPINVGCLG-ACTYCKTKH------AR-G---------HLGSYTVESLVGRVRTVIADGVK----EVWLSSEDTGAY 244 (622)
Q Consensus 186 ~a~I~isrGC~~-~CsFC~ip~------~r-G---------~~rsr~~e~Iv~Ei~~L~~~Gvk----eI~L~g~d~~~y 244 (622)
+|...--.|||+ +|.||.-.- .. | +.+.-|-.++...+++|...|.. |+.|.|+.|++.
T Consensus 68 VaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~ 147 (515)
T COG1243 68 VAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFTAL 147 (515)
T ss_pred EEEecCCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEecccccCC
Confidence 344445689998 899996541 11 1 12344677888899999887753 788889888877
Q ss_pred CCCcCCCHH-HHHHHHH----------HhCC--CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHH
Q 007001 245 GRDIGVNLP-ILLNAIV----------AELP--PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDA 311 (622)
Q Consensus 245 g~d~~~~l~-eLL~~l~----------~~l~--~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~ 311 (622)
..+....|. ..++++. ..-. ......++++ +.|+.+.+.. +..|++.+ ++.+.+|+||..|+
T Consensus 148 ~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiE-TRPD~~~ee~--ld~mlkyG--~TrVELGVQSiyd~ 222 (515)
T COG1243 148 SLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIE-TRPDYIDEEH--LDQMLKYG--VTRVELGVQSIYDD 222 (515)
T ss_pred CHHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEe-cCccccCHHH--HHHHHhcC--CcEEEEeeeeHHHH
Confidence 655432222 2222222 0000 0012347776 8999998744 66677665 78999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC---CCeEEEEEeeeCCCCccccC
Q 007001 312 VLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK---FPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 312 vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~---~d~v~i~~ysP~PGTpa~~~ 388 (622)
||++++||||.+++.++.+.++++ |+.+..++|.|+||-+.+-=.+++.-+-+.+ +|.+.|+|-...+||++++|
T Consensus 223 Vl~~~~RGHtvedv~~a~rLlKd~--GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~m 300 (515)
T COG1243 223 VLERTKRGHTVEDVVEATRLLKDA--GFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEM 300 (515)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc--CcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHHH
Confidence 999999999999999999999999 9999999999999988765555555555554 89999999999999999998
Q ss_pred C------CCCHHHHHHHHHHHH
Q 007001 389 K------KVPSAVVKKRSRELT 404 (622)
Q Consensus 389 ~------~v~~~~~k~R~~~L~ 404 (622)
+ ....++..+....+.
T Consensus 301 wk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 301 WKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred HHcCCCCCCCHHHHHHHHHHHH
Confidence 6 245665555554444
No 79
>PRK15108 biotin synthase; Provisional
Probab=99.63 E-value=3.1e-14 Score=152.58 Aligned_cols=194 Identities=18% Similarity=0.243 Sum_probs=144.3
Q ss_pred EEEEEe-CCCCCCCCCCcccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 186 VEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 186 ~a~I~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
...+.+ +.+|+.+|.||...... + +.+..++|+|++.++.+.+.|+++|.+.+........+ -..+.++++.+.
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~-~e~i~~~i~~ik 121 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERD-MPYLEQMVQGVK 121 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcch-HHHHHHHHHHHH
Confidence 345566 99999999999886422 2 24457999999999999999999997754211111111 123556666665
Q ss_pred HhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 007001 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340 (622)
Q Consensus 261 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~ 340 (622)
+ . +.. +.++ ...++. +.+.++. ..+ +.++++.++| +++....+..+++.++.++.++.+++. |+.
T Consensus 122 ~-~---~i~-v~~s---~G~ls~--e~l~~Lk-eAG-ld~~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~--G~~ 186 (345)
T PRK15108 122 A-M---GLE-TCMT---LGTLSE--SQAQRLA-NAG-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--GIK 186 (345)
T ss_pred h-C---CCE-EEEe---CCcCCH--HHHHHHH-HcC-CCEEeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHc--CCc
Confidence 3 2 222 2222 112332 2244444 333 6899999999 899999898889999999999999999 999
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhc--CCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMKKVPSAVV 396 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el--~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 396 (622)
+.+.+|+|+ |||.+|..+.+..++++ ..+.+.++.|.|.||||+.+.+.+++...
T Consensus 187 v~sg~i~Gl-gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~ 243 (345)
T PRK15108 187 VCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDF 243 (345)
T ss_pred eeeEEEEeC-CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHH
Confidence 999999998 99999999999999999 67789999999999999988776666543
No 80
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.60 E-value=3.4e-14 Score=153.52 Aligned_cols=198 Identities=12% Similarity=0.144 Sum_probs=144.9
Q ss_pred EEEEEeCCCCCCCCCCcccCccCC-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 186 VEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG-~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
.+.+..+.+|+++|.||......+ .....++|+|+++++.+.+.|+++|.++|+...... + ...+.++++.+.+..+
T Consensus 74 ~~~i~~Tn~C~~~C~yC~~s~~~~~~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~-~-~e~l~eii~~Ik~~~p 151 (366)
T TIGR02351 74 FTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKAA-G-VEYIAEAIKLAREYFS 151 (366)
T ss_pred EeeeeECccccCCCCcCCCCCCCCCccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCC-C-HHHHHHHHHHHHHhCC
Confidence 345678999999999999864322 224568999999999999999999999965332221 1 1246677777765432
Q ss_pred CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHHHhCCCCE-
Q 007001 265 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIELVPGMQ- 340 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn---R~~t~e~~~~~I~~lr~~~pgi~- 340 (622)
.+.+. +.| ++. +++..+.. .+ +.++++++||.+++.++.|+ +.++.++.++.++.++++ |+.
T Consensus 152 -----~i~Ie-i~~--lt~--e~~~~Lk~-aG-v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a--G~~~ 217 (366)
T TIGR02351 152 -----SLAIE-VQP--LNE--EEYKKLVE-AG-LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA--GMRK 217 (366)
T ss_pred -----ccccc-ccc--CCH--HHHHHHHH-cC-CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc--CCCe
Confidence 12222 222 333 23444443 34 68999999999999999987 678999999999999999 997
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCC------CeEEEEEeeeCCCCccccCCCCCHHHHHHHHH
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEYKF------PQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el~~------d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R~~ 401 (622)
+.+++|+|+| |+.+|..++...++.++. ..+.+..+.|.+| |+.....+++....+...
T Consensus 218 v~~g~i~Gl~-e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~ 282 (366)
T TIGR02351 218 IGIGALLGLD-DWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIIC 282 (366)
T ss_pred eceeEEEeCc-hhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHH
Confidence 8999999995 588887788777777754 5788889999999 876655777766555443
No 81
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.57 E-value=1.4e-13 Score=144.76 Aligned_cols=194 Identities=21% Similarity=0.321 Sum_probs=146.5
Q ss_pred cEEEEEeCCCC-CCCCCCcccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 007001 185 FVEILPINVGC-LGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 185 ~~a~I~isrGC-~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l 259 (622)
....|.+..|| |.+|.||...... | .+..+++++|+++++...+.|...+.+...--+ ++++ ...+.+.++.+
T Consensus 50 l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~-~~~i~~~v~~V 127 (335)
T COG0502 50 LSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRD-MEEVVEAIKAV 127 (335)
T ss_pred EEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-CCcc-HHHHHHHHHHH
Confidence 34567777776 9999999886432 2 356788999999999999999666666543222 2222 13455556666
Q ss_pred HHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 007001 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi 339 (622)
.+.+. -...+.+++++ +.. +.++. .++ ..+...-+|| |++..+.+--++|.++-.+.++.++++ |+
T Consensus 128 k~~~~--le~c~slG~l~-----~eq--~~~L~-~aG-vd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~--Gi 193 (335)
T COG0502 128 KEELG--LEVCASLGMLT-----EEQ--AEKLA-DAG-VDRYNHNLET-SPEFYENIITTRTYEDRLNTLENVREA--GI 193 (335)
T ss_pred HHhcC--cHHhhccCCCC-----HHH--HHHHH-HcC-hhheeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHc--CC
Confidence 54442 11234444333 211 33333 333 5788889999 999999999999999999999999999 99
Q ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeeCCCCccccCCCCCHHH
Q 007001 340 QIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPAARMKKVPSAV 395 (622)
Q Consensus 340 ~i~td~IvGfPGETeedf~eTl~fl~el~-~d~v~i~~ysP~PGTpa~~~~~v~~~~ 395 (622)
.+.+..|+|+ |||.+|-.+.+.++.++. ++.+-|+.|.|.||||+.+.+.++..+
T Consensus 194 ~vcsGgI~Gl-GEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e 249 (335)
T COG0502 194 EVCSGGIVGL-GETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFE 249 (335)
T ss_pred ccccceEecC-CCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHH
Confidence 9999999999 999999999999999999 999999999999999999988777643
No 82
>PRK07360 FO synthase subunit 2; Reviewed
Probab=99.56 E-value=8e-14 Score=150.88 Aligned_cols=188 Identities=18% Similarity=0.266 Sum_probs=139.5
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 188 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
.|+++.+|+.+|.||.+....+ .....++|+|++.++.+.+.|+++|.|+|+.-.... + ...+.++++.+.+.++
T Consensus 63 ~i~~Tn~C~~~C~fC~~~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~-~e~~~~~i~~ik~~~~- 139 (371)
T PRK07360 63 NINFTNICEGHCGFCAFRRDEGDHGAFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-S-LEFYLEILEAIKEEFP- 139 (371)
T ss_pred CcccchhhhcCCccCCcccCCCCCCCeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-c-HHHHHHHHHHHHHhCC-
Confidence 4677999999999999865432 222479999999999999999999999986332221 0 1246677888776443
Q ss_pred CCceeEEEeecCC----------cchhHHHHHHHHHHhCCCCceeec-ccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHH
Q 007001 266 DGSTMLRIGMTNP----------PFILEHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLI 333 (622)
Q Consensus 266 ~~~~~iri~~~~p----------~~i~~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr 333 (622)
.+.+....| ....+ +.+..+. .++ +..++ .+-+..++++.+.+..+ .+.+++++.++.++
T Consensus 140 ----~i~i~a~s~~ei~~~~~~~G~~~~--e~l~~Lk-eAG-ld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~ 211 (371)
T PRK07360 140 ----DIHLHAFSPMEVYFAAREDGLSYE--EVLKALK-DAG-LDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAH 211 (371)
T ss_pred ----CcceeeCCHHHHHHHHhhcCCCHH--HHHHHHH-HcC-CCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHH
Confidence 222322211 11111 1233333 445 34444 56777889998888765 69999999999999
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCC----CCccccCC
Q 007001 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP----GTPAARMK 389 (622)
Q Consensus 334 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~P----GTpa~~~~ 389 (622)
+. |+.+.+.+|+|+ |||.+|..+.+.++++++.+..++..|.|.| |||++...
T Consensus 212 ~~--Gl~~~sg~i~G~-gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~ 268 (371)
T PRK07360 212 KL--GLPTTSTMMYGH-VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERG 268 (371)
T ss_pred Hc--CCCceeeEEeeC-CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCcccccc
Confidence 99 999999999998 9999999999999999999999999999865 99998654
No 83
>PRK08444 hypothetical protein; Provisional
Probab=99.55 E-value=1.6e-13 Score=147.25 Aligned_cols=195 Identities=14% Similarity=0.153 Sum_probs=147.9
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 188 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
+|.++.-|..+|.||.+....+ .....++|+|++.++...+.|+++|.+++..-..+.. ..+.++++.|.+.+|
T Consensus 52 ~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~---e~y~e~ir~Ik~~~p- 127 (353)
T PRK08444 52 HINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGY---EWYLEIFKKIKEAYP- 127 (353)
T ss_pred CcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 5677999999999999875433 2234799999999999999999999999864333321 246788888877654
Q ss_pred CCceeEEEeecCCcchh-------HHHHHHHHHHhCCCCceeecc-cCCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhC
Q 007001 266 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLHV-PVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 336 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~I-GlQSgsd~vLk~MnR~~-t~e~~~~~I~~lr~~~ 336 (622)
.+.+....|..+. -..++....++.+++ ..++- |.|..++++.+.+-.++ +.+++.+.++.++++
T Consensus 128 ----~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl-~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~- 201 (353)
T PRK08444 128 ----NLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGV-DSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKK- 201 (353)
T ss_pred ----CceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCc-ccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHc-
Confidence 2334333333221 011233344445553 34444 79999999999998754 668999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeC----CCCccccCCCCCHH
Q 007001 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARMKKVPSA 394 (622)
Q Consensus 337 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~----PGTpa~~~~~v~~~ 394 (622)
|+.+++++|+|+ |||.+|..+.+..+++++.+...+..|.|. +|||+...+..+..
T Consensus 202 -Gi~~~sg~l~G~-gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~ 261 (353)
T PRK08444 202 -GKMSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQ 261 (353)
T ss_pred -CCCccceeEEec-CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHH
Confidence 999999999999 599999999999999999999999999999 99999876655554
No 84
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.54 E-value=1e-12 Score=139.93 Aligned_cols=182 Identities=18% Similarity=0.267 Sum_probs=142.1
Q ss_pred EEEEEeCCCCCCCCCCcccCcc---CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 186 VEILPINVGCLGACTYCKTKHA---RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~---rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
+..|.++.+|+.+|.||..... .++.+..+++++.+.++.+.+.|++.|.|+|++...+ .++.++++.+.+.
T Consensus 18 ~l~i~vT~~Cnl~C~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~li~~i~~~ 92 (331)
T PRK00164 18 YLRISVTDRCNFRCTYCMPEGYLPFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLR-----KDLEDIIAALAAL 92 (331)
T ss_pred eEEEEEcCCcCcCCCCCCCccCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCc-----cCHHHHHHHHHhc
Confidence 4578899999999999986541 2446678999999999999889999999999876654 3578888888653
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 341 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi-~i 341 (622)
. +...+.+. +|...+.+. +..+. ..+ ...|.|+++|.+++..+.++++.+.+++.+.++.+++. |+ .+
T Consensus 93 -~--~~~~i~it-TNG~ll~~~---~~~L~-~ag-l~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~--g~~~v 161 (331)
T PRK00164 93 -P--GIRDLALT-TNGYLLARR---AAALK-DAG-LDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAA--GLTPV 161 (331)
T ss_pred -C--CCceEEEE-cCchhHHHH---HHHHH-HcC-CCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHC--CCCcE
Confidence 2 33456664 565444432 23333 333 57899999999999999999999999999999999998 77 66
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
...+++ +||.+++++.+.+++++++++ .+.+..|+|.++...
T Consensus 162 ~i~~vv-~~g~n~~ei~~l~~~~~~~gv-~v~~ie~~p~~~~~~ 203 (331)
T PRK00164 162 KVNAVL-MKGVNDDEIPDLLEWAKDRGI-QLRFIELMPTGEGNE 203 (331)
T ss_pred EEEEEE-ECCCCHHHHHHHHHHHHhCCC-eEEEEEeeECCCCcc
Confidence 655544 689999999999999999997 578888999876643
No 85
>PRK05926 hypothetical protein; Provisional
Probab=99.53 E-value=2.5e-13 Score=146.58 Aligned_cols=186 Identities=16% Similarity=0.192 Sum_probs=139.9
Q ss_pred EEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC
Q 007001 189 LPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD 266 (622)
Q Consensus 189 I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~ 266 (622)
+..+..|+.+|.||.+....+ .....++|+|+++++.. +.|+++|.|+++.-..+.. ..+.++++.|.+.+|
T Consensus 72 in~Tn~C~~dC~FCaf~~~~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~---e~~~e~i~~Ik~~~p-- 145 (370)
T PRK05926 72 LYPTNFCQFNCTFCSFYAKPGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNL---AYYEELFSKIKQNFP-- 145 (370)
T ss_pred eecCCCCCCCCCccccccCCCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCH---HHHHHHHHHHHHhCC--
Confidence 446999999999999655433 24567899999999998 7899999999754333221 346788888887654
Q ss_pred CceeEEEeecCCcchh------H-HHHHHHHHHhCCCCceeec-ccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCC
Q 007001 267 GSTMLRIGMTNPPFIL------E-HLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVP 337 (622)
Q Consensus 267 ~~~~iri~~~~p~~i~------~-~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~p 337 (622)
.+.+..+.+..+. . ..++..+.++..+ +..++ -|.|+.++++++.+.. +.+.+++++.++.++++
T Consensus 146 ---~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAG-l~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~-- 219 (370)
T PRK05926 146 ---DLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAG-LDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSL-- 219 (370)
T ss_pred ---CeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcC-cCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc--
Confidence 2333322222110 0 1123333444555 45555 4799999999998864 57889999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee----CCCCcccc
Q 007001 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAAR 387 (622)
Q Consensus 338 gi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP----~PGTpa~~ 387 (622)
|+.+.+.+|+| +|||.+|..+.+..+++++.+..+|..|.| -++||+..
T Consensus 220 Gi~~~sgmi~G-~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~ 272 (370)
T PRK05926 220 GIPSNATMLCY-HRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGK 272 (370)
T ss_pred CCcccCceEEe-CCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccc
Confidence 99999998888 599999999999999999999999999999 78888764
No 86
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.51 E-value=9.5e-13 Score=145.59 Aligned_cols=197 Identities=12% Similarity=0.165 Sum_probs=143.4
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCC-CCCCCCcCCCHHHHHHHHHHh
Q 007001 186 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDT-GAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~-~~yg~d~~~~l~eLL~~l~~~ 262 (622)
.+.|.+|..|+++|.||.+....+. ....++|+|+++++.+.+.|++++.|+++.. ..+.. ..+.++++.|.+.
T Consensus 85 fapLyiSN~C~n~C~YCgfs~~n~~i~r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~---eyi~e~i~~I~~~ 161 (469)
T PRK09613 85 FAPLYISNYCVNNCVYCGFRRSNKEIKRKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDI---EYILESIKTIYST 161 (469)
T ss_pred EEeccccCCCCCCCccCCCccCCCCCCceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCH---HHHHHHHHHHHHh
Confidence 3566789999999999998754432 2456999999999999999999999976432 32222 3466777777653
Q ss_pred CCCCC-ceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCCC
Q 007001 263 LPPDG-STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 263 l~~~~-~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR---~~t~e~~~~~I~~lr~~~pg 338 (622)
.+..+ ...+.+. +-| ++. +++..+... + ..++++-.||.+.++++.++. +++.++-++++++++++ |
T Consensus 162 ~~~~g~i~~v~in-ig~--lt~--eey~~Lkea-G-v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~a--G 232 (469)
T PRK09613 162 KHGNGEIRRVNVN-IAP--TTV--ENYKKLKEA-G-IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEA--G 232 (469)
T ss_pred ccccCcceeeEEE-eec--CCH--HHHHHHHHc-C-CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHc--C
Confidence 21111 1234443 223 232 334544433 3 678999999999999999854 57899999999999999 9
Q ss_pred CE-EEEEEEEcCCCCCHHHHHHHHHHHHhc------CCCeEEEEEeeeCCCCccccCC-CCCHHH
Q 007001 339 MQ-IATDIICGFPGETDEDFNQTVNLIKEY------KFPQVHISQFYPRPGTPAARMK-KVPSAV 395 (622)
Q Consensus 339 i~-i~td~IvGfPGETeedf~eTl~fl~el------~~d~v~i~~ysP~PGTpa~~~~-~v~~~~ 395 (622)
+. +.+++|+|++ |+.+|...++..++.+ +++.+.+..|.|.+|||+.+.+ .++++.
T Consensus 233 i~~Vg~G~L~GLg-e~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e 296 (469)
T PRK09613 233 IDDVGIGVLFGLY-DYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDED 296 (469)
T ss_pred CCeeCeEEEEcCC-CCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHH
Confidence 97 9999999985 5666666667777666 5777899999999999997776 577654
No 87
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.49 E-value=3.9e-12 Score=135.62 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=139.1
Q ss_pred EEEEEeCCCCCCCCCCcccCcc--CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 186 VEILPINVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
+..|.++.+||.+|.||..... ..+....+.+++.+-++.+.+.|++.|.|+|+....+ .++.++++.+.+ .
T Consensus 15 ~l~i~iT~~CNl~C~yC~~~~~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr-----~dl~~li~~i~~-~ 88 (329)
T PRK13361 15 YLRLSVTDRCDFRCVYCMSEDPCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVR-----RGCDQLVARLGK-L 88 (329)
T ss_pred eEEEEecCCccccCCCCCCCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCcc-----ccHHHHHHHHHh-C
Confidence 4567899999999999975421 1234567899999988888889999999999776654 357888888865 3
Q ss_pred CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EEE
Q 007001 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QIA 342 (622)
Q Consensus 264 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi-~i~ 342 (622)
+ +...+.+. +|...+.+. +..+. ..+ ..++.|+++|.+++..+.++++.+.+++.+.++.++++ |+ .+.
T Consensus 89 ~--~l~~i~it-TNG~ll~~~---~~~L~-~aG-l~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~--Gi~~v~ 158 (329)
T PRK13361 89 P--GLEELSLT-TNGSRLARF---AAELA-DAG-LKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAA--GFERIK 158 (329)
T ss_pred C--CCceEEEE-eChhHHHHH---HHHHH-HcC-CCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHc--CCCceE
Confidence 2 33356664 666555432 22333 333 67999999999999999999999999999999999999 87 566
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 343 td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
..+++ +||++.+++.+.++|+.+++++ +.+..|+|..+..
T Consensus 159 in~v~-~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g~~~ 198 (329)
T PRK13361 159 LNAVI-LRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLGEID 198 (329)
T ss_pred EEEEE-ECCCCHHHHHHHHHHHHhcCCe-EEEEecccCCCcc
Confidence 65554 6899999999999999999986 5577788886533
No 88
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.46 E-value=8.7e-12 Score=133.02 Aligned_cols=183 Identities=17% Similarity=0.269 Sum_probs=141.8
Q ss_pred EEEEEeCCCCCCCCCCcccCcc----CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHA----RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~----rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
+..|.++.+|+.+|.||..... ..+....+.+++.+.++.+.+.|++.|.|+|++...+ .++.++++.+.+
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~-----~~l~~li~~i~~ 85 (334)
T TIGR02666 11 YLRISVTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLR-----KDLVELVARLAA 85 (334)
T ss_pred eEEEEecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcccccc-----CCHHHHHHHHHh
Confidence 4568899999999999986541 1134567899999999999999999999999876654 357889888765
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCE
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQ 340 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pgi~ 340 (622)
.+ +...+.+. +|...+.+. +..+. ..+ ..++.|+++|.+++..+.+.+ +.+.+++.+.++.++++ |+.
T Consensus 86 -~~--gi~~v~it-TNG~ll~~~---~~~L~-~~g-l~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~--G~~ 154 (334)
T TIGR02666 86 -LP--GIEDIALT-TNGLLLARH---AKDLK-EAG-LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA--GLE 154 (334)
T ss_pred -cC--CCCeEEEE-eCchhHHHH---HHHHH-HcC-CCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc--CCC
Confidence 32 34356665 566555443 33333 333 578999999999999999985 57999999999999999 876
Q ss_pred -EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccc
Q 007001 341 -IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 386 (622)
Q Consensus 341 -i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~ 386 (622)
+...+++ .+|.+++++.+.++++++++++ +.+..|+|..++..+
T Consensus 155 ~v~in~vv-~~g~n~~ei~~l~~~~~~~gv~-~~~ie~mp~~~~~~~ 199 (334)
T TIGR02666 155 PVKLNTVV-MRGVNDDEIVDLAEFAKERGVT-LRFIELMPLGEGNGW 199 (334)
T ss_pred cEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEeccCCCCCccc
Confidence 6666654 4889999999999999999985 788889998877543
No 89
>PRK05927 hypothetical protein; Provisional
Probab=99.46 E-value=1.1e-12 Score=140.88 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=139.7
Q ss_pred EEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 188 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
.|.++.-|+.+|.||.+....+. ....++++|++.++...+.|++++.|+|+.-..++. ..+.++++.|.+.++
T Consensus 48 ~i~~Tn~C~~~C~fCaf~~~~~~~~~y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~---e~~~~~i~~ik~~~p- 123 (350)
T PRK05927 48 NPNYTNICKIDCTFCAFYRKPHSSDAYLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGI---DYLEELVRITVKEFP- 123 (350)
T ss_pred CCccchhhhcCCccCCccCCCCCccccccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCH---HHHHHHHHHHHHHCC-
Confidence 46679999999999998653332 235789999999999999999999998765443322 246788888876654
Q ss_pred CCceeEEEeecCCcchh-------HHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCC
Q 007001 266 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVP 337 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~p 337 (622)
+. .+....|..+. ...++..+.++..++-...+.++|+.++.+.+.+.. +++.+++++.++.+++.
T Consensus 124 -~l---~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~l-- 197 (350)
T PRK05927 124 -SL---HPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRL-- 197 (350)
T ss_pred -CC---cccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHc--
Confidence 22 11111111111 011222333345554333445999999999998877 45789999999999999
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeC----CCCccccC
Q 007001 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR----PGTPAARM 388 (622)
Q Consensus 338 gi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~----PGTpa~~~ 388 (622)
|+.+++.+|+|+ |||.+|..+.+..+++++-+..+|..|.|. +|||+...
T Consensus 198 Gi~~~sg~l~G~-gEt~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~ 251 (350)
T PRK05927 198 GFRSTATMMFGH-VESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRR 251 (350)
T ss_pred CCCcCceeEEee-CCCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccC
Confidence 999999999999 999999999999999999777778888887 78998753
No 90
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.45 E-value=1.2e-11 Score=129.96 Aligned_cols=178 Identities=13% Similarity=0.204 Sum_probs=137.1
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC-cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 186 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
...|.++.+|+.+|.||..+..... .+..+.+++.+.++.+...|++.|.|+|++.+.. .++.++++.+.+ .
T Consensus 11 ~l~i~vT~~CNl~C~yC~~~~~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~-----~~l~~iv~~l~~-~- 83 (302)
T TIGR02668 11 SLRISVTDRCNLSCFYCHMEGEDRSGGNELSPEEIERIVRVASEFGVRKVKITGGEPLLR-----KDLIEIIRRIKD-Y- 83 (302)
T ss_pred eEEEEEcccccCCCCCCCccccCCCccCcCCHHHHHHHHHHHHHcCCCEEEEECcccccc-----cCHHHHHHHHHh-C-
Confidence 4578999999999999976543222 3568899998888888888999999999876654 357888888764 2
Q ss_pred CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-EEE
Q 007001 265 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IAT 343 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~-i~t 343 (622)
+...+.+. +|...+.+. +..+.. .+ +.++.++++|.+++..+.++++.+.+++++.++.++++ |+. +..
T Consensus 84 --g~~~v~i~-TNG~ll~~~---~~~l~~-~g-~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~--G~~~v~i 153 (302)
T TIGR02668 84 --GIKDVSMT-TNGILLEKL---AKKLKE-AG-LDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA--GLTPVKL 153 (302)
T ss_pred --CCceEEEE-cCchHHHHH---HHHHHH-CC-CCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc--CCCcEEE
Confidence 33355554 565444332 233333 33 57899999999999999999988999999999999999 875 655
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCC
Q 007001 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 382 (622)
Q Consensus 344 d~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PG 382 (622)
.+++ +||++.+++.+.++++.+++++ +++..|+|...
T Consensus 154 ~~v~-~~g~n~~ei~~~~~~~~~~g~~-~~~ie~~p~~~ 190 (302)
T TIGR02668 154 NMVV-LKGINDNEIPDMVEFAAEGGAI-LQLIELMPPGE 190 (302)
T ss_pred EEEE-eCCCCHHHHHHHHHHHHhcCCE-EEEEEEeECCC
Confidence 5544 7999999999999999999985 78888888653
No 91
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.43 E-value=1.4e-11 Score=131.01 Aligned_cols=185 Identities=17% Similarity=0.238 Sum_probs=139.9
Q ss_pred CCccEEEEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHH
Q 007001 182 RNKFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNA 258 (622)
Q Consensus 182 ~~~~~a~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~ 258 (622)
+.+..+.+.+++||+.+|.||..+...|. ....+.+++.+-++++.+. |+++|.|+|+|...... ..|.++++.
T Consensus 85 kyp~rvll~vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~---~~L~~ll~~ 161 (321)
T TIGR03822 85 RYPDRVLLKPVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSP---RRLGDIMAR 161 (321)
T ss_pred CCCCEEEEEecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCH---HHHHHHHHH
Confidence 44567889999999999999987654443 2344667777777777654 89999999998876532 357888988
Q ss_pred HHHhCCCCCceeEEEee----cCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHH
Q 007001 259 IVAELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIE 334 (622)
Q Consensus 259 l~~~l~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~ 334 (622)
+.+ ++ ....+|+++ .+|..+++.+ .+.++..+ + .+.+++++.+++-+ .++..++++.+++
T Consensus 162 l~~-i~--~v~~iri~Tr~~v~~p~rit~el---l~~L~~~g-~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~ 225 (321)
T TIGR03822 162 LAA-ID--HVKIVRFHTRVPVADPARVTPAL---IAALKTSG-K-TVYVALHANHAREL--------TAEARAACARLID 225 (321)
T ss_pred HHh-CC--CccEEEEeCCCcccChhhcCHHH---HHHHHHcC-C-cEEEEecCCChhhc--------CHHHHHHHHHHHH
Confidence 876 44 455678875 2566666543 33443333 2 47799999876543 3789999999999
Q ss_pred hCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc
Q 007001 335 LVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387 (622)
Q Consensus 335 ~~pgi~i~t-d~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~ 387 (622)
+ |+.+.. .+++...+++.+++.++++++.++++...+++.+.|.+||..+.
T Consensus 226 ~--Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~ 277 (321)
T TIGR03822 226 A--GIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFR 277 (321)
T ss_pred c--CCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCccccc
Confidence 9 998766 44555569999999999999999999999999999999986553
No 92
>PTZ00413 lipoate synthase; Provisional
Probab=99.42 E-value=1.3e-11 Score=131.17 Aligned_cols=182 Identities=18% Similarity=0.261 Sum_probs=136.7
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhC
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAEL 263 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~~l 263 (622)
.-.|+..+..|+.+|.||.+.... +....+++++++.++...+.|.+.+++++.+-... .|.+ ..+.+.+++|.+..
T Consensus 149 tATfmilG~~CTr~C~FCaqstg~-~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL-~D~ga~~~a~~I~~Ir~~~ 226 (398)
T PTZ00413 149 TATIMVMGDHCTRGCRFCSVKTSR-KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDL-PDGGASHVARCVELIKESN 226 (398)
T ss_pred eeEeeecCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCC-ChhhHHHHHHHHHHHHccC
Confidence 344667799999999999997533 24556899999999999999999988887642111 1111 34666667766532
Q ss_pred CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHh-CCCCEE
Q 007001 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIEL-VPGMQI 341 (622)
Q Consensus 264 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~-~pgi~i 341 (622)
+ .+.+..+-|+...+ .+.+..+. .++ ...++-.+|| +++.+..++. +++.++.+++|+.+++. -+|+.+
T Consensus 227 p-----~~~IevligDf~g~-~e~l~~L~-eAG-~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~t 297 (398)
T PTZ00413 227 P-----ELLLEALVGDFHGD-LKSVEKLA-NSP-LSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLT 297 (398)
T ss_pred C-----CCeEEEcCCccccC-HHHHHHHH-hcC-CCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceE
Confidence 2 34455455543211 12244444 344 6899999999 9999999995 68999999999999998 478999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 378 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ys 378 (622)
.+.+|+| +|||++|+.++++.+++++++.+.|.+|-
T Consensus 298 cSGiIVG-LGET~eEvie~m~dLrelGVDivtIGQYL 333 (398)
T PTZ00413 298 KSSIMLG-LGETEEEVRQTLRDLRTAGVSAVTLGQYL 333 (398)
T ss_pred eeeeEec-CCCCHHHHHHHHHHHHHcCCcEEeecccc
Confidence 9999999 59999999999999999999999997764
No 93
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.41 E-value=8.2e-12 Score=146.74 Aligned_cols=187 Identities=15% Similarity=0.277 Sum_probs=138.2
Q ss_pred EEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 188 ILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
.|.+|.+|+.+|.||.+....+ ..+.+++|+|+++++...+.|+++|.++|..-..+.. ..+.++++.|.+..+
T Consensus 529 ~In~TN~C~~~C~FCafs~~~~~~~~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~---~~y~~lir~IK~~~p- 604 (843)
T PRK09234 529 NINFTNICYTGCRFCAFAQRKTDADAYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELPG---TGYADLVRAVKARVP- 604 (843)
T ss_pred ceecCCCCCCCCcccccccCCCCCCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcCH---HHHHHHHHHHHHhCC-
Confidence 4667999999999999875432 3455799999999999999999999999753222221 346788888877654
Q ss_pred CCceeEEEeecCCcchh-------HHHHHHHHHHhCCCCceeec-ccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhC
Q 007001 266 DGSTMLRIGMTNPPFIL-------EHLKEIAEVLRHPCVYSFLH-VPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELV 336 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i~-------~~l~el~~l~~~~~v~~~l~-IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~ 336 (622)
+...-.+ .|.++. -..++....++..+ +..++ -+-+-.++++.+.+.+ +.+.++++++++.+++.
T Consensus 605 -~i~i~af---sp~Ei~~~a~~~Gl~~~e~l~~LkeAG-Lds~pgt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~l- 678 (843)
T PRK09234 605 -SMHVHAF---SPMEIVNGAARLGLSIREWLTALREAG-LDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEV- 678 (843)
T ss_pred -CeeEEec---ChHHHHHHHHHcCCCHHHHHHHHHHhC-cCccCCCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHc-
Confidence 3333222 221111 01123333344445 34444 4666777777767765 46889999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee----CCCCccc
Q 007001 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP----RPGTPAA 386 (622)
Q Consensus 337 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP----~PGTpa~ 386 (622)
|+.+++++|+|+ +||.+|+.+.+.++++++.+..+|..|.| .|+||++
T Consensus 679 -Gi~~~stmm~G~-~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~ 730 (843)
T PRK09234 679 -GLRSSSTMMYGH-VDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLY 730 (843)
T ss_pred -CCCcccceEEcC-CCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcc
Confidence 999999999997 79999999999999999999999999999 7889885
No 94
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.38 E-value=6.3e-11 Score=128.42 Aligned_cols=191 Identities=18% Similarity=0.262 Sum_probs=140.7
Q ss_pred EEEEEeCCCCCCCCCCcccCccC---CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 186 VEILPINVGCLGACTYCKTKHAR---GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~r---G~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
+..|.++.+|+.+|.||...... ......+.++|.+.++.+.+.|++.|.|+|+....+ .++.++++.+.+
T Consensus 59 ~lrisvT~~CNlrC~yC~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr-----~dl~eli~~l~~- 132 (373)
T PLN02951 59 YLRISLTERCNLRCQYCMPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLR-----KDIEDICLQLSS- 132 (373)
T ss_pred EEEEEEcCCcCcCCCCCCCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcch-----hhHHHHHHHHHh-
Confidence 44678999999999999754211 122457889999999888889999999999766543 357888888765
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-EE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM-QI 341 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi-~i 341 (622)
++ +...+.+. +|...+.+. +.++.. .+ ...+.|.++|.+++..+.+.|+...+++++.|+.++++ |+ .+
T Consensus 133 ~~--gi~~i~it-TNG~lL~~~---~~~L~~-aG-ld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~--G~~~v 202 (373)
T PLN02951 133 LK--GLKTLAMT-TNGITLSRK---LPRLKE-AG-LTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIEL--GYNPV 202 (373)
T ss_pred cC--CCceEEEe-eCcchHHHH---HHHHHh-CC-CCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHc--CCCcE
Confidence 33 44445553 565444443 333433 33 57899999999999999998888889999999999999 76 34
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHH
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~ 394 (622)
...+ +-.+|++++++.+.++++++.++ .+.+..|+|..|++...-..++..
T Consensus 203 kin~-vv~~g~N~~Ei~~li~~a~~~gi-~vr~ie~mP~~~~~~~~~~~~~~~ 253 (373)
T PLN02951 203 KVNC-VVMRGFNDDEICDFVELTRDKPI-NVRFIEFMPFDGNVWNVKKLVPYA 253 (373)
T ss_pred EEEE-EecCCCCHHHHHHHHHHHHhCCC-eEEEEEcccCCCCccccccCCCHH
Confidence 4444 34578899999999999999885 688999999999864322234433
No 95
>PRK09234 fbiC FO synthase; Reviewed
Probab=99.33 E-value=4.2e-11 Score=140.85 Aligned_cols=195 Identities=17% Similarity=0.216 Sum_probs=139.4
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC------------CCc-CCC
Q 007001 187 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG------------RDI-GVN 251 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg------------~d~-~~~ 251 (622)
.+|..+..|..+|.||.+....+ .....++|+|++.++...+.|++++.|++++-.... .+. -..
T Consensus 73 ~~In~Tn~C~~~C~YCaF~~~~~~~~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey 152 (843)
T PRK09234 73 VFIPLTRLCRDRCHYCTFATVPGKLEAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDY 152 (843)
T ss_pred EEecCCCCCCCCCCcCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHH
Confidence 46788999999999999865443 345679999999999999999999999876543311 110 023
Q ss_pred HHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh------cCCCCHHHH
Q 007001 252 LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM------NREYTLSDF 325 (622)
Q Consensus 252 l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M------nR~~t~e~~ 325 (622)
+.++++.+.+..+ -...+.++.+ +. +++..+...+ . .+++.+|+.+++..+.. ..+...++.
T Consensus 153 ~~~~~~~ik~~~g--l~p~i~~G~l-----s~--~E~~~Lk~~g--~-s~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~R 220 (843)
T PRK09234 153 VRAMAIRVLEETG--LLPHLNPGVM-----SW--SELARLKPVA--P-SMGMMLETTSRRLFEEKGGPHYGSPDKDPAVR 220 (843)
T ss_pred HHHHHHHHHHhcC--CCceeeeCCC-----CH--HHHHHHHHhc--C-cCCCCHHHHHHHHHHhhcccccCCCCCCHHHH
Confidence 4455555554322 1123333332 22 2344443322 2 25677888888775432 223357788
Q ss_pred HHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEEeeeCCCCccccCCCCCHHHH
Q 007001 326 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGTPAARMKKVPSAVV 396 (622)
Q Consensus 326 ~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el-----~~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 396 (622)
++.++.+++. |+.+++.+|+|+ |||.+|..+.+..++++ +|..+-+..|.|.||||+...+..+..+.
T Consensus 221 L~ti~~A~~l--Gi~~tsG~L~Gi-GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~ 293 (843)
T PRK09234 221 LRVLEDAGRL--SVPFTTGILIGI-GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEEL 293 (843)
T ss_pred HHHHHHHHHc--CCCccceEEEEC-CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHH
Confidence 9999999999 999999999999 99999999999999999 57889999999999999987766555443
No 96
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.27 E-value=3.5e-10 Score=114.53 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=121.7
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCC---CcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADG---VKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~G---vkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
.++-++.|||++|.||..+.... ..+..+++++++++..+...+ ...|.|+|++.+.+.. .+.++++.+.+
T Consensus 17 ~~~v~~~gCnl~C~~C~~~~~~~~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~----~~~~li~~~~~ 92 (235)
T TIGR02493 17 RFVVFMQGCPLRCQYCHNPDTWDLKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPE----FLSELFKACKE 92 (235)
T ss_pred eEEEEECCCCCcCCCCCChhhccCCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHH----HHHHHHHHHHH
Confidence 45678889999999998654321 235679999999998876542 2579999877765421 23467776654
Q ss_pred hCCCCCceeEEEeecCCcc--hhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 007001 262 ELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi 339 (622)
. +. .+.+. +|... +.+. +.+++.. ...+.+++++.+++..+.+.+. +.+.+.+.++.+++. |+
T Consensus 93 -~---g~-~~~i~-TNG~~~~~~~~---~~~ll~~---~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~--g~ 157 (235)
T TIGR02493 93 -L---GI-HTCLD-TSGFLGGCTEA---ADELLEY---TDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKR--NK 157 (235)
T ss_pred -C---CC-CEEEE-cCCCCCccHHH---HHHHHHh---CCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhC--CC
Confidence 2 32 33443 34321 1333 3333332 3578899999999998877654 788999999999998 87
Q ss_pred EEEEEEEEcCCC--CCHHHHHHHHHHHHhcC-CCeEEEEEeeeC
Q 007001 340 QIATDIICGFPG--ETDEDFNQTVNLIKEYK-FPQVHISQFYPR 380 (622)
Q Consensus 340 ~i~td~IvGfPG--ETeedf~eTl~fl~el~-~d~v~i~~ysP~ 380 (622)
.+...+++ +|| ++.+++++.++|+.+++ ...+++.+|.|.
T Consensus 158 ~~~v~~vv-~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~~~~ 200 (235)
T TIGR02493 158 PIWIRYVL-VPGYTDSEEDIEALAEFVKTLPNVERVEVLPYHQL 200 (235)
T ss_pred cEEEEEee-eCCcCCCHHHHHHHHHHHHhCCCCceEEecCCCcc
Confidence 77666666 375 57899999999999998 567777777764
No 97
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.25 E-value=9.7e-10 Score=118.03 Aligned_cols=182 Identities=20% Similarity=0.294 Sum_probs=128.3
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEee-cCCCCCCCCcCCCHHHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~-~GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
.....|.++.||+.+|.||.... .|..|..++++|++++..+.. .++++|+|+| ++.. .++.++++.+..
T Consensus 102 ~~t~cvSsq~GC~~~C~FC~tg~-~~~~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl-------~n~~~vi~~l~~ 173 (349)
T PRK14463 102 RNTLCISSQVGCAMGCAFCLTGT-FRLTRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPL-------ANLDNVIPALQI 173 (349)
T ss_pred CcEEEEEecCCcCCCCccCCCCC-CCCCCCCCHHHHHHHHHHHHhcCCccEEEEecCCcch-------hcHHHHHHHHHH
Confidence 45679999999999999998654 355788999999999988764 4789999998 3322 134455555433
Q ss_pred hCCCCC----ceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 007001 262 ELPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 334 (622)
Q Consensus 262 ~l~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr~ 334 (622)
.....+ ...++++ ++- +.+ .+.+++... -..+.+.+.|.+++..+.+ +|+++.+++.+++.....
T Consensus 174 l~~~~gl~~s~r~itVs-TnG--l~~---~i~~l~~~~--~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~ 245 (349)
T PRK14463 174 LTDPDGLQFSTRKVTVS-TSG--LVP---EMEELGREV--TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPL 245 (349)
T ss_pred hhcccccCcCCceEEEE-CCC--chH---HHHHHhhcc--CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 110001 2355655 322 222 234444332 2367789999999999886 889999999998887776
Q ss_pred hCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCC
Q 007001 335 LVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383 (622)
Q Consensus 335 ~~p-gi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGT 383 (622)
... .+.+. +++++-..++++++.+..++++.++. .+++-+|.|.+|.
T Consensus 246 ~~~~~v~ie-yvLI~GvNDs~e~~~~L~~ll~~l~~-~vnlIPyn~~~~~ 293 (349)
T PRK14463 246 PGRRKITIE-YVMIRGLNDSLEDAKRLVRLLSDIPS-KVNLIPFNEHEGC 293 (349)
T ss_pred hcCCeEEEE-EEEeCCCCCCHHHHHHHHHHHhccCc-eEEEEecCCCCCC
Confidence 521 23343 45555569999999999999999875 8999999998874
No 98
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.20 E-value=2e-09 Score=115.93 Aligned_cols=188 Identities=18% Similarity=0.247 Sum_probs=129.5
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH------CCCcEEEEee-cCCCCCCCCcCCCHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSS-EDTGAYGRDIGVNLPILL 256 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~------~GvkeI~L~g-~d~~~yg~d~~~~l~eLL 256 (622)
.....|.++.||+.+|.||..+.. |..|..++++|++++..... .|+..|+|+| +....+ . ..+.+++
T Consensus 108 ~~t~ciSsqvGC~~~C~FC~t~~~-~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln-~---~~v~~~l 182 (356)
T PRK14455 108 GNSVCVTTQVGCRIGCTFCASTLG-GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDN-Y---DNVMDFL 182 (356)
T ss_pred CceEEEECCCCCCCCCCcCCCCCC-CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCC-H---HHHHHHH
Confidence 456799999999999999998864 55788999999999986422 3678899988 443322 1 2456666
Q ss_pred HHHHHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHh---hcCCCCHHHHHHHHHHH
Q 007001 257 NAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDTL 332 (622)
Q Consensus 257 ~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~---MnR~~t~e~~~~~I~~l 332 (622)
+.+.+.... .+...+.+++.- +.+. +..+..... -..|.+.+.+.+++..+. ++|+++.+++++.++.+
T Consensus 183 ~~l~~~~g~~~s~r~itvsT~G---~~~~---i~~l~d~~l-~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~ 255 (356)
T PRK14455 183 RIINDDKGLAIGARHITVSTSG---IAPK---IYDFADEGL-QINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYY 255 (356)
T ss_pred HHHhcccCcccCCCceEEEecC---chHh---HHHHHhccc-CeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 666432100 012255555321 1122 333333321 135779999999999875 67889999999999988
Q ss_pred HHhCCCCEEEE-EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 333 IELVPGMQIAT-DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 333 r~~~pgi~i~t-d~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
.+.. +..+.. +++++-..++++++++..+|++.++ ..+++-+|.|.++.++
T Consensus 256 ~~~~-~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~-~~VnLIPynp~~~~ky 307 (356)
T PRK14455 256 IEKT-NRRVTFEYILLGGVNDQVEHAEELADLLKGIK-CHVNLIPVNPVPERDY 307 (356)
T ss_pred HHhc-CCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CcEEEEecCcCCCCCC
Confidence 7641 334443 5555556899999999999999987 5899999999988753
No 99
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.19 E-value=5.1e-09 Score=113.68 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=134.5
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccC-CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 184 KFVEILPINVGCLGACTYCKTKHAR-GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~r-G~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
+....+.++..|+.+|.||...... ...+..+.+++.+-++.+.+.|+..|.|+|++.+.+ .++.++++.+.+.
T Consensus 15 P~~l~i~iT~~CNl~C~~C~~~~~~~~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~il~~~~~~ 89 (378)
T PRK05301 15 PLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTEEWIRVLREARALGALQLHFSGGEPLLR-----KDLEELVAHAREL 89 (378)
T ss_pred CeEEEEEecCccCcCCCCCCCccccccccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCc-----hhHHHHHHHHHHc
Confidence 5677899999999999999765322 234567889888888888888999999998877664 3577888877642
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCCEE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pgi~i 341 (622)
+ ..+.+ .+|...+++.. +..+... + ...+.|++++.++++.+.+++. .+.+.+.+.++.+++. |+.+
T Consensus 90 ----g-~~~~i-~TNG~ll~~~~--~~~L~~~-g-~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~--g~~v 157 (378)
T PRK05301 90 ----G-LYTNL-ITSGVGLTEAR--LAALKDA-G-LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH--GYPL 157 (378)
T ss_pred ----C-CcEEE-ECCCccCCHHH--HHHHHHc-C-CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC--CCce
Confidence 2 23334 36776666543 3334433 3 5689999999999999887665 4899999999999999 8876
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 379 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP 379 (622)
...+ -++.++.+++.+.++++.+++++.+.+..+.+
T Consensus 158 ~i~~--vv~~~N~~~i~~~~~~~~~lgv~~i~~~~~~~ 193 (378)
T PRK05301 158 TLNA--VIHRHNIDQIPRIIELAVELGADRLELANTQY 193 (378)
T ss_pred EEEE--EeecCCHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 5544 44788999999999999999999888776544
No 100
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.19 E-value=4.9e-09 Score=111.91 Aligned_cols=183 Identities=15% Similarity=0.274 Sum_probs=131.0
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEee-cCCCCCCCCcCCCHHHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~-~GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
.....|.++.||+.+|.||..... |..|..++++|++++..+.. .++..|+|+| +... .++.++++.+..
T Consensus 102 r~t~cvSsQvGC~~~C~FC~Tg~~-g~~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL-------~N~d~vi~al~~ 173 (345)
T PRK14466 102 RATLCVSSQVGCKMNCLFCMTGKQ-GFTGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPL-------DNLDEVLKALEI 173 (345)
T ss_pred ceEEEEEcCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCc-------ccHHHHHHHHHH
Confidence 456789999999999999997764 66677899999999998754 3689999988 4333 234556655543
Q ss_pred hCCCCC----ceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhc---CCCCHHHHHHHHHHHHH
Q 007001 262 ELPPDG----STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN---REYTLSDFRTVVDTLIE 334 (622)
Q Consensus 262 ~l~~~~----~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn---R~~t~e~~~~~I~~lr~ 334 (622)
.....+ ...+++++.- +...+ .+++.... ..+.+.+-|.+++..+.+. +.|+.+++.++++...+
T Consensus 174 l~~~~g~~~s~r~ItVsT~G---~~~~i---~~l~~~~~--~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~ 245 (345)
T PRK14466 174 LTAPYGYGWSPKRITVSTVG---LKKGL---KRFLEESE--CHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDF 245 (345)
T ss_pred HhhccccCcCCceEEEEcCC---CchHH---HHHhhccC--cEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 211001 2466666332 22222 22222222 2677889999999987665 56889999999998766
Q ss_pred hCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 335 LVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 335 ~~pg-i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
...+ +.+..-+|=|+ .+++++..+..++++.++ .++++-+|.|.||.+
T Consensus 246 ~~~rri~~Ey~Li~gv-ND~~e~a~~L~~ll~~~~-~~VNLIp~Np~~~~~ 294 (345)
T PRK14466 246 SKQRRVSFEYIVFKGL-NDSLKHAKELVKLLRGID-CRVNLIRFHAIPGVD 294 (345)
T ss_pred hhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHcCCC-ceEEEEecCCCCCCC
Confidence 5333 66666677776 899999999999999887 789999999999963
No 101
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.17 E-value=5e-09 Score=112.86 Aligned_cols=176 Identities=12% Similarity=0.135 Sum_probs=131.1
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCC-CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG-~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
+....+.++..|+.+|.||..+.... .....+.+++.+-++.+.+.|+..|.|+|++.+.+ .++.++++.+.+.
T Consensus 6 P~~l~ieiT~~CNl~C~~C~~~~~~~~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~-----~~~~~ii~~~~~~ 80 (358)
T TIGR02109 6 PLWLLAELTHRCPLQCPYCSNPLELARRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLAR-----PDLVELVAHARRL 80 (358)
T ss_pred CcEEEEeeccccCcCCCCCCCChhcccccCCCCHHHHHHHHHHHHhcCCcEEEEeCcccccc-----ccHHHHHHHHHHc
Confidence 45678999999999999998653211 23456888888888888888999999998877654 3578888887652
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCCEE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pgi~i 341 (622)
+ ..+.+. +|...+++.. +..+... + +..|.|++++.++++..++++. .+.+.+.+.++.++++ |+.+
T Consensus 81 ----g-~~~~l~-TNG~ll~~e~--~~~L~~~-g-~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~--g~~v 148 (358)
T TIGR02109 81 ----G-LYTNLI-TSGVGLTEAR--LDALADA-G-LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA--GLPL 148 (358)
T ss_pred ----C-CeEEEE-eCCccCCHHH--HHHHHhC-C-CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC--CCce
Confidence 2 234443 5665565533 3334433 3 5789999999999999887653 4788999999999998 8876
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 378 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ys 378 (622)
...+ -++.++.+++.+.++++.+++++.+.+....
T Consensus 149 ~v~~--vv~~~N~~~l~~~~~~~~~lg~~~i~~~~~~ 183 (358)
T TIGR02109 149 TLNF--VIHRHNIDQIPEIIELAIELGADRVELATTQ 183 (358)
T ss_pred EEEE--EeccCCHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 5444 4568899999999999999999988876543
No 102
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.15 E-value=7.7e-09 Score=114.46 Aligned_cols=187 Identities=21% Similarity=0.280 Sum_probs=133.3
Q ss_pred ccEEEEEeCCCCCCCCCCcccCcc-----C-C-CcCCCCHHHHHHHHHHHHHC--CCcEEEEee-cCCCCCCCCcCCCHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHA-----R-G-HLGSYTVESLVGRVRTVIAD--GVKEVWLSS-EDTGAYGRDIGVNLP 253 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~-----r-G-~~rsr~~e~Iv~Ei~~L~~~--GvkeI~L~g-~d~~~yg~d~~~~l~ 253 (622)
..+..+.++.||+.+|.||...+. + | ..+..+++++++.++.+.+. +...|.|+| ++...+.. ...
T Consensus 23 ~~r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e----~~~ 98 (442)
T TIGR01290 23 FARMHLAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIG----KTF 98 (442)
T ss_pred cCEEEEecCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCcc----ccH
Confidence 345689999999999999986432 1 2 23557899999999988764 567788888 55555421 245
Q ss_pred HHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh-------cCCCC-----
Q 007001 254 ILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-------NREYT----- 321 (622)
Q Consensus 254 eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M-------nR~~t----- 321 (622)
++++.+.+..+ + ..+.++ +|-..+.+.+ .+++..+ ..+|.+.+-+.++++-+.+ +|.|+
T Consensus 99 ~~l~~~~~~~~--~-i~i~ls-TNG~~l~e~i---~~L~~~g--vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~ 169 (442)
T TIGR01290 99 QTLELVARQLP--D-VKLCLS-TNGLMLPEHV---DRLVDLG--VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAA 169 (442)
T ss_pred HHHHHHHHhcC--C-CeEEEE-CCCCCCHHHH---HHHHHCC--CCeEEEeccCCCHHHHhhcchhhccccccccCcchH
Confidence 67777766543 2 345554 5543333333 3344332 5799999999999998765 33343
Q ss_pred ---HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCC--CCccc
Q 007001 322 ---LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRP--GTPAA 386 (622)
Q Consensus 322 ---~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~P--GTpa~ 386 (622)
.+..++.++.+.+. |+.+...+++ +||.+++++.+..+++++++...+++.+|.|.| |+++.
T Consensus 170 ~il~e~~l~~l~~l~~~--G~~v~v~~vl-IpGiND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~ 236 (442)
T TIGR01290 170 DLLIERQLEGLEKLTER--GILVKVNSVL-IPGINDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYG 236 (442)
T ss_pred HHHHHHHHHHHHHHHhC--CCeEEEEEEe-eCCcCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccC
Confidence 34556888888888 8776655554 478899999999999999999889999999888 98853
No 103
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.15 E-value=6.4e-09 Score=112.33 Aligned_cols=188 Identities=13% Similarity=0.220 Sum_probs=130.5
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHH--------HHCCCcEEEEee-cCCCCCCCCcCCCHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTV--------IADGVKEVWLSS-EDTGAYGRDIGVNLPI 254 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L--------~~~GvkeI~L~g-~d~~~yg~d~~~~l~e 254 (622)
...+.|.++.||+.+|+||..... |..|..+.++|++++..+ ...+++.|+|+| ++...+. .++.+
T Consensus 120 ~~t~ciSsq~GCnl~C~FC~tg~~-g~~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~----d~v~~ 194 (368)
T PRK14456 120 RMTACISSQAGCALRCSFCATGQM-GFRRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNT----DNVFE 194 (368)
T ss_pred ceEEEEEecCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCH----HHHHH
Confidence 456789999999999999987753 566778899999997543 135789999998 4443321 23566
Q ss_pred HHHHHHHh-CCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---c-CCCCHHHHHHH
Q 007001 255 LLNAIVAE-LPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---N-REYTLSDFRTV 328 (622)
Q Consensus 255 LL~~l~~~-l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---n-R~~t~e~~~~~ 328 (622)
+++.+.+. ... -+...+++++ +- +.+. +.++... ++-..|.+.+.|.+++..+.+ + ++|..+++.++
T Consensus 195 ~i~~l~~~~~~~~is~r~ItisT-~G--l~~~---i~~L~~~-gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~ 267 (368)
T PRK14456 195 AVLTLSTRKYRFSISQRKITIST-VG--ITPE---IDRLATS-GLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREA 267 (368)
T ss_pred HHHHHhccccccCcCcCeeEEEC-CC--ChHH---HHHHHHc-CCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHH
Confidence 66666432 100 0123566653 32 3333 3444433 322479999999999999766 3 58999999999
Q ss_pred HHH-HHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 329 VDT-LIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 329 I~~-lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
++. +++.-..+.+..-+|-|+ .++++++.+.++|++.+. ..+++-+|.|.++.+.
T Consensus 268 i~~~~~~~g~~V~ieyvLI~Gv-NDs~eda~~L~~~l~~~~-~~VnlIpyn~~~~~~~ 323 (368)
T PRK14456 268 LIGYASKTGEPVTLVYMLLEGI-NDSPEDARKLIRFASRFF-CKINLIDYNSIVNIKF 323 (368)
T ss_pred HHHHHHhcCCeEEEEEEEEcCC-CCCHHHHHHHHHHHhcCC-CeeEEeeeccCCCCCC
Confidence 985 444411245556666665 789999999999999985 4789999999988874
No 104
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.15 E-value=3.2e-08 Score=102.40 Aligned_cols=268 Identities=16% Similarity=0.217 Sum_probs=169.5
Q ss_pred EEEeCCCCCCCCCCcccCc---cCCC--cCCCCHHHHHHHHHHHHHC--CCcEEEEeec-CCCCCCCCcCCCHHHHHHHH
Q 007001 188 ILPINVGCLGACTYCKTKH---ARGH--LGSYTVESLVGRVRTVIAD--GVKEVWLSSE-DTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~---~rG~--~rsr~~e~Iv~Ei~~L~~~--GvkeI~L~g~-d~~~yg~d~~~~l~eLL~~l 259 (622)
-|.-+.||+.+|-||++.. .|-+ -....+|.+++.++..++. +--|..|-|+ +.+.| ..+.+|++++
T Consensus 110 qVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lY-----P~l~~lVqal 184 (414)
T COG2100 110 QVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLY-----PHLVDLVQAL 184 (414)
T ss_pred EecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccc-----hhHHHHHHHH
Confidence 3445899999999999853 1111 1223589999999888774 3346777665 33334 4688999998
Q ss_pred HHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh-cC-CCCHHHHHHHHHHHHHhCC
Q 007001 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NR-EYTLSDFRTVVDTLIELVP 337 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M-nR-~~t~e~~~~~I~~lr~~~p 337 (622)
.+ ++ +...+.+. +|-..+++.+ +.++. .++ ..++.+++.|.+++.-|.| ++ -|+.+.+++..+.+.++
T Consensus 185 k~-~~--~v~vVSmQ-Tng~~L~~~l--v~eLe-eAG-LdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a-- 254 (414)
T COG2100 185 KE-HK--GVEVVSMQ-TNGVLLSKKL--VDELE-EAG-LDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA-- 254 (414)
T ss_pred hc-CC--CceEEEEe-eCceeccHHH--HHHHH-HhC-CceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC--
Confidence 76 55 66666665 5655566544 33443 344 6899999999999998766 44 48999999999999998
Q ss_pred CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC----CeEEEEEeeeCCCC-ccccCCCCCHHHHHHHHHHHHHHHH----
Q 007001 338 GMQIATDIICGFPGETDEDFNQTVNLIKEYKF----PQVHISQFYPRPGT-PAARMKKVPSAVVKKRSRELTSVFE---- 408 (622)
Q Consensus 338 gi~i~td~IvGfPGETeedf~eTl~fl~el~~----d~v~i~~ysP~PGT-pa~~~~~v~~~~~k~R~~~L~~l~~---- 408 (622)
+|.+-..=.+ +||=+++++...++|+.+++. .-+.+..|.|+.-- ......-.|-.+-.+++++|..--.
T Consensus 255 ~idvlIaPv~-lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg~kpL 333 (414)
T COG2100 255 GIDVLIAPVW-LPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETGVKPL 333 (414)
T ss_pred CCCEEEeeee-cCCcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhCCCcc
Confidence 7754333222 578899999999999999963 45667777765322 1111223444444444333332111
Q ss_pred -----Hhhhh-------ccCCCcEEEE--EEEEEecCCceEEEeecCCeEEEECCCC---CCCCCEEEEEEEEEeeceEE
Q 007001 409 -----AFTPY-------LGMEGRVERI--WITEIAADGIHLVGHTKGYVQVLVPSTG---NMLGTSALVKITSVGRWSVF 471 (622)
Q Consensus 409 -----~~~~~-------~~~vG~~~~V--lve~~~~~~~~~~Grt~~y~~V~v~~~~---~~~G~~v~V~I~~~~~~~l~ 471 (622)
.+... .-..|.+.++ ..++.-++ ..+|... ...|.+.... ..+|+.|+|+|+.....-.+
T Consensus 334 ilkP~~fG~~pRp~lp~PF~rGevv~aevV~~Gr~kG--EmlavAr-dRvIav~~~~~~~~~vG~~vkvrIvr~khnI~I 410 (414)
T COG2100 334 ILKPGEFGMHPRPRLPKPFKRGEVVKAEVVLPGRLKG--EMLAVAR-DRVIAVINSNEGALLVGDRVKVRIVRTKHNIYI 410 (414)
T ss_pred ccChhhcCCCcCCCCCCccccCcEEEEEEEecceecc--eEEEEec-ccEEEEecCchhhhccCceEEEEEEEccCceEE
Confidence 01111 1235766644 33443232 3445554 3344443322 47899999999998888777
Q ss_pred EEE
Q 007001 472 GEV 474 (622)
Q Consensus 472 G~~ 474 (622)
|.+
T Consensus 411 a~p 413 (414)
T COG2100 411 AVP 413 (414)
T ss_pred eee
Confidence 765
No 105
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=99.12 E-value=1.8e-09 Score=116.41 Aligned_cols=194 Identities=18% Similarity=0.277 Sum_probs=135.5
Q ss_pred EEEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 187 EILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
.+|..+.=|.++|+||.+....+ .-...++|+|.++++.+.+.|++|+.|+|+.-..++.+ .+.++++.+.+..|
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~---y~~~~~~~ik~~~p 137 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE---YYEELFRTIKEEFP 137 (370)
T ss_pred ecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH---HHHHHHHHHHHhCc
Confidence 45678899999999999876543 23467999999999999999999999998765555433 45778888877655
Q ss_pred CCCceeEEEeecCCcchh----HHHHH-HHHHHhCCCCceeecccCCCCCHHHHHhhc-CCCCHHHHHHHHHHHHHhCCC
Q 007001 265 PDGSTMLRIGMTNPPFIL----EHLKE-IAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-REYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~----~~l~e-l~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn-R~~t~e~~~~~I~~lr~~~pg 338 (622)
......++...-..+. -..+| +..+. .+++-...-.|-+=.++++.+.+. .+.+.+.+++.++.+++. |
T Consensus 138 --~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk-~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~l--G 212 (370)
T COG1060 138 --DLHIHALSAGEILFLAREGGLSYEEVLKRLK-EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRL--G 212 (370)
T ss_pred --chhhcccCHHHhHHHHhccCCCHHHHHHHHH-HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHc--C
Confidence 3333222211100000 01123 44443 444333334445556777766664 457999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCeEEEEEeeeCCCC-ccccCC
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEY-----KFPQVHISQFYPRPGT-PAARMK 389 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el-----~~d~v~i~~ysP~PGT-pa~~~~ 389 (622)
|..++.+++|+ +||.+|..+++..++++ +|..+.+-.|.|.+++ ++...+
T Consensus 213 I~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~ 268 (370)
T COG1060 213 IPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVP 268 (370)
T ss_pred CCccceeEEEe-cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCC
Confidence 99999999998 99999999999999988 3555555667777777 444443
No 106
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.11 E-value=4.1e-09 Score=112.62 Aligned_cols=188 Identities=16% Similarity=0.211 Sum_probs=130.3
Q ss_pred CCccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 182 RNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 182 ~~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
+.+.++.+.++.||+.+|.||..+...+.....+.+++.+.++.+.+ .|+++|.|+|+|...... ..|.++++.+.
T Consensus 110 ky~~rvll~~T~gCn~~C~yC~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d---~~L~~ll~~L~ 186 (331)
T TIGR00238 110 RYVNRALFLVKGGCAVNCRYCFRRHFPYKENPGNKKKWQKALDYIAEHPEIIEILISGGDPLMAKD---HELEWLLKRLE 186 (331)
T ss_pred ecCCcEEEEeCCCCCCCCcCCCCCCcCCCCCCccHHHHHHHHHHHHhCCCcCEEEEECCccccCCH---HHHHHHHHHHH
Confidence 34556789999999999999987554333233336777777777655 489999999988766532 23788888887
Q ss_pred HhCCCCCceeEEEeecC----CcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 007001 261 AELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336 (622)
Q Consensus 261 ~~l~~~~~~~iri~~~~----p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 336 (622)
+ ++ ....+|+++.. |..+++. +.++++..+ +..+.+..-...+++ .++..++++.++++
T Consensus 187 ~-i~--~~~~IRi~tr~~~~~P~rit~e---l~~~L~~~~-~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~a- 249 (331)
T TIGR00238 187 E-IP--HLVRLRIGTRLPVVIPQRITDE---LCELLASFE-LQLMLVTHINHCNEI---------TEEFAEAMKKLRTV- 249 (331)
T ss_pred h-cC--CccEEEeecCCCccCchhcCHH---HHHHHHhcC-CcEEEEccCCChHhC---------CHHHHHHHHHHHHc-
Confidence 5 44 56788887643 4445654 344444433 344444433333321 26789999999999
Q ss_pred CCCE--EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHH
Q 007001 337 PGMQ--IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394 (622)
Q Consensus 337 pgi~--i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~ 394 (622)
|+. +.+-++-|. .++.+++.+..+.+.++++...+++.+.|..|+.-+ .+|.+
T Consensus 250 -Gi~v~~qtvLl~gv-nD~~~~l~~L~~~l~~~gV~pyyl~~~~~~~g~~~f---~~~~~ 304 (331)
T TIGR00238 250 -NVTLLNQSVLLRGV-NDRAQILAKLSIALFKVGIIPYYLHYLDKVQGAKHF---LVPDA 304 (331)
T ss_pred -CCEEEeecceECCc-CCCHHHHHHHHHHHhhcCeecCeecCcCCCCCcccc---cCCHH
Confidence 865 445566665 678889999999999999998999999999998433 45544
No 107
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.10 E-value=5.2e-09 Score=106.17 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=144.0
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHh
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAE 262 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~~ 262 (622)
..-.|+..+.-|..+|.||.+.. |+....++++-.+-++.....|.+.+++++.|--.. .|-+ ..|.+.+++|.+.
T Consensus 69 ~tATFmImG~~CTR~C~FC~V~~--g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL-~DGGA~hfa~~i~~Ire~ 145 (306)
T COG0320 69 GTATFMILGDICTRRCRFCDVKT--GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDL-PDGGAQHFAECIRAIREL 145 (306)
T ss_pred CceEEeeccchhccCCCccccCC--CCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccc-cccchHHHHHHHHHHHhh
Confidence 44457778999999999999876 555556666666666666678999999998542211 1111 4689999999875
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhC-CCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i 341 (622)
.| .+.+..+-|++-- ....+..++.. +.++ .-.+|+. ++.....+++.+.+.-+++++.+++..|.+..
T Consensus 146 ~P-----~t~iEvL~PDF~G-~~~al~~v~~~~pdV~---nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~T 215 (306)
T COG0320 146 NP-----QTTIEVLTPDFRG-NDDALEIVADAGPDVF---NHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDIPT 215 (306)
T ss_pred CC-----CceEEEeCccccC-CHHHHHHHHhcCcchh---hcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCccc
Confidence 54 4456656676432 22233333332 3333 3356654 34557778899999999999999999999999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHHHh
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEAF 410 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R~~~L~~l~~~~ 410 (622)
.+.+|+|+ |||.+++.++++-+++.+.|.+.+.+|.- | | -+.-.|..-+.-+-++.+.+...++
T Consensus 216 KSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S--~~HlpV~ryv~PeeF~~~~~~a~~~ 279 (306)
T COG0320 216 KSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-S--RKHLPVQRYVTPEEFDELEEVAEEM 279 (306)
T ss_pred ccceeeec-CCcHHHHHHHHHHHHHcCCCEEEeccccC-C-c--cccCCceeccCHHHHHHHHHHHHHc
Confidence 99999999 99999999999999999999999999852 2 1 1111222222233455566666543
No 108
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.10 E-value=1.2e-08 Score=107.49 Aligned_cols=193 Identities=17% Similarity=0.230 Sum_probs=142.9
Q ss_pred EEEEeCCCCCCCCCCcccCc--cCCC-cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 187 EILPINVGCLGACTYCKTKH--ARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~--~rG~-~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
--|.++.-|+++|.||.... ...+ ....++|+|..-++..++.|++.|.|+|+.... ..+|.++++.+.+.
T Consensus 13 LRiSvTdrCNfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPll-----R~dl~eIi~~l~~~- 86 (322)
T COG2896 13 LRISVTDRCNFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLL-----RKDLDEIIARLARL- 86 (322)
T ss_pred EEEEEecCcCCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchh-----hcCHHHHHHHHhhc-
Confidence 35788999999999997543 1111 124579999999999999999999999965433 24688888888753
Q ss_pred CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE-EE
Q 007001 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ-IA 342 (622)
Q Consensus 264 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~-i~ 342 (622)
+...++++ +|-..+.. .++-++.++ +.+|++.+.|.+++.++.+.+....+++++-|+.+.++ |+. +.
T Consensus 87 ---~~~~islT-TNG~~L~~----~a~~Lk~AG-l~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~--Gl~pVK 155 (322)
T COG2896 87 ---GIRDLSLT-TNGVLLAR----RAADLKEAG-LDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEA--GLTPVK 155 (322)
T ss_pred ---ccceEEEe-cchhhHHH----HHHHHHHcC-CcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHc--CCCceE
Confidence 34566664 56543333 333334444 79999999999999999998887799999999999999 875 55
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHH
Q 007001 343 TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKK 398 (622)
Q Consensus 343 td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~ 398 (622)
.+..+ ++|-+++++.+.++|++..++ .+.+--|+|.-....+.+. -++.....+
T Consensus 156 lN~Vv-~kgvNd~ei~~l~e~~~~~~~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~ 210 (322)
T COG2896 156 LNTVL-MKGVNDDEIEDLLEFAKERGA-QLRFIELMPLGEGNSWRLDKYLSLDEILR 210 (322)
T ss_pred EEEEE-ecCCCHHHHHHHHHHHhhcCC-ceEEEEEeecCcccchhhhccccHHHHHH
Confidence 55555 466799999999999999997 6888889988764444444 355444333
No 109
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.09 E-value=1.3e-08 Score=99.79 Aligned_cols=164 Identities=20% Similarity=0.312 Sum_probs=114.6
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCC--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARG--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
...+++.+++|||++|.||..+.... ....+++++++++++.. ...++.|.|+|++...+. ++.++++.+.+
T Consensus 15 g~~~~~~~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~~~i~~sGGEPll~~-----~l~~li~~~~~ 88 (191)
T TIGR02495 15 GKLAFTIFFQGCNLKCPYCHNPELIDREGSGEIEVEFLLEFLRSR-QGLIDGVVITGGEPTLQA-----GLPDFLRKVRE 88 (191)
T ss_pred CCeEEEEEcCCCCCCCCCCCCccccCCCCCCcCCHHHHHHHHHHh-cCCCCeEEEECCcccCcH-----hHHHHHHHHHH
Confidence 34467889999999999998874322 23568999999999875 234678999988776542 37888888865
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHH-HHHHHHHHHHHhCCCC-
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLS-DFRTVVDTLIELVPGM- 339 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e-~~~~~I~~lr~~~pgi- 339 (622)
. + ..+.+. ++.. .. +.+.+++.. +...++.+++++.++...+.++++...+ ++.+.++.+++. |+
T Consensus 89 -~---g-~~v~i~-TNg~--~~--~~l~~l~~~-g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~--gi~ 155 (191)
T TIGR02495 89 -L---G-FEVKLD-TNGS--NP--RVLEELLEE-GLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRS--GIP 155 (191)
T ss_pred -C---C-CeEEEE-eCCC--CH--HHHHHHHhc-CCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHc--CCC
Confidence 2 3 345544 3432 22 224444443 3347899999987666677777765554 899999999998 65
Q ss_pred -EEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 340 -QIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 340 -~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
.+.+.++-|+.. ++++++.++++.+.+
T Consensus 156 ~~i~~~v~~~~~~--~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 156 FELRTTVHRGFLD--EEDLAEIATRIKENG 183 (191)
T ss_pred EEEEEEEeCCCCC--HHHHHHHHHHhccCC
Confidence 455555556543 678999999999887
No 110
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.08 E-value=1.7e-08 Score=108.34 Aligned_cols=191 Identities=15% Similarity=0.239 Sum_probs=129.2
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH---CCCcEEEEee-cCCCCCCCCcCCCHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSS-EDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~---~GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~l 259 (622)
.....|..+-||+.+|.||..+.. |..|..++++|++++..+.+ .++..|+|.| +..... . ..+.+.++.+
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~-g~~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln-~---~~v~~~i~~l 174 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKG-GLKRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLN-I---DEVLAAIRCL 174 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCC-CCccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccC-H---HHHHHHHHHH
Confidence 466899999999999999987653 55677899999999987654 3578899998 333321 0 1234444444
Q ss_pred HHhCCCCCceeEEEeecCCcchhHHHHHHHHHHh--CCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHH-HH
Q 007001 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR--HPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT-LI 333 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~--~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~-lr 333 (622)
.+.+. -+...+++++.- +.+.++++....- .++.-..+.+.+-+.+++..+.+ +++|..+++.+++.. +.
T Consensus 175 ~~~~~-i~~r~itvST~G---~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~ 250 (345)
T PRK14457 175 NQDLG-IGQRRITVSTVG---VPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVA 250 (345)
T ss_pred hcccC-CccCceEEECCC---chhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 32111 022467776542 1222223332110 00111257789999999999777 466888888877765 44
Q ss_pred HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 334 ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 334 ~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
+.-..+.+..-+|=|+ .++++++++..+|++.++. ++++-+|.|.++.++
T Consensus 251 ~~gr~I~iey~LIpGv-NDs~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~ 300 (345)
T PRK14457 251 ITGRRVSFEYILLGGV-NDLPEHAEELANLLRGFQS-HVNLIPYNPIDEVEF 300 (345)
T ss_pred HhCCEEEEEEEEECCc-CCCHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCC
Confidence 4422377888888887 8999999999999999975 899999999888654
No 111
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.06 E-value=1.1e-08 Score=104.57 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=118.8
Q ss_pred EEEEEeCCCCCCCCCCcccCccC--CCcCCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~r--G~~rsr~~e~Iv~Ei~~L~~---~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
...+....|||++|.||..+... ...+..++++|+++++.... .....|.|+|++.+.+. ..+.++++.+.
T Consensus 21 ~~~~~f~~gCnl~C~~C~~~~~~~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~~----~~~~~l~~~~k 96 (246)
T PRK11145 21 IRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQA----EFVRDWFRACK 96 (246)
T ss_pred eEEEEEECCCCCcCCCCCCHHHCCCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcCH----HHHHHHHHHHH
Confidence 45677899999999999866432 22356799999999887643 23356889887665431 11346677765
Q ss_pred HhCCCCCceeEEEeecCCcc--hhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 261 AELPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 261 ~~l~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
+. +. .+.+. ++-.. +.+. +.+++.. +..+.+++.+.+++..+.+.+ .+.+..++.++.+++. |
T Consensus 97 ~~----g~-~i~l~-TNG~~~~~~~~---~~~ll~~---~d~v~islk~~~~e~~~~~~g-~~~~~~l~~i~~l~~~--g 161 (246)
T PRK11145 97 KE----GI-HTCLD-TNGFVRRYDPV---IDELLDV---TDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFARYLAKR--N 161 (246)
T ss_pred Hc----CC-CEEEE-CCCCCCcchHH---HHHHHHh---CCEEEECCCcCChhhcccccC-CChHHHHHHHHHHHhC--C
Confidence 42 22 34443 23221 1232 3333321 457889999999998877754 3557788888888888 6
Q ss_pred CEE--EEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeeCCCCc
Q 007001 339 MQI--ATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTP 384 (622)
Q Consensus 339 i~i--~td~IvGfPGETeedf~eTl~fl~el~-~d~v~i~~ysP~PGTp 384 (622)
+.+ .+-+|-|+ .++++++++..+|+++++ +..+++.+|.|.++.+
T Consensus 162 ~~v~i~~~li~g~-nd~~~ei~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 209 (246)
T PRK11145 162 QKTWIRYVVVPGW-TDDDDSAHRLGEFIKDMGNIEKIELLPYHELGKHK 209 (246)
T ss_pred CcEEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcceEEEecCCccchhH
Confidence 544 44444444 456679999999999985 5788889998887654
No 112
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.05 E-value=4.5e-08 Score=104.66 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=129.3
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHC---CCcEEEEee-cCCCCCCCCcCCCHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSS-EDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~---GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~l 259 (622)
+....|..+.||+.+|.||..... |-.|..++++|++++..+.+. .++.|+|+| +..... . ..+.++++.+
T Consensus 96 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN-~---d~v~~~i~~l 170 (336)
T PRK14470 96 HHVVCLSSQAGCALGCAFCATGKL-GLDRSLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLN-Y---DEVLRAAYAL 170 (336)
T ss_pred CCEEEEeCCCCcCCCCccccCCCC-CCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccC-H---HHHHHHHHHH
Confidence 457899999999999999998753 455777999999999876542 578999998 333221 0 1244555444
Q ss_pred HHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHh
Q 007001 260 VAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 260 ~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr~~ 335 (622)
...... ....++.+++.-. ... +.+++..+. -..|.+.+.+.+++..+.+ +++++.+++++.++.+.+.
T Consensus 171 ~~~~~~~~~~~~ItVsTnG~---~p~---i~~l~~~~~-~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~ 243 (336)
T PRK14470 171 CDPAGARIDGRRISISTAGV---VPM---IRRYTAEGH-KFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAAL 243 (336)
T ss_pred hCccccccCCCceEEEecCC---hHH---HHHHHhcCC-CceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHh
Confidence 321000 0234666663322 122 333443332 2469999999999999877 4568999999999999887
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCC
Q 007001 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 382 (622)
Q Consensus 336 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PG 382 (622)
-..+.+..-+|-|+ .++++|+++..++++.+.. ++++-+|.|.+|
T Consensus 244 ~rri~ieyvLI~Gv-NDseeda~~La~llk~l~~-~vnlI~~N~~~~ 288 (336)
T PRK14470 244 RGRVTLEYVMISGV-NVGEEDAAALGRLLAGIPV-RLNPIAVNDATG 288 (336)
T ss_pred CCCeEEEEEEEecc-cCCHHHHHHHHHHHhcCCC-eEEEeccCCCCC
Confidence 33366777777787 6889999999999998754 788889998655
No 113
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.03 E-value=3.4e-08 Score=105.02 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=126.8
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
+....++++.+|+.+|.||........ .+..+++++++.++ +.|+..|.|+|++...+ .++.++++.+.+
T Consensus 27 Pl~l~le~T~~CNL~C~~C~~~~~~~~~~~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~-----pdl~eiv~~~~~ 98 (318)
T TIGR03470 27 PLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAVD---ECGAPVVSIPGGEPLLH-----PEIDEIVRGLVA 98 (318)
T ss_pred CCEEEEecccccCcCCcCCCCCcCCCcccccCCCHHHHHHHHH---HcCCCEEEEeCcccccc-----ccHHHHHHHHHH
Confidence 456789999999999999976432211 23468888877665 35889999999877765 357888888765
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHh-hcCCCCHHHHHHHHHHHHHhCCCCE
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-MNREYTLSDFRTVVDTLIELVPGMQ 340 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~-MnR~~t~e~~~~~I~~lr~~~pgi~ 340 (622)
. + ..+.+. +|...+.+. +.++...+ ...+.+.+.+.. +.-.. .+++.+.+...+.|+.++++ |+.
T Consensus 99 ~----g-~~v~l~-TNG~ll~~~---~~~l~~~~--~~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~--G~~ 164 (318)
T TIGR03470 99 R----K-KFVYLC-TNALLLEKK---LDKFEPSP--YLTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKAR--GFR 164 (318)
T ss_pred c----C-CeEEEe-cCceehHHH---HHHHHhCC--CcEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHC--CCc
Confidence 2 2 234443 676655543 33444333 346788887754 44433 35567899999999999999 887
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
+...+.+ +++++.+++.+.++++.+++++.+.+.+..|+..++
T Consensus 165 v~v~~tv-~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~ 207 (318)
T TIGR03470 165 VTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAP 207 (318)
T ss_pred EEEEEEE-eCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccc
Confidence 7665544 478999999999999999999999988777765444
No 114
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.02 E-value=4.2e-08 Score=105.29 Aligned_cols=191 Identities=18% Similarity=0.274 Sum_probs=126.0
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH----CCCcEEEEee-cCCCCCCCCcCCCHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----DGVKEVWLSS-EDTGAYGRDIGVNLPILLNA 258 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~----~GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~ 258 (622)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|.| +..... . ..+.++++.
T Consensus 98 ~~t~cvSsq~GC~l~C~FC~t~~-~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N-~---d~v~~~l~~ 172 (348)
T PRK14467 98 HLTLCVSSQVGCAVGCKFCATAK-DGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLAN-Y---ENVRKAVQI 172 (348)
T ss_pred CcEEEEEcCCCCCCcCcCCCCCC-CCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcC-H---HHHHHHHHH
Confidence 45689999999999999999874 366688999999999876654 3578999998 332221 1 234445554
Q ss_pred HHHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH
Q 007001 259 IVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE 334 (622)
Q Consensus 259 l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr~ 334 (622)
+.+.... -+...+++++.- +...++++....-.+. + .+.+.+-+.+++..+.+ ++.++.+++.++++....
T Consensus 173 l~~~~gl~~~~r~itvsT~G---~~~~i~~l~~~~~l~~-v-~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~ 247 (348)
T PRK14467 173 MTSPWGLDLSKRRITISTSG---IIHQIKRMAEDPVMPE-V-NLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPL 247 (348)
T ss_pred HcChhccCcCCCcEEEECCC---ChhHHHHHHhhccccC-e-eEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHH
Confidence 4321000 011367776432 1122222221100122 2 46689999999998665 345788888888876553
Q ss_pred -hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeeeCCCCcc
Q 007001 335 -LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYPRPGTPA 385 (622)
Q Consensus 335 -~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~-~d~v~i~~ysP~PGTpa 385 (622)
.-..+.+..-+|=|+ .++++++++..+|++.++ ..++++-+|.|+|+.++
T Consensus 248 ~~g~~V~ieyvLIpGv-NDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 248 PPGRRIMLEYVLIKGV-NDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred hcCCeEEEEEEEECCc-cCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCC
Confidence 322466666666666 788999999999999985 56899999999888754
No 115
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.01 E-value=8.2e-08 Score=103.46 Aligned_cols=187 Identities=16% Similarity=0.266 Sum_probs=124.2
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHH---HHH-C--C---CcEEEEee-cCCCCCCCCcCCCHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRT---VIA-D--G---VKEVWLSS-EDTGAYGRDIGVNLP 253 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~---L~~-~--G---vkeI~L~g-~d~~~yg~d~~~~l~ 253 (622)
.....|..+.||+.+|.||..+.. |..|..++++|++++.. ... . | ++.|+|+| +..... . ..+.
T Consensus 101 r~t~CvSsq~GC~~~C~FC~tg~~-g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln-~---~~v~ 175 (354)
T PRK14460 101 RYTQCLSCQVGCAMGCTFCSTGTM-GFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLN-L---DEVM 175 (354)
T ss_pred ceeEEeeCCCCcCCCCccCCCCCC-CCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCC-H---HHHH
Confidence 455689999999999999987643 55678899999999943 332 2 3 67889988 333321 0 1234
Q ss_pred HHHHHHHHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC---CCCHHHHHHHH
Q 007001 254 ILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVV 329 (622)
Q Consensus 254 eLL~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR---~~t~e~~~~~I 329 (622)
+.++.+.+.... -+...+.+++ +- +.+. +..+... + ...+.|.+.|.+++..+.+.+ .++.+++.+++
T Consensus 176 ~~l~~l~~~~Gl~~~~r~itvsT-~G--~~~~---i~~L~~~-~-l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al 247 (354)
T PRK14460 176 RSLRTLNNEKGLNFSPRRITVST-CG--IEKG---LRELGES-G-LAFLAVSLHAPNQELRERIMPKAARWPLDDLIAAL 247 (354)
T ss_pred HHHHHHhhhhccCCCCCeEEEEC-CC--ChHH---HHHHHhC-C-CcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHH
Confidence 444444321100 0113566653 22 1222 3333333 3 358899999999999977744 47888888877
Q ss_pred HHHHH-hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 330 DTLIE-LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 330 ~~lr~-~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
..... .-..+.+..-+|=| ..++++|+++..+|++.++. .+++-+|.|.+|.++
T Consensus 248 ~~~~~~~~~~v~iey~LI~G-vNDs~ed~~~l~~~l~~~~~-~VnLIpyn~~~g~~y 302 (354)
T PRK14460 248 KSYPLKTRERVTFEYLLLGG-VNDSLEHARELVRLLSRTKC-KLNLIVYNPAEGLPY 302 (354)
T ss_pred HHHHHhcCCeEEEEEEEECC-CCCCHHHHHHHHHHHhcCCC-cEEEEcCCCCCCCCC
Confidence 75443 31235555555555 58999999999999999975 799999999999874
No 116
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.01 E-value=5.3e-08 Score=105.16 Aligned_cols=188 Identities=15% Similarity=0.246 Sum_probs=126.9
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH---C------C--CcEEEEee-cCCCC-CCCCcCC
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---D------G--VKEVWLSS-EDTGA-YGRDIGV 250 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~---~------G--vkeI~L~g-~d~~~-yg~d~~~ 250 (622)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.+ . | +++|+|.| ++... | .
T Consensus 120 ~~tlCvSsQvGC~m~C~FCatg~-~g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLlN~-----d 193 (373)
T PRK14459 120 RATLCISSQAGCGMACPFCATGQ-GGLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLANY-----K 193 (373)
T ss_pred CceEEEEecCCCCCcCCCCCCCC-CCCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchhhH-----H
Confidence 45678999999999999999764 366788999999999987653 1 2 67899987 33322 2 2
Q ss_pred CHHHHHHHHHHhCCC-CCc--eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHH
Q 007001 251 NLPILLNAIVAELPP-DGS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSD 324 (622)
Q Consensus 251 ~l~eLL~~l~~~l~~-~~~--~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~ 324 (622)
.+.+.++.+.+..+. .+. ..+++++.- +... +.+++... +-..|.+.+-|.+++..+.+ ||.|+.++
T Consensus 194 ~V~~~i~~l~~~~~~g~gis~r~ITvST~G---l~~~---i~~la~~~-l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ 266 (373)
T PRK14459 194 RVVAAVRRITAPAPEGLGISARNVTVSTVG---LVPA---IRKLADEG-LPVTLAVSLHAPDDELRDELVPVNTRWKVDE 266 (373)
T ss_pred HHHHHHHHHhCcccccCCccCCEEEEECcC---chhH---HHHHHHhc-CCeEEEEEeCCCCHHHHHHhcCcccCCCHHH
Confidence 344555544331000 022 356665431 2222 22333322 11258899999999998554 46799999
Q ss_pred HHHHHHHHH-HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC--CCeEEEEEeeeCCCCcc
Q 007001 325 FRTVVDTLI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPA 385 (622)
Q Consensus 325 ~~~~I~~lr-~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~--~d~v~i~~ysP~PGTpa 385 (622)
+++++.... +.--.+.+..-+|=|+ .++++|.++..++++.++ ..++++-+|.|.+|.++
T Consensus 267 ll~a~~~~~~~~grrv~ieyvLi~Gv-NDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y 329 (373)
T PRK14459 267 VLDAARYYADATGRRVSIEYALIRDI-NDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKW 329 (373)
T ss_pred HHHHHHHHHHHhCCEEEEEEEEeCCC-CCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCC
Confidence 999977765 4411245555666665 799999999999999985 46899999999998753
No 117
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.00 E-value=4.5e-08 Score=105.09 Aligned_cols=184 Identities=15% Similarity=0.215 Sum_probs=129.0
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCC--CcEEEEee-cCCCCCCCCcCCCHHHHHHHHHH
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG--VKEVWLSS-EDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~G--vkeI~L~g-~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
....|.++.||+.+|.||..+.. |..|..+.++|++++..+...| ++.|+|+| +....+ . ++.+.++.+.+
T Consensus 100 ~t~CvssqvGC~~~C~FC~tg~~-g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln-~----~v~~~i~~l~~ 173 (347)
T PRK14453 100 ESFCISSQCGCGFGCRFCATGSI-GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALAN-P----ELFDALKILTD 173 (347)
T ss_pred eeEEEecCCCcCCCCCCCCCCCC-CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCC-H----HHHHHHHHHhc
Confidence 46789999999999999998853 6778899999999999776555 88999998 555443 1 34555554443
Q ss_pred hCCCC--CceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHH-h
Q 007001 262 ELPPD--GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIE-L 335 (622)
Q Consensus 262 ~l~~~--~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr~-~ 335 (622)
. ... +...+.+++.-. ...++.+.+.+. ...+.+.+-+.+++..+.+ ++.+..+++.++++.... .
T Consensus 174 ~-~~~~~~~r~itVsT~G~---~~~i~~l~~~~~----~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~ 245 (347)
T PRK14453 174 P-NLFGLSQRRITISTIGI---IPGIQRLTQEFP----QVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHT 245 (347)
T ss_pred c-cccCCCCCcEEEECCCC---chhHHHHHhhcc----CcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhc
Confidence 1 101 234566664321 112233433322 1345568889888887443 466888888887766555 3
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC----CCeEEEEEeeeCCCC
Q 007001 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYK----FPQVHISQFYPRPGT 383 (622)
Q Consensus 336 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~----~d~v~i~~ysP~PGT 383 (622)
-..+.+..-+|-|+ .++++++++.++|++.++ ...+++-+|.|.++.
T Consensus 246 ~~~V~iry~LI~Gv-NDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~ 296 (347)
T PRK14453 246 GRKVYIAYIMLEGV-NDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT 296 (347)
T ss_pred CCcEEEEEEeECCC-CCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC
Confidence 22477888888887 889999999999999874 578999999998875
No 118
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.97 E-value=2.5e-08 Score=103.46 Aligned_cols=193 Identities=17% Similarity=0.263 Sum_probs=137.1
Q ss_pred EEEEEeCCCCCCC----CCCcccCccCCCcCCCCHHHHHHHHHHHHHC-C--CcE--E-EEeecCCCCCCCCcC-CCHHH
Q 007001 186 VEILPINVGCLGA----CTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G--VKE--V-WLSSEDTGAYGRDIG-VNLPI 254 (622)
Q Consensus 186 ~a~I~isrGC~~~----CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~-G--vke--I-~L~g~d~~~yg~d~~-~~l~e 254 (622)
...|--++||.+. |.+|.++... .....+.++++.++...... . ..+ | +|+++-+.. ..+.. .....
T Consensus 48 l~vILrT~GC~w~~~~gC~MCgY~~d~-~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~ 125 (358)
T COG1244 48 LTVILRTRGCRWYREGGCYMCGYPADS-AGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRY 125 (358)
T ss_pred EEEEEecCCcceeccCCcceecccccc-CCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHH
Confidence 3456679999874 9999987642 35677899999999887763 1 223 3 344433322 11111 23345
Q ss_pred HHHHHHHhCCCCCceeEEEeecCCcchhH-HHHHHHHHHhCCCCceeecccCCCCCHHHH-HhhcCCCCHHHHHHHHHHH
Q 007001 255 LLNAIVAELPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTL 332 (622)
Q Consensus 255 LL~~l~~~l~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~~t~e~~~~~I~~l 332 (622)
+++.|.+ .+ ....+-+. .+|.+|.+ .+.++.+++.. .--.+.||+||.+|++. ..||||.|.++|.++++.+
T Consensus 126 Il~~is~-~~--~v~~vvvE-SRpE~I~eE~l~e~~~il~g--k~~EvaIGLETanD~ire~sINKGftF~df~~A~~~i 199 (358)
T COG1244 126 ILERISE-ND--NVKEVVVE-SRPEFIREERLEEITEILEG--KIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEII 199 (358)
T ss_pred HHHHHhh-cc--ceeEEEee-cCchhcCHHHHHHHHHhhCC--ceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 6666654 22 35677776 78988876 44555555432 24589999999999998 8899999999999999999
Q ss_pred HHhCCCCEEEEEEEEcCCCCCH----HHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC
Q 007001 333 IELVPGMQIATDIICGFPGETD----EDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK 389 (622)
Q Consensus 333 r~~~pgi~i~td~IvGfPGETe----edf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~ 389 (622)
|.+ |+.+.+++++-.|-=|+ +|...++. ..+-..+.+++.+-+...||-+..++
T Consensus 200 r~~--g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw 257 (358)
T COG1244 200 RNY--GAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLW 257 (358)
T ss_pred HHc--CCceeEEEEecccccChHHHHHHHHHHHH-HhccCCCeEEecccccchhhHHHHHH
Confidence 999 99999999999987665 34455555 33446689999999999999766554
No 119
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.96 E-value=1.4e-07 Score=102.13 Aligned_cols=186 Identities=15% Similarity=0.304 Sum_probs=127.5
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH----------CCCcEEEEeecCCCCCCCCcC--CC
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSSEDTGAYGRDIG--VN 251 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~----------~GvkeI~L~g~d~~~yg~d~~--~~ 251 (622)
.....|.++-||+.+|.||..+.. |..|..++++|++++..+.. .+++.|+|+|. |.... ..
T Consensus 102 ~~t~CvSsQvGC~~~C~FC~t~~~-g~~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL~N~d~ 175 (372)
T PRK11194 102 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPLLNLNN 175 (372)
T ss_pred CeeEEEecCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----CccccCHHH
Confidence 456788999999999999998753 66688999999999876543 12788888873 22210 12
Q ss_pred HHHHHHHHHHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHH
Q 007001 252 LPILLNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRT 327 (622)
Q Consensus 252 l~eLL~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~ 327 (622)
+.+.++.+.+.... -....+++++.- +.+. +.+++.... -.+.+.+-+.+++..+.+ ++.|..+++.+
T Consensus 176 v~~al~~l~~~~g~~i~~r~itVsTsG---~~~~---i~~l~~~~d--~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~ 247 (372)
T PRK11194 176 VVPAMEIMLDDFGFGLSKRRVTLSTSG---VVPA---LDKLGDMID--VALAISLHAPNDELRDEIVPINKKYNIETFLA 247 (372)
T ss_pred HHHHHHHHhhhhccCcCCCeEEEECCC---CchH---HHHHHhccC--eEEEeeccCCCHHHHHHhcCCcccccHHHHHH
Confidence 33444444432110 012367776432 1222 333333322 256677888899998554 35688888887
Q ss_pred HHHHHHHhC----CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 328 VVDTLIELV----PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 328 ~I~~lr~~~----pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
++....+.. ..+.+..-+|=|+ .++++++++..+|++.++. ++++-+|.|++|.++
T Consensus 248 a~~~y~~~~~~~~rrI~irypLIpGv-NDs~e~a~~La~ll~~l~~-~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 248 AVRRYLEKSNANQGRVTVEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 307 (372)
T ss_pred HHHHHHHhcccCCCeEEEEEEeECCC-CCCHHHHHHHHHHHhcCCc-eEEEecCCCCCCCCC
Confidence 776665543 2488888899898 8999999999999999874 999999999998654
No 120
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.96 E-value=1.4e-07 Score=101.37 Aligned_cols=185 Identities=18% Similarity=0.250 Sum_probs=124.1
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH---CCCcEEEEee-cCCCCCCCCcCCCHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSS-EDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~---~GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~l 259 (622)
.....|.++.||+.+|.||..+. .|..|..++++|++++..+.. .++..|+|+| +...... ..+.++++.+
T Consensus 100 ~~t~cissq~GC~l~C~fC~tg~-~g~~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln~----d~v~~~i~~l 174 (343)
T PRK14469 100 RITACISTQVGCPVKCIFCATGQ-SGFVRNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLNY----ENVIKSIKIL 174 (343)
T ss_pred CeEEEEEecCCCCCcCcCCCCCC-CCccccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhhH----HHHHHHHHHH
Confidence 45678999999999999998654 344577889999999875432 4678899998 3333220 1244555554
Q ss_pred HHhC-CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHh---hcCCCCHHHHHHHHHHHHHh
Q 007001 260 VAEL-PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA---MNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 260 ~~~l-~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~---MnR~~t~e~~~~~I~~lr~~ 335 (622)
...- ...+...+.++ ++- +.+. +.++... ++-..+.+.+.+.+++..+. ++|+++.+++++.++.+.+.
T Consensus 175 ~~~~~~~~g~~~itis-TnG--~~~~---i~~L~~~-~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~ 247 (343)
T PRK14469 175 NHKKMKNIGIRRITIS-TVG--IPEK---IIQLAEE-GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKK 247 (343)
T ss_pred hchhcccCCCCeEEEE-CCC--ChHH---HHHHHhh-CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHH
Confidence 3210 00123366664 333 1233 3334433 22226999999999998765 36789999999999876654
Q ss_pred -CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCC
Q 007001 336 -VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 382 (622)
Q Consensus 336 -~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PG 382 (622)
-..+.+..-+|-|+ .++++|+++..++++.++. ++++-+|.|.++
T Consensus 248 ~~~~v~i~yvlI~g~-NDs~ed~~~La~llk~~~~-~VnLIpynp~~~ 293 (343)
T PRK14469 248 TGNRVTIEYILIKGF-NDEIEDAKKLAELLKGLKV-FVNLIPVNPTVP 293 (343)
T ss_pred hCCeEEEEEEEECCC-CCCHHHHHHHHHHHhccCc-EEEEEecCCCCc
Confidence 22355555566564 7889999999999999874 689999998766
No 121
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.96 E-value=2e-07 Score=100.14 Aligned_cols=183 Identities=16% Similarity=0.286 Sum_probs=125.0
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHC-C-----CcEEEEee-cCCCCCCCCcCCCHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G-----VKEVWLSS-EDTGAYGRDIGVNLPILL 256 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~-G-----vkeI~L~g-~d~~~yg~d~~~~l~eLL 256 (622)
.....|.++.||+.+|.||..+.. |..|..++++|++++..+... | +++|+|.| ++... ++..++
T Consensus 92 ~~t~cvSsq~GC~l~C~fC~tg~~-g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPll-------n~~~v~ 163 (343)
T PRK14468 92 RKTICVSTMVGCPAGCAFCATGAM-GFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLL-------NYENVL 163 (343)
T ss_pred CCEEEEEecCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCcccc-------CHHHHH
Confidence 456789999999999999987543 567888999999999866543 2 56899997 33332 234555
Q ss_pred HHHHHhCCCCCc----eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHH
Q 007001 257 NAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVV 329 (622)
Q Consensus 257 ~~l~~~l~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I 329 (622)
+.+.......+. ..+++++.- +.+. +.+++... +-..|.+.+-+.+++..+++ +++++.+++.+.+
T Consensus 164 ~~i~~l~~~~g~~l~~r~itvST~G---~~~~---i~~L~~~~-l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l 236 (343)
T PRK14468 164 KAARIMLHPQALAMSPRRVTLSTVG---IPKG---IRRLAEED-LGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAV 236 (343)
T ss_pred HHHHHhcccccccccCceEEEECCC---ChHH---HHHHHHhC-cCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHH
Confidence 555422110111 356665332 1222 23333322 11258899999999999776 4778999999999
Q ss_pred HHHHHhC-CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCC
Q 007001 330 DTLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383 (622)
Q Consensus 330 ~~lr~~~-pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGT 383 (622)
+...+.. ..+.+..-+|=|+ .++++++.+..++++++. .++++-+|.|.++.
T Consensus 237 ~~~~~~~~~~V~ieyvLI~Gv-NDs~e~~~~L~~ll~~~~-~~VnLIPynp~~~~ 289 (343)
T PRK14468 237 RHYQAVTGRRVTLEYTMLKGV-NDHLWQAELLADLLRGLV-SHVNLIPFNPWEGS 289 (343)
T ss_pred HHHHHhcCCeEEEEEEEeCCC-cCCHHHHHHHHHHHhcCC-cEEEEEcCCCCCCC
Confidence 8665542 2256666666666 799999999999999986 48899999987764
No 122
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=98.95 E-value=1.5e-07 Score=101.45 Aligned_cols=188 Identities=15% Similarity=0.256 Sum_probs=125.0
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH------CCCcEEEEee-cCCCCCCCCcCCCHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA------DGVKEVWLSS-EDTGAYGRDIGVNLPILL 256 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~------~GvkeI~L~g-~d~~~yg~d~~~~l~eLL 256 (622)
.....|..+.||+.+|+||..+.. |..|..++++|++++..+.. .+++.|+|.| ++.... . ..+.+++
T Consensus 104 ~~t~cVSsQ~GC~l~C~fC~t~~~-g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln-~---d~v~~~l 178 (355)
T TIGR00048 104 RATVCVSSQVGCALGCTFCATAKG-GFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLN-L---NEVVKAM 178 (355)
T ss_pred CcEEEEecCCCCCCcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhC-H---HHHHHHH
Confidence 456789999999999999997653 55678999999999876532 2577899988 333221 0 1233444
Q ss_pred HHHHHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHHH
Q 007001 257 NAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTL 332 (622)
Q Consensus 257 ~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~l 332 (622)
+.+.+.... -+...+.+++ +- +.+. +.+++... +-..+.+.+-+.+++..+.+ +|.++.+++++.+...
T Consensus 179 ~~l~~~~g~~i~~~~itisT-~G--~~~~---i~~l~~~~-l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~ 251 (355)
T TIGR00048 179 EIMNDDFGLGISKRRITIST-SG--VVPK---IDILADKM-LQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRY 251 (355)
T ss_pred HHhhcccccCcCCCeEEEEC-CC--chHH---HHHHHHhC-CCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 444321100 0123566653 22 1232 33344322 11257799999999999765 6778999999888755
Q ss_pred -HHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 333 -IELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 333 -r~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
++.--.+.+..-+|-|+ .++++++++..++++.++. ++++-+|.|.++.++
T Consensus 252 ~~~~g~~VtieyvLI~Gv-NDs~e~a~~La~llk~l~~-~VnLIPynp~~~~~~ 303 (355)
T TIGR00048 252 LNKTGRRVTFEYVLLDGV-NDQVEHAEELAELLKGTKC-KVNLIPWNPFPEADY 303 (355)
T ss_pred HHHhCCEEEEEEEEECCC-CCCHHHHHHHHHHHhcCCC-ceEEEecccCCCCCC
Confidence 44411255666666676 7888999999999999874 789999999887654
No 123
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.94 E-value=9.3e-08 Score=102.55 Aligned_cols=188 Identities=19% Similarity=0.319 Sum_probs=134.0
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH-----------------CCCcEEEEeecCCCCCCC
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA-----------------DGVKEVWLSSEDTGAYGR 246 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~-----------------~GvkeI~L~g~d~~~yg~ 246 (622)
.....|.++-||+.+|.||.... -|-.|..++.+|++++..+.+ ..++.|+|.|. |.
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~-~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGM-----GE 179 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGT-LGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGM-----GE 179 (371)
T ss_pred CceEEEEccCCccCCCCcccCCC-CCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEcc-----CC
Confidence 45689999999999999998765 377899999999999987643 12678999874 33
Q ss_pred CcCCCHHHHHHHHHHhCCCC----CceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHh-h--cCC
Q 007001 247 DIGVNLPILLNAIVAELPPD----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-M--NRE 319 (622)
Q Consensus 247 d~~~~l~eLL~~l~~~l~~~----~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~-M--nR~ 319 (622)
.. .++..+++.+.-..... +..++.+++.- +... +.+++... .-..|.+.+-+.++++.+. | ||.
T Consensus 180 PL-~NydnV~~ai~il~d~~g~~is~R~ITVST~G---ivp~---I~~la~~~-~~v~LAiSLHA~~~e~R~~lmPin~~ 251 (371)
T PRK14461 180 PF-ANYDRWWQAVERLHDPQGFNLGARSMTVSTVG---LVKG---IRRLANER-LPINLAISLHAPDDALRSELMPVNRR 251 (371)
T ss_pred ch-hhHHHHHHHHHHhcCccccCcCCCceEEEeec---chhH---HHHHHhcc-cCceEEEEeCCCCHHHHHHhcCcccC
Confidence 32 24566777665322111 12466676542 2232 33444332 2247889999999999844 4 689
Q ss_pred CCHHHHHHHHHHHHHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-----CCeEEEEEeeeCCCCccc
Q 007001 320 YTLSDFRTVVDTLIELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYK-----FPQVHISQFYPRPGTPAA 386 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~~p-gi~i~td~IvGfPGETeedf~eTl~fl~el~-----~d~v~i~~ysP~PGTpa~ 386 (622)
|..+++.++++...+.-. .+.+..-+|=|+ .++++|.++..++++.++ .-++++-+|.|.||+++.
T Consensus 252 ypl~eLl~a~~~y~~~t~rrit~EYvLi~gv-NDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~ 323 (371)
T PRK14461 252 YPIADLMAATRDYIAKTRRRVSFEYVLLQGK-NDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG 323 (371)
T ss_pred CCHHHHHHHHHHHHHhhCCEEEEEEEEECCC-CCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC
Confidence 999999999988866421 256666666665 899999999999999873 358999999999999753
No 124
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.94 E-value=5.5e-08 Score=96.04 Aligned_cols=193 Identities=16% Similarity=0.184 Sum_probs=136.8
Q ss_pred EeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCce
Q 007001 190 PINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGST 269 (622)
Q Consensus 190 ~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~ 269 (622)
-+++-|..+|..|.-.+.++.. .-+-.+++.+...+.+.|+..+.|.|+-.. -|.=--..+.+.|+++.+... -..
T Consensus 16 VTG~yC~lnC~HCg~~~L~~Mi-~vt~~~l~k~~~el~kkGy~g~llSGGm~s-rg~VPl~kf~d~lK~lke~~~--l~i 91 (275)
T COG1856 16 VTGAYCSLNCPHCGRHYLEHMI-KVTTKSLLKRCMELEKKGYEGCLLSGGMDS-RGKVPLWKFKDELKALKERTG--LLI 91 (275)
T ss_pred EeccceEecChHHHHHHHHHhc-ccchHHHHHHHHHHHhcCceeEEEeCCcCC-CCCccHHHHHHHHHHHHHhhC--eEE
Confidence 4688899999999877776543 233488999999999999999999875322 121001356778888876532 112
Q ss_pred eEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh-cCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Q 007001 270 MLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-NREYTLSDFRTVVDTLIELVPGMQIATDIICG 348 (622)
Q Consensus 270 ~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M-nR~~t~e~~~~~I~~lr~~~pgi~i~td~IvG 348 (622)
...+++. .+.. +..+. ... ..-+.+-+ -|++++++++ +-..++++|.+.+..+++. |+.+..++++|
T Consensus 92 naHvGfv-----dE~~--~eklk-~~~-vdvvsLDf-vgDn~vIk~vy~l~ksv~dyl~~l~~L~e~--~irvvpHitiG 159 (275)
T COG1856 92 NAHVGFV-----DESD--LEKLK-EEL-VDVVSLDF-VGDNDVIKRVYKLPKSVEDYLRSLLLLKEN--GIRVVPHITIG 159 (275)
T ss_pred EEEeeec-----cHHH--HHHHH-Hhc-CcEEEEee-cCChHHHHHHHcCCccHHHHHHHHHHHHHc--CceeceeEEEE
Confidence 2333333 3211 22222 222 34455555 3566677665 4467999999999999999 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHHHH
Q 007001 349 FPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKK 398 (622)
Q Consensus 349 fPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~ 398 (622)
+.+-...-=.+.++.+.+..+|.+-+..+.|.|||.+.+.+..|.++..+
T Consensus 160 L~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~ 209 (275)
T COG1856 160 LDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIK 209 (275)
T ss_pred eccCcccchHHHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHH
Confidence 98766665568999999999999999999999999999887666554433
No 125
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.92 E-value=1e-07 Score=101.97 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=127.2
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHC-CCcEEEEee-cCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 186 VEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKEVWLSS-EDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~-GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
...|.++-||+.+|.||..... |-.|..++++|++++..+.+. .+++|+|.| ++.. .++.++++.+....
T Consensus 97 t~CvSsQvGC~~~C~FC~tg~~-g~~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl-------~N~d~vl~ai~~l~ 168 (344)
T PRK14464 97 GLCVSTQVGCAVGCVFCMTGRS-GLLRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPA-------HNLDNVLEAIDLLG 168 (344)
T ss_pred cEEEEccCCcCCCCCcCcCCCC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCccc-------CCHHHHHHHHHHhh
Confidence 5799999999999999987543 567888999999999987764 689999998 3332 23455555543211
Q ss_pred --CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHHHHHhCCC
Q 007001 264 --PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 264 --~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~lr~~~pg 338 (622)
..-+...+.++++-. .+...++.. . .+-..|.+.+-+.+++..+.+ ++.|+.+++.+++....+.. |
T Consensus 169 ~~~~i~~r~itiST~G~---~~~i~rL~~---~-~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~-g 240 (344)
T PRK14464 169 TEGGIGHKNLVFSTVGD---PRVFERLPQ---Q-RVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARAT-G 240 (344)
T ss_pred chhcCCCceEEEecccC---chHHHHHHH---h-cCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHH-C
Confidence 000234566654321 122222322 1 223467788999999998665 45789999999988887664 5
Q ss_pred --CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccc
Q 007001 339 --MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 386 (622)
Q Consensus 339 --i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~ 386 (622)
+.+..-+|=|+ .+++++..+..++++.+.. ++++-+|.|.+|++..
T Consensus 241 rri~~EyvLl~GV-NDs~e~a~~L~~~l~~~~~-~vNLIPyN~v~g~~~~ 288 (344)
T PRK14464 241 YPIQYQWTLLEGV-NDSDEEMDGIVRLLKGKYA-VMNLIPYNSVDGDAYR 288 (344)
T ss_pred CEEEEEEEEeCCC-CCCHHHHHHHHHHHhcccc-ccceecCCccCCCCcc
Confidence 34444445565 8999999999999998764 7899999999998654
No 126
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=98.89 E-value=1.6e-07 Score=100.12 Aligned_cols=183 Identities=17% Similarity=0.235 Sum_probs=119.8
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCcC-CCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 186 VEILPINVGCLGACTYCKTKHARGHLG-SYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~~r-sr~~e~Iv~Ei~~L~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
.+.+.++.||+.+|.||...... ..+ ..+.+++.+-+..+.+ .|+++|.|+|+|..... | ..|.++++.+.. +
T Consensus 97 r~l~~~t~~Cn~~Cr~C~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~-d--~~L~~ll~~l~~-i 171 (321)
T TIGR03821 97 RVLLIVTGGCAINCRYCFRRHFP-YQENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAK-D--HRLDWLLNLLEQ-I 171 (321)
T ss_pred EEEEEeCCCcCCcCcCCCCCCcC-CCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCC-c--hHHHHHHHHHHh-C
Confidence 45677999999999999864321 112 2233333333444443 48999999998876542 2 247888888865 4
Q ss_pred CCCCceeEEEee----cCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC
Q 007001 264 PPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM 339 (622)
Q Consensus 264 ~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi 339 (622)
+ ....+|+.+ ..|..+++ ++.++++..+.-..+.+.+.+.. ++ .+++.++++.++++ |+
T Consensus 172 ~--~~~~iri~tr~~~~~p~rit~---el~~~L~~~~~~~~~~~h~dh~~-Ei---------~d~~~~ai~~L~~~--Gi 234 (321)
T TIGR03821 172 P--HLKRLRIHTRLPVVIPDRITS---GLCDLLANSRLQTVLVVHINHAN-EI---------DAEVADALAKLRNA--GI 234 (321)
T ss_pred C--CCcEEEEecCcceeeHHHhhH---HHHHHHHhcCCcEEEEeeCCChH-hC---------cHHHHHHHHHHHHc--CC
Confidence 4 556778775 34554554 34444444332222234555542 22 14588899999999 97
Q ss_pred EEEEEEEE--cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHH
Q 007001 340 QIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSA 394 (622)
Q Consensus 340 ~i~td~Iv--GfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~ 394 (622)
.+.....+ |+ .++.+++.+.++++.++++...++|.+.|-.|+.-+ .++.+
T Consensus 235 ~v~~qtvllkgi-NDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f---~v~~~ 287 (321)
T TIGR03821 235 TLLNQSVLLRGV-NDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHF---DVDDE 287 (321)
T ss_pred EEEecceeeCCC-CCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccc---cCCHH
Confidence 76544433 43 588999999999999999999999999999887632 45544
No 127
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.86 E-value=5.6e-07 Score=96.83 Aligned_cols=187 Identities=16% Similarity=0.250 Sum_probs=127.5
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHC------CCcEEEEeecCCCCCCCCc--CCCHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD------GVKEVWLSSEDTGAYGRDI--GVNLPIL 255 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~------GvkeI~L~g~d~~~yg~d~--~~~l~eL 255 (622)
.....|..+.||+.+|.||..+. .|..|..++++|++++..+... ....|+|.|. |... ...+.++
T Consensus 109 r~t~CvSsQvGC~~~C~FCatg~-~g~~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~ 182 (356)
T PRK14462 109 KYTVCVSSQVGCKVGCAFCLTAK-GGFVRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKA 182 (356)
T ss_pred CceEeeeccccCCCCCccCCCCC-CCCcccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHH
Confidence 45678999999999999998764 3667889999999999865442 1456777742 2221 0234455
Q ss_pred HHHHHHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHH
Q 007001 256 LNAIVAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT 331 (622)
Q Consensus 256 L~~l~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~ 331 (622)
++.+.+.-.. .+...+.+++.- +.+. +.+++... +-..+.+.+=+.+++..+.+ ++.|..++++++++.
T Consensus 183 l~~l~~~~Gl~~~~r~itVsTsG---~~~~---i~~L~~~d-l~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~ 255 (356)
T PRK14462 183 IKIFSENDGLAISPRRQTISTSG---LASK---IKKLGEMN-LGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRK 255 (356)
T ss_pred HHHhcCccCCCcCCCceEEECCC---ChHH---HHHHHhcC-CCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHH
Confidence 5555432100 012356666432 1223 33333332 12467788999999998655 577889999998874
Q ss_pred HH-HhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 332 LI-ELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 332 lr-~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
.. +.-..+.+..-+|-|+ .+++++.++..+|++.++ .++++-+|.|.++.++
T Consensus 256 y~~~~~~~i~ieyvLI~Gv-NDs~e~a~~La~llk~l~-~~VnLIPyn~~~~~~~ 308 (356)
T PRK14462 256 FPIDQRKRVMFEYLVIKDV-NDDLKSAKKLVKLLNGIK-AKVNLILFNPHEGSKF 308 (356)
T ss_pred HHHHhCCeEEEEEEEECCC-CCCHHHHHHHHHHHhhcC-cEEEEEeCCCCCCCCC
Confidence 44 4422477778888887 899999999999999986 5999999999988764
No 128
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.85 E-value=4.8e-07 Score=96.88 Aligned_cols=179 Identities=13% Similarity=0.236 Sum_probs=123.1
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~---~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
.....|.++-||+.+|+||.... .|-.|..+..+|++++..+.+ ..+.+|+|.|- |... .++..+++.+.
T Consensus 104 ~~t~CvSsQvGC~m~C~FC~tg~-~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGm-----GEPL-~N~d~V~~~~~ 176 (342)
T PRK14465 104 RKTICISSQIGCTLNCKFCATAK-LEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGM-----GEPM-HNYFNVIRAAS 176 (342)
T ss_pred ceEEEEEecCCCCCCCCCCcCCC-CCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcC-----Ccch-hhHHHHHHHHH
Confidence 35678999999999999998865 466688899999999977654 35788999972 3322 23344444443
Q ss_pred HhCCCC-----CceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHHH
Q 007001 261 AELPPD-----GSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDTL 332 (622)
Q Consensus 261 ~~l~~~-----~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~l 332 (622)
.+... +...+++++.- +.+. +.+++.... --.|.|.+-+.+++....+ ++.|..+++.+++..+
T Consensus 177 -~l~~~~~~~~~~r~itvST~G---~~~~---i~~l~~~~~-~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~ 248 (342)
T PRK14465 177 -ILHDPDAFNLGAKRITISTSG---VVNG---IRRFIENKE-PYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDF 248 (342)
T ss_pred -HHhChhhhcCCCCeEEEeCCC---chHH---HHHHHhhcc-CceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHH
Confidence 12110 23466666322 2232 333332221 1278889999999998655 7889999999999977
Q ss_pred HHhCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee
Q 007001 333 IELVP-GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 379 (622)
Q Consensus 333 r~~~p-gi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP 379 (622)
.+... .+.+..-+|=|+ .+++|++++..++++.++ .++++-+|.|
T Consensus 249 ~~~~~r~v~ieyvLI~Gv-NDs~eda~~L~~ll~~l~-~kVnLIPyN~ 294 (342)
T PRK14465 249 TRELKRRITFEYVMIPGV-NMGRENANKLVKIARSLD-CKINVIPLNT 294 (342)
T ss_pred HHHcCCEEEEEEEEECCc-cCCHHHHHHHHHHHhhCC-CcEEEEccCC
Confidence 64422 244545555565 689999999999999987 5799999998
No 129
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.76 E-value=1.7e-06 Score=93.02 Aligned_cols=187 Identities=13% Similarity=0.217 Sum_probs=122.0
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHC---CCcEEEEee-cCCCCCCCCcCCCHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSS-EDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~---GvkeI~L~g-~d~~~yg~d~~~~l~eLL~~l 259 (622)
...+.|.++.||+.+|.||..+. -|..|..++++|++++...... ....+++.| +..... ...+.++++.+
T Consensus 100 ~~t~cvSsqvGC~~~C~FC~tg~-~G~~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln----~d~v~~~l~~l 174 (342)
T PRK14454 100 GNSICVSTQVGCRMGCKFCASTI-GGMVRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDN----YENVMKFLKIV 174 (342)
T ss_pred CCEEEEEcCCCCCCcCCcCCCCC-CCCcccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcC----HHHHHHHHHHH
Confidence 45689999999999999998753 3567889999999999876541 345666553 222211 02345555555
Q ss_pred HHhCCC-CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHHHHH-HHH
Q 007001 260 VAELPP-DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTVVDT-LIE 334 (622)
Q Consensus 260 ~~~l~~-~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~I~~-lr~ 334 (622)
.+.... -+...+.+++.- +.+. +.+++...- -..+.+.+=+.+++..+.+ ++.+..+++.+++.. +.+
T Consensus 175 ~~~~gi~~~~r~itvsTsG---~~p~---i~~l~~~~~-~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~ 247 (342)
T PRK14454 175 NSPYGLNIGQRHITLSTCG---IVPK---IYELADENL-QITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINK 247 (342)
T ss_pred hcccccCcCCCceEEECcC---ChhH---HHHHHhhcc-cceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 431100 011256666421 1122 233333221 1247789999999998655 356788888777765 444
Q ss_pred hCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 335 LVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 335 ~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
.-..+.+..-+|=|+ .++++++++..++++.+. ..+++-+|.|.++..
T Consensus 248 ~~~rv~iey~LI~gv-NDs~eda~~La~llk~l~-~~VnLiPyn~~~~~~ 295 (342)
T PRK14454 248 TNRRITFEYALVKGV-NDSKEDAKELGKLLKGML-CHVNLIPVNEVKENG 295 (342)
T ss_pred hCCEEEEEEEeECCC-CCCHHHHHHHHHHHhcCC-ceEEEEecCCCCCCC
Confidence 412366667777777 799999999999999874 589999999987764
No 130
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=98.75 E-value=5.4e-08 Score=78.27 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=46.9
Q ss_pred ccCCCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 414 LGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 414 ~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
++++|++++|+||+.+ +++.++||+++|..|+|++....+|++++|+|+++.+++|.|+++
T Consensus 1 ~~~~G~~~~VlVe~~~-~~g~~~gr~~~~~~V~v~~~~~~iG~~v~v~I~~~~~~~l~G~~v 61 (61)
T PF01938_consen 1 QSYVGKTLEVLVEELG-DEGQGIGRTDNGKVVFVPGGLPLIGEFVKVRITKAKKNYLFGELV 61 (61)
T ss_dssp ---TTEEEEEEEEEE--TTSEEEEEET-TEEEEETT--T--TEEEEEEEEEE-SSEEEEEEE
T ss_pred CccCCcEEEEEEEEec-CCCEEEEEeCCCeEEEECCCCCCCCCEEEEEEEEeeCCcEEEEEC
Confidence 4689999999999987 445789999999999998764447999999999999999999986
No 131
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=98.71 E-value=1.1e-06 Score=96.01 Aligned_cols=183 Identities=15% Similarity=0.233 Sum_probs=131.1
Q ss_pred CCccEEEEEeCCCCCCCCCCcccCccCC-CcCCCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 007001 182 RNKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 182 ~~~~~a~I~isrGC~~~CsFC~ip~~rG-~~rsr~~e~Iv~Ei~~L~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l 259 (622)
+++-++.+.++.+|+..|.||.-....| .....+.+++.+-++++.+. ++++|.|+|+|...... ..|..+++.|
T Consensus 105 rYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d---~~L~~iL~~L 181 (417)
T TIGR03820 105 RYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSD---DYLDWILTEL 181 (417)
T ss_pred ccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCCh---HHHHHHHHHH
Confidence 4456788999999999999997654323 24556788888888888774 99999999999877633 2355667877
Q ss_pred HHhCCCCCceeEEEeecC----CcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007001 260 VAELPPDGSTMLRIGMTN----PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~----p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
.+ ++ ....+|+++-- |..+++. +.++++..+ .+.+++...+++- ..++..+++++++++
T Consensus 182 ~~-Ip--hV~~IRI~TR~pvv~P~RIT~e---ll~~Lk~~~---~~~v~~h~nhp~E--------it~~a~~Al~~L~~a 244 (417)
T TIGR03820 182 RA-IP--HVEVIRIGTRVPVVLPQRITDE---LVAILKKHH---PVWLNTHFNHPRE--------ITASSKKALAKLADA 244 (417)
T ss_pred hh-cC--CCceEEEeeccccccccccCHH---HHHHHHhcC---CeEEEEeCCChHh--------ChHHHHHHHHHHHHc
Confidence 65 55 66778887432 5556653 444444333 2334444444432 258899999999999
Q ss_pred CCCCEEE--EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc
Q 007001 336 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387 (622)
Q Consensus 336 ~pgi~i~--td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~ 387 (622)
|+.+. +-++-| =.++.+.+.+..+-+.++++.--++|..-+-+||.-|+
T Consensus 245 --GI~l~nQsVLLkG-VND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFr 295 (417)
T TIGR03820 245 --GIPLGNQSVLLAG-VNDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFR 295 (417)
T ss_pred --CCEEEeeceEECC-cCCCHHHHHHHHHHHHHCCCeeceeeeccCCCCccccc
Confidence 97654 566667 48899999999999999998777888888889986554
No 132
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=98.69 E-value=1.5e-06 Score=92.59 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=116.3
Q ss_pred eCCCCCCCCCCcccCccCC------CcCCCCHHHHHHHHHHHHH---CC-----------------CcEEEEe-ecCCCC
Q 007001 191 INVGCLGACTYCKTKHARG------HLGSYTVESLVGRVRTVIA---DG-----------------VKEVWLS-SEDTGA 243 (622)
Q Consensus 191 isrGC~~~CsFC~ip~~rG------~~rsr~~e~Iv~Ei~~L~~---~G-----------------vkeI~L~-g~d~~~ 243 (622)
+..||+.+|.||.-+.... ..+..++++|++++..... .| .+.+.|+ +++.+.
T Consensus 64 ~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL 143 (322)
T PRK13762 64 VVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTL 143 (322)
T ss_pred hhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccc
Confidence 4668999999998764332 1346679999999976532 12 2335554 223333
Q ss_pred CCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCC---C
Q 007001 244 YGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE---Y 320 (622)
Q Consensus 244 yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~---~ 320 (622)
| ..|.++++.+.+. +. .+.+. +|-. +.+. +..+ . .. ...+.+.+.+.+++..+.+.|+ .
T Consensus 144 ~-----p~l~eli~~~k~~----Gi-~~~L~-TNG~-~~e~---l~~L-~-~~-~d~i~VSLda~~~e~~~~i~~~~~~~ 205 (322)
T PRK13762 144 Y-----PYLPELIEEFHKR----GF-TTFLV-TNGT-RPDV---LEKL-E-EE-PTQLYVSLDAPDEETYKKINRPVIPD 205 (322)
T ss_pred h-----hhHHHHHHHHHHc----CC-CEEEE-CCCC-CHHH---HHHH-H-hc-CCEEEEEccCCCHHHHHHHhCCCCCC
Confidence 3 3578888887653 33 34443 4543 2232 3333 2 22 4688899999999999999874 5
Q ss_pred CHHHHHHHHHHHHHhCCCC--EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 321 TLSDFRTVVDTLIELVPGM--QIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 321 t~e~~~~~I~~lr~~~pgi--~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
+.+.+.+.++.+++. +. .+.+.++ ||.+..+..+..+++++++++.+.+.+|.+.....
T Consensus 206 ~~~~vl~~L~~l~~~--~~~~~ir~tlv---~g~Nd~e~~~~a~l~~~~~~~~Iel~~y~~~G~~k 266 (322)
T PRK13762 206 AWERILETLELLPSK--KTRTVIRITLV---KGYNMHDPEGFAKLIERANPDFVEVKAYMHVGYSR 266 (322)
T ss_pred cHHHHHHHHHHHHhC--CCCEEEEEEEE---CCcCccHHHHHHHHHHHcCCCEEEEECCeECCCcc
Confidence 889999999999998 54 4444444 45566666689999999999999999999876653
No 133
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=98.65 E-value=2.3e-07 Score=94.16 Aligned_cols=179 Identities=21% Similarity=0.323 Sum_probs=121.8
Q ss_pred EEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCC
Q 007001 188 ILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELP 264 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~~l~ 264 (622)
+.-.++-|...|.||++...|.+ .-...|+.. ++.+..-|+..|+|++.|--... |.+ ..+.+-++.|.+.-
T Consensus 114 IMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPeNT---AeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k~- 188 (360)
T KOG2672|consen 114 IMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPENT---AEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEKA- 188 (360)
T ss_pred EEeecCccccCcceeeeecCCCCcCCCCCCcccH---HHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHHhhC-
Confidence 44568999999999999887753 333445554 44445679999999986432211 111 35788888886543
Q ss_pred CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 007001 265 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td 344 (622)
..+-+..+.|++- ..++-+..++ ..+ ..-+.-.+|+...-.---=.|..+..+-+.+++.+++..|++...+.
T Consensus 189 ----p~ilvE~L~pDF~-Gd~~~Ve~va-~SG-LDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litkts 261 (360)
T KOG2672|consen 189 ----PEILVECLTPDFR-GDLKAVEKVA-KSG-LDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTS 261 (360)
T ss_pred ----cccchhhcCcccc-CchHHHHHHH-hcC-ccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhh
Confidence 3555666777643 3333333333 333 23333345544321111123556788889999999999999888899
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeee
Q 007001 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYP 379 (622)
Q Consensus 345 ~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP 379 (622)
+|.|+ |||+|++.+|++.+++...|.+.+.+|++
T Consensus 262 iMlgl-getdeei~~tl~dLr~~~vdv~t~gqym~ 295 (360)
T KOG2672|consen 262 IMLGL-GETDEEIKQTLKDLRAADVDVVTFGQYMQ 295 (360)
T ss_pred hhhcc-CCCHHHHHHHHHHHHHcCCcEEecccccC
Confidence 99998 99999999999999999999999888874
No 134
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=98.64 E-value=9.1e-07 Score=91.94 Aligned_cols=193 Identities=19% Similarity=0.351 Sum_probs=129.7
Q ss_pred ccEEEEEeC--CCCCCCCCCcccCcc-----------CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCC
Q 007001 184 KFVEILPIN--VGCLGACTYCKTKHA-----------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV 250 (622)
Q Consensus 184 ~~~a~I~is--rGC~~~CsFC~ip~~-----------rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~ 250 (622)
...+++.+. .||-..|+||..... |+.+-..+++++++-+..-.. .++.|.+.-. +|++.. .
T Consensus 28 ~~ta~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g-~~~rici~~i---~~p~~~-~ 102 (339)
T COG2516 28 PTTAYLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLG-NFKRICIQQI---AYPRAL-N 102 (339)
T ss_pred cceeeeeeecCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhhc-ccccccceee---cccccc-c
Confidence 556788887 999999999965321 111222344555554443221 2344554322 233221 2
Q ss_pred CHHHHHHHHHHhCCCCCceeEEEe-ecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC----CCCHHHH
Q 007001 251 NLPILLNAIVAELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDF 325 (622)
Q Consensus 251 ~l~eLL~~l~~~l~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR----~~t~e~~ 325 (622)
++..+++++.-.+ ...+.++ .+.+....+. +....+.+ ..++.++++..+.++++.+.| .|+.|.+
T Consensus 103 d~~~i~~~~~~~~----~~~itiseci~~~~~~~~---l~e~~klg--~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~ 173 (339)
T COG2516 103 DLKLILERLHIRL----GDPITISECITAVSLKEE---LEEYRKLG--ADYLGVAEDAANEELFEKVRKTSGSPHSWERY 173 (339)
T ss_pred hhhhhhhhhhhcc----CCceehhhhhhcccchHH---HHHHHhcc--hhhhhHHHHhcCHHHHHHHHhccCCCCcHHHH
Confidence 3455566654222 1233333 1233322333 33344333 568899999999999988754 3789999
Q ss_pred HHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCC
Q 007001 326 RTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVP 392 (622)
Q Consensus 326 ~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~ 392 (622)
.+.++++.++|+.-.+.+++|+|+ |||+.++.+++..+...+. .+|+|.|.|..||.+-+...+|
T Consensus 174 ~~~l~~~~~~~~k~rv~ihliVgl-GesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r~~~p 238 (339)
T COG2516 174 WEFLEKVAEAFGKGRVGIHLIVGL-GESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENRKPPP 238 (339)
T ss_pred HHHHHHHHHHhccCCcceeEEecc-CCchHHHHHHHHHHHhcCc-eEEEEEecccccccccCCCCCc
Confidence 999999999999789999999995 9999999999999999885 7999999999999998876555
No 135
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=98.63 E-value=2e-06 Score=91.40 Aligned_cols=186 Identities=17% Similarity=0.332 Sum_probs=128.5
Q ss_pred CccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHC-C------CcEEEEeecCCCCCCCCcCCCHHHH
Q 007001 183 NKFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-G------VKEVWLSSEDTGAYGRDIGVNLPIL 255 (622)
Q Consensus 183 ~~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~-G------vkeI~L~g~d~~~yg~d~~~~l~eL 255 (622)
......|.++-||+-.|+||.+.. .|..|-.+..+|++++..+.+. | +..|+|.|- |... .++..+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~-~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGM-----GEPl-~N~dnV 171 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQ-GGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGM-----GEPL-LNLDNV 171 (349)
T ss_pred CCceEEEecCCCcCCCCCeecccc-ccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecC-----Cchh-hhHHHH
Confidence 345678999999999999999765 3678899999999999987642 2 556888874 3221 234455
Q ss_pred HHHHHHhCCCC--Cc--eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHHHHH
Q 007001 256 LNAIVAELPPD--GS--TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDFRTV 328 (622)
Q Consensus 256 L~~l~~~l~~~--~~--~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~~~~ 328 (622)
+.++.-..... +. .++++++. .+...+.++.. ... -..+.|.+.+.+++....+ ||.|+.++..++
T Consensus 172 ~~a~~i~~~~~G~~ls~R~iTvSTs---Gi~~~I~~l~~--~~~--~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a 244 (349)
T COG0820 172 VKALEIINDDEGLGLSKRRITVSTS---GIVPRIRKLAD--EQL--GVALAISLHAPNDELRDQLMPINKKYPIEELLEA 244 (349)
T ss_pred HHHHHhhcCcccccccceEEEEecC---CCchhHHHHHh--hcC--CeEEEEecCCCCHHHHhhhhccccCCCHHHHHHH
Confidence 55543221111 12 34455432 34444434432 222 3478899999999987443 888999999999
Q ss_pred HHHHHHhCCC-CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 329 VDTLIELVPG-MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 329 I~~lr~~~pg-i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
++...+.-.. +++..-++=|. .+..++.++.+++++.++- ++++-+|.|.||+.
T Consensus 245 ~r~Y~~~t~~rVt~EY~Ll~~V-ND~~e~A~~L~~ll~~~~~-~VNLIP~Np~~~~~ 299 (349)
T COG0820 245 IRYYPEKSGRRVTFEYVLLDGV-NDSLEHAKELAKLLKGIPC-KVNLIPYNPVPGSD 299 (349)
T ss_pred HHhhhhccCceEEEEeeecccc-cCCHHHHHHHHHHhcCCCc-eEEEeecCCCCCCC
Confidence 8887765322 45555555555 6678999999999988875 89999999999998
No 136
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=98.63 E-value=2.2e-06 Score=89.39 Aligned_cols=175 Identities=18% Similarity=0.286 Sum_probs=125.1
Q ss_pred CCCCCCCCcccCccC----CCcCCCCHHHHHHHHHHHHHC------CCcEEEEeec-CCCCCCCCcCCCHHHHHHHHHHh
Q 007001 194 GCLGACTYCKTKHAR----GHLGSYTVESLVGRVRTVIAD------GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 194 GC~~~CsFC~ip~~r----G~~rsr~~e~Iv~Ei~~L~~~------GvkeI~L~g~-d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
=|.++|-||...... ++....+.++|.++++.+... ..+.+.|.+. ..+.| .+|.+|++.+.+.
T Consensus 33 ~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy-----~~L~elI~~~k~~ 107 (296)
T COG0731 33 WCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY-----PNLGELIEEIKKR 107 (296)
T ss_pred hhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccc-----cCHHHHHHHHHhc
Confidence 499999999873221 244566789999999998875 3566666542 23333 5789999999763
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCC---CHHHHHHHHHHHHHh-CCC
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY---TLSDFRTVVDTLIEL-VPG 338 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~---t~e~~~~~I~~lr~~-~pg 338 (622)
+... .+--+|... .+. +.++. . ...+.+.+.+.+.+.+++++|++ ..+.+.+.++.+++. --.
T Consensus 108 ----g~~~-tflvTNgsl-pdv---~~~L~-~---~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~ 174 (296)
T COG0731 108 ----GKKT-TFLVTNGSL-PDV---LEELK-L---PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGR 174 (296)
T ss_pred ----CCce-EEEEeCCCh-HHH---HHHhc-c---CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCc
Confidence 2222 222244432 221 22222 2 46888999999999999999995 678888999999886 334
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
+.+.+.++=|+ ..+++++++..++++++.++++.+..|+ +||..-+.+
T Consensus 175 ~vir~tlvkg~-N~~~e~~~~~a~ll~~~~Pd~velk~~~-rpgas~~~l 222 (296)
T COG0731 175 TVIRTTLVKGI-NDDEEELEEYAELLERINPDFVELKTYM-RPGASRYRL 222 (296)
T ss_pred EEEEEEEeccc-cCChHHHHHHHHHHHhcCCCeEEEecCc-cCChHhhcc
Confidence 67888888888 5677789999999999999999999987 556555444
No 137
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=98.44 E-value=2e-05 Score=86.33 Aligned_cols=166 Identities=16% Similarity=0.161 Sum_probs=111.7
Q ss_pred CCCCcccCccCCCcCCCCHHHHHHHHHHHHHC---CCcEEEEeec-CCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEE
Q 007001 198 ACTYCKTKHARGHLGSYTVESLVGRVRTVIAD---GVKEVWLSSE-DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRI 273 (622)
Q Consensus 198 ~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~---GvkeI~L~g~-d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri 273 (622)
.|-||......-.-+..++++|+++++..... ....+.|.|+ ++..| ..+.+|++.+.+. +. .+.+
T Consensus 38 ~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~-----~~l~eLl~~lk~~----gi-~taI 107 (404)
T TIGR03278 38 GCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCY-----PELEELTKGLSDL----GL-PIHL 107 (404)
T ss_pred CCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccC-----HHHHHHHHHHHhC----CC-CEEE
Confidence 67788544322234677999999999986542 3466788775 44444 3578888888752 22 3555
Q ss_pred eecCCcch-hHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Q 007001 274 GMTNPPFI-LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352 (622)
Q Consensus 274 ~~~~p~~i-~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGE 352 (622)
.+++...+ +. +.+.+++... ...+.+.+.|.++++.+.|-+.-..+.+++.++.+.+. ..+.+..-+| ||-
T Consensus 108 ~~TnG~~l~~~--e~~~~L~~~g--ld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~-~~v~~~ivlI---PGi 179 (404)
T TIGR03278 108 GYTSGKGFDDP--EIAEFLIDNG--VREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCES-CEVHAASVII---PGV 179 (404)
T ss_pred eCCCCcccCCH--HHHHHHHHcC--CCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhc-CCEEEEEEEe---CCc
Confidence 44553322 32 2244455432 57899999999999998865544558899999999885 2334444444 555
Q ss_pred CH-HHHHHHHHHHHhcCCCeEEEEEeeeCC
Q 007001 353 TD-EDFNQTVNLIKEYKFPQVHISQFYPRP 381 (622)
Q Consensus 353 Te-edf~eTl~fl~el~~d~v~i~~ysP~P 381 (622)
++ +++.++++++.++++..+++.+|.+.-
T Consensus 180 ND~eel~~ti~~L~~lg~~~V~L~~y~~~g 209 (404)
T TIGR03278 180 NDGDVLWKTCADLESWGAKALILMRFANTE 209 (404)
T ss_pred cCcHHHHHHHHHHHHCCCCEEEEEeccccc
Confidence 65 555799999999999999999997643
No 138
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.34 E-value=0.00014 Score=77.06 Aligned_cols=181 Identities=12% Similarity=0.177 Sum_probs=127.7
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCC-CcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADG-VKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~G-vkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
+....+.++.-|+.+|.||..........-.+.++..+.+..+.+.| ..-+.+.|++.... .++.++++...+.
T Consensus 18 p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~-----~d~~ei~~~~~~~ 92 (347)
T COG0535 18 PLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLR-----PDLLEIVEYARKK 92 (347)
T ss_pred CcEEEEeeccccCCcCcccccccCCCCccccCHHHHHHHHHHHHHcCCeeEEEEeCCCcccc-----ccHHHHHHHHhhc
Confidence 55667889999999999997665432234556777776777788888 77788887766554 3567777776542
Q ss_pred CCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHH-HHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 007001 263 LPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV-LSAMNREYTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~v-Lk~MnR~~t~e~~~~~I~~lr~~~pgi~i 341 (622)
......+. ++...+++.. +..+. ..+ ..++.+.+++.+++. ....++....+...+.++.+++. |+.+
T Consensus 93 ----~~~~~~~~-TnG~~~~~~~--~~~l~-~~g-~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~--g~~~ 161 (347)
T COG0535 93 ----GGIRVSLS-TNGTLLTEEV--LEKLK-EAG-LDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEA--GILV 161 (347)
T ss_pred ----CCeEEEEe-CCCccCCHHH--HHHHH-hcC-CcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHc--CCee
Confidence 12233333 4442233322 22233 323 689999999999999 55556678889999999999988 8763
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCC
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 382 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PG 382 (622)
.+.+-.+..+.+++.+.++++.+++++...++.+.|...
T Consensus 162 --~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~ 200 (347)
T COG0535 162 --VINTTVTKINYDELPEIADLAAELGVDELNVFPLIPVGR 200 (347)
T ss_pred --eEEEEEecCcHHHHHHHHHHHHHcCCCEEEEEEEeeccc
Confidence 334444677999999999999999998888888887543
No 139
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.28 E-value=3.7e-05 Score=81.05 Aligned_cols=188 Identities=19% Similarity=0.194 Sum_probs=125.3
Q ss_pred EEEEeCCCCCCCCCCcccCccCCCc-CC----CCHHHHHHHHHHHHH-CCCc-EEEEeecCCCCCCCCcCCCHHHHHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHARGHL-GS----YTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG~~-rs----r~~e~Iv~Ei~~L~~-~Gvk-eI~L~g~d~~~yg~d~~~~l~eLL~~l 259 (622)
-.+..-+||.+.|.||-...+.+.. .+ ...+.+++.++.-.. .+.+ ..+.+|-++-.|.... .-..|.+.+
T Consensus 31 y~inpy~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E--~~~~ltR~i 108 (297)
T COG1533 31 YTLNPYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIE--KEYRLTRKI 108 (297)
T ss_pred eecCCcCCCCCCCceeecccccccccCCCceeeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcch--HHHHHHHHH
Confidence 3678899999999999887555433 22 234557777766443 3333 3455565666675521 112333333
Q ss_pred HHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCC
Q 007001 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pg 338 (622)
.+.+.. ....+.+. +-...+..+++.|.++..... -.+.+.+-+.++++.+.+--+ -+.++-.++++.+.++ |
T Consensus 109 lei~~~-~~~~v~I~-TKS~lv~RDld~l~~~~~~~~--v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~ea--G 182 (297)
T COG1533 109 LEILLK-YGFPVSIV-TKSALVLRDLDLLLELAERGK--VRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEA--G 182 (297)
T ss_pred HHHHHH-cCCcEEEE-ECCcchhhhHHHHHhhhhccc--eEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHC--C
Confidence 332210 23456665 333345556655665554432 477888888888888888666 5889999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCC
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 382 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PG 382 (622)
+.+...+--=+|+.|++++++.++.+.+.+...+..+.+....+
T Consensus 183 i~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~~ 226 (297)
T COG1533 183 IPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRLD 226 (297)
T ss_pred CeEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEeeeeeccHH
Confidence 98877776668999999999999999999988776665544333
No 140
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.24 E-value=2.5e-06 Score=85.70 Aligned_cols=181 Identities=18% Similarity=0.298 Sum_probs=117.7
Q ss_pred CCCCCCCCCCcccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC
Q 007001 192 NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG 267 (622)
Q Consensus 192 srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~ 267 (622)
+-||.-.|.||....-. | ..+....++|+++++...+.|-..+.+...=-...|+. ..|..+++.|.+. ...+
T Consensus 91 tGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk--~~fk~IlE~ikev-r~Mg 167 (380)
T KOG2900|consen 91 TGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRK--SAFKRILEMIKEV-RDMG 167 (380)
T ss_pred cCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccch--hHHHHHHHHHHHH-HcCC
Confidence 67899999999875322 3 25677899999999999999999888754211112332 4566666666542 2111
Q ss_pred -ceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 007001 268 -STMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII 346 (622)
Q Consensus 268 -~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~I 346 (622)
..-+.+++++-.. ..++ +.+++ ....-.+.+. .+-...+--.-+.++-++.|+.+|++ ||.+.+.=|
T Consensus 168 mEvCvTLGMv~~qQ-------AkeL-KdAGL-TAYNHNlDTS-REyYskvItTRtYDdRL~Ti~nvr~a--GikvCsGGI 235 (380)
T KOG2900|consen 168 MEVCVTLGMVDQQQ-------AKEL-KDAGL-TAYNHNLDTS-REYYSKVITTRTYDDRLQTIKNVREA--GIKVCSGGI 235 (380)
T ss_pred ceeeeeeccccHHH-------HHHH-Hhccc-eecccCccch-hhhhcccceecchHHHHHHHHHHHHh--cceeccccc
Confidence 1335566554321 1122 23332 2222223222 22222222223678899999999999 999999999
Q ss_pred EcCCCCCHHHHHHHHHHHHhcC--CCeEEEEEeeeCCCCccccC
Q 007001 347 CGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 347 vGfPGETeedf~eTl~fl~el~--~d~v~i~~ysP~PGTpa~~~ 388 (622)
+|+ ||.++|-.-.+.-+..++ +..+-++.+.+.+|||+.+-
T Consensus 236 lGL-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~ 278 (380)
T KOG2900|consen 236 LGL-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADE 278 (380)
T ss_pred ccc-cccccceeeeeeeeccCCCCCcccccceEEecCCcccchh
Confidence 998 999999776666666553 57889999999999999874
No 141
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=98.24 E-value=2.7e-05 Score=80.26 Aligned_cols=186 Identities=20% Similarity=0.269 Sum_probs=119.6
Q ss_pred eCCCCCCCCCCcccCccCCCc-CCCCHHHHHHHHHHHHHCCCcE-EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCc
Q 007001 191 INVGCLGACTYCKTKHARGHL-GSYTVESLVGRVRTVIADGVKE-VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268 (622)
Q Consensus 191 isrGC~~~CsFC~ip~~rG~~-rsr~~e~Iv~Ei~~L~~~Gvke-I~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~ 268 (622)
.+.-|-+.|.||+...-.... ...++++|++---.+++..+-| ++|.++ +.-. .| ....++++-+ +.+.....
T Consensus 60 lTN~CiyDC~YCINr~s~~~pra~ftp~Eiv~ltlnfYrRnYIeGLFLSSG-vi~~-~D--yTmE~mi~va-r~LRle~~ 134 (404)
T COG4277 60 LTNFCIYDCAYCINRSSNDTPRARFTPEEIVDLTLNFYRRNYIEGLFLSSG-VIKN-PD--YTMEEMIEVA-RILRLEHK 134 (404)
T ss_pred HhhhHHHhhHHHhccccCCCcccccCHHHHHHHHHHHHHHhhhhhheeccc-cccC-cc--hHHHHHHHHH-HHHhhccc
Confidence 355699999999875443333 4678999999877676665544 444432 2211 12 1233333322 22221121
Q ss_pred --eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC----------
Q 007001 269 --TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV---------- 336 (622)
Q Consensus 269 --~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~---------- 336 (622)
..|.+- +-|..-.+. +.+++ -.+.+++|.+|...++-|+.+--.-+..++.+...++|..+
T Consensus 135 f~GYIHlK-~IPgas~~l---i~eag---lyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~ 207 (404)
T COG4277 135 FRGYIHLK-IIPGASPDL---IKEAG---LYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRK 207 (404)
T ss_pred cCcEEEEE-ecCCCCHHH---HHHHh---hhhheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhh
Confidence 233333 223222222 22222 23679999999999999999977767778888888887721
Q ss_pred ---CCCE---EEEEEEEcCCCCCHHHHHHHHHHH-HhcCCCeEEEEEeeeCCCCccccC
Q 007001 337 ---PGMQ---IATDIICGFPGETDEDFNQTVNLI-KEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 337 ---pgi~---i~td~IvGfPGETeedf~eTl~fl-~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
|.+. =+|-+|+|-.|||++++...-+.+ ..+.+.++++..|+|.|+||+--.
T Consensus 208 r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~ 266 (404)
T COG4277 208 RHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPD 266 (404)
T ss_pred ccCccccCCCCceEEEEecCCCchHHHHHHHHHHhhccceeEEEeecccccCCCCCCcc
Confidence 3332 358999999999999998777665 567899999999999999998543
No 142
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.21 E-value=0.00016 Score=79.72 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=115.2
Q ss_pred ccEEEEE-eCCCCCCCCCCcccCccCC-----CcCCCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCcCCCHHH
Q 007001 184 KFVEILP-INVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPI 254 (622)
Q Consensus 184 ~~~a~I~-isrGC~~~CsFC~ip~~rG-----~~rsr~~e~Iv~Ei~~L~~~-Gvke--I~L~g~d~~~yg~d~~~~l~e 254 (622)
+....++ ++..|+.+|.||......+ .....+.+.+.+-|+.+.+. +... |.|.|+..+..+.+ .+.+
T Consensus 12 p~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~---~~~~ 88 (412)
T PRK13745 12 PLYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLS---FYKK 88 (412)
T ss_pred ceEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHH---HHHH
Confidence 3455566 5579999999998743211 12346777777777777653 5444 55667666655421 1233
Q ss_pred HHHHHHHhCCCCCceeEEEee-cCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC----CCCHHHHHHHH
Q 007001 255 LLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVV 329 (622)
Q Consensus 255 LL~~l~~~l~~~~~~~iri~~-~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR----~~t~e~~~~~I 329 (622)
+++-+.+... ...+++.. +|...+++.. .+.+...++ .|.|.+.+. +++-...++ ..+.+.+.+.+
T Consensus 89 ~~~~~~~~~~---~~~i~~~i~TNG~ll~~e~---~~~l~~~~~--~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i 159 (412)
T PRK13745 89 ALELQKKYAR---GRQIDNCIQTNGTLLTDEW---CEFFRENNF--LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGI 159 (412)
T ss_pred HHHHHHHHcC---CCceEEEEeecCEeCCHHH---HHHHHHcCe--EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHH
Confidence 3332222111 12334332 6777776543 333333343 788888865 455444432 24899999999
Q ss_pred HHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeC
Q 007001 330 DTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380 (622)
Q Consensus 330 ~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~ 380 (622)
+.++++ |+.+.+-..+. .++.++..+.++++.+++++.+++.++.|.
T Consensus 160 ~~l~~~--gi~~~i~~vv~--~~n~~~~~e~~~~~~~lg~~~~~~~p~~~~ 206 (412)
T PRK13745 160 NLLKKH--GVEWNAMAVVN--DFNADYPLDFYHFFKELDCHYIQFAPIVER 206 (412)
T ss_pred HHHHHc--CCCEEEEEEEc--CCccccHHHHHHHHHHcCCCeEEEEeccCc
Confidence 999998 88776655554 567788899999999999999999988874
No 143
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.16 E-value=7.3e-05 Score=78.46 Aligned_cols=156 Identities=15% Similarity=0.116 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 213 SYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~---~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
..+.+++++++..... .....|.|+|++.+.+. .-+.++++.+.+. +. .+.+. ++-....+. +.
T Consensus 105 ~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~----~~l~~l~~~~k~~----g~-~~~i~-TnG~~~~~~---~~ 171 (295)
T TIGR02494 105 EMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQP----EFALALLQACHER----GI-HTAVE-TSGFTPWET---IE 171 (295)
T ss_pred CCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhchH----HHHHHHHHHHHHc----CC-cEeee-CCCCCCHHH---HH
Confidence 3578888888876432 23457889887665431 1134667666542 22 33343 333222222 33
Q ss_pred HHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC-
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK- 368 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~- 368 (622)
+++.. ...+.+.+.+.+++..+.+.. .+.+.+++.++.+.+.-..+.+.+-+|-|+ .++.+++.+.++++.+++
T Consensus 172 ~ll~~---~d~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~-n~~~~ei~~l~~~~~~~~~ 246 (295)
T TIGR02494 172 KVLPY---VDLFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGF-NDSEENIEAIAAFLRKLEP 246 (295)
T ss_pred HHHhh---CCEEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCc-CCCHHHHHHHHHHHHHhcc
Confidence 33322 356678899999988877643 467889999999999822244555556565 477899999999999998
Q ss_pred -CCeEEEEEeeeCCCCccc
Q 007001 369 -FPQVHISQFYPRPGTPAA 386 (622)
Q Consensus 369 -~d~v~i~~ysP~PGTpa~ 386 (622)
+..+++.+|.|.+..+..
T Consensus 247 ~v~~v~l~~~~~~g~~~~~ 265 (295)
T TIGR02494 247 GVDEIDLLPYHRLGENKYR 265 (295)
T ss_pred CCceEEecCCCchhHHHHH
Confidence 789999999998777653
No 144
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=98.15 E-value=0.00036 Score=75.60 Aligned_cols=174 Identities=17% Similarity=0.219 Sum_probs=107.4
Q ss_pred EEEeCCCCCCCCCCcccCccCC-C----cCCCCHHHHHHHHHHHHHC--CCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 188 ILPINVGCLGACTYCKTKHARG-H----LGSYTVESLVGRVRTVIAD--GVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG-~----~rsr~~e~Iv~Ei~~L~~~--GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
.+.++.+|+.+|.||..+.... . ....+.+.+..-++.+.+. +...|.|+|+.......+ .+.++++.+.
T Consensus 8 ~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~---~~~~~~~~~~ 84 (370)
T PRK13758 8 IKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLE---FFEELMELQR 84 (370)
T ss_pred EecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChH---HHHHHHHHHH
Confidence 3445689999999998764211 1 1234555555555555553 455788988766654321 1345555554
Q ss_pred HhCCCCCceeEEEe-ecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC----CCCHHHHHHHHHHHHHh
Q 007001 261 AELPPDGSTMLRIG-MTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----EYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 261 ~~l~~~~~~~iri~-~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR----~~t~e~~~~~I~~lr~~ 335 (622)
+. .. ....++++ .+|-..+++.. .+.+...+ . .+.|.+.+. +++-..+++ +.+.+.+.+.++.+++.
T Consensus 85 ~~-~~-~~~~~~~~i~TNG~ll~~~~---~~~l~~~~-~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~ 156 (370)
T PRK13758 85 KH-NY-KNLKIYNSLQTNGTLIDESW---AKFLSENK-F-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKY 156 (370)
T ss_pred Hh-cc-CCCeEEEEEEecCEecCHHH---HHHHHHcC-c-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHh
Confidence 32 10 11222222 25666666543 22333333 2 788888886 555555542 46889999999999998
Q ss_pred CCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 007001 336 VPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 376 (622)
Q Consensus 336 ~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ 376 (622)
++.+..-+++. ..+.+++.+.++++.+++++.+.+.+
T Consensus 157 --~~~~~i~~~v~--~~n~~~l~~i~~~~~~~g~~~~~~~~ 193 (370)
T PRK13758 157 --KVEFNILCVVT--SNTARHVNKIYKYFKEKDFKFLQFIN 193 (370)
T ss_pred --CCCceEEEEec--cccccCHHHHHHHHHHcCCCeEeeee
Confidence 77766666665 35678899999999999998776654
No 145
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=98.04 E-value=6e-05 Score=78.87 Aligned_cols=171 Identities=16% Similarity=0.141 Sum_probs=120.4
Q ss_pred CCCCHHHHHHHHHHHHHCCC----cEEEEeecCCCCCCCCcCCC-HHHHHHHHHHh----------CC---CCCceeEEE
Q 007001 212 GSYTVESLVGRVRTVIADGV----KEVWLSSEDTGAYGRDIGVN-LPILLNAIVAE----------LP---PDGSTMLRI 273 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~Gv----keI~L~g~d~~~yg~d~~~~-l~eLL~~l~~~----------l~---~~~~~~iri 273 (622)
|.-|.++--..+++|...|. -|+++.|+.|.+...+.... +..|-.++.-. .. ...-..+.+
T Consensus 148 RYdP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTI 227 (554)
T KOG2535|consen 148 RYDPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITI 227 (554)
T ss_pred hcCHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEe
Confidence 34456777777888887663 36777787777665432111 11122222110 00 001123555
Q ss_pred eecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCC
Q 007001 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGET 353 (622)
Q Consensus 274 ~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGET 353 (622)
. +.|++-...- +.+|+..+ |.++.||+||.-+.|-+.-|||||+..+-+.+...+++ |..+.+++|-.+|.-.
T Consensus 228 E-TRPDyC~~~H--l~~ML~YG--CTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDa--G~KvV~HMMPdLPNVg 300 (554)
T KOG2535|consen 228 E-TRPDYCLKRH--LSDMLTYG--CTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDA--GFKVVAHMMPDLPNVG 300 (554)
T ss_pred e-cCcccchhhh--HHHHHhcC--CceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhcc--CceeehhhCCCCCCCc
Confidence 4 6788665522 45566554 99999999999999999999999999999999999999 9999999999999854
Q ss_pred -HHHHHHHHHHHHhc--CCCeEEEEEeeeCCCCccccCC
Q 007001 354 -DEDFNQTVNLIKEY--KFPQVHISQFYPRPGTPAARMK 389 (622)
Q Consensus 354 -eedf~eTl~fl~el--~~d~v~i~~ysP~PGTpa~~~~ 389 (622)
+.|+++..++.+.- +.|-+.+++--...||-+|.++
T Consensus 301 ~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELW 339 (554)
T KOG2535|consen 301 MERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELW 339 (554)
T ss_pred hhhhHHHHHHHhcCcCcCCCcceecceEEEecccHHHHH
Confidence 45677777777654 4588999999999999999876
No 146
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=98.03 E-value=0.00043 Score=70.83 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=90.8
Q ss_pred EEEEeCCCCCCCCCCcccCccC-----CCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~r-----G~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
.||. ..|||.+|.||..+... +..+..+.++++++++.+...|++.|.|+|++...+ ..+.+|++.+.+
T Consensus 25 ~FvR-~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~-----~~l~~li~~l~~ 98 (238)
T TIGR03365 25 MFVR-TGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSGGNPALQ-----KPLGELIDLGKA 98 (238)
T ss_pred EEEE-eCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeCCchhhh-----HhHHHHHHHHHH
Confidence 3444 45999999999987532 123457999999999988767889999999877665 257888888865
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i 341 (622)
. + ..+.+. +|.....+. + .. +.++.+.+-..+. +.....+...++++.+++ +...
T Consensus 99 ~----g-~~v~le-TNGtl~~~~---l----~~---~d~v~vs~K~~~s------g~~~~~~~~~~~ik~l~~---~~~~ 153 (238)
T TIGR03365 99 K----G-YRFALE-TQGSVWQDW---F----RD---LDDLTLSPKPPSS------GMETDWQALDDCIERLDD---GPQT 153 (238)
T ss_pred C----C-CCEEEE-CCCCCcHHH---H----hh---CCEEEEeCCCCCC------CCCCcHHHHHHHHHHhhh---cCce
Confidence 2 2 345554 555433321 1 11 2355555554333 111235666677777765 3456
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
..-|+++ ++.|++...++.....
T Consensus 154 ~vK~Vv~----~~~d~~~a~~~~~~~~ 176 (238)
T TIGR03365 154 SLKVVVF----DDADYAYAKEVHARYP 176 (238)
T ss_pred EEEEEEC----CcccHHHHHHHHHhcC
Confidence 6677777 2333555555555443
No 147
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.00 E-value=0.0005 Score=73.13 Aligned_cols=185 Identities=19% Similarity=0.275 Sum_probs=131.9
Q ss_pred CCccEEEEEeCCCCCCCCCCcccCccCCC-cCCCCHHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 007001 182 RNKFVEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 182 ~~~~~a~I~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~Ei~~L~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l 259 (622)
+++.++.+..+.+|+-.|.||.-..+-|. -..++.+++-.-+.++.+. -++++.|+|+|...... ..|..|+++|
T Consensus 108 rY~drvLll~t~~C~vyCRyCfRr~~~~~~~~~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~---~~L~~ll~~L 184 (369)
T COG1509 108 RYPDRVLLLVTGVCAVYCRYCFRRRFVGQDNQGFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSD---KKLEWLLKRL 184 (369)
T ss_pred ecCCeEEEEecCcccceeeecccccccccccccCCHHHHHHHHHHHHcCchhheEEecCCCccccCH---HHHHHHHHHH
Confidence 44667899999999999999976655443 2335888888888887765 68999999998876532 3688899999
Q ss_pred HHhCCCCCceeEEEeec----CCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh
Q 007001 260 VAELPPDGSTMLRIGMT----NPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~----~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
.+ ++ -...+||++- .|..|++. |.+++.....-.++..=+.|..+ . .++..+++++++++
T Consensus 185 ~~-Ip--Hv~iiRi~TR~pvv~P~RIt~~---L~~~l~~~~~~v~~~tH~NHp~E---------i-t~e~~~A~~~L~~a 248 (369)
T COG1509 185 RA-IP--HVKIIRIGTRLPVVLPQRITDE---LCEILGKSRKPVWLVTHFNHPNE---------I-TPEAREACAKLRDA 248 (369)
T ss_pred hc-CC--ceeEEEeecccceechhhccHH---HHHHHhccCceEEEEcccCChhh---------c-CHHHHHHHHHHHHc
Confidence 76 66 6789999963 55556644 44444442212233333333332 1 24689999999999
Q ss_pred CCCCEEE--EEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC
Q 007001 336 VPGMQIA--TDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 336 ~pgi~i~--td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~ 388 (622)
|+.+. +=++=|. .++.+.+.+.++-+...++.--++|..-+-+|+.-+..
T Consensus 249 --Gv~l~NQsVLLrGV-ND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~hfr~ 300 (369)
T COG1509 249 --GVPLLNQSVLLRGV-NDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAAHFRV 300 (369)
T ss_pred --Cceeecchheeccc-CCCHHHHHHHHHHHHHcCCcceEEeccCccCCccceec
Confidence 97654 3355565 88999999999999999887777888888888876543
No 148
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=97.95 E-value=0.00046 Score=75.19 Aligned_cols=198 Identities=13% Similarity=0.104 Sum_probs=121.9
Q ss_pred CCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHC-CCcE--EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeE
Q 007001 195 CLGACTYCKTKHARGHLGSYTVESLVGRVRTVIAD-GVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML 271 (622)
Q Consensus 195 C~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~-Gvke--I~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~i 271 (622)
|+.+|.||-.+......+..+.+.+.+-++.+.+. +... |.+.|+.....|.+ +-+.+..+.+... ...++
T Consensus 18 CNL~C~YC~~~~~~~~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~----f~~~~~~l~~k~~--~~~~i 91 (378)
T COG0641 18 CNLDCKYCFYLEKESLQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLD----FYRKAVALQQKYA--NGKTI 91 (378)
T ss_pred cCCCCCeeCcccCCCCCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchHH----HHHHHHHHHHHHh--cCCee
Confidence 99999999876533222345666665566666654 4455 66666666655543 3444444444333 24555
Q ss_pred EEee-cCCcchhHHHHHHHHHHhCCCCceeecccCCC---CCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE
Q 007001 272 RIGM-TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQS---GSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC 347 (622)
Q Consensus 272 ri~~-~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQS---gsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~Iv 347 (622)
..++ +|...+++.. .++++...+ .|.|.+.- .+|.....-+-.-|.+.+.+.++.+++. ++.+.+...
T Consensus 92 ~~siqTNg~LL~~e~---~e~l~~~~~--~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~--~v~~~~~~v- 163 (378)
T COG0641 92 SNALQTNGTLLNDEW---AEFLAEHDF--LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAH--GVDFNTLTV- 163 (378)
T ss_pred EEEEEEcccccCHHH---HHHHHhcCc--eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHc--CCcEEEEEE-
Confidence 5443 4666666544 445544443 55555533 3333322222345899999999999998 887766666
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHH
Q 007001 348 GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVF 407 (622)
Q Consensus 348 GfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~ 407 (622)
..-++.+...+.++|+.+.+...+.+.+..+..++...... +++.+.-.+.+..+.+..
T Consensus 164 -v~~~n~~~~~ei~~~l~~~g~~~i~fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~ 223 (378)
T COG0641 164 -VNRQNVLHPEEIYHFLKSEGSKFIQFIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEW 223 (378)
T ss_pred -EchhHhhCHHHHHHHHHHcccceEEEEecccCCCCCccccccccCHHHHHHHHHHHHHHH
Confidence 56899999999999999999888888666666555421122 566665555544444443
No 149
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.00034 Score=72.55 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=104.5
Q ss_pred cEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHH-HHH--HCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 185 FVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVR-TVI--ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~-~L~--~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
...++-...|||++|.||.-+.....-+..+.+++..|+- ... ..+..-|.++|.+.+..- .-+.++++...+
T Consensus 35 ~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~gvt~SGGEP~~q~----e~~~~~~~~ake 110 (260)
T COG1180 35 SIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFYSESGGGVTFSGGEPTLQA----EFALDLLRAAKE 110 (260)
T ss_pred cEEEEEEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhhhcCCCCEEEEECCcchhhH----HHHHHHHHHHHH
Confidence 3567788999999999999886543212334444443322 221 236678999886654431 234566666654
Q ss_pred hCCCCCceeEEEeecCCcchhH-HHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC-
Q 007001 262 ELPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM- 339 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi- 339 (622)
. + ....+. ++- ++.. ..+++... +..+.+-+=..+++..+..- +.+.+.+++.++.+.+. |+
T Consensus 111 ~----G-l~~~l~-TnG-~~~~~~~~~l~~~------~D~v~~DlK~~~~~~y~~~t-g~~~~~vl~~~~~l~~~--g~~ 174 (260)
T COG1180 111 R----G-LHVALD-TNG-FLPPEALEELLPL------LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADL--GVH 174 (260)
T ss_pred C----C-CcEEEE-cCC-CCCHHHHHHHHhh------cCeEEEeeccCChHHHHHHh-CCCcHHHHHHHHHHHcC--CCe
Confidence 2 2 222332 221 1112 11223222 45777888888988655443 33448999999999997 65
Q ss_pred -EEEEEEEEcCCCCCHHHHHHHHHHHHhcC-CCeEEEEEeee
Q 007001 340 -QIATDIICGFPGETDEDFNQTVNLIKEYK-FPQVHISQFYP 379 (622)
Q Consensus 340 -~i~td~IvGfPGETeedf~eTl~fl~el~-~d~v~i~~ysP 379 (622)
.+++-+|=|+ .+.++++++..+|+.++. ...+++.+|.|
T Consensus 175 ve~r~lviPg~-~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp 215 (260)
T COG1180 175 VEIRTLVIPGY-NDDEEEIRELAEFIADLGPEIPIHLLRFHP 215 (260)
T ss_pred EEEEEEEECCC-CCCHHHHHHHHHHHHhcCCcccEEEecccc
Confidence 4555566555 678999999999999753 33455555443
No 150
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=97.74 E-value=0.00087 Score=72.56 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=121.6
Q ss_pred CCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCc-----EEEEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEE
Q 007001 199 CTYCKTKHARGHLGSYTVESLVGRVRTVIADGVK-----EVWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLR 272 (622)
Q Consensus 199 CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~Gvk-----eI~L~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~ir 272 (622)
|.||.....--.-...++..|.+|... +.|+. .+... +.|++.| .++.++.++..... .+.++|
T Consensus 44 C~~cy~~v~~~~~~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~d~~c~-----p~le~~~~r~~~~~---~d~~~r 113 (414)
T COG1625 44 CDDCYLSVNELDTGFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNGDTFCY-----PDLEPRGRRARLYY---KDDDIR 113 (414)
T ss_pred ccceeeEEecccCCCCCHhHhhccccc--ccccccccccceeecCCCCcccC-----cchhhhhhHHHhhc---CCccce
Confidence 999976532111245678888888753 12222 22222 3344444 35677777776543 366788
Q ss_pred EeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Q 007001 273 IGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352 (622)
Q Consensus 273 i~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGE 352 (622)
++++.-..+...- ....+... + ..-+.+.++|.++++.++|-|....++.++.++++.++ .+.+.+++++ .||=
T Consensus 114 L~~tsG~~~~lt~-~~~~i~~~-g-vdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~--~~~v~a~iVl-~PGv 187 (414)
T COG1625 114 LSFTSGSGFTLTN-RAERIIDA-G-VDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAER--CIEVHAQIVL-CPGV 187 (414)
T ss_pred eeeeeccceeccc-hHHHHHHc-C-CCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHh--hhheeeEEEE-cCCc
Confidence 8887655443210 12223322 3 68899999999999999999999999999999999999 9999999998 5998
Q ss_pred C-HHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc
Q 007001 353 T-DEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387 (622)
Q Consensus 353 T-eedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~ 387 (622)
+ -+++.+|++-+.+.+...+.++.+.|.=.|....
T Consensus 188 Ndge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n~ 223 (414)
T COG1625 188 NDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYNR 223 (414)
T ss_pred CcHHHHHHHHHHHHHhCcCceeEEEeecceeeecCC
Confidence 8 8999999999999999888888766765554433
No 151
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.26 E-value=0.007 Score=66.67 Aligned_cols=109 Identities=14% Similarity=0.207 Sum_probs=80.4
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCH-HHHHHHHHHHHhcC---CCeEE
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETD-EDFNQTVNLIKEYK---FPQVH 373 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETe-edf~eTl~fl~el~---~d~v~ 373 (622)
..-+.+.+.+.+++..+.|-+.-..+++++.++++.++ ||.+++.+++ .||=++ +++++|++.+.+++ ...+.
T Consensus 139 lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~--~I~~h~qiVl-cPGiNDg~~L~~Ti~dL~~~~~~~~P~v~ 215 (433)
T TIGR03279 139 LSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQER--RLQLHAQVVV-CPGINDGKHLERTLRDLAQFHDGDWPTVL 215 (433)
T ss_pred CCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHc--CCeEEEEEEE-cCCcCCHHHHHHHHHHHHhhcccCCCcee
Confidence 56788999999999998887766899999999999999 9999999888 599887 79999999999982 23333
Q ss_pred EEEeeeCCCCcc----ccCCCCCHHHHHHHHHHHHHHHHH
Q 007001 374 ISQFYPRPGTPA----ARMKKVPSAVVKKRSRELTSVFEA 409 (622)
Q Consensus 374 i~~ysP~PGTpa----~~~~~v~~~~~k~R~~~L~~l~~~ 409 (622)
--.-.|.==|.. +.+..+..+..++-.+.+..+++.
T Consensus 216 S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ie~~q~~ 255 (433)
T TIGR03279 216 SVAVVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQTQ 255 (433)
T ss_pred EEEEEccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHH
Confidence 333334333433 233346666666666666666554
No 152
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=97.20 E-value=0.0022 Score=58.90 Aligned_cols=68 Identities=18% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCCcEEEEec----hHHHHHHHHHHhcCC--CcEEEEccccccchhh--hcccccE-EEcCCchHHHHHHHHHHhcCC
Q 007001 94 EEADIWLINT----QSAMDTLIAKCKSAK--KPLVVAGCVPQGSRDL--KELEGVS-IVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 94 ~~ADlviINT----~~~~~~ii~~~k~~~--~~VVVgGC~aq~~pe~--~~~~~d~-VvG~~~~~~l~ell~~~~~g~ 162 (622)
.++|+|.+++ ...+.++++.+|+.+ .+||+||.+++..|+. .....|. +.|+++ ..++++++....|.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE-~~~~~l~~~l~~g~ 114 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE-ETFLKLLEELEEGE 114 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH-HHHHHHHHHHHcCC
Confidence 5789999988 446667788888766 5899999999999873 3345687 556665 78999998876553
No 153
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=97.13 E-value=0.0025 Score=57.40 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC--CcEEEEccccccchh
Q 007001 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK--KPLVVAGCVPQGSRD 133 (622)
Q Consensus 75 se~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~--~~VVVgGC~aq~~pe 133 (622)
..++++.|++.||++.-- ...+|+|++++ .....++++.+|+.+ .+|++||.+++..|+
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~ 96 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHATADPE 96 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSGHHHH
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchhcChH
Confidence 456677777777765211 24689999987 445667788887764 479999999999987
Q ss_pred -h-hc-ccccE-EEcCCchHHHHHHH
Q 007001 134 -L-KE-LEGVS-IVGVQQIDRVVEVV 155 (622)
Q Consensus 134 -~-~~-~~~d~-VvG~~~~~~l~ell 155 (622)
. .. ...|+ ++|+++ ..+++++
T Consensus 97 ~~l~~~~~~D~vv~GegE-~~~~~l~ 121 (121)
T PF02310_consen 97 EILREYPGIDYVVRGEGE-EAFPELL 121 (121)
T ss_dssp HHHHHHHTSEEEEEETTS-SHHHH--
T ss_pred HHhccCcCcceecCCChH-HhhcccC
Confidence 3 33 45575 788887 5676654
No 154
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=96.98 E-value=0.034 Score=56.06 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHHH---CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIA---DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~---~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 288 (622)
+..++++|+++++.-.. .+-.-|.|+|++...+. .-+.++++.+.+. +. .+.+. ++-..-.+. +
T Consensus 17 ~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~----~fl~~l~~~~k~~----gi-~~~le-TnG~~~~~~---~ 83 (213)
T PRK10076 17 RDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQA----EFATRFLQRLRLW----GV-SCAIE-TAGDAPASK---L 83 (213)
T ss_pred cccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCH----HHHHHHHHHHHHc----CC-CEEEE-CCCCCCHHH---H
Confidence 34799999999886432 23356889887766542 1245677776542 22 33343 221111122 3
Q ss_pred HHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 289 ~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
..++.. +..+.+-+=+.+++..+..- |.+.+.+++.++.+.+.-..+.+++-+|-|+ ..+++++++..+|+.+++
T Consensus 84 ~~l~~~---~D~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~-nd~~e~i~~ia~~l~~l~ 158 (213)
T PRK10076 84 LPLAKL---CDEVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGF-TLSRENMQQALDVLIPLG 158 (213)
T ss_pred HHHHHh---cCEEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCC-CCCHHHHHHHHHHHHHcC
Confidence 333322 45677778888888877664 3567899999999999833467788888887 678999999999999998
Q ss_pred CCeEEEEEeeeCCC
Q 007001 369 FPQVHISQFYPRPG 382 (622)
Q Consensus 369 ~d~v~i~~ysP~PG 382 (622)
+..+++.+|.|+--
T Consensus 159 ~~~~~llpyh~~g~ 172 (213)
T PRK10076 159 IKQIHLLPFHQYGE 172 (213)
T ss_pred CceEEEecCCccch
Confidence 88999999988643
No 155
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=96.95 E-value=0.0088 Score=62.06 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=103.7
Q ss_pred eCCCCCCCCCCcccCcc--CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCc
Q 007001 191 INVGCLGACTYCKTKHA--RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS 268 (622)
Q Consensus 191 isrGC~~~CsFC~ip~~--rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~ 268 (622)
+=.||+++|-||.-.-. .|--+...++++.+-+..+.+.|++.|.|+|+|.+- .++-+|+.+.-.......
T Consensus 124 FFsgCnfrCVfCQNwdISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp-------~lp~Ile~l~~~~~~iPv 196 (335)
T COG1313 124 FFSGCNFRCVFCQNWDISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP-------HLPFILEALRYASENIPV 196 (335)
T ss_pred EecCcceEEEEecCccccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCC-------chHHHHHHHHHHhcCCCE
Confidence 34699999999986522 234456788998888888889999999999876543 355666655432210023
Q ss_pred eeEEEeecCCcchhHHHHHHHHHHhCCCCceeeccc-CCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEEEEE
Q 007001 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVP-VQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDII 346 (622)
Q Consensus 269 ~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IG-lQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pgi~i~td~I 346 (622)
.|-.-+|..+. ..+++. + +--+.+| +-=|+|+--.+.-+ +.-.+-..+.+..+.+.+.|+-+.--+
T Consensus 197 vwNSnmY~s~E--------~l~lL~--g-vVDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLV- 264 (335)
T COG1313 197 VWNSNMYMSEE--------TLKLLD--G-VVDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLV- 264 (335)
T ss_pred EEecCCccCHH--------HHHHhh--c-cceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEe-
Confidence 34333332221 222321 1 1122222 33466666544433 444566677777777775556555444
Q ss_pred EcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee-eCCCCccccCCCC
Q 007001 347 CGFPGETDEDFNQTVNLIKEYKFPQVHISQFY-PRPGTPAARMKKV 391 (622)
Q Consensus 347 vGfPGETeedf~eTl~fl~el~~d~v~i~~ys-P~PGTpa~~~~~v 391 (622)
+||--+.--...++|+.+.-.+.+.++... -+|--.+.+++.+
T Consensus 265 --lPghlecCTkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI 308 (335)
T COG1313 265 --LPGHLECCTKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEI 308 (335)
T ss_pred --cCCchhhccHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhh
Confidence 466444435668899988876555554332 2344555566543
No 156
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0038 Score=62.90 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=47.7
Q ss_pred CCCCCCCCCcccCccCC-----CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 193 VGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 193 rGC~~~CsFC~ip~~rG-----~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
-|||.+|.||..++++. .+...+.++|+++++.+. .+.+.|.|+|++.... ..+.+|++.+.+
T Consensus 30 ~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~-----~~l~~Ll~~l~~ 97 (212)
T COG0602 30 AGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQ-----PNLLELLELLKR 97 (212)
T ss_pred CCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCc-----ccHHHHHHHHHh
Confidence 39999999999886643 467778999999998763 3445899999877332 257888888865
No 157
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.37 E-value=0.038 Score=51.58 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=69.2
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC-
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK- 118 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~- 118 (622)
.++.+-|.|.-.--.=...++..|+..||++++. .++||+|+|++ .+.+..+++.+++.+
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~ 82 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGR 82 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCC
Confidence 3677777777655556678889999999998764 46799999998 455677888888765
Q ss_pred --CcEEEEccccccc-hhhhcccccEEEcCCchHHHHHHHHH
Q 007001 119 --KPLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEE 157 (622)
Q Consensus 119 --~~VVVgGC~aq~~-pe~~~~~~d~VvG~~~~~~l~ell~~ 157 (622)
.+|++||-.+... .++.++..|.+++.+. .+.+++..
T Consensus 83 ~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt--~~~~i~~~ 122 (132)
T TIGR00640 83 PDILVVVGGVIPPQDFDELKEMGVAEIFGPGT--PIPESAIF 122 (132)
T ss_pred CCCEEEEeCCCChHhHHHHHHCCCCEEECCCC--CHHHHHHH
Confidence 4688998665432 3355667788888875 34454443
No 158
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=96.31 E-value=0.012 Score=54.18 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=39.5
Q ss_pred EEeCCCCCCCCCCcccCccCCC-cCCCCHHHHHHHH-HHHHHCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHh
Q 007001 189 LPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRV-RTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 189 I~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~Ei-~~L~~~GvkeI~L~g~d~~~y-g~d~~~~l~eLL~~l~~~ 262 (622)
+..+.||+.+|.||..+..... ....-..+.++++ +.+.+.+...|.|+|++...+ .. ..+.++++.+.+.
T Consensus 9 ~~~t~~Cnl~C~yC~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~---~~l~~i~~~~k~~ 82 (139)
T PF13353_consen 9 VLFTNGCNLRCKYCFNSEIWKFKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLHENY---DELLEILKYIKEK 82 (139)
T ss_dssp EEEEC--SB--TT-TTCCCS-TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSH---HHHHHHHHHHHHT
T ss_pred EEEcCcccccCcCcCCcccCcccccccccchhhhhhhhHHhcCCceEEEEcCCCeeeeccH---hHHHHHHHHHHHh
Confidence 3448889999999987654431 1111235555554 444457899999999776651 11 3467788777764
No 159
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=96.30 E-value=0.0092 Score=56.71 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=50.0
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC--cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 186 VEILPINVGCLGACTYCKTKHARGH--LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~--~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
.+.+-.-.|||.+|.||..+..... -...+.++++++++.+. ..+..|.|+|++ ..+ ..+.+|++.+.+
T Consensus 16 ~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~-~~~~gVt~SGGE-l~~-----~~l~~ll~~lk~ 86 (147)
T TIGR02826 16 YSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYR-SLISCVLFLGGE-WNR-----EALLSLLKIFKE 86 (147)
T ss_pred EEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhC-CCCCEEEEechh-cCH-----HHHHHHHHHHHH
Confidence 3455566799999999998865322 34578999999988864 345789999987 221 246788888765
No 160
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=96.02 E-value=0.025 Score=50.89 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=31.0
Q ss_pred eCCCCCCCCCCcccCccC--CCcCCCCHHHHHHHHHHHHHCCC--cEEEEeecCCCCC
Q 007001 191 INVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIADGV--KEVWLSSEDTGAY 244 (622)
Q Consensus 191 isrGC~~~CsFC~ip~~r--G~~rsr~~e~Iv~Ei~~L~~~Gv--keI~L~g~d~~~y 244 (622)
++.+|+.+|.||...... ......+.+++.+.++.+...+. ..|.|+|++.+.+
T Consensus 4 ~t~~Cnl~C~~C~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~ 61 (119)
T PF13394_consen 4 RTSGCNLRCSYCYNKSSWSPKKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLY 61 (119)
T ss_dssp --S--S---TTTS-TTTSST-GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGS
T ss_pred ccCCcCCCCccCCcCccCCCccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccc
Confidence 478999999999975422 23566788888888888877776 5699998776643
No 161
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=95.94 E-value=0.078 Score=56.02 Aligned_cols=163 Identities=16% Similarity=0.245 Sum_probs=101.6
Q ss_pred EEEeCCCCCCCCCCcccCccC-CC----cCC---CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHH
Q 007001 188 ILPINVGCLGACTYCKTKHAR-GH----LGS---YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAI 259 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~r-G~----~rs---r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l 259 (622)
.|-++-=||.+|-||-+...| |+ ..- .+.++|+.|+...-+.| +-++|.|...- -.+..+.++.+
T Consensus 31 VlFvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~G---asiTGGdPl~~----ieR~~~~ir~L 103 (353)
T COG2108 31 VLFVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALG---ASITGGDPLLE----IERTVEYIRLL 103 (353)
T ss_pred EEEEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhcccc---ccccCCChHHH----HHHHHHHHHHH
Confidence 566777799999999876433 32 112 34688888887765555 55776554321 12446777777
Q ss_pred HHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCC-ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 260 VAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV-YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 260 ~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v-~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
.+++. ....+.+ |++....++.. +.++. .+++ =-++|.+ ..+.. ..+.+.+.+..+++. |
T Consensus 104 K~efG--~~fHiHL-YT~g~~~~~e~--l~~L~-eAGLDEIRfHp~--~~~~~---------~~e~~i~~l~~A~~~--g 164 (353)
T COG2108 104 KDEFG--EDFHIHL-YTTGILATEEA--LKALA-EAGLDEIRFHPP--RPGSK---------SSEKYIENLKIAKKY--G 164 (353)
T ss_pred HHhhc--cceeEEE-eeccccCCHHH--HHHHH-hCCCCeEEecCC--Ccccc---------ccHHHHHHHHHHHHh--C
Confidence 77664 4455665 46555555533 33333 2221 1367776 22211 235788899999998 7
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 378 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ys 378 (622)
+.+..- |-..||+. +.+.+.++++.+.+.+.++++-+-
T Consensus 165 ~dvG~E-iPaipg~e-~~i~e~~~~~~~~~~~FlNiNELE 202 (353)
T COG2108 165 MDVGVE-IPAIPGEE-EAILEFAKALDENGLDFLNINELE 202 (353)
T ss_pred ccceee-cCCCcchH-HHHHHHHHHHHhcccceeeeeeee
Confidence 766544 34567754 457788999999999999997654
No 162
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.72 E-value=0.055 Score=50.24 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC---CcEEEEcccc---cc
Q 007001 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK---KPLVVAGCVP---QG 130 (622)
Q Consensus 76 e~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~---~~VVVgGC~a---q~ 130 (622)
..++..|+++||++++- .++||+|.+++ ...+.++++.+++.+ .+|++||-.+ +.
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d 96 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQD 96 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhh
Confidence 35677899999998753 46799999988 566777777777665 4789999643 22
Q ss_pred ch----hhhcccccEEEcCCchHHHHHHHHH
Q 007001 131 SR----DLKELEGVSIVGVQQIDRVVEVVEE 157 (622)
Q Consensus 131 ~p----e~~~~~~d~VvG~~~~~~l~ell~~ 157 (622)
.+ ++.++..|.++|++. .+.+++++
T Consensus 97 ~~~~~~~L~~~Gv~~vf~pgt--~~~~i~~~ 125 (128)
T cd02072 97 FEDVEKRFKEMGFDRVFAPGT--PPEEAIAD 125 (128)
T ss_pred hHHHHHHHHHcCCCEEECcCC--CHHHHHHH
Confidence 22 245666788999886 45555554
No 163
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.61 E-value=0.095 Score=49.10 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC---CcEEEEccc--ccc-
Q 007001 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK---KPLVVAGCV--PQG- 130 (622)
Q Consensus 76 e~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~---~~VVVgGC~--aq~- 130 (622)
..++..|+++||++++- .++||+|.+++ ...+.++++++++.| ++|++||-. +..
T Consensus 19 ~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d 98 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQD 98 (134)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhh
Confidence 46788999999998763 46799999988 556777888888775 457799943 322
Q ss_pred ch----hhhcccccEEEcCCc-hHHHHHHHHH
Q 007001 131 SR----DLKELEGVSIVGVQQ-IDRVVEVVEE 157 (622)
Q Consensus 131 ~p----e~~~~~~d~VvG~~~-~~~l~ell~~ 157 (622)
.+ ++.++..|.++|++. .+.+.+.|..
T Consensus 99 ~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 99 FPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred hHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 22 245566788888764 4555555554
No 164
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.45 E-value=0.91 Score=46.47 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=101.0
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
...++.++.++-++.|.+.|+..|.+.+......- .......++++.+.+..+ ..++.. ..... . +.+..
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~---~~~~~~-l~~~~--~---~~i~~ 82 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVP---NVKLQA-LVRNR--E---KGIER 82 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccC---CcEEEE-EccCc--h---hhHHH
Confidence 45669999999999999999999999875433111 112355788888876432 223322 12221 1 22333
Q ss_pred HHhCCCCceeecccCCCCCHHH-HHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-CCCHHHHHHHHHHHHh
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAV-LSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGFP-GETDEDFNQTVNLIKE 366 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~v-Lk~MnR~~--t~e~~~~~I~~lr~~~pgi~i~td~IvGfP-GETeedf~eTl~fl~e 366 (622)
+...+ ...+++.+ ++++.- ....+|+. ..+...+.++.+++. |+.+...++.-+. ..+.+.+.+.++.+.+
T Consensus 83 a~~~g--~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 83 ALEAG--VDEVRIFD-SASETHSRKNLNKSREEDLENAEEAIEAAKEA--GLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred HHhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 33332 57788888 455532 34345553 678899999999999 9999999876663 4899999999999999
Q ss_pred cCCCeEEEE
Q 007001 367 YKFPQVHIS 375 (622)
Q Consensus 367 l~~d~v~i~ 375 (622)
++.+.+.+.
T Consensus 158 ~g~~~i~l~ 166 (265)
T cd03174 158 AGADEISLK 166 (265)
T ss_pred cCCCEEEec
Confidence 999887754
No 165
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=95.24 E-value=0.69 Score=44.99 Aligned_cols=154 Identities=18% Similarity=0.269 Sum_probs=90.3
Q ss_pred CCCCCCCCCCcccCccCC-----CcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 192 NVGCLGACTYCKTKHARG-----HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 192 srGC~~~CsFC~ip~~rG-----~~rsr~~e~Iv~Ei~~L~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
.-||+..|.||-.. .+. .....+|++|.+.+.++.+ .|..-+.+.|..... ++ +.+.++++-+ +
T Consensus 48 ~VGCnl~CayCw~y-~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l-~~---EHvlevIeLl----~- 117 (228)
T COG5014 48 TVGCNLLCAYCWNY-FRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPIL-GR---EHVLEVIELL----V- 117 (228)
T ss_pred ccccceeeHHhhhh-hhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCccc-cH---HHHHHHHHhc----c-
Confidence 57999999999762 221 2345689999999877765 598988888764432 33 2234444333 2
Q ss_pred CCceeEEEeecCCcch--hHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCCCCE
Q 007001 266 DGSTMLRIGMTNPPFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPGMQ 340 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i--~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR---~~t~e~~~~~I~~lr~~~pgi~ 340 (622)
+ ...-+. +|-..+ +..+ ..++..+..+ .+-+.+--.+++...++.- .+ ..--+++++.+.+. |+.
T Consensus 118 -~-~tFvlE-TNG~~~g~drsl--v~el~nr~nv--~vRVsvKG~dpesF~kIT~asp~~-F~~QL~aLr~L~~~--g~r 187 (228)
T COG5014 118 -N-NTFVLE-TNGLMFGFDRSL--VDELVNRLNV--LVRVSVKGWDPESFEKITGASPEY-FRYQLKALRHLHGK--GHR 187 (228)
T ss_pred -C-ceEEEE-eCCeEEecCHHH--HHHHhcCCce--EEEEEecCCCHHHHHHHhcCChHH-HHHHHHHHHHHHhc--Cce
Confidence 1 111122 333222 3333 3344555554 5667777888888866532 12 34446677777777 888
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
+..-++.+|-. ++...+....+-++
T Consensus 188 f~pA~~~~f~~--Ed~~k~Lak~Lgeh 212 (228)
T COG5014 188 FWPAVVYDFFR--EDGLKELAKRLGEH 212 (228)
T ss_pred eeehhhhccch--hhhHHHHHHHhccC
Confidence 88899999832 22223344444444
No 166
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.01 E-value=0.3 Score=45.80 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=65.7
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC--
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK-- 118 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~-- 118 (622)
++-+-|.|--....=--.++-.|+..||+++.- ..+||+|.+++ ...++++++++++.+
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~ 84 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLG 84 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCC
Confidence 344444444444444557778899999998653 46799999988 566777888887763
Q ss_pred -CcEEEEcccccc--ch-----hhhcccccEEEcC-CchHHHHHHHHHHh
Q 007001 119 -KPLVVAGCVPQG--SR-----DLKELEGVSIVGV-QQIDRVVEVVEETL 159 (622)
Q Consensus 119 -~~VVVgGC~aq~--~p-----e~~~~~~d~VvG~-~~~~~l~ell~~~~ 159 (622)
.+|++||-.+.. .+ ++.++..|.|++. ...+.+.+.|.+..
T Consensus 85 ~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 85 DILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred CCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 568999965332 22 2345556778774 55666777766543
No 167
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=94.58 E-value=0.15 Score=46.04 Aligned_cols=72 Identities=25% Similarity=0.335 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC---CcEEEEccccccchh
Q 007001 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK---KPLVVAGCVPQGSRD 133 (622)
Q Consensus 76 e~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~---~~VVVgGC~aq~~pe 133 (622)
-.++..|+..||++..- ..++|+|+|++ .....++++.+|+.+ .+|++||-+++..++
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~ 96 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFK 96 (119)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHH
Confidence 35667777888876442 45699999987 445566777777664 468999999888776
Q ss_pred -hhcccccEEEcCCc
Q 007001 134 -LKELEGVSIVGVQQ 147 (622)
Q Consensus 134 -~~~~~~d~VvG~~~ 147 (622)
..+...|.++....
T Consensus 97 ~~~~~G~D~~~~~~~ 111 (119)
T cd02067 97 FLKEIGVDAYFGPAT 111 (119)
T ss_pred HHHHcCCeEEECCHH
Confidence 45666788887765
No 168
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=94.38 E-value=0.24 Score=47.30 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=42.8
Q ss_pred CCCCCCCCCCcccCccCC--CcCCCC---HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 192 NVGCLGACTYCKTKHARG--HLGSYT---VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 192 srGC~~~CsFC~ip~~rG--~~rsr~---~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
-.|||.+|.||..|.... .-...+ +++|++++.... .+..|.|+|++...... ...+.++++.+.+.
T Consensus 22 ~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~--~~~gVt~sGGEPllq~~--~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNP--LIDGLTLSGGDPLYPRN--VEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcC--CcCeEEEeChhhCCCCC--HHHHHHHHHHHHHh
Confidence 479999999999886542 124566 555565554321 35679999987765420 02467777777654
No 169
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=93.90 E-value=0.13 Score=46.25 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCeeeCC--------------CCCCcEEEEec----hHHHHHHHHHHhcC---CCcEEEEccccccchhhh
Q 007001 77 YMAGQLSAFGYALTDN--------------SEEADIWLINT----QSAMDTLIAKCKSA---KKPLVVAGCVPQGSRDLK 135 (622)
Q Consensus 77 ~m~~~L~~~G~~~v~~--------------~~~ADlviINT----~~~~~~ii~~~k~~---~~~VVVgGC~aq~~pe~~ 135 (622)
.++..|++.||+...- ..++|+|.+++ .....+.+.++++. +.+|++||.+++..|+.
T Consensus 18 ~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t~~~~~- 96 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPTADPEE- 96 (125)
T ss_pred HHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCCccccc-
Confidence 4555566666665421 25799999998 11223334444332 46899999999999876
Q ss_pred cccccE-EEcCCchHHHHHHHH
Q 007001 136 ELEGVS-IVGVQQIDRVVEVVE 156 (622)
Q Consensus 136 ~~~~d~-VvG~~~~~~l~ell~ 156 (622)
...|. ++|+++ ..++++++
T Consensus 97 -~~~d~~~~Ge~e-~~~~~l~~ 116 (125)
T cd02065 97 -PKVDAVVIGEGE-YAGPALLE 116 (125)
T ss_pred -cccceeeeCCeE-EEccccch
Confidence 34565 677777 34666553
No 170
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=93.25 E-value=0.75 Score=43.51 Aligned_cols=97 Identities=20% Similarity=0.378 Sum_probs=66.3
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCCC
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAKK 119 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~~ 119 (622)
.+|-+-++|=----.=...++..|++.||++... .+++|+|+|++ ..-+..+++.+++.|.
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCC
Confidence 4666667773322333567889999999997643 47899999999 4445567788888874
Q ss_pred ---cEEEEccccccc-hhhhcccccEEEcCCchHHHHHHHHH
Q 007001 120 ---PLVVAGCVPQGS-RDLKELEGVSIVGVQQIDRVVEVVEE 157 (622)
Q Consensus 120 ---~VVVgGC~aq~~-pe~~~~~~d~VvG~~~~~~l~ell~~ 157 (622)
.|++||-.+... ++++++..|.+++++- .+.+.+..
T Consensus 93 ~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt--~~~~~~~~ 132 (143)
T COG2185 93 EDILVVVGGVIPPGDYQELKEMGVDRIFGPGT--PIEEALSD 132 (143)
T ss_pred cceEEeecCccCchhHHHHHHhCcceeeCCCC--CHHHHHHH
Confidence 357888877654 3466677788888864 34444443
No 171
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=93.04 E-value=0.48 Score=45.27 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCCCCCCCCcccCccCCC--cCCCC---HHHHHHHHHHHHHCCC--cEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 193 VGCLGACTYCKTKHARGH--LGSYT---VESLVGRVRTVIADGV--KEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 193 rGC~~~CsFC~ip~~rG~--~rsr~---~e~Iv~Ei~~L~~~Gv--keI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
.|||++|.||..+..... -...+ .++|++++. ..+. ..|.|+|++.... .. ...+.++++++.+..
T Consensus 24 ~GCnl~C~~C~n~~~~~~~~g~~~~~~~~~~il~~~~---~~~~~~~gvt~sGGEPl~~-~~-~~~l~~l~~~~k~~~ 96 (154)
T PRK11121 24 SGCVHQCPGCYNKSTWRLNSGHPFTKEMEDQIIADLN---DTRIKRQGLSLSGGDPLHP-QN-VPDILKLVQRVKAEC 96 (154)
T ss_pred CCCCCcCcCCCChhhccCCCCcccCHHHHHHHHHHHH---HhCCCCCcEEEECCCccch-hh-HHHHHHHHHHHHHHC
Confidence 899999999988764321 11123 334444433 3333 4688998776432 11 124566777776554
No 172
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=92.97 E-value=3.9 Score=44.42 Aligned_cols=146 Identities=14% Similarity=0.152 Sum_probs=91.0
Q ss_pred CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHH
Q 007001 210 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287 (622)
Q Consensus 210 ~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~e 287 (622)
.-.+.+.++-++-++.|.+.|++.|....- ...+... .+-.++++.+.. .. + ..+. .+-| .. ++
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~---vspk~vPqmad~~ev~~~i~~-~~--~-~~~~--~l~~--n~---~d 126 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVSSGLPVVEATSF---VSPKWVPQLADAKDVMAAVRN-LE--G-ARFP--VLTP--NL---KG 126 (347)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccccHHHHHHHHHh-cc--C-Ccee--EEcC--CH---HH
Confidence 346789999999999999999999987631 1111000 133566777754 32 2 2221 1222 11 22
Q ss_pred HHHHHhCCCCceeecccCCCCCHHHHHh-hcCC--CCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCC---HHHHHH
Q 007001 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGET---DEDFNQ 359 (622)
Q Consensus 288 l~~l~~~~~v~~~l~IGlQSgsd~vLk~-MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~--IvGfPGET---eedf~e 359 (622)
+...+..+ +..+++.+ |.||..+++ +|+. ...+.+.+.++.++++ |+.+..++ .+|.|.++ .+.+.+
T Consensus 127 ie~A~~~g--~~~v~i~~-s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~--Gl~v~~~is~~fg~p~~~r~~~~~l~~ 201 (347)
T PLN02746 127 FEAAIAAG--AKEVAVFA-SASESFSKSNINCSIEESLVRYREVALAAKKH--SIPVRGYVSCVVGCPIEGPVPPSKVAY 201 (347)
T ss_pred HHHHHHcC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEeeecCCccCCCCHHHHHH
Confidence 33333332 57888888 888876644 3443 2445566788999998 98887666 67888774 455666
Q ss_pred HHHHHHhcCCCeEEE
Q 007001 360 TVNLIKEYKFPQVHI 374 (622)
Q Consensus 360 Tl~fl~el~~d~v~i 374 (622)
.++.+.+.+.+.+.+
T Consensus 202 ~~~~~~~~Gad~I~l 216 (347)
T PLN02746 202 VAKELYDMGCYEISL 216 (347)
T ss_pred HHHHHHHcCCCEEEe
Confidence 666677778877654
No 173
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=92.60 E-value=0.68 Score=42.30 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC---CcEEEEccccccch-h
Q 007001 77 YMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK---KPLVVAGCVPQGSR-D 133 (622)
Q Consensus 77 ~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~---~~VVVgGC~aq~~p-e 133 (622)
.+...|+..||+++.- ..+||+|+|++ .+.+.++++.+++.+ .++++||-.+.... .
T Consensus 18 ~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~ 97 (122)
T cd02071 18 VIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYEL 97 (122)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHH
Confidence 4556778889886542 45799999988 456677888888774 46788885433221 2
Q ss_pred hhcccccEEEcCCc
Q 007001 134 LKELEGVSIVGVQQ 147 (622)
Q Consensus 134 ~~~~~~d~VvG~~~ 147 (622)
+.+...|.+++.+.
T Consensus 98 ~~~~G~d~~~~~~~ 111 (122)
T cd02071 98 LKEMGVAEIFGPGT 111 (122)
T ss_pred HHHCCCCEEECCCC
Confidence 34556788887765
No 174
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=91.32 E-value=0.42 Score=49.32 Aligned_cols=177 Identities=16% Similarity=0.295 Sum_probs=114.6
Q ss_pred EEeCCCCCCCCCCcccCccCC---CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC
Q 007001 189 LPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP 265 (622)
Q Consensus 189 I~isrGC~~~CsFC~ip~~rG---~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~ 265 (622)
|....-|+.+|.||.+...+. +-+....++++.-+..+..+|++.+.|++++.... .| +.+....+.. ++
T Consensus 15 islte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr-~d----i~~i~~g~~~-l~- 87 (323)
T KOG2876|consen 15 ISLTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIR-QD----IVPIVAGLSS-LP- 87 (323)
T ss_pred hhhhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCccc-cc----ccchhhhhhc-cc-
Confidence 456788999999998764331 24556678888877777888999999999876655 33 2344444432 33
Q ss_pred CCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHh--CCCCEEEE
Q 007001 266 DGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIEL--VPGMQIAT 343 (622)
Q Consensus 266 ~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~--~pgi~i~t 343 (622)
+...+.+.+ +-..+...+ .. +.+.+ ...+.+.+.+....-...|-|.-+...+...++...+. .| ..+..
T Consensus 88 -gLks~~ITt-ng~vl~R~l---p~-lhkag-lssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~p-vkvn~ 159 (323)
T KOG2876|consen 88 -GLKSIGITT-NGLVLARLL---PQ-LHKAG-LSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNP-VKVNC 159 (323)
T ss_pred -chhhhceec-cchhhhhhh---hH-HHhhc-ccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCC-cceee
Confidence 444444442 211111222 22 22233 57888888888888888888888899999999988865 24 56666
Q ss_pred EEEEcCCCCCHHHHHHHHHHH--HhcCCCeEEEEEeeeCCCCccc
Q 007001 344 DIICGFPGETDEDFNQTVNLI--KEYKFPQVHISQFYPRPGTPAA 386 (622)
Q Consensus 344 d~IvGfPGETeedf~eTl~fl--~el~~d~v~i~~ysP~PGTpa~ 386 (622)
-++=|+-+. + .+||+ .+.++-.+.+-.|+|.-|....
T Consensus 160 v~~k~~n~~---e---v~Dfv~~tr~~p~DVrfIe~mpf~gn~~~ 198 (323)
T KOG2876|consen 160 VVMKGLNED---E---VFDFVLLTRMRPLDVRFIEFMPFDGNKWN 198 (323)
T ss_pred EEEeccCCC---c---ccceeeecCCCCcceEEEEecccCCCccc
Confidence 777777443 2 23333 2334456778889999887543
No 175
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.16 E-value=9.4 Score=40.30 Aligned_cols=147 Identities=16% Similarity=0.217 Sum_probs=89.9
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-.+.+.++.++-++.|.+.|++.|.+.+-....+-... .+-.+.++.+.+ .+ + ..+. .+.+. . ..+..
T Consensus 20 ~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~-~d~~e~~~~l~~-~~--~-~~~~--~l~~~--~---~~ie~ 87 (287)
T PRK05692 20 KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQM-ADAAEVMAGIQR-RP--G-VTYA--ALTPN--L---KGLEA 87 (287)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCccccccc-ccHHHHHHhhhc-cC--C-CeEE--EEecC--H---HHHHH
Confidence 45689999999999999999999987621101000000 122466666643 22 2 2222 22231 1 22333
Q ss_pred HHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE--cCCCC---CHHHHHHHHH
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTVN 362 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~Iv--GfPGE---Teedf~eTl~ 362 (622)
..+.+ ...+++.+ |.|+..+ +.+++. ...+.+.++++.+++. |+.+...+.+ |-|.+ +++.+.+.++
T Consensus 88 A~~~g--~~~v~i~~-~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~--g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 88 ALAAG--ADEVAVFA-SASEAFSQKNINCSIAESLERFEPVAEAAKQA--GVRVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHcC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 33332 46677776 5666543 444554 2445688899999999 9888777765 55766 6778888888
Q ss_pred HHHhcCCCeEEE
Q 007001 363 LIKEYKFPQVHI 374 (622)
Q Consensus 363 fl~el~~d~v~i 374 (622)
.+.+.+.+.+.+
T Consensus 163 ~~~~~G~d~i~l 174 (287)
T PRK05692 163 RLFALGCYEISL 174 (287)
T ss_pred HHHHcCCcEEEe
Confidence 888889887654
No 176
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=89.69 E-value=2.4 Score=50.25 Aligned_cols=97 Identities=15% Similarity=0.278 Sum_probs=67.9
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCCC--------------CCCcEEEEec-----hHHHHHHHHHHhcCCC
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNS--------------EEADIWLINT-----QSAMDTLIAKCKSAKK 119 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~--------------~~ADlviINT-----~~~~~~ii~~~k~~~~ 119 (622)
.+|++-|+|--.-..=...+...|+..||++.... ++||+|+|++ .+.+..+++.+|+.|.
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~ 662 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGR 662 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCC
Confidence 48999999997544456678889999999985432 5799999998 4456678888888864
Q ss_pred ---cEEEEccccccch-hhhcccccEEEcCCchHHHHHHHHH
Q 007001 120 ---PLVVAGCVPQGSR-DLKELEGVSIVGVQQIDRVVEVVEE 157 (622)
Q Consensus 120 ---~VVVgGC~aq~~p-e~~~~~~d~VvG~~~~~~l~ell~~ 157 (622)
+|++||-.+.... .+.+...|.++..+. .+.++|+.
T Consensus 663 ~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~--d~~~~L~~ 702 (714)
T PRK09426 663 EDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGT--VIADAAID 702 (714)
T ss_pred CCcEEEEeCCCChhhHHHHHhCCCCEEECCCC--CHHHHHHH
Confidence 4788886443222 245666787777765 34455443
No 177
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=89.47 E-value=15 Score=38.45 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=88.2
Q ss_pred CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 210 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 210 ~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
...+.+.++-++-++.|.+.|+++|.+..--...+.... .+..++++.+.. . .. .++..+-+. .+ ++.
T Consensus 13 ~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~-~d~~~~~~~l~~-~---~~--~~~~~~~~~--~~---dv~ 80 (274)
T cd07938 13 EKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQM-ADAEEVLAGLPR-R---PG--VRYSALVPN--LR---GAE 80 (274)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc-CCHHHHHhhccc-C---CC--CEEEEECCC--HH---HHH
Confidence 346789999999999999999999988631111100000 123344444432 1 12 222222221 12 233
Q ss_pred HHHhCCCCceeecccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHH
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTV 361 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~v-Lk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~I--vGfPGE---Teedf~eTl 361 (622)
...+.+ ...+++.+ +.|+.. .+.+++. ...+...+.++.+++. |+.+...++ +|.|.+ +.+.+.+.+
T Consensus 81 ~A~~~g--~~~i~i~~-~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~--G~~v~~~i~~~f~~~~~~~~~~~~~~~~~ 155 (274)
T cd07938 81 RALAAG--VDEVAVFV-SASETFSQKNINCSIAESLERFEPVAELAKAA--GLRVRGYVSTAFGCPYEGEVPPERVAEVA 155 (274)
T ss_pred HHHHcC--cCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeEecCCCCCCCCHHHHHHHH
Confidence 333332 56777777 455544 4556655 3557788889999999 888777766 555654 456677777
Q ss_pred HHHHhcCCCeEEE
Q 007001 362 NLIKEYKFPQVHI 374 (622)
Q Consensus 362 ~fl~el~~d~v~i 374 (622)
+.+.+.+.+.+.+
T Consensus 156 ~~~~~~Ga~~i~l 168 (274)
T cd07938 156 ERLLDLGCDEISL 168 (274)
T ss_pred HHHHHcCCCEEEE
Confidence 7788888876554
No 178
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=88.80 E-value=21 Score=37.12 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=90.9
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-...+.++.++-++.|.+.|++.|.+.. +... ....+.++.+.. .. ....+ .....+. .+ ++..
T Consensus 16 ~~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~-~~--~~~~v-~~~~r~~--~~---di~~ 79 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAFGVDYIELTS---PAAS----PQSRADCEAIAK-LG--LKAKI-LTHIRCH--MD---DARI 79 (262)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHh-CC--CCCcE-EEEecCC--HH---HHHH
Confidence 4678999999999999999999999874 2222 233455555543 22 11222 2223332 12 2333
Q ss_pred HHhCCCCceeecccCCCCCHHHHHh-hcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSA-MNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~-MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
....+ ...+++.+ +.|+..++. +++. ...+.+.+.++.+++. |+.+..++.-.| +-+.+.+.+.++.+.++
T Consensus 80 a~~~g--~~~i~i~~-~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (262)
T cd07948 80 AVETG--VDGVDLVF-GTSPFLREASHGKSITEIIESAVEVIEFVKSK--GIEVRFSSEDSF-RSDLVDLLRVYRAVDKL 153 (262)
T ss_pred HHHcC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEeeC-CCCHHHHHHHHHHHHHc
Confidence 33332 46677766 677766643 3433 3455677788999998 999988887766 34578888888999999
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 154 g~~~i~l 160 (262)
T cd07948 154 GVNRVGI 160 (262)
T ss_pred CCCEEEE
Confidence 8886543
No 179
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=87.75 E-value=20 Score=36.94 Aligned_cols=140 Identities=18% Similarity=0.209 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEee-cCCcchhHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM-TNPPFILEHLKEIAE 290 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~-~~p~~i~~~l~el~~ 290 (622)
...+.++.++-++.|.+.|++.|.+. +...+. .-.+.++.+.+..+ + .++.. ..+. .+. +..
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g---~p~~~~----~~~e~~~~l~~~~~--~---~~~~~~~r~~--~~~---v~~ 77 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVG---IPAMGE----EEREAIRAIVALGL--P---ARLIVWCRAV--KED---IEA 77 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEe---cCCCCH----HHHHHHHHHHhcCC--C---CEEEEeccCC--HHH---HHH
Confidence 46799999999999999999999885 222221 12367777765322 2 22221 2221 112 322
Q ss_pred HHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.... + ...+++.+ |.|+.-+ +.+|+. ...+.+.+.++.+++. |+.+...++... .-+++.+.+.++.+.+.
T Consensus 78 a~~~-g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 151 (259)
T cd07939 78 ALRC-G-VTAVHISI-PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDR--GLFVSVGAEDAS-RADPDFLIEFAEVAQEA 151 (259)
T ss_pred HHhC-C-cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEeeccCC-CCCHHHHHHHHHHHHHC
Confidence 2322 2 56777777 6666544 566653 3456677889999998 887765554443 23577788888888888
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 152 G~~~i~l 158 (259)
T cd07939 152 GADRLRF 158 (259)
T ss_pred CCCEEEe
Confidence 8876543
No 180
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=85.19 E-value=0.85 Score=49.71 Aligned_cols=41 Identities=24% Similarity=0.423 Sum_probs=37.0
Q ss_pred CCCCCCCCc-cEEEEEecccccchhHHHHHHHHHHhcCCeee
Q 007001 50 SLSPKIPGT-ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT 90 (622)
Q Consensus 50 ~~~~~~~~~-~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v 90 (622)
...+++||. .+..++|+||..|..|++++.+.|++.||..+
T Consensus 386 ~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~ 427 (552)
T KOG2492|consen 386 HIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVV 427 (552)
T ss_pred HHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhccCee
Confidence 457889995 79999999999999999999999999998653
No 181
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=84.99 E-value=52 Score=34.24 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCC-CCCCCc--CCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTG-AYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~-~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 288 (622)
.+.+.++.++-++.|.+.|+..|.+.-.... .+.... ..+ .+.++++.+... ....+.. +.++..... +.+
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~-~~~~~~~~~--~~l 88 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSK--GNTKIAV-MVDYGNDDI--DLL 88 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhc--cCCEEEE-EECCCCCCH--HHH
Confidence 4678999999999999999999877511110 111110 011 456666655321 1233333 244442221 123
Q ss_pred HHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 289 ~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
.... ..+ ...+++.+ +....+...+.++.+++. |+.+...++..+ +-+++.+.+.++.+.+.+
T Consensus 89 ~~a~-~~g-v~~iri~~------------~~~~~~~~~~~i~~ak~~--G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 89 EPAS-GSV-VDMIRVAF------------HKHEFDEALPLIKAIKEK--GYEVFFNLMAIS-GYSDEELLELLELVNEIK 151 (266)
T ss_pred HHHh-cCC-cCEEEEec------------ccccHHHHHHHHHHHHHC--CCeEEEEEEeec-CCCHHHHHHHHHHHHhCC
Confidence 3222 222 45666654 223688899999999999 999888888876 568899999999999999
Q ss_pred CCeEEE
Q 007001 369 FPQVHI 374 (622)
Q Consensus 369 ~d~v~i 374 (622)
++.+.+
T Consensus 152 ~~~i~l 157 (266)
T cd07944 152 PDVFYI 157 (266)
T ss_pred CCEEEE
Confidence 887654
No 182
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=84.08 E-value=63 Score=34.91 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEee-----cCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSS-----EDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g-----~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 286 (622)
...+.+++++-++.|.+.|+..|.+.- ...+.||... ..=.+.++++.+.++ ...+.. ++.|..-+ .+
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~---~~~~~~-ll~pg~~~--~~ 91 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVK---RAKVAV-LLLPGIGT--VH 91 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCC---CCEEEE-EeccCccC--HH
Confidence 357899999999999999999998861 1122333321 122466677766543 223322 23442111 12
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 366 (622)
++......+ ...+.+.. +.++ .+...+.++.+++. |..+...++..+ .-+++.+.+.++.+.+
T Consensus 92 dl~~a~~~g--vd~iri~~-~~~e-----------~d~~~~~i~~ak~~--G~~v~~~l~~s~-~~~~e~l~~~a~~~~~ 154 (333)
T TIGR03217 92 DLKAAYDAG--ARTVRVAT-HCTE-----------ADVSEQHIGMAREL--GMDTVGFLMMSH-MTPPEKLAEQAKLMES 154 (333)
T ss_pred HHHHHHHCC--CCEEEEEe-ccch-----------HHHHHHHHHHHHHc--CCeEEEEEEccc-CCCHHHHHHHHHHHHh
Confidence 243333332 45566554 2222 24578899999999 999888888876 5688999999999999
Q ss_pred cCCCeEEE
Q 007001 367 YKFPQVHI 374 (622)
Q Consensus 367 l~~d~v~i 374 (622)
++.+.+.+
T Consensus 155 ~Ga~~i~i 162 (333)
T TIGR03217 155 YGADCVYI 162 (333)
T ss_pred cCCCEEEE
Confidence 99887654
No 183
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=83.79 E-value=38 Score=37.18 Aligned_cols=142 Identities=13% Similarity=0.050 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
.+.+.++.++-++.|.+.|++.|.+. +...+. .-.+.++.+.+.. . ..++...... ..+. +...
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G---~p~~~~----~~~e~i~~i~~~~----~-~~~i~~~~r~-~~~d---i~~a 84 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG---FPAVSE----DEKEAIKAIAKLG----L-NASILALNRA-VKSD---IDAS 84 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEe---CCCcCh----HHHHHHHHHHhcC----C-CeEEEEEccc-CHHH---HHHH
Confidence 47899999999999999999999874 233322 1235677776521 1 1233322221 1222 3333
Q ss_pred HhCCCCceeecccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 292 LRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgsd~v-Lk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
...+ ...+++.+ +.|+.- .+.+++. ...+.+.+.++.+++. |+.+..++.-+. --+.+.+.+.++.+.+.+
T Consensus 85 ~~~g--~~~i~i~~-~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~--G~~v~~~~ed~~-r~~~~~l~~~~~~~~~~G 158 (378)
T PRK11858 85 IDCG--VDAVHIFI-ATSDIHIKHKLKKTREEVLERMVEAVEYAKDH--GLYVSFSAEDAS-RTDLDFLIEFAKAAEEAG 158 (378)
T ss_pred HhCC--cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeccCC-CCCHHHHHHHHHHHHhCC
Confidence 3332 56788877 555544 4555553 2445666788899988 888776665543 345777888888888888
Q ss_pred CCeEEEE
Q 007001 369 FPQVHIS 375 (622)
Q Consensus 369 ~d~v~i~ 375 (622)
.+.+.+.
T Consensus 159 a~~I~l~ 165 (378)
T PRK11858 159 ADRVRFC 165 (378)
T ss_pred CCEEEEe
Confidence 8876543
No 184
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=83.21 E-value=7.4 Score=39.31 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVL 292 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~ 292 (622)
..+.++.++-++.|.+.|+..|.+. +...+. .-.+.++.+.+..+ ......+....... .+...+.+
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg---~~~~~~----~~~~~v~~~~~~~~--~~~~~~~~~~~~~~----i~~~~~~~ 76 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVG---FPFASE----DDFEQVRRLREALP--NARLQALCRANEED----IERAVEAA 76 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEE---HCTSSH----HHHHHHHHHHHHHH--SSEEEEEEESCHHH----HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEc---ccccCH----HHHHHhhhhhhhhc--ccccceeeeehHHH----HHHHHHhh
Confidence 4788999999999999999999886 122221 12344555555443 22222222222222 22212222
Q ss_pred hCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 007001 293 RHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369 (622)
Q Consensus 293 ~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 369 (622)
...+ ...+++.+ +.|+..+ ..+++. ...+.+.+.++.+++. |..+...++-.. .-+++.+.+.++.+.++++
T Consensus 77 ~~~g-~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~--g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 77 KEAG-IDIIRIFI-SVSDLHIRKNLNKSREEALERIEEAVKYAKEL--GYEVAFGCEDAS-RTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHTT-SSEEEEEE-ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT--TSEEEEEETTTG-GSSHHHHHHHHHHHHHHT-
T ss_pred Hhcc-CCEEEecC-cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc--CCceEeCccccc-cccHHHHHHHHHHHHHcCC
Confidence 2222 45676665 5566443 445543 2467788888999999 888855554443 3478889999999999999
Q ss_pred CeEEEE
Q 007001 370 PQVHIS 375 (622)
Q Consensus 370 d~v~i~ 375 (622)
+.+.+-
T Consensus 152 ~~i~l~ 157 (237)
T PF00682_consen 152 DIIYLA 157 (237)
T ss_dssp SEEEEE
T ss_pred eEEEee
Confidence 877553
No 185
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=82.69 E-value=3.1 Score=40.49 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=44.8
Q ss_pred cEEEEEecccccchhHHHHHHH-----HHHhcCCeeeCCCCCCcEEEEec--hHHHHHHHHHH-hc-CCCc--EEEEccc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINT--QSAMDTLIAKC-KS-AKKP--LVVAGCV 127 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~-----~L~~~G~~~v~~~~~ADlviINT--~~~~~~ii~~~-k~-~~~~--VVVgGC~ 127 (622)
..+|+.++|+ |=-|.|.++- .++..|+..+.++..||+++|+. ..++...++++ .+ ..+| |.+|.|.
T Consensus 31 ~Slw~~~~~t--~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlVtG~vT~km~~~l~~~yeqmPePK~VIA~G~CA 108 (173)
T PRK14818 31 SSLYYLTFGL--ACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQMPEPKYVISMGSCS 108 (173)
T ss_pred CCceeeEeCC--ccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEEeCcCccccHHHHHHHHHhCCCCCEEEEecccc
Confidence 4567777774 3377777653 56778999999999999999988 33333333322 22 2444 3366676
Q ss_pred ccc
Q 007001 128 PQG 130 (622)
Q Consensus 128 aq~ 130 (622)
.+.
T Consensus 109 ~sG 111 (173)
T PRK14818 109 NCG 111 (173)
T ss_pred ccC
Confidence 554
No 186
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=82.38 E-value=41 Score=36.69 Aligned_cols=141 Identities=15% Similarity=0.141 Sum_probs=85.8
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-.+.+.++.++-++.|.+.|++.|.+. +...+. .-.+.++.+.+..+ + ..+. ...++. .+ ++..
T Consensus 17 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG---~p~~~~----~~~e~i~~i~~~~~--~-~~i~-~~~r~~--~~---di~~ 80 (365)
T TIGR02660 17 GVAFTAAEKLAIARALDEAGVDELEVG---IPAMGE----EERAVIRAIVALGL--P-ARLM-AWCRAR--DA---DIEA 80 (365)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCH----HHHHHHHHHHHcCC--C-cEEE-EEcCCC--HH---HHHH
Confidence 356899999999999999999999885 222222 11366777765433 2 2221 112232 12 2333
Q ss_pred HHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.... + ...+++.+ +.|+.-+ ..+++. ...+.+.++++.+++. |+.+..++.-+. --+.+.+.+.++.+.+.
T Consensus 81 a~~~-g-~~~i~i~~-~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~ 154 (365)
T TIGR02660 81 AARC-G-VDAVHISI-PVSDLQIEAKLRKDRAWVLERLARLVSFARDR--GLFVSVGGEDAS-RADPDFLVELAEVAAEA 154 (365)
T ss_pred HHcC-C-cCEEEEEE-ccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhC--CCEEEEeecCCC-CCCHHHHHHHHHHHHHc
Confidence 3333 2 45677776 6666555 445543 2345566888889988 887765554432 33467777777888888
Q ss_pred CCCeEE
Q 007001 368 KFPQVH 373 (622)
Q Consensus 368 ~~d~v~ 373 (622)
+.+.+.
T Consensus 155 Ga~~i~ 160 (365)
T TIGR02660 155 GADRFR 160 (365)
T ss_pred CcCEEE
Confidence 887654
No 187
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=82.23 E-value=49 Score=34.31 Aligned_cols=145 Identities=15% Similarity=0.071 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
...+.++.++-++.|.+.|+..|.+.. +..+.+ . .+.++.+.+..+ + ..+.. ++++. ...++...+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~~~---~-~~~~~~l~~~~~--~-~~~~~-l~r~~--~~~v~~a~~~ 81 (268)
T cd07940 15 VSLTPEEKLEIARQLDELGVDVIEAGF---PAASPG---D-FEAVKRIAREVL--N-AEICG-LARAV--KKDIDAAAEA 81 (268)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCHH---H-HHHHHHHHHhCC--C-CEEEE-EccCC--HhhHHHHHHh
Confidence 467899999999999999999998853 111111 1 366677765443 2 23222 22232 1222222221
Q ss_pred HhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 292 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
... .....+.+-+ |.|+.-+ +.+++. ...+.+.+.++.+++. |+.+...++.+. .-+++.+.+.++.+.+++
T Consensus 82 ~~~-~~~~~i~i~~-~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~--G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~G 156 (268)
T cd07940 82 LKP-AKVDRIHTFI-ATSDIHLKYKLKKTREEVLERAVEAVEYAKSH--GLDVEFSAEDAT-RTDLDFLIEVVEAAIEAG 156 (268)
T ss_pred CCC-CCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEeeecCC-CCCHHHHHHHHHHHHHcC
Confidence 111 1134555555 6666655 445654 2457788899999998 887764444443 246777788888888989
Q ss_pred CCeEEE
Q 007001 369 FPQVHI 374 (622)
Q Consensus 369 ~d~v~i 374 (622)
++.+.+
T Consensus 157 ~~~i~l 162 (268)
T cd07940 157 ATTINI 162 (268)
T ss_pred CCEEEE
Confidence 876544
No 188
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=81.98 E-value=57 Score=35.59 Aligned_cols=143 Identities=14% Similarity=0.035 Sum_probs=90.5
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-...+.++.++-++.|.+.|++.|.+.. +..+. .-.+.++.+.+... ...+. ....+. .+. +..
T Consensus 16 ~~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~~----~~~e~i~~i~~~~~---~~~v~-~~~r~~--~~d---i~~ 79 (363)
T TIGR02090 16 GVSLTVEQKVEIARKLDELGVDVIEAGF---PIASE----GEFEAIKKISQEGL---NAEIC-SLARAL--KKD---IDK 79 (363)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCh----HHHHHHHHHHhcCC---CcEEE-EEcccC--HHH---HHH
Confidence 3568999999999999999999998742 22222 12456666665322 12221 112221 222 333
Q ss_pred HHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
....+ ...+++-+ +.||.-+ +.+++. ...+.+.+.++.+++. |+.+...+.-.. --+.+.+.+.++.+.+.
T Consensus 80 a~~~g--~~~i~i~~-~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~eda~-r~~~~~l~~~~~~~~~~ 153 (363)
T TIGR02090 80 AIDCG--VDSIHTFI-ATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEH--GLIVEFSAEDAT-RTDIDFLIKVFKRAEEA 153 (363)
T ss_pred HHHcC--cCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEEEeecC-CCCHHHHHHHHHHHHhC
Confidence 33332 45666655 4555544 455554 3467788899999999 988887777664 34678888888889999
Q ss_pred CCCeEEEE
Q 007001 368 KFPQVHIS 375 (622)
Q Consensus 368 ~~d~v~i~ 375 (622)
+.+.+.+.
T Consensus 154 g~~~i~l~ 161 (363)
T TIGR02090 154 GADRINIA 161 (363)
T ss_pred CCCEEEEe
Confidence 98876554
No 189
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=81.84 E-value=61 Score=33.82 Aligned_cols=149 Identities=17% Similarity=0.062 Sum_probs=84.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchh-HHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL-EHLKEIAE 290 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~-~~l~el~~ 290 (622)
...+.++.++-++.|.+.|++.|.+... +... .-.+.++.+.+... .+....-+....+..+. .....+..
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~--~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWP--GSNP-----KDTEFFARAKKLKL-KHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCC--cCCH-----HHHHHHHHHHHcCC-CCcEEEEEecccccCCCccchHHHHH
Confidence 5678999999999999999999998431 1111 12444566554210 01112211111222121 11112333
Q ss_pred HHhCCCCceeecccCCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHH
Q 007001 291 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPG--ETDEDFNQTVNLIK 365 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~-vLk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG--ETeedf~eTl~fl~ 365 (622)
+...+ ...+++.+ |.|+. ..+.+|+. ...+.+.+.++.+++. |+.+..+.+.-+.+ -+.+.+.+.++.+.
T Consensus 87 a~~~g--~~~i~i~~-~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~--G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~ 161 (273)
T cd07941 87 LLEAG--TPVVTIFG-KSWDLHVTEALGTTLEENLAMIRDSVAYLKSH--GREVIFDAEHFFDGYKANPEYALATLKAAA 161 (273)
T ss_pred HHhCC--CCEEEEEE-cCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEeEEeccccCCCCHHHHHHHHHHHH
Confidence 33332 45666655 45554 34556655 4677888899999999 98887754422222 34666677778788
Q ss_pred hcCCCeEE
Q 007001 366 EYKFPQVH 373 (622)
Q Consensus 366 el~~d~v~ 373 (622)
+.+.+.+.
T Consensus 162 ~~g~~~i~ 169 (273)
T cd07941 162 EAGADWLV 169 (273)
T ss_pred hCCCCEEE
Confidence 88887654
No 190
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.98 E-value=4.4 Score=40.25 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC----CcEEEEccccccc
Q 007001 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK----KPLVVAGCVPQGS 131 (622)
Q Consensus 75 se~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~----~~VVVgGC~aq~~ 131 (622)
...++..|+..||++++- ..++|+|.+++ ...+.++++.+|+.+ .+|+|||...+.
T Consensus 99 ~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~- 177 (201)
T cd02070 99 KNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ- 177 (201)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH-
Confidence 456778889999997642 46799999987 556777788887665 469999976653
Q ss_pred hhh-hcccccEE
Q 007001 132 RDL-KELEGVSI 142 (622)
Q Consensus 132 pe~-~~~~~d~V 142 (622)
+. ..+.+|..
T Consensus 178 -~~~~~~GaD~~ 188 (201)
T cd02070 178 -EFADEIGADGY 188 (201)
T ss_pred -HHHHHcCCcEE
Confidence 33 34444544
No 191
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=80.65 E-value=3.8 Score=40.33 Aligned_cols=68 Identities=24% Similarity=0.561 Sum_probs=41.8
Q ss_pred EEEEEec--ccccchhHHHHHHH-----HHHhcCCeee-CCCCCCcEEEEec--hHHHHHHHHHHhc--CCCc--EEEEc
Q 007001 60 TIYMKTF--GCSHNQSDSEYMAG-----QLSAFGYALT-DNSEEADIWLINT--QSAMDTLIAKCKS--AKKP--LVVAG 125 (622)
Q Consensus 60 ~v~i~Tl--GC~~N~~Dse~m~~-----~L~~~G~~~v-~~~~~ADlviINT--~~~~~~ii~~~k~--~~~~--VVVgG 125 (622)
.+|..++ || -|.|.++- .++..|+..+ ..+..||+++|+. ...+...++++.+ ..++ |.+|-
T Consensus 42 slw~~~~~~~C----C~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllVtG~VT~~m~~~l~~~~e~~p~pK~VIAvGs 117 (182)
T PRK14816 42 SLWPLTFATSC----CGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGG 117 (182)
T ss_pred ccceeeeCcch----HHHHHHHhcCccccHHHhCccccCCCCCcceEEEEecCCcchhHHHHHHHHHhcCCCCEEEEecc
Confidence 3454444 67 78887764 4567888776 8899999999988 3333333333322 2344 44666
Q ss_pred cccccc
Q 007001 126 CVPQGS 131 (622)
Q Consensus 126 C~aq~~ 131 (622)
|..+.-
T Consensus 118 CA~~GG 123 (182)
T PRK14816 118 CAVSGG 123 (182)
T ss_pred ccccCC
Confidence 876553
No 192
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=80.17 E-value=92 Score=33.67 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~-----d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 286 (622)
...+.+++++-++.|.+.|+..|.+.-. ....||... ..-.+.++.+.+..+ ...+... +.|..-+ .+
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~~~e~i~~~~~~~~---~~~~~~l-l~pg~~~--~~ 92 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HTDEEYIEAAAEVVK---QAKIAAL-LLPGIGT--VD 92 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CCHHHHHHHHHHhCC---CCEEEEE-eccCccc--HH
Confidence 4578999999999999999999888521 122233221 123567777766543 2333322 3342111 12
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 366 (622)
++......+ ...+.+.. +.++ .+...+.++.+|+. |..+...++... .-+++.+.+.++.+.+
T Consensus 93 dl~~a~~~g--vd~iri~~-~~~e-----------~~~~~~~i~~ak~~--G~~v~~~l~~a~-~~~~e~l~~~a~~~~~ 155 (337)
T PRK08195 93 DLKMAYDAG--VRVVRVAT-HCTE-----------ADVSEQHIGLAREL--GMDTVGFLMMSH-MAPPEKLAEQAKLMES 155 (337)
T ss_pred HHHHHHHcC--CCEEEEEE-ecch-----------HHHHHHHHHHHHHC--CCeEEEEEEecc-CCCHHHHHHHHHHHHh
Confidence 343333332 45555554 2222 34678999999999 999988888874 6689999999999999
Q ss_pred cCCCeEEE
Q 007001 367 YKFPQVHI 374 (622)
Q Consensus 367 l~~d~v~i 374 (622)
++.+.+.+
T Consensus 156 ~Ga~~i~i 163 (337)
T PRK08195 156 YGAQCVYV 163 (337)
T ss_pred CCCCEEEe
Confidence 99887644
No 193
>PRK00915 2-isopropylmalate synthase; Validated
Probab=79.07 E-value=50 Score=37.80 Aligned_cols=146 Identities=13% Similarity=0.015 Sum_probs=83.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-.+.+.++-++-++.|.+.|++.|.+.. ...+.+ + .+.++++.+..+ +..-..+...++. .++...+
T Consensus 20 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~s~~---d-~~~v~~i~~~~~--~~~i~a~~r~~~~----did~a~~ 86 (513)
T PRK00915 20 GASLTVEEKLQIAKQLERLGVDVIEAGF---PASSPG---D-FEAVKRIARTVK--NSTVCGLARAVKK----DIDAAAE 86 (513)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcC---CCCChH---H-HHHHHHHHhhCC--CCEEEEEccCCHH----HHHHHHH
Confidence 3578999999999999999999998852 122211 1 344566655432 2222222212222 2222322
Q ss_pred HHhCCCCceeecccCCCCCHH-HHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDA-VLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~-vLk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.+...+ ...+++-+ +.||- +...+++. ...+.+.+.++.+++. |..+..+..-+.. -+.+.+.+.++.+.+.
T Consensus 87 a~~~~~-~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~f~~ed~~r-~d~~~l~~~~~~~~~~ 161 (513)
T PRK00915 87 ALKPAE-APRIHTFI-ATSPIHMEYKLKMSREEVLEMAVEAVKYARSY--TDDVEFSAEDATR-TDLDFLCRVVEAAIDA 161 (513)
T ss_pred HhhcCC-CCEEEEEE-CCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEeCCCCC-CCHHHHHHHHHHHHHc
Confidence 222222 45677766 44444 33455543 2345566888899998 8776555544432 2356677777778888
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 162 Ga~~i~l 168 (513)
T PRK00915 162 GATTINI 168 (513)
T ss_pred CCCEEEE
Confidence 8776543
No 194
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=79.03 E-value=87 Score=32.71 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCCCCCc-eeEEE----ee-cCCcchhH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELPPDGS-TMLRI----GM-TNPPFILE 283 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~--yg~d~~~~l~eLL~~l~~~l~~~~~-~~iri----~~-~~p~~i~~ 283 (622)
...+.++.++-+..|.+.|+..|.+...-.+. ++. ...+-.+.++.+.+..+.... .+.|- ++ ..|..+.+
T Consensus 16 ~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~-~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~ 94 (275)
T cd07937 16 TRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRF-LNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVE 94 (275)
T ss_pred eeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccc-cCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHH
Confidence 35788998999999999999999886421100 110 012235666777665431111 12221 11 13443333
Q ss_pred HHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHH
Q 007001 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVN 362 (622)
Q Consensus 284 ~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~ 362 (622)
.. +...... + ...+++.. +.|+ .+...+.++.+++. |..+...+.+-+ +.-+++.+.+.++
T Consensus 95 ~d--i~~~~~~-g-~~~iri~~-~~~~-----------~~~~~~~i~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~ 156 (275)
T cd07937 95 LF--VEKAAKN-G-IDIFRIFD-ALND-----------VRNLEVAIKAVKKA--GKHVEGAICYTGSPVHTLEYYVKLAK 156 (275)
T ss_pred HH--HHHHHHc-C-CCEEEEee-cCCh-----------HHHHHHHHHHHHHC--CCeEEEEEEecCCCCCCHHHHHHHHH
Confidence 22 3333332 2 34555544 3333 57889999999999 988776665422 5567888999999
Q ss_pred HHHhcCCCeEEEE
Q 007001 363 LIKEYKFPQVHIS 375 (622)
Q Consensus 363 fl~el~~d~v~i~ 375 (622)
.+.+++.+.+.+-
T Consensus 157 ~~~~~Ga~~i~l~ 169 (275)
T cd07937 157 ELEDMGADSICIK 169 (275)
T ss_pred HHHHcCCCEEEEc
Confidence 9999999876553
No 195
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=78.87 E-value=1.1e+02 Score=34.76 Aligned_cols=140 Identities=13% Similarity=0.097 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CCCcCCCHHHHHHHHHHhCCCCCce---eEEE----eec-CCcchhH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GRDIGVNLPILLNAIVAELPPDGST---MLRI----GMT-NPPFILE 283 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~y-g~d~~~~l~eLL~~l~~~l~~~~~~---~iri----~~~-~p~~i~~ 283 (622)
..+.++.+.-++.|.+.|+..|.+.|.-++.. .+-...+-.+.++.+.+.++ +.. +.|. ++. .|+++.+
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~~dDvv~ 98 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLK--NTKIQMLLRGQNLVGYRHYADDVVE 98 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCC--CCEEEEEeccccccCcccccchhhH
Confidence 56888888888999999999998865433210 00011234677777776544 211 1121 111 2333322
Q ss_pred HHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCCCHHHHHHHH
Q 007001 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDII--CGFPGETDEDFNQTV 361 (622)
Q Consensus 284 ~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~I--vGfPGETeedf~eTl 361 (622)
. +.+.+...+ ...+++.. +.|+ .+.....++.+++. |..+...+- ++ |--|.+.+.+..
T Consensus 99 ~---fv~~A~~~G-vd~irif~-~lnd-----------~~n~~~~i~~ak~~--G~~v~~~i~~t~~-p~~t~e~~~~~a 159 (467)
T PRK14041 99 L---FVKKVAEYG-LDIIRIFD-ALND-----------IRNLEKSIEVAKKH--GAHVQGAISYTVS-PVHTLEYYLEFA 159 (467)
T ss_pred H---HHHHHHHCC-cCEEEEEE-eCCH-----------HHHHHHHHHHHHHC--CCEEEEEEEeccC-CCCCHHHHHHHH
Confidence 2 222222222 34455444 4444 23455566666666 655443332 23 555666666666
Q ss_pred HHHHhcCCCeEE
Q 007001 362 NLIKEYKFPQVH 373 (622)
Q Consensus 362 ~fl~el~~d~v~ 373 (622)
+.+.+.+.+.+.
T Consensus 160 ~~l~~~Gad~I~ 171 (467)
T PRK14041 160 RELVDMGVDSIC 171 (467)
T ss_pred HHHHHcCCCEEE
Confidence 666666655543
No 196
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=78.72 E-value=14 Score=30.95 Aligned_cols=57 Identities=30% Similarity=0.456 Sum_probs=42.4
Q ss_pred CCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEee
Q 007001 417 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKI 477 (622)
Q Consensus 417 vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~ 477 (622)
.|.+++|-|++..+.|. -+.|-.+| .|++|+ ...|+.|+|+|+.+.+..-++++++.
T Consensus 15 eGe~y~V~I~d~g~~GD-GiarveGf-vVFVp~--a~~Gd~V~vkI~~v~~~~afaevve~ 71 (73)
T COG3269 15 EGETYEVEIEDVGDQGD-GIARVEGF-VVFVPG--AEVGDEVKVKITKVKPNFAFAEVVER 71 (73)
T ss_pred cCCEEEEEEEEeccCCC-ceEEEEEE-EEEeCC--CCCCCeeeEEEEEeeccceeeEEeec
Confidence 69999999999864442 23444433 356654 35799999999999999999998865
No 197
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=78.52 E-value=19 Score=37.47 Aligned_cols=145 Identities=13% Similarity=0.114 Sum_probs=84.6
Q ss_pred CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 210 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 210 ~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
..+.++.+.+++.++.+.+.|..-|-+-++. -+.+....+..+++.+.+.. ...+.+.+.+|..+..- .
T Consensus 18 ~~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~---~~~eE~~r~~~~v~~l~~~~----~~plsIDT~~~~v~eaa----L 86 (261)
T PRK07535 18 AIEAKDAAFIQKLALKQAEAGADYLDVNAGT---AVEEEPETMEWLVETVQEVV----DVPLCIDSPNPAAIEAG----L 86 (261)
T ss_pred HHHcCCHHHHHHHHHHHHHCCCCEEEECCCC---CchhHHHHHHHHHHHHHHhC----CCCEEEeCCCHHHHHHH----H
Confidence 3567899999999999999999987776542 12221234666777765432 24577776666533221 1
Q ss_pred HHHhCCCCceeecccCCCCCHHHHHhhc-------------CCC--C----HHHHHHHHHHHHHhCCCC---EEEEEEEE
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMN-------------REY--T----LSDFRTVVDTLIELVPGM---QIATDIIC 347 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~vLk~Mn-------------R~~--t----~e~~~~~I~~lr~~~pgi---~i~td~Iv 347 (622)
+......+.+.++..-+. .++++..+. ++. | .+.+.+.++.+.++ |+ .+..|=.+
T Consensus 87 ~~~~G~~iINsIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~--GI~~~~IilDPgi 163 (261)
T PRK07535 87 KVAKGPPLINSVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY--GIPPEDIYIDPLV 163 (261)
T ss_pred HhCCCCCEEEeCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc--CCCHhHEEEeCCC
Confidence 111111233333322111 334432221 111 1 35567777888888 88 78889999
Q ss_pred cCCCCCHHHHHHHHHHHHhcC
Q 007001 348 GFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 348 GfPGETeedf~eTl~fl~el~ 368 (622)
|+.|-+.+...++++.++.++
T Consensus 164 ~~~~~~~~~~~~~l~~i~~l~ 184 (261)
T PRK07535 164 LPLSAAQDAGPEVLETIRRIK 184 (261)
T ss_pred CcccCChHHHHHHHHHHHHHH
Confidence 977777777766666665553
No 198
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=75.29 E-value=6.7 Score=37.33 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=35.8
Q ss_pred hHHHHHHHH-----HHhcC-CeeeCCCCCCcEEEEec--hHHHHHHHHHHhcC--CCc--EEEEcccccc
Q 007001 73 SDSEYMAGQ-----LSAFG-YALTDNSEEADIWLINT--QSAMDTLIAKCKSA--KKP--LVVAGCVPQG 130 (622)
Q Consensus 73 ~Dse~m~~~-----L~~~G-~~~v~~~~~ADlviINT--~~~~~~ii~~~k~~--~~~--VVVgGC~aq~ 130 (622)
-|.|.++.. ++..| ...+..+.+||+.+|+. ...+...++++.++ .++ |.+|-|....
T Consensus 29 C~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllVtG~vt~~~~~~l~~~~e~~p~pk~VIA~GsCA~~G 98 (145)
T TIGR01957 29 CAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQMPEPKWVISMGACANSG 98 (145)
T ss_pred HHHHHHHccCccccHHHhCCceecCCCCcceEEEEecCCcHHHHHHHHHHHHhccCCceEEEecceeecC
Confidence 777776643 45567 66778899999999998 33344444444332 333 3356675543
No 199
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=74.95 E-value=5.6 Score=41.13 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=79.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-----CCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-----GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-----~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 285 (622)
.+..+++.+++.++.+.+.|..-|-+.++.+....... ...+..+++.+.+.. ...+.+.+.+|..+..-+
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~~piSIDT~~~~v~~aaL 93 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----DVPISVDTFNAEVAEAAL 93 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCcHHHHHHHH
Confidence 45578999999999999999998888765442221110 023556666665421 345777776665332211
Q ss_pred HHHHHHHhCCCCceeecccCCCCCHHHHHhhcC-----------C------------CC----HHHHHHHHHHHHHhCCC
Q 007001 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR-----------E------------YT----LSDFRTVVDTLIELVPG 338 (622)
Q Consensus 286 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR-----------~------------~t----~e~~~~~I~~lr~~~pg 338 (622)
+. ...+.+.+ ..+..++++++.+.+ + .+ .+.+.+.++.+.++ |
T Consensus 94 ----~~--g~~iINdi--s~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--G 163 (258)
T cd00423 94 ----KA--GADIINDV--SGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEA--G 163 (258)
T ss_pred ----Hh--CCCEEEeC--CCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHc--C
Confidence 10 01122222 122222344332211 0 01 35667777778887 7
Q ss_pred C---EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 339 M---QIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 339 i---~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
+ .+..|-.+||+. +.++...+++.+..+
T Consensus 164 i~~~~IilDPg~g~~k-~~~~~~~~l~~i~~~ 194 (258)
T cd00423 164 IPPEDIILDPGIGFGK-TEEHNLELLRRLDAF 194 (258)
T ss_pred CCHHHEEEeCCCCccC-CHHHHHHHHHHHHHH
Confidence 5 578899999877 555554555555544
No 200
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=72.63 E-value=62 Score=34.29 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH---HHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE---HLK 286 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~---~l~ 286 (622)
+-++..+|.+.++.+.+.|+++|.++.+|....+...+ ..-.+|++.+..... +...+... .+|..-.+ ...
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~--~~f~i~~A-~~Pe~h~~s~~~~~ 163 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRG--GIFDIGVA-AYPEGHPESKDVKE 163 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcC--CeEEEEEE-eCCCCCccchhhHH
Confidence 34689999999999999999999999888751111111 245778877765432 22444443 56653321 122
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGf 349 (622)
++..+.+. +++|-+.++..+ -++.+.+.+..++++++ |+ ..-++.|+
T Consensus 164 d~~~lkrK----------v~aGAd~~iTQ~--~fd~e~~~~~~~~~~~~--g~--~~pI~~Gi 210 (291)
T COG0685 164 DIKRLKRK----------VDAGADFFITQF--FFDVEAFERFAERVRAA--GI--DIPIIPGI 210 (291)
T ss_pred HHHHHHHH----------HhcchHHHHHHH--ccCHHHHHHHHHHHHhc--CC--CCCeeecc
Confidence 33333322 346777776654 46889999999999998 65 33555555
No 201
>PRK09389 (R)-citramalate synthase; Provisional
Probab=72.59 E-value=1.4e+02 Score=33.95 Aligned_cols=142 Identities=13% Similarity=0.010 Sum_probs=87.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-.+.+.++.++-++.|.+.|++.|.... +..+.+ =.+.++.+.+.. ....+.. +.... .+. +..
T Consensus 18 g~~~s~e~K~~ia~~L~~~Gv~~IE~G~---p~~~~~----d~e~v~~i~~~~---~~~~i~a-~~r~~--~~d---i~~ 81 (488)
T PRK09389 18 GVSLTPEEKLEIARKLDELGVDVIEAGS---AITSEG----EREAIKAVTDEG---LNAEICS-FARAV--KVD---IDA 81 (488)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeC---CcCCHH----HHHHHHHHHhcC---CCcEEEe-ecccC--HHH---HHH
Confidence 4578999999999999999999998853 222221 145666665432 1122211 12221 222 333
Q ss_pred HHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
....+ .+.+|+.+ +.|+.-+ ..+++. ...+.+.+.++.+++. |+.+..+..-+. --+.+-+.+.++.+.+.
T Consensus 82 a~~~g--~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--g~~v~~~~ed~~-r~~~~~l~~~~~~~~~~ 155 (488)
T PRK09389 82 ALECD--VDSVHLVV-PTSDLHIEYKLKKTREEVLETAVEAVEYAKDH--GLIVELSGEDAS-RADLDFLKELYKAGIEA 155 (488)
T ss_pred HHhCC--cCEEEEEE-ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEeeCC-CCCHHHHHHHHHHHHhC
Confidence 33322 46777777 6666544 344442 3445667777888888 888887877653 34566677888888898
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 156 Ga~~i~l 162 (488)
T PRK09389 156 GADRICF 162 (488)
T ss_pred CCCEEEE
Confidence 8887544
No 202
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=72.27 E-value=84 Score=33.38 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVA 261 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~ 261 (622)
|.++.+++...+..+.+.|+++|..+.+|...-+......-.+|++.+..
T Consensus 92 r~~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~ 141 (296)
T PRK09432 92 IDATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKS 141 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHH
Confidence 34688899999999999999999888777654332111222466665543
No 203
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=71.94 E-value=90 Score=32.84 Aligned_cols=147 Identities=10% Similarity=0.097 Sum_probs=87.4
Q ss_pred cCCCCHHHHHHHHHHHH-HCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-ceeEEEeecCCcchhHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVI-ADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEHLKEI 288 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~-~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~-~~~iri~~~~p~~i~~~l~el 288 (622)
-...+.++-++-++.|. +.|+++|.+.. +....+ -.+.+.++.+.-...+ ...+++...-+. .. .+
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s~~----e~~av~~~~~~~~~~~~~~~~~~~a~~~~--~~---~~ 80 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKVDRIEVAS---ARVSEG----EFEAVQKIIDWAAEEGLLDRIEVLGFVDG--DK---SV 80 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCEEEecC---CCCCHH----HHHHHHHHHHHhhhhccccCcEEEEecCc--HH---HH
Confidence 45688999999999875 45999998863 222221 1244555543210000 011233222222 12 23
Q ss_pred HHHHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEE-cCC-CCCHHHHHHHHHH
Q 007001 289 AEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIIC-GFP-GETDEDFNQTVNL 363 (622)
Q Consensus 289 ~~l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~Iv-GfP-GETeedf~eTl~f 363 (622)
...... + ...+++.+ |.|+.-. +.+|+. ...+++.+.++.+++. |+.+..++.- |-| --+++.+.+.++.
T Consensus 81 ~~A~~~-g-~~~i~i~~-~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~--G~~v~~~~~d~~~~~r~~~~~~~~~~~~ 155 (280)
T cd07945 81 DWIKSA-G-AKVLNLLT-KGSLKHCTEQLRKTPEEHFADIREVIEYAIKN--GIEVNIYLEDWSNGMRDSPDYVFQLVDF 155 (280)
T ss_pred HHHHHC-C-CCEEEEEE-eCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhC--CCEEEEEEEeCCCCCcCCHHHHHHHHHH
Confidence 322222 2 57788888 6666555 555554 3556778888888888 8888877774 222 3467888888888
Q ss_pred HHhcCCCeEEE
Q 007001 364 IKEYKFPQVHI 374 (622)
Q Consensus 364 l~el~~d~v~i 374 (622)
+.+++.+.+.+
T Consensus 156 ~~~~G~~~i~l 166 (280)
T cd07945 156 LSDLPIKRIML 166 (280)
T ss_pred HHHcCCCEEEe
Confidence 99999887654
No 204
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=71.61 E-value=3.4 Score=40.89 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=39.6
Q ss_pred EEEEecccccchhHHHHHH-----HHHHhcCCeeeCCCCCCcEEEEec--hHHHHHHH-HHHhc-CCCc--EEEEccccc
Q 007001 61 IYMKTFGCSHNQSDSEYMA-----GQLSAFGYALTDNSEEADIWLINT--QSAMDTLI-AKCKS-AKKP--LVVAGCVPQ 129 (622)
Q Consensus 61 v~i~TlGC~~N~~Dse~m~-----~~L~~~G~~~v~~~~~ADlviINT--~~~~~~ii-~~~k~-~~~~--VVVgGC~aq 129 (622)
+|+.+||+. =-|.|.++ -.++..|+..+..+..||+++|+. ..++...+ +.+++ ..++ |.+|-|...
T Consensus 30 lw~~~~~t~--cC~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllVtG~Vt~km~~~l~~~y~qmPePK~VIA~GaCA~s 107 (189)
T PRK14813 30 LWPMGFGLA--CCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNC 107 (189)
T ss_pred CceeeeCcc--cHHHHHHHhcccCCCHHHcCCeecCCcccceEEEEeccCchhhHHHHHHHHHhCCCCCEEEEecccccC
Confidence 344444443 24555544 356778999999999999999998 33333333 33333 2344 335667644
No 205
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=71.32 E-value=10 Score=38.30 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC--CcEEEEccc
Q 007001 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK--KPLVVAGCV 127 (622)
Q Consensus 76 e~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~--~~VVVgGC~ 127 (622)
..++..|+..||++++- ...||+|.++. ...++++++.+++.+ .+|++||-.
T Consensus 106 ~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 106 NLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred HHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChh
Confidence 35667888999998653 45799999987 566777888887765 579999943
No 206
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=71.30 E-value=94 Score=35.48 Aligned_cols=146 Identities=12% Similarity=-0.056 Sum_probs=80.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-.+.+.++-++-++.|.+.|++.|... ++..+. .+ .+.++.+.+..+ ......+...++..+. ...+
T Consensus 17 g~~~s~e~K~~ia~~L~~~GV~~IEvG---~p~~s~---~d-~e~v~~i~~~~~--~~~i~al~r~~~~did----~a~~ 83 (494)
T TIGR00973 17 GASLTVEEKLQIALALERLGVDIIEAG---FPVSSP---GD-FEAVQRIARTVK--NPRVCGLARCVEKDID----AAAE 83 (494)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEE---CCCCCH---HH-HHHHHHHHHhCC--CCEEEEEcCCCHHhHH----HHHH
Confidence 457899999999999999999999864 222221 11 344566655433 2222222222333332 2222
Q ss_pred HHhCCCCceeecccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~v-Lk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.+...+ ...+|+-+ +.|+-- .+.+++. ...+.+.+.++.+++. |..+..+..-+... +.+.+.+.++.+.+.
T Consensus 84 al~~~~-~~~v~i~~-~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~Ed~~r~-d~~~l~~~~~~~~~~ 158 (494)
T TIGR00973 84 ALKPAE-KFRIHTFI-ATSPIHLEHKLKMTRDEVLERAVGMVKYAKNF--TDDVEFSCEDAGRT-EIPFLARIVEAAINA 158 (494)
T ss_pred hccccC-CCEEEEEE-ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEcCCCCCC-CHHHHHHHHHHHHHc
Confidence 222212 35666665 444444 3455543 3345566788888888 76554444433322 355666777777777
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 159 Ga~~i~l 165 (494)
T TIGR00973 159 GATTINI 165 (494)
T ss_pred CCCEEEe
Confidence 8775543
No 207
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=70.88 E-value=10 Score=37.64 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC----CcEEEEccccccc
Q 007001 75 SEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK----KPLVVAGCVPQGS 131 (622)
Q Consensus 75 se~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~----~~VVVgGC~aq~~ 131 (622)
--.+...|+..||++++- ...+|+|.++. ...++++++.+++.+ .+|+|||-.. .
T Consensus 101 ~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~ 178 (197)
T TIGR02370 101 KNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPV--T 178 (197)
T ss_pred HHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhc--C
Confidence 345677889999998742 46799999987 556777888887763 4799999554 3
Q ss_pred hhh-hcccccE
Q 007001 132 RDL-KELEGVS 141 (622)
Q Consensus 132 pe~-~~~~~d~ 141 (622)
+++ .++.+|.
T Consensus 179 ~~~~~~~gad~ 189 (197)
T TIGR02370 179 QDWADKIGADV 189 (197)
T ss_pred HHHHHHhCCcE
Confidence 454 3444443
No 208
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=70.26 E-value=5.9 Score=37.61 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCcEEEEec----hHHHHHHHHHHhcCCCcEEEEccccccchh-hhcccccEEEcCC
Q 007001 94 EEADIWLINT----QSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQ 146 (622)
Q Consensus 94 ~~ADlviINT----~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe-~~~~~~d~VvG~~ 146 (622)
++||+++|+. ...+..+++..+ .++.+++.|+-++..|+ +.....+.+-|..
T Consensus 61 ~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~ 117 (147)
T PF04016_consen 61 PWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSR 117 (147)
T ss_dssp GG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEE
T ss_pred ccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEE
Confidence 4699999988 677888888877 46789999999999997 4565666655443
No 209
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=69.57 E-value=1.3e+02 Score=34.67 Aligned_cols=150 Identities=17% Similarity=0.035 Sum_probs=82.0
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh-CCCCCceeEEEeecCCcchhH-HHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILE-HLKEI 288 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~-l~~~~~~~iri~~~~p~~i~~-~l~el 288 (622)
-.+.+.++.++-++.|.+.|+++|...- .....+ -.+.++++.+. +. +.....+.......+.. ....+
T Consensus 21 g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~---p~as~~----d~~~~~~i~~~~l~--~~~i~~~~~~~~~~i~~~~d~~~ 91 (524)
T PRK12344 21 GISFSVEDKLRIARKLDELGVDYIEGGW---PGSNPK----DTEFFKRAKELKLK--HAKLAAFGSTRRAGVSAEEDPNL 91 (524)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcC---CcCChh----HHHHHHHHHHhCCC--CcEEEEEeeccccCCCcccHHHH
Confidence 3678999999999999999999998742 111111 13455666542 11 12222222222222211 00112
Q ss_pred HHHHhCCCCceeecccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC--CCHHHHHHHHHHH
Q 007001 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPG--ETDEDFNQTVNLI 364 (622)
Q Consensus 289 ~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG--ETeedf~eTl~fl 364 (622)
..+... + ...+|+-+-+-+-...+.+|+. ...+.+.+.++.+++. |..+..+.+.-+.+ .+.+-+.+.++.+
T Consensus 92 e~~~~~-g-~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~e~~~Da~r~d~~~l~~~~~~~ 167 (524)
T PRK12344 92 QALLDA-G-TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAH--GREVIFDAEHFFDGYKANPEYALATLKAA 167 (524)
T ss_pred HHHHhC-C-CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEccccccccccCCHHHHHHHHHHH
Confidence 333322 2 4667777643333333555543 4567778888899998 87665433311111 2345556677777
Q ss_pred HhcCCCeEE
Q 007001 365 KEYKFPQVH 373 (622)
Q Consensus 365 ~el~~d~v~ 373 (622)
.+.+.+.+.
T Consensus 168 ~~~Gad~i~ 176 (524)
T PRK12344 168 AEAGADWVV 176 (524)
T ss_pred HhCCCCeEE
Confidence 888888765
No 210
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=69.06 E-value=10 Score=38.40 Aligned_cols=69 Identities=14% Similarity=0.306 Sum_probs=41.0
Q ss_pred EEEEEecccccchhHHHHHHH-----HHHhcCCeeeCCCCCCcEEEEec--hHHHHHHHHHHhc--CCCc--EEEEcccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALTDNSEEADIWLINT--QSAMDTLIAKCKS--AKKP--LVVAGCVP 128 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~-----~L~~~G~~~v~~~~~ADlviINT--~~~~~~ii~~~k~--~~~~--VVVgGC~a 128 (622)
.+|+.++|..= -|.|.++- .|+..|+..+..+..||+++|.. -.++...++++.+ ..++ |.+|-|..
T Consensus 33 Slw~~~~g~sC--C~iE~~a~~~p~yDleRfGi~~~aSPRhADvliVtG~VT~km~~~L~rlyeqmPePK~VIA~GaCA~ 110 (225)
T CHL00023 33 SLWPLLYGTSC--CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTI 110 (225)
T ss_pred CcccccCCcch--HHHHHHHhCCCccCHHHcCCeecCCcccceEEEEecCCccccHHHHHHHHHhcCCCCeEEEEccccc
Confidence 34444444322 77777663 45678999999999999999988 3333333333221 2334 33666755
Q ss_pred cc
Q 007001 129 QG 130 (622)
Q Consensus 129 q~ 130 (622)
..
T Consensus 111 sG 112 (225)
T CHL00023 111 TG 112 (225)
T ss_pred cC
Confidence 43
No 211
>PRK01254 hypothetical protein; Provisional
Probab=68.63 E-value=22 Score=41.76 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=39.9
Q ss_pred HHHHHHHHHhc--CCCcEEEEccccccc------------hh--hhcccccE-EEcCCchHHHHHHHHHHhcCCce
Q 007001 106 AMDTLIAKCKS--AKKPLVVAGCVPQGS------------RD--LKELEGVS-IVGVQQIDRVVEVVEETLKGHEV 164 (622)
Q Consensus 106 ~~~~ii~~~k~--~~~~VVVgGC~aq~~------------pe--~~~~~~d~-VvG~~~~~~l~ell~~~~~g~~~ 164 (622)
+.....+.+|+ .+.+||+||.+|+.. +. +..-.+|. |.|.+| ..++++.+....|...
T Consensus 135 A~ivy~~~~r~~f~~~pvilGGieaSlrR~aHYDyWsdkvr~sil~d~~aD~lvyGmgE-~~i~e~a~~l~~g~~~ 209 (707)
T PRK01254 135 ATLVYTQRCKEAYKDVPVILGGIEASLRRIAHYDYWSDKVRRSVLVDAKADILMYGNAE-RPLVEVAHRLAMGEPI 209 (707)
T ss_pred hHHHHHHHHHHHCCCCCEEeccccHHhhhhhhcchhhcccchhhcccCCCCEEEECccH-HHHHHHHHHHHcCCCh
Confidence 33445566666 467899999999976 32 22335675 778887 5799998887777643
No 212
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=67.96 E-value=1.5e+02 Score=30.51 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeec-----CCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSE-----DTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~-----d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 286 (622)
...+.++.++-++.|.+.|+..|.+... ..+.++.. ...-.+.++.+.+..+ ...+... +.+.... .+
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~---~~~~~~~-~~~~~~~--~~ 89 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALK---QAKLGVL-LLPGIGT--VD 89 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhcc---CCEEEEE-ecCCccC--HH
Confidence 4578999999999999999999887621 11111111 1223567777766543 2333322 2221111 12
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 366 (622)
.+......+ ...+.+.+ +.|+ ...+.+.++.+++. |+.+...++-.+. -+++.+.+.++.+.+
T Consensus 90 ~i~~a~~~g--~~~iri~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (263)
T cd07943 90 DLKMAADLG--VDVVRVAT-HCTE-----------ADVSEQHIGAARKL--GMDVVGFLMMSHM-ASPEELAEQAKLMES 152 (263)
T ss_pred HHHHHHHcC--CCEEEEEe-chhh-----------HHHHHHHHHHHHHC--CCeEEEEEEeccC-CCHHHHHHHHHHHHH
Confidence 233333332 45666544 3343 23678899999999 9998888877753 578889999999999
Q ss_pred cCCCeEE
Q 007001 367 YKFPQVH 373 (622)
Q Consensus 367 l~~d~v~ 373 (622)
.+.+.+.
T Consensus 153 ~G~d~i~ 159 (263)
T cd07943 153 YGADCVY 159 (263)
T ss_pred cCCCEEE
Confidence 9988754
No 213
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=67.96 E-value=2.2e+02 Score=33.44 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~--yg~d~~~~l~eLL~~l~~~l~ 264 (622)
..+.++.+.-++.|.+.|+..|-..|.-++. |+. .+.+-.+.|+.+.+.++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~-~~e~p~e~lr~l~~~~~ 75 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRF-LGEDPWERLRELKKAMP 75 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccc-cCCCHHHHHHHHHHhCC
Confidence 4577888888888888899999887543222 111 12233567777776654
No 214
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=67.21 E-value=11 Score=37.35 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=36.2
Q ss_pred hHHHHHHHH-----HHhcCCeeeCCCCCCcEEEEec--hHHHHHHHHHHhcC--CCc--EEEEcccccc
Q 007001 73 SDSEYMAGQ-----LSAFGYALTDNSEEADIWLINT--QSAMDTLIAKCKSA--KKP--LVVAGCVPQG 130 (622)
Q Consensus 73 ~Dse~m~~~-----L~~~G~~~v~~~~~ADlviINT--~~~~~~ii~~~k~~--~~~--VVVgGC~aq~ 130 (622)
-|.|.+... ++..|...+..+.+||+.+|.. ..++...++++.+. +++ |.+|-|....
T Consensus 47 C~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV~G~vt~~~~~~l~~~~e~mp~pk~VIA~GaCA~~G 115 (183)
T PRK06411 47 CAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQMPEPKWVISMGSCANSG 115 (183)
T ss_pred hHHHHHHccCccccHHHhCccccCCCCceeEEEEEeCCCccchHHHHHHHHHcCcCCeEEEEecccccC
Confidence 788877653 3456777788899999999988 22233344443332 333 4467786553
No 215
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=65.86 E-value=1.8e+02 Score=30.72 Aligned_cols=138 Identities=15% Similarity=0.192 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CC---CHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~---~~---~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 285 (622)
+..+++.++++++.+.+.|+.-|-+.|+-+.. |.+. .. ++..+++.+.+.. ...+.+.+.+|..+..
T Consensus 33 ~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-g~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISIDT~~~~va~~-- 105 (282)
T PRK11613 33 THNSLIDAVKHANLMINAGATIIDVGGESTRP-GAAEVSVEEELDRVIPVVEAIAQRF----EVWISVDTSKPEVIRE-- 105 (282)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEECCCHHHHHH--
Confidence 34689999999999999999988887764422 3221 11 2444555554322 3457777666543221
Q ss_pred HHHHHHHhC-CCCceeecccCCCCCHHHHHhhcC-------------------CCC--------HHHHHHHHHHHHHhCC
Q 007001 286 KEIAEVLRH-PCVYSFLHVPVQSGSDAVLSAMNR-------------------EYT--------LSDFRTVVDTLIELVP 337 (622)
Q Consensus 286 ~el~~l~~~-~~v~~~l~IGlQSgsd~vLk~MnR-------------------~~t--------~e~~~~~I~~lr~~~p 337 (622)
.++. ..+.+-+. |+. ++++++.+.+ ... .+.+.+.++.+.++
T Consensus 106 -----AL~~GadiINDI~-g~~--d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~-- 175 (282)
T PRK11613 106 -----SAKAGAHIINDIR-SLS--EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAA-- 175 (282)
T ss_pred -----HHHcCCCEEEECC-CCC--CHHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHc--
Confidence 1111 11223321 332 3343332211 000 14556777888888
Q ss_pred CC---EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 338 GM---QIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 338 gi---~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
|+ .+-.|=-+|| +.|.++=.+.++-+..+
T Consensus 176 GI~~~~IilDPGiGF-~k~~~~n~~ll~~l~~l 207 (282)
T PRK11613 176 GIAKEKLLLDPGFGF-GKNLSHNYQLLARLAEF 207 (282)
T ss_pred CCChhhEEEeCCCCc-CCCHHHHHHHHHHHHHH
Confidence 87 6777888899 66766555555555444
No 216
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=64.18 E-value=43 Score=37.45 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=42.8
Q ss_pred EEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeecccccc
Q 007001 420 VERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVDD 483 (622)
Q Consensus 420 ~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~~~~~ 483 (622)
.+++-|+..+.+| .-+||..+ ..|+|+ ...+|+.|.|+|++..+....|++++..+....
T Consensus 15 ~~~l~i~~l~~~G-~Gv~~~~~-~~vfV~--~~lPGe~v~v~i~~~~~~~~~~~~~~vl~~sp~ 74 (443)
T PRK13168 15 IITVTIESLDHDG-RGVARHNG-KTVFIE--GALPGERVEVQVTEDKKQYARAKVVRILKPSPE 74 (443)
T ss_pred EEEEEEEEcCCCC-ceEEEECC-EEEEeC--CCCCCCEEEEEEEEecCcEEEEEEEEEecCCcc
Confidence 3456677776555 44688643 577775 357899999999998877889998877655433
No 217
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=63.93 E-value=15 Score=36.14 Aligned_cols=69 Identities=17% Similarity=0.354 Sum_probs=40.3
Q ss_pred EEEEEecccccchhHHHHHHH-----HHHhcCCeee-CCCCCCcEEEEec--hHHHHHHHHHHhc--CCCc--EEEEccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGYALT-DNSEEADIWLINT--QSAMDTLIAKCKS--AKKP--LVVAGCV 127 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~-----~L~~~G~~~v-~~~~~ADlviINT--~~~~~~ii~~~k~--~~~~--VVVgGC~ 127 (622)
.+++.++||.= -|.|.++- .++..|+..+ ..+..||+++|.. ...+...++++.+ ..++ |.+|.|.
T Consensus 34 Slw~~~~~~sC--C~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillVtG~VT~~m~~~l~r~ye~~p~pK~VIAvGsCA 111 (183)
T PRK14815 34 SLWPMPMGLAC--CAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTVTYKMALAVRRIYDQMPEPKWVIAMGACA 111 (183)
T ss_pred CccceeEccch--HHHHHHHhcCccccHHHhCcccCCCCCccccEEEEeCcCchhhHHHHHHHHHhCCCCCEEEEecccc
Confidence 45555555532 77777653 3456787654 7899999999988 3333333333322 2344 3366675
Q ss_pred ccc
Q 007001 128 PQG 130 (622)
Q Consensus 128 aq~ 130 (622)
...
T Consensus 112 ~~G 114 (183)
T PRK14815 112 SSG 114 (183)
T ss_pred ccC
Confidence 543
No 218
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=63.53 E-value=2.6e+02 Score=32.72 Aligned_cols=52 Identities=13% Similarity=0.012 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg-~d~~~~l~eLL~~l~~~l~ 264 (622)
..+.++.+.-+..|.+.|+..|.+.|..++... +-...+..+.|+.+.+.++
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~ 74 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALP 74 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCC
Confidence 467788888888888888888887754332110 0011233455566655443
No 219
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.10 E-value=33 Score=38.49 Aligned_cols=58 Identities=22% Similarity=0.402 Sum_probs=45.0
Q ss_pred cEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeeccc
Q 007001 419 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQ 480 (622)
Q Consensus 419 ~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~~ 480 (622)
.+.++.|++...+| .-+|+.... .|+|++ .++|+.|.|++++..+..-.|+++...+.
T Consensus 3 ~~~~~~I~~l~~~G-~Gva~~~~~-~vfVp~--alPge~v~~~~~~~~~~~~~a~~~~i~~~ 60 (432)
T COG2265 3 QIIEVTIEDLGHNG-EGVARHDGK-VVFVPG--ALPGEEVEVRVTKVKKKYAEAKLVKVLEA 60 (432)
T ss_pred ceEEEEEEEcCCCC-eeEEEecCc-eEEeCC--CCCCcEEEEEEEeccccceeeEeeeeccC
Confidence 56788888876555 456777755 777764 47899999999999999999998876443
No 220
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=61.89 E-value=1.5e+02 Score=30.85 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-c--C---CCHHHHHHHHHHhCCCCCceeEEEeecCCcch
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-I--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d-~--~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i 281 (622)
.+..+++++++.++.+.+.|+.-|-+.+.-+.. +.+ . . .++..+++.+.+.. ...+.+.+.+|..+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~~~~~~----~~plsiDT~~~~vi 88 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRP-GADRVSPEEELNRVVPVIKALRDQP----DVPISVDTYRAEVA 88 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCCHHHH
Confidence 445688999999999999999998885543321 111 1 0 12445555554321 35677776666533
No 221
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=60.61 E-value=1.7e+02 Score=30.45 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---C---CCHHHHHHHHHHhCCCCCceeEEEeecCCcc
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPF 280 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~---~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~ 280 (622)
+..+.+.+++.++.+.+.|+.-|-+.+.-+.. |.+. . .++..+++.+.+.. ...+.+.+.+|..
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p-~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSIDT~~~~v 88 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRP-GADPVSVEEELERVIPVLEALRGEL----DVLISVDTFRAEV 88 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEeCCCHHH
Confidence 44689999999999999999988886543322 2111 1 13444556655421 3457777666653
No 222
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=60.43 E-value=20 Score=37.17 Aligned_cols=70 Identities=19% Similarity=0.399 Sum_probs=41.4
Q ss_pred cEEEEEecccccchhHHHHHHHH-----HHhcCCe-eeCCCCCCcEEEEec--hHHHH-HHHHHHhc-CCCc-E-EEEcc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINT--QSAMD-TLIAKCKS-AKKP-L-VVAGC 126 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~-----L~~~G~~-~v~~~~~ADlviINT--~~~~~-~ii~~~k~-~~~~-V-VVgGC 126 (622)
..+|+.++|| +=-|.|.++.. ++..|+. .+..+..||+.+|+. ...+. .+.+.++. ..++ | .+|-|
T Consensus 31 ~Slw~~~~gt--~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLVtG~VT~km~~~L~rlyeqmP~PK~VIAvGaC 108 (264)
T PRK14819 31 SSVWPMAFGL--ACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGAC 108 (264)
T ss_pred CCcceeeeCC--cccHHHHHHhccccccHHHhCcccccCCCCcceEEEEecCCchhhHHHHHHHHHhccCCCeEEEEccc
Confidence 3567777775 33777777654 3456764 578889999999988 22232 22232322 2344 3 36668
Q ss_pred cccc
Q 007001 127 VPQG 130 (622)
Q Consensus 127 ~aq~ 130 (622)
....
T Consensus 109 A~~G 112 (264)
T PRK14819 109 ATSG 112 (264)
T ss_pred cccC
Confidence 5543
No 223
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=58.85 E-value=3.5e+02 Score=31.61 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg-~d~~~~l~eLL~~l~~~l~ 264 (622)
..+.++.+.-++.|.+.|+..|-+.|.-++.-. +-...+-.+.++.+.+..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~ 69 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALP 69 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCC
Confidence 567888888888888899999988754333210 0011234566777765443
No 224
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=57.85 E-value=2.5e+02 Score=32.29 Aligned_cols=149 Identities=13% Similarity=0.019 Sum_probs=79.7
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCc----eeEEEeecCCcchhHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~----~~iri~~~~p~~i~~~l~ 286 (622)
-...+.++-++-++.|.+.|++.|.... ...+. .-.+.++.+.+....... ....+...... ..+.++
T Consensus 100 gv~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s~----~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId 171 (503)
T PLN03228 100 GGSLTPPQKLEIARQLAKLRVDIMEVGF---PGSSE----EEFEAVKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIE 171 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH----HHHHHHHHHHHhcccccccccccceEEeeeccc-CHhhHH
Confidence 4578999999999999999999988743 22222 123446666543210000 01122111111 111222
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH---HHHH
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED---FNQT 360 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeed---f~eT 360 (622)
...+.....+ ...+++-+ +.||.-+ ..+++. ...+.+.+.++.+++. |.. .+.+|.+..+..| +.+.
T Consensus 172 ~a~~a~~~a~-~~~V~i~i-~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~--G~~---~v~f~~EDa~Rtd~efl~~~ 244 (503)
T PLN03228 172 AAWEALKYAK-RPRILAFT-STSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL--GFH---DIQFGCEDGGRSDKEFLCKI 244 (503)
T ss_pred HHHHhhcccC-CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEeccccccccCHHHHHHH
Confidence 2222222212 34666655 4455444 455543 3456677888888888 753 3567776555433 3555
Q ss_pred HHHHHhcCCCeEEE
Q 007001 361 VNLIKEYKFPQVHI 374 (622)
Q Consensus 361 l~fl~el~~d~v~i 374 (622)
++.+.+.+.+.+.+
T Consensus 245 ~~~a~~~Gad~I~l 258 (503)
T PLN03228 245 LGEAIKAGATSVGI 258 (503)
T ss_pred HHHHHhcCCCEEEE
Confidence 56666777776543
No 225
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=57.32 E-value=1.5e+02 Score=31.43 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-ceeEEEeecCCcchhHH------HHHHH
Q 007001 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STMLRIGMTNPPFILEH------LKEIA 289 (622)
Q Consensus 217 e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~-~~~iri~~~~p~~i~~~------l~el~ 289 (622)
+.|-+.+..+.+.|..-|+|.|++..+|+ .++.+.+..+... ..-+.|. .|++.-+.. ---+.
T Consensus 98 ~~i~~~v~~~~~~g~~Pi~lGGdHsit~~---------~~~al~~~~~~~~~vgvi~~D-AH~D~~~~~~~~~~~g~~~~ 167 (307)
T TIGR01227 98 HEIAQTAAALLADHRVPVILGGGHSIAYA---------TFAALAQHYKGTTAIGVINFD-AHFDLRATEDGGPTSGTPFR 167 (307)
T ss_pred HHHHHHHHHHHhcCCeEEEECCcchhHHH---------HHHHHHHhcCCCCeEEEEEEc-cCcCCCCCCCCCCCCchHHH
Confidence 44555556677788888888888777764 2334443332001 2233333 233221110 01133
Q ss_pred HHHhCCC--CceeecccCCCCC--HHHHHhhcCC----CCHHHHHH-----HHHHHHHh---CCC--CEEEEEEE-----
Q 007001 290 EVLRHPC--VYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT-----VVDTLIEL---VPG--MQIATDII----- 346 (622)
Q Consensus 290 ~l~~~~~--v~~~l~IGlQSgs--d~vLk~MnR~----~t~e~~~~-----~I~~lr~~---~pg--i~i~td~I----- 346 (622)
.++.... ..+.+++|+++.+ ++-++.+++. ++.+++.+ +.+.++.. ... +.+..|.+
T Consensus 168 ~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDps~a 247 (307)
T TIGR01227 168 QILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDAAHA 247 (307)
T ss_pred HHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccChhhC
Confidence 3443221 1368999999984 4444444332 24455433 23333332 122 34445555
Q ss_pred --EcCC---CCCHHHHHHHHHHHHhc-CCCeEEEEEeeeCCC
Q 007001 347 --CGFP---GETDEDFNQTVNLIKEY-KFPQVHISQFYPRPG 382 (622)
Q Consensus 347 --vGfP---GETeedf~eTl~fl~el-~~d~v~i~~ysP~PG 382 (622)
+|.| |=|..++.+.++.+.+. ++-.+.+.-|+|...
T Consensus 248 Pgtg~p~pgGLt~~e~~~il~~l~~~~~vvg~DvvE~~P~~D 289 (307)
T TIGR01227 248 PGVSAPAPGGLYPDELLELVKRIAASDKVRGAEIAEVNPTLD 289 (307)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEEEEEECCCCC
Confidence 5666 67888888888887543 566777888888644
No 226
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=57.02 E-value=1.1e+02 Score=32.00 Aligned_cols=150 Identities=16% Similarity=0.235 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcch-------hHHHHH
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI-------LEHLKE 287 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i-------~~~l~e 287 (622)
.++.+.+-+..|.+.|++++.+..-++.. |. .+.+|.+.+.+.-. ....+.++ .|-.. .++.++
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiip-G~----Ey~~l~~~v~~~~~--~F~~i~~g--~PLL~~~g~~~~~~D~~~ 126 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIP-GE----EYEKLRATVEAYKH--DFKKIVLG--RPLLYTMGQENSPEDYEA 126 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCS-SH----HHHHHHHHHHHHCC--CSSEEEEE----SCSS-----SHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeC-cH----hHHHHHHHHHHhhc--cCCeEEec--ccccccccccCChHHHHH
Confidence 34555556666778999999998754432 33 35566666544221 33466665 34322 233344
Q ss_pred HHHHHhCCCCceeecccCCCCCHHHHHhhcCC--CCH-HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHH
Q 007001 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTL-SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLI 364 (622)
Q Consensus 288 l~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~--~t~-e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl 364 (622)
+.+.+... ++-.. .++.+=.|+-| +.. ..|...=..+++. +.-.+....+=|+|. +++.+..+
T Consensus 127 va~aL~~~-------~~~~~-~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~-~~~~v~vgtvEG~P~-----~~~vi~~L 192 (262)
T PF06180_consen 127 VAEALAEE-------FPKKR-KDEAVVLMGHGTPHPANAAYSALQAMLKKH-GYPNVFVGTVEGYPS-----LEDVIARL 192 (262)
T ss_dssp HHHHHHCC-------S-TT--TTEEEEEEE---SCHHHHHHHHHHHHHHCC-T-TTEEEEETTSSSB-----HHHHHHHH
T ss_pred HHHHHHHh-------ccccC-CCCEEEEEeCCCCCCccHHHHHHHHHHHhC-CCCeEEEEEeCCCCC-----HHHHHHHH
Confidence 44444321 11111 22223333333 222 2334443444444 213344455667774 78889999
Q ss_pred HhcCCCeEEEEEeeeCCCCcccc
Q 007001 365 KEYKFPQVHISQFYPRPGTPAAR 387 (622)
Q Consensus 365 ~el~~d~v~i~~ysP~PGTpa~~ 387 (622)
++.++..+.+.||+-..|.-+.+
T Consensus 193 ~~~g~k~V~L~PlMlVAGdHa~n 215 (262)
T PF06180_consen 193 KKKGIKKVHLIPLMLVAGDHAKN 215 (262)
T ss_dssp HHHT-SEEEEEEESSS--HHHHC
T ss_pred HhcCCCeEEEEecccccchhhhh
Confidence 99999999999999999987764
No 227
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=56.76 E-value=3.6e+02 Score=31.09 Aligned_cols=151 Identities=13% Similarity=0.020 Sum_probs=84.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeE-EEeec-CCcchhHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTML-RIGMT-NPPFILEHLKEI 288 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~i-ri~~~-~p~~i~~~l~el 288 (622)
-.+.++++-++-++.|.+.|+++|-.. ++..+.+ -.+.++++.+.-. ....+ .+... .++...+....+
T Consensus 17 g~~~s~eeKl~Ia~~L~~~GVd~IE~G---~p~~s~~----d~~~v~~i~~~~~--~~~~i~~~~r~~r~~~~~~~d~~~ 87 (526)
T TIGR00977 17 GVSFSLEDKIRIAERLDDLGIHYIEGG---WPGANPK----DVQFFWQLKEMNF--KNAKIVAFCSTRRPHKKVEEDKML 87 (526)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCChH----HHHHHHHHHHhCC--CCcEEEEEeeecCCCCCCchHHHH
Confidence 467899999999999999999999874 2222211 1345565654211 11222 22212 232111111112
Q ss_pred HHHHhCCCCceeecccCCCCCHHHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE---EcCCCCCHHHHHHHHHH
Q 007001 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDII---CGFPGETDEDFNQTVNL 363 (622)
Q Consensus 289 ~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~I---vGfPGETeedf~eTl~f 363 (622)
..+...+ ...+|+-+=+-+-.+...+++. ...+.+.+.++.+++. |..+..+.. -|+. -+.+.+.+.++.
T Consensus 88 ea~~~~~--~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~--g~~V~~~~e~f~D~~r-~~~~~l~~~~~~ 162 (526)
T TIGR00977 88 QALIKAE--TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ--GDEVIYDAEHFFDGYK-ANPEYALATLAT 162 (526)
T ss_pred HHHhcCC--CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeeeeeccc-CCHHHHHHHHHH
Confidence 3333322 4567776634333444555553 3556667778899998 776644333 3432 356777788888
Q ss_pred HHhcCCCeEEEE
Q 007001 364 IKEYKFPQVHIS 375 (622)
Q Consensus 364 l~el~~d~v~i~ 375 (622)
+.+.+.+.+.+.
T Consensus 163 a~~aGad~i~i~ 174 (526)
T TIGR00977 163 AQQAGADWLVLC 174 (526)
T ss_pred HHhCCCCeEEEe
Confidence 888888877654
No 228
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=56.55 E-value=69 Score=33.23 Aligned_cols=120 Identities=18% Similarity=0.119 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC------CcCCCHHHHHHHHHHhCCCCCceeEEEe---ecCCcch-
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR------DIGVNLPILLNAIVAELPPDGSTMLRIG---MTNPPFI- 281 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~------d~~~~l~eLL~~l~~~l~~~~~~~iri~---~~~p~~i- 281 (622)
|.++..++.+++..+.+.|++.|.++.+|....+. ....+-.+|++.+..... +...+... -.||..-
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~--~~~~igva~yPe~hp~~~~ 145 (274)
T cd00537 68 RDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENG--GGFSIGVAAYPEGHPEAPS 145 (274)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcC--CCCccccccCCCcCCCCCC
Confidence 34556899999999999999999998777665542 111345677777765321 11122221 1233211
Q ss_pred -hHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC
Q 007001 282 -LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE 352 (622)
Q Consensus 282 -~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGE 352 (622)
...++.|.+-...+ +.++ .. .=-|+.+.+.+.++.+++. |+. .-+|.|+..=
T Consensus 146 ~~~~~~~L~~Ki~aG--A~f~-----------iT--Q~~fd~~~~~~~~~~~~~~--gi~--vPIi~GI~p~ 198 (274)
T cd00537 146 LEEDIKRLKRKVDAG--ADFI-----------IT--QLFFDNDAFLRFVDRCRAA--GIT--VPIIPGIMPL 198 (274)
T ss_pred HHHHHHHHHHHHHCC--CCEE-----------ee--cccccHHHHHHHHHHHHHc--CCC--CCEEeecccc
Confidence 11122222111111 1111 11 1135667888888888888 763 3677787554
No 229
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=56.38 E-value=1.7e+02 Score=30.06 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhC
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 294 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 294 (622)
++++..++++.+.+.|++.+-+=- + .+. ..-.+.++++.+.++ ....+++. .|-..-.+...++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKv---g---~~~-~~d~~~v~~vr~~~g--~~~~l~vD-an~~~~~~~a~~~~~~l~~ 154 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKV---G---RDP-ARDVAVVAALREAVG--DDAELRVD-ANRGWTPKQAIRALRALED 154 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEec---C---CCH-HHHHHHHHHHHHhcC--CCCEEEEe-CCCCcCHHHHHHHHHHHHh
Confidence 578899999999999999877631 1 110 122577888887765 45677776 3332222222233333433
Q ss_pred CCCceeecccCCCCCHHHHHhhcC
Q 007001 295 PCVYSFLHVPVQSGSDAVLSAMNR 318 (622)
Q Consensus 295 ~~v~~~l~IGlQSgsd~vLk~MnR 318 (622)
.+ ..++.-|+...+.+.++.+.+
T Consensus 155 ~~-i~~iEeP~~~~d~~~~~~l~~ 177 (265)
T cd03315 155 LG-LDYVEQPLPADDLEGRAALAR 177 (265)
T ss_pred cC-CCEEECCCCcccHHHHHHHHh
Confidence 33 467888887766666655544
No 230
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=55.87 E-value=1.2e+02 Score=33.89 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHhCCC--CCceeEEEeecCCcchhHHHHHHHHHHhCC
Q 007001 251 NLPILLNAIVAELPP--DGSTMLRIGMTNPPFILEHLKEIAEVLRHP 295 (622)
Q Consensus 251 ~l~eLL~~l~~~l~~--~~~~~iri~~~~p~~i~~~l~el~~l~~~~ 295 (622)
...++++.+.+.... .....+.++.-.+....+.+.++.+.++..
T Consensus 55 t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~ 101 (404)
T TIGR03278 55 PPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDL 101 (404)
T ss_pred CHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhC
Confidence 456666666553221 133567776555555556666666666543
No 231
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=54.35 E-value=2.2e+02 Score=30.40 Aligned_cols=138 Identities=14% Similarity=0.236 Sum_probs=77.0
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCC----CcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCC
Q 007001 220 VGRVRTVIADGVKEVWLSSEDTGAYGR----DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHP 295 (622)
Q Consensus 220 v~Ei~~L~~~GvkeI~L~g~d~~~yg~----d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~ 295 (622)
++.++.+++.|++.+.|+=-.-+.++. +....|.++=+++.+++.. -.-.+-++-+... ...++.++...|
T Consensus 116 ~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~GLt~~G~~vv~~mn~-lGmiiDvSH~s~~----~~~dv~~~s~~P 190 (309)
T cd01301 116 LALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGGLTPFGKELVREMNR-LGIIIDLSHLSER----TFWDVLDISNAP 190 (309)
T ss_pred HHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCCCCHHHHHHHHHHHH-cCCEEEcCCCCHH----HHHHHHHhcCCC
Confidence 678889999999999998433344432 1112343433333333210 0122333322222 222344444444
Q ss_pred CCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC----CCCHHHHHHHHHHHHhc-CCC
Q 007001 296 CVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP----GETDEDFNQTVNLIKEY-KFP 370 (622)
Q Consensus 296 ~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfP----GETeedf~eTl~fl~el-~~d 370 (622)
-+ +=|.+.+.+..-.|..+-++++ .+.+. |=.+...+.-.|- .-|.+++.+-++.+.++ +.+
T Consensus 191 vi-------aSHsn~ral~~h~RNltD~~i~----~ia~~--GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~d 257 (309)
T cd01301 191 VI-------ASHSNARALCDHPRNLTDAQLK----AIAET--GGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGID 257 (309)
T ss_pred EE-------EeccChHHhcCCCCCCCHHHHH----HHHHc--CCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 22 2245555666666777766644 55566 6566666666663 56889999999887765 778
Q ss_pred eEEEE
Q 007001 371 QVHIS 375 (622)
Q Consensus 371 ~v~i~ 375 (622)
++.+.
T Consensus 258 hVgiG 262 (309)
T cd01301 258 HVGLG 262 (309)
T ss_pred eEEEC
Confidence 77763
No 232
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=52.60 E-value=3.1e+02 Score=30.93 Aligned_cols=155 Identities=13% Similarity=0.169 Sum_probs=95.4
Q ss_pred cccCccC-CCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecC
Q 007001 202 CKTKHAR-GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277 (622)
Q Consensus 202 C~ip~~r-G~~rsr~~e~Iv~Ei~~L~~~---GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~ 277 (622)
|-.+... |...--+.|+|-+-++.|..+ +...|.|+|+..+. ..+|.++++...+. +...+.+. +|
T Consensus 78 CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv-----r~DL~eiv~~a~e~----g~~hVqin-Tn 147 (475)
T COG1964 78 CFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL-----RDDLIEIIKIAREE----GYDHVQLN-TN 147 (475)
T ss_pred CcCchhhcCcccCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccc-----hhhHHHHHHHHhhc----CccEEEEc-cC
Confidence 5443322 444455678888888888775 56789999865443 24678888777653 44445443 33
Q ss_pred CcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC---CEEEEEEEEcCCCCCH
Q 007001 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG---MQIATDIICGFPGETD 354 (622)
Q Consensus 278 p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg---i~i~td~IvGfPGETe 354 (622)
--.+... .++..-+++++ .+.+.+.+.-.+++.+.++ .-++..+++.++++ | +.+..+++=|. ++
T Consensus 148 GirlA~~-~~~~~~l~~ag-~~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~--g~~svVLVptl~rgv---Nd 215 (475)
T COG1964 148 GIRLAFD-PEYVKKLREAG-VNTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKA--GLPSVVLVPTLIRGV---ND 215 (475)
T ss_pred ceeeccC-HHHHHHHHhcC-CcEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhc--CCCcEEEEeehhccc---Ch
Confidence 3222221 22333444555 6888898888888886655 33555699999998 5 44555565554 78
Q ss_pred HHHHHHHHHHHhcC--CCeEEEEEee
Q 007001 355 EDFNQTVNLIKEYK--FPQVHISQFY 378 (622)
Q Consensus 355 edf~eTl~fl~el~--~d~v~i~~ys 378 (622)
.+...-++|....- ...+++.+++
T Consensus 216 ~~lG~iirfa~~n~dvVrgVnfQPVs 241 (475)
T COG1964 216 HELGAIIRFALNNIDVVRGVNFQPVS 241 (475)
T ss_pred HHHHHHHHHHHhccccccccceEEEE
Confidence 88889999987542 2334444443
No 233
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=52.57 E-value=23 Score=35.11 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=38.3
Q ss_pred EEEEec--ccccchhHHHHHHH---HHHhcCCe-eeCCCCCCcEEEEec--hHHHHHHHHHHhcC--CCc--EEEEcccc
Q 007001 61 IYMKTF--GCSHNQSDSEYMAG---QLSAFGYA-LTDNSEEADIWLINT--QSAMDTLIAKCKSA--KKP--LVVAGCVP 128 (622)
Q Consensus 61 v~i~Tl--GC~~N~~Dse~m~~---~L~~~G~~-~v~~~~~ADlviINT--~~~~~~ii~~~k~~--~~~--VVVgGC~a 128 (622)
+|+.++ || +-.|.+.+.. .++..|+. .+..+..||+++|.. ...+...++++.+. .++ |.+|-|..
T Consensus 35 lw~~~~~~~C--C~iE~~~~~~~~yD~eRfGi~~~~~sPR~ADvllVtG~VT~~m~~~l~~~yeqmp~pk~VIAvGsCA~ 112 (186)
T PRK14814 35 LWPYPFATAC--CGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACAS 112 (186)
T ss_pred CceeeeCCcc--HHHHHHHhcCccccHHHhCccccCCCcccceEEEEeccCchhhHHHHHHHHHhcCCCCeEEEeccccc
Confidence 444444 56 5555444332 34566774 578899999999988 33344444444332 233 44666765
Q ss_pred cc
Q 007001 129 QG 130 (622)
Q Consensus 129 q~ 130 (622)
..
T Consensus 113 ~G 114 (186)
T PRK14814 113 SG 114 (186)
T ss_pred cC
Confidence 43
No 234
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=52.41 E-value=3e+02 Score=28.89 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=20.5
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 313 LSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 313 Lk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
+++++.++|.++..+.++.+|+..++
T Consensus 69 ~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 69 LRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 56777888899999999999876444
No 235
>PRK08005 epimerase; Validated
Probab=52.35 E-value=2.6e+02 Score=28.19 Aligned_cols=135 Identities=8% Similarity=0.107 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEE--eecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWL--SSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L--~g~d~~~yg~d~~~~l-~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
+-++..+-+|++.+.+.|+..+++ .|.++ -... .+ ++.++.+.+... ....+.+...+|.... +.+.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~lHiDvMDG~F---VPN~--tfG~~~i~~l~~~t~--~~~DvHLMv~~P~~~i---~~~~ 78 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSLHLDIEDTSF---INNI--TFGMKTIQAVAQQTR--HPLSFHLMVSSPQRWL---PWLA 78 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEEEEeccCCCc---CCcc--ccCHHHHHHHHhcCC--CCeEEEeccCCHHHHH---HHHH
Confidence 456778889999999999887654 44333 1111 11 567788876432 2356666656775332 2232
Q ss_pred HHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 369 (622)
..+ +..+.+-+|+.. +..+.++.+|+. |+.. .+-+. |+-..+.++..+. . +
T Consensus 79 ---~~g--ad~It~H~Ea~~--------------~~~~~l~~Ik~~--G~k~--GlAln-P~Tp~~~i~~~l~---~--v 129 (210)
T PRK08005 79 ---AIR--PGWIFIHAESVQ--------------NPSEILADIRAI--GAKA--GLALN-PATPLLPYRYLAL---Q--L 129 (210)
T ss_pred ---HhC--CCEEEEcccCcc--------------CHHHHHHHHHHc--CCcE--EEEEC-CCCCHHHHHHHHH---h--c
Confidence 222 567778888642 245688899999 8765 56665 7766666655444 2 3
Q ss_pred CeEEEEEeeeCCCCccccC
Q 007001 370 PQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 370 d~v~i~~ysP~PGTpa~~~ 388 (622)
|. +-.++..||..-..+
T Consensus 130 D~--VlvMsV~PGf~GQ~f 146 (210)
T PRK08005 130 DA--LMIMTSEPDGRGQQF 146 (210)
T ss_pred CE--EEEEEecCCCcccee
Confidence 43 344566788654443
No 236
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=51.23 E-value=1.1e+02 Score=28.52 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 320 YTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
.+.+.+.+.++.++++ |+. ..-+|+|- +.-.++|+.+..+.+++++++.++ -|||+.
T Consensus 62 ~~~~~~~~~~~~l~~~--gl~-~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf------~pgt~~ 119 (128)
T cd02072 62 HGEIDCKGLREKCDEA--GLK-DILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVF------APGTPP 119 (128)
T ss_pred CCHHHHHHHHHHHHHC--CCC-CCeEEEECCCCCChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 4567788999999998 763 24567775 345778888899999999998653 367764
No 237
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=50.44 E-value=23 Score=33.33 Aligned_cols=58 Identities=22% Similarity=0.427 Sum_probs=36.2
Q ss_pred EecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec--hHHHHHHHHHH-hc-CCCcEE--EEcccc
Q 007001 64 KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--QSAMDTLIAKC-KS-AKKPLV--VAGCVP 128 (622)
Q Consensus 64 ~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT--~~~~~~ii~~~-k~-~~~~VV--VgGC~a 128 (622)
+-+.|---.||.| +.|...+.++..||+.+++. ...++.-++++ .+ ..+|+| +|-|.-
T Consensus 25 Ei~a~~sP~YDaE-------rfgI~~v~sPRhADiLlVTG~vT~~~~e~lkk~Yea~PePKiViA~GaCa~ 88 (148)
T COG3260 25 EILAALSPRYDAE-------RFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEAMPEPKIVIAVGACAL 88 (148)
T ss_pred EEeeccCcccchH-------HheeEEeCCCccccEEEEeccccHHHHHHHHHHHHhCCCCcEEEEEccccc
Confidence 3334455566665 46889999999999999988 45555544443 22 234544 455643
No 238
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=50.40 E-value=3e+02 Score=28.24 Aligned_cols=130 Identities=12% Similarity=0.189 Sum_probs=86.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
.-.+.+.|..-++.....|...+.+..+ ++|++..... ....+.++.++|..+..-.
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIAad-------------p~LV~~~~~~----s~lPICVSaVep~~f~~aV------ 78 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIAAD-------------PELVKLAKSL----SNLPICVSAVEPELFVAAV------ 78 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEecCC-------------HHHHHHHHHh----CCCCeEeecCCHHHHHHHH------
Confidence 3456777777777666667776655431 5666665542 2345778888886554322
Q ss_pred HhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCe
Q 007001 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 371 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~ 371 (622)
..- ... +|=|+=+.+-.-+|.++.+++++..++.|+..|++.++.++=--+|= ++=.+....+.+++.|.
T Consensus 79 ~AG---Adl----iEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~l---d~Qv~LA~~L~~~GaDi 148 (242)
T PF04481_consen 79 KAG---ADL----IEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPL---DQQVQLAEDLVKAGADI 148 (242)
T ss_pred HhC---CCE----EEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccH---HHHHHHHHHHHHhCCcE
Confidence 111 223 45567777777899999999999999999999999888776555542 33334555667778887
Q ss_pred EEE
Q 007001 372 VHI 374 (622)
Q Consensus 372 v~i 374 (622)
++.
T Consensus 149 IQT 151 (242)
T PF04481_consen 149 IQT 151 (242)
T ss_pred EEc
Confidence 654
No 239
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=29 Score=35.14 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=39.2
Q ss_pred CCcEEEEec----hHHHHHHHHHHhcCCCcEEEEccccccchh-hhcccccEEEcCCchH
Q 007001 95 EADIWLINT----QSAMDTLIAKCKSAKKPLVVAGCVPQGSRD-LKELEGVSIVGVQQID 149 (622)
Q Consensus 95 ~ADlviINT----~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe-~~~~~~d~VvG~~~~~ 149 (622)
+.|+++++. ......++.+++. .+-||+.|+-+|..|| +....++++.|..-.+
T Consensus 164 ~~Dvii~SaStlvN~T~d~~Ld~ak~-ak~vvl~GPTa~l~pe~f~~~gvt~iag~kIiD 222 (250)
T COG2014 164 EVDVIIASASTLVNGTLDMILDRAKK-AKLVVLTGPTAQLLPEFFKGTGVTHIAGTKIID 222 (250)
T ss_pred cccEEEEechhhhcCcHHHHHhhhcc-CcEEEEeCCCcccchhHHhccCcceEEeeeecC
Confidence 579999877 4556667776653 3468899999999999 4566667787776543
No 240
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=49.14 E-value=1.6e+02 Score=30.66 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-Cc---CCCHHHHHHHHHHhCCCCCceeEEEeecCCc----c--h
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DI---GVNLPILLNAIVAELPPDGSTMLRIGMTNPP----F--I 281 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~-d~---~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~----~--i 281 (622)
|.++..++.+.+..+.+.|++.|..+.+|....+. .. -..-.+|++.+.+.. +...+-.. .+|. . .
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~---~~f~ig~a-~~Peghp~~~~~ 143 (272)
T TIGR00676 68 IGATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEF---GDFDIGVA-AYPEKHPEAPNL 143 (272)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhc---CCeeEEEE-eCCCCCCCCCCH
Confidence 34688899999999999999999855555554331 10 124567787776532 22233222 3443 1 1
Q ss_pred hHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHH
Q 007001 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTV 361 (622)
Q Consensus 282 ~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl 361 (622)
...++.+.+-...+ +.++ .. .=-|+.+.+.+.++.+++. |+.+ =++.|+..=+ ....++
T Consensus 144 ~~~~~~L~~K~~aG--A~f~-----------iT--Q~~fd~~~~~~~~~~~~~~--gi~~--PIi~Gi~p~~--s~k~~~ 202 (272)
T TIGR00676 144 EEDIENLKRKVDAG--ADYA-----------IT--QLFFDNDDYYRFVDRCRAA--GIDV--PIIPGIMPIT--NFKQLL 202 (272)
T ss_pred HHHHHHHHHHHHcC--CCeE-----------ee--ccccCHHHHHHHHHHHHHc--CCCC--CEecccCCcC--CHHHHH
Confidence 11222222211111 1111 11 1236778888888888888 7654 5777875432 233345
Q ss_pred HHHH
Q 007001 362 NLIK 365 (622)
Q Consensus 362 ~fl~ 365 (622)
.|+.
T Consensus 203 ~~~~ 206 (272)
T TIGR00676 203 RFAE 206 (272)
T ss_pred HHHh
Confidence 5554
No 241
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.26 E-value=84 Score=30.79 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 007001 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 376 (622)
Q Consensus 322 ~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ 376 (622)
.+...++.+.+++.+||+.+... .|+= ++++-++.++.+.+.++|.+.+..
T Consensus 58 ~~v~~~~~~~l~~~yP~l~i~g~--~g~f--~~~~~~~i~~~I~~s~~dil~Vgl 108 (177)
T TIGR00696 58 PDVLQQLKVKLIKEYPKLKIVGA--FGPL--EPEERKAALAKIARSGAGIVFVGL 108 (177)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEE--CCCC--ChHHHHHHHHHHHHcCCCEEEEEc
Confidence 44556788889999999998764 5543 456667889999999999887765
No 242
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=48.20 E-value=4.1e+02 Score=30.04 Aligned_cols=117 Identities=14% Similarity=0.155 Sum_probs=68.6
Q ss_pred eeecccCCCCCHHHHHhhcCCCCH---HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 007001 299 SFLHVPVQSGSDAVLSAMNREYTL---SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375 (622)
Q Consensus 299 ~~l~IGlQSgsd~vLk~MnR~~t~---e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~ 375 (622)
..+...+...+...|+...|+.+. |.+++.++.+++.-..-.+..+++=|+ +-+|..+-.+++..-.++++-|-
T Consensus 404 tqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk~K~qrtvyRlTlVkg~---n~dd~~Ayfnlv~rglp~fieVk 480 (601)
T KOG1160|consen 404 TQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALKKKQQRTVYRLTLVKGW---NSDDLPAYFNLVSRGLPDFIEVK 480 (601)
T ss_pred heeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHHHhhcceEEEEEEeccc---cccccHHHHHHHhccCCceEEEe
Confidence 455566777888899999999754 455555555555422234555555554 56677888888888888887774
Q ss_pred EeeeCCCCccccC--CCCC-HHHHHHHHHHHHHHHHHhhhhccCCC
Q 007001 376 QFYPRPGTPAARM--KKVP-SAVVKKRSRELTSVFEAFTPYLGMEG 418 (622)
Q Consensus 376 ~ysP~PGTpa~~~--~~v~-~~~~k~R~~~L~~l~~~~~~~~~~vG 418 (622)
--+---.+.++++ ..+| .+...+-..+|.++...++..-.+-|
T Consensus 481 Gvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL~~l~~~ye~a~ehah 526 (601)
T KOG1160|consen 481 GVTYCGESELSNLTMTNVPWHEEVVEFVFELVDLLQEYEIACEHAH 526 (601)
T ss_pred ceeEecccccCcccccCccHHHHHHHHHHHHHHhhhhhhhhhcccC
Confidence 4333323333333 3455 33444555556555554544444444
No 243
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=47.04 E-value=2.9e+02 Score=27.70 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=69.8
Q ss_pred HHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCce
Q 007001 220 VGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYS 299 (622)
Q Consensus 220 v~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~ 299 (622)
++-++.+.+.|++++++++-+....+.. .+ .++++++.+... ..+.++ -.+..+. ++..+... + +.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~~~~~~~--~n-~~~~~~i~~~~~----~pv~~~-ggi~~~~----d~~~~~~~-G-~~ 98 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDASKRGRE--PL-FELISNLAEECF----MPLTVG-GGIRSLE----DAKKLLSL-G-AD 98 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcccCCC--CC-HHHHHHHHHhCC----CCEEEE-CCCCCHH----HHHHHHHc-C-CC
Confidence 3344455578999999997665433322 23 577888876542 223333 2333222 23333333 2 56
Q ss_pred eecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC--CEEEEEEEEcCCC------------CCHHHHHHHHHHHH
Q 007001 300 FLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG--MQIATDIICGFPG------------ETDEDFNQTVNLIK 365 (622)
Q Consensus 300 ~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg--i~i~td~IvGfPG------------ETeedf~eTl~fl~ 365 (622)
.+.+|-.. ++ +.+. +..+.+.++. +.+..|+--|+++ ++..+..+.++.+.
T Consensus 99 ~vilg~~~-----l~------~~~~----~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (232)
T TIGR03572 99 KVSINTAA-----LE------NPDL----IEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAE 163 (232)
T ss_pred EEEEChhH-----hc------CHHH----HHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHH
Confidence 77777222 11 1222 3333333322 5566776554221 23445566777788
Q ss_pred hcCCCeEEEEEeee
Q 007001 366 EYKFPQVHISQFYP 379 (622)
Q Consensus 366 el~~d~v~i~~ysP 379 (622)
+.+.+.+.+...++
T Consensus 164 ~~G~d~i~i~~i~~ 177 (232)
T TIGR03572 164 QLGAGEILLNSIDR 177 (232)
T ss_pred HcCCCEEEEeCCCc
Confidence 88999888887554
No 244
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.84 E-value=68 Score=28.64 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=43.0
Q ss_pred EEecccccchhHHHHHHHHHHhcCCeee------------CCCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE-EEc
Q 007001 63 MKTFGCSHNQSDSEYMAGQLSAFGYALT------------DNSEEADIWLINT----QSAMDTLIAKCKSAKKPLV-VAG 125 (622)
Q Consensus 63 i~TlGC~~N~~Dse~m~~~L~~~G~~~v------------~~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV-VgG 125 (622)
|.-+||..+..=.+++...|...|+... ....+-|++++-+ .+...+.++.+|++|.+|| +++
T Consensus 3 I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 3 VVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred EEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 4456666777777888888887776431 1123458888877 4556678888999998766 444
No 245
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.63 E-value=4.8e+02 Score=29.50 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCcee---EE----Eeec-CCcchhH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTM---LR----IGMT-NPPFILE 283 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg-~d~~~~l~eLL~~l~~~l~~~~~~~---ir----i~~~-~p~~i~~ 283 (622)
..+.++.+.-++.|.+.|+..|.+.|..++... +-...+-.+.++.+.+.++ +..- .| +++. .|+++.+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~--~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVK--KTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCC--CCEEEEEeccccccccccCchhhHH
Confidence 568888889899999999999999866433210 0011234677788876554 2111 11 1222 3443333
Q ss_pred HHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE--EEEcCCCCCHHHHHHHH
Q 007001 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD--IICGFPGETDEDFNQTV 361 (622)
Q Consensus 284 ~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td--~IvGfPGETeedf~eTl 361 (622)
.. +...... + ...+++.. +.|+- ..+.++++.+++. |..+... ...+ |--|.+-+.+..
T Consensus 100 ~~--v~~A~~~-G-vd~irif~-~lnd~-----------~n~~~~v~~ak~~--G~~v~~~i~~t~~-p~~~~~~~~~~a 160 (448)
T PRK12331 100 SF--VQKSVEN-G-IDIIRIFD-ALNDV-----------RNLETAVKATKKA--GGHAQVAISYTTS-PVHTIDYFVKLA 160 (448)
T ss_pred HH--HHHHHHC-C-CCEEEEEE-ecCcH-----------HHHHHHHHHHHHc--CCeEEEEEEeecC-CCCCHHHHHHHH
Confidence 22 3333333 2 45555554 34432 1366688889988 8665433 3333 666778888888
Q ss_pred HHHHhcCCCeEEE
Q 007001 362 NLIKEYKFPQVHI 374 (622)
Q Consensus 362 ~fl~el~~d~v~i 374 (622)
+.+.+.+.+.+.+
T Consensus 161 ~~l~~~Gad~I~i 173 (448)
T PRK12331 161 KEMQEMGADSICI 173 (448)
T ss_pred HHHHHcCCCEEEE
Confidence 8888888887654
No 246
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=46.46 E-value=2.9e+02 Score=27.92 Aligned_cols=135 Identities=10% Similarity=0.047 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCC
Q 007001 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 297 (622)
Q Consensus 218 ~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 297 (622)
+.++-++.+.+.|+.++++++-+...++. + ...++++++.+... ..-+--+-+. .. +++..+...+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~--~-~~~~~i~~i~~~~~---~pv~~~GGI~--s~----~d~~~~l~~G-- 93 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR--E-TMLDVVERVAEEVF---IPLTVGGGIR--SL----EDARRLLRAG-- 93 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC--c-ccHHHHHHHHHhCC---CCEEEeCCCC--CH----HHHHHHHHcC--
Confidence 55556666777899999999765432222 2 23578888877542 2222222122 11 2233333332
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc-----------CCCCCHHHHHHHHHHHHh
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG-----------FPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvG-----------fPGETeedf~eTl~fl~e 366 (622)
+..+.+|-... .+.+.+.+.++.+.+. .+.+..|+-.+ -+.+|..+..+.++.+.+
T Consensus 94 ~~~v~ig~~~~-----------~~p~~~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 160 (243)
T cd04731 94 ADKVSINSAAV-----------ENPELIREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEE 160 (243)
T ss_pred CceEEECchhh-----------hChHHHHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHH
Confidence 55666663221 1233444444444222 36677775543 234566666677777888
Q ss_pred cCCCeEEEEEeee
Q 007001 367 YKFPQVHISQFYP 379 (622)
Q Consensus 367 l~~d~v~i~~ysP 379 (622)
.+++.+.+.....
T Consensus 161 ~G~d~i~v~~i~~ 173 (243)
T cd04731 161 LGAGEILLTSMDR 173 (243)
T ss_pred CCCCEEEEeccCC
Confidence 8999888877554
No 247
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.80 E-value=1.2e+02 Score=28.55 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 319 EYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 319 ~~t~e~~~~~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
+.+.+.+.+.++.+++. |+.-. -+|+|- |.-.++|+.+-.+.+++++++.++ -|||++
T Consensus 63 ~~~~~~~~~~~~~l~~~--gl~~~-~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF------~pgt~~ 121 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA--GLEGI-LLYVGGNLVVGKQDFPDVEKRFKEMGFDRVF------APGTPP 121 (134)
T ss_pred ccCHHHHHHHHHHHHHC--CCCCC-EEEecCCcCcChhhhHHHHHHHHHcCCCEEE------CcCCCH
Confidence 45677888999999998 76322 366775 334667887777788999987653 367764
No 248
>PLN02321 2-isopropylmalate synthase
Probab=45.57 E-value=3.7e+02 Score=31.78 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=77.6
Q ss_pred CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCC--CCcee-EE---EeecCCcchhH
Q 007001 210 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPP--DGSTM-LR---IGMTNPPFILE 283 (622)
Q Consensus 210 ~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~--~~~~~-ir---i~~~~p~~i~~ 283 (622)
.-.+.+.++-++-++.|.+.|++.|.... ...+.+ + .+.++.|.+.+.. ..... .. +...+...+.
T Consensus 101 ~g~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~Sp~---D-~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId- 172 (632)
T PLN02321 101 PGATLTSKEKLDIARQLAKLGVDIIEAGF---PIASPD---D-LEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDID- 172 (632)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCCcc---H-HHHHHHHHHhcccCCCccccceeeeeehhccHHhHH-
Confidence 34678999999999999999999998752 122221 1 2346666543210 00111 11 2222333332
Q ss_pred HHHHHHHHHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCC---HHHH
Q 007001 284 HLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGET---DEDF 357 (622)
Q Consensus 284 ~l~el~~l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGET---eedf 357 (622)
...+.+.... -..+|+-+ +.||.-+ +.+++. ...+.+.+.++.+++. |.. ++.++.+..+ .+.+
T Consensus 173 ---~A~~al~~a~-~~~I~i~~-stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~--G~~---~v~fs~EDa~rtd~d~l 242 (632)
T PLN02321 173 ---AAWEAVKHAK-RPRIHTFI-ATSEIHMEHKLRKTPDEVVEIARDMVKYARSL--GCE---DVEFSPEDAGRSDPEFL 242 (632)
T ss_pred ---HHHHHhcCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCc---eEEEecccCCCCCHHHH
Confidence 2222221111 13455555 5555544 455543 3455666777788887 643 4566665444 3444
Q ss_pred HHHHHHHHhcCCCeEEE
Q 007001 358 NQTVNLIKEYKFPQVHI 374 (622)
Q Consensus 358 ~eTl~fl~el~~d~v~i 374 (622)
.+.++.+.+.+.+.+.+
T Consensus 243 ~~~~~~a~~aGa~~I~L 259 (632)
T PLN02321 243 YRILGEVIKAGATTLNI 259 (632)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 55666666777766543
No 249
>PLN02540 methylenetetrahydrofolate reductase
Probab=44.96 E-value=1.8e+02 Score=33.89 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc----C--CCHHHHHHHHHHhC
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI----G--VNLPILLNAIVAEL 263 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~----~--~~l~eLL~~l~~~l 263 (622)
+.++.+.|.+.+..+.+.|++.|..+.+|...-+... + ..-.+|++.|.+..
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~ 125 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKY 125 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhC
Confidence 4567788989999999999999976666665433211 1 24678888887643
No 250
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=44.79 E-value=3e+02 Score=28.98 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCC---C---HHHHHHHHHHhCC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGV---N---LPILLNAIVAELP 264 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~---~---l~eLL~~l~~~l~ 264 (622)
++.|.-++..+..|.+.|++.++.. .++.||++... . ..+.+++|.+.++
T Consensus 55 TKnp~P~l~~L~~l~~~gy~~yfq~--Tit~Y~~~lEp~vP~~~~~i~~f~~Ls~~iG 110 (266)
T PF08902_consen 55 TKNPAPFLPYLDELDERGYPYYFQF--TITGYGKDLEPNVPPKDERIETFRELSERIG 110 (266)
T ss_pred cCCcHHHHhhHHHHHhCCCceEEEE--EeCCCCccccCCCCCHHHHHHHHHHHHHHHC
Confidence 5677778888999988999876555 47789988642 2 3344555555553
No 251
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=44.56 E-value=39 Score=34.26 Aligned_cols=55 Identities=33% Similarity=0.520 Sum_probs=37.8
Q ss_pred CccCCCCCCCCCCccEEEEE---ecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEE
Q 007001 45 LSKTGSLSPKIPGTETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (622)
Q Consensus 45 ~~~~~~~~~~~~~~~~v~i~---TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviI 101 (622)
|++.--.++.-|..++||+. |-+..+|. -..|...|.+.||.++++|++|..|+=
T Consensus 8 MS~tIfLdPV~~~~rtVyv~vrNTSd~~~~l--~~~i~~~L~~kGY~vv~~P~~A~Y~lq 65 (215)
T PF05818_consen 8 MSQTIFLDPVAPSQRTVYVQVRNTSDKDINL--ESQIISALQAKGYQVVDDPDEAHYWLQ 65 (215)
T ss_pred ccccEEeCCCCcccceEEEEEecCCCCccch--HHHHHHHHHHCCCEEecChhhCeEEEE
Confidence 44443334445667888876 44555532 235778899999999999999997763
No 252
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.53 E-value=8.4 Score=35.91 Aligned_cols=17 Identities=35% Similarity=0.942 Sum_probs=15.0
Q ss_pred EeCCCCCCCCCCcccCc
Q 007001 190 PINVGCLGACTYCKTKH 206 (622)
Q Consensus 190 ~isrGC~~~CsFC~ip~ 206 (622)
++.+||-+.|+||.+.+
T Consensus 75 KFADG~GH~C~YCq~r~ 91 (169)
T KOG3799|consen 75 KFADGCGHNCSYCQTRF 91 (169)
T ss_pred ccccccCcccchhhhhH
Confidence 67999999999999863
No 253
>PRK13774 formimidoylglutamase; Provisional
Probab=43.37 E-value=2.3e+02 Score=30.25 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH----HHHHHHHH
Q 007001 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE----HLKEIAEV 291 (622)
Q Consensus 216 ~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~----~l~el~~l 291 (622)
.+.|-+.+..+.+.|..-|+|.|++..+||. ++.+.+..+.....-+.|. .|.+.-++ .---+..+
T Consensus 106 ~~~i~~~v~~i~~~g~~pivlGGdHsit~g~---------~~a~~~~~~~~~igvI~~D-AH~Dlr~~~~~~~g~~~~~i 175 (311)
T PRK13774 106 QKEFAMLAAKSIANHRQTFLLGGGHDIAYAQ---------YLATRKVYPTQSIGVINID-AHFDTRAEQQSTSGTSFRQI 175 (311)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcCchHHHHHH---------HHHHHhhcCCCceEEEEeC-CCCCCCCCCCCCCChHHHHH
Confidence 3455555666777888888888887777642 3333333220012233332 22211110 00013333
Q ss_pred HhCCCCceeecccCCCCC--HHHHHhhcCC----CCHHHHHH--------HHHHHHHhCCCCE--EEEEEE-------Ec
Q 007001 292 LRHPCVYSFLHVPVQSGS--DAVLSAMNRE----YTLSDFRT--------VVDTLIELVPGMQ--IATDII-------CG 348 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgs--d~vLk~MnR~----~t~e~~~~--------~I~~lr~~~pgi~--i~td~I-------vG 348 (622)
+..+...+.+++|+++.. ++.++.+++. ++.+++.+ +++.+......+. +..|.+ +|
T Consensus 176 ~e~~~~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~aPGtg 255 (311)
T PRK13774 176 LEEDENTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAFAPGVS 255 (311)
T ss_pred HhcCCCCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhhCCCCC
Confidence 333222467899999874 5555554432 35555533 4444432111244 444444 45
Q ss_pred CC---CCCHHHHHHHHHHHHh-cCCCeEEEEEeeeCCC
Q 007001 349 FP---GETDEDFNQTVNLIKE-YKFPQVHISQFYPRPG 382 (622)
Q Consensus 349 fP---GETeedf~eTl~fl~e-l~~d~v~i~~ysP~PG 382 (622)
-| |=|..++.+.++.+.+ .++-.+.+.-|+|...
T Consensus 256 tP~pgGLt~~e~l~il~~l~~~~~v~g~DivE~nP~~D 293 (311)
T PRK13774 256 APAVLGLYPHTVLELAKRIIPSDKVSSVSIAEMNPTYD 293 (311)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCC
Confidence 44 4577777777777643 3555667777777643
No 254
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=42.95 E-value=66 Score=31.16 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------------CCCCcEEEEec-hHHHHHHHHHHhcCCCcEEEEcc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------------SEEADIWLINT-QSAMDTLIAKCKSAKKPLVVAGC 126 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------------~~~ADlviINT-~~~~~~ii~~~k~~~~~VVVgGC 126 (622)
|.+-+..+...|...||+++.. ....|.++|-| +..+..++.++|+.|+.|++-|.
T Consensus 64 ~a~a~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 64 NQYASDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred chhccHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 4333456778888899986421 24567777766 88888899999999999888785
No 255
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=41.78 E-value=1.7e+02 Score=30.32 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR 246 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~ 246 (622)
-+++.|+|++.+....+.|-.-..|.++|...||.
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA 91 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGA 91 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHH
Confidence 46899999999999999999999999999999974
No 256
>PRK10812 putative DNAse; Provisional
Probab=40.93 E-value=1.2e+02 Score=31.49 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchh--HHHHHHHHHH
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFIL--EHLKEIAEVL 292 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~--~~l~el~~l~ 292 (622)
..++++++++ +.|+..++.+|.+...+ ...+ ++.+..+ ..+..++ +||..+. ..++++.+++
T Consensus 21 d~~~vl~~a~---~~gv~~~~~~~~~~~~~--------~~~~-~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~l~~~~ 84 (265)
T PRK10812 21 DVDDVLAKAA---ARDVKFCLAVATTLPGY--------RHMR-DLVGERD---NVVFSCG-VHPLNQDEPYDVEELRRLA 84 (265)
T ss_pred CHHHHHHHHH---HcCCCEEEEeCCCHHHH--------HHHH-HHHhhCC---CeEEEEE-eCCCCCCChhHHHHHHHHh
Confidence 5667766654 67999888877543322 2322 3333343 3455677 7887652 3455566666
Q ss_pred hCCCCceee-cccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 007001 293 RHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369 (622)
Q Consensus 293 ~~~~v~~~l-~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 369 (622)
..++ +..| .+|+.-.-+. -.+....+-|...++.+++. +..+..+.-- ...++++.+++.+.
T Consensus 85 ~~~~-vvaIGEiGLD~~~~~----~~~~~Q~~vf~~ql~lA~e~--~~Pv~iH~r~--------a~~~~l~iL~~~~~ 147 (265)
T PRK10812 85 AEEG-VVAMGETGLDYYYTP----ETKVRQQESFRHHIQIGREL--NKPVIVHTRD--------ARADTLAILREEKV 147 (265)
T ss_pred cCCC-EEEEEeeecCcCCCC----CCHHHHHHHHHHHHHHHHHh--CCCeEEEeeC--------chHHHHHHHHhhcC
Confidence 5554 3455 5677643110 00112234577788888888 7666555321 23467777776543
No 257
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=40.66 E-value=48 Score=41.85 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC--CcEEEEccccc
Q 007001 77 YMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK--KPLVVAGCVPQ 129 (622)
Q Consensus 77 ~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~--~~VVVgGC~aq 129 (622)
.+.-.|+.+||++++- ...||+|.++. ...+.++++.+++.+ .+|+|||-..+
T Consensus 751 IV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~~v~v~vGGa~~s 824 (1178)
T TIGR02082 751 IVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGITIPLLIGGAATS 824 (1178)
T ss_pred HHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 4556788999998753 46799999987 667788888888876 47999995443
No 258
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=40.47 E-value=74 Score=31.42 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=37.9
Q ss_pred ecccccchhHHHHHHHH-----HHhcCCe-eeCCCCCCcEEEEec--hHHHHHHHHHHhc--CCCc--EEEEcccccc
Q 007001 65 TFGCSHNQSDSEYMAGQ-----LSAFGYA-LTDNSEEADIWLINT--QSAMDTLIAKCKS--AKKP--LVVAGCVPQG 130 (622)
Q Consensus 65 TlGC~~N~~Dse~m~~~-----L~~~G~~-~v~~~~~ADlviINT--~~~~~~ii~~~k~--~~~~--VVVgGC~aq~ 130 (622)
+.|| -|.|.++.. ++..|.. .+..+..||+++|.. -..+...++++++ ..++ |.+|-|....
T Consensus 41 ~~sC----C~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillVeG~VT~~m~~~l~~~~e~~p~pk~VIAvGaCA~~G 114 (180)
T PRK14820 41 ATSC----CGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTIAKKMAPVLKQVYLQMAEPRWVVAVGACASSG 114 (180)
T ss_pred cccH----HHHHHHHhcCccccHHHhCccccCCCCccceEEEEEecCCcccHHHHHHHHHhcCCCCeEEEEecccccC
Confidence 4477 888877653 3456664 567899999999988 3333444444433 2333 4467786543
No 259
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=40.39 E-value=2.1e+02 Score=28.63 Aligned_cols=141 Identities=21% Similarity=0.237 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-----CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-----VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKE 287 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-----~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~e 287 (622)
..+.++.+++++.+.+.|..-|-+-++-+.-+..... ..+..+++.+.+.. ....+.+.+.+|..+..-+
T Consensus 15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~---~~~plSIDT~~~~v~~~aL-- 89 (210)
T PF00809_consen 15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREEN---PDVPLSIDTFNPEVAEAAL-- 89 (210)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHH---TTSEEEEEESSHHHHHHHH--
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccC---CCeEEEEECCCHHHHHHHH--
Confidence 3456888999999999999988887764433222111 24555666665411 2467888887775433221
Q ss_pred HHHHHhCCCCceeecccCCCCCHHHHHhhc-----------C--C--------CCHHHHHHHHHH-------HHHhCCCC
Q 007001 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----------R--E--------YTLSDFRTVVDT-------LIELVPGM 339 (622)
Q Consensus 288 l~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn-----------R--~--------~t~e~~~~~I~~-------lr~~~pgi 339 (622)
+. ...+.+- ..|++- +++++..+. + + +..+-+.+.++. +.++ |+
T Consensus 90 --~~--g~~~ind-~~~~~~-~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~--Gi 161 (210)
T PF00809_consen 90 --KA--GADIIND-ISGFED-DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERIEALEKA--GI 161 (210)
T ss_dssp --HH--TSSEEEE-TTTTSS-STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHT--T-
T ss_pred --Hc--CcceEEe-cccccc-cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHHHHHHHHHHc--CC
Confidence 11 1111111 122222 455554322 1 0 111223333344 4446 77
Q ss_pred ---EEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 340 ---QIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 340 ---~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.+..|-.+|| +-+.++-.++++.++.+
T Consensus 162 ~~~~Ii~DPgigf-~~~~~~~~~~l~~i~~~ 191 (210)
T PF00809_consen 162 PRERIILDPGIGF-GKDPEQNLELLRNIEEL 191 (210)
T ss_dssp -GGGEEEETTTTS-STTHHHHHHHHHTHHHH
T ss_pred CHHHEeeccccCc-CCCHHHHHHHHHHHHHH
Confidence 7899999999 77777666677666664
No 260
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.30 E-value=1.1e+02 Score=29.34 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=45.4
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeee-------CCCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE-EEcc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINT----QSAMDTLIAKCKSAKKPLV-VAGC 126 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v-------~~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV-VgGC 126 (622)
++|++. |+..+..=.+++...|...|.... ....+-|++|+-+ .+...++++.+|++|.+|| +++-
T Consensus 31 ~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 31 KRIFVA--GAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTN 108 (179)
T ss_pred CEEEEE--ecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 565554 555667777888888888887542 2334568888876 4556678888999997654 6664
Q ss_pred c
Q 007001 127 V 127 (622)
Q Consensus 127 ~ 127 (622)
.
T Consensus 109 ~ 109 (179)
T TIGR03127 109 P 109 (179)
T ss_pred C
Confidence 3
No 261
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=39.76 E-value=1.3e+02 Score=25.66 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 322 ~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
.+.+.+..+.+++..|+..+..-++-+ +.-++.+.++-+.+.+.+.+.+.|+.+.+|.-.
T Consensus 16 ~~~~~~~~~~l~~~~~~~~v~~a~~~~----~~P~i~~~l~~l~~~g~~~vvvvPl~~~~g~h~ 75 (101)
T cd03409 16 KKDIEAQAHNLAESLPDFPYYVGFQSG----LGPDTEEAIRELAEEGYQRVVIVPLAPVSGDEV 75 (101)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECC----CCCCHHHHHHHHHHcCCCeEEEEeCccccChhh
Confidence 346677777888877666665555555 233577888889888999999999999988654
No 262
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=39.71 E-value=75 Score=36.28 Aligned_cols=29 Identities=41% Similarity=0.541 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCeeeCCCCCCcEEE-Eec
Q 007001 75 SEYMAGQLSAFGYALTDNSEEADIWL-INT 103 (622)
Q Consensus 75 se~m~~~L~~~G~~~v~~~~~ADlvi-INT 103 (622)
.+.+...+...|..+++.+++||+|+ |||
T Consensus 280 ~esv~~hI~aaGg~~~~~~~~AD~vL~Vnt 309 (497)
T PF13552_consen 280 GESVKEHIRAAGGVLVDSPEEADLVLAVNT 309 (497)
T ss_pred HHHHHHHHHhcCCEEcCCCCCCCEEEEEec
Confidence 46788889999999999999999876 688
No 263
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=39.60 E-value=5.4e+02 Score=28.07 Aligned_cols=139 Identities=20% Similarity=0.305 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC--------------CCcCCCHHHHHHHHHHhCCCCCceeEEEeecCC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG--------------RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg--------------~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p 278 (622)
..+.+.-++++++|.+.|..-+.+.-.|.-.-. .|...+..--+..+.. +...+|+ ||
T Consensus 30 T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~-----g~dkiRI---NP 101 (346)
T TIGR00612 30 TIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAK-----GVAKVRI---NP 101 (346)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHh-----ccCeEEE---CC
Confidence 568899999999999999887776533211100 0101111222223222 3345564 56
Q ss_pred cch--hHHHHHHHHHHhCCCCceeecccCCCCC--HHHHHhhcCCCC----HHHHHHHHHHHHHhCCCCEEEEEEEEcCC
Q 007001 279 PFI--LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREYT----LSDFRTVVDTLIELVPGMQIATDIICGFP 350 (622)
Q Consensus 279 ~~i--~~~l~el~~l~~~~~v~~~l~IGlQSgs--d~vLk~MnR~~t----~e~~~~~I~~lr~~~pgi~i~td~IvGfP 350 (622)
-.+ .+.+.++.+.++..++ -+-||+-||| .+++++.+.. + .+..++-++.+.+. |+. |+++-+-
T Consensus 102 GNig~~e~v~~vv~~ak~~~i--pIRIGVN~GSL~~~~~~kyg~~-t~eamveSAl~~v~~le~~--~F~---diviS~K 173 (346)
T TIGR00612 102 GNIGFRERVRDVVEKARDHGK--AMRIGVNHGSLERRLLEKYGDA-TAEAMVQSALEEAAILEKL--GFR---NVVLSMK 173 (346)
T ss_pred CCCCCHHHHHHHHHHHHHCCC--CEEEecCCCCCcHHHHHHcCCC-CHHHHHHHHHHHHHHHHHC--CCC---cEEEEEE
Confidence 555 3355566666666554 5667777775 4455544321 3 34556667777777 654 7788776
Q ss_pred CCCHHHHHHHHHHHHhc
Q 007001 351 GETDEDFNQTVNLIKEY 367 (622)
Q Consensus 351 GETeedf~eTl~fl~el 367 (622)
.-+.....+..+++.+.
T Consensus 174 sSdv~~~i~ayr~la~~ 190 (346)
T TIGR00612 174 ASDVAETVAAYRLLAER 190 (346)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 66666666666666543
No 264
>PHA01735 hypothetical protein
Probab=38.94 E-value=44 Score=27.73 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccC----CCCCHHHHHHH
Q 007001 352 ETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARM----KKVPSAVVKKR 399 (622)
Q Consensus 352 ETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~----~~v~~~~~k~R 399 (622)
-|-.|+...++|+++..++-+ |.+|+|+..+ |++..+..++|
T Consensus 30 ATtaDL~AA~d~Lk~NdItgv------~~~gspl~~La~~~P~l~~e~vq~~ 75 (76)
T PHA01735 30 ATTADLRAACDWLKSNDITGV------AVDGSPLAKLAGLMPQLTFEDVQER 75 (76)
T ss_pred ccHHHHHHHHHHHHHCCCcee------eCCCCHHHHHHhcCccCCHHHHHhc
Confidence 377899999999999988654 7899998764 46666666654
No 265
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=38.92 E-value=6e+02 Score=28.40 Aligned_cols=144 Identities=17% Similarity=0.122 Sum_probs=86.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCc-eeEEEeecCCcchhHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGS-TMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~-~~iri~~~~p~~i~~~l~el~ 289 (622)
-.+.++++-++-++.|-+.|++.|.......+. .-.+.++.+.... +. ....+. .....+. ..+.
T Consensus 18 g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~-------~~~~~~~~i~~~~---~~~~~~~~~-~~~~~~~---~~~e 83 (409)
T COG0119 18 GVSFSVEEKIRIAKALDDLGVDYIEAGFPVASP-------GDFEFVRAIAEKA---GLFICALIA-ALARAIK---RDIE 83 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCh-------hhHHHHHHHHHhc---Ccccchhhh-hhHHhHH---hhHH
Confidence 467899999999999999999999876432211 1256666665322 22 111111 1111111 1344
Q ss_pred HHHhCCCCceeecccCCCCCHHHH-Hhhc--CCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAVL-SAMN--REYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~vL-k~Mn--R~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 366 (622)
.+...+ ...+|+=+ +.|+--+ ..++ +....+.+.+.++.++++ |+.+..+..-.+ .-+.+.+.+.++.+.+
T Consensus 84 a~~~a~--~~~i~if~-~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~--g~~~~~~~Ed~~-rt~~~~l~~~~~~~~~ 157 (409)
T COG0119 84 ALLEAG--VDRIHIFI-ATSDLHLRYKLKKTREEVLERAVDAVEYARDH--GLEVRFSAEDAT-RTDPEFLAEVVKAAIE 157 (409)
T ss_pred HHHhCC--CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCeEEEEeeccc-cCCHHHHHHHHHHHHH
Confidence 444333 34555544 3444333 3333 234567788889999999 888887777776 5566777778888887
Q ss_pred cCCCeEEE
Q 007001 367 YKFPQVHI 374 (622)
Q Consensus 367 l~~d~v~i 374 (622)
.+.+.+++
T Consensus 158 ~ga~~i~l 165 (409)
T COG0119 158 AGADRINL 165 (409)
T ss_pred cCCcEEEE
Confidence 77766654
No 266
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=38.91 E-value=2.8e+02 Score=31.81 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhC-C
Q 007001 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH-P 295 (622)
Q Consensus 217 e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~-~ 295 (622)
+.|++.++++.+.|+.-|.+.++-+ .-+. ..+..+++.+.+.. ...+.+.+.+|..+.. .++. .
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st-~p~~---~~v~~~V~~l~~~~----~~pISIDT~~~~v~ea-------AL~aGA 229 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSF-DDDP---DVVKEKVKTALDAL----DSPVIADTPTLDELYE-------ALKAGA 229 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcC-CCcH---HHHHHHHHHHHhhC----CCcEEEeCCCHHHHHH-------HHHcCC
Confidence 8899999999999999888765432 1111 23566676665432 3567777766653322 1111 1
Q ss_pred CCceeecccCCCCCHHHHHhhc------------CCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEcCCCCCHHHHHHHHH
Q 007001 296 CVYSFLHVPVQSGSDAVLSAMN------------REYTLSDFRTVVDTLIELVPGM-QIATDIICGFPGETDEDFNQTVN 362 (622)
Q Consensus 296 ~v~~~l~IGlQSgsd~vLk~Mn------------R~~t~e~~~~~I~~lr~~~pgi-~i~td~IvGfPGETeedf~eTl~ 362 (622)
.+.+.++- .. .++++..+. .....+.+.+.++.++++ |+ .+..|=++||++. .+.++++
T Consensus 230 diINsVs~--~~-~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~--Gi~~IIlDPglg~~~~---~l~~sL~ 301 (499)
T TIGR00284 230 SGVIMPDV--EN-AVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS--GYSKVAADPSLSPPLL---GLLESII 301 (499)
T ss_pred CEEEECCc--cc-hhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC--CCCcEEEeCCCCcchH---HHHHHHH
Confidence 12222111 01 122322111 122347788999999999 98 7888999997532 3666666
Q ss_pred HHHh
Q 007001 363 LIKE 366 (622)
Q Consensus 363 fl~e 366 (622)
.++.
T Consensus 302 ~l~~ 305 (499)
T TIGR00284 302 RFRR 305 (499)
T ss_pred HHHH
Confidence 6653
No 267
>PRK15452 putative protease; Provisional
Probab=38.81 E-value=1.6e+02 Score=33.22 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=53.3
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC-CHHHHHHHHHHHHhcCCCeEEEEE
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE-TDEDFNQTVNLIKEYKFPQVHISQ 376 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGE-Teedf~eTl~fl~el~~d~v~i~~ 376 (622)
...|.+|.++.+-+. -...++.+++.++++.++++ |..+...+= -+|.+ ..+.+.+.++.+.++++|.+-+.-
T Consensus 24 ADaVY~G~~~~~~R~---~~~~f~~edl~eav~~ah~~--g~kvyvt~n-~i~~e~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 24 ADAVYAGQPRYSLRV---RNNEFNHENLALGINEAHAL--GKKFYVVVN-IAPHNAKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred CCEEEECCCccchhh---hccCCCHHHHHHHHHHHHHc--CCEEEEEec-CcCCHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 688999999888653 24678899999999999999 866533211 23443 345667777778888998887764
Q ss_pred e
Q 007001 377 F 377 (622)
Q Consensus 377 y 377 (622)
+
T Consensus 98 ~ 98 (443)
T PRK15452 98 P 98 (443)
T ss_pred H
Confidence 3
No 268
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=38.47 E-value=66 Score=33.16 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=40.4
Q ss_pred cccccchhHHH-HHHHHHHhc--CC--eeeC---CCCCCcEEEEec---hHHHHHHHHHHhcCCCcEE-EEcccccc
Q 007001 66 FGCSHNQSDSE-YMAGQLSAF--GY--ALTD---NSEEADIWLINT---QSAMDTLIAKCKSAKKPLV-VAGCVPQG 130 (622)
Q Consensus 66 lGC~~N~~Dse-~m~~~L~~~--G~--~~v~---~~~~ADlviINT---~~~~~~ii~~~k~~~~~VV-VgGC~aq~ 130 (622)
-||.|+..|.. .+...|... =| ..+| .++ .|+++|-. .+...+.++.+|++.+.|| +|-|.++.
T Consensus 15 ~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValVEGsV~~ee~lE~v~ElRekakivVA~GsCA~~G 90 (247)
T COG1941 15 SGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALVEGSVCDEEELELVKELREKAKIVVALGSCAVTG 90 (247)
T ss_pred cchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEEecccCcHHHHHHHHHHHHhCcEEEEEecchhcC
Confidence 48999988864 455555533 11 1122 234 89999977 4555567888887665544 67787664
No 269
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=38.23 E-value=46 Score=40.18 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=42.9
Q ss_pred EEEEEecccccchhHHHHHHH-----HHHhcCCe-eeCCCCCCcEEEEec--hHHHHHHHHHHhc--CCCc--EEEEccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAG-----QLSAFGYA-LTDNSEEADIWLINT--QSAMDTLIAKCKS--AKKP--LVVAGCV 127 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~-----~L~~~G~~-~v~~~~~ADlviINT--~~~~~~ii~~~k~--~~~~--VVVgGC~ 127 (622)
.+|+.++||.= -|.|.++- .++..|+. .+..+..||+++|+. ..++...++++.+ ..+| |.+|.|.
T Consensus 23 s~w~~~~~~~c--c~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv~G~vt~~~~~~l~~~~~~~p~pk~via~G~Ca 100 (788)
T PRK13292 23 SLWPMFFGLSC--CFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCA 100 (788)
T ss_pred CCcceecCCcc--HHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEEecCCcHhhHHHHHHHHHhCCCCCEEEEecccc
Confidence 45555665522 77777653 45678886 578999999999988 3444443443322 2344 4467787
Q ss_pred ccc
Q 007001 128 PQG 130 (622)
Q Consensus 128 aq~ 130 (622)
.+.
T Consensus 101 ~~G 103 (788)
T PRK13292 101 NSG 103 (788)
T ss_pred cCC
Confidence 664
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.58 E-value=2.6e+02 Score=27.51 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=43.3
Q ss_pred CCCcEEEEec-------hHHHHHHHHHHhcCCCcEEEEccccccchh---hhcccccEE-EcCCchHHHHHHHHHHhc
Q 007001 94 EEADIWLINT-------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRD---LKELEGVSI-VGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 94 ~~ADlviINT-------~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe---~~~~~~d~V-vG~~~~~~l~ell~~~~~ 160 (622)
++||+++|-- -+++++.++..-+.+++++++=..-++.|- +.....+.+ +-+.+.+.++.-+-..++
T Consensus 99 ~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 99 EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHhc
Confidence 4599999976 456667777766667777776555666773 344455555 777777766654444443
No 271
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.14 E-value=1.3e+02 Score=28.72 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=40.1
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec--------------hHHHHHHHHHHhc--CCCcEEE
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------------QSAMDTLIAKCKS--AKKPLVV 123 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT--------------~~~~~~ii~~~k~--~~~~VVV 123 (622)
.+.+.++|+.=.. +..|...|.. . ....+|+|+|+. .+.+.++++++++ .+.+|++
T Consensus 40 ~~~~~n~g~~G~t--~~~~~~~l~~----~--~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv 111 (191)
T cd01836 40 GVRWRLFAKTGAT--SADLLRQLAP----L--PETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVV 111 (191)
T ss_pred ceEEEEEecCCcC--HHHHHHHHHh----c--ccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 4566777775544 5667777765 1 235789999965 4566778888887 5668888
Q ss_pred Ecc
Q 007001 124 AGC 126 (622)
Q Consensus 124 gGC 126 (622)
.+.
T Consensus 112 ~~~ 114 (191)
T cd01836 112 TAV 114 (191)
T ss_pred ECC
Confidence 774
No 272
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=37.02 E-value=64 Score=32.95 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCCC
Q 007001 76 EYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAKK 119 (622)
Q Consensus 76 e~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~~ 119 (622)
..+...|..+||+.++- ..+||+|..++ -..++++++.+++.|.
T Consensus 122 ~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~eeGi 184 (227)
T COG5012 122 NIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEEGI 184 (227)
T ss_pred HHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcCCcEEechHHHHHHHHHHHHHHHHHHHcCC
Confidence 35667889999998763 35699998877 4457788999998874
No 273
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.77 E-value=70 Score=28.23 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCeeeCCCCCCcEEEEechHHHHHHHHHHhcCCCcEEEEcc
Q 007001 77 YMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLVVAGC 126 (622)
Q Consensus 77 ~m~~~L~~~G~~~v~~~~~ADlviINT~~~~~~ii~~~k~~~~~VVVgGC 126 (622)
.+...-.+.|.++++.+.+||++|+-. +++-+- . .-.|++|++|+-
T Consensus 22 vl~AAA~ka~l~ii~tp~dAeLviV~G-~sipnd-~--~l~GKkv~i~d~ 67 (103)
T COG3925 22 VLGAAAHKAGLEIIDTPNDAELVIVFG-SSIPND-S--ALNGKKVWIGDI 67 (103)
T ss_pred HHHHHHHHCCCeeeCCCCcccEEEEec-cccCCC-c--cccCceEEEecH
Confidence 344445578999999999999999977 111100 0 013678888874
No 274
>PLN02615 arginase
Probab=36.77 E-value=5.8e+02 Score=27.62 Aligned_cols=155 Identities=16% Similarity=0.261 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHC-CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH-------HHHH
Q 007001 216 VESLVGRVRTVIAD-GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKE 287 (622)
Q Consensus 216 ~e~Iv~Ei~~L~~~-GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~-------~l~e 287 (622)
.+.|-+.++.+.+. +..-|+|.|++..+|+ .++.+.+..+ ....-+.|. .|++.-++ +---
T Consensus 132 ~~~i~~~v~~ll~~~~~~Pi~LGGDHsit~~---------~iral~~~~~-~~v~vI~fD-AH~Dl~~~~~g~~~shgs~ 200 (338)
T PLN02615 132 MNVISESVKLVMEEEPLRPLVLGGDHSISYP---------VVRAVSEKLG-GPVDILHLD-AHPDIYHAFEGNKYSHASS 200 (338)
T ss_pred HHHHHHHHHHHHhcCCCceEEECcchHhhHH---------HHHHHHHHhC-CCeEEEEEe-cCcCCCCCCCCCCcCchhH
Confidence 44444445555554 5556777777666653 3455544331 023344444 34332111 1011
Q ss_pred HHHHHhCCCCceeecccCCCCCHHHHHhhcCC----CCHHH---HHHHHHHHHHh--CCCCEEEEE--EE-------EcC
Q 007001 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSD---FRTVVDTLIEL--VPGMQIATD--II-------CGF 349 (622)
Q Consensus 288 l~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~----~t~e~---~~~~I~~lr~~--~pgi~i~td--~I-------vGf 349 (622)
+..++..+..-+.+++|+++.+.+-.+.+++. ++..+ ..+.++.++.. .+.+.++.| .+ +|-
T Consensus 201 ~rr~~e~~~~~~~vqiGiR~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vYiS~DiDvlDpa~aPGtgt 280 (338)
T PLN02615 201 FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSKDREKLENLKLGEGVKGVYISIDVDCLDPAFAPGVSH 280 (338)
T ss_pred HHHHhhCCCcCcEEEEeecCCCHHHHHHHHHCCCEEEEeeHhhhHHHHHHHHHhccCCCeEEEEEeeCccCHhhCCCCCC
Confidence 33344333234789999999887766655432 12222 24455555431 123444444 33 344
Q ss_pred C---CCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCC
Q 007001 350 P---GETDEDFNQTVNLIKEYKFPQVHISQFYPRPG 382 (622)
Q Consensus 350 P---GETeedf~eTl~fl~el~~d~v~i~~ysP~PG 382 (622)
| |=|..++.+.++.+.. ++--+-+.-++|...
T Consensus 281 pepgGLt~~e~l~il~~l~~-~vvG~DvvEv~P~~D 315 (338)
T PLN02615 281 IEPGGLSFRDVLNILHNLQG-DVVGADVVEFNPQRD 315 (338)
T ss_pred CCCCCCCHHHHHHHHHHhhC-CEEEEEEEEECCCCC
Confidence 4 4567777777776644 555566677777544
No 275
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=36.67 E-value=1.3e+02 Score=31.47 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCceeEEEeecCCcc-----
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF----- 280 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~------~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~----- 280 (622)
|.++...+.+++..+.+.|++.|.++.+|....|... -....+|++.+.+... ....+.+. .+|..
T Consensus 80 rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~--~~~~i~va-~~P~~hp~~~ 156 (287)
T PF02219_consen 80 RDRNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYG--DDFSIGVA-GYPEGHPEAP 156 (287)
T ss_dssp TTSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHG--GGSEEEEE-E-TTHHTTCS
T ss_pred cCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcC--cccccccc-cCCCCCcccc
Confidence 3467789999999999999999988877765543311 0235788888774332 22344443 33321
Q ss_pred -hhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCC--EEEEEEE
Q 007001 281 -ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGM--QIATDII 346 (622)
Q Consensus 281 -i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi--~i~td~I 346 (622)
+...++.+.+-...+ +.++ .. .=-|+.+.+.+.++.+++. |+ .|...+|
T Consensus 157 ~~~~~~~~l~~Ki~aG--A~f~-----------iT--Q~~fd~~~~~~~~~~~~~~--g~~~pIi~GI~ 208 (287)
T PF02219_consen 157 DFEAELKRLKKKIDAG--ADFI-----------IT--QPFFDAEAFERFLDRLREA--GIDVPIIPGIM 208 (287)
T ss_dssp SHHHHHHHHHHHHHTT--ESEE-----------EE--EE-SSHHHHHHHHHHHHHT--THTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHCC--CCEE-----------ec--cccCCHHHHHHHHHHHHHc--CCCCcEEEEEe
Confidence 111122222211111 2221 00 1136778888899999988 65 5544444
No 276
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=36.29 E-value=3e+02 Score=27.96 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCC
Q 007001 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 297 (622)
Q Consensus 218 ~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 297 (622)
+.++-++.+.+.|+++++++|-|-. .|.+ .-.++++++.+... ...++.-+ ++. .+++..++..+
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~---~n~~~i~~i~~~~~--~~v~vgGG-ir~------~edv~~~l~~G-- 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRG---DNDEAIRELAAAWP--LGLWVDGG-IRS------LENAQEWLKRG-- 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCC---ccHHHHHHHHHhCC--CCEEEecC-cCC------HHHHHHHHHcC--
Confidence 4555667777889999999986643 2432 23678888876532 11222222 111 12344444433
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC--CCCHHHHHHHHHHHHhcCCCeEEEE
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFP--GETDEDFNQTVNLIKEYKFPQVHIS 375 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfP--GETeedf~eTl~fl~el~~d~v~i~ 375 (622)
+.++-+|-++.+++.+ .++++.+.+. .+.++.|+-=|.- ..+..++.+.++.+.+. ++.+++.
T Consensus 101 a~~viigt~~~~~~~~------------~~~~~~~~~~--~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ 165 (233)
T cd04723 101 ASRVIVGTETLPSDDD------------EDRLAALGEQ--RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVL 165 (233)
T ss_pred CCeEEEcceeccchHH------------HHHHHhcCCC--CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEE
Confidence 5678888887764322 2222222111 3566666643310 13555677788888888 8877776
Q ss_pred EeeeCCCC
Q 007001 376 QFYPRPGT 383 (622)
Q Consensus 376 ~ysP~PGT 383 (622)
-... -||
T Consensus 166 di~~-~G~ 172 (233)
T cd04723 166 DIDR-VGS 172 (233)
T ss_pred EcCc-ccc
Confidence 6543 444
No 277
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.12 E-value=1.2e+02 Score=29.34 Aligned_cols=52 Identities=17% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 007001 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 376 (622)
Q Consensus 322 ~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ 376 (622)
.+...++.+.+++.+||+.+.... -| .-++++-++.++.+.+.++|.+.+..
T Consensus 58 ~~~~~~~~~~l~~~yP~l~ivg~~-~g--~f~~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 58 EEVLEKAAANLRRRYPGLRIVGYH-HG--YFDEEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEec-CC--CCChhhHHHHHHHHHHcCCCEEEEEC
Confidence 345566788899999998874332 22 12778888999999999999887765
No 278
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=35.94 E-value=1e+02 Score=34.02 Aligned_cols=58 Identities=12% Similarity=0.188 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeC
Q 007001 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPR 380 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~ 380 (622)
+..+.|++.+..+++.+|++.+-+.++-+ .+.++|.+.++.+++.+.|.+-++..+|.
T Consensus 95 ~g~~~~l~~i~~~k~~~~~~pvIaSi~~~---~s~~~~~~~a~~~e~~GaD~iELNiSCPn 152 (385)
T PLN02495 95 RPFETMLAEFKQLKEEYPDRILIASIMEE---YNKDAWEEIIERVEETGVDALEINFSCPH 152 (385)
T ss_pred cCHHHHHHHHHHHHhhCCCCcEEEEccCC---CCHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 46788888888888777776666665532 58999999999999999999999998886
No 279
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.66 E-value=4.7e+02 Score=26.24 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=68.4
Q ss_pred HHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCc
Q 007001 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 298 (622)
Q Consensus 219 Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~ 298 (622)
.++-++.+.+.|++++++.+-+...-+. ....++++++.+... ..+.++ -..... +++..++..+ +
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~~---~~~~~~i~~i~~~~~----~~l~v~-GGi~~~----~~~~~~~~~G--a 99 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAFEGE---RKNAEAIEKIIEAVG----VPVQLG-GGIRSA----EDAASLLDLG--V 99 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhhcCC---cccHHHHHHHHHHcC----CcEEEc-CCcCCH----HHHHHHHHcC--C
Confidence 4445555667899999999765432222 234677777776532 223332 111111 2233333332 6
Q ss_pred eeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCC--CCEEEEEEE------EcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 299 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVP--GMQIATDII------CGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 299 ~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~p--gi~i~td~I------vGfPGETeedf~eTl~fl~el~~d 370 (622)
..+++|-....+ .+. +..+.+.++ .+.++.|+. -|.-.++..+..+..+.+.+.+++
T Consensus 100 ~~v~iGs~~~~~-----------~~~----~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~ 164 (241)
T PRK13585 100 DRVILGTAAVEN-----------PEI----VRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAG 164 (241)
T ss_pred CEEEEChHHhhC-----------hHH----HHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCC
Confidence 678887554321 122 333333332 244444532 243333333666777777888999
Q ss_pred eEEEEEee
Q 007001 371 QVHISQFY 378 (622)
Q Consensus 371 ~v~i~~ys 378 (622)
.+++....
T Consensus 165 ~i~~~~~~ 172 (241)
T PRK13585 165 SILFTNVD 172 (241)
T ss_pred EEEEEeec
Confidence 88876654
No 280
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.37 E-value=5.5e+02 Score=27.64 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=47.8
Q ss_pred EEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-------CCCHHHHHHHH
Q 007001 187 EILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAI 259 (622)
Q Consensus 187 a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-------~~~l~eLL~~l 259 (622)
..|-+..| ....=.++...|-+| .|.+.+++|++.+.+.|++.|.|+|.-...+..+. ..-+..-++.|
T Consensus 35 ~PiFV~eg---~~~~~~I~SMPgv~r-~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~i 110 (330)
T COG0113 35 YPIFVVEG---ENIKEEIPSMPGVYR-YSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAI 110 (330)
T ss_pred EeEEEecC---CCCccccCCCCCcee-ccHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHHHHHH
Confidence 34455555 333334556656555 58999999999999999999999985322221111 12356777888
Q ss_pred HHhCC
Q 007001 260 VAELP 264 (622)
Q Consensus 260 ~~~l~ 264 (622)
.+.++
T Consensus 111 k~~~p 115 (330)
T COG0113 111 KEAFP 115 (330)
T ss_pred HHhCC
Confidence 77665
No 281
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=35.30 E-value=5e+02 Score=26.42 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCC
Q 007001 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 297 (622)
Q Consensus 218 ~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 297 (622)
+-++-++.+.+.|+++++++|-|- ..|.+ .+ .++++++.+... ..+.++- --. .++++..++..+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~-~~g~~--~n-~~~i~~i~~~~~----~pv~vgG-Gir----s~edv~~~l~~G-- 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDA-AFGRG--SN-RELLAEVVGKLD----VKVELSG-GIR----DDESLEAALATG-- 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccc-cCCCC--cc-HHHHHHHHHHcC----CCEEEcC-CCC----CHHHHHHHHHCC--
Confidence 455566777789999999998763 33432 34 488999987542 2233321 111 112344444432
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE---EEcCCC--CCHHHHHHHHHHHHhcCCCeE
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI---ICGFPG--ETDEDFNQTVNLIKEYKFPQV 372 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~---IvGfPG--ETeedf~eTl~fl~el~~d~v 372 (622)
+.++.+|-....+ .+-+.++++.+.+. +.++.|+ -+=..| ++..+..+.++.+.+.+++.+
T Consensus 98 a~kvviGs~~l~~-----------p~l~~~i~~~~~~~---i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~i 163 (241)
T PRK14024 98 CARVNIGTAALEN-----------PEWCARVIAEHGDR---VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRY 163 (241)
T ss_pred CCEEEECchHhCC-----------HHHHHHHHHHhhhh---EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEE
Confidence 5566666544322 23334444444332 3344444 111123 344455666677778888877
Q ss_pred EEEEee
Q 007001 373 HISQFY 378 (622)
Q Consensus 373 ~i~~ys 378 (622)
-++.-+
T Consensus 164 iv~~~~ 169 (241)
T PRK14024 164 VVTDVT 169 (241)
T ss_pred EEEeec
Confidence 666443
No 282
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=34.96 E-value=4.4e+02 Score=25.67 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=69.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
.|..+++++++-++.+.+.|++-|.+.-.+ ..-.+.++.+.+..+ ...+-.+++.. .+.+++..
T Consensus 10 ~r~~~~~~~~~~~~~l~~~G~~~vev~~~~---------~~~~~~i~~l~~~~~---~~~iGag~v~~---~~~~~~a~- 73 (190)
T cd00452 10 LRGDDAEDALALAEALIEGGIRAIEITLRT---------PGALEAIRALRKEFP---EALIGAGTVLT---PEQADAAI- 73 (190)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHHCC---CCEEEEEeCCC---HHHHHHHH-
Confidence 355679999999999999999988886321 123567888877653 23333333321 22222222
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d 370 (622)
..+ ..++|.|- + + .+.++..++. ++ .+|+|.- |.++..+.+ +.+.|
T Consensus 74 --~~G--a~~i~~p~-~-~----------------~~~~~~~~~~--~~----~~i~gv~--t~~e~~~A~----~~Gad 119 (190)
T cd00452 74 --AAG--AQFIVSPG-L-D----------------PEVVKAANRA--GI----PLLPGVA--TPTEIMQAL----ELGAD 119 (190)
T ss_pred --HcC--CCEEEcCC-C-C----------------HHHHHHHHHc--CC----cEECCcC--CHHHHHHHH----HCCCC
Confidence 222 56777652 1 1 2345555555 44 4567764 666655443 57999
Q ss_pred eEEEEEe
Q 007001 371 QVHISQF 377 (622)
Q Consensus 371 ~v~i~~y 377 (622)
++.+|+.
T Consensus 120 ~i~~~p~ 126 (190)
T cd00452 120 IVKLFPA 126 (190)
T ss_pred EEEEcCC
Confidence 9998653
No 283
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.39 E-value=1.8e+02 Score=30.34 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=41.3
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-hHHHHHHHHHHhc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-QSAMDTLIAKCKS 116 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-~~~~~~ii~~~k~ 116 (622)
|.++.|..-..+....=.+.+.+.|++.|++...+..++|++++-. +..+...++.+..
T Consensus 2 ~~~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~~ 61 (264)
T PRK03501 2 RRNLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRKTGF 61 (264)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHHhcc
Confidence 3467777666663333345566778899999887667799988877 7777777776643
No 284
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=34.26 E-value=2e+02 Score=28.72 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=82.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEE--EeecCCC-CCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 214 YTVESLVGRVRTVIADGVKEVW--LSSEDTG-AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~--L~g~d~~-~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-+.-.+-+|++.+.+.|+..+. +.|.++- .++ .+ +++++.|.+... -...+.+...+|....+ .+.+
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~--~g---~~~i~~i~~~~~--~~~DvHLMv~~P~~~i~---~~~~ 78 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLT--FG---PDIIKAIRKITD--LPLDVHLMVENPERYIE---EFAE 78 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB---B----HHHHHHHHTTSS--SEEEEEEESSSGGGHHH---HHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccccCCccc--CC---HHHHHHHhhcCC--CcEEEEeeeccHHHHHH---HHHh
Confidence 4456678899999999988655 4554331 111 11 678888876432 23567777667764333 3332
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d 370 (622)
. + ..++.+-+|+.++ ..+.++.+|++ |+.+ .+.+. |+...+.++. ++. .+|
T Consensus 79 ~---g--~~~i~~H~E~~~~--------------~~~~i~~ik~~--g~k~--Gialn-P~T~~~~~~~---~l~--~vD 129 (201)
T PF00834_consen 79 A---G--ADYITFHAEATED--------------PKETIKYIKEA--GIKA--GIALN-PETPVEELEP---YLD--QVD 129 (201)
T ss_dssp H---T---SEEEEEGGGTTT--------------HHHHHHHHHHT--TSEE--EEEE--TTS-GGGGTT---TGC--CSS
T ss_pred c---C--CCEEEEcccchhC--------------HHHHHHHHHHh--CCCE--EEEEE-CCCCchHHHH---Hhh--hcC
Confidence 2 2 4577788886543 55678999999 8877 44443 6654454433 233 356
Q ss_pred eEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHH
Q 007001 371 QVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFE 408 (622)
Q Consensus 371 ~v~i~~ysP~PGTpa~~~~~v~~~~~k~R~~~L~~l~~ 408 (622)
.+.+ ++..||..-..+ ....-+|.+++.++..
T Consensus 130 ~Vlv--MsV~PG~~Gq~f----~~~~~~KI~~l~~~~~ 161 (201)
T PF00834_consen 130 MVLV--MSVEPGFGGQKF----IPEVLEKIRELRKLIP 161 (201)
T ss_dssp EEEE--ESS-TTTSSB------HGGHHHHHHHHHHHHH
T ss_pred EEEE--EEecCCCCcccc----cHHHHHHHHHHHHHHH
Confidence 5544 456678654333 1223355555555544
No 285
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=33.98 E-value=1.8e+02 Score=27.18 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHh-CCCCEEEEEEEEcC-CCCCHHHHHHHHHHHHhcCCCeE
Q 007001 320 YTLSDFRTVVDTLIEL-VPGMQIATDIICGF-PGETDEDFNQTVNLIKEYKFPQV 372 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~-~pgi~i~td~IvGf-PGETeedf~eTl~fl~el~~d~v 372 (622)
.+...+.+.++.+++. .+++ -+++|- +.-.++++.+..+.+++++++.+
T Consensus 66 ~~~~~~~~~~~~L~~~~~~~~----~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 66 HGEIDCRGLREKCIEAGLGDI----LLYVGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred cCHHHHHHHHHHHHhcCCCCC----eEEEECCCCCCccChHHHHHHHHHcCCCEE
Confidence 4566788889999988 2333 455654 33456678888899999998765
No 286
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=33.80 E-value=1.7e+02 Score=27.28 Aligned_cols=60 Identities=13% Similarity=0.325 Sum_probs=36.7
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec--------------hHHHHHHHHHHhcCCCcEEEEc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------------QSAMDTLIAKCKSAKKPLVVAG 125 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT--------------~~~~~~ii~~~k~~~~~VVVgG 125 (622)
.+.+.+.|+.-..... +...|... +. ...+|+|+|.. .+.++++++++++.+++||+.+
T Consensus 36 ~~~v~n~g~~G~~~~~--~~~~l~~~----~~-~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 36 DVTVINAGVSGDTTAG--GLARLPAL----LA-QHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred CeEEEecCcCCcccHH--HHHHHHHH----HH-hcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4667777776554432 23333221 11 13679999865 3455678888888888888766
Q ss_pred c
Q 007001 126 C 126 (622)
Q Consensus 126 C 126 (622)
.
T Consensus 109 ~ 109 (177)
T cd01822 109 M 109 (177)
T ss_pred c
Confidence 4
No 287
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=33.80 E-value=72 Score=40.44 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC--CcEEEEccccc
Q 007001 77 YMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK--KPLVVAGCVPQ 129 (622)
Q Consensus 77 ~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~--~~VVVgGC~aq 129 (622)
.+.-.|+.+||++++- ...||+|.++. ...+...++.+++.+ .+|+|||-..+
T Consensus 770 iV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~~~g~~v~v~vGGa~~s 843 (1229)
T PRK09490 770 IVGVVLQCNNYEVIDLGVMVPAEKILETAKEENADIIGLSGLITPSLDEMVHVAKEMERQGFTIPLLIGGATTS 843 (1229)
T ss_pred HHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 4556788999998753 46799999987 566778888888776 57999995433
No 288
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=33.79 E-value=4.9e+02 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=18.6
Q ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 007001 341 IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374 (622)
Q Consensus 341 i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i 374 (622)
+..-+|..+|-|..+++ .+.+++.+++.+.+
T Consensus 116 vdGlIipDLP~ee~~~~---~~~~~~~gl~~I~l 146 (259)
T PF00290_consen 116 VDGLIIPDLPPEESEEL---REAAKKHGLDLIPL 146 (259)
T ss_dssp EEEEEETTSBGGGHHHH---HHHHHHTT-EEEEE
T ss_pred CCEEEEcCCChHHHHHH---HHHHHHcCCeEEEE
Confidence 45567778887655544 44567777765544
No 289
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.34 E-value=1.3e+02 Score=26.04 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCCcEEEEec----hHHHHHHHHHHhcCCCcEEEE
Q 007001 94 EEADIWLINT----QSAMDTLIAKCKSAKKPLVVA 124 (622)
Q Consensus 94 ~~ADlviINT----~~~~~~ii~~~k~~~~~VVVg 124 (622)
..||+||+-| -..+..+-+.+|+.+++++..
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 4579999988 344555556677788887764
No 290
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=2.1e+02 Score=31.13 Aligned_cols=74 Identities=9% Similarity=0.122 Sum_probs=52.3
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 376 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ 376 (622)
...|.+|.+-.+ ++.-...++.+++.+.++.++++ |..+...+=.=+-.+..+.+.+.++++.++++|.+-+.-
T Consensus 27 ADaVY~G~~~~~---~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~D 100 (347)
T COG0826 27 ADAVYIGEKEFG---LRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVAD 100 (347)
T ss_pred CCEEEeCCcccc---cccccccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcC
Confidence 578889987333 33323558999999999999999 864433222222344556689999999999999887753
No 291
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=33.13 E-value=64 Score=31.85 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=23.2
Q ss_pred hHHHHHHH-----HHHhcCCeee-CCCCCCcEEEEec
Q 007001 73 SDSEYMAG-----QLSAFGYALT-DNSEEADIWLINT 103 (622)
Q Consensus 73 ~Dse~m~~-----~L~~~G~~~v-~~~~~ADlviINT 103 (622)
-|.|.++- .++..|+..+ ..+..||+++|..
T Consensus 47 C~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillVeG 83 (181)
T PRK14817 47 CGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVG 83 (181)
T ss_pred HHHHHHHhcCccccHHHhceeeccCCCcceeEEEEEe
Confidence 67776653 3456777664 8899999999987
No 292
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=32.84 E-value=5.3e+02 Score=27.79 Aligned_cols=139 Identities=16% Similarity=0.207 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEee--cCCCCCCCCc--CCCH----HHHHHHHHHhCCCCCceeEEEeecCCcchhHHH
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSS--EDTGAYGRDI--GVNL----PILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g--~d~~~yg~d~--~~~l----~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 285 (622)
-|.++-++-++.+.+.|++.+-|+= +|....|-.. +..| .+|++++.+ +. ..+-++-+....+.
T Consensus 105 ~~~~~dl~~L~~~~~~GvR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~-Lg----IiiDlSH~s~kt~~--- 176 (313)
T COG2355 105 EPLGDDLDKLELFHALGVRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNE-LG----IIIDLSHLSDKTFW--- 176 (313)
T ss_pred ccccccHHHHHHHHHhCceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHh-cC----CEEEecccCCccHH---
Confidence 4566667888999999999987773 3333322211 1122 345555533 32 23444433333222
Q ss_pred HHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC----C--CHHHHHH
Q 007001 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG----E--TDEDFNQ 359 (622)
Q Consensus 286 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG----E--Teedf~e 359 (622)
+.+++.+.|-+ .=+.+.+.|..-.|+.+-++ ++.+++. |=.|...++..|-. . |.+|+.+
T Consensus 177 -Dvl~~s~~Pvi-------aSHSN~~al~~h~RNl~D~q----lkaI~~~--gGvIgv~~~~~fl~~~~~~~atldd~v~ 242 (313)
T COG2355 177 -DVLDLSKAPVV-------ASHSNARALVDHPRNLSDEQ----LKAIAET--GGVIGVNFIPAFLRPGGAARATLDDLVR 242 (313)
T ss_pred -HHHhccCCceE-------EecCCchhccCCCCCCCHHH----HHHHHhc--CCEEEEEeehhhccCCCCCCCCHHHHHH
Confidence 24444444422 33677888888888888665 5667777 76777788887755 3 8899999
Q ss_pred HHHHHHhc-CCCeEEE
Q 007001 360 TVNLIKEY-KFPQVHI 374 (622)
Q Consensus 360 Tl~fl~el-~~d~v~i 374 (622)
.++.+.++ +.+++.+
T Consensus 243 hI~h~v~~~G~dhVgl 258 (313)
T COG2355 243 HIDHFVELVGIDHVGL 258 (313)
T ss_pred HHHHHHHhcCcceeEe
Confidence 99887665 7787776
No 293
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=31.93 E-value=1.3e+02 Score=27.68 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCeee-----C-------CCCCCcEEEEec--------hHHHHHHHHHHhcCCCcEEEEcccc
Q 007001 75 SEYMAGQLSAFGYALT-----D-------NSEEADIWLINT--------QSAMDTLIAKCKSAKKPLVVAGCVP 128 (622)
Q Consensus 75 se~m~~~L~~~G~~~v-----~-------~~~~ADlviINT--------~~~~~~ii~~~k~~~~~VVVgGC~a 128 (622)
.+.|+..|...|+++. . +..++|.++|-| ...+...++.+..+++++.+-|++-
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~~avfgtgd 91 (140)
T TIGR01754 18 AFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSNVAIFGTGE 91 (140)
T ss_pred HHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCEEEEEEcCC
Confidence 3456666767787652 1 223468888877 2456677777765677776666653
No 294
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=31.87 E-value=6.4e+02 Score=26.63 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=80.1
Q ss_pred CcccCccCC---CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecC
Q 007001 201 YCKTKHARG---HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTN 277 (622)
Q Consensus 201 FC~ip~~rG---~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~ 277 (622)
||.+..--| .-.+.+.++=++-++.|.+.|+++|.+. ++..+.. -.+.++++.+....... .++..+-
T Consensus 4 ~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~g---fP~~~~~----e~e~~~~i~~~~~~~~~--~~~~al~ 74 (284)
T cd07942 4 WCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVG---FPSASQT----DFDFVRELIEEDLIPDD--VTIQVLT 74 (284)
T ss_pred ccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe---CCCCCHH----HHHHHHHHHHccCCCCC--CEEEEEc
Confidence 455542223 3467899999999999999999999875 3444332 13677777543100011 2222222
Q ss_pred CcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCE-EEEEEEEcCCCC-
Q 007001 278 PPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQ-IATDIICGFPGE- 352 (622)
Q Consensus 278 p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~-i~td~IvGfPGE- 352 (622)
+.. ...++...+...... ...+++.+ |.|+..+ +.+|+. ...+.+.+.++.++++ |+. +.+.|.+-|-+|
T Consensus 75 r~~-~~die~a~~~~~~~~-~~~v~i~~-~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~--g~~~~~~~~~~~~~~ED 149 (284)
T cd07942 75 QAR-EDLIERTFEALRGAK-KAIVHLYN-ATSPLQRRVVFGKSKEEIIEIAVDGAKLVKEL--AAKYPETDWRFEYSPES 149 (284)
T ss_pred CCC-hhhHHHHHHHhCCCC-CCEEEEEE-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh--cccccCceEEEEECCcc
Confidence 221 111222221110111 12566666 5566555 556654 3456677788888887 643 334555555552
Q ss_pred ---C-HHHHHHHHHHHHhc
Q 007001 353 ---T-DEDFNQTVNLIKEY 367 (622)
Q Consensus 353 ---T-eedf~eTl~fl~el 367 (622)
+ .+.+.+.++.+.+.
T Consensus 150 asr~~~~~l~~~~~~~~~~ 168 (284)
T cd07942 150 FSDTELDFALEVCEAVIDV 168 (284)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 3 33444455555444
No 295
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.55 E-value=1.9e+02 Score=26.53 Aligned_cols=62 Identities=10% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEcC-------CCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 323 SDFRTVVDTLIELVPGMQIATDIICGF-------PGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 323 e~~~~~I~~lr~~~pgi~i~td~IvGf-------PGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
+.+....+.+++.+|+..+..-|+-.. .|....++.+.++-+.+.+..++-+.++...||-.
T Consensus 17 ~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e 85 (127)
T cd03412 17 KTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHIIPGEE 85 (127)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHH
Confidence 345666666667777776666665300 01222345667777777788888888888877743
No 296
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.89 E-value=2.9e+02 Score=26.59 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=54.1
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEechHHHHHHHHHHhcCCCcEEEEccccccchhhhcc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKEL 137 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~~~ 137 (622)
..++.+.++.=.+ .+.+.+...| |..+ ..+.+++.+.++..+.++++.|..+||||-.+....+ ++
T Consensus 77 ~~~Iavv~~~~~~--~~~~~~~~ll---~~~i-------~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~--~~ 142 (176)
T PF06506_consen 77 GPKIAVVGYPNII--PGLESIEELL---GVDI-------KIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLAR--KL 142 (176)
T ss_dssp TSEEEEEEESS-S--CCHHHHHHHH---T-EE-------EEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHH--HT
T ss_pred CCcEEEEeccccc--HHHHHHHHHh---CCce-------EEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHH--Hc
Confidence 4789999985444 3466677777 4433 3456666777888999999999999999976644332 22
Q ss_pred cccEEEcCCchHHHHHHHHHHh
Q 007001 138 EGVSIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 138 ~~d~VvG~~~~~~l~ell~~~~ 159 (622)
..-.++-....+.+...++++.
T Consensus 143 gl~~v~i~sg~esi~~Al~eA~ 164 (176)
T PF06506_consen 143 GLPGVLIESGEESIRRALEEAL 164 (176)
T ss_dssp TSEEEESS--HHHHHHHHHHHH
T ss_pred CCcEEEEEecHHHHHHHHHHHH
Confidence 2223444445567777776643
No 297
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=30.77 E-value=61 Score=33.39 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=32.1
Q ss_pred ccEEEEE---ecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEE
Q 007001 58 TETIYMK---TFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLI 101 (622)
Q Consensus 58 ~~~v~i~---TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviI 101 (622)
.++||+. |-+..+|-.+ ..+...|...||.++++|++|-.|+=
T Consensus 50 ~ktVyv~vrNTSd~~~~~l~-~~i~~~L~~kGY~iv~~P~~A~Y~lQ 95 (243)
T PRK13731 50 ERTVFLQIKNTSDKDMSGLQ-GKIADAVKAKGYQVVTSPDKAYYWIQ 95 (243)
T ss_pred CceEEEEEeeCCCcchHHHH-HHHHHHHHhCCeEEecChhhceeeee
Confidence 6788875 5565444333 35677899999999999999998874
No 298
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=30.64 E-value=2.1e+02 Score=25.19 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=43.2
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeC------------CCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINT----QSAMDTLIAKCKSAKKPLV 122 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~------------~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV 122 (622)
++++ -+||..+..=...+...|...|+.... ...+-|++++-+ ...+.++++.++++|.++|
T Consensus 14 ~~i~--i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv 91 (139)
T cd05013 14 RRIY--IFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVI 91 (139)
T ss_pred CEEE--EEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEE
Confidence 4444 456667777778888888888874321 123457777766 4456677888888887765
Q ss_pred -EEcc
Q 007001 123 -VAGC 126 (622)
Q Consensus 123 -VgGC 126 (622)
+++-
T Consensus 92 ~iT~~ 96 (139)
T cd05013 92 AITDS 96 (139)
T ss_pred EEcCC
Confidence 5553
No 299
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=29.85 E-value=8.8e+02 Score=27.64 Aligned_cols=50 Identities=12% Similarity=0.002 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCC
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~--yg~d~~~~l~eLL~~l~~~l~ 264 (622)
...++++.-+..+-+.|+..|.+.|.-++. |+. ..++--+.|+.+.+.++
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rf-l~edpwerlr~~r~~~~ 83 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRF-LNEDPWERLRTLKKGLP 83 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcc-cCCCHHHHHHHHHHhCC
Confidence 466777777777777788877776654333 221 12333566677766665
No 300
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=29.79 E-value=6.8e+02 Score=26.30 Aligned_cols=119 Identities=14% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC---c---CCCHHHHHHHHHHhCCCCCceeEEEeecCCcc---hh
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD---I---GVNLPILLNAIVAELPPDGSTMLRIGMTNPPF---IL 282 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d---~---~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~---i~ 282 (622)
|.++.+++.+.+..+.+.|++.|..+.+|....+.+ . -..-.+|++.+....+ ....+-+. .+|.. ..
T Consensus 69 r~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~--~~f~igva-~~Pe~Hp~~~ 145 (281)
T TIGR00677 69 TNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYG--DYFCIGVA-GYPEGHPEAE 145 (281)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCC--CceEEEEE-ECCCCCCCCC
Confidence 345567888888888899999997776666543321 1 1235678888765332 12333332 35421 11
Q ss_pred HHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Q 007001 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF 349 (622)
Q Consensus 283 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGf 349 (622)
+...++..+.++ ++.|-+-+.. .=-|+.+.+.+.++.+++. |+.+ =+|.|+
T Consensus 146 ~~~~d~~~L~~K----------i~aGA~f~iT--Q~~Fd~~~~~~f~~~~~~~--gi~~--PIi~GI 196 (281)
T TIGR00677 146 SVELDLKYLKEK----------VDAGADFIIT--QLFYDVDNFLKFVNDCRAI--GIDC--PIVPGI 196 (281)
T ss_pred CHHHHHHHHHHH----------HHcCCCEeec--cceecHHHHHHHHHHHHHc--CCCC--CEEeec
Confidence 111122222221 0011111111 1136678888888888888 6654 457776
No 301
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=29.75 E-value=1.5e+02 Score=30.55 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 007001 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i 374 (622)
.+.+++...++.+.+..|...+..|+=.|| |++.++..+++.-+.+.+.+-+++
T Consensus 55 vtl~em~~~~~~I~r~~~~~pviaD~~~G~-g~~~~~~~~~~~~l~~aGa~gv~i 108 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPLALIVADLPFGA-YGAPTAAFELAKTFMRAGAAGVKI 108 (240)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEeCCCCC-CcCHHHHHHHHHHHHHcCCcEEEE
Confidence 588999999999999877778899999998 568788888888777788887776
No 302
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=29.64 E-value=6e+02 Score=29.17 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEe
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG 274 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~ 274 (622)
.+++.+++-++.+.+.|+..|.|-| +.... .+....+|++.|.+.++ ....+.+.
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD--taGll--~P~~~~~LV~~Lk~~~~--~~ipI~~H 206 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD--MAALL--KPQPAYDIVKGIKEACG--EDTRINLH 206 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC--CccCC--CHHHHHHHHHHHHHhCC--CCCeEEEE
Confidence 3899999999999999999999874 33222 23467888999887653 23445444
No 303
>TIGR01230 agmatinase agmatinase. Note: a history of early misannotation of members of this family is detailed in PUBMED:10931887.
Probab=29.49 E-value=6.6e+02 Score=26.07 Aligned_cols=151 Identities=13% Similarity=0.202 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH-------HHHHHH
Q 007001 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-------HLKEIA 289 (622)
Q Consensus 217 e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~-------~l~el~ 289 (622)
+.|-+.+..+.+.|..-|.+.|++..+|+ .++.+.+..+ ...-+.|. .|++.-++ +--.+.
T Consensus 80 ~~i~~~v~~~~~~~~~pi~lGGdHsis~~---------~i~al~~~~~--~~~vI~~D-AH~D~~~~~~g~~~~~~~~~~ 147 (275)
T TIGR01230 80 EKIQEHAEEFLEEGKFPVAIGGEHSITLP---------VIRAMAKKFG--KFAVVHFD-AHTDLRDEFDGGTLNHACPMR 147 (275)
T ss_pred HHHHHHHHHHHhcCCeEEEecCcchhhHH---------HHHHHHHhcC--CeEEEEEe-cccccccccCCCccccHhHHH
Confidence 34444445556678888888887777663 3444443322 23334443 33332111 111123
Q ss_pred HHHhCCCCceeecccCCCCCHHHHHhhcCC----CCHHHHHHHHHHHHHhCC--CCEEEE--EEE-------EcCC---C
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNRE----YTLSDFRTVVDTLIELVP--GMQIAT--DII-------CGFP---G 351 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~----~t~e~~~~~I~~lr~~~p--gi~i~t--d~I-------vGfP---G 351 (622)
.++..+ .+.+++|+++.++.-++.+++. ++ .++.+.++.+.+... .+.++. |.+ +|-| |
T Consensus 148 ~~~~~~--~~iv~iGiR~~~~~e~~~~~~~~~~~~~-~~i~~~~~~~l~~~~~~~vyis~DiDvlDps~aPg~~~p~pgG 224 (275)
T TIGR01230 148 RVIELG--LNVVQFGIRSGFKEENDFARENNIQVLK-REVDDVIAEVKQKVGDKPVYVTIDIDVLDPAFAPGTGTPEPGG 224 (275)
T ss_pred HHhhCC--CCEEEEEeCCCChHHHHHHHHcCCEEEe-hHHHHHHHHHHHHhCCCceEEEEeccccCcccCCCCCCCCCCC
Confidence 333322 3688999999887666555432 23 444333333322221 244444 444 1233 3
Q ss_pred CCHHHHHHHHHH-HHhcCCCeEEEEEeeeCCC
Q 007001 352 ETDEDFNQTVNL-IKEYKFPQVHISQFYPRPG 382 (622)
Q Consensus 352 ETeedf~eTl~f-l~el~~d~v~i~~ysP~PG 382 (622)
=|..++.+.+.. ++..++-.+.+.-|.|...
T Consensus 225 l~~~e~~~~~~~~~~~~~v~g~DivE~~P~~D 256 (275)
T TIGR01230 225 LTSDELINFFVRALKDDNVVGFDVVEVAPVYD 256 (275)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEEEEeCCCCC
Confidence 566777775544 3343555667777777633
No 304
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.47 E-value=4.9e+02 Score=24.59 Aligned_cols=71 Identities=11% Similarity=0.021 Sum_probs=46.5
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCC--------C------HHHHHHHHHH
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGE--------T------DEDFNQTVNL 363 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGE--------T------eedf~eTl~f 363 (622)
+..+.+......+.... ..+..+..+.++++ |+.+.+--....... . .+.+.+.+++
T Consensus 9 ~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~ 79 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEK-------DDEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDL 79 (213)
T ss_dssp HSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCcccccc-------hHHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHH
Confidence 45555555444443322 55677788888888 988655444333322 2 6788899999
Q ss_pred HHhcCCCeEEEEEe
Q 007001 364 IKEYKFPQVHISQF 377 (622)
Q Consensus 364 l~el~~d~v~i~~y 377 (622)
++.++...+.+...
T Consensus 80 a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 80 AKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHTBSEEEEECT
T ss_pred HHHhCCCceeecCc
Confidence 99999988877744
No 305
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=29.40 E-value=2.1e+02 Score=27.39 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=46.5
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeC-------CCCCCcEEEEec----hHHHHHHHHHHhcCCCcE-EEEcc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINT----QSAMDTLIAKCKSAKKPL-VVAGC 126 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~-------~~~~ADlviINT----~~~~~~ii~~~k~~~~~V-VVgGC 126 (622)
++|++. ||..+..=.+++...|...|....- ...+-|++|+-| ...+.++++.+|+.|.+| .+++.
T Consensus 34 ~~I~i~--G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~ 111 (179)
T cd05005 34 KRIFVY--GAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSN 111 (179)
T ss_pred CeEEEE--ecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence 566665 5556677777888888877765421 234568888777 455667888899999765 57775
Q ss_pred ccc
Q 007001 127 VPQ 129 (622)
Q Consensus 127 ~aq 129 (622)
...
T Consensus 112 ~~s 114 (179)
T cd05005 112 PDS 114 (179)
T ss_pred CCC
Confidence 444
No 306
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.92 E-value=6.5e+02 Score=25.79 Aligned_cols=133 Identities=8% Similarity=0.081 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEE--eecCCC-CCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWL--SSEDTG-AYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L--~g~d~~-~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 288 (622)
-+-++..+-+|++.+.+.|++.+++ .|+++- .+. .+ +.+++.+.+. -...+.+...+|.... +.+
T Consensus 20 l~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNit--fG---p~~i~~i~~~----~~~DvHLMv~~P~~~i---~~~ 87 (228)
T PRK08091 20 LASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFT--VG---AIAIKQFPTH----CFKDVHLMVRDQFEVA---KAC 87 (228)
T ss_pred hhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccc--cC---HHHHHHhCCC----CCEEEEeccCCHHHHH---HHH
Confidence 3456778899999999999887654 343331 111 11 5666666432 2246666656775322 222
Q ss_pred HHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 289 AEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 289 ~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
...+ +..+.+-+|+.. +..+.++++|+. |+.+.+.+.+. |+-..++++..++.
T Consensus 88 ---~~aG--ad~It~H~Ea~~--------------~~~~~l~~Ik~~--g~~~kaGlaln-P~Tp~~~i~~~l~~----- 140 (228)
T PRK08091 88 ---VAAG--ADIVTLQVEQTH--------------DLALTIEWLAKQ--KTTVLIGLCLC-PETPISLLEPYLDQ----- 140 (228)
T ss_pred ---HHhC--CCEEEEcccCcc--------------cHHHHHHHHHHC--CCCceEEEEEC-CCCCHHHHHHHHhh-----
Confidence 2222 568888888642 356788999999 88667788887 77677777655543
Q ss_pred CCeEEEEEeeeCCCCcc
Q 007001 369 FPQVHISQFYPRPGTPA 385 (622)
Q Consensus 369 ~d~v~i~~ysP~PGTpa 385 (622)
+|.+ -.++..||-.-
T Consensus 141 vD~V--LiMtV~PGfgG 155 (228)
T PRK08091 141 IDLI--QILTLDPRTGT 155 (228)
T ss_pred cCEE--EEEEECCCCCC
Confidence 4544 44555667543
No 307
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.58 E-value=8.6e+02 Score=28.53 Aligned_cols=124 Identities=10% Similarity=0.083 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHh
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 293 (622)
.+++.+++-++.+.+.|+..|.|-| +. |.-....+.+|++++.+.++ ..+.+..=+-..+. +....+...
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~D--t~--G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~Gla--~An~laAv~ 220 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKD--MA--GLLTPYAAYELVKALKEEVD----LPVQLHSHCTSGLA--PMTYLKAVE 220 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC--cC--CCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCCcH--HHHHHHHHH
Confidence 5899999999999999999999875 32 22223467888888877652 23444311111111 111222222
Q ss_pred CCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 294 HPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 294 ~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
. + +.+++..+-. |..+...-.....+..++.. |.. ++-..+.+.+.-++++++.
T Consensus 221 a-G-ad~vD~ai~g--------~g~~agn~~~e~vv~~L~~~--g~~---------~~idl~~l~~~s~~~~~~~ 274 (592)
T PRK09282 221 A-G-VDIIDTAISP--------LAFGTSQPPTESMVAALKGT--PYD---------TGLDLELLFEIAEYFREVR 274 (592)
T ss_pred h-C-CCEEEeeccc--------cCCCcCCHhHHHHHHHHHhC--CCC---------CccCHHHHHHHHHHHHHHH
Confidence 2 2 6777766653 44454444555566666554 432 3445666766667766664
No 308
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=28.54 E-value=6.6e+02 Score=28.40 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
.+++.+++-++.+.+.|+..|.|-| +..... +....+|++++.+.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D--t~G~l~--P~~v~~lv~alk~~~ 196 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD--MAGILT--PYVAYELVKRIKEAV 196 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCC--HHHHHHHHHHHHHhc
Confidence 6889999999999999999999974 332222 245778888888765
No 309
>PRK09271 flavodoxin; Provisional
Probab=28.43 E-value=1.9e+02 Score=27.46 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCeee-------------CCCCCCcEEEEec--------hHHHHHHHHHHhc---CCCcEEEEccc
Q 007001 75 SEYMAGQLSAFGYALT-------------DNSEEADIWLINT--------QSAMDTLIAKCKS---AKKPLVVAGCV 127 (622)
Q Consensus 75 se~m~~~L~~~G~~~v-------------~~~~~ADlviINT--------~~~~~~ii~~~k~---~~~~VVVgGC~ 127 (622)
.+.|+..|...|+++. .+..++|+|+|-| ...+..+++.++. .++++.|-|.+
T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 18 AREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred HHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 4566777888888641 1223578999877 2345566655543 45556555554
No 310
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=28.18 E-value=6.8e+02 Score=26.36 Aligned_cols=85 Identities=13% Similarity=0.273 Sum_probs=53.0
Q ss_pred eeecccCCCCCHHHHHhhcCC----CCHHHHH-----HHHHHHHHhC---C-CCEEEEEE--E-------EcCC---CCC
Q 007001 299 SFLHVPVQSGSDAVLSAMNRE----YTLSDFR-----TVVDTLIELV---P-GMQIATDI--I-------CGFP---GET 353 (622)
Q Consensus 299 ~~l~IGlQSgsd~vLk~MnR~----~t~e~~~-----~~I~~lr~~~---p-gi~i~td~--I-------vGfP---GET 353 (622)
+.++||+++.++.-.+.+++. ++.+++. ++++.+.+.+ . .+.++.|+ + +|-| |=|
T Consensus 167 ~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDvlDps~aPgv~tp~pgGl~ 246 (300)
T TIGR01229 167 NLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDGLDPSLAPATGTPVVGGLT 246 (300)
T ss_pred cEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccccCcccCCCCCCCCCCCCC
Confidence 688999999988766665443 3555543 2344444443 1 24444443 2 2333 568
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEEeeeCCCC
Q 007001 354 DEDFNQTVNLIKEY-KFPQVHISQFYPRPGT 383 (622)
Q Consensus 354 eedf~eTl~fl~el-~~d~v~i~~ysP~PGT 383 (622)
..++.+.++.+.+. ++-.+.+.-|.|.-.+
T Consensus 247 ~~e~~~~l~~i~~~~~v~g~DivE~~P~~D~ 277 (300)
T TIGR01229 247 FREGLLIMEMLYETGLLTALDVVEVNPTLDI 277 (300)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEECccccc
Confidence 88888888887643 5667778888887664
No 311
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=28.17 E-value=5.7e+02 Score=26.72 Aligned_cols=137 Identities=17% Similarity=0.110 Sum_probs=66.8
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeec-CCCCCCCCc--CCCHHHHHHHHHHhCCCCCceeEEEeecCCc--chhHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSE-DTGAYGRDI--GVNLPILLNAIVAELPPDGSTMLRIGMTNPP--FILEHL 285 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~-d~~~yg~d~--~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~--~i~~~l 285 (622)
....++++|++++....+.|..-+.+..- +.. |... ...+.++++.|.+..+ +.-+.+++-... ...+.+
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~--G~~s~d~~~~~e~~~~IR~~~p---d~iv~~Ttg~~~~~~~~~R~ 94 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDDED--GRPSLDPELYAEVVEAIRAACP---DLIVQPTTGGGGGPDPEERL 94 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-TTT--S-EE--HHHHHHHHHHHHHHST---TSEEEEESSTTTTSGHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCCCC--CCcCCCHHHHHHHHHHHHHHCC---CeEEEeCCCCCCCCCHHHHH
Confidence 45678999999999999999998888754 221 2221 1346788888887643 334444422211 122222
Q ss_pred HHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 007001 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365 (622)
Q Consensus 286 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 365 (622)
.-+..+ .+. .-.+.+|-=..+ -..+-=.++.+...+.++.++++ |+.+ .+.+= +..++.....+++
T Consensus 95 ~~v~~~--~pd-~asl~~gs~n~~---~~~~~~~n~~~~~~~~~~~~~e~--Gi~p--e~ev~----d~~~l~~~~~l~~ 160 (272)
T PF05853_consen 95 AHVEAW--KPD-MASLNPGSMNFG---TRDRVYINTPADARELARRMRER--GIKP--EIEVF----DPGHLRNARRLIE 160 (272)
T ss_dssp THHHHH----S-EEEEE-S-EEES---GGCSEE---HHHHHHHHHHHHHT--T-EE--EEEES----SHHHHHHHHHHHH
T ss_pred HHHHhc--CCC-eEEecccccccc---cCCceecCCHHHHHHHHHHHHHc--CCeE--EEEEE----cHHHHHHHHHHHH
Confidence 222222 232 122322211111 00000114667777888888887 7665 44442 3345555555555
Q ss_pred h
Q 007001 366 E 366 (622)
Q Consensus 366 e 366 (622)
+
T Consensus 161 ~ 161 (272)
T PF05853_consen 161 K 161 (272)
T ss_dssp T
T ss_pred C
Confidence 4
No 312
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.14 E-value=1.6e+02 Score=28.36 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE
Q 007001 321 TLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ 376 (622)
Q Consensus 321 t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ 376 (622)
+.+...++.+.+++.+||+.+... --|+ ...++-.+.++.+.+.++|.+.+..
T Consensus 55 ~~~~~~~~~~~l~~~yp~l~i~g~-~~g~--~~~~~~~~i~~~I~~~~pdiv~vgl 107 (171)
T cd06533 55 KPEVLEKAAERLRARYPGLKIVGY-HHGY--FGPEEEEEIIERINASGADILFVGL 107 (171)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEe-cCCC--CChhhHHHHHHHHHHcCCCEEEEEC
Confidence 344566678889999999987542 2222 2334444589999999999887775
No 313
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=28.01 E-value=9.7e+02 Score=27.54 Aligned_cols=51 Identities=16% Similarity=0.043 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCC--CCCCcCCCHHHHHHHHHHhCC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGA--YGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~--yg~d~~~~l~eLL~~l~~~l~ 264 (622)
..+.++.+.-++.+.+.|+..|...|+-++. ++ -..++--+.|+.+.+.++
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~r-fl~Edpwerlr~lr~~~~ 75 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIR-FLNEDPWERLRTFRKLMP 75 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhc-ccCCCHHHHHHHHHHhCC
Confidence 3467777777777777788877776543322 11 011233455666665554
No 314
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.99 E-value=6.5e+02 Score=25.56 Aligned_cols=134 Identities=9% Similarity=0.101 Sum_probs=71.2
Q ss_pred HHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCc
Q 007001 220 VGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 298 (622)
Q Consensus 220 v~Ei~~L~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~ 298 (622)
++-++.+.+ .|+++++++|-|-..-+. ..-.++++++.+... ..+.++ -.-. .++++..++..+ +
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~~~~---~~n~~~I~~i~~~~~----~pi~vG-GGIr----s~e~v~~~l~~G--a 99 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAKAQH---AREFDYIKSLRRLTT----KDIEVG-GGIR----TKSQIMDYFAAG--I 99 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccccCC---cchHHHHHHHHhhcC----CeEEEc-CCcC----CHHHHHHHHHCC--C
Confidence 335555666 699999999866443333 234688888876431 234443 1111 112344444433 5
Q ss_pred eeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-CEEEEEEEEc---CCC---CCHHHHHHHHHHHHhcCCCe
Q 007001 299 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-MQIATDIICG---FPG---ETDEDFNQTVNLIKEYKFPQ 371 (622)
Q Consensus 299 ~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg-i~i~td~IvG---fPG---ETeedf~eTl~fl~el~~d~ 371 (622)
.++-+|-....+ .+.++.+.+.||+ +.++.|.-=| ..| .+.-+..+.++.+.++++..
T Consensus 100 ~kvvigt~a~~~---------------~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ 164 (234)
T PRK13587 100 NYCIVGTKGIQD---------------TDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGG 164 (234)
T ss_pred CEEEECchHhcC---------------HHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCE
Confidence 677788776532 2233344444443 6677776433 222 23344566666677777754
Q ss_pred EEEEEeeeCCCC
Q 007001 372 VHISQFYPRPGT 383 (622)
Q Consensus 372 v~i~~ysP~PGT 383 (622)
+-+ .-.-+.||
T Consensus 165 ii~-tdi~~dGt 175 (234)
T PRK13587 165 IIY-TDIAKDGK 175 (234)
T ss_pred EEE-ecccCcCC
Confidence 433 33335666
No 315
>TIGR03555 F420_mer 5,10-methylenetetrahydromethanopterin reductase. Members of this protein family are 5,10-methylenetetrahydromethanopterin reductase, an F420-dependent enzyme of methanogenesis. It is restricted to the Archaea.
Probab=27.78 E-value=5.9e+02 Score=27.00 Aligned_cols=105 Identities=15% Similarity=0.312 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeec-------CCcchhHHHH
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 286 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~-------~p~~i~~~l~ 286 (622)
.+++++++.++..-+.|+..+++.. +.+.+ +..-++..+.... .++++++. +|..+.+...
T Consensus 9 ~~~~~~~~~a~~AE~~Gfd~~w~~e-h~~~~------~~~~~la~~a~~T-----~ri~lgt~v~~~~~r~P~~~A~~~a 76 (325)
T TIGR03555 9 DPITKIAYYVKLAEDNGFEYAWITD-HYNNR------NVYSTLTLLALNT-----NTIKLGPGVTNPYTRSPAITASAIA 76 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCcc------CHHHHHHHHHHhc-----CeeEEeeeeccCCCCCHHHHHHHHH
Confidence 4688899988888888999998875 43322 2244566666543 35555531 3333333222
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHh
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIEL 335 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~--t~e~~~~~I~~lr~~ 335 (622)
-|.. +..+ ++.+|+=+|++..+..++... ..+.+.+.++.+++.
T Consensus 77 tLd~-ls~G----R~~lGlg~G~~~~~~~~G~~~~~~~~~~~E~v~iir~l 122 (325)
T TIGR03555 77 TLDE-ISGG----RAVLGIGPGDKATFDAMGIEWVKPLTTIREAIEVIRQL 122 (325)
T ss_pred HHHH-HcCC----CEEEEecCCcHHHHHHcCCCcCchHHHHHHHHHHHHHH
Confidence 2222 2222 566777788877777776543 355667777777765
No 316
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=27.70 E-value=2.2e+02 Score=31.56 Aligned_cols=44 Identities=27% Similarity=0.275 Sum_probs=33.2
Q ss_pred EEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeecccc
Q 007001 435 LVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 481 (622)
Q Consensus 435 ~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~~~ 481 (622)
-+|+.. ...|+|++ .++|+.|+|+|+...+....|++++..++.
T Consensus 7 Gv~~~~-~~~vfV~~--~lpGe~v~~~i~~~~~~~~~~~~~~i~~~S 50 (431)
T TIGR00479 7 GVARFN-GKVVFVPN--ALPGEKVEVRVTKVKRQYALARVKKIREPS 50 (431)
T ss_pred EEEEEC-CEEEEeCC--CCCCCEEEEEEEEecCceeEEEeeeecCCC
Confidence 357653 35677763 478999999999988888899988775543
No 317
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.32 E-value=6.9e+02 Score=25.57 Aligned_cols=127 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHh--
Q 007001 216 VESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR-- 293 (622)
Q Consensus 216 ~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~-- 293 (622)
++....-++.+.+.|...|.|.-+..... .++++.|.+ ......+. +||..-.+.++.+.....
T Consensus 70 V~~p~~~i~~fa~agad~It~H~E~~~~~--------~r~i~~Ik~-----~G~kaGv~-lnP~Tp~~~i~~~l~~vD~V 135 (220)
T COG0036 70 VENPDRYIEAFAKAGADIITFHAEATEHI--------HRTIQLIKE-----LGVKAGLV-LNPATPLEALEPVLDDVDLV 135 (220)
T ss_pred cCCHHHHHHHHHHhCCCEEEEEeccCcCH--------HHHHHHHHH-----cCCeEEEE-ECCCCCHHHHHHHHhhCCEE
Q ss_pred -----CCCCceeecccCCCCCHHHHHhhcCCCCHHH-------------HHHHHHHHHHhCCCCEEEEEEEEcCCCCCHH
Q 007001 294 -----HPCVYSFLHVPVQSGSDAVLSAMNREYTLSD-------------FRTVVDTLIELVPGMQIATDIICGFPGETDE 355 (622)
Q Consensus 294 -----~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~-------------~~~~I~~lr~~~pgi~i~td~IvGfPGETee 355 (622)
.|+ +|=|++.+++|+++++-...-+ -.+.+..+.++-.++.+....+++-+.
T Consensus 136 llMsVnPG------fgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d---- 205 (220)
T COG0036 136 LLMSVNPG------FGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGADD---- 205 (220)
T ss_pred EEEeECCC------CcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCcc----
Q ss_pred HHHHHHHHHHhc
Q 007001 356 DFNQTVNLIKEY 367 (622)
Q Consensus 356 df~eTl~fl~el 367 (622)
..++++.++..
T Consensus 206 -~~~~i~~~~~~ 216 (220)
T COG0036 206 -YKATIRELRGE 216 (220)
T ss_pred -HHHHHHHHHHH
No 318
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=26.86 E-value=2.1e+02 Score=29.11 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=43.7
Q ss_pred EecccccchhHHHHHHHHHHhcCCeee------------CCCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE-EEcc
Q 007001 64 KTFGCSHNQSDSEYMAGQLSAFGYALT------------DNSEEADIWLINT----QSAMDTLIAKCKSAKKPLV-VAGC 126 (622)
Q Consensus 64 ~TlGC~~N~~Dse~m~~~L~~~G~~~v------------~~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV-VgGC 126 (622)
.-+||-.+..=.+.+...|...|.... ....+-|++++-| .+...+.++.+|+.|.+|| +++-
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~ 83 (268)
T TIGR00393 4 VIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAFTGS 83 (268)
T ss_pred EEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECC
Confidence 345555777777888888888787642 1234568888876 4566778899999997655 5653
No 319
>PRK10425 DNase TatD; Provisional
Probab=26.84 E-value=4.1e+02 Score=27.51 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH----HHHHHH
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE----HLKEIA 289 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~----~l~el~ 289 (622)
...++++++++ +.|+..+..+|.+... +.+. .++.+..+ ..+..++ +||....+ .++.+.
T Consensus 15 ~d~~~vl~~a~---~~gv~~~i~~~~~~~~--------~~~~-~~l~~~~~---~v~~~~G-iHP~~~~~~~~~~~~~l~ 78 (258)
T PRK10425 15 KDRDDVVARAF---AAGVNGMLITGTNLRE--------SQQA-QKLARQYP---SCWSTAG-VHPHDSSQWQAATEEAII 78 (258)
T ss_pred ccHHHHHHHHH---HCCCCEEEEeCCCHHH--------HHHH-HHHHHhCC---CEEEEEE-eCcCccccCCHHHHHHHH
Confidence 35666666654 5688888877654322 2232 33344343 3566677 78876532 344455
Q ss_pred HHHhCCCCceee-cccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 290 EVLRHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 290 ~l~~~~~v~~~l-~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.++..+. +..| .+|+.=.-+.- .+....+-|.+.++.+++. +..+..+.- +.++++++.+++.
T Consensus 79 ~~~~~~~-~vaIGEiGLDy~~~~~----~~~~Q~~vF~~ql~lA~~~--~~Pv~iH~r--------~a~~~~l~iL~~~ 142 (258)
T PRK10425 79 ELAAQPE-VVAIGECGLDFNRNFS----TPEEQERAFVAQLAIAAEL--NMPVFMHCR--------DAHERFMALLEPW 142 (258)
T ss_pred HhccCCC-EEEEeeeeeccccCCC----CHHHHHHHHHHHHHHHHHh--CCCeEEEEe--------CchHHHHHHHHHh
Confidence 5554443 3344 36665321100 0111234567777777887 655544433 2335566666653
No 320
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.70 E-value=2e+02 Score=30.28 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=40.2
Q ss_pred EEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-------------------hHHHHHHHHHHhcCCCcEE-
Q 007001 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-------------------QSAMDTLIAKCKSAKKPLV- 122 (622)
Q Consensus 63 i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-------------------~~~~~~ii~~~k~~~~~VV- 122 (622)
+.|.+=-.|..|++.|.. . .||+++++. .+.++++.+.+++.++.|+
T Consensus 151 l~T~~yvf~~e~A~~M~~----A---------GaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~ 217 (268)
T PF09370_consen 151 LFTTAYVFNEEQARAMAE----A---------GADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIV 217 (268)
T ss_dssp -EE--EE-SHHHHHHHHH----H---------T-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EE
T ss_pred CeeeeeecCHHHHHHHHH----c---------CCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 344444456666665552 2 489999876 2234456677777776433
Q ss_pred --EEccccccchh-h----hccc-ccEEEcCCchHHHH
Q 007001 123 --VAGCVPQGSRD-L----KELE-GVSIVGVQQIDRVV 152 (622)
Q Consensus 123 --VgGC~aq~~pe-~----~~~~-~d~VvG~~~~~~l~ 152 (622)
=||+.++ |+ . ..-+ .+-++|....+++|
T Consensus 218 l~hGGPI~~--p~D~~~~l~~t~~~~Gf~G~Ss~ERlP 253 (268)
T PF09370_consen 218 LCHGGPIAT--PEDAQYVLRNTKGIHGFIGASSMERLP 253 (268)
T ss_dssp EEECTTB-S--HHHHHHHHHH-TTEEEEEESTTTTHHH
T ss_pred EEeCCCCCC--HHHHHHHHhcCCCCCEEecccchhhcc
Confidence 3576655 43 2 2334 45699999988887
No 321
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=25.58 E-value=6.9e+02 Score=26.64 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC-CcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHh
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGR-DIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~-d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 293 (622)
++++++++++.+.+.|++.+.+-.... +.. +....-.+.++++.+.++ ....+++.. |-..-.+...++.+.+.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~--~~~~~~~~~d~~~v~~ir~~~g--~~~~l~vDa-N~~~~~~~a~~~~~~l~ 213 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGP--DSGGEDLREDLARVRAVREAVG--PDVDLMVDA-NGRWDLAEAIRLARALE 213 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC--CcchHHHHHHHHHHHHHHHhhC--CCCEEEEEC-CCCCCHHHHHHHHHHhC
Confidence 789999999999999999887742110 100 000123677888887664 455666652 32211222223333333
Q ss_pred CCCCceeecccCCCCCHHHHHhhcC
Q 007001 294 HPCVYSFLHVPVQSGSDAVLSAMNR 318 (622)
Q Consensus 294 ~~~v~~~l~IGlQSgsd~vLk~MnR 318 (622)
..+ +.++.=|+...+-.-++.+++
T Consensus 214 ~~~-i~~iEqP~~~~~~~~~~~l~~ 237 (357)
T cd03316 214 EYD-LFWFEEPVPPDDLEGLARLRQ 237 (357)
T ss_pred ccC-CCeEcCCCCccCHHHHHHHHH
Confidence 323 457777776655555554443
No 322
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=25.56 E-value=5.4e+02 Score=26.44 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 007001 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R 399 (622)
.+.+++.+.++.+.... ++.+..|+=-|| |.+...+.+|++-+.+.+..-+++--- +-|. ..-.-+|.++..+|
T Consensus 52 lt~~e~~~~~~~I~~~~-~iPv~vD~d~Gy-G~~~~~v~~tv~~~~~aG~agi~IEDq--~~~~--~~~~l~~~ee~~~k 125 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV-SIPVIVDADTGY-GNDPENVARTVRELERAGAAGINIEDQ--RCGH--GGKQLVSPEEMVAK 125 (238)
T ss_dssp S-HHHHHHHHHHHHHHS-SSEEEEE-TTTS-SSSHHHHHHHHHHHHHCT-SEEEEESB--STTT--STT-B--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh-cCcEEEEccccc-CchhHHHHHHHHHHHHcCCcEEEeecc--ccCC--CCCceeCHHHHHHH
Confidence 47889999999999875 799999999999 889999999999999999998888665 3331 11113577777777
Q ss_pred HHHHHHHH
Q 007001 400 SRELTSVF 407 (622)
Q Consensus 400 ~~~L~~l~ 407 (622)
.+...+..
T Consensus 126 I~Aa~~a~ 133 (238)
T PF13714_consen 126 IRAAVDAR 133 (238)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66555543
No 323
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.45 E-value=1.4e+02 Score=27.53 Aligned_cols=62 Identities=19% Similarity=0.273 Sum_probs=41.0
Q ss_pred ccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-hHHHHHHHHHHhcCCCcEEEEccccccchhh
Q 007001 67 GCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDL 134 (622)
Q Consensus 67 GC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~ 134 (622)
|=..|.+|.......++..- . ...|.++|-| +..+..+++++++.|++|++.|-.....+++
T Consensus 77 ~~~~~~~D~~l~~d~~~~~~-~-----~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~~s~~L 139 (149)
T cd06167 77 GSGKKGVDVALAIDALELAY-K-----RRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAKTSREL 139 (149)
T ss_pred CCcccCccHHHHHHHHHHhh-h-----cCCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCccChHHH
Confidence 45668888877766665431 1 1345555555 7778888899999999998888653333343
No 324
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=25.22 E-value=6.8e+02 Score=24.84 Aligned_cols=137 Identities=11% Similarity=0.137 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCc
Q 007001 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVY 298 (622)
Q Consensus 219 Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~ 298 (622)
.++-++.+.+.|++++++++.|-..-|.. .-.++++++.+... ..+.++ -.... .+++..+...+ +
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g~~---~~~~~i~~i~~~~~----~pi~~g-gGI~~----~ed~~~~~~~G--a 95 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEGGP---VNLPVIKKIVRETG----VPVQVG-GGIRS----LEDVEKLLDLG--V 95 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCC---CcHHHHHHHHHhcC----CCEEEe-CCcCC----HHHHHHHHHcC--C
Confidence 34445556678999999987654433432 22577788876532 223332 11111 12233333332 4
Q ss_pred eeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc------CCCCCHHHHHHHHHHHHhcCCCeE
Q 007001 299 SFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICG------FPGETDEDFNQTVNLIKEYKFPQV 372 (622)
Q Consensus 299 ~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvG------fPGETeedf~eTl~fl~el~~d~v 372 (622)
..+-+|-.... +.+.+.+.++.+... .+.+..|+--| .-..+..+..+.++.+.+.+++.+
T Consensus 96 ~~vvlgs~~l~-----------d~~~~~~~~~~~g~~--~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~i 162 (230)
T TIGR00007 96 DRVIIGTAAVE-----------NPDLVKELLKEYGPE--RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGI 162 (230)
T ss_pred CEEEEChHHhh-----------CHHHHHHHHHHhCCC--cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEE
Confidence 45555533322 123444444444311 35566665422 211223455667777888899888
Q ss_pred EEEEeeeCCCC
Q 007001 373 HISQFYPRPGT 383 (622)
Q Consensus 373 ~i~~ysP~PGT 383 (622)
.+...+. .||
T Consensus 163 i~~~~~~-~g~ 172 (230)
T TIGR00007 163 IYTDISR-DGT 172 (230)
T ss_pred EEEeecC-CCC
Confidence 8776553 344
No 325
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.12 E-value=7.4e+02 Score=25.18 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEE--EeecCCCCCCCCcCCCHHHHHHHHHHh-CCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVW--LSSEDTGAYGRDIGVNLPILLNAIVAE-LPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~--L~g~d~~~yg~d~~~~l~eLL~~l~~~-l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
+-+.-.+-+|++.+.+.|++.++ +.|+++-- ....+ ++.++.+.+. .. -...+.+...+|.... +.+.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVP-N~tfg---~~~i~~lr~~~~~--~~~dvHLMv~~P~~~i---~~~~ 82 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWVHFDVMDNHYVP-NLTIG---PMVCQALRKHGIT--APIDVHLMVEPVDRIV---PDFA 82 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCccCC-CcccC---HHHHHHHHhhCCC--CCEEEEeccCCHHHHH---HHHH
Confidence 45667888999999998987755 44443311 00111 5677777654 12 2255666655665332 2222
Q ss_pred HHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 369 (622)
.. + +..+.+-+|+.. +..+.++.+|++ |+.. .+-+. |+-..+.++..++ . +
T Consensus 83 ---~~-g-ad~I~~H~Ea~~--------------~~~~~l~~Ir~~--g~k~--Glaln-P~T~~~~i~~~l~---~--v 133 (223)
T PRK08745 83 ---DA-G-ATTISFHPEASR--------------HVHRTIQLIKSH--GCQA--GLVLN-PATPVDILDWVLP---E--L 133 (223)
T ss_pred ---Hh-C-CCEEEEcccCcc--------------cHHHHHHHHHHC--CCce--eEEeC-CCCCHHHHHHHHh---h--c
Confidence 22 2 567778888632 356788999999 7654 55555 7766666655544 2 3
Q ss_pred CeEEEEEeeeCCCCccccC
Q 007001 370 PQVHISQFYPRPGTPAARM 388 (622)
Q Consensus 370 d~v~i~~ysP~PGTpa~~~ 388 (622)
|. +-.++..||-.-.++
T Consensus 134 D~--VlvMtV~PGf~GQ~f 150 (223)
T PRK08745 134 DL--VLVMSVNPGFGGQAF 150 (223)
T ss_pred CE--EEEEEECCCCCCccc
Confidence 43 445566778665444
No 326
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=24.96 E-value=3.1e+02 Score=24.70 Aligned_cols=60 Identities=7% Similarity=0.099 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEE-cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccc
Q 007001 322 LSDFRTVVDTLIELVPGMQIATDIIC-GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAA 386 (622)
Q Consensus 322 ~e~~~~~I~~lr~~~pgi~i~td~Iv-GfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~ 386 (622)
.+.+.+..+.+++..|+..+.+.|+= +.| ++.+.++.+.+.+..++.+.||...+|--..
T Consensus 17 ~~~~~~~~~~l~~~~~~~~v~~afle~~~P-----~l~~~l~~l~~~g~~~v~vvPlfl~~G~h~~ 77 (126)
T PRK00923 17 KEVVTKIAEKIKEKHPFYIVEVGFMEFNEP-----TIPEALKKLIGTGADKIIVVPVFLAHGVHTK 77 (126)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEEEcCCC-----CHHHHHHHHHHcCCCEEEEEchhhccCcccc
Confidence 35777888888887677777777663 555 5888999999999999999999999987543
No 327
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=24.87 E-value=9.4e+02 Score=26.30 Aligned_cols=136 Identities=20% Similarity=0.259 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCC------------------CceeEEE
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPD------------------GSTMLRI 273 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~------------------~~~~iri 273 (622)
...+++.-+++|++|.+.|..-+.++-++.- -.+.+.+|.+.++.+ +...+|
T Consensus 31 ~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e---------~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~R- 100 (361)
T COG0821 31 DTADVEATVAQIKALERAGCDIVRVTVPDME---------AAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVR- 100 (361)
T ss_pred CcccHHHHHHHHHHHHHcCCCEEEEecCCHH---------HHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEE-
Confidence 3458899999999999999887777643211 133444444332211 123344
Q ss_pred eecCCcchh--HHHHHHHHHHhCCCCceeecccCCCC--CHHHHHhhcCCCCHHH----HHHHHHHHHHhCCCCEEEEEE
Q 007001 274 GMTNPPFIL--EHLKEIAEVLRHPCVYSFLHVPVQSG--SDAVLSAMNREYTLSD----FRTVVDTLIELVPGMQIATDI 345 (622)
Q Consensus 274 ~~~~p~~i~--~~l~el~~l~~~~~v~~~l~IGlQSg--sd~vLk~MnR~~t~e~----~~~~I~~lr~~~pgi~i~td~ 345 (622)
+||-.+- +.+.++.+.++..+. -+-||+-+| +.++|+++..+ |.|. .++-++.+-+. |+. +|
T Consensus 101 --INPGNig~~~~v~~vVe~Ak~~g~--piRIGVN~GSLek~~~~ky~~p-t~ealveSAl~~a~~~e~l--~f~---~i 170 (361)
T COG0821 101 --INPGNIGFKDRVREVVEAAKDKGI--PIRIGVNAGSLEKRLLEKYGGP-TPEALVESALEHAELLEEL--GFD---DI 170 (361)
T ss_pred --ECCcccCcHHHHHHHHHHHHHcCC--CEEEecccCchhHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC--CCC---cE
Confidence 3555442 234556666655543 455666655 56777777644 4443 34444555555 444 78
Q ss_pred EEcCCCCCHHHHHHHHHHHHhc
Q 007001 346 ICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 346 IvGfPGETeedf~eTl~fl~el 367 (622)
++-.-.-+..+..+..+.+.+.
T Consensus 171 ~iS~K~Sdv~~~v~aYr~lA~~ 192 (361)
T COG0821 171 KVSVKASDVQLMVAAYRLLAKR 192 (361)
T ss_pred EEEEEcCCHHHHHHHHHHHHHh
Confidence 8887777777777776666543
No 328
>PRK05474 xylose isomerase; Provisional
Probab=24.86 E-value=5.3e+02 Score=29.03 Aligned_cols=143 Identities=13% Similarity=0.237 Sum_probs=72.9
Q ss_pred HHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCce--eEEEe-ecCCcchh-----------H----H
Q 007001 226 VIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGST--MLRIG-MTNPPFIL-----------E----H 284 (622)
Q Consensus 226 L~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~l~~~l~~~~~~--~iri~-~~~p~~i~-----------~----~ 284 (622)
+.+.|+..+.|.|.|+...|.... .+|.++++.+.+.+...+.. |.+-. +.+|.+.. . .
T Consensus 88 ~~kLg~~~~~FHD~D~~peg~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tnpd~~Vra~A~~q 167 (437)
T PRK05474 88 FTKLGVPYYCFHDVDVAPEGASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDVFAYAAAQ 167 (437)
T ss_pred HHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccCCcCCCCCHHHHHHHHHH
Confidence 666799999999999988876542 24566666665554433332 22211 12232221 0 0
Q ss_pred HHHHHHHHhCCCCceeecccCCCCCHHHH-HhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCC-----HHHH
Q 007001 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGET-----DEDF 357 (622)
Q Consensus 285 l~el~~l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGf-PGET-----eedf 357 (622)
.++-.++.+.-+.-.++.-|=+-|-+..| ..|+| -.+.+.+.++.+.++.|++-+...|.+=. |-|- .-|.
T Consensus 168 vk~alD~~~eLGge~yV~WgGREGye~~~ntD~~~--e~d~~~~~l~~v~dYa~~iGf~~~f~IEPKP~EPr~hqyd~d~ 245 (437)
T PRK05474 168 VKTALDATKRLGGENYVFWGGREGYETLLNTDLKR--EREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPTKHQYDYDA 245 (437)
T ss_pred HHHHHHHHHHhCCCeEEECCCcccccchhhcCHHH--HHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCCCCccccccH
Confidence 11111111111112333333333333332 22322 23567777777777766664444444433 4443 2467
Q ss_pred HHHHHHHHhcCCC
Q 007001 358 NQTVNLIKEYKFP 370 (622)
Q Consensus 358 ~eTl~fl~el~~d 370 (622)
.-++-|+++++.+
T Consensus 246 at~l~fl~~~gl~ 258 (437)
T PRK05474 246 ATVYGFLKQYGLE 258 (437)
T ss_pred HHHHHHHHHhCCc
Confidence 7888888888875
No 329
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.81 E-value=2.8e+02 Score=26.12 Aligned_cols=63 Identities=8% Similarity=0.099 Sum_probs=38.6
Q ss_pred EEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec--------------hHHHHHHHHHHhcCCCcEEEEcc
Q 007001 61 IYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT--------------QSAMDTLIAKCKSAKKPLVVAGC 126 (622)
Q Consensus 61 v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT--------------~~~~~~ii~~~k~~~~~VVVgGC 126 (622)
+.+.+.|..-+... .+...|.+. + ...++|+|+|+- .+.++++++++++.++++|+.+.
T Consensus 32 ~~v~n~g~~G~~~~--~~l~~l~~~-~----~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~ 104 (183)
T cd04501 32 KEVINRGINGDTTS--QMLVRFYED-V----IALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASP 104 (183)
T ss_pred CeEEecCcCCccHH--HHHHHHHHH-H----HhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 44566666555543 344444432 1 123579988875 44566788888888888888776
Q ss_pred cccc
Q 007001 127 VPQG 130 (622)
Q Consensus 127 ~aq~ 130 (622)
.|..
T Consensus 105 ~p~~ 108 (183)
T cd04501 105 LPVD 108 (183)
T ss_pred CCcC
Confidence 5543
No 330
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=24.61 E-value=3.4e+02 Score=27.14 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=37.2
Q ss_pred CCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEE
Q 007001 417 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEV 474 (622)
Q Consensus 417 vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~ 474 (622)
.|+..++-++..+.+| .-+++... ..++++ ...+|+.|.|+|+...+....|++
T Consensus 147 ~~e~~~v~Ie~l~~~G-~GVak~~g-~~vfV~--galpGE~V~vri~k~kk~~~~a~~ 200 (201)
T PRK12336 147 EGKTYEVEITGTGRKG-DGVAKKGK-YTIFVP--GAKKGEVVKVKIKKISGNLAFAER 200 (201)
T ss_pred cCCEEEEEEEEccCCC-ceEEEECC-EEEEeC--CCCCCCEEEEEEEEecCCceeEEe
Confidence 3667788888876554 34576544 566765 346899999999988766555543
No 331
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.50 E-value=8.4e+02 Score=25.60 Aligned_cols=92 Identities=21% Similarity=0.270 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhC
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRH 294 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~ 294 (622)
++++++++++.+.+.|++.|-+-- |.+. ....+.++++.+.++ ...+++.. |-..-.+...++.+.+..
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~------g~~~-~~d~~~v~~lr~~~g---~~~l~vD~-n~~~~~~~A~~~~~~l~~ 202 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL------GGDL-EDDIERIRAIREAAP---DARLRVDA-NQGWTPEEAVELLRELAE 202 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe------CCCh-hhHHHHHHHHHHhCC---CCeEEEeC-CCCcCHHHHHHHHHHHHh
Confidence 689999999999999999887631 1111 234678888887653 34566652 322111222233333333
Q ss_pred CCCceeecccCCCCCHHHHHhhcC
Q 007001 295 PCVYSFLHVPVQSGSDAVLSAMNR 318 (622)
Q Consensus 295 ~~v~~~l~IGlQSgsd~vLk~MnR 318 (622)
.+ ..++.=|+...+-+.++.+.+
T Consensus 203 ~~-l~~iEeP~~~~d~~~~~~L~~ 225 (316)
T cd03319 203 LG-VELIEQPVPAGDDDGLAYLRD 225 (316)
T ss_pred cC-CCEEECCCCCCCHHHHHHHHh
Confidence 33 456776776545555655544
No 332
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=24.46 E-value=2.3e+02 Score=29.78 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=47.3
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeee------------CCCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT------------DNSEEADIWLINT----QSAMDTLIAKCKSAKKPLV 122 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v------------~~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV 122 (622)
++|||...| .+..=.+++...|...|+... ....+-|++++-| .+...++++.+|++|.+||
T Consensus 43 ~~I~i~G~G--~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI 120 (321)
T PRK11543 43 GKVVVSGIG--KSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDKSIALL 120 (321)
T ss_pred CcEEEEecC--hhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Confidence 367776666 677778888999998888543 1134568888766 4566778899999997755
Q ss_pred -EEcc
Q 007001 123 -VAGC 126 (622)
Q Consensus 123 -VgGC 126 (622)
++|-
T Consensus 121 ~iT~~ 125 (321)
T PRK11543 121 AMTGK 125 (321)
T ss_pred EEECC
Confidence 6664
No 333
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=24.40 E-value=6.4e+02 Score=24.22 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=27.4
Q ss_pred eecccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEE-EEEEEcCC
Q 007001 300 FLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIA-TDIICGFP 350 (622)
Q Consensus 300 ~l~IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pgi~i~-td~IvGfP 350 (622)
.+++-+.++. .|+| |.+.+++.++++.+.+. |++.+. ..+-+|..
T Consensus 108 ~v~lrv~~g~-----~~~R~G~~~~e~~~~~~~i~~~-~~l~l~Gl~~H~~~~ 154 (211)
T cd06808 108 RVLLRIDTGD-----ENGKFGVRPEELKALLERAKEL-PHLRLVGLHTHFGSA 154 (211)
T ss_pred eEEEEEcCCC-----CCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEEEecCCC
Confidence 4566666654 5667 56778888888888664 445432 34444443
No 334
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=23.90 E-value=5.8e+02 Score=27.50 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHh
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 293 (622)
.++++++++++.+++.|++.+-+- + |.+. ..-.+.++++.+.++ +...+++. .|-..-.+...++.+.+.
T Consensus 137 ~~~e~~~~~a~~~~~~Gf~~~Kik---v---g~~~-~~d~~~v~~vRe~~G--~~~~l~vD-aN~~~~~~~A~~~~~~l~ 206 (352)
T cd03328 137 YDDDRLREQLSGWVAQGIPRVKMK---I---GRDP-RRDPDRVAAARRAIG--PDAELFVD-ANGAYSRKQALALARAFA 206 (352)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee---c---CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 478999999999999999988763 1 1110 112577888887775 45667766 333221222222323222
Q ss_pred CCCCceeecccCCCCCHHHHHhhcC
Q 007001 294 HPCVYSFLHVPVQSGSDAVLSAMNR 318 (622)
Q Consensus 294 ~~~v~~~l~IGlQSgsd~vLk~MnR 318 (622)
.-+ ..++.=|+...+-+-++.+++
T Consensus 207 ~~~-~~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 207 DEG-VTWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred HhC-cchhhCCCChhhHHHHHHHHh
Confidence 222 345666666555555555444
No 335
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=23.90 E-value=90 Score=32.17 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=25.6
Q ss_pred cccchhHHHHH-HHHHHhcCCeeeCCCCCCcEEEEec
Q 007001 68 CSHNQSDSEYM-AGQLSAFGYALTDNSEEADIWLINT 103 (622)
Q Consensus 68 C~~N~~Dse~m-~~~L~~~G~~~v~~~~~ADlviINT 103 (622)
|...++..|.. .+.|...+ -.|.++++||+++|-.
T Consensus 32 ~~~~~~~~e~~l~~~l~~s~-~~T~dp~eAdlF~vP~ 67 (302)
T PF03016_consen 32 YETSQYALEVILHEALLNSP-FRTDDPEEADLFFVPF 67 (302)
T ss_pred cccccchHHHHHHHHHHhCC-cEeCCHHHCeEEEEEc
Confidence 66667777654 45555554 5788999999999975
No 336
>PRK01722 formimidoylglutamase; Provisional
Probab=23.89 E-value=8.9e+02 Score=25.71 Aligned_cols=156 Identities=14% Similarity=0.240 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHH------HHHHHH
Q 007001 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH------LKEIAE 290 (622)
Q Consensus 217 e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~------l~el~~ 290 (622)
+.|-+.+..+.+.|..-|.|.|++..+|+ .++.+.+........-+.|. .|.+.-+.. ---+..
T Consensus 104 ~~i~~~v~~~~~~g~~pi~lGGdHsit~~---------~~~al~~~~~~~~i~vI~~D-AH~Dl~~~~~~~~~hg~~~~~ 173 (320)
T PRK01722 104 QALADTVGHCLRPNMRTIVLGGGHEIAFG---------SFAGVADAFPKGKVGIINFD-AHHDLRNLEDGGPSSGTPFRQ 173 (320)
T ss_pred HHHHHHHHHHHhCCCeeEEEcCchHHHHH---------HHHHHHhhccCCcEEEEEEe-cCccCCCCCCCCCCCChHHHH
Confidence 45555566666778888888887766653 23444331110022334443 222211100 000222
Q ss_pred HHh--CC--CCceeecccCCCCC--HHHHHhhcCC----CCHHHH-----HHHHHHHHHhCC---C--CEEEEEEE----
Q 007001 291 VLR--HP--CVYSFLHVPVQSGS--DAVLSAMNRE----YTLSDF-----RTVVDTLIELVP---G--MQIATDII---- 346 (622)
Q Consensus 291 l~~--~~--~v~~~l~IGlQSgs--d~vLk~MnR~----~t~e~~-----~~~I~~lr~~~p---g--i~i~td~I---- 346 (622)
++. .+ ...+.+++|+++.+ .+-++.+++. ++.+++ ...++.+.+.+. . +.+..|.+
T Consensus 174 l~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~i~~~~~vyvS~DiDvlDps~ 253 (320)
T PRK01722 174 LLEYCDAQIRGFHYACIGVSRASNTQALWEEAKELGVTVVTDLDVRERGLKDILTELQEFIDQVDYIYLTIDLDVLPAAE 253 (320)
T ss_pred HhhhhhccCCCCCEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcChhh
Confidence 222 11 12468899999964 3444444332 344444 234444443322 2 45555666
Q ss_pred ---EcCC---CCCHHHHHHHHHHHHh-cCCCeEEEEEeeeCCC
Q 007001 347 ---CGFP---GETDEDFNQTVNLIKE-YKFPQVHISQFYPRPG 382 (622)
Q Consensus 347 ---vGfP---GETeedf~eTl~fl~e-l~~d~v~i~~ysP~PG 382 (622)
+|.| |=|..++.+.++.+.+ .++-.+.+.-+.|...
T Consensus 254 aPgtgtp~pgGls~~e~~~il~~l~~~~~vvg~DivE~~P~~D 296 (320)
T PRK01722 254 APGVSAPAAGGVPLETLLRAIEPICRSGKLQAADLVEYNPTFD 296 (320)
T ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHhcCCEEEEEEEEECCCCC
Confidence 5655 5678888888888744 3566777888888644
No 337
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=23.80 E-value=4.6e+02 Score=22.38 Aligned_cols=59 Identities=8% Similarity=0.232 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 323 SDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 323 e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
+.+.+..+.+++..|+..+..-++-+ +.-++.+.++.+.+.+.+.+.+.||.-.+|.-.
T Consensus 16 ~~~~~l~~~l~~~~~~~~v~~afle~----~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~ 74 (101)
T cd03416 16 EALEALAERLRERLPGDEVELAFLEL----AEPSLAEALDELAAQGATRIVVVPLFLLAGGHV 74 (101)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEEEc----CCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccc
Confidence 46777788888877666666666643 234677788888888999999999999999754
No 338
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.67 E-value=2.5e+02 Score=30.18 Aligned_cols=123 Identities=17% Similarity=0.260 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCC-CCEEEEEEEEcCCCCCHH--HH-HHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHH
Q 007001 326 RTVVDTLIELVP-GMQIATDIICGFPGETDE--DF-NQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSR 401 (622)
Q Consensus 326 ~~~I~~lr~~~p-gi~i~td~IvGfPGETee--df-~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R~~ 401 (622)
++.+.++++..| .+.+ +|++.++ +. ...+++++..+- .+-.+-|.. ...+++..++ .-
T Consensus 217 LdILn~iqk~~~~~v~I-------~~~Df~di~eVD~KLvklAk~~~g-~lvTND~NL---nKVae~qgV~-------vL 278 (356)
T COG4956 217 LDILNEIQKEDPIQVEI-------YEGDFEDIPEVDSKLVKLAKVTGG-KLVTNDFNL---NKVAELQGVQ-------VL 278 (356)
T ss_pred hHHHHHHHhhCCCcEEE-------ccCCccchhhHHHHHHHHHHHhCC-EEEeccCcH---HHHHhhcCCc-------ee
Confidence 446777777744 2333 4665544 33 245666777653 222222211 1111121122 01
Q ss_pred HHHHHHHHhhhhccCCCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEee
Q 007001 402 ELTSVFEAFTPYLGMEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGR 467 (622)
Q Consensus 402 ~L~~l~~~~~~~~~~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~ 467 (622)
-+.+++.+.+. .-..|..+.|.+-.-.++.++-+|+-+.-..|+++....+.|+.++|.+|++-.
T Consensus 279 NINDLAnAVkP-~vlpGe~l~v~iiK~GkE~~QGVgYLdDGTMiVVE~gr~~ig~~~~V~VtsvLQ 343 (356)
T COG4956 279 NINDLANAVKP-VVLPGEELTVQIIKDGKEPGQGVGYLDDGTMIVVEEGRKLIGKTVQVEVTSVLQ 343 (356)
T ss_pred cHHHHHHHhCC-cccCCCeeEEEEeecCcccCCceEEecCCeEEEEecchhhCCCeeEEEEeehhh
Confidence 13445444332 246799999988765444446788888888899987777899999999998643
No 339
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=23.29 E-value=2.7e+02 Score=28.73 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=47.8
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
+.++|+..--|||+. | ...|+.+.+-.+.|++.|.-||.|.| +-..|. .....++|+.+.+.+
T Consensus 149 ~vRGYVScvvGCPye----------G---~v~P~kVa~V~k~ly~mGCyEiSLGD--TIGvGT--pgtm~~ML~~Vmk~v 211 (316)
T KOG2368|consen 149 RVRGYVSCVVGCPYE----------G---AVQPSKVAEVVKKLYEMGCYEISLGD--TIGVGT--PGTMKRMLDAVMKVV 211 (316)
T ss_pred ccceEEEEEecCCcc----------C---CcCHHHHHHHHHHHHhCCcEEEeccc--ccccCC--chhHHHHHHHHHHhC
Confidence 456899999999864 2 45788888889999999999999853 322232 245788888888777
Q ss_pred C
Q 007001 264 P 264 (622)
Q Consensus 264 ~ 264 (622)
|
T Consensus 212 P 212 (316)
T KOG2368|consen 212 P 212 (316)
T ss_pred C
Confidence 6
No 340
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.93 E-value=9.8e+02 Score=25.84 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHh
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 293 (622)
.++++..++++...+.|++.|.+-....... ..-.+.++.+.+.++ ....+++. .|-..-.+...++.+.+.
T Consensus 142 ~~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~-----~~di~~i~~vR~~~G--~~~~l~vD-an~~~~~~~A~~~~~~l~ 213 (368)
T cd03329 142 ESPEAYADFAEECKALGYRAIKLHPWGPGVV-----RRDLKACLAVREAVG--PDMRLMHD-GAHWYSRADALRLGRALE 213 (368)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCchhH-----HHHHHHHHHHHHHhC--CCCeEEEE-CCCCcCHHHHHHHHHHhh
Confidence 4788999999999999999988752100001 123577788877664 45566665 232211122222333332
Q ss_pred CCCCceeecccCCCCCHHHHHhhcC
Q 007001 294 HPCVYSFLHVPVQSGSDAVLSAMNR 318 (622)
Q Consensus 294 ~~~v~~~l~IGlQSgsd~vLk~MnR 318 (622)
.-+ ..++.=|+...+-..+..+++
T Consensus 214 ~~~-l~~iEeP~~~~d~~~~~~l~~ 237 (368)
T cd03329 214 ELG-FFWYEDPLREASISSYRWLAE 237 (368)
T ss_pred hcC-CCeEeCCCCchhHHHHHHHHh
Confidence 222 346666665555455555443
No 341
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.88 E-value=3e+02 Score=25.85 Aligned_cols=60 Identities=12% Similarity=0.329 Sum_probs=37.4
Q ss_pred EEEEEecccccchhHH------HHHHHHHHhcCCeeeCCCCCCcEEEEec---------------hHHHHHHHHHHhc--
Q 007001 60 TIYMKTFGCSHNQSDS------EYMAGQLSAFGYALTDNSEEADIWLINT---------------QSAMDTLIAKCKS-- 116 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Ds------e~m~~~L~~~G~~~v~~~~~ADlviINT---------------~~~~~~ii~~~k~-- 116 (622)
.+.+.++||.=+.... +.+...|. ...+|+|+|.- .+.+..+++++++
T Consensus 24 ~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~---------~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~ 94 (189)
T cd01825 24 GVIYDNLGVNGASASLLLKWDAEFLQAQLA---------ALPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQIL 94 (189)
T ss_pred ceEEecCccCchhhhhhhccCHHHHHHHHh---------hCCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5677888887766432 11111221 23579999865 3455677888877
Q ss_pred CCCcEEEEcccc
Q 007001 117 AKKPLVVAGCVP 128 (622)
Q Consensus 117 ~~~~VVVgGC~a 128 (622)
.+.+||+.|+.+
T Consensus 95 ~~~~iv~~~~~~ 106 (189)
T cd01825 95 PNASILLVGPPD 106 (189)
T ss_pred CCCeEEEEcCCc
Confidence 467888888654
No 342
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=22.88 E-value=7.7e+02 Score=26.11 Aligned_cols=127 Identities=14% Similarity=0.207 Sum_probs=77.2
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
.+-.+.+.+++|+++....|.+.++|. .++|..... ..+..+.+.|.+.+.. ....+.+.
T Consensus 81 ~~ekS~~~l~~e~~r~~~lG~~~lv~H---pG~~~~~~~e~~l~~i~~~Ln~~~~~-~~v~i~~e--------------- 141 (280)
T COG0648 81 KVEKSIERLIDEIDRCEQLGAKLLVFH---PGSYLGQGKEEGLNRIAEALNELLEE-EGVIILLE--------------- 141 (280)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEC---CccccCCCHHHHHHHHHHHHHHHhhc-cCCeEEEE---------------
Confidence 456788999999999999999999985 566655421 1233333333222110 00111111
Q ss_pred HHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC-CEEEEEE----EEcCCCCCHHHHHHHHHHH
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG-MQIATDI----ICGFPGETDEDFNQTVNLI 364 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg-i~i~td~----IvGfPGETeedf~eTl~fl 364 (622)
.++. +-++++.+++++.+.++.+.+. . +.+..|+ =.|+.--|+++|.++++.+
T Consensus 142 ------------~~ag--------egs~~g~~F~~L~eii~~~~~~--~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~ 199 (280)
T COG0648 142 ------------NTAG--------EGSGKGTQFGELAEIIDLIEEK--ERIGVCIDTCHAFAAGYDIITEEDFEKVLNEF 199 (280)
T ss_pred ------------Eecc--------ccCccccchhhHHHHHHhhccc--CceEEEEEchhhhhccCCcCcHHHHHHHHHHH
Confidence 1111 2356778888999999998887 4 6666664 3455556668999999877
Q ss_pred H-hcCCCeEEEEEee
Q 007001 365 K-EYKFPQVHISQFY 378 (622)
Q Consensus 365 ~-el~~d~v~i~~ys 378 (622)
. .++++++....++
T Consensus 200 d~~~G~~~~~~~Hln 214 (280)
T COG0648 200 DKVLGLEYLKHIHLN 214 (280)
T ss_pred HHHhChhhheeEeec
Confidence 5 4476555555444
No 343
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=22.83 E-value=4.9e+02 Score=30.76 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=61.9
Q ss_pred ccEEEEEecccccc-hhHHHHHHHHHHhcCCeeeCCC--------------CCCcEEEEec-----hHHHHHHHHHHhcC
Q 007001 58 TETIYMKTFGCSHN-QSDSEYMAGQLSAFGYALTDNS--------------EEADIWLINT-----QSAMDTLIAKCKSA 117 (622)
Q Consensus 58 ~~~v~i~TlGC~~N-~~Dse~m~~~L~~~G~~~v~~~--------------~~ADlviINT-----~~~~~~ii~~~k~~ 117 (622)
..+|++.|+|=-.- ..=+.-..+.|..-||++++.. ..||+++|.+ .+..-.+++.+|+.
T Consensus 494 rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~~sga~i~viCssD~~Y~~~a~~~~~al~~a 573 (619)
T TIGR00642 494 RPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFKKAGAQVAVLCSSDKVYAQQGLEVAKALKAA 573 (619)
T ss_pred CCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHHhcCCCEEEEeCCCcchHHHHHHHHHHHHhC
Confidence 35899999995322 3445556677888899887543 4688999988 34445677888877
Q ss_pred CC-cEEEEccccccchhhhcccccE--EEcCCchHHHHHHHH
Q 007001 118 KK-PLVVAGCVPQGSRDLKELEGVS--IVGVQQIDRVVEVVE 156 (622)
Q Consensus 118 ~~-~VVVgGC~aq~~pe~~~~~~d~--VvG~~~~~~l~ell~ 156 (622)
++ .|++.|--+. ..+......|. .+|..-.+.|..+.+
T Consensus 574 g~~~v~lAG~p~~-~~~~~~aGvd~fi~~g~d~~~~L~~~~~ 614 (619)
T TIGR00642 574 GAKALYLAGAFKE-FGDDAAEAIDGRLFMKMNVVDTLSSTLD 614 (619)
T ss_pred CCCEEEEeCCCcc-hhhHHhcCCcceeEcCCcHHHHHHHHHH
Confidence 75 6889996544 22233334454 345555544444443
No 344
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.76 E-value=6.5e+02 Score=23.70 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCC-cee--EEEeecCCcc-hhHHHHHHHH
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDG-STM--LRIGMTNPPF-ILEHLKEIAE 290 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~-~~~--iri~~~~p~~-i~~~l~el~~ 290 (622)
+.+.+.+-++++.+.|++-|.+.+ ++++.+.+... + ... ..++...... ..+..+....
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------------~~i~~~~~~~~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~ 73 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------------GYVRLAADALA--GSDVPVIVVVGFPTGLTTTEVKVAEVEE 73 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------------HHHHHHHHHhC--CCCCeEEEEecCCCCCCcHHHHHHHHHH
Confidence 778888889999999999888775 44555544443 2 222 2333222110 2222222222
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC-CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-PGMQIATDIICGFPGETDEDFNQTVNLIKEYKF 369 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~-pgi~i~td~IvGfPGETeedf~eTl~fl~el~~ 369 (622)
..+. + +..+.+..-. .-.. ..+.+...+.++.+.+.. +++.+..+.+.+.. -+.+.+.+..+.+.+.++
T Consensus 74 a~~~-G-ad~i~v~~~~-----~~~~--~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 74 AIDL-G-ADEIDVVINI-----GSLK--EGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-KTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHc-C-CCEEEEeccH-----HHHh--CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-CCHHHHHHHHHHHHHhCC
Confidence 2222 2 3333321100 0000 002456666666666654 47777777775543 356667776677777888
Q ss_pred CeEEEE
Q 007001 370 PQVHIS 375 (622)
Q Consensus 370 d~v~i~ 375 (622)
+.+..+
T Consensus 144 ~~iK~~ 149 (201)
T cd00945 144 DFIKTS 149 (201)
T ss_pred CEEEeC
Confidence 876644
No 345
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=22.70 E-value=8.7e+02 Score=25.68 Aligned_cols=106 Identities=15% Similarity=0.291 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeec-------CCcchhHHHH
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLK 286 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~-------~p~~i~~~l~ 286 (622)
.+++++++.++..-+.|+..+++.. +.+.+ +-.-++..+.... .++++++. +|..+.+...
T Consensus 11 ~~~~~~~~~a~~AE~~Gfd~vw~~e-h~~~~------~~~~~la~~aa~T-----~rI~lgt~v~~~~~r~P~~~A~~~a 78 (325)
T PRK02271 11 HPVKKIAYLAKLAEDNGFDYAWITD-HYNNR------DVYMTLAAIAAAT-----DTIKLGPGVTNPYTRHPAITASAIA 78 (325)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc-ccCCC------CHHHHHHHHHHhc-----CeEEEEeeeccCCCCCHHHHHHHHH
Confidence 3688999999988888999998864 33221 2245566666543 35555541 3333333222
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCC--CHHHHHHHHHHHHHhC
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY--TLSDFRTVVDTLIELV 336 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~--t~e~~~~~I~~lr~~~ 336 (622)
-|. .+..+ ++.+|+=+|++..+..++..+ ..+.+.+.++.+++..
T Consensus 79 tLd-~ls~G----R~~lG~G~G~~~~~~~~G~~~~~~~~~~~E~l~ilr~l~ 125 (325)
T PRK02271 79 TLD-EISGG----RAVLGIGPGDKATLDALGIEWEKPLRTVKEAIEVIRKLW 125 (325)
T ss_pred HHH-HHcCC----CEEEEecCCCHHHHHHcCCCcccHHHHHHHHHHHHHHHh
Confidence 222 22222 567888888887788887654 3466777777777653
No 346
>PRK15452 putative protease; Provisional
Probab=22.69 E-value=1.1e+03 Score=26.59 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=16.1
Q ss_pred HHHHHHHHHCCCcEEEEeecCCC
Q 007001 220 VGRVRTVIADGVKEVWLSSEDTG 242 (622)
Q Consensus 220 v~Ei~~L~~~GvkeI~L~g~d~~ 242 (622)
++.++.+++.|+..|++.+..++
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~ 35 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYS 35 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccc
Confidence 35566677788888888765544
No 347
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=22.36 E-value=3.6e+02 Score=29.10 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=40.0
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-C-------CCHHHHHHHHHHhCC
Q 007001 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-G-------VNLPILLNAIVAELP 264 (622)
Q Consensus 204 ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-~-------~~l~eLL~~l~~~l~ 264 (622)
++...|-+ ..+++.++++++.+.+.|++.|.|+|.. .. +|. + .-+..-++.|.+.+|
T Consensus 49 I~smPg~~-r~sid~l~~~~~~~~~~Gi~~v~lFgv~--~~-Kd~~gs~A~~~~g~v~~air~iK~~~p 113 (322)
T PRK13384 49 ISTLPGIS-RLPESALADEIERLYALGIRYVMPFGIS--HH-KDAKGSDTWDDNGLLARMVRTIKAAVP 113 (322)
T ss_pred cCCCCCcc-eECHHHHHHHHHHHHHcCCCEEEEeCCC--CC-CCCCcccccCCCChHHHHHHHHHHHCC
Confidence 34444544 4689999999999999999999999852 12 221 1 235677888877765
No 348
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=22.23 E-value=7.6e+02 Score=25.30 Aligned_cols=134 Identities=10% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeec
Q 007001 223 VRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLH 302 (622)
Q Consensus 223 i~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~ 302 (622)
.+.+.++|-+|+.+-.+.+. ..+.+-+.++.+. ...-+.+.+..|..+. ++..+... .+..+.
T Consensus 35 ~~~~~~rgr~ef~~~~e~~~-------~~i~~e~~~~~~~----~~vivnv~~~~~ee~~----~~a~~v~~--~~d~Id 97 (231)
T TIGR00736 35 SRDIEKRGRKEFSFNLEEFN-------SYIIEQIKKAESR----ALVSVNVRFVDLEEAY----DVLLTIAE--HADIIE 97 (231)
T ss_pred HHHHHHcCCcccCcCcccHH-------HHHHHHHHHHhhc----CCEEEEEecCCHHHHH----HHHHHHhc--CCCEEE
Confidence 45677789888643211100 1123333333211 2234444444554332 23333322 256677
Q ss_pred ccCCCCCHHHHHhhcC---CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee
Q 007001 303 VPVQSGSDAVLSAMNR---EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY 378 (622)
Q Consensus 303 IGlQSgsd~vLk~MnR---~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ys 378 (622)
|.+=...+++.+.=.- ..+.+.+.+.++.+++. ++.+..=+=.|+ +.++..+..+.+.+.+.+.+++....
T Consensus 98 iN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~---~~~~~~~~a~~l~~aGad~i~Vd~~~ 171 (231)
T TIGR00736 98 INAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC---IPLDELIDALNLVDDGFDGIHVDAMY 171 (231)
T ss_pred EECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC---CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence 7665555554421100 12677888888888866 665544444444 44556677778899999999997544
No 349
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=22.22 E-value=1.7e+02 Score=28.28 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=35.1
Q ss_pred EecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec---h----HHHHHHHHHHhcCCCcEEE
Q 007001 64 KTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---Q----SAMDTLIAKCKSAKKPLVV 123 (622)
Q Consensus 64 ~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT---~----~~~~~ii~~~k~~~~~VVV 123 (622)
-+-||+++..--+.-...++.. -.+.+||+|||= . ..++..+..+-..+.+|++
T Consensus 68 gs~gCrLD~~~La~A~~~l~~a------l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt 128 (159)
T PF10649_consen 68 GSRGCRLDPGALAEASAALRRA------LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLT 128 (159)
T ss_pred CCcccccCHHHHHHHHHHHHHH------HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEE
Confidence 3678999877666555555543 234699999998 2 2345556556667877665
No 350
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=22.16 E-value=3.8e+02 Score=28.82 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=39.4
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-C-------CCHHHHHHHHHHhCC
Q 007001 205 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-G-------VNLPILLNAIVAELP 264 (622)
Q Consensus 205 p~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-~-------~~l~eLL~~l~~~l~ 264 (622)
+.+.|-+| .+++.++++++.+.+.|++.|.|+|.. .. +|. + .-+..-++.|.+.+|
T Consensus 40 ~sMPG~~r-~s~d~l~~~~~~~~~~Gi~~v~LFgv~--~~-Kd~~gs~A~~~~g~v~~air~iK~~~p 103 (314)
T cd00384 40 SSMPGVYR-LSVDSLVEEAEELADLGIRAVILFGIP--EH-KDEIGSEAYDPDGIVQRAIRAIKEAVP 103 (314)
T ss_pred CCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEECCC--CC-CCCCcccccCCCChHHHHHHHHHHhCC
Confidence 34445444 689999999999999999999999862 11 221 1 125677788877665
No 351
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=22.14 E-value=4.2e+02 Score=26.40 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=37.2
Q ss_pred eeecccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHH----HHHHHHHHHhc
Q 007001 299 SFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDED----FNQTVNLIKEY 367 (622)
Q Consensus 299 ~~l~IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeed----f~eTl~fl~el 367 (622)
..+||-+.+|.. |+| |.+.+++.+.++.+... |++.+..-+..+--.++.+. ++..++++.++
T Consensus 117 ~~v~lkvdtG~~-----~~R~G~~~~~~~~~~~~i~~~-~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l 184 (222)
T cd00635 117 LDVLVQVNIGGE-----ESKSGVAPEELEELLEEIAAL-PNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDEL 184 (222)
T ss_pred CcEEEEEecCCC-----CCCCCCCHHHHHHHHHHHHcC-CCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHH
Confidence 357777887722 577 57888888888887653 67765543333333344444 44444444444
No 352
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=22.12 E-value=2.5e+02 Score=25.27 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=4.2
Q ss_pred CcEEEEec
Q 007001 96 ADIWLINT 103 (622)
Q Consensus 96 ADlviINT 103 (622)
+|+|-+.|
T Consensus 66 ~d~IHlss 73 (107)
T PF08821_consen 66 ADVIHLSS 73 (107)
T ss_pred CCEEEEcC
Confidence 44555555
No 353
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.94 E-value=67 Score=32.87 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=44.9
Q ss_pred CccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec---------------hHHHHHHHHHHhcCCCcE
Q 007001 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT---------------QSAMDTLIAKCKSAKKPL 121 (622)
Q Consensus 57 ~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT---------------~~~~~~ii~~~k~~~~~V 121 (622)
|.+++.+.-- .-+-.+......|.+.|++++- |++.|--.||- .+.+.+++++++++|...
T Consensus 116 g~kkvgLLgT---~~Tm~~~fY~~~l~~~gievvv-Pdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~ 191 (230)
T COG1794 116 GAKKVGLLGT---RFTMEQGFYRKRLEEKGIEVVV-PDDDEQAEVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEG 191 (230)
T ss_pred CCceeEEeec---cchHHhHHHHHHHHHCCceEec-CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCE
Confidence 4566665421 1245667888999999988654 23334433433 445567888999899999
Q ss_pred EEEccc
Q 007001 122 VVAGCV 127 (622)
Q Consensus 122 VVgGC~ 127 (622)
|+-||-
T Consensus 192 vIlGCT 197 (230)
T COG1794 192 VILGCT 197 (230)
T ss_pred EEEecc
Confidence 999994
No 354
>PRK00957 methionine synthase; Provisional
Probab=21.88 E-value=8.6e+02 Score=25.48 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=37.9
Q ss_pred CCEEEEEEEEcCC--CCCHHHHHHHHHHHHh-cCCCeEEEEEeeeCCCCccccCCCCCHHHHHHHHHHHHHHHHH
Q 007001 338 GMQIATDIICGFP--GETDEDFNQTVNLIKE-YKFPQVHISQFYPRPGTPAARMKKVPSAVVKKRSRELTSVFEA 409 (622)
Q Consensus 338 gi~i~td~IvGfP--GETeedf~eTl~fl~e-l~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R~~~L~~l~~~ 409 (622)
+-.+...+|=+-. -|+.+++.+.++-+.+ ++.+.+.+. |+..+ ..++.+...+-++.+.+..+.
T Consensus 237 ~k~l~~GvId~~~~~~e~~e~v~~~i~~~~~~~~~~~l~ls-----p~CGl---~~~~~~~~~~kL~~l~~aa~~ 303 (305)
T PRK00957 237 GKKIGFGCVDTKSKSVESVDEIKALIEEGIEILGAENILID-----PDCGM---RMLPRDVAFEKLKNMVEAARE 303 (305)
T ss_pred CCEEEEEEEcCCCCCCCCHHHHHHHHHHHHHhcCHHHEEEC-----CCcCC---CcCCHHHHHHHHHHHHHHHHH
Confidence 5456666665532 3788888877775554 444444443 33333 235566777777777777664
No 355
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=21.80 E-value=3.5e+02 Score=29.18 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=38.8
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-C-------CCHHHHHHHHHHhCC
Q 007001 206 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-G-------VNLPILLNAIVAELP 264 (622)
Q Consensus 206 ~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-~-------~~l~eLL~~l~~~l~ 264 (622)
...|-+ .++++.++++++.+.+.|++.|.|+|. ... +|. + .-+..-++.|.+.+|
T Consensus 49 smPg~~-r~s~d~l~~~v~~~~~~Gi~av~LFgv--~~~-Kd~~gs~A~~~~g~v~rair~iK~~~p 111 (323)
T PRK09283 49 SMPGVY-RLSIDLLVKEAEEAVELGIPAVALFGV--PEL-KDEDGSEAYNPDGLVQRAIRAIKKAFP 111 (323)
T ss_pred CCCCce-eeCHHHHHHHHHHHHHCCCCEEEEeCc--CCC-CCcccccccCCCCHHHHHHHHHHHhCC
Confidence 344444 469999999999999999999999986 222 221 1 135677788877665
No 356
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.40 E-value=3.1e+02 Score=29.24 Aligned_cols=63 Identities=6% Similarity=0.043 Sum_probs=37.0
Q ss_pred CccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-hHHHHHHHHHHhcCCCcEEEEc
Q 007001 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-QSAMDTLIAKCKSAKKPLVVAG 125 (622)
Q Consensus 57 ~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-~~~~~~ii~~~k~~~~~VVVgG 125 (622)
+.++++++.---..-+.=.+.+...|++.|++++.... +.. ...+...+.+++..++.+|+..
T Consensus 139 ~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~------~~~~~~D~~~~v~~i~~~~pd~V~~~ 202 (351)
T cd06334 139 KGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPV------PPPGPNDQKAQWLQIRRSGPDYVILW 202 (351)
T ss_pred CCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeecc------CCCCcccHHHHHHHHHHcCCCEEEEe
Confidence 35778887655444444556677788888888764311 111 2344556666777777655433
No 357
>TIGR03842 F420_CPS_4043 F420-dependent oxidoreductase, CPS_4043 family. This model represents a family of putative F420-dependent oxidoreductases, fairly closely related to 5,10-methylenetetrahydromethanopterin reductase (mer, TIGR03555), both within the bacterial luciferase-like monoxygenase (LLM) family. A fairly deep split (to about 40 % sequence identity) in the present family separates a strictly Actinobacterial clade from an alpha/beta/gamma-proteobacterial clade, in which the member is often the only apparent F420-dependent LLM family member. The specific function, and whether Actinobacterial and Proteobacterial clades differ in function, are unknown.
Probab=21.37 E-value=9.2e+02 Score=25.58 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEee--cC-----CcchhHHHH
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGM--TN-----PPFILEHLK 286 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~--~~-----p~~i~~~l~ 286 (622)
.+++++++.++..-+.|+..+++.+.. +.+ . +-.-++..+.... .++++++ ++ |..+.+...
T Consensus 10 ~~~~~~~~~a~~AE~~Gfd~~w~~e~~-~~~-~----~p~~~laa~A~~T-----~rI~lgt~v~~~~~r~P~~lA~~~a 78 (330)
T TIGR03842 10 PPASRVVELARQAERHGFDYVWTFDSH-ILW-Q----EPFVIYSQILAAT-----RNMVVGPMVTNPLTRDWTVTASLFA 78 (330)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEecCcC-ccc-c----CHHHHHHHHHHhC-----CeeEEEeeecCCCCCCHHHHHHHHH
Confidence 378999999998888899999986432 222 1 2344666666543 3666653 22 222332221
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhC
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELV 336 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~ 336 (622)
-|. .+..+ ++.+|+-+|... ...++.. ...+.+.+.++.+++.+
T Consensus 79 tLD-~lS~G----R~~lG~G~G~~~-~~~~g~~~~~~~~~~E~l~ilr~l~ 123 (330)
T TIGR03842 79 TLN-EMFGN----RTVCGIGRGDSA-VRVLGGKPATLARLREAMHVIKELA 123 (330)
T ss_pred HHH-HHcCC----ceEEeecCCcHH-HHHhCCCCchHHHHHHHHHHHHHHh
Confidence 122 22222 567788777643 3444432 23566777777777763
No 358
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=21.30 E-value=2e+02 Score=31.01 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=37.4
Q ss_pred ccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-------CCCHHHHHHHHHHhCC
Q 007001 206 HARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-------GVNLPILLNAIVAELP 264 (622)
Q Consensus 206 ~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-------~~~l~eLL~~l~~~l~ 264 (622)
.+.|-+ ..+++.++++++.+.+.|++.|.|+|.-........ ..-+...++.|.+.+|
T Consensus 47 smPg~~-r~sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK~~~p 111 (324)
T PF00490_consen 47 SMPGVY-RYSIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIKKAFP 111 (324)
T ss_dssp TSTTEE-EEEHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHHHHST
T ss_pred CCCCee-eeCHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHHHhCC
Confidence 333444 458999999999999999999999885111111111 1235778888888776
No 359
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=20.83 E-value=3.4e+02 Score=31.44 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=55.0
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEechHHHHHHHHHHhcCCCcEEEEccccccchhhhcc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKEL 137 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~~~ 137 (622)
..+|.|++|....+. .+.+...| |+. -+.+.+.+.+.++..++++|+.|..+||||-++........+
T Consensus 107 ~~~iavv~~~~~~~~--~~~~~~~l---~~~-------i~~~~~~~~~e~~~~v~~lk~~G~~~vvG~~~~~~~A~~~g~ 174 (538)
T PRK15424 107 TSSIGVVTYQETIPA--LVAFQKTF---NLR-------IEQRSYVTEEDARGQINELKANGIEAVVGAGLITDLAEEAGM 174 (538)
T ss_pred CCcEEEEecCcccHH--HHHHHHHh---CCc-------eEEEEecCHHHHHHHHHHHHHCCCCEEEcCchHHHHHHHhCC
Confidence 357899998776643 33455555 332 244555667778888999999999999999666544433333
Q ss_pred cccEEEcCCchHHHHHHHHHHh
Q 007001 138 EGVSIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 138 ~~d~VvG~~~~~~l~ell~~~~ 159 (622)
.+..+. . .+.+...++++.
T Consensus 175 ~g~~~~--s-~e~i~~a~~~A~ 193 (538)
T PRK15424 175 TGIFIY--S-AATVRQAFEDAL 193 (538)
T ss_pred ceEEec--C-HHHHHHHHHHHH
Confidence 444333 2 256777776654
No 360
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.83 E-value=6.9e+02 Score=26.60 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=60.5
Q ss_pred hhcCC----CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEE------eeeCCCCc
Q 007001 315 AMNRE----YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQ------FYPRPGTP 384 (622)
Q Consensus 315 ~MnR~----~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~------ysP~PGTp 384 (622)
.++.+ .|.+++...++.|.+. -++.+..|+=-|| |+ .....+|+..+.+.+..-+|+=- ..-++|.+
T Consensus 52 slG~pD~~~~t~~e~~~~vrrI~~a-~~lPv~vD~dtGf-G~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~ 128 (289)
T COG2513 52 SLGLPDLGITTLDEVLADARRITDA-VDLPVLVDIDTGF-GE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKE 128 (289)
T ss_pred hcCCCccccccHHHHHHHHHHHHhh-cCCceEEeccCCC-Cc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCC
Confidence 55554 4688999999999887 3788999999999 77 99999999999999998777732 23347777
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 007001 385 AARMKKVPSAVVKKRSRELT 404 (622)
Q Consensus 385 a~~~~~v~~~~~k~R~~~L~ 404 (622)
+. +.++.-.|.+-..
T Consensus 129 l~-----~~~e~v~rIkAa~ 143 (289)
T COG2513 129 LV-----SIDEMVDRIKAAV 143 (289)
T ss_pred cC-----CHHHHHHHHHHHH
Confidence 64 4445545544333
No 361
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=20.74 E-value=3.9e+02 Score=28.79 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=39.5
Q ss_pred CccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC----CCC---cCCCHHHHHHHHHHhCC
Q 007001 205 KHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY----GRD---IGVNLPILLNAIVAELP 264 (622)
Q Consensus 205 p~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~y----g~d---~~~~l~eLL~~l~~~l~ 264 (622)
+.+.|-+ ..+++.+++|++.+.+.|++.+.|+|...... |.+ ...-+..-++.+.+.+|
T Consensus 43 ~smPg~~-r~s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p 108 (320)
T cd04823 43 PSMPGVF-RLSIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFP 108 (320)
T ss_pred CCCCCce-eeCHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCC
Confidence 3444544 46899999999999999999999998621111 111 01235677788877665
No 362
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=20.64 E-value=9.3e+02 Score=25.30 Aligned_cols=109 Identities=9% Similarity=0.002 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeec-------CCcchhHHHHH
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMT-------NPPFILEHLKE 287 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~-------~p~~i~~~l~e 287 (622)
..+++++.++..-+.|+..+++....+..|+. ..+-.-++..+.... .+|++++. +|..+.+...-
T Consensus 20 ~~~~~~~~a~~Ae~lGfd~~w~~Ehh~~~~~~--~~~p~~~la~lA~~T-----~rI~lgt~v~~~~~~~P~~~Ae~~at 92 (315)
T cd01096 20 VLDRMVDTGVLVDKLNFDTALVLEHHFSENGI--VGAPLTAAAFLLGLT-----ERLNVGSLNQVITTHHPVRIAEEALL 92 (315)
T ss_pred HHHHHHHHHHHHHHcCCCEEEecccccCCCCC--CCCHHHHHHHHHHhc-----CEeEeeeeeeccCccCHHHHHHHHHH
Confidence 34566666666666799999987655555532 123345666666543 35666532 34444433322
Q ss_pred HHHHHhCCCCceeecccCCCCCH-HHHHhhcCCC--CHHHHHHHHHHHHHh
Q 007001 288 IAEVLRHPCVYSFLHVPVQSGSD-AVLSAMNREY--TLSDFRTVVDTLIEL 335 (622)
Q Consensus 288 l~~l~~~~~v~~~l~IGlQSgsd-~vLk~MnR~~--t~e~~~~~I~~lr~~ 335 (622)
|. .+..+ ++.+|+=+|.. .....++... ..+.+.+.++.+++.
T Consensus 93 LD-~lS~G----R~~lGvg~G~~~~e~~~~G~~~~~~~~~~~E~l~~l~~l 138 (315)
T cd01096 93 LD-QMSKG----RFILGFSDCLYDKDMRFFGRPMESQRQLFEACYEIINDA 138 (315)
T ss_pred HH-HHcCC----CeEEEeeCCCCHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 22 22222 56677766654 3566676654 334466666666665
No 363
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=20.58 E-value=3e+02 Score=24.26 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCC
Q 007001 322 LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383 (622)
Q Consensus 322 ~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGT 383 (622)
.+.+.+..+.+++..++..+.+-|+-. +.-++.+.++.+.+.+.+.+.+.||.-.+|-
T Consensus 16 ~~~~~~l~~~l~~~~~~~~v~~afle~----~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~ 73 (117)
T cd03414 16 NADVAKIARLLEEGTGFARVETAFAAA----TRPSLPEALERLRALGARRVVVLPYLLFTGV 73 (117)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEecC----CCCCHHHHHHHHHHcCCCEEEEEechhcCCc
Confidence 456777888887776656666666642 2336888888888889999999999999985
No 364
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.53 E-value=1.2e+03 Score=25.76 Aligned_cols=140 Identities=24% Similarity=0.324 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC--------------CCcCCCHHHHHHHHHHhCCCCCceeEEEeecCC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG--------------RDIGVNLPILLNAIVAELPPDGSTMLRIGMTNP 278 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg--------------~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p 278 (622)
..+.+.-++++++|.+.|..-+.+.-.|.-.-. .|...+..-.|+.+.. +...+|+ ||
T Consensus 38 T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~-----G~~~iRI---NP 109 (360)
T PRK00366 38 TADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEA-----GADALRI---NP 109 (360)
T ss_pred chhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHh-----CCCEEEE---CC
Confidence 578899999999999999887777643221100 0111122222333221 3345564 56
Q ss_pred cch---hHHHHHHHHHHhCCCCceeecccCCCCC--HHHHHhhcCCC---CHHHHHHHHHHHHHhCCCCEEEEEEEEcCC
Q 007001 279 PFI---LEHLKEIAEVLRHPCVYSFLHVPVQSGS--DAVLSAMNREY---TLSDFRTVVDTLIELVPGMQIATDIICGFP 350 (622)
Q Consensus 279 ~~i---~~~l~el~~l~~~~~v~~~l~IGlQSgs--d~vLk~MnR~~---t~e~~~~~I~~lr~~~pgi~i~td~IvGfP 350 (622)
-.+ .+.+.++.+.++..++ -+-||+-||| .++|++.+... -.+..++-++.+.+. |+ .||++-+-
T Consensus 110 GNig~~~~~v~~vv~~ak~~~i--pIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~--~f---~~iviS~K 182 (360)
T PRK00366 110 GNIGKRDERVREVVEAAKDYGI--PIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEEL--GF---DDIKISVK 182 (360)
T ss_pred CCCCchHHHHHHHHHHHHHCCC--CEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHC--CC---CcEEEEEE
Confidence 555 4466667777766654 4567777665 56666653221 134556666677776 65 47777776
Q ss_pred CCCHHHHHHHHHHHHhc
Q 007001 351 GETDEDFNQTVNLIKEY 367 (622)
Q Consensus 351 GETeedf~eTl~fl~el 367 (622)
.-+.....+..+++.+.
T Consensus 183 sS~v~~~i~ayrlla~~ 199 (360)
T PRK00366 183 ASDVQDLIAAYRLLAKR 199 (360)
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666666544
No 365
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.27 E-value=9.6e+02 Score=24.75 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=14.7
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHh
Q 007001 313 LSAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 313 Lk~MnR~~t~e~~~~~I~~lr~~ 335 (622)
.+++..|.+.+++.+.++.+|+.
T Consensus 62 ~~al~~G~~~~~~~~~v~~ir~~ 84 (256)
T TIGR00262 62 LRALRAGMTPEKCFELLKKVRQK 84 (256)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhc
Confidence 34455666777777777777654
No 366
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.19 E-value=9.2e+02 Score=24.51 Aligned_cols=135 Identities=11% Similarity=0.176 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCC
Q 007001 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 297 (622)
Q Consensus 218 ~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 297 (622)
+.++.++.+.+.|+++++++|-|-. .+.. .+ .++++++.+... . .+.++-- -. .++++..++..+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~--~n-~~~i~~i~~~~~--~--~v~vGGG-Ir----s~e~~~~~l~~G-- 95 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVG--NN-EMYIKEISKIGF--D--WIQVGGG-IR----DIEKAKRLLSLD-- 95 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCc--ch-HHHHHHHHhhCC--C--CEEEeCC-cC----CHHHHHHHHHCC--
Confidence 4555666677899999999987643 3432 23 488888876321 1 3333311 01 112234444433
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC-C-CCEEEEEEE----EcCCC--CCHHHHHHHHHHHHhcCC
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV-P-GMQIATDII----CGFPG--ETDEDFNQTVNLIKEYKF 369 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~-p-gi~i~td~I----vGfPG--ETeedf~eTl~fl~el~~ 369 (622)
+.++.+|-....+ .+ .++.+.+.+ + .+.++.|+- +...| +|.-++.+.++.++++++
T Consensus 96 a~kvvigt~a~~~-----------p~----~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~ 160 (232)
T PRK13586 96 VNALVFSTIVFTN-----------FN----LFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELEL 160 (232)
T ss_pred CCEEEECchhhCC-----------HH----HHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCC
Confidence 5677777666432 12 223333333 1 356666761 11112 344567788888888887
Q ss_pred CeEEEEEeeeCCCC
Q 007001 370 PQVHISQFYPRPGT 383 (622)
Q Consensus 370 d~v~i~~ysP~PGT 383 (622)
..+ ++.-.-+.||
T Consensus 161 ~~i-i~tdI~~dGt 173 (232)
T PRK13586 161 LGI-IFTYISNEGT 173 (232)
T ss_pred CEE-EEeccccccc
Confidence 654 3333446676
No 367
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=20.03 E-value=1.2e+02 Score=26.22 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=10.9
Q ss_pred EEEeeeCCCCccccCCCCCHHHHH
Q 007001 374 ISQFYPRPGTPAARMKKVPSAVVK 397 (622)
Q Consensus 374 i~~ysP~PGTpa~~~~~v~~~~~k 397 (622)
++.|.|.+|||+.+.+.+++++..
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~l 25 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFL 25 (93)
T ss_dssp EEE----TTSTTTTS----HHHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHH
Confidence 344999999999777677765443
Done!