Query 007001
Match_columns 622
No_of_seqs 510 out of 2528
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgq_A Protein TM_1862; alpha- 100.0 2.7E-50 9.3E-55 421.3 32.9 285 184-476 3-297 (304)
2 1olt_A Oxygen-independent copr 99.9 7.3E-24 2.5E-28 233.2 18.2 193 184-387 52-252 (457)
3 3t7v_A Methylornithine synthas 99.9 5.6E-22 1.9E-26 210.4 19.6 193 186-393 62-255 (350)
4 3iix_A Biotin synthetase, puta 99.9 4.1E-21 1.4E-25 202.9 22.2 193 186-395 54-248 (348)
5 1r30_A Biotin synthase; SAM ra 99.8 1.5E-19 5.2E-24 193.2 23.6 194 185-396 65-266 (369)
6 1tv8_A MOAA, molybdenum cofact 99.7 3.3E-15 1.1E-19 157.4 25.3 194 185-396 14-216 (340)
7 3c8f_A Pyruvate formate-lyase 99.6 1.3E-13 4.6E-18 136.6 19.6 177 188-384 22-208 (245)
8 2yx0_A Radical SAM enzyme; pre 99.5 2.2E-13 7.6E-18 143.7 20.5 178 189-384 74-281 (342)
9 2z2u_A UPF0026 protein MJ0257; 99.3 1.1E-11 3.6E-16 128.8 14.5 176 185-385 51-260 (311)
10 2a5h_A L-lysine 2,3-aminomutas 99.2 3.7E-10 1.3E-14 122.7 20.8 182 183-387 113-302 (416)
11 3rfa_A Ribosomal RNA large sub 99.1 2.4E-09 8.2E-14 115.6 16.7 184 184-385 114-319 (404)
12 4fhd_A Spore photoproduct lyas 97.6 0.00024 8.2E-09 75.6 11.5 164 188-366 110-282 (368)
13 3can_A Pyruvate-formate lyase- 97.1 0.0077 2.6E-07 56.8 14.1 132 232-384 5-141 (182)
14 2yxb_A Coenzyme B12-dependent 95.9 0.061 2.1E-06 50.3 11.6 101 59-159 19-143 (161)
15 1ccw_A Protein (glutamate muta 91.7 0.55 1.9E-05 42.5 8.3 88 60-147 5-121 (137)
16 1ydn_A Hydroxymethylglutaryl-C 91.3 2.6 8.9E-05 42.8 13.8 147 212-375 21-175 (295)
17 2cw6_A Hydroxymethylglutaryl-C 91.1 4.6 0.00016 41.1 15.5 145 212-375 22-176 (298)
18 1req_A Methylmalonyl-COA mutas 90.6 0.9 3.1E-05 52.2 10.4 89 59-147 597-708 (727)
19 2xij_A Methylmalonyl-COA mutas 90.4 1.3 4.5E-05 51.0 11.5 99 59-157 605-727 (762)
20 2ftp_A Hydroxymethylglutaryl-C 87.6 12 0.00041 38.1 15.5 145 212-375 25-179 (302)
21 1yez_A MM1357; MAR30, autostru 85.0 3.1 0.00011 32.8 7.4 56 416-475 12-67 (68)
22 2i2x_B MTAC, methyltransferase 84.4 6.6 0.00023 39.1 11.4 99 58-160 123-243 (258)
23 1y80_A Predicted cobalamin bin 83.6 3.5 0.00012 39.6 8.6 82 59-142 89-194 (210)
24 1yvc_A MRR5; structure, autost 83.5 4.1 0.00014 32.4 7.5 56 416-475 14-69 (70)
25 1req_B Methylmalonyl-COA mutas 83.0 2 6.8E-05 48.6 7.5 95 59-157 510-628 (637)
26 1ydo_A HMG-COA lyase; TIM-barr 82.8 14 0.00048 37.8 13.3 146 211-375 22-177 (307)
27 3ewb_X 2-isopropylmalate synth 80.5 15 0.00052 37.3 12.5 146 211-374 21-169 (293)
28 1nvm_A HOA, 4-hydroxy-2-oxoval 79.9 14 0.00049 38.2 12.4 139 212-374 25-168 (345)
29 1uwv_A 23S rRNA (uracil-5-)-me 73.6 15 0.00051 39.2 10.6 60 419-482 15-74 (433)
30 1xrs_B D-lysine 5,6-aminomutas 72.0 6.9 0.00024 39.4 7.0 64 82-147 152-243 (262)
31 3ble_A Citramalate synthase fr 70.2 36 0.0012 35.1 12.3 144 212-375 36-189 (337)
32 2yci_X 5-methyltetrahydrofolat 69.8 18 0.00062 36.4 9.6 141 212-368 29-193 (271)
33 1aj0_A DHPS, dihydropteroate s 68.9 29 0.00098 35.2 10.9 140 211-367 32-207 (282)
34 3ezx_A MMCP 1, monomethylamine 68.9 6.8 0.00023 38.0 6.0 71 59-129 93-188 (215)
35 3rmj_A 2-isopropylmalate synth 68.8 30 0.001 36.4 11.3 146 211-374 28-176 (370)
36 3kp1_A D-ornithine aminomutase 68.8 9.1 0.00031 43.2 7.5 67 79-147 627-720 (763)
37 2jjq_A Uncharacterized RNA met 65.9 7.4 0.00025 41.7 6.1 57 417-481 17-73 (425)
38 3ivs_A Homocitrate synthase, m 64.6 51 0.0018 35.3 12.3 142 211-374 55-199 (423)
39 3eeg_A 2-isopropylmalate synth 63.1 26 0.00089 36.1 9.4 144 212-373 23-169 (325)
40 1t2y_A Metallothionein, MT; pr 61.9 4.7 0.00016 25.9 2.1 14 509-523 2-15 (26)
41 3inp_A D-ribulose-phosphate 3- 57.6 74 0.0025 31.4 11.2 133 211-385 34-171 (246)
42 1tx2_A DHPS, dihydropteroate s 57.5 39 0.0013 34.5 9.4 139 213-367 59-226 (297)
43 3bul_A Methionine synthase; tr 57.4 27 0.00093 39.0 8.8 72 59-130 99-191 (579)
44 2ztj_A Homocitrate synthase; ( 55.8 1.4E+02 0.0048 31.2 13.8 139 212-375 20-164 (382)
45 1eye_A DHPS 1, dihydropteroate 55.3 77 0.0026 31.9 11.1 139 212-367 24-199 (280)
46 3fst_A 5,10-methylenetetrahydr 54.0 64 0.0022 32.9 10.4 125 213-360 93-223 (304)
47 3f6c_A Positive transcription 53.2 78 0.0027 26.2 9.5 92 71-162 10-121 (134)
48 2h1q_A Hypothetical protein; Z 52.8 14 0.00048 37.3 5.1 61 94-155 185-251 (270)
49 2dqw_A Dihydropteroate synthas 51.3 55 0.0019 33.3 9.3 146 212-368 47-220 (294)
50 2rdm_A Response regulator rece 50.6 82 0.0028 25.9 9.1 91 71-162 14-124 (132)
51 3eod_A Protein HNR; response r 49.7 57 0.002 27.0 8.0 100 59-162 8-127 (130)
52 3l5o_A Uncharacterized protein 49.6 17 0.00058 36.7 5.1 61 94-155 185-251 (270)
53 3kto_A Response regulator rece 49.2 57 0.0019 27.5 7.9 99 59-161 7-126 (136)
54 1f6y_A 5-methyltetrahydrofolat 49.0 91 0.0031 31.0 10.4 140 212-367 20-183 (262)
55 2vp8_A Dihydropteroate synthas 48.1 37 0.0013 35.0 7.5 140 212-367 60-239 (318)
56 2nx9_A Oxaloacetate decarboxyl 48.1 2.2E+02 0.0076 30.7 14.0 137 213-375 26-178 (464)
57 1rqb_A Transcarboxylase 5S sub 48.0 2.3E+02 0.0078 31.3 14.2 141 213-375 43-195 (539)
58 1eiw_A Hypothetical protein MT 47.2 1.4E+02 0.0047 25.8 10.5 93 63-159 8-108 (111)
59 3lte_A Response regulator; str 47.1 65 0.0022 26.6 7.9 93 70-162 14-126 (132)
60 2q5c_A NTRC family transcripti 46.7 64 0.0022 30.5 8.5 87 59-159 95-181 (196)
61 3tr9_A Dihydropteroate synthas 45.5 2.7E+02 0.0091 28.5 14.1 138 212-366 44-223 (314)
62 2y5s_A DHPS, dihydropteroate s 44.8 92 0.0031 31.6 9.8 139 212-368 41-217 (294)
63 3hdv_A Response regulator; PSI 44.6 80 0.0027 26.3 8.1 102 57-162 6-128 (136)
64 3f6p_A Transcriptional regulat 44.1 1.3E+02 0.0044 24.5 9.9 89 71-159 11-117 (120)
65 3ctl_A D-allulose-6-phosphate 39.4 2.5E+02 0.0086 27.1 11.7 133 213-385 9-143 (231)
66 3ovp_A Ribulose-phosphate 3-ep 38.9 1.2E+02 0.0041 29.3 9.3 132 212-385 12-149 (228)
67 3snk_A Response regulator CHEY 38.8 52 0.0018 27.6 6.0 100 58-161 14-133 (135)
68 3npg_A Uncharacterized DUF364 38.8 22 0.00076 35.3 3.9 61 95-156 164-231 (249)
69 1x7f_A Outer surface protein; 38.6 1.1E+02 0.0038 32.3 9.4 25 361-385 154-181 (385)
70 3hzh_A Chemotaxis response reg 38.0 80 0.0027 27.4 7.3 96 59-158 37-154 (157)
71 4dad_A Putative pilus assembly 37.9 1.4E+02 0.0048 25.1 8.8 101 58-162 20-142 (146)
72 3apt_A Methylenetetrahydrofola 37.1 56 0.0019 33.4 6.8 51 212-262 81-137 (310)
73 3jte_A Response regulator rece 36.6 98 0.0034 26.0 7.5 92 70-161 11-123 (143)
74 3rr1_A GALD, putative D-galact 36.5 2.1E+02 0.0072 30.0 11.4 100 214-318 124-226 (405)
75 4e7p_A Response regulator; DNA 35.5 1.6E+02 0.0053 25.1 8.7 104 56-163 18-142 (150)
76 3gl9_A Response regulator; bet 35.3 1.6E+02 0.0055 24.0 8.5 89 71-159 11-120 (122)
77 3lmz_A Putative sugar isomeras 35.2 2.2E+02 0.0075 27.0 10.6 66 298-375 44-109 (257)
78 3gt7_A Sensor protein; structu 34.4 1.2E+02 0.004 26.1 7.8 92 70-161 15-127 (154)
79 3i42_A Response regulator rece 34.4 1.4E+02 0.0048 24.3 8.0 90 71-160 12-121 (127)
80 1jeo_A MJ1247, hypothetical pr 34.3 98 0.0034 27.9 7.5 66 59-126 41-118 (180)
81 2pju_A Propionate catabolism o 33.7 73 0.0025 31.0 6.7 86 59-159 107-192 (225)
82 1m3s_A Hypothetical protein YC 33.6 97 0.0033 28.1 7.3 66 59-126 38-115 (186)
83 1dbw_A Transcriptional regulat 33.3 1.8E+02 0.0062 23.6 8.5 90 71-160 12-120 (126)
84 3h5i_A Response regulator/sens 32.1 2.1E+02 0.0073 23.8 9.0 89 71-159 14-122 (140)
85 2j48_A Two-component sensor ki 32.1 96 0.0033 24.5 6.3 86 71-158 10-115 (119)
86 1lgh_A LH II, B800/850, light 31.7 28 0.00096 26.7 2.5 30 586-615 7-36 (56)
87 2b4a_A BH3024; flavodoxin-like 31.4 1.9E+02 0.0065 24.0 8.4 98 58-161 15-131 (138)
88 2p0o_A Hypothetical protein DU 31.2 2.3E+02 0.008 29.7 10.4 114 253-385 20-155 (372)
89 3eqz_A Response regulator; str 30.9 2.1E+02 0.0071 23.3 8.5 92 71-162 12-126 (135)
90 3sho_A Transcriptional regulat 30.6 1.3E+02 0.0045 27.1 7.7 66 59-126 40-123 (187)
91 3vnd_A TSA, tryptophan synthas 30.2 1.6E+02 0.0056 29.2 8.8 22 314-335 71-92 (267)
92 2nly_A BH1492 protein, diverge 29.9 2.1E+02 0.0072 28.1 9.4 98 269-369 28-129 (245)
93 1tmy_A CHEY protein, TMY; chem 29.5 1.9E+02 0.0065 23.1 7.9 88 71-158 11-118 (120)
94 1srr_A SPO0F, sporulation resp 28.7 2.2E+02 0.0074 23.0 8.2 91 71-161 12-121 (124)
95 3mcm_A 2-amino-4-hydroxy-6-hyd 28.6 1.7E+02 0.0059 31.4 9.0 66 214-280 209-281 (442)
96 3hv2_A Response regulator/HD d 28.2 2.5E+02 0.0085 23.8 8.8 101 55-160 11-132 (153)
97 3grc_A Sensor protein, kinase; 27.3 1.1E+02 0.0037 25.6 6.1 99 59-161 7-127 (140)
98 1vim_A Hypothetical protein AF 27.3 1.1E+02 0.0038 28.4 6.6 65 59-125 48-124 (200)
99 3c3m_A Response regulator rece 27.1 2.5E+02 0.0086 23.3 8.5 90 71-161 12-123 (138)
100 3nhm_A Response regulator; pro 27.1 1.7E+02 0.0057 24.0 7.2 90 71-161 13-122 (133)
101 3heb_A Response regulator rece 26.9 2.1E+02 0.0073 24.1 8.1 88 71-158 13-132 (152)
102 1qkk_A DCTD, C4-dicarboxylate 26.9 1.6E+02 0.0056 25.0 7.3 90 71-160 12-120 (155)
103 3cg4_A Response regulator rece 26.6 2.7E+02 0.0092 22.9 9.3 98 58-159 7-125 (142)
104 4e38_A Keto-hydroxyglutarate-a 26.3 3.5E+02 0.012 26.3 10.2 116 211-376 40-155 (232)
105 2qgh_A Diaminopimelate decarbo 26.3 2.8E+02 0.0096 29.0 10.3 45 316-361 174-220 (425)
106 2xhz_A KDSD, YRBH, arabinose 5 26.2 1.5E+02 0.0053 26.6 7.3 65 60-126 51-132 (183)
107 3kht_A Response regulator; PSI 26.1 2.8E+02 0.0097 23.0 9.2 90 70-159 13-126 (144)
108 2xvy_A Chelatase, putative; me 25.9 1.5E+02 0.0051 28.9 7.6 58 321-383 24-93 (269)
109 2ze3_A DFA0005; organic waste 25.2 3.3E+02 0.011 27.1 10.0 82 320-408 59-140 (275)
110 3sbf_A Mandelate racemase / mu 25.0 4.1E+02 0.014 27.6 11.2 98 214-318 132-249 (401)
111 2plj_A Lysine/ornithine decarb 24.9 3.1E+02 0.011 28.6 10.4 41 300-342 167-209 (419)
112 3eul_A Possible nitrate/nitrit 24.8 1.7E+02 0.0058 24.8 7.0 102 58-163 15-137 (152)
113 2bdq_A Copper homeostasis prot 24.6 4.3E+02 0.015 25.7 10.3 143 215-387 74-219 (224)
114 2vef_A Dihydropteroate synthas 24.6 4.4E+02 0.015 26.7 11.0 63 212-279 28-96 (314)
115 2qip_A Protein of unknown func 24.2 70 0.0024 29.2 4.4 50 69-126 90-141 (165)
116 3jva_A Dipeptide epimerase; en 24.2 2.8E+02 0.0097 28.3 9.6 89 214-313 138-226 (354)
117 1vzw_A Phosphoribosyl isomeras 24.0 3.4E+02 0.012 25.6 9.7 132 218-379 33-170 (244)
118 2jba_A Phosphate regulon trans 24.0 2.8E+02 0.0096 22.2 8.4 90 71-160 11-121 (127)
119 1mvo_A PHOP response regulator 24.0 3E+02 0.01 22.5 9.8 91 71-161 12-121 (136)
120 2qv0_A Protein MRKE; structura 23.8 2.3E+02 0.0077 23.6 7.5 90 70-160 17-126 (143)
121 4dgh_A Sulfate permease family 23.7 3.1E+02 0.011 23.2 8.4 66 60-132 20-95 (130)
122 3h1g_A Chemotaxis protein CHEY 23.6 3E+02 0.01 22.4 8.4 91 71-161 14-127 (129)
123 3cnb_A DNA-binding response re 23.5 3E+02 0.01 22.5 8.3 101 58-162 8-131 (143)
124 2yva_A DNAA initiator-associat 22.9 1.5E+02 0.0053 27.0 6.7 66 59-126 42-145 (196)
125 1x92_A APC5045, phosphoheptose 22.9 99 0.0034 28.5 5.3 66 59-126 46-149 (199)
126 1yio_A Response regulatory pro 22.8 2.8E+02 0.0096 24.9 8.5 90 71-160 13-121 (208)
127 2pl1_A Transcriptional regulat 22.8 2.9E+02 0.0098 21.9 8.2 88 72-159 10-116 (121)
128 4f54_A Uncharacterized protein 22.7 60 0.0021 31.1 3.7 25 78-102 65-89 (197)
129 3crn_A Response regulator rece 22.6 1.7E+02 0.0059 24.1 6.5 90 71-160 12-120 (132)
130 2rjn_A Response regulator rece 22.4 2.3E+02 0.0078 24.0 7.4 98 59-160 8-125 (154)
131 2zay_A Response regulator rece 22.2 2.8E+02 0.0094 23.1 7.8 89 71-159 17-126 (147)
132 1k66_A Phytochrome response re 22.0 3E+02 0.01 22.7 8.0 90 70-159 14-136 (149)
133 3e02_A Uncharacterized protein 22.0 5.4E+02 0.018 26.1 11.0 53 210-263 25-79 (311)
134 2h9a_B CO dehydrogenase/acetyl 21.8 4.8E+02 0.016 26.4 10.5 141 217-366 74-229 (310)
135 3t6k_A Response regulator rece 21.8 2.9E+02 0.0099 22.9 7.8 91 71-161 13-124 (136)
136 2nva_A Arginine decarboxylase, 21.7 2.1E+02 0.0072 29.2 8.0 114 220-358 71-188 (372)
137 1k68_A Phytochrome response re 21.5 3.1E+02 0.011 22.2 7.8 89 71-159 11-129 (140)
138 2xwp_A Sirohydrochlorin cobalt 21.4 5.1E+02 0.017 25.1 10.5 140 219-382 62-205 (264)
139 3hdg_A Uncharacterized protein 21.0 1.6E+02 0.0056 24.3 6.0 91 71-161 16-125 (137)
140 1h7n_A 5-aminolaevulinic acid 20.7 1.9E+02 0.0065 29.9 7.1 59 204-264 57-124 (342)
141 2r47_A Uncharacterized protein 20.7 51 0.0017 30.5 2.6 58 85-143 73-144 (157)
142 3qrx_B Melittin; calcium-bindi 20.3 37 0.0013 21.5 1.1 12 550-561 14-25 (26)
143 3nav_A Tryptophan synthase alp 20.2 6.4E+02 0.022 24.9 11.3 26 314-339 73-98 (271)
144 1zlp_A PSR132, petal death pro 20.1 1.7E+02 0.0057 30.1 6.6 80 320-406 83-168 (318)
No 1
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.7e-50 Score=421.27 Aligned_cols=285 Identities=29% Similarity=0.482 Sum_probs=235.9
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--CCCHHHHHHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--GVNLPILLNAIVA 261 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~--~~~l~eLL~~l~~ 261 (622)
+..++|++++||+++|+||.++..+|+.|++++++|++|++.+.+.|+++|.|+|+|++.||.+. ...+.+|++.+.+
T Consensus 3 ~~~~~v~is~GC~~~C~fC~~~~~~g~~r~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~ 82 (304)
T 2qgq_A 3 RPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNS 82 (304)
T ss_dssp CSEEEEESBCCC-------------CCCCBCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCcCccCCccccCCCceeeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999998653 3579999999976
Q ss_pred hCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEE
Q 007001 262 ELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQI 341 (622)
Q Consensus 262 ~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i 341 (622)
.+ +..|+++.+++|..+++.+ +..+...+++|+++++|+||+|+++|+.|+|+++.+++.++++.+++++||+.+
T Consensus 83 -~~--gi~~ir~~~~~p~~l~~e~--l~~l~~~g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i 157 (304)
T 2qgq_A 83 -LN--GEFWIRVMYLHPDHLTEEI--ISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVL 157 (304)
T ss_dssp -SS--SSCEEEECCCCGGGCCHHH--HHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEE
T ss_pred -cC--CCcEEEEeeeecccCCHHH--HHHHHhCCCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEE
Confidence 44 5679999889999887755 555666666789999999999999999999999999999999999998889999
Q ss_pred EEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHHHHHHHHHHHHHHH--hhhhccCCC
Q 007001 342 ATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVVKKRSRELTSVFEA--FTPYLGMEG 418 (622)
Q Consensus 342 ~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~k~R~~~L~~l~~~--~~~~~~~vG 418 (622)
.+|||+||||||++||++|++++++++++.+++|+|+|+||||+++++ ++|++++++|.++|+++++. .+++++++|
T Consensus 158 ~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~~~~~p~pgT~~~~~~~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g 237 (304)
T 2qgq_A 158 RTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVG 237 (304)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeeCCCCChhHhCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999998 89999999999999999985 468899999
Q ss_pred cEEEEEEEEEecCCceEEEeecCCeEE-----EECCCCCCCCCEEEEEEEEEeeceEEEEEEe
Q 007001 419 RVERIWITEIAADGIHLVGHTKGYVQV-----LVPSTGNMLGTSALVKITSVGRWSVFGEVIK 476 (622)
Q Consensus 419 ~~~~Vlve~~~~~~~~~~Grt~~y~~V-----~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~ 476 (622)
++++||||+. . +..+.||+.+|.+| +|+.+. .+|++|+|+|+++..++|.|+++-
T Consensus 238 ~~~~vl~e~~-~-~~~~~g~~~~~~~~~dg~~~~~~~~-~~g~~~~v~i~~~~~~~l~g~~~~ 297 (304)
T 2qgq_A 238 KKLKFLVEGK-E-GKFLVGRTWTEAPEVDGVVFVRGKG-KIGDFLEVVIKEHDEYDMWGSVIL 297 (304)
T ss_dssp CEEEEEEEEE-E-TTEEEEEETTCCTTTSCCEEEESCC-CTTCEEEEEEEEEETTEEEEEEC-
T ss_pred CEEEEEEEec-C-CCEEEEECCCCcEeccceEEEcCCC-CCCCEEEEEEEEeeCCeEEEEEEE
Confidence 9999999986 2 33688999999988 887544 689999999999999999999763
No 2
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=99.91 E-value=7.3e-24 Score=233.17 Aligned_cols=193 Identities=17% Similarity=0.237 Sum_probs=156.9
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCC---CcCCCCHHHHHHHHHHHHHC----CCcEEEEeecCCCCCCCCcCCCHHHHH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARG---HLGSYTVESLVGRVRTVIAD----GVKEVWLSSEDTGAYGRDIGVNLPILL 256 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG---~~rsr~~e~Iv~Ei~~L~~~----GvkeI~L~g~d~~~yg~d~~~~l~eLL 256 (622)
+...||.|. +|+++|+||..+...+ ..+.++++.|++|++.+.+. ++..|.|.|++.+.... ..+.+|+
T Consensus 52 ~~~lYihIp-fC~~~C~yC~~~~~~~~~~~~~~~~~~~l~~Ei~~~~~~~~~~~i~~i~fgGGtpt~l~~---~~l~~ll 127 (457)
T 1olt_A 52 PLSLYVHIP-FCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNK---AQISRLM 127 (457)
T ss_dssp CEEEEEEEC-EESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSCH---HHHHHHH
T ss_pred ceEEEEEcC-CCCCCCCCCCCceeccCCcchHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcccCCH---HHHHHHH
Confidence 456789998 5999999999876432 23456789999999987664 46678887754332222 3578888
Q ss_pred HHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 007001 257 NAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336 (622)
Q Consensus 257 ~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 336 (622)
+.+.+.++.....++++. ++|..+++.. +..+... + +++|++|+||+++++|+.|+|+++.+++.++++.++++
T Consensus 128 ~~i~~~~~~~~~~eitie-~~p~~l~~e~--l~~L~~~-G-~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~- 201 (457)
T 1olt_A 128 KLLRENFQFNADAEISIE-VDPREIELDV--LDHLRAE-G-FNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREI- 201 (457)
T ss_dssp HHHHHHSCEEEEEEEEEE-ECSSSCCTHH--HHHHHHT-T-CCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT-
T ss_pred HHHHHhCCCCCCcEEEEE-EccCcCCHHH--HHHHHHc-C-CCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHc-
Confidence 888775431134577875 7999887644 4444443 3 79999999999999999999999999999999999999
Q ss_pred CCCE-EEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc
Q 007001 337 PGMQ-IATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387 (622)
Q Consensus 337 pgi~-i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~ 387 (622)
|+. +.+|+|+|+||||.+++.+|++++.++++++++++.|+|.|||+++.
T Consensus 202 -G~~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~ 252 (457)
T 1olt_A 202 -GFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQ 252 (457)
T ss_dssp -TCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGG
T ss_pred -CCCcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHh
Confidence 997 99999999999999999999999999999999999999999999875
No 3
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=99.88 E-value=5.6e-22 Score=210.36 Aligned_cols=193 Identities=15% Similarity=0.192 Sum_probs=155.0
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCC-cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCC
Q 007001 186 VEILPINVGCLGACTYCKTKHARGH-LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELP 264 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~-~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~ 264 (622)
.+.|.+++||+++|.||.++...+. .+.+++++|+++++.+.+.|+++|.|+|++...|..+ ...+.++++.+.+..+
T Consensus 62 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~-~~~~~~l~~~ik~~~~ 140 (350)
T 3t7v_A 62 NCFIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYED-PNRFVELVQIVKEELG 140 (350)
T ss_dssp EEEEEEECCCCCCCTTCTTCTTSCCCCCBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHS-THHHHHHHHHHHHHHC
T ss_pred EEeeecCCCcCCCCCcCCCcCcCCCCceeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccC-HHHHHHHHHHHHhhcC
Confidence 4678999999999999998755432 2237999999999999999999999988664333211 1356788888875432
Q ss_pred CCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 007001 265 PDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATD 344 (622)
Q Consensus 265 ~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td 344 (622)
..+. +++..+++.. +..+... + +.++.+|+||+++++++.|+++++.++++++++.+++. |+.+.++
T Consensus 141 ----i~i~---~s~g~~~~e~--l~~L~~a-G-~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 207 (350)
T 3t7v_A 141 ----LPIM---ISPGLMDNAT--LLKAREK-G-ANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQ--GYCVEDG 207 (350)
T ss_dssp ----SCEE---EECSSCCHHH--HHHHHHT-T-EEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHH--TCEEEEE
T ss_pred ----ceEE---EeCCCCCHHH--HHHHHHc-C-CCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHc--CCeEccc
Confidence 1232 2344444432 4444443 3 78899999999999999999999999999999999999 9999999
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCH
Q 007001 345 IICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPS 393 (622)
Q Consensus 345 ~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~ 393 (622)
+|+|+ |||.+++.++++++++++++.+.+++|.|.||||+++.+..+.
T Consensus 208 ~i~Gl-get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~ 255 (350)
T 3t7v_A 208 ILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSN 255 (350)
T ss_dssp EEESS-SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCC
T ss_pred eEeec-CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCCh
Confidence 99999 9999999999999999999999999999999999998764443
No 4
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=99.87 E-value=4.1e-21 Score=202.86 Aligned_cols=193 Identities=20% Similarity=0.272 Sum_probs=155.1
Q ss_pred EEEEEeCCCCCCCCCCcccCccCCCc--CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhC
Q 007001 186 VEILPINVGCLGACTYCKTKHARGHL--GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 186 ~a~I~isrGC~~~CsFC~ip~~rG~~--rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l 263 (622)
.+.|.+++||+++|.||..+...+.. ..+++++|+++++.+.+.|+++|.|+|++...+.. ..+.++++.+.+.
T Consensus 54 ~~~i~~t~~C~~~C~fC~~~~~~~~~~~~~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~---~~~~~li~~i~~~- 129 (348)
T 3iix_A 54 RAIIEFSNVCRKNCLYCGLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMP---DVISDIVKEIKKM- 129 (348)
T ss_dssp EEEEEEECCCSCCCTTCTTCTTCCSSCCCBCCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTT---HHHHHHHHHHHTT-
T ss_pred EEEeEecCCcCCcCccCCCCCCCCCcCceeCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccH---HHHHHHHHHHHhc-
Confidence 46789999999999999987655432 23699999999999999999999999876333322 2467777777642
Q ss_pred CCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEE
Q 007001 264 PPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIAT 343 (622)
Q Consensus 264 ~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~t 343 (622)
...+.+ ++..+++.. +..+... + +..+.+++||.++++++.++++.+.+++.++++.++++ |+.+.+
T Consensus 130 ----~~~i~~---s~g~l~~e~--l~~L~~a-g-~~~v~i~let~~~~~~~~i~~~~~~~~~~~~i~~~~~~--Gi~v~~ 196 (348)
T 3iix_A 130 ----GVAVTL---SLGEWPREY--YEKWKEA-G-ADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKEL--GYETGA 196 (348)
T ss_dssp ----SCEEEE---ECCCCCHHH--HHHHHHH-T-CCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ----CceEEE---ecCCCCHHH--HHHHHHh-C-CCEEeeeeeeCCHHHHHHhCCCcCHHHHHHHHHHHHHh--CCeecc
Confidence 123332 333343322 3333332 2 57889999999999999999999999999999999999 999999
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHH
Q 007001 344 DIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAV 395 (622)
Q Consensus 344 d~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~ 395 (622)
++|+|+||||.+++.++++++++++++.+.+++|.|.||||+++.+..+.+.
T Consensus 197 ~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e 248 (348)
T 3iix_A 197 GSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTL 248 (348)
T ss_dssp CBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHH
T ss_pred ceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999887666543
No 5
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1
Probab=99.84 E-value=1.5e-19 Score=193.21 Aligned_cols=194 Identities=16% Similarity=0.204 Sum_probs=152.3
Q ss_pred cEEEEEe-CCCCCCCCCCcccCccC--C--CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc-CCCHHHHHHH
Q 007001 185 FVEILPI-NVGCLGACTYCKTKHAR--G--HLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI-GVNLPILLNA 258 (622)
Q Consensus 185 ~~a~I~i-srGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~-~~~l~eLL~~ 258 (622)
....|.+ ++||+++|.||.++... + +++.+++++|+++++.+.+.|+++|.|+|... ++... ...+.++++.
T Consensus 65 ~~~~i~i~t~~C~~~C~yC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~~~gg~~--~p~~~~~~~l~~ll~~ 142 (369)
T 1r30_A 65 VSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWK--NPHERDMPYLEQMVQG 142 (369)
T ss_dssp EEEEEEEECSCBSSCCSSCSCBTTSCTTCCCCCCCCHHHHHHHHHHHHHTTCSEEEEEECCS--SCCTTTHHHHHHHHHH
T ss_pred EEEEEEEECCCCcccCccCCCCCcCCCCCcccccCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CCCcCCHHHHHHHHHH
Confidence 3456786 99999999999987642 2 35668999999999999999999999987421 11111 1346777777
Q ss_pred HHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCC
Q 007001 259 IVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPG 338 (622)
Q Consensus 259 l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pg 338 (622)
+.+. +. .+. +++..+++.. +..+... + +.++++++|| ++++++.|+|+++.++++++++.++++ |
T Consensus 143 ik~~----g~-~i~---~t~G~l~~e~--l~~L~~a-G-vd~v~i~les-~~e~~~~i~~~~~~~~~l~~i~~a~~~--G 207 (369)
T 1r30_A 143 VKAM----GL-EAC---MTLGTLSESQ--AQRLANA-G-LDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDA--G 207 (369)
T ss_dssp HHHT----TS-EEE---EECSSCCHHH--HHHHHHH-C-CCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHH--H
T ss_pred HHHc----CC-eEE---EecCCCCHHH--HHHHHHC-C-CCEEeecCcC-CHHHHHHhCCCCCHHHHHHHHHHHHHc--C
Confidence 7653 22 232 2344444322 4444433 3 7899999999 999999999999999999999999999 9
Q ss_pred CEEEEEEEEcCCCCCHHHHHHHHHHHHhcC--CCeEEEEEeeeCCCCccccCCCCCHHHH
Q 007001 339 MQIATDIICGFPGETDEDFNQTVNLIKEYK--FPQVHISQFYPRPGTPAARMKKVPSAVV 396 (622)
Q Consensus 339 i~i~td~IvGfPGETeedf~eTl~fl~el~--~d~v~i~~ysP~PGTpa~~~~~v~~~~~ 396 (622)
+.+.+++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.||||+++.+..+.+..
T Consensus 208 i~v~~~~I~Gl-~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~ 266 (369)
T 1r30_A 208 IKVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDF 266 (369)
T ss_dssp CEEECCEEECS-SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHH
T ss_pred CeeeeeeEeeC-CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHH
Confidence 99999999999 999999999999999997 8899999999999999998776666543
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=99.69 E-value=3.3e-15 Score=157.41 Aligned_cols=194 Identities=13% Similarity=0.228 Sum_probs=153.2
Q ss_pred cEEEEEeCCCCCCCCCCcccCcc-------CCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHH
Q 007001 185 FVEILPINVGCLGACTYCKTKHA-------RGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLN 257 (622)
Q Consensus 185 ~~a~I~isrGC~~~CsFC~ip~~-------rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~ 257 (622)
....|.++++||++|.||..... .+.....+.+++.+.++.+.+.|++.|.|+|++...+ .++.++++
T Consensus 14 ~~l~i~~T~~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~~~~g~~~i~~tGGEPll~-----~~l~~li~ 88 (340)
T 1tv8_A 14 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR-----RDLDVLIA 88 (340)
T ss_dssp CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTCCEEEEESSCGGGS-----TTHHHHHH
T ss_pred CeEEEEeCCCcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHHHHCCCCEEEEeCCCccch-----hhHHHHHH
Confidence 45678999999999999987642 1234567899999999999989999999998766554 35788888
Q ss_pred HHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCC-CHHHHHHHHHHHHHhC
Q 007001 258 AIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREY-TLSDFRTVVDTLIELV 336 (622)
Q Consensus 258 ~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~-t~e~~~~~I~~lr~~~ 336 (622)
.+.+ .. ....+.+. +|...+.+.+ ..+... + +.+|.++++|.++++++.++++. +.+++.+.++.++++
T Consensus 89 ~~~~-~~--~~~~i~i~-TNG~ll~~~~---~~L~~~-g-~~~v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~- 158 (340)
T 1tv8_A 89 KLNQ-ID--GIEDIGLT-TNGLLLKKHG---QKLYDA-G-LRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSI- 158 (340)
T ss_dssp HHTT-CT--TCCEEEEE-ECSTTHHHHH---HHHHHH-T-CCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHT-
T ss_pred HHHh-CC--CCCeEEEE-eCccchHHHH---HHHHHC-C-CCEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHC-
Confidence 8764 22 33366664 6776665433 333332 2 57899999999999999999887 999999999999999
Q ss_pred CCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCC-CCCHHHH
Q 007001 337 PGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMK-KVPSAVV 396 (622)
Q Consensus 337 pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~-~v~~~~~ 396 (622)
|+.+...+++ +||++.+++.++++++.+++++ +.+..|+|.++|+.+... .++.++.
T Consensus 159 -g~~v~i~~vv-~~g~n~~ei~~~~~~~~~~g~~-~~~i~~~p~~~~~~~~~~~~~~~~e~ 216 (340)
T 1tv8_A 159 -GLNVKVNVVI-QKGINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVTKDEM 216 (340)
T ss_dssp -TCEEEEEEEE-CTTTTGGGHHHHHHHHHHTTCC-EEEEECCCBCSSSSBCCSSCCCHHHH
T ss_pred -CCCEEEEEEE-eCCCCHHHHHHHHHHHHhcCCe-EEEEEeeEcCCCccchhhcCCCHHHH
Confidence 9888888877 7999999999999999999997 788889999999876544 5665543
No 7
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=99.56 E-value=1.3e-13 Score=136.63 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=130.2
Q ss_pred EEEeCCCCCCCCCCcccCccC--CCcCCCCHHHHHHHHHHHHHC---CCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh
Q 007001 188 ILPINVGCLGACTYCKTKHAR--GHLGSYTVESLVGRVRTVIAD---GVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE 262 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~r--G~~rsr~~e~Iv~Ei~~L~~~---GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~ 262 (622)
++.++.||+++|.||..+... +..+.+++++++++++.+.+. +...|.|+|++...+. ..+.++++.+.+.
T Consensus 22 ~~i~t~~Cn~~C~~C~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~GGEP~l~~----~~l~~l~~~~~~~ 97 (245)
T 3c8f_A 22 FITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQA----EFVRDWFRACKKE 97 (245)
T ss_dssp EEEEESCCSCCCTTCSCGGGCCTTCSEEECHHHHHHHHGGGHHHHTSTTCEEEEEESCGGGGH----HHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCCCCCCCchhcccccCccCCHHHHHHHHHHhhhhhcCCCCeEEEECCCcCCCH----HHHHHHHHHHHHc
Confidence 344677999999999987543 345678999999999987764 4789999997655431 1246777776542
Q ss_pred CCCCCceeEEEeecCCcc--hhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCE
Q 007001 263 LPPDGSTMLRIGMTNPPF--ILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQ 340 (622)
Q Consensus 263 l~~~~~~~iri~~~~p~~--i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~ 340 (622)
+. .+.+. ++... ..+. +.+++.. +..+.++++|+++++++.+++. +.+++.+.++.++++ |+.
T Consensus 98 ----~~-~i~i~-Tng~~~~~~~~---~~~l~~~---~~~v~isld~~~~~~~~~~~~~-~~~~~~~~i~~l~~~--g~~ 162 (245)
T 3c8f_A 98 ----GI-HTCLD-TNGFVRRYDPV---IDELLEV---TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFAKYLANK--NVK 162 (245)
T ss_dssp ----TC-CEEEE-ECCCCCCCCHH---HHHHHHT---CSEEEEECCCSSHHHHHHHHSS-CSHHHHHHHHHHHHH--TCC
T ss_pred ----CC-cEEEE-eCCCcCcCHHH---HHHHHHh---CCEEEEeCCCCCHHHhhhccCC-CHHHHHHHHHHHHhc--CCE
Confidence 22 45554 34432 2233 3344433 4679999999999999999654 469999999999999 877
Q ss_pred EEEEEEEcCCC--CCHHHHHHHHHHHHhcCC-CeEEEEEeeeCCCCc
Q 007001 341 IATDIICGFPG--ETDEDFNQTVNLIKEYKF-PQVHISQFYPRPGTP 384 (622)
Q Consensus 341 i~td~IvGfPG--ETeedf~eTl~fl~el~~-d~v~i~~ysP~PGTp 384 (622)
+...+++ .|| ++.+++.++++++.++++ ..+++.+|.|.++++
T Consensus 163 v~i~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3c8f_A 163 VWIRYVV-VPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHK 208 (245)
T ss_dssp EEEEEEE-CTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHH
T ss_pred EEEEEee-cCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhH
Confidence 7666655 565 678999999999999995 889999999988764
No 8
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.54 E-value=2.2e-13 Score=143.73 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=130.5
Q ss_pred EEeC-CCCCCCCCCcccCccC-----CCcCCCCHHHHHHHHHHHHHC------C--------------CcEEEEe-ecCC
Q 007001 189 LPIN-VGCLGACTYCKTKHAR-----GHLGSYTVESLVGRVRTVIAD------G--------------VKEVWLS-SEDT 241 (622)
Q Consensus 189 I~is-rGC~~~CsFC~ip~~r-----G~~rsr~~e~Iv~Ei~~L~~~------G--------------vkeI~L~-g~d~ 241 (622)
+..+ +||+++|.||..+... +..+..++++|++++..+.+. | ++.|.|+ |++.
T Consensus 74 i~~~~~gCnl~C~fC~~~~~~~~~~~~~~~~~~~eei~~~i~~~~~~~~~~~~g~~~v~~~~~~e~~~~~~v~~sggGEP 153 (342)
T 2yx0_A 74 MTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEEAWNPTHAAISLSGEP 153 (342)
T ss_dssp EESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHHHTSCCEEEECSSSCG
T ss_pred EEeChhhhhCcCcccCCCCCCCcccccccCcCCHHHHHHHHHHHHHHHhhccCCCcccchhhhhhccCCCEEEEcCCCcc
Confidence 3344 8999999999987442 145678999999998775431 2 4678886 6555
Q ss_pred CCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC---
Q 007001 242 GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR--- 318 (622)
Q Consensus 242 ~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR--- 318 (622)
..+ ..+.++++.+.+. + ..+.+. ++... .+. +..+...+.....+++++++.++++++.+++
T Consensus 154 ll~-----~~l~~ll~~~~~~----g-~~i~l~-TNG~~-~e~---l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~~ 218 (342)
T 2yx0_A 154 MLY-----PYMGDLVEEFHKR----G-FTTFIV-TNGTI-PER---LEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMI 218 (342)
T ss_dssp GGS-----TTHHHHHHHHHHT----T-CEEEEE-ECSCC-HHH---HHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSS
T ss_pred cch-----hhHHHHHHHHHHC----C-CcEEEE-cCCCc-HHH---HHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCCc
Confidence 544 2578898888762 3 255554 45543 222 3444443223579999999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCc
Q 007001 319 EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTP 384 (622)
Q Consensus 319 ~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTp 384 (622)
+++.+++.+.++.+++. |+.+...+++ +||++.+++.++++++++++++++++.+|.|.|+++
T Consensus 219 ~~~~~~~~~~i~~l~~~--g~~v~i~~~l-~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~ 281 (342)
T 2yx0_A 219 PDGWERILRFLELMRDL--PTRTVVRLTL-VKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR 281 (342)
T ss_dssp SCHHHHHHHHHHHHTTC--SSEEEEEEEE-CTTTTCCCHHHHHHHHHHHCCSEEEEEECC------
T ss_pred ccHHHHHHHHHHHHHhC--CCCEEEEEEE-ECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc
Confidence 57899999999999998 8888888888 799999999999999999999999999999877665
No 9
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=1.1e-11 Score=128.85 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=111.6
Q ss_pred cEEEEEeC-CCCCCCCCCcccCccC--C-------CcCCCCHHHHHHHHHHHHH------CC---------------CcE
Q 007001 185 FVEILPIN-VGCLGACTYCKTKHAR--G-------HLGSYTVESLVGRVRTVIA------DG---------------VKE 233 (622)
Q Consensus 185 ~~a~I~is-rGC~~~CsFC~ip~~r--G-------~~rsr~~e~Iv~Ei~~L~~------~G---------------vke 233 (622)
....|.++ .||+++|.||..+... | ..+..++++|++++..+.+ .| .+.
T Consensus 51 ~~l~i~~t~~~Cn~~C~fC~~~~~~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~~~~~~~g~~~v~~~~r~~~~~~~~~ 130 (311)
T 2z2u_A 51 RCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKH 130 (311)
T ss_dssp GEEEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCE
T ss_pred CeEEeccChhHHhCcCcccCCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHhhccCCCcCcchhhhhhhccCCCE
Confidence 34567888 7999999999866422 1 2467889999988766532 12 456
Q ss_pred EEEe-ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHH
Q 007001 234 VWLS-SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV 312 (622)
Q Consensus 234 I~L~-g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~v 312 (622)
|.|+ |++...+ ..+.++++.+.+. +. .+.+. ++... .+. +..+ + ...+.+++++.++++
T Consensus 131 i~~s~gGEPll~-----~~l~~li~~~~~~----g~-~~~l~-TNG~~-~~~---l~~L----~-~~~v~isld~~~~~~ 190 (311)
T 2z2u_A 131 VAISLSGEPTLY-----PYLDELIKIFHKN----GF-TTFVV-SNGIL-TDV---IEKI----E-PTQLYISLDAYDLDS 190 (311)
T ss_dssp EEECSSSCGGGS-----TTHHHHHHHHHHT----TC-EEEEE-ECSCC-HHH---HHHC----C-CSEEEEECCCSSTTT
T ss_pred EEEeCCcCccch-----hhHHHHHHHHHHC----CC-cEEEE-CCCCC-HHH---HHhC----C-CCEEEEEeecCCHHH
Confidence 8887 5554443 3578898888763 32 55554 45432 222 3322 2 368999999999999
Q ss_pred HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 313 LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 313 Lk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
++.++++ ++.+++.+.++.+++. | .+...+++ .||.++ ++.++++++.+++++.+++++|+|.++++.
T Consensus 191 ~~~i~~~~~~~~~~v~~~i~~l~~~--g-~v~i~~~~-~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~~ 260 (311)
T 2z2u_A 191 YRRICGGKKEYWESILNTLDILKEK--K-RTCIRTTL-IRGYND-DILKFVELYERADVHFIELKSYMHVGYSQK 260 (311)
T ss_dssp C----CCCHHHHHHHHHHHHHHTTS--S-SEEEEEEE-CTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------
T ss_pred HHHHhCCccchHHHHHHHHHHHHhc--C-CEEEEEEE-ECCcch-hHHHHHHHHHHcCCCEEEEEeeEEcccccc
Confidence 9999887 6789999999999887 6 45444443 577777 899999999999999999999999999873
No 10
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=99.23 E-value=3.7e-10 Score=122.66 Aligned_cols=182 Identities=18% Similarity=0.215 Sum_probs=132.0
Q ss_pred CccEEEEEeCCCCCCCCCCcccCccCC-CcCCCCHHHHHHHHHHHHH-CCCcEEEEeecCCCCCCCCcCCCHHHHHHHHH
Q 007001 183 NKFVEILPINVGCLGACTYCKTKHARG-HLGSYTVESLVGRVRTVIA-DGVKEVWLSSEDTGAYGRDIGVNLPILLNAIV 260 (622)
Q Consensus 183 ~~~~a~I~isrGC~~~CsFC~ip~~rG-~~rsr~~e~Iv~Ei~~L~~-~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~ 260 (622)
.+....+.++.||+.+|.||......+ ..+..+.+++.+.++.+.+ .|+++|.|+|++...+.. ..|.++++.+.
T Consensus 113 yp~~v~l~vT~~Cnl~C~yC~~~~~~~~~~~~ls~eei~~~i~~i~~~~gi~~V~ltGGEPll~~d---~~L~~il~~l~ 189 (416)
T 2a5h_A 113 YPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSD---ETLEYIIAKLR 189 (416)
T ss_dssp SSSEEEEEEESCCSSCCTTCTTTTTTTSSSSBCCHHHHHHHHHHHHTCTTCCEEEEEESCTTSSCH---HHHHHHHHHHH
T ss_pred CCCEEEEecCCCccccCcCCCCcccCCCccCCCCHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCH---HHHHHHHHHHH
Confidence 455678999999999999997765434 3356889999999998887 699999999987766521 13778888886
Q ss_pred HhCCCCCceeEEEee----cCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 007001 261 AELPPDGSTMLRIGM----TNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELV 336 (622)
Q Consensus 261 ~~l~~~~~~~iri~~----~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~ 336 (622)
+ ++ +...+++++ +.|..+++.+ .+.++.. ..+++++++.+++ . .+ +++.++++.++++
T Consensus 190 ~-~~--~v~~i~i~Tng~~~~p~~it~e~---l~~L~~~---~~v~Isl~~~~~~---e----i~-~~v~~ai~~L~~a- 251 (416)
T 2a5h_A 190 E-IP--HVEIVRIGSRTPVVLPQRITPEL---VNMLKKY---HPVWLNTHFNHPN---E----IT-EESTRACQLLADA- 251 (416)
T ss_dssp T-ST--TCCEEEEECSHHHHCGGGCCHHH---HHHHGGG---CSEEEEECCCSGG---G----CC-HHHHHHHHHHHHT-
T ss_pred h-cC--CccEEEEEecccccccccCCHHH---HHHHHhc---CcEEEEEecCCHH---H----Hh-HHHHHHHHHHHHc-
Confidence 5 43 455778763 1344444433 3333322 4678899987773 2 23 8999999999999
Q ss_pred CCCEEEEEEEE--cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcccc
Q 007001 337 PGMQIATDIIC--GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAAR 387 (622)
Q Consensus 337 pgi~i~td~Iv--GfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~ 387 (622)
|+.+....++ |+ +++.+++.+.++++.+++++...++.+.+.+||+.+.
T Consensus 252 -Gi~v~i~~vll~Gv-Nd~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~ 302 (416)
T 2a5h_A 252 -GVPLGNQSVLLRGV-NDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFR 302 (416)
T ss_dssp -TCCEEEEEECCTTT-TCSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGC
T ss_pred -CCEEEEEEEEECCC-CCCHHHHHHHHHHHHHcCCceEEEeecCCCCCccccc
Confidence 8766555444 66 4888999999999999998776677666678988654
No 11
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=99.05 E-value=2.4e-09 Score=115.56 Aligned_cols=184 Identities=16% Similarity=0.300 Sum_probs=126.1
Q ss_pred ccEEEEEeCCCCCCCCCCcccCccCCCcCCCCHHHHHHHHHHHHH----------CCCcEEEEee-cCCCCCCCCcCCCH
Q 007001 184 KFVEILPINVGCLGACTYCKTKHARGHLGSYTVESLVGRVRTVIA----------DGVKEVWLSS-EDTGAYGRDIGVNL 252 (622)
Q Consensus 184 ~~~a~I~isrGC~~~CsFC~ip~~rG~~rsr~~e~Iv~Ei~~L~~----------~GvkeI~L~g-~d~~~yg~d~~~~l 252 (622)
.....|.++.||+.+|.||..+.. |..|..++++|++++..... .++..|+|+| +....+. ..+
T Consensus 114 r~tlcVSsq~GCnl~C~fC~tg~~-g~~r~Lt~eEIv~qv~~~~~~~~~~g~~gg~~i~~Ivf~GgGEPLln~----d~v 188 (404)
T 3rfa_A 114 RATLCVSSQVGCALECKFCSTAQQ-GFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNL----NNV 188 (404)
T ss_dssp CEEEECCCEEECSSCCTTCGGGTT-CEEEECCHHHHHHHHHHHHHHHCCHHHHSSCSCSEEEECSSSCGGGCH----HHH
T ss_pred CceEEEEeCCCCCCcCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHhhhcccccCCCccEEEEeCCCCcccCH----HHH
Confidence 345677888999999999987643 45678899999999987654 2478899995 3332220 235
Q ss_pred HHHHHHHHHhCCCCCc----eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh---cCCCCHHHH
Q 007001 253 PILLNAIVAELPPDGS----TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM---NREYTLSDF 325 (622)
Q Consensus 253 ~eLL~~l~~~l~~~~~----~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M---nR~~t~e~~ 325 (622)
.++++.+.+.. +. ..+.++ ++-. + +.++++ +... -..+.+.+.+.+++..+.+ +++++.+++
T Consensus 189 ~~~i~~lk~~~---Gl~~s~r~itls-TnG~-~-p~i~~L---~~~~--d~~LaiSLka~d~e~~~~i~pv~~~~~le~v 257 (404)
T 3rfa_A 189 VPAMEIMLDDF---GFGLSKRRVTLS-TSGV-V-PALDKL---GDMI--DVALAISLHAPNDEIRDEIVPINKKYNIETF 257 (404)
T ss_dssp HHHHHHHHSTT---TTCCCGGGEEEE-ESCC-H-HHHHHH---HHHC--CCEEEEECCCSSHHHHHHHSGGGGTSCHHHH
T ss_pred HHHHHHHHhhc---CcCcCCCceEEE-CCCc-H-HHHHHH---HHhh--cceEEecccCCCHHHHHHhcCCccCCCHHHH
Confidence 66666665421 22 256665 3321 2 333333 3332 2367799999999998665 468999999
Q ss_pred HHHHHHH-HHhCC---CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCcc
Q 007001 326 RTVVDTL-IELVP---GMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 326 ~~~I~~l-r~~~p---gi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa 385 (622)
++.++.+ .+.-. .+.+.+-+|-|+ .++++++.+..+|++.++. .+++.+|.|+|++++
T Consensus 258 l~ai~~~~~~~g~~~~~V~ie~vLI~Gv-NDs~e~~~~La~ll~~l~~-~VnLIpynP~~~~~~ 319 (404)
T 3rfa_A 258 LAAVRRYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPC-KINLIPWNPFPGAPY 319 (404)
T ss_dssp HHHHHHHHHHCTTTTTCEEEEEEEBTTT-TCSHHHHHHHHHHTTTSCE-EEEEEECCCCTTCCC
T ss_pred HHHHHHHHHHhCCCcccEEEEEEEecCC-CCCHHHHHHHHHHHHcCCC-cEEEEeccCCCCCCC
Confidence 9999554 44411 345555555555 7899999999999999874 789999999988753
No 12
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=97.63 E-value=0.00024 Score=75.55 Aligned_cols=164 Identities=13% Similarity=0.200 Sum_probs=104.3
Q ss_pred EEEeCCCCCCCCCCcccCccCCC----cCCCCHHHHHHHHHHHHH-CCCc-EEEEeecCCCCCCCCcCCC-HHHHHHHHH
Q 007001 188 ILPINVGCLGACTYCKTKHARGH----LGSYTVESLVGRVRTVIA-DGVK-EVWLSSEDTGAYGRDIGVN-LPILLNAIV 260 (622)
Q Consensus 188 ~I~isrGC~~~CsFC~ip~~rG~----~rsr~~e~Iv~Ei~~L~~-~Gvk-eI~L~g~d~~~yg~d~~~~-l~eLL~~l~ 260 (622)
.+...+||++.|.||......|. ....+.++++++++...+ .+.+ ..+-+|.++-.|..+.... ..++|+.+.
T Consensus 110 ~ln~y~GC~~~C~YCYl~~~~~~~~~I~v~vN~~eiL~~l~~~l~~~~~~~~~i~~g~~TDpyp~E~~~~ltr~~le~l~ 189 (368)
T 4fhd_A 110 AIPLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAACTSDIVGIDHLTHSLKKAIEFIG 189 (368)
T ss_dssp ECCSEEBCSCCCTTCTHHHHTTTCCSEEEECCHHHHHHHHHHHHHHHTTSCEEEESCSSBCHHHHHTTTCHHHHHHHHHH
T ss_pred eeCCccCCCCCCceEeccccCCCCCeEEEecCHHHHHHHHHHHHhhcCCCceEEEEEcCCCcchhhHHHhHHHHHHHHHH
Confidence 46789999999999987644442 135679999999876443 3433 4556666665553332222 345666665
Q ss_pred HhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCC-CCHHHHHHHHHHHHHhCCCC
Q 007001 261 AELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNRE-YTLSDFRTVVDTLIELVPGM 339 (622)
Q Consensus 261 ~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~-~t~e~~~~~I~~lr~~~pgi 339 (622)
+ . +...+++.+=.+ .++ . |..+...+.+ .+.+.+- ++++-+.+-.+ -+.++-+++++.++++ |+
T Consensus 190 ~-~---~~~~v~i~TKs~-lid-~---L~~l~~~~~v--~V~~Sit--t~~l~r~~EP~aps~~~RL~Ai~~l~~a--Gi 254 (368)
T 4fhd_A 190 A-T---DYGRLRFVTKYE-HVD-H---LLDARHNGKT--RFRFSIN--SRYVINHFEPGTSSFDGRLAAARKVAGA--GY 254 (368)
T ss_dssp H-C---SSEEEEEEESCC-CCG-G---GTTCCCTTCE--EEEEEEC--CHHHHHHHCTTSCCHHHHHHHHHHHHHT--TC
T ss_pred h-C---CCceEEEEeCCc-CHH-H---HHhcCcCCce--EEEEEEc--CHHHHHHcCCCCCCHHHHHHHHHHHHHC--CC
Confidence 4 2 233566653333 232 1 2222222322 4444443 36777888665 5899999999999999 99
Q ss_pred EEEEEEEEcCCCCCH-HHHHHHHHHHHh
Q 007001 340 QIATDIICGFPGETD-EDFNQTVNLIKE 366 (622)
Q Consensus 340 ~i~td~IvGfPGETe-edf~eTl~fl~e 366 (622)
.+...+.-=+|+++. +++.+.++.+.+
T Consensus 255 pv~v~iaPIiP~~~~~e~y~~lle~l~~ 282 (368)
T 4fhd_A 255 KLGFVVAPIYRHEGWERGYFELFQELAR 282 (368)
T ss_dssp EEEEEEEEECCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEeCcCCCCCCHHHHHHHHHHHHH
Confidence 998888777899775 688888886654
No 13
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=97.10 E-value=0.0077 Score=56.82 Aligned_cols=132 Identities=10% Similarity=0.098 Sum_probs=87.1
Q ss_pred cEEEEeecCCCCCCCCcCCCH-HHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCH
Q 007001 232 KEVWLSSEDTGAYGRDIGVNL-PILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSD 310 (622)
Q Consensus 232 keI~L~g~d~~~yg~d~~~~l-~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd 310 (622)
..|.|+|++.+.+ .++ .++++.+.+. + ..+.+. +|.. +.+.. +..++.. ...+.+.+.+.++
T Consensus 5 ~~v~~tGGEPll~-----~~~~~~l~~~~~~~----g-~~~~l~-TNG~-l~~~~--~~~l~~~---~d~v~isld~~~~ 67 (182)
T 3can_A 5 GGVTFCGGEPLLH-----PEFLIDILKRCGQQ----G-IHRAVD-TTLL-ARKET--VDEVMRN---CELLLIDLKSMDS 67 (182)
T ss_dssp CCEEECSSTGGGS-----HHHHHHHHHHHHHT----T-CCEEEE-CTTC-CCHHH--HHHHHHT---CSEEEEECCCSCH
T ss_pred CEEEEEcccccCC-----HHHHHHHHHHHHHC----C-CcEEEE-CCCC-CCHHH--HHHHHhh---CCEEEEECCCCCH
Confidence 3477887665544 234 4777776542 2 244554 4544 33221 3334433 4578899999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC--CCHHHHHHHHHHHHhc-CC-CeEEEEEeeeCCCCc
Q 007001 311 AVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPG--ETDEDFNQTVNLIKEY-KF-PQVHISQFYPRPGTP 384 (622)
Q Consensus 311 ~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG--ETeedf~eTl~fl~el-~~-d~v~i~~ysP~PGTp 384 (622)
+..+.+.. .+.+.+.+.++.+++. |+.+...+.+ .|| ++.+++.+.++++.++ ++ ..+++.+|.|.....
T Consensus 68 ~~~~~~~g-~~~~~i~~~i~~l~~~--g~~v~i~~~v-~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~ 141 (182)
T 3can_A 68 TVHQTFCD-VPNELILKNIRRVAEA--DFPYYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGK 141 (182)
T ss_dssp HHHHHHHS-SCSHHHHHHHHHHHHT--TCCEEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC-----
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHhC--CCeEEEEEEE-ECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHH
Confidence 98877653 3458999999999998 7655444443 344 7889999999999999 88 899999999987665
No 14
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.91 E-value=0.061 Score=50.33 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=70.8
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC-
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK- 118 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~- 118 (622)
.+|.+-|.|=-.-..=...++..|+..||+++.- ..++|+|++++ ...+.++++.+++.+
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~ 98 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGA 98 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCC
Confidence 4677777665554555678889999999998753 36799999988 566777888887765
Q ss_pred --CcEEEEccccccchh-hhcccccEEEcCCc-hHHHHHHHHHHh
Q 007001 119 --KPLVVAGCVPQGSRD-LKELEGVSIVGVQQ-IDRVVEVVEETL 159 (622)
Q Consensus 119 --~~VVVgGC~aq~~pe-~~~~~~d~VvG~~~-~~~l~ell~~~~ 159 (622)
.+|+|||..++...+ +.+...|.+++.+. .....+++.+..
T Consensus 99 ~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 99 DDIPVVLGGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp TTSCEEEEECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 579999976654433 44667788787654 345566665543
No 15
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=91.65 E-value=0.55 Score=42.46 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=58.2
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC--
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK-- 118 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~-- 118 (622)
++.+-|.|=-.-..=...++..|+..||++++- ..+||+|++++ ...+.++++.+++.+
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~ 84 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLE 84 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCT
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCC
Confidence 555555554333444567788999999997632 36799999988 445666777777654
Q ss_pred -CcEEEEcccc---ccchh----hhcccccEEEcCCc
Q 007001 119 -KPLVVAGCVP---QGSRD----LKELEGVSIVGVQQ 147 (622)
Q Consensus 119 -~~VVVgGC~a---q~~pe----~~~~~~d~VvG~~~ 147 (622)
.+|++||-.. +.+++ +.++..|.+++.+.
T Consensus 85 ~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 85 GILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp TCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred CCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCC
Confidence 5689999642 22222 44566788887764
No 16
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=91.26 E-value=2.6 Score=42.80 Aligned_cols=147 Identities=12% Similarity=0.116 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
...+.++.++-++.|.+.|+..|.+.+.....|-... .+..++++.+.+ . ....+... + +. . +.+...
T Consensus 21 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~-~~~~e~~~~i~~-~---~~~~v~~l-~-~n--~---~~i~~a 88 (295)
T 1ydn_A 21 RFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQL-ADSREVMAGIRR-A---DGVRYSVL-V-PN--M---KGYEAA 88 (295)
T ss_dssp SCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGG-TTHHHHHHHSCC-C---SSSEEEEE-C-SS--H---HHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccc-cCHHHHHHHHHh-C---CCCEEEEE-e-CC--H---HHHHHH
Confidence 4589999999999999999999998764322221100 134566655532 1 12233222 2 32 1 223333
Q ss_pred HhCCCCceeecccCCCCCHHHHHh-hcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EcCCCC---CHHHHHHHHHH
Q 007001 292 LRHPCVYSFLHVPVQSGSDAVLSA-MNREY--TLSDFRTVVDTLIELVPGMQIATDII--CGFPGE---TDEDFNQTVNL 363 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgsd~vLk~-MnR~~--t~e~~~~~I~~lr~~~pgi~i~td~I--vGfPGE---Teedf~eTl~f 363 (622)
...+ +..+++.+ ++|+.-.+. +++.. ..+.+.++++.+++. |+.+.+.+. +|.|.+ +.+.+.+.++.
T Consensus 89 ~~~G--~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~ 163 (295)
T 1ydn_A 89 AAAH--ADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAIND--GLAIRGYVSCVVECPYDGPVTPQAVASVTEQ 163 (295)
T ss_dssp HHTT--CSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECSSEETTTEECCHHHHHHHHHH
T ss_pred HHCC--CCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc--CCeEEEEEEEEecCCcCCCCCHHHHHHHHHH
Confidence 4332 56777755 567665543 44432 456667779999999 999987777 454543 56777777777
Q ss_pred HHhcCCCeEEEE
Q 007001 364 IKEYKFPQVHIS 375 (622)
Q Consensus 364 l~el~~d~v~i~ 375 (622)
+.+.+.+.+.+.
T Consensus 164 ~~~~G~d~i~l~ 175 (295)
T 1ydn_A 164 LFSLGCHEVSLG 175 (295)
T ss_dssp HHHHTCSEEEEE
T ss_pred HHhcCCCEEEec
Confidence 889999988887
No 17
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=91.07 E-value=4.6 Score=41.10 Aligned_cols=145 Identities=10% Similarity=0.137 Sum_probs=93.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
...+.++.++-++.|.+.|++.|.+.+.. ..+... .+..++++.+.+ .+ ...+.. +-+. . +.+.
T Consensus 22 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~---~~~~~p~~~d~~~~~~~~~~-~~---~~~~~~--l~~~--~---~~i~ 87 (298)
T 2cw6_A 22 NIVSTPVKIKLIDMLSEAGLSVIETTSFV---SPKWVPQMGDHTEVLKGIQK-FP---GINYPV--LTPN--L---KGFE 87 (298)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEECCEECC---CTTTCGGGTTHHHHHHHSCC-CT---TCBCCE--ECCS--H---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCCc---CcccccccCCHHHHHHHHhh-CC---CCEEEE--EcCC--H---HhHH
Confidence 45789999999999999999999887522 221111 233444444432 21 122222 1232 1 2244
Q ss_pred HHHhCCCCceeecccCCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEE--cCCCC---CHHHHHHHH
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIIC--GFPGE---TDEDFNQTV 361 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~-vLk~MnR~~--t~e~~~~~I~~lr~~~pgi~i~td~Iv--GfPGE---Teedf~eTl 361 (622)
.....+ ...+++.+ +.|+. ..+.+++.. ..+.+.+.++.+++. |+.+..++++ |.|.+ +.+.+.+.+
T Consensus 88 ~a~~ag--~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~--G~~v~~~l~~~~~~~~~~~~~~~~~~~~~ 162 (298)
T 2cw6_A 88 AAVAAG--AKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSA--NISVRGYVSCALGCPYEGKISPAKVAEVT 162 (298)
T ss_dssp HHHHTT--CSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHT--TCEEEEEEETTTCBTTTBSCCHHHHHHHH
T ss_pred HHHHCC--CCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 344333 57788865 66654 346667653 567888899999999 9999999984 44532 678888889
Q ss_pred HHHHhcCCCeEEEE
Q 007001 362 NLIKEYKFPQVHIS 375 (622)
Q Consensus 362 ~fl~el~~d~v~i~ 375 (622)
+.+.+++.+.+.+.
T Consensus 163 ~~~~~~Ga~~i~l~ 176 (298)
T 2cw6_A 163 KKFYSMGCYEISLG 176 (298)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEec
Confidence 99999999988776
No 18
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=90.62 E-value=0.9 Score=52.17 Aligned_cols=89 Identities=13% Similarity=0.256 Sum_probs=67.5
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCCC
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAKK 119 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~~ 119 (622)
.+|.+-|.|--.-..=...+...|+..||++++- ..+||+|++++ ...+.++++.+++.|.
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~L~~~G~ 676 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGR 676 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHHHHhcCC
Confidence 4789999997766666678888999999998764 35799999998 4556778888888775
Q ss_pred ---cEEEEccccccchh-hhcccccEEEcCCc
Q 007001 120 ---PLVVAGCVPQGSRD-LKELEGVSIVGVQQ 147 (622)
Q Consensus 120 ---~VVVgGC~aq~~pe-~~~~~~d~VvG~~~ 147 (622)
+|++||-.+....+ +.+..+|.+++.+.
T Consensus 677 ~~i~VivGG~~p~~d~~~l~~~GaD~~f~~gt 708 (727)
T 1req_A 677 PDILITVGGVIPEQDFDELRKDGAVEIYTPGT 708 (727)
T ss_dssp TTSEEEEEESCCGGGHHHHHHTTEEEEECTTC
T ss_pred CCCEEEEcCCCccccHHHHHhCCCCEEEcCCc
Confidence 78999955554333 45667788888654
No 19
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=90.35 E-value=1.3 Score=51.01 Aligned_cols=99 Identities=14% Similarity=0.272 Sum_probs=70.8
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCCC
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAKK 119 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~~ 119 (622)
.+|.+-|.|--.-..=...++..|+..||++++. ..+||+|++++ ...+..+++.+++.|.
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~ 684 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGR 684 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHHhcCC
Confidence 4799999998766666678889999999998754 25799999998 4556778888888775
Q ss_pred ---cEEEEccccccchh-hhcccccEEEcCC-chHHHHHHHHH
Q 007001 120 ---PLVVAGCVPQGSRD-LKELEGVSIVGVQ-QIDRVVEVVEE 157 (622)
Q Consensus 120 ---~VVVgGC~aq~~pe-~~~~~~d~VvG~~-~~~~l~ell~~ 157 (622)
+|++||-.+....+ +.+..+|.+++.+ ....+.+.+.+
T Consensus 685 ~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~ 727 (762)
T 2xij_A 685 PDILVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLD 727 (762)
T ss_dssp TTSEEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHH
Confidence 78899954444333 4566778888854 33334444433
No 20
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.60 E-value=12 Score=38.09 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIA 289 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~ 289 (622)
.+.+.++.++-++.|.+.|+..|...+. ....... .+..++++.+.+ . ....+... + +. . +.+.
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~~~~~d~~~~~~~~~~-~---~~~~~~~l-~-~~--~---~~i~ 90 (302)
T 2ftp_A 25 QPIEVADKIRLVDDLSAAGLDYIEVGSF---VSPKWVPQMAGSAEVFAGIRQ-R---PGVTYAAL-A-PN--L---KGFE 90 (302)
T ss_dssp SCCCHHHHHHHHHHHHHTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C---TTSEEEEE-C-CS--H---HHHH
T ss_pred CCCCHHHHHHHHHHHHHcCcCEEEECCC---cCccccccccCHHHHHHHhhh-c---CCCEEEEE-e-CC--H---HHHH
Confidence 4679999999999999999999988752 1111110 133445444432 1 22233322 2 31 1 2233
Q ss_pred HHHhCCCCceeecccCCCCCHH-HHHhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CC---CCHHHHHHHH
Q 007001 290 EVLRHPCVYSFLHVPVQSGSDA-VLSAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQTV 361 (622)
Q Consensus 290 ~l~~~~~v~~~l~IGlQSgsd~-vLk~MnR~~--t~e~~~~~I~~lr~~~pgi~i~td~IvGf--PG---ETeedf~eTl 361 (622)
.....+ +..+++-. +.|+. ..+.+++.. ..+.+.+.++.+++. |+.+...+..-| |. -+++.+.+.+
T Consensus 91 ~a~~aG--~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~--G~~V~~~l~~~~~~e~~~~~~~~~~~~~~ 165 (302)
T 2ftp_A 91 AALESG--VKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQH--QVRVRGYISCVLGCPYDGDVDPRQVAWVA 165 (302)
T ss_dssp HHHHTT--CCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHHH
T ss_pred HHHhCC--cCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCeEEEEEEEEeeCCcCCCCCHHHHHHHH
Confidence 344332 56777755 44443 446666653 567788889999999 999988887644 32 2456677777
Q ss_pred HHHHhcCCCeEEEE
Q 007001 362 NLIKEYKFPQVHIS 375 (622)
Q Consensus 362 ~fl~el~~d~v~i~ 375 (622)
+.+.+.+.+.+.+.
T Consensus 166 ~~~~~~G~d~i~l~ 179 (302)
T 2ftp_A 166 RELQQMGCYEVSLG 179 (302)
T ss_dssp HHHHHTTCSEEEEE
T ss_pred HHHHHcCCCEEEEe
Confidence 77779999987776
No 21
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=85.03 E-value=3.1 Score=32.83 Aligned_cols=56 Identities=27% Similarity=0.429 Sum_probs=42.6
Q ss_pred CCCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 416 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 416 ~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
..|..+++.|+....+| .-+|+..+ ..|++++ .++|+.|.++|+........|+++
T Consensus 12 ~~~~~~~~~I~~l~~~G-~Gva~~~g-~~vfV~~--alPGE~V~v~i~k~kk~~~~a~~~ 67 (68)
T 1yez_A 12 EEGEVYDVTIQDIARQG-DGIARIEG-FVIFVPG--TKVGDEVRIKVERVLPKFAFASVV 67 (68)
T ss_dssp CTTEEEEEECCEEETTT-EEEEEETT-EEEEEES--CCTTCEEEEEEEEECSSCEEEEEC
T ss_pred CCCCEEEEEEEEcCCCc-cEEEEECC-EEEECcC--CCCCCEEEEEEEEecCCEEEEEEc
Confidence 35778888888886655 45688765 4577764 478999999999998888888765
No 22
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=84.39 E-value=6.6 Score=39.10 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=65.5
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK 118 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~ 118 (622)
..+|-+-|.+=-.-..=...++..|+..||++++- ..++|+|++++ ...+.++++.+++.+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~ 202 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENG 202 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcC
Confidence 35666665544444445668888999999987531 35699999988 456778888888776
Q ss_pred --CcEEEEccccccchhh-hcccccEEEcCCchHHHHHHHHHHhc
Q 007001 119 --KPLVVAGCVPQGSRDL-KELEGVSIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 119 --~~VVVgGC~aq~~pe~-~~~~~d~VvG~~~~~~l~ell~~~~~ 160 (622)
.+|+|||..++ ++. ..+..| +.+... ...++++.+...
T Consensus 203 ~~~~v~vGG~~~~--~~~~~~igad-~~~~da-~~av~~~~~l~~ 243 (258)
T 2i2x_B 203 IKIPFACGGGAVN--QDFVSQFALG-VYGEEA-ADAPKIADAIIA 243 (258)
T ss_dssp CCCCEEEESTTCC--HHHHHTSTTE-EECSST-THHHHHHHHHHT
T ss_pred CCCcEEEECccCC--HHHHHHcCCe-EEECCH-HHHHHHHHHHHc
Confidence 58999998766 443 244444 444444 345666666543
No 23
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=83.58 E-value=3.5 Score=39.56 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=56.8
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC-
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK- 118 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~- 118 (622)
.+|-+-|.+=-.-..=...++..|+..||++..- ..++|+|++++ ...++++++.+++.+
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~ 168 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGL 168 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCC
Confidence 4666655554444455678889999999998642 34699999988 456778888888765
Q ss_pred ---CcEEEEccccccchhh-hcccccEE
Q 007001 119 ---KPLVVAGCVPQGSRDL-KELEGVSI 142 (622)
Q Consensus 119 ---~~VVVgGC~aq~~pe~-~~~~~d~V 142 (622)
.+|+|||..++ ++. .++..|.+
T Consensus 169 ~~~~~v~vGG~~~~--~~~~~~~gad~~ 194 (210)
T 1y80_A 169 RDRVKVIVGGAPLS--QDFADEIGADGY 194 (210)
T ss_dssp GGGCEEEEESTTCC--HHHHHHHTCSEE
T ss_pred CCCCeEEEECCCCC--HHHHHHcCCeEE
Confidence 57999998765 443 34445543
No 24
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=83.46 E-value=4.1 Score=32.42 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=42.2
Q ss_pred CCCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEE
Q 007001 416 MEGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVI 475 (622)
Q Consensus 416 ~vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v 475 (622)
..|..+++.|+..+.+| .-+|+..+ ..|++++ .++|+.|.++|+...+....|+++
T Consensus 14 ~~~~~~~v~I~~l~~~G-~Gva~~~g-~~vfV~~--alPGE~V~v~i~k~kk~~~~a~~~ 69 (70)
T 1yvc_A 14 EAGKEYEVTIEDMGKGG-DGIARIDG-FVVFVPN--AEKGSVINVKVTAVKEKFAFAERV 69 (70)
T ss_dssp CTTCEEEEECCEECTTS-CEEEEETT-EEEEETT--CCTTCEEEEEEEEECSSCEEEEEC
T ss_pred cCCCEEEEEEEEcCCCc-cEEEEECC-EEEEccC--CCCCCEEEEEEEEeeCCeEEEEEe
Confidence 35778888888876555 45688765 4577764 578999999999998888878754
No 25
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=82.96 E-value=2 Score=48.63 Aligned_cols=95 Identities=9% Similarity=0.062 Sum_probs=65.9
Q ss_pred cEEEEEecccc-cchhHHHHHHHHHHhcCCeeeCC-------------CCCCcEEEEec-----hHHHHHHHHHHhcCCC
Q 007001 59 ETIYMKTFGCS-HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINT-----QSAMDTLIAKCKSAKK 119 (622)
Q Consensus 59 ~~v~i~TlGC~-~N~~Dse~m~~~L~~~G~~~v~~-------------~~~ADlviINT-----~~~~~~ii~~~k~~~~ 119 (622)
.++.+-++|-- .-..=...++..|+..||++++. .++||+|+|++ ...+..+++.+|+.|.
T Consensus 510 ~kvvLatLg~Da~Hd~ga~~va~~l~~aGfeVi~~g~~~tee~v~aa~e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~ 589 (637)
T 1req_B 510 PKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGA 589 (637)
T ss_dssp CBCEEEECSCHHHHHHHHHHHHHHHHHTTCBCCEEECCCHHHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhhCCchhhhhhHHHHHHHHHhCCeeEEeCCCCCCHHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHHHhCCC
Confidence 46888999875 33344668888999999998875 25899999999 3456678888998885
Q ss_pred -cEEEEccccccc----hhhhcccccEEEcCCchHHHHHHHHH
Q 007001 120 -PLVVAGCVPQGS----RDLKELEGVSIVGVQQIDRVVEVVEE 157 (622)
Q Consensus 120 -~VVVgGC~aq~~----pe~~~~~~d~VvG~~~~~~l~ell~~ 157 (622)
+|+|||- +... +++.+ .+|.++..+. ...+++.+
T Consensus 590 ~~V~vgG~-P~~d~~~~~~~~~-G~D~~~~~g~--~~~~~l~~ 628 (637)
T 1req_B 590 KALYLSGA-FKEFGDDAAEAEK-LIDGRLFMGM--DVVDTLSS 628 (637)
T ss_dssp SEEEEESC-GGGGGGGHHHHHH-HCCCEECTTC--CHHHHHHH
T ss_pred CeEEEeCC-CCccchhhHHHHh-ccceEecCCc--CHHHHHHH
Confidence 6889994 3322 23445 5676776654 23444444
No 26
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=82.79 E-value=14 Score=37.83 Aligned_cols=146 Identities=12% Similarity=0.058 Sum_probs=90.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC--CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG--VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEI 288 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~--~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el 288 (622)
....+.++.++-++.|.+.|++.|.+.+. ...+... .+..++++.+.+ . ....+. .+-+. .+. +
T Consensus 22 ~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~---~~~~~~p~~~d~~~~~~~~~~-~---~~~~~~--~l~~~--~~~---i 87 (307)
T 1ydo_A 22 PVWIATEDKITWINQLSRTGLSYIEITSF---VHPKWIPALRDAIDVAKGIDR-E---KGVTYA--ALVPN--QRG---L 87 (307)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCSEEEEEEC---SCTTTCGGGTTHHHHHHHSCC-C---TTCEEE--EECCS--HHH---H
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCC---cCcccccccCCHHHHHHHhhh-c---CCCeEE--EEeCC--HHh---H
Confidence 35679999999999999999999988752 1111110 123344443321 1 222332 22232 122 3
Q ss_pred HHHHhCCCCceeecccCCCCCHHHH-HhhcCCC--CHHHHHHHHHHHHHhCCCCEEEEEEEEcC--CC---CCHHHHHHH
Q 007001 289 AEVLRHPCVYSFLHVPVQSGSDAVL-SAMNREY--TLSDFRTVVDTLIELVPGMQIATDIICGF--PG---ETDEDFNQT 360 (622)
Q Consensus 289 ~~l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~~--t~e~~~~~I~~lr~~~pgi~i~td~IvGf--PG---ETeedf~eT 360 (622)
......+ ...+++.+ |.|+.-. +.+++.. ..+.+.+.++.+++. |+.+..+++.-| |. -+.+.+.+.
T Consensus 88 ~~a~~~g--~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~v~~~i~~~~~~~~~~~~~~~~~~~~ 162 (307)
T 1ydo_A 88 ENALEGG--INEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKA--NLTTRAYLSTVFGCPYEKDVPIEQVIRL 162 (307)
T ss_dssp HHHHHHT--CSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT--TCEEEEEEECTTCBTTTBCCCHHHHHHH
T ss_pred HHHHhCC--cCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEEEecCCcCCCCCHHHHHHH
Confidence 3333222 46777766 6666533 4455532 356678889999999 999988888755 32 256788888
Q ss_pred HHHHHhcCCCeEEEE
Q 007001 361 VNLIKEYKFPQVHIS 375 (622)
Q Consensus 361 l~fl~el~~d~v~i~ 375 (622)
++.+.+++.+.+.+.
T Consensus 163 ~~~~~~~Ga~~i~l~ 177 (307)
T 1ydo_A 163 SEALFEFGISELSLG 177 (307)
T ss_dssp HHHHHHHTCSCEEEE
T ss_pred HHHHHhcCCCEEEEc
Confidence 888899999877665
No 27
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=80.47 E-value=15 Score=37.29 Aligned_cols=146 Identities=8% Similarity=-0.025 Sum_probs=85.8
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-.+.+.++.++-++.|.+.|++.|..... .... .=.+.++++.+..+ + ..+.. +-+.. .+.++...+
T Consensus 21 ~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~-~~i~~--l~~~~-~~di~~a~~ 87 (293)
T 3ewb_X 21 GVNFDVKEKIQIALQLEKLGIDVIEAGFP---ISSP----GDFECVKAIAKAIK--H-CSVTG--LARCV-EGDIDRAEE 87 (293)
T ss_dssp --CCCHHHHHHHHHHHHHHTCSEEEEECG---GGCH----HHHHHHHHHHHHCC--S-SEEEE--EEESS-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCc----cHHHHHHHHHHhcC--C-CEEEE--EecCC-HHHHHHHHH
Confidence 35689999999999999999999987642 1111 11345666666543 2 22221 11111 122222333
Q ss_pred HHhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.+...+ ...+++-+ |.||--. +.+++. ...+.+.+.++.+++. |+.+..+...+. --+++.+.+.++.+.++
T Consensus 88 ~~~~ag-~~~v~i~~-~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~~d~~-~~~~~~~~~~~~~~~~~ 162 (293)
T 3ewb_X 88 ALKDAV-SPQIHIFL-ATSDVHMEYKLKMSRAEVLASIKHHISYARQK--FDVVQFSPEDAT-RSDRAFLIEAVQTAIDA 162 (293)
T ss_dssp HHTTCS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHT
T ss_pred HHhhcC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC--CCEEEEEeccCC-CCCHHHHHHHHHHHHHc
Confidence 332333 57777766 6666543 444543 2345567777778887 877765554332 23566778888999999
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 163 G~~~i~l 169 (293)
T 3ewb_X 163 GATVINI 169 (293)
T ss_dssp TCCEEEE
T ss_pred CCCEEEe
Confidence 9887654
No 28
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=79.95 E-value=14 Score=38.23 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=87.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEe-----ecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLS-----SEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~-----g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 286 (622)
...+.++.++-++.|.+.|++.|.+. +.-.+.+|.. ...-.+.++++.+..+ + ..+... +.|..-.. +
T Consensus 25 ~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~-~~~~~e~l~~i~~~~~--~-~~i~~l-~~p~~~~~--~ 97 (345)
T 1nvm_A 25 HQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFG-RHTDLEYIEAVAGEIS--H-AQIATL-LLPGIGSV--H 97 (345)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCC-SSCHHHHHHHHHTTCS--S-SEEEEE-ECBTTBCH--H
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCC-CCCHHHHHHHHHhhCC--C-CEEEEE-ecCCcccH--H
Confidence 45789999999999999999999984 1111222321 1345677888876443 2 222221 14422111 1
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~e 366 (622)
.+...... + ...+++.+ +.++ .+...+.++.+++. |+.+...+... |.-+++.+.+.++.+.+
T Consensus 98 ~i~~a~~a-G-vd~v~I~~-~~s~-----------~~~~~~~i~~ak~~--G~~v~~~~~~a-~~~~~e~~~~ia~~~~~ 160 (345)
T 1nvm_A 98 DLKNAYQA-G-ARVVRVAT-HCTE-----------ADVSKQHIEYARNL--GMDTVGFLMMS-HMIPAEKLAEQGKLMES 160 (345)
T ss_dssp HHHHHHHH-T-CCEEEEEE-ETTC-----------GGGGHHHHHHHHHH--TCEEEEEEEST-TSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-C-cCEEEEEE-eccH-----------HHHHHHHHHHHHHC--CCEEEEEEEeC-CCCCHHHHHHHHHHHHH
Confidence 13323322 2 45566653 3333 24678889999999 99888777655 56778889999999999
Q ss_pred cCCCeEEE
Q 007001 367 YKFPQVHI 374 (622)
Q Consensus 367 l~~d~v~i 374 (622)
.+.+.+.+
T Consensus 161 ~Ga~~i~l 168 (345)
T 1nvm_A 161 YGATCIYM 168 (345)
T ss_dssp HTCSEEEE
T ss_pred CCCCEEEE
Confidence 99886655
No 29
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=73.61 E-value=15 Score=39.20 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=45.5
Q ss_pred cEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeeccccc
Q 007001 419 RVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQVD 482 (622)
Q Consensus 419 ~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~~~~ 482 (622)
+.+++-|+....+| .-+||..+ ..|+|++ .++|+.|.|+|++..+....|++++..++..
T Consensus 15 ~~~~~~i~~l~~~G-~Gv~~~~g-~~vfV~~--alpGe~v~~~i~~~~~~~~~~~~~~i~~~S~ 74 (433)
T 1uwv_A 15 QIITVSVNDLDSFG-QGVARHNG-KTLFIPG--LLPQENAEVTVTEDKKQYARAKVVRRLSDSP 74 (433)
T ss_dssp CCEEEEEEEECTTS-EEEEEETT-EEEEEET--CCTTCEEEEEEEEECSSEEEEEEEEECCCCT
T ss_pred CEEEEEEEEecCCC-ceEEEeCC-EEEEcCC--CCCCCEEEEEEEeecCCceeEEeccccCCCC
Confidence 45678888886655 45788755 4577764 4789999999999999999999987755433
No 30
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=72.02 E-value=6.9 Score=39.38 Aligned_cols=64 Identities=23% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHhc-CCeeeCC--------------CCCCcEEEEec---h-----HHHHHHHHHHhcCC----CcEEEEccccccchh-
Q 007001 82 LSAF-GYALTDN--------------SEEADIWLINT---Q-----SAMDTLIAKCKSAK----KPLVVAGCVPQGSRD- 133 (622)
Q Consensus 82 L~~~-G~~~v~~--------------~~~ADlviINT---~-----~~~~~ii~~~k~~~----~~VVVgGC~aq~~pe- 133 (622)
|+.+ ||++++- ..+||+|.+++ . ..+.++++.+++.+ .+|+|||-.. .++
T Consensus 152 L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~--~~~~ 229 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRI--NNEI 229 (262)
T ss_dssp GGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTC--CHHH
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcC--CHHH
Confidence 8888 9988642 36799999988 2 33456778887766 5789999743 344
Q ss_pred hhcccccEEEcCCc
Q 007001 134 LKELEGVSIVGVQQ 147 (622)
Q Consensus 134 ~~~~~~d~VvG~~~ 147 (622)
..++..|.+.+...
T Consensus 230 a~~iGad~~~~da~ 243 (262)
T 1xrs_B 230 AKELGYDAGFGPGR 243 (262)
T ss_dssp HHTTTCSEEECTTC
T ss_pred HHHcCCeEEECCch
Confidence 34667788887765
No 31
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=70.20 E-value=36 Score=35.11 Aligned_cols=144 Identities=10% Similarity=0.087 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHH-HHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHh---CCCCCceeEEEeecCCcchhHHHHH
Q 007001 212 GSYTVESLVGRVR-TVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAE---LPPDGSTMLRIGMTNPPFILEHLKE 287 (622)
Q Consensus 212 rsr~~e~Iv~Ei~-~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~---l~~~~~~~iri~~~~p~~i~~~l~e 287 (622)
...+.++.++-++ .|.+.|++.|.+.+.-. +.+ -.+.++++.+. +. .....++..+-+.. +.
T Consensus 36 ~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~---~~~----~~~~v~~~~~~~~~~~--~~~~~~i~~l~~~~--~~--- 101 (337)
T 3ble_A 36 VSFSTSEKLNIAKFLLQKLNVDRVEIASARV---SKG----ELETVQKIMEWAATEQ--LTERIEILGFVDGN--KT--- 101 (337)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEETTS---CTT----HHHHHHHHHHHHHHTT--CGGGEEEEEESSTT--HH---
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCCCC---Chh----HHHHHHHHHhhhhhhc--cCCCCeEEEEccch--hh---
Confidence 4589999999999 99999999998864311 111 13455555541 11 11223343333321 12
Q ss_pred HHHHHhCCCCceeecccCCCCCH-HHHHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCC---CCHHHHHHHH
Q 007001 288 IAEVLRHPCVYSFLHVPVQSGSD-AVLSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPG---ETDEDFNQTV 361 (622)
Q Consensus 288 l~~l~~~~~v~~~l~IGlQSgsd-~vLk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPG---ETeedf~eTl 361 (622)
+......+ ...+++-+ +.|+ ...+.+|+. ...+.+.+.++.+++. |+.+..++.. ||. -+.+.+.+.+
T Consensus 102 i~~a~~~g--~~~v~i~~-~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~ 175 (337)
T 3ble_A 102 VDWIKDSG--AKVLNLLT-KGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKS--GLKINVYLED-WSNGFRNSPDYVKSLV 175 (337)
T ss_dssp HHHHHHHT--CCEEEEEE-ECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHT--TCEEEEEEET-HHHHHHHCHHHHHHHH
T ss_pred HHHHHHCC--CCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEE-CCCCCcCCHHHHHHHH
Confidence 32222222 45666655 4555 344566664 2456777888888999 9888877765 222 2466677778
Q ss_pred HHHHhcCCCeEEEE
Q 007001 362 NLIKEYKFPQVHIS 375 (622)
Q Consensus 362 ~fl~el~~d~v~i~ 375 (622)
+.+.+++.+.+.+.
T Consensus 176 ~~~~~~Ga~~i~l~ 189 (337)
T 3ble_A 176 EHLSKEHIERIFLP 189 (337)
T ss_dssp HHHHTSCCSEEEEE
T ss_pred HHHHHcCCCEEEEe
Confidence 88888898876553
No 32
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=69.80 E-value=18 Score=36.39 Aligned_cols=141 Identities=15% Similarity=0.061 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
+..+.+.+++.++.+.+.|..-|.+.++.. ..+....+..+++.+.+.. ...+.+.+.+|..+.. ..+.
T Consensus 29 ~~~~~~~a~~~a~~~v~~GAdiIDIg~~s~---~~eE~~rv~~vi~~l~~~~----~~pisIDT~~~~v~~a----al~a 97 (271)
T 2yci_X 29 LNKDPRPIQEWARRQAEKGAHYLDVNTGPT---ADDPVRVMEWLVKTIQEVV----DLPCCLDSTNPDAIEA----GLKV 97 (271)
T ss_dssp HTTCCHHHHHHHHHHHHTTCSEEEEECCSC---SSCHHHHHHHHHHHHHHHC----CCCEEEECSCHHHHHH----HHHH
T ss_pred hhCCHHHHHHHHHHHHHCCCCEEEEcCCcC---chhHHHHHHHHHHHHHHhC----CCeEEEeCCCHHHHHH----HHHh
Confidence 346779999999999999999888876531 1111235667777776643 3467777666543221 1111
Q ss_pred HhCCCCceeecccCCCCC--HHHHHh------------hc-CC--CC----HHHHHHHHHHHHHhCCCCE---EEEEEEE
Q 007001 292 LRHPCVYSFLHVPVQSGS--DAVLSA------------MN-RE--YT----LSDFRTVVDTLIELVPGMQ---IATDIIC 347 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgs--d~vLk~------------Mn-R~--~t----~e~~~~~I~~lr~~~pgi~---i~td~Iv 347 (622)
.....+.+.++.. . + ++++.. |+ +| .| .+.+.+.++.+.++ |+. +..|=.+
T Consensus 98 ~~Ga~iINdvs~~--~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~--Gi~~~~IilDPg~ 172 (271)
T 2yci_X 98 HRGHAMINSTSAD--Q-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAH--GIPMTELYIDPLI 172 (271)
T ss_dssp CCSCCEEEEECSC--H-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHT--TCCGGGEEEECCC
T ss_pred CCCCCEEEECCCC--c-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEecCC
Confidence 1112233333322 1 2 344433 11 22 23 45667788888888 875 8899999
Q ss_pred cCCCCCHHHHHHHHHHHHhcC
Q 007001 348 GFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 348 GfPGETeedf~eTl~fl~el~ 368 (622)
||.|-+.+.-.++++.++.++
T Consensus 173 gfigk~~~~~~~~l~~l~~~~ 193 (271)
T 2yci_X 173 LPVNVAQEHAVEVLETIRQIK 193 (271)
T ss_dssp CCTTTSTHHHHHHHHHHHHHT
T ss_pred CccccCHHHHHHHHHHHHHHH
Confidence 998888877767777776664
No 33
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=68.91 E-value=29 Score=35.15 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=82.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEH 284 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~------~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~ 284 (622)
-+..+++.+++.++.+++.|..-|-+.++.+. -|.+. ...+..+++.+.+.. ...+.+.+.+|..+..-
T Consensus 32 g~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-Pga~~v~~~eE~~rv~pvi~~l~~~~----~~piSIDT~~~~va~aA 106 (282)
T 1aj0_A 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTR-PGAAEVSVEEELQRVIPVVEAIAQRF----EVWISVDTSKPEVIRES 106 (282)
T ss_dssp CCCTHHHHHHHHHHHHHHHTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHHHHC----CCEEEEECCCHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCcCCHHHHHHHHHHHHHHHHhhc----CCeEEEeCCCHHHHHHH
Confidence 34567999999999999999999988875431 12111 123556666665542 35677776555432211
Q ss_pred HHHHHHHHhCCCCceeecccCCCCCHHHHHh-------------------hcCC--CC------HHHHHHHHHHHHHhCC
Q 007001 285 LKEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-------------------MNRE--YT------LSDFRTVVDTLIELVP 337 (622)
Q Consensus 285 l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~-------------------MnR~--~t------~e~~~~~I~~lr~~~p 337 (622)
+ ..-..+.+.++-+ .+++++.. |... |. .+.+.+.++.+.++
T Consensus 107 l------~aGa~iINdvsg~---~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~-- 175 (282)
T 1aj0_A 107 A------KVGAHIINDIRSL---SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQA-- 175 (282)
T ss_dssp H------HTTCCEEEETTTT---CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHT--
T ss_pred H------HcCCCEEEECCCC---CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHc--
Confidence 1 0111122333222 23333322 2111 11 56788888999988
Q ss_pred CCE---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 338 GMQ---IATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 338 gi~---i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
|+. +..|--+|| +.|.++-.++++.+.++
T Consensus 176 Gi~~~~IilDPg~gf-~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 176 GIAKEKLLLDPGFGF-GKNLSHNYSLLARLAEF 207 (282)
T ss_dssp TCCGGGEEEECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred CCChhhEEEeCCCCc-ccCHHHHHHHHHHHHHH
Confidence 875 888988898 88887666666655544
No 34
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=68.86 E-value=6.8 Score=38.04 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=48.1
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEE--ec-----hHHHHHHHHHHhcC
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLI--NT-----QSAMDTLIAKCKSA 117 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviI--NT-----~~~~~~ii~~~k~~ 117 (622)
.++-+-|.+=-.-..=--.+...|+..||++++- ..++|+|.+ ++ ...+.++++.+++.
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 4555544432222333456778899999998653 356999999 77 44567788888777
Q ss_pred C----CcEEEEccccc
Q 007001 118 K----KPLVVAGCVPQ 129 (622)
Q Consensus 118 ~----~~VVVgGC~aq 129 (622)
+ .+|+|||-..+
T Consensus 173 ~~~~~v~v~vGG~~~~ 188 (215)
T 3ezx_A 173 KLRDSVKCMFGGAPVS 188 (215)
T ss_dssp TCGGGSEEEEESSSCC
T ss_pred CCCCCCEEEEECCCCC
Confidence 5 46999996554
No 35
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=68.81 E-value=30 Score=36.42 Aligned_cols=146 Identities=12% Similarity=0.028 Sum_probs=81.7
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
..+.+.++-++-++.|.+.|++.|..... .... .=.+.++++.+.++ +..-..+.-.+.. .++...+
T Consensus 28 ~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p---~~~~----~d~e~v~~i~~~~~--~~~i~~l~r~~~~----di~~a~~ 94 (370)
T 3rmj_A 28 GAAMTKEEKIRVARQLEKLGVDIIEAGFA---AASP----GDFEAVNAIAKTIT--KSTVCSLSRAIER----DIRQAGE 94 (370)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEEEEG---GGCH----HHHHHHHHHHTTCS--SSEEEEEEESSHH----HHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEeCC---CCCH----HHHHHHHHHHHhCC--CCeEEEEecCCHH----HHHHHHH
Confidence 34789999999999999999999987642 1111 11355666665443 2222222212222 2222222
Q ss_pred HHhCCCCceeecccCCCCCHHH-HHhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAV-LSAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~v-Lk~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
.+...+ ...+++-+ |.|+-- .+.+++. ...+.+.+.++.++++ |..+..+...+. --+.+.+.+.++.+.+.
T Consensus 95 al~~ag-~~~v~if~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~~~~ed~~-r~~~~~~~~~~~~~~~~ 169 (370)
T 3rmj_A 95 AVAPAP-KKRIHTFI-ATSPIHMEYKLKMKPKQVIEAAVKAVKIAREY--TDDVEFSCEDAL-RSEIDFLAEICGAVIEA 169 (370)
T ss_dssp HHTTSS-SEEEEEEE-ECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTT--CSCEEEEEETGG-GSCHHHHHHHHHHHHHH
T ss_pred HHhhCC-CCEEEEEe-cCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCEEEEecCCCC-ccCHHHHHHHHHHHHHc
Confidence 222333 56777766 555543 3555553 2344555566777777 665543333322 23456667778888888
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 170 Ga~~i~l 176 (370)
T 3rmj_A 170 GATTINI 176 (370)
T ss_dssp TCCEEEE
T ss_pred CCCEEEe
Confidence 9886654
No 36
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=68.80 E-value=9.1 Score=43.18 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=48.4
Q ss_pred HHHHHhcCCeeeCC--------------CCCCcEEEEec---h-----HHHHHHHHHHhcCCC----cEEEEccccccch
Q 007001 79 AGQLSAFGYALTDN--------------SEEADIWLINT---Q-----SAMDTLIAKCKSAKK----PLVVAGCVPQGSR 132 (622)
Q Consensus 79 ~~~L~~~G~~~v~~--------------~~~ADlviINT---~-----~~~~~ii~~~k~~~~----~VVVgGC~aq~~p 132 (622)
+..|+..||++++- ..+||+|.+++ . ..+.++++.+++.|. +|+|||-.++ +
T Consensus 627 a~~LE~aGFEVIDLGvdVPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~t--q 704 (763)
T 3kp1_A 627 HGGIEKYGVEVHYLGTSVPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVT--P 704 (763)
T ss_dssp TTCGGGGTCEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCC--H
T ss_pred HHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCC--H
Confidence 45788999998653 45799999997 2 455677888887763 5889997654 4
Q ss_pred hh-hcccccEEEcCCc
Q 007001 133 DL-KELEGVSIVGVQQ 147 (622)
Q Consensus 133 e~-~~~~~d~VvG~~~ 147 (622)
++ .++.+|.+.+.+.
T Consensus 705 d~AkeIGADa~f~DAT 720 (763)
T 3kp1_A 705 EVAVKQGVDAGFGRGS 720 (763)
T ss_dssp HHHHTTTCSEEECTTC
T ss_pred HHHHHcCCcEEECCcc
Confidence 54 4567788887765
No 37
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=65.91 E-value=7.4 Score=41.70 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=41.2
Q ss_pred CCcEEEEEEEEEecCCceEEEeecCCeEEEECCCCCCCCCEEEEEEEEEeeceEEEEEEeecccc
Q 007001 417 EGRVERIWITEIAADGIHLVGHTKGYVQVLVPSTGNMLGTSALVKITSVGRWSVFGEVIKILNQV 481 (622)
Q Consensus 417 vG~~~~Vlve~~~~~~~~~~Grt~~y~~V~v~~~~~~~G~~v~V~I~~~~~~~l~G~~v~~~~~~ 481 (622)
.|+.+++-|+....+| .-+|| .|+|++ .++|+.|+|+|++..+....|++++..++.
T Consensus 17 ~~~~~~~~I~~l~~~G-~Gv~~-----~vfV~~--alPGe~v~~~i~~~k~~~~~a~~~~v~~~S 73 (425)
T 2jjq_A 17 RGSHMRGVIRKLNDDG-FGVLK-----GILVPF--SAPGDEIIVERVERVKKRRVASQWKLVRSS 73 (425)
T ss_dssp ----CEEECCEECTTS-CEEET-----TEEETT--CCTTCEEEEEEEEESSSSEEEEEEEEEECC
T ss_pred CCCEEEEEEEEeccCC-eEEEE-----EEEeCC--CCCCCEEEEEEEEecCCceEEEEcccCCCC
Confidence 3566778888886555 45677 677764 478999999999999999999988765443
No 38
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=64.55 E-value=51 Score=35.30 Aligned_cols=142 Identities=11% Similarity=0.066 Sum_probs=85.1
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
-.+.+.++-++-++.|.+.|+++|.... +... ....+.++.+.+. . ....+ +....+. .+ .+..
T Consensus 55 ~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~---P~as----p~d~~~~~~i~~~-~--~~~~v-~~~~r~~--~~---di~~ 118 (423)
T 3ivs_A 55 NAFFDTEKKIQIAKALDNFGVDYIELTS---PVAS----EQSRQDCEAICKL-G--LKCKI-LTHIRCH--MD---DARV 118 (423)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTS-C--CSSEE-EEEEESC--HH---HHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEEee---cccC----HHHHHHHHHHHhc-C--CCCEE-EEeeccC--hh---hHHH
Confidence 4578999999999999999999999853 2221 1223456666542 2 11121 1112332 11 2333
Q ss_pred HHhCCCCceeecccCCCCCHHHH-HhhcC--CCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVL-SAMNR--EYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vL-k~MnR--~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
....+ .+.+++-+ |.|+--. ..+++ ....+.+.+.++.+++. |+.+..+..-+| .-+++.+.+.++.+.+.
T Consensus 119 A~~aG--~~~V~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~--G~~V~~~~eda~-r~d~~~~~~v~~~~~~~ 192 (423)
T 3ivs_A 119 AVETG--VDGVDVVI-GTSQYLRKYSHGKDMTYIIDSATEVINFVKSK--GIEVRFSSEDSF-RSDLVDLLSLYKAVDKI 192 (423)
T ss_dssp HHHTT--CSEEEEEE-EC-------------CHHHHHHHHHHHHHHTT--TCEEEEEEESGG-GSCHHHHHHHHHHHHHH
T ss_pred HHHcC--CCEEEEEe-eccHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--CCEEEEEEccCc-CCCHHHHHHHHHHHHHh
Confidence 33332 46677665 4444322 22333 23467788899999999 999888887776 45778888899999999
Q ss_pred CCCeEEE
Q 007001 368 KFPQVHI 374 (622)
Q Consensus 368 ~~d~v~i 374 (622)
+.+.+.+
T Consensus 193 Ga~~i~l 199 (423)
T 3ivs_A 193 GVNRVGI 199 (423)
T ss_dssp CCSEEEE
T ss_pred CCCcccc
Confidence 9887554
No 39
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=63.05 E-value=26 Score=36.11 Aligned_cols=144 Identities=11% Similarity=-0.014 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
.+.+.++.++-++.|.+.|++.|.... +.... .+ .+.++++.+.++ +. .+ ..+-+.. .+.++...+.
T Consensus 23 ~~~~~~~Kl~ia~~L~~~Gv~~IE~g~---p~~~~---~d-~e~v~~i~~~~~--~~-~i--~~l~r~~-~~~i~~a~~a 89 (325)
T 3eeg_A 23 CQLNTEEKIIVAKALDELGVDVIEAGF---PVSSP---GD-FNSVVEITKAVT--RP-TI--CALTRAK-EADINIAGEA 89 (325)
T ss_dssp --CCTTHHHHHHHHHHHHTCSEEEEEC---TTSCH---HH-HHHHHHHHHHCC--SS-EE--EEECCSC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCCH---hH-HHHHHHHHHhCC--CC-EE--EEeecCC-HHHHHHHHHh
Confidence 467889999999999999999998863 22211 11 244566666553 22 22 2221111 1222222233
Q ss_pred HhCCCCceeecccCCCCCHHHH-HhhcCC--CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 292 LRHPCVYSFLHVPVQSGSDAVL-SAMNRE--YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgsd~vL-k~MnR~--~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~ 368 (622)
+...+ ...+++-+ |.|+--. +.+|+. ...+.+.+.++.+++. |+.+..+...+.. -+++.+.+.++.+.+.+
T Consensus 90 l~~ag-~~~v~i~~-s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~--g~~v~f~~~d~~~-~~~~~~~~~~~~~~~~G 164 (325)
T 3eeg_A 90 LRFAK-RSRIHTGI-GSSDIHIEHKLRSTRENILEMAVAAVKQAKKV--VHEVEFFCEDAGR-ADQAFLARMVEAVIEAG 164 (325)
T ss_dssp HTTCS-SEEEEEEE-ECSHHHHC----CCCTTGGGTTHHHHHHHHTT--SSEEEEEEETGGG-SCHHHHHHHHHHHHHHT
T ss_pred hcccC-CCEEEEEe-cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHC--CCEEEEEcccccc-chHHHHHHHHHHHHhcC
Confidence 32323 56676655 4555443 445543 4678889999999999 8876544333322 34566667777788888
Q ss_pred CCeEE
Q 007001 369 FPQVH 373 (622)
Q Consensus 369 ~d~v~ 373 (622)
.+.+.
T Consensus 165 ~~~i~ 169 (325)
T 3eeg_A 165 ADVVN 169 (325)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 87554
No 40
>1t2y_A Metallothionein, MT; protein fold, no secondary structural elements, metal binding protein; NMR {Synthetic} SCOP: g.46.1.1
Probab=61.91 E-value=4.7 Score=25.94 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=10.5
Q ss_pred cccccCCCCCCcccC
Q 007001 509 SSACSNEPDPSACGL 523 (622)
Q Consensus 509 ~~~~~~~~~~~~~~~ 523 (622)
.|.||. .++|.|+.
T Consensus 2 ~CgCs~-tgtC~Cg~ 15 (26)
T 1t2y_A 2 DCGCSG-ASSCNCGS 15 (26)
T ss_dssp CCSCSS-TTTCCCSS
T ss_pred CcccCC-CccccCCC
Confidence 577877 78888874
No 41
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=57.62 E-value=74 Score=31.43 Aligned_cols=133 Identities=13% Similarity=0.156 Sum_probs=78.9
Q ss_pred cCCCCHHHHHHHHHHHHHCCCc--EEEEeecCC---CCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~Gvk--eI~L~g~d~---~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 285 (622)
.-+.+...+-++++.+.+.|++ .+-+.+..+ .++| +.+++.|++..+. -...+.+...+|.. ..
T Consensus 34 ilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G-------~~~v~~lr~~~p~-~~ldvHLmv~~p~~---~i 102 (246)
T 3inp_A 34 ILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFG-------PMVLKALRDYGIT-AGMDVHLMVKPVDA---LI 102 (246)
T ss_dssp GGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCC-------HHHHHHHHHHTCC-SCEEEEEECSSCHH---HH
T ss_pred hhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcC-------HHHHHHHHHhCCC-CeEEEEEeeCCHHH---HH
Confidence 4456777888999999888877 556666554 2333 5778888776521 22455565556643 22
Q ss_pred HHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 007001 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365 (622)
Q Consensus 286 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 365 (622)
+.+.+ . + ...+++..|+... ..+.++.+|++ |+.+...+- |+...+.+++.++
T Consensus 103 ~~~~~---a-G-Ad~itvH~Ea~~~--------------~~~~i~~ir~~--G~k~Gvaln---p~Tp~e~l~~~l~--- 155 (246)
T 3inp_A 103 ESFAK---A-G-ATSIVFHPEASEH--------------IDRSLQLIKSF--GIQAGLALN---PATGIDCLKYVES--- 155 (246)
T ss_dssp HHHHH---H-T-CSEEEECGGGCSC--------------HHHHHHHHHTT--TSEEEEEEC---TTCCSGGGTTTGG---
T ss_pred HHHHH---c-C-CCEEEEccccchh--------------HHHHHHHHHHc--CCeEEEEec---CCCCHHHHHHHHh---
Confidence 22222 2 2 5788888887642 46678888998 988766543 4433333332222
Q ss_pred hcCCCeEEEEEeeeCCCCcc
Q 007001 366 EYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 366 el~~d~v~i~~ysP~PGTpa 385 (622)
.+|.+. ..+..||..-
T Consensus 156 --~vD~Vl--vMsV~PGfgG 171 (246)
T 3inp_A 156 --NIDRVL--IMSVNPGFGG 171 (246)
T ss_dssp --GCSEEE--EECSCTTC--
T ss_pred --cCCEEE--EeeecCCCCC
Confidence 356544 4567788744
No 42
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=57.54 E-value=39 Score=34.47 Aligned_cols=139 Identities=14% Similarity=0.221 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC-c--CC---CHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD-I--GV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d-~--~~---~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 286 (622)
..+++.+++.++.+++.|..-|.+.++.+-- |.. . .+ ++..+++.+.+.. ...+.+.+.+|..+..-
T Consensus 59 ~~~~~~a~~~a~~~v~~GAdiIDIGgeStrP-ga~~v~~~eE~~RvvpvI~~l~~~~----~vpiSIDT~~~~V~~aA-- 131 (297)
T 1tx2_A 59 YNEVDAAVRHAKEMRDEGAHIIDIGGESTRP-GFAKVSVEEEIKRVVPMIQAVSKEV----KLPISIDTYKAEVAKQA-- 131 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEESCC-----CCCCCHHHHHHHHHHHHHHHHHHS----CSCEEEECSCHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHhcC----CceEEEeCCCHHHHHHH--
Confidence 4568999999999999999998888754321 211 1 11 2344446665532 34677776665432221
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHhhc-----------CC---C------CHHHHHHHHHHHHHhCCCCE---EEE
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSAMN-----------RE---Y------TLSDFRTVVDTLIELVPGMQ---IAT 343 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~Mn-----------R~---~------t~e~~~~~I~~lr~~~pgi~---i~t 343 (622)
.+. ...+.+.++-+ ..+++++..+. ++ | -.+.+.+.++.+.++ |+. +..
T Consensus 132 --l~a--Ga~iINdvsg~--~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~--GI~~~~Iil 203 (297)
T 1tx2_A 132 --IEA--GAHIINDIWGA--KAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA--GVRDENIIL 203 (297)
T ss_dssp --HHH--TCCEEEETTTT--SSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHT--TCCGGGEEE
T ss_pred --HHc--CCCEEEECCCC--CCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHc--CCChhcEEE
Confidence 111 22233443322 23556654321 11 1 035677788888888 875 888
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 344 DIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 344 d~IvGfPGETeedf~eTl~fl~el 367 (622)
|--+|| +-|.++-.++++.+.++
T Consensus 204 DPg~Gf-gk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 204 DPGIGF-AKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp ECCTTS-SCCHHHHHHHHHTGGGG
T ss_pred eCCCCc-CCCHHHHHHHHHHHHHH
Confidence 988888 88877655666555544
No 43
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=57.42 E-value=27 Score=39.00 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=51.0
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC--------------CCCCcEEEEec-----hHHHHHHHHHHhcCC-
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN--------------SEEADIWLINT-----QSAMDTLIAKCKSAK- 118 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~--------------~~~ADlviINT-----~~~~~~ii~~~k~~~- 118 (622)
.+|-+-|.+=-.-..=...++..|+..||++++- ..++|+|++++ ...+.++++.+++.+
T Consensus 99 ~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g~ 178 (579)
T 3bul_A 99 GKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGF 178 (579)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 4565555443333444567888999999998642 35799999998 455677888887776
Q ss_pred -CcEEEEcccccc
Q 007001 119 -KPLVVAGCVPQG 130 (622)
Q Consensus 119 -~~VVVgGC~aq~ 130 (622)
.+|+|||-..+.
T Consensus 179 ~i~ViVGGa~~~~ 191 (579)
T 3bul_A 179 TIPLLIGGATTSK 191 (579)
T ss_dssp CSCEEEESTTCCH
T ss_pred CCeEEEEccccch
Confidence 589999976554
No 44
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=55.77 E-value=1.4e+02 Score=31.18 Aligned_cols=139 Identities=7% Similarity=0.063 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
.+.+.++.++-++.|.+.|++.|.... +... ....+.++.+.+... . ..+....... .+ ++...
T Consensus 20 ~~~~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~----~~~~~~~~~i~~~~~--~---~~v~~~~r~~-~~---di~~a 83 (382)
T 2ztj_A 20 ANFSTQDKVEIAKALDEFGIEYIEVTT---PVAS----PQSRKDAEVLASLGL--K---AKVVTHIQCR-LD---AAKVA 83 (382)
T ss_dssp CCCCHHHHHHHHHHHHHHTCSEEEECC---TTSC----HHHHHHHHHHHTSCC--S---SEEEEEEESC-HH---HHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCcCEEEEcC---CcCC----HHHHHHHHHHHhcCC--C---cEEEEEcccC-hh---hHHHH
Confidence 468899999999999999999999853 2221 123456666654321 1 2222111111 11 23333
Q ss_pred HhCCCCceeecccCCCCCHHHHHhhcCCCCH----HHHHHHHHHHHHhCCC--CEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 007001 292 LRHPCVYSFLHVPVQSGSDAVLSAMNREYTL----SDFRTVVDTLIELVPG--MQIATDIICGFPGETDEDFNQTVNLIK 365 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~----e~~~~~I~~lr~~~pg--i~i~td~IvGfPGETeedf~eTl~fl~ 365 (622)
...+ ...+++-+ +.|+-..+ +-+.+. +.+.+.++.+++. | +.+..++.-++ --+.+.+.+.++.+.
T Consensus 84 ~~~g--~~~v~i~~-~~s~~~~~--~~~~s~~e~l~~~~~~v~~ak~~--g~~~~v~~~~ed~~-~~~~~~~~~~~~~~~ 155 (382)
T 2ztj_A 84 VETG--VQGIDLLF-GTSKYLRA--PHGRDIPRIIEEAKEVIAYIREA--APHVEVRFSAEDTF-RSEEQDLLAVYEAVA 155 (382)
T ss_dssp HHTT--CSEEEEEE-CC----------CCCHHHHHHHHHHHHHHHHHH--CTTSEEEEEETTTT-TSCHHHHHHHHHHHG
T ss_pred HHcC--CCEEEEEe-ccCHHHHH--HhCCCHHHHHHHHHHHHHHHHHc--CCCEEEEEEEEeCC-CCCHHHHHHHHHHHH
Confidence 3332 45666655 56665444 333444 5578889999999 8 88888887664 556788888889898
Q ss_pred hcCCCeEEEE
Q 007001 366 EYKFPQVHIS 375 (622)
Q Consensus 366 el~~d~v~i~ 375 (622)
+. .+.+.+-
T Consensus 156 ~~-a~~i~l~ 164 (382)
T 2ztj_A 156 PY-VDRVGLA 164 (382)
T ss_dssp GG-CSEEEEE
T ss_pred Hh-cCEEEec
Confidence 88 8766553
No 45
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=55.29 E-value=77 Score=31.91 Aligned_cols=139 Identities=15% Similarity=0.136 Sum_probs=75.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---CcCCC---HHHHHHHHHHhCCCCCceeEEEeecCCcchhHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~---d~~~~---l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 285 (622)
+..+++.+++.++.+++.|..-|-+.++.+. -|. +.... +..+++.+.+. ...+.+.+.+|..+..-+
T Consensus 24 ~~~~~~~a~~~a~~~v~~GAdiIDIGgestr-pga~~v~~~eE~~Rv~pvi~~l~~~-----~~piSIDT~~~~va~aAl 97 (280)
T 1eye_A 24 CYLDLDDAVKHGLAMAAAGAGIVDVGGESSR-PGATRVDPAVETSRVIPVVKELAAQ-----GITVSIDTMRADVARAAL 97 (280)
T ss_dssp CCCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHT-----TCCEEEECSCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCccCC-CCCCCCCHHHHHHHHHHHHHHhhcC-----CCEEEEeCCCHHHHHHHH
Confidence 3468999999999999999999988875432 121 11123 34444454431 345677765554222111
Q ss_pred HHHHHHHhCCCCceeecccCCCCCHHHHHh-------------------hcCC---CC------HHHHHHHHHHHHHhCC
Q 007001 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSA-------------------MNRE---YT------LSDFRTVVDTLIELVP 337 (622)
Q Consensus 286 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~-------------------MnR~---~t------~e~~~~~I~~lr~~~p 337 (622)
..-..+.+.++-+ ..+++++.. |.+. |. .+.+.+.++.+.++
T Consensus 98 ------~aGa~iINdvsg~--~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~-- 167 (280)
T 1eye_A 98 ------QNGAQMVNDVSGG--RADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA-- 167 (280)
T ss_dssp ------HTTCCEEEETTTT--SSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT--
T ss_pred ------HcCCCEEEECCCC--CCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc--
Confidence 0111122222211 123333322 1111 11 56677888888888
Q ss_pred CCE---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 338 GMQ---IATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 338 gi~---i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
|+. +..|=-+|| +.|.++-.++++-+.++
T Consensus 168 Gi~~~~IilDPg~Gf-~k~~~~n~~ll~~l~~~ 199 (280)
T 1eye_A 168 GVDPARLVLDPGLGF-AKTAQHNWAILHALPEL 199 (280)
T ss_dssp TCCGGGEEEECCTTS-SCCHHHHHHHHHTHHHH
T ss_pred CCChhhEEEECCCCc-ccCHHHHHHHHHHHHHh
Confidence 875 888888898 66776666666666554
No 46
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=54.00 E-value=64 Score=32.92 Aligned_cols=125 Identities=11% Similarity=0.135 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEe-e--cCCcc--hhHHHHH
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIG-M--TNPPF--ILEHLKE 287 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~-~--~~p~~--i~~~l~e 287 (622)
.++.+++.+.+..+.+.|++.|..+.+|....+......-.+|++.|.+. +...+... | .||.. ....++.
T Consensus 93 ~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~----~~f~IgvA~yPE~Hp~a~~~~~d~~~ 168 (304)
T 3fst_A 93 DATPDELRTIARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV----ADFDISVAAYPEVHPEAKSAQADLLN 168 (304)
T ss_dssp TSCHHHHHHHHHHHHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH----CCCEEEEEECTTCCTTCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc----CCCeEEEEeCCCcCCCCCCHHHHHHH
Confidence 47889999999999999999998886666544321123457888877654 23344443 1 12321 1112222
Q ss_pred HHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CCCCHHHHHHH
Q 007001 288 IAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGF-PGETDEDFNQT 360 (622)
Q Consensus 288 l~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGf-PGETeedf~eT 360 (622)
|.+-...+ ..++ . -.=-|+.+.|.+.++.+++. |+.+ -+|.|+ |=-+...+...
T Consensus 169 Lk~KvdAG--Adf~-----------i--TQ~ffD~~~~~~f~~~~r~~--Gi~v--PIi~GImPi~s~~~~~~~ 223 (304)
T 3fst_A 169 LKRKVDAG--ANRA-----------I--TQFFFDVESYLRFRDRCVSA--GIDV--EIIPGILPVSNFKQAKKL 223 (304)
T ss_dssp HHHHHHHT--CCEE-----------E--ECCCSCHHHHHHHHHHHHHT--TCCS--CEECEECCCSCHHHHHHH
T ss_pred HHHHHHcC--CCEE-----------E--eCccCCHHHHHHHHHHHHhc--CCCC--cEEEEecccCCHHHHHHH
Confidence 22111111 1221 0 11236788999999999998 7653 577775 44555554443
No 47
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=53.17 E-value=78 Score=26.20 Aligned_cols=92 Identities=8% Similarity=0.069 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHHhcCCeee---CCC---------CCCcEEEEec---hHHHHHHHHHHhcCC--CcE-EEEccccccch
Q 007001 71 NQSDSEYMAGQLSAFGYALT---DNS---------EEADIWLINT---QSAMDTLIAKCKSAK--KPL-VVAGCVPQGSR 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v---~~~---------~~ADlviINT---~~~~~~ii~~~k~~~--~~V-VVgGC~aq~~p 132 (622)
|....+.+...|.+.||.++ .+. ...|+|++.. .....++++++++.+ .+| ++++-......
T Consensus 10 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~ 89 (134)
T 3f6c_A 10 HPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYG 89 (134)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTH
T ss_pred CHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHH
Confidence 45567788889999998865 222 2379999987 333345666666554 344 45553322222
Q ss_pred -hhhccccc-EEEcCCchHHHHHHHHHHhcCC
Q 007001 133 -DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 133 -e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 162 (622)
+.....++ ++.-+-..+.+.+.++....+.
T Consensus 90 ~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 121 (134)
T 3f6c_A 90 KHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 121 (134)
T ss_dssp HHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 22234444 5677767788888888877664
No 48
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=52.79 E-value=14 Score=37.28 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCcEEEEec----hHHHHHHHHHHhcCCCcEEEEccccccchhhhcccccEEEcC--CchHHHHHHH
Q 007001 94 EEADIWLINT----QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV--QQIDRVVEVV 155 (622)
Q Consensus 94 ~~ADlviINT----~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~~~~~d~VvG~--~~~~~l~ell 155 (622)
.+||+|+|+. ...+..+++..+ ..+.+|+.|+-+...|++....++.+-|. .+.+.+.+.|
T Consensus 185 ~~aD~viiTGsTlvN~Ti~~lL~~~~-~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i 251 (270)
T 2h1q_A 185 PECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 251 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred hcCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHH
Confidence 5799999988 556667777765 34589999999999998655555655444 3334444444
No 49
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=51.32 E-value=55 Score=33.33 Aligned_cols=146 Identities=17% Similarity=0.213 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC---CcCCC---HHHHHHHHHHhCCCCCceeEEEeecCCcchhHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR---DIGVN---LPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~---d~~~~---l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 285 (622)
+..+++.+++.++.+++.|..-|-+.++.+.- |. +..+. +..+++.+.+ ....+.+.+.+|..+..-+
T Consensus 47 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-ga~~v~~~eE~~Rv~pvI~~l~~-----~~vpiSIDT~~~~Va~aAl 120 (294)
T 2dqw_A 47 RYLDPERALERAREMVAEGADILDLGAESTRP-GAAPVPVEEEKRRLLPVLEAVLS-----LGVPVSVDTRKPEVAEEAL 120 (294)
T ss_dssp ------CCHHHHHHHHHHTCSEEEEECC------------CCHHHHHHHHHHHHHT-----TCSCEEEECSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-CCCCCCHHHHHHHHHHHHHHHHh-----CCCeEEEECCCHHHHHHHH
Confidence 34578999999999999999988888754321 21 11123 4444455442 1346777766654322111
Q ss_pred ---------------HHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCC------HHHHHHHHHHHHHhCCCCE-EEE
Q 007001 286 ---------------KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYT------LSDFRTVVDTLIELVPGMQ-IAT 343 (622)
Q Consensus 286 ---------------~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t------~e~~~~~I~~lr~~~pgi~-i~t 343 (622)
+++..+.+..+ +..+-+..+-|.++.... +-.|. .+.+.+.++.+.++ |+. +-.
T Consensus 121 ~aGa~iINdVsg~~d~~m~~v~a~~~-~~vVlmh~~eG~p~tm~~-~~~y~dv~~ev~~~l~~~i~~a~~~--Gi~~Iil 196 (294)
T 2dqw_A 121 KLGAHLLNDVTGLRDERMVALAARHG-VAAVVMHMPVPDPATMMA-HARYRDVVAEVKAFLEAQARRALSA--GVPQVVL 196 (294)
T ss_dssp HHTCSEEECSSCSCCHHHHHHHHHHT-CEEEEECCSSSCTTTGGG-GCCCSSHHHHHHHHHHHHHHHHHHT--TCSCEEE
T ss_pred HhCCCEEEECCCCCChHHHHHHHHhC-CCEEEEcCCCCCCccccc-cCccccHHHHHHHHHHHHHHHHHHC--CCCcEEE
Confidence 11222221111 222222222111111100 00122 45677788888888 764 555
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhcC
Q 007001 344 DIICGFPGETDEDFNQTVNLIKEYK 368 (622)
Q Consensus 344 d~IvGfPGETeedf~eTl~fl~el~ 368 (622)
|=-+|| +.|.++-.++++.++++.
T Consensus 197 DPG~Gf-~kt~~~n~~ll~~l~~~~ 220 (294)
T 2dqw_A 197 DPGFGF-GKLLEHNLALLRRLDEIV 220 (294)
T ss_dssp ECCTTS-SCCHHHHHHHHHTHHHHH
T ss_pred cCCCCc-ccCHHHHHHHHHHHHHHh
Confidence 666687 788877777777766553
No 50
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=50.61 E-value=82 Score=25.91 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CC-CCcEEEEec---h-HHHHHHHHHHhcC--CCcEE-EEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SE-EADIWLINT---Q-SAMDTLIAKCKSA--KKPLV-VAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~-~ADlviINT---~-~~~~~ii~~~k~~--~~~VV-VgGC~aq~~ 131 (622)
|....+.+...|...||.+... .. .+|++++.. . ....++++++++. +.+|| +++.. ...
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~ 92 (132)
T 2rdm_A 14 EAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHA-ALE 92 (132)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSC-CTT
T ss_pred cHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCc-cHH
Confidence 4556677888888889876421 22 689999987 3 3344566666543 34554 55432 221
Q ss_pred hhhhcc-cccEEEcCCchHHHHHHHHHHhcCC
Q 007001 132 RDLKEL-EGVSIVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 132 pe~~~~-~~d~VvG~~~~~~l~ell~~~~~g~ 162 (622)
.....+ .++++.-+-..+.+...|+....+.
T Consensus 93 ~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 93 WASNGVPDSIILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHSCTTCEEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCcceEeCCCCHHHHHHHHHHHHhcC
Confidence 111222 2346777777788888888776654
No 51
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=49.69 E-value=57 Score=26.99 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=55.4
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcCC--Cc-E
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSAK--KP-L 121 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~~--~~-V 121 (622)
++|.|+. -+....+.+...|...||.+... ....|+|++.. .....++++++++.+ .+ |
T Consensus 8 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 8 KQILIVE----DEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CeEEEEe----CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4555553 35666778888999999976421 24589999987 323345666666554 34 4
Q ss_pred EEEccccccch-hhhccccc-EEEcCC-chHHHHHHHHHHhcCC
Q 007001 122 VVAGCVPQGSR-DLKELEGV-SIVGVQ-QIDRVVEVVEETLKGH 162 (622)
Q Consensus 122 VVgGC~aq~~p-e~~~~~~d-~VvG~~-~~~~l~ell~~~~~g~ 162 (622)
++++....... +.....++ ++.-+- ..+.+...++....+.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 45554321111 12233444 455555 5677888887766543
No 52
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=49.65 E-value=17 Score=36.70 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCCcEEEEec----hHHHHHHHHHHhcCCCcEEEEccccccchhhhcccccEEEcC--CchHHHHHHH
Q 007001 94 EEADIWLINT----QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELEGVSIVGV--QQIDRVVEVV 155 (622)
Q Consensus 94 ~~ADlviINT----~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~~~~~d~VvG~--~~~~~l~ell 155 (622)
.+||+|+|+. ...+..+++..| ....||+.|+.++..|++.+..++.+-|. .+.+.+.+.+
T Consensus 185 p~~D~viiTgstlvN~Tl~~lL~~~~-~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i 251 (270)
T 3l5o_A 185 PECDYVYITCASVVDKTLPRLLELSR-NARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIV 251 (270)
T ss_dssp GGCSEEEEETHHHHHTCHHHHHHHTT-TSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHH
T ss_pred ccCCEEEEEeehhhcCCHHHHHhhCC-CCCEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHH
Confidence 4699999998 455566777654 33568899999999998655555554443 2334444444
No 53
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=49.23 E-value=57 Score=27.48 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=61.3
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---h--HHHHHHHHHHhcCC--Cc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---Q--SAMDTLIAKCKSAK--KP 120 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~--~~~~~ii~~~k~~~--~~ 120 (622)
.+|.|+. -+....+.+...|...||++... ....|+|++.. . ....++++++++.+ .+
T Consensus 7 ~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ 82 (136)
T 3kto_A 7 PIIYLVD----HQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLP 82 (136)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCC
T ss_pred CeEEEEc----CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCC
Confidence 4555543 35566677888888889976421 24579999987 4 55667888887654 34
Q ss_pred -EEEEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHhcC
Q 007001 121 -LVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 121 -VVVgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 161 (622)
|++++....... +.....++ ++.-+-....+...|+....+
T Consensus 83 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 83 TIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 455654322111 12233444 577777778888888776554
No 54
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=49.01 E-value=91 Score=30.98 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEV 291 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l 291 (622)
+..+++.+++.++.+.+.|..-|.+.++ +-..+..+.+.+++..+.+. ....+.+.+.+|..+..- .+.
T Consensus 20 ~~~~~~~a~~~a~~~v~~GAdiIDIg~g---~~~v~~~ee~~rvv~~i~~~----~~~pisIDT~~~~v~~aA----l~a 88 (262)
T 1f6y_A 20 QERDPAPVQEWARRQEEGGARALDLNVG---PAVQDKVSAMEWLVEVTQEV----SNLTLCLDSTNIKAIEAG----LKK 88 (262)
T ss_dssp HHTCHHHHHHHHHHHHHHTCSEEEEBCC-------CHHHHHHHHHHHHHTT----CCSEEEEECSCHHHHHHH----HHH
T ss_pred hcCCHHHHHHHHHHHHHCCCcEEEECCC---CCCCChHHHHHHHHHHHHHh----CCCeEEEeCCCHHHHHHH----Hhh
Confidence 4578999999999999999988777652 11111112344444444432 245677776665422211 111
Q ss_pred HhCCCCceeecccCCCCCH--HHHHh------------hc-CC--CC----HHHHHHHHHHHHHhCCCC---EEEEEEEE
Q 007001 292 LRHPCVYSFLHVPVQSGSD--AVLSA------------MN-RE--YT----LSDFRTVVDTLIELVPGM---QIATDIIC 347 (622)
Q Consensus 292 ~~~~~v~~~l~IGlQSgsd--~vLk~------------Mn-R~--~t----~e~~~~~I~~lr~~~pgi---~i~td~Iv 347 (622)
.....+.+.++-+ + ++ +++.. |+ ++ .| .+-+.+.++.+.++ |+ .+..|=.+
T Consensus 89 ~~Ga~iINdvs~~-~--d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~--Gi~~~~IilDPg~ 163 (262)
T 1f6y_A 89 CKNRAMINSTNAE-R--EKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEF--GLPMEDLYIDPLI 163 (262)
T ss_dssp CSSCEEEEEECSC-H--HHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHH--TCCGGGEEEECCC
T ss_pred CCCCCEEEECCCC-c--ccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCcccEEEeCCC
Confidence 0011122333222 1 11 22221 11 11 12 24456777888888 87 48888888
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 007001 348 GFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 348 GfPGETeedf~eTl~fl~el 367 (622)
|..|-+.++-.++++.++.+
T Consensus 164 g~~g~~~~~~~~~l~~l~~l 183 (262)
T 1f6y_A 164 LPANVAQDHAPEVLKTLQQI 183 (262)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred CcCCCChHHHHHHHHHHHHH
Confidence 74465555444444444443
No 55
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=48.13 E-value=37 Score=35.01 Aligned_cols=140 Identities=11% Similarity=0.145 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc--C---CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI--G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLK 286 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~--~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~ 286 (622)
+..+++.+++.++.+++.|..-|-+.|+.+- -|... . .++..+++.|.+..+ ...+.+.+.+|..+..-+
T Consensus 60 ~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTr-PG~~v~~~eEl~Rv~pvI~~l~~~~~---~vpISIDT~~~~VaeaAl- 134 (318)
T 2vp8_A 60 ATFSDAAARDAVHRAVADGADVIDVGGVKAG-PGERVDVDTEITRLVPFIEWLRGAYP---DQLISVDTWRAQVAKAAC- 134 (318)
T ss_dssp ----CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHST---TCEEEEECSCHHHHHHHH-
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCHHHHHHHHHHHHHHHHhhCC---CCeEEEeCCCHHHHHHHH-
Confidence 3457899999999999999998888775432 23111 1 134445666665432 456788776664332211
Q ss_pred HHHHHHhCCCCceeecccCCCCCHHHHHh--------------------hcCC--CC----------HHHHHHHHHHHHH
Q 007001 287 EIAEVLRHPCVYSFLHVPVQSGSDAVLSA--------------------MNRE--YT----------LSDFRTVVDTLIE 334 (622)
Q Consensus 287 el~~l~~~~~v~~~l~IGlQSgsd~vLk~--------------------MnR~--~t----------~e~~~~~I~~lr~ 334 (622)
+. -..+.+-++-+ + +++++.. |.+. |. .+.+.+.++.+.+
T Consensus 135 ---~a--Ga~iINDVsg~-~--d~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~ 206 (318)
T 2vp8_A 135 ---AA--GADLINDTWGG-V--DPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVA 206 (318)
T ss_dssp ---HH--TCCEEEETTSS-S--STTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---Hh--CCCEEEECCCC-C--chHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 10 11122322222 1 2333322 2111 10 2456677888888
Q ss_pred hCCCCE---EEEEEEEcCCCCCHHHHHHHHHHHHhc
Q 007001 335 LVPGMQ---IATDIICGFPGETDEDFNQTVNLIKEY 367 (622)
Q Consensus 335 ~~pgi~---i~td~IvGfPGETeedf~eTl~fl~el 367 (622)
+ |+. |..|=-+|| +.|.++-.++++.+.++
T Consensus 207 a--GI~~~~IilDPG~GF-~Kt~~~nl~ll~~l~~l 239 (318)
T 2vp8_A 207 A--GVAREKVLIDPAHDF-GKNTFHGLLLLRHVADL 239 (318)
T ss_dssp T--TCCGGGEEEETTTTC-CTTSHHHHHHHHTHHHH
T ss_pred c--CCChhhEEEcCCCCc-ccCHHHHHHHHHHHHHH
Confidence 8 874 888888898 55666555666655544
No 56
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=48.10 E-value=2.2e+02 Score=30.68 Aligned_cols=137 Identities=7% Similarity=0.088 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCC-----CCCCCcCCCHHHHHHHHHHhCCCCCceeEEEe--------ec-CC
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTG-----AYGRDIGVNLPILLNAIVAELPPDGSTMLRIG--------MT-NP 278 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~-----~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~--------~~-~p 278 (622)
..+.++.++-++.|.+.|+..|...+.-.+ ..+ .+-.+.++.+.+.++ +. .+... +. .|
T Consensus 26 ~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~----~d~~e~l~~i~~~~~--~~-~l~~l~R~~N~~G~~~~~ 98 (464)
T 2nx9_A 26 RLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLG----EDPWQRLRLLKQAMP--NT-PLQMLLRGQNLLGYRHYA 98 (464)
T ss_dssp CCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTC----CCHHHHHHHHHHHCS--SS-CEEEEECGGGTTSSSCCC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhccC----CCHHHHHHHHHHhCC--CC-eEEEEeccccccCccccc
Confidence 467788888888898899999998764221 012 233677788776554 22 22211 11 12
Q ss_pred cchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHH
Q 007001 279 PFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDED 356 (622)
Q Consensus 279 ~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~--IvGfPGETeed 356 (622)
+.+.+. .+......+ ...++|-. +.|+- +.+.++++.+++. |..+..++ ..|.+ -+.+.
T Consensus 99 ddv~~~--~v~~a~~~G--vd~i~if~-~~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~ 159 (464)
T 2nx9_A 99 DDVVDT--FVERAVKNG--MDVFRVFD-AMNDV-----------RNMQQALQAVKKM--GAHAQGTLCYTTSPV-HNLQT 159 (464)
T ss_dssp HHHHHH--HHHHHHHTT--CCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCCTT-CCHHH
T ss_pred chhhHH--HHHHHHhCC--cCEEEEEE-ecCHH-----------HHHHHHHHHHHHC--CCEEEEEEEeeeCCC-CCHHH
Confidence 322221 133333332 34444432 33332 4578899999999 98887776 44544 47899
Q ss_pred HHHHHHHHHhcCCCeEEEE
Q 007001 357 FNQTVNLIKEYKFPQVHIS 375 (622)
Q Consensus 357 f~eTl~fl~el~~d~v~i~ 375 (622)
+.+.++.+.+.+.+.+.+-
T Consensus 160 ~~~~a~~l~~~Gad~I~l~ 178 (464)
T 2nx9_A 160 WVDVAQQLAELGVDSIALK 178 (464)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHCCCCEEEEc
Confidence 9999999999999876654
No 57
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=47.97 E-value=2.3e+02 Score=31.25 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=82.4
Q ss_pred CCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCC-CCcCCCHHHHHHHHHHhCCCCCceeEEEe--------ec-CCcchh
Q 007001 213 SYTVESLVGRVRTVIADGVKEVWLSSEDTGAYG-RDIGVNLPILLNAIVAELPPDGSTMLRIG--------MT-NPPFIL 282 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg-~d~~~~l~eLL~~l~~~l~~~~~~~iri~--------~~-~p~~i~ 282 (622)
..+.++.++-++.|.+.|+..|...+.-.+... +-...+-.+.++.+.+.++ +. .+... +. .|+.+.
T Consensus 43 ~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~--~~-~l~~L~R~~N~~G~~~ypddv~ 119 (539)
T 1rqb_A 43 RMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMP--NS-RLQMLLRGQNLLGYRHYNDEVV 119 (539)
T ss_dssp CCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCT--TS-CEEEEECGGGTTSSSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCC--CC-EEEEEeccccccCcccCccccc
Confidence 467888888899999999999998764221000 0001233577777776554 22 22221 11 122222
Q ss_pred HHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEE--EEcCCCCCHHHHHHH
Q 007001 283 EHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDI--ICGFPGETDEDFNQT 360 (622)
Q Consensus 283 ~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~--IvGfPGETeedf~eT 360 (622)
+. .+......+ ...++|-. +.|+- +.+.+.++.+++. |..+...+ ..|.+ -+.+.+.+.
T Consensus 120 ~~--~ve~a~~aG--vd~vrIf~-s~sd~-----------~ni~~~i~~ak~~--G~~v~~~i~~~~~~~-~~~e~~~~~ 180 (539)
T 1rqb_A 120 DR--FVDKSAENG--MDVFRVFD-AMNDP-----------RNMAHAMAAVKKA--GKHAQGTICYTISPV-HTVEGYVKL 180 (539)
T ss_dssp HH--HHHHHHHTT--CCEEEECC-TTCCT-----------HHHHHHHHHHHHT--TCEEEEEEECCCSTT-CCHHHHHHH
T ss_pred HH--HHHHHHhCC--CCEEEEEE-ehhHH-----------HHHHHHHHHHHHC--CCeEEEEEEeeeCCC-CCHHHHHHH
Confidence 21 133333332 34444432 33332 4577889999998 88776555 44544 478888888
Q ss_pred HHHHHhcCCCeEEEE
Q 007001 361 VNLIKEYKFPQVHIS 375 (622)
Q Consensus 361 l~fl~el~~d~v~i~ 375 (622)
++.+.+.+.+.+.+-
T Consensus 181 a~~l~~~Gad~I~L~ 195 (539)
T 1rqb_A 181 AGQLLDMGADSIALK 195 (539)
T ss_dssp HHHHHHTTCSEEEEE
T ss_pred HHHHHHcCCCEEEeC
Confidence 998999998766553
No 58
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=47.23 E-value=1.4e+02 Score=25.76 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=62.2
Q ss_pred EEecccccchhHHHHHHHHHHhcCCeeeCC-CCCCcEEEEec------hHHHHHHHHHHhcCCCcEEEEcccccc-chhh
Q 007001 63 MKTFGCSHNQSDSEYMAGQLSAFGYALTDN-SEEADIWLINT------QSAMDTLIAKCKSAKKPLVVAGCVPQG-SRDL 134 (622)
Q Consensus 63 i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-~~~ADlviINT------~~~~~~ii~~~k~~~~~VVVgGC~aq~-~pe~ 134 (622)
|+|++=.- +.+.+.++|...||+..+. -..+|++|+=. .+=+...++.+++.|++|+.-=++.+. .|..
T Consensus 8 FISh~~~d---~~~~L~~~l~~~~f~~~~~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~ 84 (111)
T 1eiw_A 8 YITEGEVE---DYRVFLERLEQSGLEWRPATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPE 84 (111)
T ss_dssp EECCCCSH---HHHHHHHHHHHHCSCEEECCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTT
T ss_pred EEecccHh---HHHHHHHHHhCCCCeeecCccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHH
Confidence 34554442 7888999998779987763 46789888755 334456678888899988865555442 2321
Q ss_pred hcccccEEEcCCchHHHHHHHHHHh
Q 007001 135 KELEGVSIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 135 ~~~~~d~VvG~~~~~~l~ell~~~~ 159 (622)
-.-.++.++|-.. +.|.+.|....
T Consensus 85 l~~~a~~iV~Wn~-~~I~~aI~~~~ 108 (111)
T 1eiw_A 85 LEAVSSEVVGWNP-HCIRDALEDAL 108 (111)
T ss_dssp HHHHCSEEECSCH-HHHHHHHHHHH
T ss_pred HHhhCceeccCCH-HHHHHHHHhcc
Confidence 1112678999986 77888887653
No 59
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=47.10 E-value=65 Score=26.62 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcCC----CcEEEEccccccc
Q 007001 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSAK----KPLVVAGCVPQGS 131 (622)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~~----~~VVVgGC~aq~~ 131 (622)
-|....+.+...|.+.||.+... ....|+|++.. .....++++++++.. ++|++..-.....
T Consensus 14 d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~ 93 (132)
T 3lte_A 14 DDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKAK 93 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHH
T ss_pred CCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChHH
Confidence 35666778888888889876422 24579999987 333445667776543 4566654332221
Q ss_pred h-hhhccccc-EEEcCCchHHHHHHHHHHhcCC
Q 007001 132 R-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 132 p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 162 (622)
. +.....++ ++.-+-....+.+.|.....+.
T Consensus 94 ~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 94 LQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp HHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred HHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 1 12233444 4666667777888887766543
No 60
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=46.69 E-value=64 Score=30.49 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=58.3
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEechHHHHHHHHHHhcCCCcEEEEccccccchhhhccc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE 138 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~~~~ 138 (622)
.++.+++|+=..+. .+.+...| |+. -+.+.+++.+.++..++++++.|..+||||-.+....+ ++.
T Consensus 95 ~kIavvg~~~~~~~--~~~~~~ll---~~~-------i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~--~~G 160 (196)
T 2q5c_A 95 NELALIAYKHSIVD--KHEIEAML---GVK-------IKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAI--KQG 160 (196)
T ss_dssp SEEEEEEESSCSSC--HHHHHHHH---TCE-------EEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHH--HTT
T ss_pred CcEEEEeCcchhhH--HHHHHHHh---CCc-------eEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHH--HcC
Confidence 58999999766554 34566666 333 24556677666778899999999999999976644433 333
Q ss_pred ccEEEcCCchHHHHHHHHHHh
Q 007001 139 GVSIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 139 ~d~VvG~~~~~~l~ell~~~~ 159 (622)
...++-....+.+...++++.
T Consensus 161 l~~vli~sg~eSI~~Ai~eA~ 181 (196)
T 2q5c_A 161 LYGETINSGEESLRRAIEEAL 181 (196)
T ss_dssp CEEEECCCCHHHHHHHHHHHH
T ss_pred CcEEEEecCHHHHHHHHHHHH
Confidence 334555555567777777653
No 61
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=45.51 E-value=2.7e+02 Score=28.52 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=80.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCC----c---C---CCHHHHHHHHHHhCCCCCceeEEEeecCCcch
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRD----I---G---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFI 281 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d----~---~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i 281 (622)
+..+++.+++.++.+++.|..-|-+.++-+. -|.+ . . .++..+++.|.+.. ...+.+.+.+|..+
T Consensus 44 ~~~~~~~al~~A~~~v~~GAdIIDIGgeSTr-Pga~~~~~~V~~~eE~~Rv~pvI~~l~~~~----~vpISIDT~~~~Va 118 (314)
T 3tr9_A 44 PHLDLNSALRTAEKMVDEGADILDIGGEATN-PFVDIKTDSPSTQIELDRLLPVIDAIKKRF----PQLISVDTSRPRVM 118 (314)
T ss_dssp BCCSHHHHHHHHHHHHHTTCSEEEEECCCSC-TTC-----CHHHHHHHHHHHHHHHHHHHHC----CSEEEEECSCHHHH
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCcccccCCCCHHHHHHHHHHHHHHHHhhC----CCeEEEeCCCHHHH
Confidence 5678999999999999999998888765332 2222 0 0 12455666665542 35788887776533
Q ss_pred hHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhh-----------cCCC--C-------------HHHHHHHHHHHHHh
Q 007001 282 LEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAM-----------NREY--T-------------LSDFRTVVDTLIEL 335 (622)
Q Consensus 282 ~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~M-----------nR~~--t-------------~e~~~~~I~~lr~~ 335 (622)
..-+ + .-..+.+-++-+ + .++++... .++. | .+.+.+.++.+.++
T Consensus 119 ~aAl----~--aGa~iINDVsg~-~--~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~ 189 (314)
T 3tr9_A 119 REAV----N--TGADMINDQRAL-Q--LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKA 189 (314)
T ss_dssp HHHH----H--HTCCEEEETTTT-C--STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH----H--cCCCEEEECCCC-C--chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHc
Confidence 2211 1 122234444322 1 33444322 1111 1 45567788888888
Q ss_pred CCCC---EEEEEEEEc---CCCCCHHHHHHHHHHHHh
Q 007001 336 VPGM---QIATDIICG---FPGETDEDFNQTVNLIKE 366 (622)
Q Consensus 336 ~pgi---~i~td~IvG---fPGETeedf~eTl~fl~e 366 (622)
|+ .+..|=-+| | |.|.++-.++++-+.+
T Consensus 190 --GI~~~~IilDPG~G~~~F-~Kt~~~n~~lL~~l~~ 223 (314)
T 3tr9_A 190 --GISEDRIIIDPGFGQGNY-GKNVSENFYLLNKLPE 223 (314)
T ss_dssp --TCCGGGEEEECCCCSGGG-CCCHHHHHHHHHTTHH
T ss_pred --CCCHhHEEEeCCCCchhh-cCCHHHHHHHHHHHHH
Confidence 87 477777778 7 7777654455544433
No 62
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=44.80 E-value=92 Score=31.61 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CC---CHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GV---NLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~---~~---~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l 285 (622)
+..+++.+++.++.+++.|..-|-+.++.+. -|.+. .. ++..+++.+.+ ....+.+.+.+|..+..-+
T Consensus 41 ~~~~~~~a~~~a~~~v~~GAdiIDIGgeSTr-Pga~~v~~~eE~~Rv~pvi~~l~~-----~~vpiSIDT~~~~Va~aAl 114 (294)
T 2y5s_A 41 RFLARDDALRRAERMIAEGADLLDIGGESTR-PGAPPVPLDEELARVIPLVEALRP-----LNVPLSIDTYKPAVMRAAL 114 (294)
T ss_dssp ---CTTHHHHHHHHHHHTTCSEEEEESSCCS-TTCCCCCHHHHHHHHHHHHHHHGG-----GCSCEEEECCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCCHHHHHHHHHHHHHHHhh-----CCCeEEEECCCHHHHHHHH
Confidence 3457899999999999999998888875432 22111 11 23333344332 1346777766665332211
Q ss_pred HHHHHHHhCCCCceeecccCCCCCHHHHHhhcC----------------------CCC------HHHHHHHHHHHHHhCC
Q 007001 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR----------------------EYT------LSDFRTVVDTLIELVP 337 (622)
Q Consensus 286 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR----------------------~~t------~e~~~~~I~~lr~~~p 337 (622)
+. -..+.+-++-+ . +++++....+ .|. .+.+.+.++.+.++
T Consensus 115 ----~a--Ga~iINdVsg~--~-d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~-- 183 (294)
T 2y5s_A 115 ----AA--GADLINDIWGF--R-QPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDA-- 183 (294)
T ss_dssp ----HH--TCSEEEETTTT--C-STTHHHHHSSSSCEEEEECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHT--
T ss_pred ----Hc--CCCEEEECCCC--C-chHHHHHHHHhCCCEEEECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHc--
Confidence 11 11122222221 1 3333332111 111 45677788888888
Q ss_pred CCE---EEEEEEEcCCCCCH-HHHHHHHHHHHhcC
Q 007001 338 GMQ---IATDIICGFPGETD-EDFNQTVNLIKEYK 368 (622)
Q Consensus 338 gi~---i~td~IvGfPGETe-edf~eTl~fl~el~ 368 (622)
|+. +..|=-+|| +.|. ++-.++++-+.+++
T Consensus 184 Gi~~~~IilDPG~Gf-~kt~~~~n~~ll~~l~~l~ 217 (294)
T 2y5s_A 184 GVAAERICVDPGFGF-GKAVVDDNYALLAALPDTA 217 (294)
T ss_dssp TCCGGGEEEECCTTS-SSCTTHHHHHHHHTGGGGS
T ss_pred CCChhhEEEeCCCcc-cccchHHHHHHHHHHHHHH
Confidence 875 888988888 6666 65555666665554
No 63
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=44.57 E-value=80 Score=26.28 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=60.9
Q ss_pred CccEEEEEecccccchhHHHHHHHHHHhcCCeeeCC------------CCCCcEEEEec---hHHHHHHHHHHhcC-C--
Q 007001 57 GTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINT---QSAMDTLIAKCKSA-K-- 118 (622)
Q Consensus 57 ~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~------------~~~ADlviINT---~~~~~~ii~~~k~~-~-- 118 (622)
.+.+|.|+. -|....+.+...|...||++... ....|+|++.. .....++++++++. .
T Consensus 6 ~~~~ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3hdv_A 6 ARPLVLVVD----DNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAA 81 (136)
T ss_dssp -CCEEEEEC----SCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTT
T ss_pred CCCeEEEEC----CCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCC
Confidence 355666654 35667788888999999986432 22389999987 33344567777654 2
Q ss_pred CcEE-EEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHhcCC
Q 007001 119 KPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 119 ~~VV-VgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 162 (622)
.+|| +++....... +.....++ ++.-+-....+...|+....|.
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 82 LSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp CEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred CCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 3444 4543221111 12233444 5777778888888888877664
No 64
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=44.14 E-value=1.3e+02 Score=24.52 Aligned_cols=89 Identities=10% Similarity=0.111 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcCC-Cc-EEEEccccccch-h
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSAK-KP-LVVAGCVPQGSR-D 133 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~~-~~-VVVgGC~aq~~p-e 133 (622)
+....+.+...|...||++... ...+|++++.. .....++++++++.. .+ |++++....... .
T Consensus 11 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~ 90 (120)
T 3f6p_A 11 EKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVI 90 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHH
T ss_pred CHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHH
Confidence 3455667777888888876421 24589999987 333445666666532 34 445553322111 1
Q ss_pred hhcccc-cEEEcCCchHHHHHHHHHHh
Q 007001 134 LKELEG-VSIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 134 ~~~~~~-d~VvG~~~~~~l~ell~~~~ 159 (622)
.....+ +++.-+-..+.+...+....
T Consensus 91 ~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 91 GLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred HHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 123334 45777777777777766544
No 65
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=39.42 E-value=2.5e+02 Score=27.09 Aligned_cols=133 Identities=9% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHCCCcE--EEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 213 SYTVESLVGRVRTVIADGVKE--VWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 213 sr~~e~Iv~Ei~~L~~~Gvke--I~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
+.+..++-++++.+ +.|+.. +.+.+.++-. ....+ ..+++.+.+... ....+.+...+|.... +.+.+
T Consensus 9 a~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvp-n~t~G---~~~v~~lr~~~~--~~~dvhLmv~dp~~~i---~~~~~ 78 (231)
T 3ctl_A 9 CMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVP-NLTLS---PFFVSQVKKLAT--KPLDCHLMVTRPQDYI---AQLAR 78 (231)
T ss_dssp GSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSS-CCCBC---HHHHHHHHTTCC--SCEEEEEESSCGGGTH---HHHHH
T ss_pred hCChhhHHHHHHHH-HcCCCEEEEEEEeCccCc-cchhc---HHHHHHHHhccC--CcEEEEEEecCHHHHH---HHHHH
Confidence 34555677889988 888774 5555544221 11111 578888876432 2345666655765332 22322
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d 370 (622)
. + ...+++..|+.++ ...+.++.++++ |+.+...+ -|+...+.+++.++ .+|
T Consensus 79 a---G--Ad~itvh~Ea~~~-------------~~~~~i~~i~~~--G~k~gv~l---np~tp~~~~~~~l~-----~~D 130 (231)
T 3ctl_A 79 A---G--ADFITLHPETING-------------QAFRLIDEIRRH--DMKVGLIL---NPETPVEAMKYYIH-----KAD 130 (231)
T ss_dssp H---T--CSEEEECGGGCTT-------------THHHHHHHHHHT--TCEEEEEE---CTTCCGGGGTTTGG-----GCS
T ss_pred c---C--CCEEEECcccCCc-------------cHHHHHHHHHHc--CCeEEEEE---ECCCcHHHHHHHHh-----cCC
Confidence 1 1 4567676777312 235678889999 98886665 56644444333322 467
Q ss_pred eEEEEEeeeCCCCcc
Q 007001 371 QVHISQFYPRPGTPA 385 (622)
Q Consensus 371 ~v~i~~ysP~PGTpa 385 (622)
.+.+ ++..||+--
T Consensus 131 ~Vlv--msV~pGfgg 143 (231)
T 3ctl_A 131 KITV--MTVDPGFAG 143 (231)
T ss_dssp EEEE--ESSCTTCSS
T ss_pred EEEE--eeeccCcCC
Confidence 5555 566777653
No 66
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=38.92 E-value=1.2e+02 Score=29.32 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCc--EEEEeecCC---CCCCCCcCCCHHHHHHHHHHhC-CCCCceeEEEeecCCcchhHHH
Q 007001 212 GSYTVESLVGRVRTVIADGVK--EVWLSSEDT---GAYGRDIGVNLPILLNAIVAEL-PPDGSTMLRIGMTNPPFILEHL 285 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~Gvk--eI~L~g~d~---~~yg~d~~~~l~eLL~~l~~~l-~~~~~~~iri~~~~p~~i~~~l 285 (622)
-+.+..++-++++.+.+.|.+ ++-+.+..| .++| +++++.|.+.. +. -...+.+...+|... .
T Consensus 12 l~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G-------~~~v~~ir~~~~~~-~~~dvhLmv~~p~~~---i 80 (228)
T 3ovp_A 12 LNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFG-------HPVVESLRKQLGQD-PFFDMHMMVSKPEQW---V 80 (228)
T ss_dssp TTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBC-------HHHHHHHHHHHCSS-SCEEEEEECSCGGGG---H
T ss_pred eeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccC-------HHHHHHHHHhhCCC-CcEEEEEEeCCHHHH---H
Confidence 345666778899999888887 455566554 2333 56778877653 20 123455554566432 2
Q ss_pred HHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHH
Q 007001 286 KEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIK 365 (622)
Q Consensus 286 ~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~ 365 (622)
+.+.+ . + ...+++..|+.+. ..+.++.++++ |+.+...+- |+...+.+++.+
T Consensus 81 ~~~~~---a-G-ad~itvH~Ea~~~--------------~~~~i~~i~~~--G~k~gval~---p~t~~e~l~~~l---- 132 (228)
T 3ovp_A 81 KPMAV---A-G-ANQYTFHLEATEN--------------PGALIKDIREN--GMKVGLAIK---PGTSVEYLAPWA---- 132 (228)
T ss_dssp HHHHH---H-T-CSEEEEEGGGCSC--------------HHHHHHHHHHT--TCEEEEEEC---TTSCGGGTGGGG----
T ss_pred HHHHH---c-C-CCEEEEccCCchh--------------HHHHHHHHHHc--CCCEEEEEc---CCCCHHHHHHHh----
Confidence 22332 2 2 5678887777642 45678888998 887755543 443433333222
Q ss_pred hcCCCeEEEEEeeeCCCCcc
Q 007001 366 EYKFPQVHISQFYPRPGTPA 385 (622)
Q Consensus 366 el~~d~v~i~~ysP~PGTpa 385 (622)
. ..|.+. ..+-.||..-
T Consensus 133 ~-~~D~Vl--~msv~pGf~G 149 (228)
T 3ovp_A 133 N-QIDMAL--VMTVEPGFGG 149 (228)
T ss_dssp G-GCSEEE--EESSCTTTCS
T ss_pred c-cCCeEE--EeeecCCCCC
Confidence 1 256543 4555778744
No 67
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=38.77 E-value=52 Score=27.60 Aligned_cols=100 Identities=11% Similarity=0.120 Sum_probs=58.2
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcC-CeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcCC--Cc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSAK--KP 120 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G-~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~~--~~ 120 (622)
+.+|.|+. -+....+.+...|...| |++... ....|+|++.. .....++++++++.. .+
T Consensus 14 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 89 (135)
T 3snk_A 14 RKQVALFS----SDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVP 89 (135)
T ss_dssp CEEEEEEC----SCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCC
T ss_pred CcEEEEEc----CCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCc
Confidence 55776653 35666788889999999 876421 24579999987 222334556565443 34
Q ss_pred -EEEEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHhcC
Q 007001 121 -LVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 121 -VVVgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 161 (622)
|++++....... +.....++ ++.-+-....+...+.....+
T Consensus 90 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 90 LIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 455664322111 12233444 577777777777777765443
No 68
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=38.76 E-value=22 Score=35.30 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=41.8
Q ss_pred CCcEEEEec----hHHHHHHHHHHhcCCCcEEEEccccccchhhh-cccccEEEcC--CchHHHHHHHH
Q 007001 95 EADIWLINT----QSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLK-ELEGVSIVGV--QQIDRVVEVVE 156 (622)
Q Consensus 95 ~ADlviINT----~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~-~~~~d~VvG~--~~~~~l~ell~ 156 (622)
+||+|+|+. ...+..+++..+. ...+|+.|+.++..|++. ...++.+-|. .+.+.+.+.|.
T Consensus 164 ~~D~v~iTGsTlvN~Ti~~lL~~~~~-~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d~~~~l~~i~ 231 (249)
T 3npg_A 164 EVDGIIASASCIVNGTLDMILDRAKK-AKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLK 231 (249)
T ss_dssp GCSEEEEETTHHHHTCHHHHHHHCSS-CSEEEEESGGGCSCGGGGTTSSCCEEEEEEESCHHHHHHHHH
T ss_pred cCCEEEEEeeeeccCCHHHHHHhCcc-cCeEEEEecCchhhHHHHhhCCccEEEEEEecCHHHHHHHHH
Confidence 699999988 5566677776643 446899999999999854 5566654443 34455555554
No 69
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=38.60 E-value=1.1e+02 Score=32.29 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=17.4
Q ss_pred HHHHHhcCCC---eEEEEEeeeCCCCcc
Q 007001 361 VNLIKEYKFP---QVHISQFYPRPGTPA 385 (622)
Q Consensus 361 l~fl~el~~d---~v~i~~ysP~PGTpa 385 (622)
++-+.+.+++ ....+.|+|+|.|-+
T Consensus 154 l~~l~~~~~n~~~l~acHNFYPr~~TGL 181 (385)
T 1x7f_A 154 LENILSHQANKSALIGCHNFYPQKFTGL 181 (385)
T ss_dssp HHHHTTSSCCGGGEEEECCCBCSTTCSB
T ss_pred HHHHHHcCCChHHeEEeeccCCCCCCCC
Confidence 4445555554 557799999999965
No 70
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=37.97 E-value=80 Score=27.38 Aligned_cols=96 Identities=9% Similarity=0.059 Sum_probs=55.6
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeee-C--CC---------C--CCcEEEEec---hHHHHHHHHHHhcC--CC
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-D--NS---------E--EADIWLINT---QSAMDTLIAKCKSA--KK 119 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v-~--~~---------~--~ADlviINT---~~~~~~ii~~~k~~--~~ 119 (622)
.+|.|+. -|....+.+...|.+.||.++ . +. . ..|+|++.. .....++++++++. +.
T Consensus 37 ~~Ilivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~ 112 (157)
T 3hzh_A 37 FNVLIVD----DSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNA 112 (157)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTC
T ss_pred eEEEEEe----CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCC
Confidence 4676653 467777889999999999865 2 21 1 579999987 22233455555543 33
Q ss_pred cEE-EEccccccch-hhhccccc-EEEcCCchHHHHHHHHHH
Q 007001 120 PLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEET 158 (622)
Q Consensus 120 ~VV-VgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~ 158 (622)
+|| +++-...... +.....++ ++.-+-....+.+.|...
T Consensus 113 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 113 RVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHT
T ss_pred cEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 454 4443211111 12233444 566666767777777654
No 71
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=37.94 E-value=1.4e+02 Score=25.07 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=60.6
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcC-CeeeCC------------C-CCCcEEEEec---hHHHHHHHHHHhcCC--
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFG-YALTDN------------S-EEADIWLINT---QSAMDTLIAKCKSAK-- 118 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G-~~~v~~------------~-~~ADlviINT---~~~~~~ii~~~k~~~-- 118 (622)
..+|.|+. -+....+.+...|...| |.++.. . ...|+|++.. ......+++++++..
T Consensus 20 ~~~ilivd----d~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 95 (146)
T 4dad_A 20 MINILVAS----EDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPG 95 (146)
T ss_dssp GCEEEEEC----SCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTT
T ss_pred CCeEEEEe----CCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCC
Confidence 45676653 35666778889999998 876421 1 5689999987 333445666665543
Q ss_pred CcE-EEEccccccch-hhhcccc-cEEEcCCchHHHHHHHHHHhcCC
Q 007001 119 KPL-VVAGCVPQGSR-DLKELEG-VSIVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 119 ~~V-VVgGC~aq~~p-e~~~~~~-d~VvG~~~~~~l~ell~~~~~g~ 162 (622)
.+| ++++....... +.....+ +++.-+-..+.|...|.....+.
T Consensus 96 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 96 LTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp CEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 344 45553221111 1223334 35777777788888887766543
No 72
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=37.06 E-value=56 Score=33.37 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCC-CC--Cc---CCCHHHHHHHHHHh
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAY-GR--DI---GVNLPILLNAIVAE 262 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~y-g~--d~---~~~l~eLL~~l~~~ 262 (622)
+.++.+++.+.+..+.+.|++.|..+.+|.... |. +. -.+-.+|++.+.+.
T Consensus 81 ~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~ 137 (310)
T 3apt_A 81 AGQSRKEVAEVLHRFVESGVENLLALRGDPPRGERVFRPHPEGFRYAAELVALIRER 137 (310)
T ss_dssp TTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence 347899999999999999999988776665543 30 10 12456777777654
No 73
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=36.64 E-value=98 Score=25.96 Aligned_cols=92 Identities=5% Similarity=0.028 Sum_probs=53.9
Q ss_pred cchhHHHHHHHHHHhcCCeeeCC-------------CCCCcEEEEec---hHHHHHHHHHHhcC--CCcEE-EEcccccc
Q 007001 70 HNQSDSEYMAGQLSAFGYALTDN-------------SEEADIWLINT---QSAMDTLIAKCKSA--KKPLV-VAGCVPQG 130 (622)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~v~~-------------~~~ADlviINT---~~~~~~ii~~~k~~--~~~VV-VgGC~aq~ 130 (622)
-|....+.+...|...||.+... ....|+|++.. .....++++++++. +.+|| +++.....
T Consensus 11 d~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~ 90 (143)
T 3jte_A 11 DESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLD 90 (143)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHH
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHH
Confidence 35666778888888889876421 35789999987 22233455555543 34444 44432111
Q ss_pred ch-hhhccccc-EEEcCCchHHHHHHHHHHhcC
Q 007001 131 SR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 131 ~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 161 (622)
.. +.....++ ++.-+-..+.+...|.....+
T Consensus 91 ~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 91 NAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp HHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 11 12233444 577777777888888766543
No 74
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=36.49 E-value=2.1e+02 Score=30.05 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC---CCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG---VNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~---~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
.++++++++++.+.+.|++.|-+.|.+...+ .+.. ..-.+.++++++.++ ....+++. .|-..-.+...++.+
T Consensus 124 ~~~e~~~~~a~~~~~~G~~~iKl~G~~~~~~-~~~~~~~~~d~e~v~avR~avG--~d~~L~vD-aN~~~~~~~A~~~~~ 199 (405)
T 3rr1_A 124 DRPADVIAGMKALQAGGFDHFKLNGCEEMGI-IDTSRAVDAAVARVAEIRSAFG--NTVEFGLD-FHGRVSAPMAKVLIK 199 (405)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEESCCSSSC-BCSHHHHHHHHHHHHHHHHTTG--GGSEEEEE-CCSCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcccc-cccchhHHHHHHHHHHHHHHhC--CCceEEEE-CCCCCCHHHHHHHHH
Confidence 4789999999999999999999865421111 0100 112567777777664 45566665 333222222223333
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNR 318 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR 318 (622)
.+...+ ..++.=|+-..+-+.++.+++
T Consensus 200 ~L~~~~-i~~iEeP~~~~d~~~~~~l~~ 226 (405)
T 3rr1_A 200 ELEPYR-PLFIEEPVLAEQAETYARLAA 226 (405)
T ss_dssp HHGGGC-CSCEECSSCCSSTHHHHHHHT
T ss_pred HHHhcC-CCEEECCCCcccHHHHHHHHh
Confidence 343333 356666665444444544443
No 75
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=35.53 E-value=1.6e+02 Score=25.06 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=61.7
Q ss_pred CCccEEEEEecccccchhHHHHHHHHHHhcC--Ceee--CC---------CCCCcEEEEec---hHHHHHHHHHHhcCC-
Q 007001 56 PGTETIYMKTFGCSHNQSDSEYMAGQLSAFG--YALT--DN---------SEEADIWLINT---QSAMDTLIAKCKSAK- 118 (622)
Q Consensus 56 ~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G--~~~v--~~---------~~~ADlviINT---~~~~~~ii~~~k~~~- 118 (622)
..|.+|.|+. -+....+.+...|...| |.+. .+ ....|+|++.. .....++++.+++.+
T Consensus 18 ~~m~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 18 GSHMKVLVAE----DQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp --CEEEEEEC----SCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTC
T ss_pred CCccEEEEEc----CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCC
Confidence 3366777764 35666778888888877 5432 22 34589999987 333345666666544
Q ss_pred -CcE-EEEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHhcCCc
Q 007001 119 -KPL-VVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHE 163 (622)
Q Consensus 119 -~~V-VVgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~~ 163 (622)
.+| ++++....... +.....++ ++.-+-..+.+.+.|.....+..
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 344 45553221111 12233444 57777777888888888776643
No 76
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.25 E-value=1.6e+02 Score=24.04 Aligned_cols=89 Identities=13% Similarity=0.126 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC----CCc-EEEEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA----KKP-LVVAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~----~~~-VVVgGC~aq~~ 131 (622)
+....+.+...|...||++... ...+|++++.. .....++++++++. +.+ |+++|......
T Consensus 11 ~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~ 90 (122)
T 3gl9_A 11 SAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEED 90 (122)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHH
Confidence 4455667788888889976431 34589999976 22334566666543 234 45565322111
Q ss_pred hh-hhccccc-EEEcCCchHHHHHHHHHHh
Q 007001 132 RD-LKELEGV-SIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 132 pe-~~~~~~d-~VvG~~~~~~l~ell~~~~ 159 (622)
.. .....++ ++.-+-..+.+...+....
T Consensus 91 ~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 91 ESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp HHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 11 1233444 5777777777777766543
No 77
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=35.16 E-value=2.2e+02 Score=27.00 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=44.8
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEE
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHIS 375 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~ 375 (622)
+..+.+...+ +.-..+.++..+.-+.++++ |+.+.+.-.. + .++.+.+++.++++.+++...+.+.
T Consensus 44 ~~~vEl~~~~--------~~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~-~-~~~~~~~~~~i~~A~~lGa~~v~~~ 109 (257)
T 3lmz_A 44 IHYLCIKDFH--------LPLNSTDEQIRAFHDKCAAH--KVTGYAVGPI-Y-MKSEEEIDRAFDYAKRVGVKLIVGV 109 (257)
T ss_dssp CCEEEECTTT--------SCTTCCHHHHHHHHHHHHHT--TCEEEEEEEE-E-ECSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCEEEEeccc--------CCCCCCHHHHHHHHHHHHHc--CCeEEEEecc-c-cCCHHHHHHHHHHHHHhCCCEEEec
Confidence 5666666542 11234667777777888888 8876543222 2 2788899999999999998888764
No 78
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=34.42 E-value=1.2e+02 Score=26.12 Aligned_cols=92 Identities=14% Similarity=0.072 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC----CCcE-EEEcccccc
Q 007001 70 HNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA----KKPL-VVAGCVPQG 130 (622)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~----~~~V-VVgGC~aq~ 130 (622)
-|....+.+...|...||.+... ....|+|++.. .....++++.+++. +.+| ++++.....
T Consensus 15 d~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~ 94 (154)
T 3gt7_A 15 DSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPR 94 (154)
T ss_dssp SCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHH
T ss_pred CCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChH
Confidence 35667788888898889976421 34589999987 22334566666553 3344 455532211
Q ss_pred ch-hhhccccc-EEEcCCchHHHHHHHHHHhcC
Q 007001 131 SR-DLKELEGV-SIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 131 ~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 161 (622)
.. +.....++ ++.-+-....+...|.....+
T Consensus 95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 95 DVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp HHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 11 12233444 577777777888888776654
No 79
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.39 E-value=1.4e+02 Score=24.31 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC--C--Cc-EEEEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA--K--KP-LVVAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~--~--~~-VVVgGC~aq~~ 131 (622)
|....+.+...|...||.+... ....|+|++.. .....++++++++. + .+ |++++......
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~ 91 (127)
T 3i42_A 12 YQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDL 91 (127)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhH
Confidence 5566778888888889875421 23479999987 33334566666654 2 34 44555433332
Q ss_pred hhhhccccc-EEEcCCchHHHHHHHHHHhc
Q 007001 132 RDLKELEGV-SIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 132 pe~~~~~~d-~VvG~~~~~~l~ell~~~~~ 160 (622)
.......++ ++.-+-....+.+.+.....
T Consensus 92 ~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 92 GKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp CHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred HHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 222222334 57777777777777765543
No 80
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=34.33 E-value=98 Score=27.92 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=44.2
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeC-------CCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE-EEcc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINT----QSAMDTLIAKCKSAKKPLV-VAGC 126 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~-------~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV-VgGC 126 (622)
++|++ +||.....=.+.+...|...|+.... ...+-|++++-| .....+.++.+|++|.+|| +++-
T Consensus 41 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 118 (180)
T 1jeo_A 41 KKIFI--FGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCE 118 (180)
T ss_dssp SSEEE--ECCHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESS
T ss_pred CEEEE--EeecHHHHHHHHHHHHHHHcCCeEEEeCCCccccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 35555 56667777777888888888875431 223457777765 3455677888999997654 6664
No 81
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=33.74 E-value=73 Score=30.97 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=57.5
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEechHHHHHHHHHHhcCCCcEEEEccccccchhhhccc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINTQSAMDTLIAKCKSAKKPLVVAGCVPQGSRDLKELE 138 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe~~~~~ 138 (622)
.+|.+++|+=..+ +.+.+...| |+. -+.+.+++.+.++..++++++.|..+||||-++....+ ++.
T Consensus 107 ~kIavVg~~~~~~--~~~~i~~ll---~~~-------i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~--~~G 172 (225)
T 2pju_A 107 SSIGVVTYQETIP--ALVAFQKTF---NLR-------LDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAE--EAG 172 (225)
T ss_dssp SCEEEEEESSCCH--HHHHHHHHH---TCC-------EEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHHHHH--HTT
T ss_pred CcEEEEeCchhhh--HHHHHHHHh---CCc-------eEEEEeCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHH--HcC
Confidence 5899999966544 345566666 332 34566777777888999999999999999977654443 222
Q ss_pred ccEEEcCCchHHHHHHHHHHh
Q 007001 139 GVSIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 139 ~d~VvG~~~~~~l~ell~~~~ 159 (622)
...++-.. .+.+...++++.
T Consensus 173 l~~vlI~s-~eSI~~Ai~eA~ 192 (225)
T 2pju_A 173 MTGIFIYS-AATVRQAFSDAL 192 (225)
T ss_dssp SEEEESSC-HHHHHHHHHHHH
T ss_pred CcEEEECC-HHHHHHHHHHHH
Confidence 23444444 477888887654
No 82
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=33.62 E-value=97 Score=28.12 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=44.8
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeC-------CCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE-EEcc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD-------NSEEADIWLINT----QSAMDTLIAKCKSAKKPLV-VAGC 126 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~-------~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV-VgGC 126 (622)
++|++ +||.....=...+...|...|+...- ...+-|++|+-+ .....+.++.+|++|.+|| +++-
T Consensus 38 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 38 HQIFT--AGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CeEEE--EecCHHHHHHHHHHHHHHhcCCeEEEeCcccccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 45555 56667777778888888888885431 234458777766 3455677888999997655 6654
No 83
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=33.30 E-value=1.8e+02 Score=23.63 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC--CCcE-EEEccccccch-
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA--KKPL-VVAGCVPQGSR- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~--~~~V-VVgGC~aq~~p- 132 (622)
+....+.+...|...||.+... ....|++++.. .....++++++++. +.+| ++++.......
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 91 (126)
T 1dbw_A 12 EEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAV 91 (126)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHH
T ss_pred CHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHH
Confidence 3445567777788788865321 23579999876 22233556666554 3344 45554321111
Q ss_pred hhhcccc-cEEEcCCchHHHHHHHHHHhc
Q 007001 133 DLKELEG-VSIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 133 e~~~~~~-d~VvG~~~~~~l~ell~~~~~ 160 (622)
+..+..+ +++.-+-....+.+.++....
T Consensus 92 ~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 92 EAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp HHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred HHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 1223334 457777777778888776554
No 84
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=32.12 E-value=2.1e+02 Score=23.79 Aligned_cols=89 Identities=11% Similarity=0.205 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHHhcCCeeeCC------------CCCCcEEEEec---h-HHHHHHHHHHhc-CCCcE-EEEccccccch
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN------------SEEADIWLINT---Q-SAMDTLIAKCKS-AKKPL-VVAGCVPQGSR 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~------------~~~ADlviINT---~-~~~~~ii~~~k~-~~~~V-VVgGC~aq~~p 132 (622)
|....+.+...|...||.+... ....|+|++.. . ....++++++++ .+.+| ++++-......
T Consensus 14 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~ 93 (140)
T 3h5i_A 14 SKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVV 93 (140)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCC
T ss_pred CHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHH
Confidence 5566778888888889876421 24689999987 2 233445555543 34454 45554322221
Q ss_pred -hhhccccc-EEEcCCchHHHHHHHHHHh
Q 007001 133 -DLKELEGV-SIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 133 -e~~~~~~d-~VvG~~~~~~l~ell~~~~ 159 (622)
+.....++ ++.-+-....+.+.|....
T Consensus 94 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 122 (140)
T 3h5i_A 94 EKIRSVTAYGYVMKSATEQVLITIVEMAL 122 (140)
T ss_dssp GGGGGSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 22233444 5667767777777776654
No 85
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=32.09 E-value=96 Score=24.50 Aligned_cols=86 Identities=10% Similarity=0.129 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC----CCc-EEEEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA----KKP-LVVAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~----~~~-VVVgGC~aq~~ 131 (622)
|....+.+...|...||.+... ....|++++.. .....++++.+++. +.+ |++++- ....
T Consensus 10 ~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~-~~~~ 88 (119)
T 2j48_A 10 EDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE-PPVD 88 (119)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS-CCSS
T ss_pred CHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC-CCch
Confidence 4555677888888888875421 12478999987 22233556666543 334 445553 2222
Q ss_pred hhhhcccccE-EEcCCchHHHHHHHHHH
Q 007001 132 RDLKELEGVS-IVGVQQIDRVVEVVEET 158 (622)
Q Consensus 132 pe~~~~~~d~-VvG~~~~~~l~ell~~~ 158 (622)
.......+. +.-+-....+...+...
T Consensus 89 -~~~~~g~~~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 89 -PLLTAQASAILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp -HHHHHHCSEECSSCSTTHHHHHHHHTT
T ss_pred -hhhhcCHHHhccCCCCHHHHHHHHHHH
Confidence 322223343 34444445565555543
No 86
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=31.66 E-value=28 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.6
Q ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHh
Q 007001 586 MGEWGVVDRALLGGMLVSFLIILALLIHVG 615 (622)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (622)
-+-|-.||--.+-=++..|++++|++||+.
T Consensus 7 ~KIWlvvdP~~~L~~l~~~v~vlAllIH~~ 36 (56)
T 1lgh_A 7 YKIWLVINPSTWLPVIWIVATVVAIAVHAA 36 (56)
T ss_dssp GGHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCceeHHHHHHHHHHHHHHHHHH
Confidence 367888887666666777888999999975
No 87
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=31.42 E-value=1.9e+02 Score=23.95 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=58.0
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCC-----------C-CCCcEEEEec---hHHHHHHHHHHhcCC--Cc
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------S-EEADIWLINT---QSAMDTLIAKCKSAK--KP 120 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-----------~-~~ADlviINT---~~~~~~ii~~~k~~~--~~ 120 (622)
..+|.|. --|....+.+...|...||.+... . ...|++++.. .....++++++++.. .+
T Consensus 15 ~~~iliv----dd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ 90 (138)
T 2b4a_A 15 PFRVTLV----EDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPS 90 (138)
T ss_dssp CCEEEEE----CSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCE
T ss_pred CCeEEEE----CCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCC
Confidence 3456554 345666788889999999975321 2 4689999987 223346677777653 34
Q ss_pred -EEEE-ccccccchhhhcccccEEEcCCchHHHHHHHHHHhcC
Q 007001 121 -LVVA-GCVPQGSRDLKELEGVSIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 121 -VVVg-GC~aq~~pe~~~~~~d~VvG~~~~~~l~ell~~~~~g 161 (622)
|+++ +- ..... ...+..+++.-+-....+...+.....+
T Consensus 91 ii~ls~~~-~~~~~-~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 91 VLILTTGR-HELIE-SSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EEEEESCC---CCC-CSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred EEEEECCC-CCHHH-HHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 4555 43 32222 2223223566666777777777765443
No 88
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=31.16 E-value=2.3e+02 Score=29.65 Aligned_cols=114 Identities=20% Similarity=0.280 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCCCceeEEEeecCCc----chhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHH
Q 007001 253 PILLNAIVAELPPDGSTMLRIGMTNPP----FILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTV 328 (622)
Q Consensus 253 ~eLL~~l~~~l~~~~~~~iri~~~~p~----~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~ 328 (622)
.+.|+...+ . |..++..+...|. .+.+.+.++...++.-++--.+ -.|+++|+.++-.+..
T Consensus 20 ~~yi~~a~~-~---Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~-----DIsp~~l~~Lg~s~~d------ 84 (372)
T 2p0o_A 20 IIYIKKMKA-L---GFDGIFTSLHIPEDDTSLYRQRLTDLGAIAKAEKMKIMV-----DISGEALKRAGFSFDE------ 84 (372)
T ss_dssp HHHHHHHHH-T---TCCEEEEEECCC-----CHHHHHHHHHHHHHHHTCEEEE-----EECHHHHHTTTCBTTB------
T ss_pred HHHHHHHHH-C---CCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEE-----ECCHHHHHHcCCCHHH------
Confidence 355666554 3 5556644444343 2334455555555443321112 3477888877655421
Q ss_pred HHHHHHhCCCC-EEEEEEEEcCCCCCHHHH--------------HHHHHHHHhcCCC---eEEEEEeeeCCCCcc
Q 007001 329 VDTLIELVPGM-QIATDIICGFPGETDEDF--------------NQTVNLIKEYKFP---QVHISQFYPRPGTPA 385 (622)
Q Consensus 329 I~~lr~~~pgi-~i~td~IvGfPGETeedf--------------~eTl~fl~el~~d---~v~i~~ysP~PGTpa 385 (622)
+..+++. |+ .++.| .||.++....+ .+-++-+.+.+++ ....+.|+|+|.|-+
T Consensus 85 l~~~~~l--Gi~glRLD--~Gf~~~eia~ls~nlkIeLNASti~~~~l~~l~~~~~n~~~l~a~HNFYPr~~TGL 155 (372)
T 2p0o_A 85 LEPLIEL--GVTGLRMD--YGITIEQMAHASHKIDIGLNASTITLEEVAELKAHQADFSRLEAWHNYYPRPETGI 155 (372)
T ss_dssp CHHHHHH--TCCEEEEC--SSCCHHHHHHHHTTSEEEEETTTCCHHHHHHHHHTTCCGGGEEEECCCCCSTTCSB
T ss_pred HHHHHHc--CCCEEEEc--CCCCHHHHHHHhcCCEEEEECccCCHHHHHHHHHcCCChHHeEEeeccCCCCCCCC
Confidence 2233444 43 23333 34444333332 1234445555554 557899999999965
No 89
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=30.87 E-value=2.1e+02 Score=23.34 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHhcCCeee--CC--------CCCCcEEEEec---hHHHHHHHHHHhcCC--CcE-EEEccccccch--
Q 007001 71 NQSDSEYMAGQLSAFGYALT--DN--------SEEADIWLINT---QSAMDTLIAKCKSAK--KPL-VVAGCVPQGSR-- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v--~~--------~~~ADlviINT---~~~~~~ii~~~k~~~--~~V-VVgGC~aq~~p-- 132 (622)
|....+.+...|...|+.+. ++ ....|+|++.. .....++++++++.+ .+| ++++.......
T Consensus 12 ~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 91 (135)
T 3eqz_A 12 DTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSA 91 (135)
T ss_dssp CHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHH
Confidence 55566778888887776542 11 11279999987 334456677776654 344 45554332111
Q ss_pred h-h---hcccc-cEEEcCCchHHHHHHHHHHhcCC
Q 007001 133 D-L---KELEG-VSIVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 133 e-~---~~~~~-d~VvG~~~~~~l~ell~~~~~g~ 162 (622)
+ . ....+ +++.-+-....+.+.|.....+.
T Consensus 92 ~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 92 ETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp HHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred HHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 1 1 12223 45777778888888888876654
No 90
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=30.58 E-value=1.3e+02 Score=27.14 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=44.2
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeee--C-C----------CCCCcEEEEec----hHHHHHHHHHHhcCCCcE
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT--D-N----------SEEADIWLINT----QSAMDTLIAKCKSAKKPL 121 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v--~-~----------~~~ADlviINT----~~~~~~ii~~~k~~~~~V 121 (622)
++|++ +||.....=.+.+...|...|.... . + ..+-|++|+-+ .....+.++.+|++|.+|
T Consensus 40 ~~I~i--~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~v 117 (187)
T 3sho_A 40 DHVIV--VGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPT 117 (187)
T ss_dssp SEEEE--ECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCE
T ss_pred CEEEE--EecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCE
Confidence 45554 5666677777888888888887642 2 1 23468887766 445567788899989775
Q ss_pred E-EEcc
Q 007001 122 V-VAGC 126 (622)
Q Consensus 122 V-VgGC 126 (622)
| +++-
T Consensus 118 i~IT~~ 123 (187)
T 3sho_A 118 MALTDS 123 (187)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 5 5653
No 91
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=30.25 E-value=1.6e+02 Score=29.22 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=14.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHHh
Q 007001 314 SAMNREYTLSDFRTVVDTLIEL 335 (622)
Q Consensus 314 k~MnR~~t~e~~~~~I~~lr~~ 335 (622)
+.+..|.+.+++.+.++.+|+.
T Consensus 71 ~AL~~G~~~~~~~~~v~~ir~~ 92 (267)
T 3vnd_A 71 RSLAAGTTSSDCFDIITKVRAQ 92 (267)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhc
Confidence 3444667777777777777765
No 92
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=29.94 E-value=2.1e+02 Score=28.12 Aligned_cols=98 Identities=14% Similarity=0.237 Sum_probs=61.3
Q ss_pred eeEEEeecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHH--H--HhhcCCCCHHHHHHHHHHHHHhCCCCEEEEE
Q 007001 269 TMLRIGMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAV--L--SAMNREYTLSDFRTVVDTLIELVPGMQIATD 344 (622)
Q Consensus 269 ~~iri~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~v--L--k~MnR~~t~e~~~~~I~~lr~~~pgi~i~td 344 (622)
..+++. +-|.. ....++.+.++..+.--.||+|+|..+..- + ..+.-+.+.+++.+.++...+.+|+..-..+
T Consensus 28 ~pvT~A-i~P~~--p~~~~~a~~A~~~G~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a~GvnN 104 (245)
T 2nly_A 28 IPVTVA-VMPFL--EHSTKQAEIAQAAGLEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYAVGLNN 104 (245)
T ss_dssp SCEEEE-ECSSS--TTHHHHHHHHHHTTCEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CCeEEE-ECCCC--CCHHHHHHHHHHCCCEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCcEEEec
Confidence 346665 33321 222345555554443458999999987332 1 1123356899999999999999999653333
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhcCC
Q 007001 345 IICGFPGETDEDFNQTVNLIKEYKF 369 (622)
Q Consensus 345 ~IvGfPGETeedf~eTl~fl~el~~ 369 (622)
-|=+-=.++.+-++..++.+++.++
T Consensus 105 HmGS~~T~~~~~m~~vm~~l~~~gL 129 (245)
T 2nly_A 105 HMGSKIVENEKIMRAILEVVKEKNA 129 (245)
T ss_dssp EECTTGGGCHHHHHHHHHHHHHTTC
T ss_pred ccccchhcCHHHHHHHHHHHHHCCC
Confidence 3333235678889999999999874
No 93
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=29.53 E-value=1.9e+02 Score=23.10 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHhcCCeee---CC---------CCCCcEEEEec---hHHHHHHHHHHhcC--CCcE-EEEccccccch
Q 007001 71 NQSDSEYMAGQLSAFGYALT---DN---------SEEADIWLINT---QSAMDTLIAKCKSA--KKPL-VVAGCVPQGSR 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v---~~---------~~~ADlviINT---~~~~~~ii~~~k~~--~~~V-VVgGC~aq~~p 132 (622)
+....+.+...|...||+++ .+ ....|++++.. .....++++++++. +.+| ++++.......
T Consensus 11 ~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~ 90 (120)
T 1tmy_A 11 AAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMV 90 (120)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHH
T ss_pred cHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHH
Confidence 45556777888888899843 22 12479999987 22233456655543 3344 45554321111
Q ss_pred -hhhccccc-EEEcCCchHHHHHHHHHH
Q 007001 133 -DLKELEGV-SIVGVQQIDRVVEVVEET 158 (622)
Q Consensus 133 -e~~~~~~d-~VvG~~~~~~l~ell~~~ 158 (622)
...+..++ ++.-+-....+.+.++..
T Consensus 91 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 91 IEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp HHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 12233343 566666666777666543
No 94
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=28.69 E-value=2.2e+02 Score=22.97 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC--CCc-EEEEccccccch-
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA--KKP-LVVAGCVPQGSR- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~--~~~-VVVgGC~aq~~p- 132 (622)
|....+.+...|...||++... ...+|++++.. .....++++++++. ..+ |++++.......
T Consensus 12 ~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 91 (124)
T 1srr_A 12 QSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQ 91 (124)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHH
Confidence 4455667777888788875321 12479999976 22223455555542 344 445554321111
Q ss_pred hhhcccc-cEEEcCCchHHHHHHHHHHhcC
Q 007001 133 DLKELEG-VSIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 133 e~~~~~~-d~VvG~~~~~~l~ell~~~~~g 161 (622)
+...... +++.-+-..+.+...++....+
T Consensus 92 ~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 92 ESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp HHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred HHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 1122233 4677777777777777765543
No 95
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=28.58 E-value=1.7e+02 Score=31.43 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc---CC---CHHHHHHHHHHhCCCC-CceeEEEeecCCcc
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI---GV---NLPILLNAIVAELPPD-GSTMLRIGMTNPPF 280 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~---~~---~l~eLL~~l~~~l~~~-~~~~iri~~~~p~~ 280 (622)
.+++.+++.++.+++.|+.-|-+.|+-+. -|.+. .+ ++..+++.+.+..+.. ....+.+.+.+|..
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTr-PGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~~~V 281 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTK-PDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRKLEV 281 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCC-C----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCCHHH
Confidence 57889999999999999998888765332 22211 11 2334466665421100 13578888777653
No 96
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.24 E-value=2.5e+02 Score=23.79 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCCccEEEEEecccccchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC--C
Q 007001 55 IPGTETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA--K 118 (622)
Q Consensus 55 ~~~~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~--~ 118 (622)
+..+.+|.|+. -+....+.+...|...||.+... ....|+|++.. .....++++++++. +
T Consensus 11 ~~~~~~ILivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 86 (153)
T 3hv2_A 11 VTRRPEILLVD----SQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPS 86 (153)
T ss_dssp CCSCCEEEEEC----SCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTT
T ss_pred ccCCceEEEEC----CCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCC
Confidence 34456777763 35566778888888889976432 23579999987 22233455555543 3
Q ss_pred CcEE-EEccccccch--hhhccc-cc-EEEcCCchHHHHHHHHHHhc
Q 007001 119 KPLV-VAGCVPQGSR--DLKELE-GV-SIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 119 ~~VV-VgGC~aq~~p--e~~~~~-~d-~VvG~~~~~~l~ell~~~~~ 160 (622)
.+|| +++. ..... +..... ++ ++.-+-....+...|.....
T Consensus 87 ~~ii~~s~~-~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 87 TTRILLTGD-PDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp SEEEEECCC-CCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHH
T ss_pred CeEEEEECC-CCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4555 4442 22111 122334 44 46666677777777776544
No 97
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.31 E-value=1.1e+02 Score=25.58 Aligned_cols=99 Identities=9% Similarity=0.066 Sum_probs=56.5
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhc----CCCc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKS----AKKP 120 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~----~~~~ 120 (622)
.+|.|+ --|....+.+...|...||.+... ....|+|++.. .....++++++++ .+.+
T Consensus 7 ~~iLiv----dd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 7 PRILIC----EDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp SEEEEE----CSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCEEEE----cCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 455554 235666778888898899975321 24579999987 3333456666665 2345
Q ss_pred EE-EEccccccchh--hhccccc-EEEcCCchHHHHHHHHHHhcC
Q 007001 121 LV-VAGCVPQGSRD--LKELEGV-SIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 121 VV-VgGC~aq~~pe--~~~~~~d-~VvG~~~~~~l~ell~~~~~g 161 (622)
|| +++........ .....++ ++.-+-....+...|.....+
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 55 44432111111 1122344 466666777788887776544
No 98
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=27.29 E-value=1.1e+02 Score=28.40 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=44.4
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeee-------CCCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE-EEc
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALT-------DNSEEADIWLINT----QSAMDTLIAKCKSAKKPLV-VAG 125 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v-------~~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV-VgG 125 (622)
++|++ +||.....=.+.+...|...|+... ....+-|++|+-| .....++++.+|+.|.+|| +++
T Consensus 48 ~~I~i--~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~ 124 (200)
T 1vim_A 48 RSIFV--IGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTG 124 (200)
T ss_dssp SCEEE--ECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEES
T ss_pred CEEEE--EEecHHHHHHHHHHHHHHhcCCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 45554 5666777778888888888887542 1233458888766 4456677888998887755 555
No 99
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=27.11 E-value=2.5e+02 Score=23.25 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=51.7
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC----CCcE-EEEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA----KKPL-VVAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~----~~~V-VVgGC~aq~~ 131 (622)
+....+.+...|...||.++.. ....|+|++.. .....++++++++. ..+| ++++.. ...
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~-~~~ 90 (138)
T 3c3m_A 12 SPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKP-LTP 90 (138)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSC-CCH
T ss_pred CHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCC-ChH
Confidence 4555677778888888875421 13479999987 22233556666543 3344 456542 221
Q ss_pred hhhhcc--cc-cEEEcCCchHHHHHHHHHHhcC
Q 007001 132 RDLKEL--EG-VSIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 132 pe~~~~--~~-d~VvG~~~~~~l~ell~~~~~g 161 (622)
...... .+ +++.-+-..+.+...+.....+
T Consensus 91 ~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 91 EEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp HHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 222222 22 4577776777788888776544
No 100
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.08 E-value=1.7e+02 Score=24.00 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=48.8
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC----CCcE-EEEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA----KKPL-VVAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~----~~~V-VVgGC~aq~~ 131 (622)
|....+.+...|. .||.+... ....|+|++.. .....++++++++. +.+| ++++......
T Consensus 13 ~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~ 91 (133)
T 3nhm_A 13 SWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE 91 (133)
T ss_dssp CHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC---
T ss_pred CHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH
Confidence 3444555666665 66665321 13579999987 33334566666653 3344 4555432222
Q ss_pred hhhhccccc-EEEcCCchHHHHHHHHHHhcC
Q 007001 132 RDLKELEGV-SIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 132 pe~~~~~~d-~VvG~~~~~~l~ell~~~~~g 161 (622)
.......++ ++.-+-..+.+.+.|...+.+
T Consensus 92 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 92 GPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp --TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 112233344 577777778888888776644
No 101
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=26.90 E-value=2.1e+02 Score=24.12 Aligned_cols=88 Identities=9% Similarity=0.159 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHhcCC--eeeC--------------------CCCCCcEEEEec---hHHHHHHHHHHhc--C--CCc-
Q 007001 71 NQSDSEYMAGQLSAFGY--ALTD--------------------NSEEADIWLINT---QSAMDTLIAKCKS--A--KKP- 120 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~--~~v~--------------------~~~~ADlviINT---~~~~~~ii~~~k~--~--~~~- 120 (622)
|....+.+...|...|| .+.. .....|+|++.. .....++++++++ . +.+
T Consensus 13 d~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pi 92 (152)
T 3heb_A 13 DLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPV 92 (152)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCE
T ss_pred CHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCE
Confidence 55566778888888888 3321 134689999987 2233456666665 2 334
Q ss_pred EEEEccccccch-hhhccccc-EEEcCCchHHHHHHHHHH
Q 007001 121 LVVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEET 158 (622)
Q Consensus 121 VVVgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~ 158 (622)
|++++....... +.....++ ++.-+-....+.+.|+..
T Consensus 93 i~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 93 VILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHH
Confidence 455654322111 12233444 567777777788887765
No 102
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=26.86 E-value=1.6e+02 Score=25.00 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC--CCcEE-EEccccccch-
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA--KKPLV-VAGCVPQGSR- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~--~~~VV-VgGC~aq~~p- 132 (622)
|....+.+...|...||++... ....|++++.. .....++++.+++. +.+|| +++-......
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~ 91 (155)
T 1qkk_A 12 DRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAV 91 (155)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHH
T ss_pred CHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHH
Confidence 4556678888898899976421 24589999987 22223455555443 34554 5543211111
Q ss_pred hhhccccc-EEEcCCchHHHHHHHHHHhc
Q 007001 133 DLKELEGV-SIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 133 e~~~~~~d-~VvG~~~~~~l~ell~~~~~ 160 (622)
......++ ++.-+-....+...|.....
T Consensus 92 ~~~~~g~~~~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 92 QAIQDGAYDFIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp HHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Confidence 12233444 56667677777777766543
No 103
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=26.57 E-value=2.7e+02 Score=22.93 Aligned_cols=98 Identities=9% Similarity=-0.004 Sum_probs=56.2
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhc--CC--C
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKS--AK--K 119 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~--~~--~ 119 (622)
+.+|.|+. -|....+.+...|...||++... ....|++++.. .....++++++++ .. .
T Consensus 7 ~~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 7 KGDVMIVD----DDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp CCEEEEEC----SCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCeEEEEc----CCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 34555543 45666788889999999976421 23479999987 2233456676765 33 3
Q ss_pred cEE-EEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHh
Q 007001 120 PLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 120 ~VV-VgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~ 159 (622)
+|| +++....... ......++ ++.-+-....+...|....
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~ 125 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFM 125 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHH
Confidence 444 5553222111 12233344 4666666677777776544
No 104
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=26.32 E-value=3.5e+02 Score=26.29 Aligned_cols=116 Identities=10% Similarity=0.113 Sum_probs=66.9
Q ss_pred cCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHH
Q 007001 211 LGSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAE 290 (622)
Q Consensus 211 ~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~ 290 (622)
.|-.++++.++-++.+++.|++-|.++-.+ ..-.+.++++.+.++ + ..+..+++- ..+.. ..
T Consensus 40 ir~~~~~~a~~~a~al~~gGi~~iEvt~~t---------~~a~e~I~~l~~~~~--~-~~iGaGTVl---t~~~a---~~ 101 (232)
T 4e38_A 40 IAIDNAEDIIPLGKVLAENGLPAAEITFRS---------DAAVEAIRLLRQAQP--E-MLIGAGTIL---NGEQA---LA 101 (232)
T ss_dssp ECCSSGGGHHHHHHHHHHTTCCEEEEETTS---------TTHHHHHHHHHHHCT--T-CEEEEECCC---SHHHH---HH
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---------CCHHHHHHHHHHhCC--C-CEEeECCcC---CHHHH---HH
Confidence 355678889999999999999998886321 123688888887765 2 334444321 12222 22
Q ss_pred HHhCCCCceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Q 007001 291 VLRHPCVYSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFP 370 (622)
Q Consensus 291 l~~~~~v~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d 370 (622)
....+ ..+++.|- .+++ .++.++++ |+.+..+ . -|..+.... .+++.+
T Consensus 102 Ai~AG--A~fIvsP~--~~~~----------------vi~~~~~~--gi~~ipG----v--~TptEi~~A----~~~Gad 149 (232)
T 4e38_A 102 AKEAG--ATFVVSPG--FNPN----------------TVRACQEI--GIDIVPG----V--NNPSTVEAA----LEMGLT 149 (232)
T ss_dssp HHHHT--CSEEECSS--CCHH----------------HHHHHHHH--TCEEECE----E--CSHHHHHHH----HHTTCC
T ss_pred HHHcC--CCEEEeCC--CCHH----------------HHHHHHHc--CCCEEcC----C--CCHHHHHHH----HHcCCC
Confidence 22222 56777652 3333 34456666 6554332 2 266665544 456777
Q ss_pred eEEEEE
Q 007001 371 QVHISQ 376 (622)
Q Consensus 371 ~v~i~~ 376 (622)
.+.+|+
T Consensus 150 ~vK~FP 155 (232)
T 4e38_A 150 TLKFFP 155 (232)
T ss_dssp EEEECS
T ss_pred EEEECc
Confidence 777654
No 105
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=26.26 E-value=2.8e+02 Score=28.95 Aligned_cols=45 Identities=7% Similarity=-0.161 Sum_probs=27.9
Q ss_pred hcC-CCCHHHHHHHHHHHHHhCCCCEE-EEEEEEcCCCCCHHHHHHHH
Q 007001 316 MNR-EYTLSDFRTVVDTLIELVPGMQI-ATDIICGFPGETDEDFNQTV 361 (622)
Q Consensus 316 MnR-~~t~e~~~~~I~~lr~~~pgi~i-~td~IvGfPGETeedf~eTl 361 (622)
|+| |.+.+++.++++.+++. |++.+ ...+.+|--..+.+.+.+.+
T Consensus 174 ~sRfG~~~~e~~~l~~~~~~~-~~l~l~Gl~~H~gs~~~~~~~~~~~~ 220 (425)
T 2qgh_A 174 ENKFGVGEKEALEMFLWAKKS-AFLEPVSVHFHIGSQLLDLEPIIEAS 220 (425)
T ss_dssp TSSSSBCHHHHHHHHHHHHHC-SSEEEEEEECCCBSSBCCHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhC-CCccEEEEEEECCCCCCCHHHHHHHH
Confidence 666 57889999999988774 77764 33444453333444444443
No 106
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=26.25 E-value=1.5e+02 Score=26.58 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=43.3
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeC------------CCCCCcEEEEec----hHHHHHHHHHHhcCCCcEE-
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTD------------NSEEADIWLINT----QSAMDTLIAKCKSAKKPLV- 122 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~------------~~~~ADlviINT----~~~~~~ii~~~k~~~~~VV- 122 (622)
+|++. |+.....-.+.+...|...|+.... ...+-|++|+-| .....++++.+|++|.++|
T Consensus 51 ~I~i~--G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~ 128 (183)
T 2xhz_A 51 KVVVM--GMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLIC 128 (183)
T ss_dssp CEEEE--ECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEE--eecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEE
Confidence 67665 5555556678888888888875421 124568888766 4456677888999997654
Q ss_pred EEcc
Q 007001 123 VAGC 126 (622)
Q Consensus 123 VgGC 126 (622)
+++-
T Consensus 129 IT~~ 132 (183)
T 2xhz_A 129 ITGR 132 (183)
T ss_dssp EESC
T ss_pred EECC
Confidence 6653
No 107
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=26.11 E-value=2.8e+02 Score=23.00 Aligned_cols=90 Identities=11% Similarity=0.168 Sum_probs=53.9
Q ss_pred cchhHHHHHHHHHHhcCCe--ee--CC---------CCCCcEEEEec---hHHHHHHHHHHhc--C--CCcE-EEEcccc
Q 007001 70 HNQSDSEYMAGQLSAFGYA--LT--DN---------SEEADIWLINT---QSAMDTLIAKCKS--A--KKPL-VVAGCVP 128 (622)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~~--~v--~~---------~~~ADlviINT---~~~~~~ii~~~k~--~--~~~V-VVgGC~a 128 (622)
-+....+.+...|...||. +. .+ ....|+|++.. .....++++++++ . +.+| ++++...
T Consensus 13 d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 13 DNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCC
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 3566677888899999986 32 11 34589999987 3344567777776 2 2344 4555322
Q ss_pred ccch-hhhccccc-EEEcCC-chHHHHHHHHHHh
Q 007001 129 QGSR-DLKELEGV-SIVGVQ-QIDRVVEVVEETL 159 (622)
Q Consensus 129 q~~p-e~~~~~~d-~VvG~~-~~~~l~ell~~~~ 159 (622)
.... +.....++ ++.-+- ....+.+.|+...
T Consensus 93 ~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 93 DDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp HHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 2111 12233444 566666 7777777776654
No 108
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=25.88 E-value=1.5e+02 Score=28.90 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEE------------cCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCC
Q 007001 321 TLSDFRTVVDTLIELVPGMQIATDIIC------------GFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGT 383 (622)
Q Consensus 321 t~e~~~~~I~~lr~~~pgi~i~td~Iv------------GfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGT 383 (622)
..+.+....+.+++.+|+..+..-|.- +-| .+.+.++-+.+-+.+.+-+.++.|.+|+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~V~~af~~~~i~~~l~~~~~~~P-----~i~~al~~l~~~G~~~ivV~Pl~l~~G~ 93 (269)
T 2xvy_A 24 ARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAP-----SPAEALAGMAEEGFTHVAVQSLHTIPGE 93 (269)
T ss_dssp TTHHHHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHTTCCCC-----CHHHHHHHHHHTTCCEEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHCCCCeEEeehhhHHHHHHHHHcCCCCC-----CHHHHHHHHHHCCCCEEEEEeceeeccH
Confidence 445677788888888898888777774 555 4666788888889999999999987775
No 109
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=25.21 E-value=3.3e+02 Score=27.11 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEeeeCCCCccccCCCCCHHHHHHH
Q 007001 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFYPRPGTPAARMKKVPSAVVKKR 399 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ysP~PGTpa~~~~~v~~~~~k~R 399 (622)
.|.+++...++.+.+..+ +.+..|+=.|| |.+.+++.+|+..+.+.+..-+++=--...+|. .-+|.++..+|
T Consensus 59 vt~~em~~~~~~I~~~~~-~pviaD~d~Gy-g~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k-----~l~~~~e~~~~ 131 (275)
T 2ze3_A 59 LTRDEMGREVEAIVRAVA-IPVNADIEAGY-GHAPEDVRRTVEHFAALGVAGVNLEDATGLTPT-----ELYDLDSQLRR 131 (275)
T ss_dssp SCHHHHHHHHHHHHHHCS-SCEEEECTTCS-SSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSS-----CBCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcC-CCEEeecCCCC-CCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCC-----ccCCHHHHHHH
Confidence 688999999999998865 68999999997 789999999999888999988888443322332 24677777777
Q ss_pred HHHHHHHHH
Q 007001 400 SRELTSVFE 408 (622)
Q Consensus 400 ~~~L~~l~~ 408 (622)
.+.+.+...
T Consensus 132 I~aa~~a~~ 140 (275)
T 2ze3_A 132 IEAARAAID 140 (275)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 776666654
No 110
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=24.96 E-value=4.1e+02 Score=27.60 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCC--C---------cC---------CCHHHHHHHHHHhCCCCCceeEEE
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGR--D---------IG---------VNLPILLNAIVAELPPDGSTMLRI 273 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~--d---------~~---------~~l~eLL~~l~~~l~~~~~~~iri 273 (622)
.++++++++++.+++.|++.+-+=-. .++. + .+ ....+.++++++.++ ....+++
T Consensus 132 ~~~e~~~~~a~~~~~~G~~~~K~KvG---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G--~d~~l~v 206 (401)
T 3sbf_A 132 DTMEGIYDLVEGFLEKGYKHIRCQLG---FYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYG--NQFHILH 206 (401)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEES---CCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHT--TSSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeec---cCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcC--CCCEEEE
Confidence 47899999999999999998876311 1110 0 00 122566777877765 4566777
Q ss_pred eecCCcchhHHHHHHHHHHhCCCCceeecccCCCCCHHHHHhhcC
Q 007001 274 GMTNPPFILEHLKEIAEVLRHPCVYSFLHVPVQSGSDAVLSAMNR 318 (622)
Q Consensus 274 ~~~~p~~i~~~l~el~~l~~~~~v~~~l~IGlQSgsd~vLk~MnR 318 (622)
. .|-..-.+...++.+.+...+ ..++.=|+...+-.-++.+++
T Consensus 207 D-an~~~~~~~A~~~~~~L~~~~-i~~iEqP~~~~~~~~~~~l~~ 249 (401)
T 3sbf_A 207 D-VHERLFPNQAIQFAKEVEQYK-PYFIEDILPPNQTEWLDNIRS 249 (401)
T ss_dssp E-CTTCSCHHHHHHHHHHHGGGC-CSCEECSSCTTCGGGHHHHHT
T ss_pred E-CCCCCCHHHHHHHHHHHHhcC-CCEEECCCChhHHHHHHHHHh
Confidence 6 333222222223433343333 456766665555555555544
No 111
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=24.90 E-value=3.1e+02 Score=28.63 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=24.8
Q ss_pred eecccCCCCCH-HHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEEE
Q 007001 300 FLHVPVQSGSD-AVLSAMNR-EYTLSDFRTVVDTLIELVPGMQIA 342 (622)
Q Consensus 300 ~l~IGlQSgsd-~vLk~MnR-~~t~e~~~~~I~~lr~~~pgi~i~ 342 (622)
.++|-+.++.+ .....|+| |.+.+++.++++.+++. ++.+.
T Consensus 167 ~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~~~--~l~l~ 209 (419)
T 2plj_A 167 ELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAKEW--NIRIK 209 (419)
T ss_dssp EEEEEBCC---------CCCSCBCHHHHHHHHHHHHHT--TCEEE
T ss_pred CEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHHhC--CCcEE
Confidence 45555555432 12334787 67889999999999886 87653
No 112
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.78 E-value=1.7e+02 Score=24.82 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=59.8
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHhcCCe-e---eCC---------CCCCcEEEEec---hHHHHHHHHHHhcCC--C
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSAFGYA-L---TDN---------SEEADIWLINT---QSAMDTLIAKCKSAK--K 119 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~-~---v~~---------~~~ADlviINT---~~~~~~ii~~~k~~~--~ 119 (622)
..+|.|+. -|....+.+...|...|+. . +.+ ....|+|++.. .....++++.+++.+ .
T Consensus 15 ~~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 90 (152)
T 3eul_A 15 KVRVVVGD----DHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPT 90 (152)
T ss_dssp CEEEEEEC----SSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSC
T ss_pred eEEEEEEc----CCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 45666653 3566677888889888853 2 222 23479999987 333445666666554 3
Q ss_pred cEE-EEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHhcCCc
Q 007001 120 PLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGHE 163 (622)
Q Consensus 120 ~VV-VgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~~ 163 (622)
+|| +++....... +.....++ ++.-+-..+.+.+.|.....+..
T Consensus 91 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 91 RVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred eEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 454 4443211111 12233444 57777777888888888776643
No 113
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=24.61 E-value=4.3e+02 Score=25.65 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcch--hHHHHHHHHHH
Q 007001 215 TVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFI--LEHLKEIAEVL 292 (622)
Q Consensus 215 ~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i--~~~l~el~~l~ 292 (622)
..+.+.++|+.+.+.|+..|+|.--+ .-|. .+ .+.+++|.+.. +...+.|...- +.+ .+..+.+..+.
T Consensus 74 E~~~M~~Di~~~~~~GadGvV~G~Lt--~dg~---iD-~~~~~~Li~~a---~~~~vTFHRAF-D~~~~~d~~~ale~L~ 143 (224)
T 2bdq_A 74 ELRIMEEDILRAVELESDALVLGILT--SNNH---ID-TEAIEQLLPAT---QGLPLVFHMAF-DVIPKSDQKKSIDQLV 143 (224)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC--TTSS---BC-HHHHHHHHHHH---TTCCEEECGGG-GGSCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeEC--CCCC---cC-HHHHHHHHHHh---CCCeEEEECch-hccCCcCHHHHHHHHH
Confidence 45677888999999999999986432 2121 12 34444444432 22345554221 112 22233344444
Q ss_pred hCCCCceee-cccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCe
Q 007001 293 RHPCVYSFL-HVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQ 371 (622)
Q Consensus 293 ~~~~v~~~l-~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~ 371 (622)
.. + +.++ .=|-+.. . +..+-...++.+.+...+ . ..+|.|- |=|.+.+.+ ++++.++..
T Consensus 144 ~l-G-v~rILTSG~~~~-~----------~a~~g~~~L~~Lv~~a~~-r--i~Im~Gg-GV~~~Ni~~---l~~~tGv~e 203 (224)
T 2bdq_A 144 AL-G-FTRILLHGSSNG-E----------PIIENIKHIKALVEYANN-R--IEIMVGG-GVTAENYQY---ICQETGVKQ 203 (224)
T ss_dssp HT-T-CCEEEECSCSSC-C----------CGGGGHHHHHHHHHHHTT-S--SEEEECS-SCCTTTHHH---HHHHHTCCE
T ss_pred Hc-C-CCEEECCCCCCC-C----------cHHHHHHHHHHHHHhhCC-C--eEEEeCC-CCCHHHHHH---HHHhhCCCE
Confidence 44 3 4444 3333322 0 122222333333332112 1 2578874 767766654 455679999
Q ss_pred EEEEEeeeCCCCcccc
Q 007001 372 VHISQFYPRPGTPAAR 387 (622)
Q Consensus 372 v~i~~ysP~PGTpa~~ 387 (622)
+|.....-.||.|+..
T Consensus 204 ~H~s~i~~~~~~~~~~ 219 (224)
T 2bdq_A 204 AHGTRITQMAGDPLEH 219 (224)
T ss_dssp EEETTCC---------
T ss_pred EccccccCCCCCcchh
Confidence 9998888899998754
No 114
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=24.60 E-value=4.4e+02 Score=26.75 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCc------CCCHHHHHHHHHHhCCCCCceeEEEeecCCc
Q 007001 212 GSYTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDI------GVNLPILLNAIVAELPPDGSTMLRIGMTNPP 279 (622)
Q Consensus 212 rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~------~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~ 279 (622)
+..+++.+++.++.+++.|..-|-+.++-+. -|.+. -.++..+++.|.+.. ...+.+.+.+|.
T Consensus 28 ~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTr-PGa~~v~~~eE~~Rv~pvI~~l~~~~----~vpiSIDT~~~~ 96 (314)
T 2vef_A 28 QFFALEQALQQARKLIAEGASMLDIGGESTR-PGSSYVEIEEEIQRVVPVIKAIRKES----DVLISIDTWKSQ 96 (314)
T ss_dssp --CHHHHHHHHHHHHHHTTCSEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHC----CCEEEEECSCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCC-CCCCCCCHHHHHHHHHHHHHHHHhhC----CceEEEeCCCHH
Confidence 3457999999999999999998888775432 22210 124556666666542 356777766654
No 115
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=24.22 E-value=70 Score=29.15 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=36.0
Q ss_pred ccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec-hHHHHHHHHHHhcC-CCcEEEEcc
Q 007001 69 SHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT-QSAMDTLIAKCKSA-KKPLVVAGC 126 (622)
Q Consensus 69 ~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT-~~~~~~ii~~~k~~-~~~VVVgGC 126 (622)
.+|.+|.......+... ...|.++|-| +..+..++++++++ |++|++-|.
T Consensus 90 ~k~~~Dv~laiD~~~~a--------~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~ 141 (165)
T 2qip_A 90 AKGDWDVGITLDAIEIA--------PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGV 141 (165)
T ss_dssp CSCCCHHHHHHHHHHHG--------GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEEC
T ss_pred cCCCccHHHHHHHHHhh--------ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeC
Confidence 57788887777766542 2356666555 77777889999996 998887774
No 116
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=24.17 E-value=2.8e+02 Score=28.26 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHh
Q 007001 214 YTVESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLR 293 (622)
Q Consensus 214 r~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~ 293 (622)
.+++++.++++.+.+.|++.+-+=- |.+. ..-.+.++++++.++ ....+++. .|-..-.+...++.+.+.
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~------g~~~-~~d~~~v~avR~a~g--~~~~l~vD-an~~~~~~~a~~~~~~L~ 207 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKV------GTGI-EADIARVKAIREAVG--FDIKLRLD-ANQAWTPKDAVKAIQALA 207 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEC------CSCH-HHHHHHHHHHHHHHC--TTSEEEEE-CTTCSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEe------CCCH-HHHHHHHHHHHHHcC--CCCeEEEE-CCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999887641 1111 112567778877665 45567765 332221222223333333
Q ss_pred CCCCceeecccCCCCCHHHH
Q 007001 294 HPCVYSFLHVPVQSGSDAVL 313 (622)
Q Consensus 294 ~~~v~~~l~IGlQSgsd~vL 313 (622)
..+ ..++.=|+...+-+-+
T Consensus 208 ~~~-i~~iEqP~~~~d~~~~ 226 (354)
T 3jva_A 208 DYQ-IELVEQPVKRRDLEGL 226 (354)
T ss_dssp TSC-EEEEECCSCTTCHHHH
T ss_pred hcC-CCEEECCCChhhHHHH
Confidence 323 4566655544443333
No 117
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=23.99 E-value=3.4e+02 Score=25.62 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCC
Q 007001 218 SLVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 297 (622)
Q Consensus 218 ~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 297 (622)
+.++.++.+.+.|+..|.+.+.|-...+. ..+ ++++++.+... ..-+.-+.++. .+ .+..++..+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~---~~~-~~i~~i~~~~~---ipv~v~ggI~~---~~---~~~~~l~~G-- 97 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTG---DNR-ALIAEVAQAMD---IKVELSGGIRD---DD---TLAAALATG-- 97 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC---CCH-HHHHHHHHHCS---SEEEEESSCCS---HH---HHHHHHHTT--
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCC---ChH-HHHHHHHHhcC---CcEEEECCcCC---HH---HHHHHHHcC--
Confidence 44555677778999999998644322222 345 88888887542 22222222221 11 233333333
Q ss_pred ceeecccCCCCCHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCCCCHHHHHHHHHHHHhcCCCe
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYTLSDFRTVVDTLIELVPGMQIATDIIC------GFPGETDEDFNQTVNLIKEYKFPQ 371 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t~e~~~~~I~~lr~~~pgi~i~td~Iv------GfPGETeedf~eTl~fl~el~~d~ 371 (622)
+..+++|.++..+ .+.+.+.++.+. . .+.+..|.-. |....+. +..+.++.+.+.+++.
T Consensus 98 ad~V~lg~~~l~~-----------p~~~~~~~~~~g-~--~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~ 162 (244)
T 1vzw_A 98 CTRVNLGTAALET-----------PEWVAKVIAEHG-D--KIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCAR 162 (244)
T ss_dssp CSEEEECHHHHHC-----------HHHHHHHHHHHG-G--GEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCC
T ss_pred CCEEEECchHhhC-----------HHHHHHHHHHcC-C--cEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCE
Confidence 6788888665322 223333333332 1 2344455431 2211222 4445566677788988
Q ss_pred EEEEEeee
Q 007001 372 VHISQFYP 379 (622)
Q Consensus 372 v~i~~ysP 379 (622)
+.+....+
T Consensus 163 i~~~~~~~ 170 (244)
T 1vzw_A 163 YVVTDIAK 170 (244)
T ss_dssp EEEEEC--
T ss_pred EEEeccCc
Confidence 87765543
No 118
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.99 E-value=2.8e+02 Score=22.23 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC----CCcE-EEEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA----KKPL-VVAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~----~~~V-VVgGC~aq~~ 131 (622)
+....+.+...|...||.+... ....|++++.. .....++++++++. +.+| ++++......
T Consensus 11 ~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~ 90 (127)
T 2jba_A 11 EAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEED 90 (127)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHH
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHH
Confidence 3455677888888889875421 23579999987 22234566777653 3354 4555321111
Q ss_pred h-hhhcccc-cEEEcCCchHHHHHHHHHHhc
Q 007001 132 R-DLKELEG-VSIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 132 p-e~~~~~~-d~VvG~~~~~~l~ell~~~~~ 160 (622)
. +..+..+ +++..+-..+.+.+.+.....
T Consensus 91 ~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 91 RVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp HHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 1 1112233 357777777777777776543
No 119
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=23.96 E-value=3e+02 Score=22.47 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcCC--Cc-EEEEccccccch-
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSAK--KP-LVVAGCVPQGSR- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~~--~~-VVVgGC~aq~~p- 132 (622)
|....+.+...|...||.+... ....|++++.. .....++++++++.. .+ |++++.......
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 91 (136)
T 1mvo_A 12 EESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKV 91 (136)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 4555667778888888875321 12479999987 222335666666543 34 455654322222
Q ss_pred hhhcccc-cEEEcCCchHHHHHHHHHHhcC
Q 007001 133 DLKELEG-VSIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 133 e~~~~~~-d~VvG~~~~~~l~ell~~~~~g 161 (622)
......+ +++.-+-....+...+.....+
T Consensus 92 ~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 92 LGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp HHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 1223344 4577777777788888766544
No 120
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=23.83 E-value=2.3e+02 Score=23.56 Aligned_cols=90 Identities=10% Similarity=0.121 Sum_probs=52.2
Q ss_pred cchhHHHHHHHHHHhc-CCeeeC---C---------CCCCcEEEEec---hHHHHHHHHHHhcCC--CcEE-EEcccccc
Q 007001 70 HNQSDSEYMAGQLSAF-GYALTD---N---------SEEADIWLINT---QSAMDTLIAKCKSAK--KPLV-VAGCVPQG 130 (622)
Q Consensus 70 ~N~~Dse~m~~~L~~~-G~~~v~---~---------~~~ADlviINT---~~~~~~ii~~~k~~~--~~VV-VgGC~aq~ 130 (622)
-|....+.+...|... ||..+. + ....|+|++.. .....++++++++.. ++|| +++- ...
T Consensus 17 d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-~~~ 95 (143)
T 2qv0_A 17 DEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAW-KEH 95 (143)
T ss_dssp SCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESC-CTT
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCC-HHH
Confidence 3566677788888875 787542 1 23479999987 223345677776543 3444 5553 221
Q ss_pred chhhhccccc-EEEcCCchHHHHHHHHHHhc
Q 007001 131 SRDLKELEGV-SIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 131 ~pe~~~~~~d-~VvG~~~~~~l~ell~~~~~ 160 (622)
..+.....++ ++.-+-....+...|.....
T Consensus 96 ~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 96 AVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp HHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 1122233444 56666677777777776543
No 121
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=23.66 E-value=3.1e+02 Score=23.23 Aligned_cols=66 Identities=9% Similarity=0.181 Sum_probs=49.0
Q ss_pred EEEEEecccccchhHHHHHHHHHHhcCCeeeCCCCCCcEEEEec----------hHHHHHHHHHHhcCCCcEEEEccccc
Q 007001 60 TIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDNSEEADIWLINT----------QSAMDTLIAKCKSAKKPLVVAGCVPQ 129 (622)
Q Consensus 60 ~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~~~~ADlviINT----------~~~~~~ii~~~k~~~~~VVVgGC~aq 129 (622)
.+.+..+.-.+...-++.+...|.... +....++|+- -.....+.+++++.|..+++.|+.++
T Consensus 20 ~v~v~~~~G~L~f~~a~~~~~~l~~~~-------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 92 (130)
T 4dgh_A 20 ELAVYALEGPFFFAAAETFERVMGSIQ-------ETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSR 92 (130)
T ss_dssp TEEEEECCSSCCHHHHHHHHHHHHHSS-------SCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHH
T ss_pred CEEEEEEeeeEeehhHHHHHHHHHHhc-------cCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 366778888999999999999987531 2456778776 34445667788889999999998766
Q ss_pred cch
Q 007001 130 GSR 132 (622)
Q Consensus 130 ~~p 132 (622)
...
T Consensus 93 v~~ 95 (130)
T 4dgh_A 93 VSQ 95 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 122
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=23.56 E-value=3e+02 Score=22.42 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=51.4
Q ss_pred chhHHHHHHHHHHhcCCe-ee--C----------CCCCCcEEEEec---hHHHHHHHHHHhcC----CCcEE-EEccccc
Q 007001 71 NQSDSEYMAGQLSAFGYA-LT--D----------NSEEADIWLINT---QSAMDTLIAKCKSA----KKPLV-VAGCVPQ 129 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~-~v--~----------~~~~ADlviINT---~~~~~~ii~~~k~~----~~~VV-VgGC~aq 129 (622)
|....+.+...|...||. +. . .....|+|++.. .....++++++++. ..+|| +++-...
T Consensus 14 ~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (129)
T 3h1g_A 14 SSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGK 93 (129)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCCh
Confidence 455667788888888985 22 1 123579999876 22334566666652 23444 5543211
Q ss_pred cch-hhhcccc-cEEEcCCchHHHHHHHHHHhcC
Q 007001 130 GSR-DLKELEG-VSIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 130 ~~p-e~~~~~~-d~VvG~~~~~~l~ell~~~~~g 161 (622)
... +.....+ +++.-+-....+.+.|+....+
T Consensus 94 ~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 94 AEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 111 1122334 4577777777788877766543
No 123
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=23.48 E-value=3e+02 Score=22.50 Aligned_cols=101 Identities=12% Similarity=0.191 Sum_probs=58.8
Q ss_pred ccEEEEEecccccchhHHHHHHHHHHh-cCCe-eeC--C---------CCCCcEEEEec---hHHHHHHHHHHhc--C--
Q 007001 58 TETIYMKTFGCSHNQSDSEYMAGQLSA-FGYA-LTD--N---------SEEADIWLINT---QSAMDTLIAKCKS--A-- 117 (622)
Q Consensus 58 ~~~v~i~TlGC~~N~~Dse~m~~~L~~-~G~~-~v~--~---------~~~ADlviINT---~~~~~~ii~~~k~--~-- 117 (622)
+.+|.|.. -|....+.+...|.. .||+ +.. + ....|+|++.. .....++++++++ .
T Consensus 8 ~~~iLivd----d~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 8 DFSILIIE----DDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp -CEEEEEC----SCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTT
T ss_pred CceEEEEE----CCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCcccc
Confidence 34555543 456677788888988 8998 321 1 13479999987 2233456777766 2
Q ss_pred CCcEE-EEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHhcCC
Q 007001 118 KKPLV-VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETLKGH 162 (622)
Q Consensus 118 ~~~VV-VgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~~g~ 162 (622)
+.+|| +++....... +.....++ ++.-+-....+...|.....+.
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 23444 5553221111 12233444 5667777778888888766543
No 124
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=22.90 E-value=1.5e+02 Score=26.97 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=43.1
Q ss_pred cEEEEEecccccchhHHHHHHHHHH------hcCCeeeCC---------------------------CCCCcEEEEec--
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLS------AFGYALTDN---------------------------SEEADIWLINT-- 103 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~------~~G~~~v~~---------------------------~~~ADlviINT-- 103 (622)
++|++ +||.....-.+.+...|. ..|+..... ..+-|++|+-|
T Consensus 42 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 119 (196)
T 2yva_A 42 NKILC--CGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTR 119 (196)
T ss_dssp CCEEE--EESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 45554 577677777788888887 566643211 23458777766
Q ss_pred --hHHHHHHHHHHhcCCCcEE-EEcc
Q 007001 104 --QSAMDTLIAKCKSAKKPLV-VAGC 126 (622)
Q Consensus 104 --~~~~~~ii~~~k~~~~~VV-VgGC 126 (622)
.....+.++.+|++|.++| +++-
T Consensus 120 G~t~~~i~~~~~ak~~g~~vI~IT~~ 145 (196)
T 2yva_A 120 GNSRDIVKAVEAAVTRDMTIVALTGY 145 (196)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556678888999997654 6664
No 125
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=22.87 E-value=99 Score=28.46 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=43.6
Q ss_pred cEEEEEecccccchhHHHHHHHHH------HhcCCeeeC---------------------------CCCCCcEEEEec--
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQL------SAFGYALTD---------------------------NSEEADIWLINT-- 103 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L------~~~G~~~v~---------------------------~~~~ADlviINT-- 103 (622)
++|++ +||.....-...+...| ...|+.... ...+-|++|+-|
T Consensus 46 ~~I~i--~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~S 123 (199)
T 1x92_A 46 GKILS--CGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTS 123 (199)
T ss_dssp CCEEE--ECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSS
T ss_pred CEEEE--EcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHhCCCCCCEEEEEeCC
Confidence 45555 57777777788888888 445664321 124458887766
Q ss_pred --hHHHHHHHHHHhcCCCcEE-EEcc
Q 007001 104 --QSAMDTLIAKCKSAKKPLV-VAGC 126 (622)
Q Consensus 104 --~~~~~~ii~~~k~~~~~VV-VgGC 126 (622)
.....++++.+|++|.+|| +++-
T Consensus 124 G~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 124 GNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4556678889999997654 6663
No 126
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=22.80 E-value=2.8e+02 Score=24.86 Aligned_cols=90 Identities=10% Similarity=0.124 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHhcCCeeeC-----------CCCCCcEEEEec---hHHHHHHHHHHhcCC--Cc-EEEEccccccch-
Q 007001 71 NQSDSEYMAGQLSAFGYALTD-----------NSEEADIWLINT---QSAMDTLIAKCKSAK--KP-LVVAGCVPQGSR- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~-----------~~~~ADlviINT---~~~~~~ii~~~k~~~--~~-VVVgGC~aq~~p- 132 (622)
+....+.+...|...||++.. ....+|+|++.. .....++++++++.+ .+ |+++|.......
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~ 92 (208)
T 1yio_A 13 DMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTV 92 (208)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCH
T ss_pred CHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHH
Confidence 344566777888888887642 134589999987 222345666666543 34 455654322221
Q ss_pred hhhccccc-EEEcCCchHHHHHHHHHHhc
Q 007001 133 DLKELEGV-SIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 133 e~~~~~~d-~VvG~~~~~~l~ell~~~~~ 160 (622)
......++ ++.-+-..+.+...+.....
T Consensus 93 ~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 93 RAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp HHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 22233444 56666677777777766544
No 127
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=22.80 E-value=2.9e+02 Score=21.93 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHhcCCeeeC--C---------CCCCcEEEEec---hHHHHHHHHHHhcCC--CcE-EEEccccccch-h
Q 007001 72 QSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINT---QSAMDTLIAKCKSAK--KPL-VVAGCVPQGSR-D 133 (622)
Q Consensus 72 ~~Dse~m~~~L~~~G~~~v~--~---------~~~ADlviINT---~~~~~~ii~~~k~~~--~~V-VVgGC~aq~~p-e 133 (622)
....+.+...|...||.+.. + ....|++++.. .....++++++++.. .+| ++++....... +
T Consensus 10 ~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 89 (121)
T 2pl1_A 10 ALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVE 89 (121)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHH
Confidence 34456677778888887532 1 12479999876 222234566665433 344 45553221111 1
Q ss_pred hhcccc-cEEEcCCchHHHHHHHHHHh
Q 007001 134 LKELEG-VSIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 134 ~~~~~~-d~VvG~~~~~~l~ell~~~~ 159 (622)
.....+ +++.-+-..+.+...++...
T Consensus 90 ~~~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 90 VLSAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp HHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHcCccceEECCCCHHHHHHHHHHHH
Confidence 223333 45777777777777766543
No 128
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=22.69 E-value=60 Score=31.07 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=19.9
Q ss_pred HHHHHHhcCCeeeCCCCCCcEEEEe
Q 007001 78 MAGQLSAFGYALTDNSEEADIWLIN 102 (622)
Q Consensus 78 m~~~L~~~G~~~v~~~~~ADlviIN 102 (622)
+..+|.+.||..+++.+.||++|=-
T Consensus 65 V~~~L~akG~~~v~~~~~pDllV~~ 89 (197)
T 4f54_A 65 YTENMEAXGYQPAADXESADLGIQV 89 (197)
T ss_dssp HHHHHHHTTCEECSSTTTCSEEEEE
T ss_pred HHHHHHhcCceecCCCCCCCEEEEE
Confidence 4467888999999888899987643
No 129
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=22.64 E-value=1.7e+02 Score=24.10 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=50.2
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC--CCc-EEEEccccccch-
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA--KKP-LVVAGCVPQGSR- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~--~~~-VVVgGC~aq~~p- 132 (622)
+....+.+...|...||.+... ....|++++.. .....++++++++. +.+ |++++.......
T Consensus 12 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 91 (132)
T 3crn_A 12 DTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSV 91 (132)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHH
Confidence 4555677788888888875421 23479999986 21223455555442 334 445554321111
Q ss_pred hhhccccc-EEEcCCchHHHHHHHHHHhc
Q 007001 133 DLKELEGV-SIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 133 e~~~~~~d-~VvG~~~~~~l~ell~~~~~ 160 (622)
+.....++ ++.-+-....+...++....
T Consensus 92 ~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 92 FSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 12233344 57777777777777776543
No 130
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=22.36 E-value=2.3e+02 Score=23.99 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=55.0
Q ss_pred cEEEEEecccccchhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC--CCcEE
Q 007001 59 ETIYMKTFGCSHNQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA--KKPLV 122 (622)
Q Consensus 59 ~~v~i~TlGC~~N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~--~~~VV 122 (622)
.+|.|+. -|....+.+...|...||++... ....|+|++.. ......+++.+++. ..+||
T Consensus 8 ~~iLivd----d~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 8 YTVMLVD----DEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp CEEEEEC----SCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CeEEEEc----CCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 3555543 35666778888898899976421 23589999987 22233455555543 34444
Q ss_pred -EEccccccch-hhhccc-cc-EEEcCCchHHHHHHHHHHhc
Q 007001 123 -VAGCVPQGSR-DLKELE-GV-SIVGVQQIDRVVEVVEETLK 160 (622)
Q Consensus 123 -VgGC~aq~~p-e~~~~~-~d-~VvG~~~~~~l~ell~~~~~ 160 (622)
+++....... +..... ++ ++.-+-....+...|.....
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHH
Confidence 5543221111 112233 44 56666677777777766544
No 131
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.21 E-value=2.8e+02 Score=23.11 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhc--C--CCcEE-EEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKS--A--KKPLV-VAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~--~--~~~VV-VgGC~aq~~ 131 (622)
|....+.+...|...||++... ....|+|++.. .....++++++++ . +.+|| +++......
T Consensus 17 ~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~ 96 (147)
T 2zay_A 17 QLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKE 96 (147)
T ss_dssp TGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHH
T ss_pred CHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHH
Confidence 4555677888888888876421 12479999987 2233466777765 2 33554 555322111
Q ss_pred h-hhhccccc-EEEcCCchHHHHHHHHHHh
Q 007001 132 R-DLKELEGV-SIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 132 p-e~~~~~~d-~VvG~~~~~~l~ell~~~~ 159 (622)
. +.....++ ++.-+-....+...|....
T Consensus 97 ~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 126 (147)
T 2zay_A 97 EAQLLDMGFIDFIAKPVNAIRLSARIKRVL 126 (147)
T ss_dssp HHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11233444 5666667777777776654
No 132
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.05 E-value=3e+02 Score=22.71 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=51.0
Q ss_pred cchhHHHHHHHHHHhcCC--eeeC--C---------C----------CCCcEEEEec---hHHHHHHHHHHhcCC----C
Q 007001 70 HNQSDSEYMAGQLSAFGY--ALTD--N---------S----------EEADIWLINT---QSAMDTLIAKCKSAK----K 119 (622)
Q Consensus 70 ~N~~Dse~m~~~L~~~G~--~~v~--~---------~----------~~ADlviINT---~~~~~~ii~~~k~~~----~ 119 (622)
-|....+.+...|...|| .+.. + . ..+|++++.. .....++++++++.. .
T Consensus 14 d~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 93 (149)
T 1k66_A 14 DSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKI 93 (149)
T ss_dssp CCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGS
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCC
Confidence 355667778888888888 3321 1 1 5689999987 223346677776542 3
Q ss_pred cE-EEEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHh
Q 007001 120 PL-VVAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 120 ~V-VVgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~ 159 (622)
+| ++++....... ......++ ++.-+-..+.+.+.|+...
T Consensus 94 ~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 136 (149)
T 1k66_A 94 PVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFI 136 (149)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 44 45553221111 12233444 4666666677777776654
No 133
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}
Probab=21.97 E-value=5.4e+02 Score=26.10 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=36.7
Q ss_pred CcCCCCHHHHHHHHHHHHHCCCcEEEEeecCC--CCCCCCcCCCHHHHHHHHHHhC
Q 007001 210 HLGSYTVESLVGRVRTVIADGVKEVWLSSEDT--GAYGRDIGVNLPILLNAIVAEL 263 (622)
Q Consensus 210 ~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~--~~yg~d~~~~l~eLL~~l~~~l 263 (622)
+....++++|++++....+.|..-+++.--|. +.--.| ...+.++++.|.+..
T Consensus 25 P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d-~~~~~e~~~~IR~~~ 79 (311)
T 3e02_A 25 PYLPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQD-PDLFMRFLPQLKERT 79 (311)
T ss_dssp TTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECC-HHHHTTTHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCC-HHHHHHHHHHHHHhC
Confidence 35567899999999999999999888876542 211111 124667778887654
No 134
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=21.80 E-value=4.8e+02 Score=26.45 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHCCCcEEEEeecCCCCCCCCcC-CCHHHHHHHHHHhCCCCCceeEEE-eecCCcchhHHHHHHHHHHhC
Q 007001 217 ESLVGRVRTVIADGVKEVWLSSEDTGAYGRDIG-VNLPILLNAIVAELPPDGSTMLRI-GMTNPPFILEHLKEIAEVLRH 294 (622)
Q Consensus 217 e~Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~-~~l~eLL~~l~~~l~~~~~~~iri-~~~~p~~i~~~l~el~~l~~~ 294 (622)
+.+++.++.+++.|..-|.+.++.+.-...+.. ....++++.+.+.. ...+.+ .+-+|..-.+-++...+....
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~----~vplsI~DT~~~~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI----DVPLMIIGCGVEEKDAEIFPVIGEALSG 149 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC----SSCEEEECCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC----CceEEEECCCCCCCCHHHHHHHHHhCCC
Confidence 788888999999999988887753211111110 12244666666543 356777 763433222222222222211
Q ss_pred -CCCceeecccCCCCCHHHHHhhcC---C----C--CHHHHHHHHHHHHHhCCCC---EEEEEEEEcCCCCCHHHHHHHH
Q 007001 295 -PCVYSFLHVPVQSGSDAVLSAMNR---E----Y--TLSDFRTVVDTLIELVPGM---QIATDIICGFPGETDEDFNQTV 361 (622)
Q Consensus 295 -~~v~~~l~IGlQSgsd~vLk~MnR---~----~--t~e~~~~~I~~lr~~~pgi---~i~td~IvGfPGETeedf~eTl 361 (622)
..+.+.++-. -.++++....+ + + +.+.+.+.++.+.++ |+ .|-.|-.+|+.|-+.+.-.+++
T Consensus 150 ~k~iINdvs~~---~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a~~~--Gi~~e~IilDPg~g~~g~~~e~~~~~l 224 (310)
T 2h9a_B 150 RNCLLSSATKD---NYKPIVATCMVHGHSVVASAPLDINLSKQLNIMIMEM--NLAPNRIIMDPLIGALGYGIEYSYSII 224 (310)
T ss_dssp SCCEEEEECTT---THHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTT--TCCGGGEEEECCCCCTTTTHHHHHHHH
T ss_pred CCCEEEECCCC---ccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHHHHC--CCChhhEEEeCCCccccCchHhHHHHH
Confidence 1134444432 23445433211 1 1 467778888888887 76 5778888886675555444666
Q ss_pred HHHHh
Q 007001 362 NLIKE 366 (622)
Q Consensus 362 ~fl~e 366 (622)
+.++.
T Consensus 225 ~~ir~ 229 (310)
T 2h9a_B 225 ERMRL 229 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
No 135
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=21.78 E-value=2.9e+02 Score=22.89 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=51.6
Q ss_pred chhHHHHHHHHHHhcCCeeeCC-----------CCCCcEEEEec---hHHHHHHHHHHhcC----CCcE-EEEccccccc
Q 007001 71 NQSDSEYMAGQLSAFGYALTDN-----------SEEADIWLINT---QSAMDTLIAKCKSA----KKPL-VVAGCVPQGS 131 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~~-----------~~~ADlviINT---~~~~~~ii~~~k~~----~~~V-VVgGC~aq~~ 131 (622)
+....+.+...|...||++... ....|+|++.. .....++++++++. ..+| +++|-.....
T Consensus 13 ~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~ 92 (136)
T 3t6k_A 13 DDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISA 92 (136)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHH
T ss_pred CHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHH
Confidence 3445567778888888876421 23579999987 22233455555542 3344 4555321111
Q ss_pred h-hhhcccc-cEEEcCCchHHHHHHHHHHhcC
Q 007001 132 R-DLKELEG-VSIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 132 p-e~~~~~~-d~VvG~~~~~~l~ell~~~~~g 161 (622)
. +.....+ +++.-+-..+.+...+.....+
T Consensus 93 ~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 93 KIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp HHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 1 1123334 4577777777788888776654
No 136
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=21.73 E-value=2.1e+02 Score=29.25 Aligned_cols=114 Identities=11% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHHHHCCCc--EEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhHHHHHHHHHHhCCCC
Q 007001 220 VGRVRTVIADGVK--EVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILEHLKEIAEVLRHPCV 297 (622)
Q Consensus 220 v~Ei~~L~~~Gvk--eI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~~l~el~~l~~~~~v 297 (622)
+.|+..+.+.|+. .|.+.+.. .+ .+-++.+.+. +...+.+. + .+.++.+.+......+
T Consensus 71 ~~E~~~~~~~G~~~~~I~~~~~~-----k~-----~~~l~~a~~~----~v~~~~vd--s----~~~l~~l~~~~~~~~v 130 (372)
T 2nva_A 71 SSEIKKVIQIGVSPSRIIFAHTM-----KT-----IDDLIFAKDQ----GVDIATFD--S----SFELDKIHTYHPNCKM 130 (372)
T ss_dssp HHHHHHHHHHTCCGGGEEECCSC-----CC-----HHHHHHHHHH----TCCEEEEC--S----HHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHcCCCHHHEEECCCC-----CC-----HHHHHHHHHC----CCCEEEeC--C----HHHHHHHHHhCCCCeE
Confidence 4678888888884 57776531 11 2334444432 22223332 1 1233334444333334
Q ss_pred ceeecccCCCCCHHHHHhhcC-CCCHHHHHHHHHHHHHhCCCCEE-EEEEEEcCCCCCHHHHH
Q 007001 298 YSFLHVPVQSGSDAVLSAMNR-EYTLSDFRTVVDTLIELVPGMQI-ATDIICGFPGETDEDFN 358 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR-~~t~e~~~~~I~~lr~~~pgi~i-~td~IvGfPGETeedf~ 358 (622)
.-+++.|.++. ....++| |.+.+++.++++.+++. ++.+ ...+-+|--..+.+.+.
T Consensus 131 ~lrv~~~~~~~---~~~~~~R~G~~~~~~~~~~~~~~~~--~l~~~Gl~~H~gs~~~~~~~~~ 188 (372)
T 2nva_A 131 ILRIRCDDPNA---TVQLGNKFGANEDEIRHLLEYAKQL--DIEVIGISFHVGSGSRNPEAYY 188 (372)
T ss_dssp EEEBCCCCTTC---SBCCTTTSSBCGGGHHHHHHHHHHT--TCCEEEEECCCCBSBCCHHHHH
T ss_pred EEEEecCCCCC---cccCCCCCCCCHHHHHHHHHHHHHc--CCeEEEEEEEcCCCCCCHHHHH
Confidence 44566665321 1122355 56778888899988886 7664 23333443333444443
No 137
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.45 E-value=3.1e+02 Score=22.24 Aligned_cols=89 Identities=15% Similarity=0.241 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHHhcCC--eeeC--C---------C-------CCCcEEEEec---hHHHHHHHHHHhcC----CCcE-E
Q 007001 71 NQSDSEYMAGQLSAFGY--ALTD--N---------S-------EEADIWLINT---QSAMDTLIAKCKSA----KKPL-V 122 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~--~~v~--~---------~-------~~ADlviINT---~~~~~~ii~~~k~~----~~~V-V 122 (622)
|....+.+...|...|| .+.. + . ...|+|++.. .....++++++++. +.+| +
T Consensus 11 ~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ 90 (140)
T 1k68_A 11 NKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVV 90 (140)
T ss_dssp CHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEE
T ss_pred CHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEE
Confidence 55667788888888888 4321 1 1 4689999987 22234566666653 2344 4
Q ss_pred EEccccccch-hhhccccc-EEEcCCchHHHHHHHHHHh
Q 007001 123 VAGCVPQGSR-DLKELEGV-SIVGVQQIDRVVEVVEETL 159 (622)
Q Consensus 123 VgGC~aq~~p-e~~~~~~d-~VvG~~~~~~l~ell~~~~ 159 (622)
+++....... +.....++ ++.-+-....+...|....
T Consensus 91 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 129 (140)
T 1k68_A 91 LSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIE 129 (140)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred EecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHH
Confidence 5554321111 12233444 4666667777777776554
No 138
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=21.45 E-value=5.1e+02 Score=25.09 Aligned_cols=140 Identities=11% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCcEEEEeecCCCCCCCCcCCCHHHHHHHHHHhCCCCCceeEEEeecCCcchhH-HHHHHHHHHhCCCC
Q 007001 219 LVGRVRTVIADGVKEVWLSSEDTGAYGRDIGVNLPILLNAIVAELPPDGSTMLRIGMTNPPFILE-HLKEIAEVLRHPCV 297 (622)
Q Consensus 219 Iv~Ei~~L~~~GvkeI~L~g~d~~~yg~d~~~~l~eLL~~l~~~l~~~~~~~iri~~~~p~~i~~-~l~el~~l~~~~~v 297 (622)
+-+-++.+.+.|+++|.++--.++ -|.... ++++.++.+...++ ++.+..|-.... ..+.+.+.+...
T Consensus 62 i~~aL~~l~~~G~~~vvV~Pl~l~-~G~~~~-di~~~v~~~~~~~~-------~i~~~~pl~~~~~~~~~l~~~l~~~-- 130 (264)
T 2xwp_A 62 PLQALQKLAAQGYQDVAIQSLHII-NGDEYE-KIVREVQLLRPLFT-------RLTLGVPLLSSHNDYVQLMQALRQQ-- 130 (264)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCSS-SSHHHH-HHHHHHHHHGGGCS-------EEEEECCSSCSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhCCCCEEEEEeCccc-CcHHHH-HHHHHHHHHHhhCC-------ceEEecCCCCCHHHHHHHHHHHHHh--
Q ss_pred ceeecccCCCCCHHHHHhhcCCCC---HHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEE
Q 007001 298 YSFLHVPVQSGSDAVLSAMNREYT---LSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHI 374 (622)
Q Consensus 298 ~~~l~IGlQSgsd~vLk~MnR~~t---~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i 374 (622)
++ +..++..+=.|..|.+ ...+.+.-..+++. +..+...++-+.|. +.+.++.+.+.+..++.+
T Consensus 131 -----~~-~~~~~~~lvl~gHGs~~~~~~~~~~~a~~l~~~--~~~v~~g~~e~~P~-----~~~~l~~l~~~G~~~v~v 197 (264)
T 2xwp_A 131 -----MP-SLRQTEKVVFMGHGASHHAFAAYACLDHMMTAQ--RFPARVGAVESYPE-----VDILIDSLRDEGVTGVHL 197 (264)
T ss_dssp -----SC-CCCTTEEEEEEECCCSSGGGHHHHHHHHHHHHT--TCSEEEEESSSSSC-----HHHHHHHHHHHTCCEEEE
T ss_pred -----cc-ccCCCCeEEEEECCCCchhhHHHHHHHHHHHhh--CCCEEEEEeCCCCC-----HHHHHHHHHHCCCCEEEE
Q ss_pred EEeeeCCC
Q 007001 375 SQFYPRPG 382 (622)
Q Consensus 375 ~~ysP~PG 382 (622)
.+|.-.+|
T Consensus 198 ~P~~l~aG 205 (264)
T 2xwp_A 198 MPLMLVAG 205 (264)
T ss_dssp EECSSCCC
T ss_pred EeeecccC
No 139
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.98 E-value=1.6e+02 Score=24.25 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHHhcCCeeeC--C---------CCCCcEEEEec---hHHHHHHHHHHhcCC--CcEEEEccccccch--
Q 007001 71 NQSDSEYMAGQLSAFGYALTD--N---------SEEADIWLINT---QSAMDTLIAKCKSAK--KPLVVAGCVPQGSR-- 132 (622)
Q Consensus 71 N~~Dse~m~~~L~~~G~~~v~--~---------~~~ADlviINT---~~~~~~ii~~~k~~~--~~VVVgGC~aq~~p-- 132 (622)
|....+.+...|...||.+.. + ....|+|++.. .....++++++++.+ .+||+-.-......
T Consensus 16 ~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~ 95 (137)
T 3hdg_A 16 DTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFI 95 (137)
T ss_dssp CHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHH
Confidence 566667788888888876532 2 13579999987 333445666666554 35554332222111
Q ss_pred hhhccccc-EEEcCCchHHHHHHHHHHhcC
Q 007001 133 DLKELEGV-SIVGVQQIDRVVEVVEETLKG 161 (622)
Q Consensus 133 e~~~~~~d-~VvG~~~~~~l~ell~~~~~g 161 (622)
+.....++ ++.-+-....+.+.|+....+
T Consensus 96 ~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 96 KAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp HHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 11233444 455666777788888776654
No 140
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=20.73 E-value=1.9e+02 Score=29.90 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=41.3
Q ss_pred cCccCCCcCCCCHHHHHHHHHHHHHCCCcEEEEeecCCCC-CCCCc--------CCCHHHHHHHHHHhCC
Q 007001 204 TKHARGHLGSYTVESLVGRVRTVIADGVKEVWLSSEDTGA-YGRDI--------GVNLPILLNAIVAELP 264 (622)
Q Consensus 204 ip~~rG~~rsr~~e~Iv~Ei~~L~~~GvkeI~L~g~d~~~-yg~d~--------~~~l~eLL~~l~~~l~ 264 (622)
++...|-+| ++++.++++++.+++.|++.|.|+|.-... . +|. ..-+..-++.|.+.+|
T Consensus 57 I~SMPGv~r-~sid~l~~~~~~~~~lGi~~v~LFgv~~~~~~-KD~~gs~A~~~~g~v~rair~iK~~~p 124 (342)
T 1h7n_A 57 IDSLPNINR-IGVNRLKDYLKPLVAKGLRSVILFGVPLIPGT-KDPVGTAADDPAGPVIQGIKFIREYFP 124 (342)
T ss_dssp CTTSTTCEE-ECHHHHHHHHHHHHHTTCCEEEEEEECCSTTC-CBTTCGGGGCTTSHHHHHHHHHHHHCT
T ss_pred CCCCCCcee-eCHHHHHHHHHHHHHCCCCEEEEecccCccCC-CCccccccCCCCChHHHHHHHHHHHCC
Confidence 444545444 699999999999999999999999862210 1 111 1236778888888776
No 141
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.65 E-value=51 Score=30.46 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=37.3
Q ss_pred cCCeeeCCC-CCCcEEEEec----------hHHHHHHHHHHhcCCCcEEEEccccccchh---hhcccccEEE
Q 007001 85 FGYALTDNS-EEADIWLINT----------QSAMDTLIAKCKSAKKPLVVAGCVPQGSRD---LKELEGVSIV 143 (622)
Q Consensus 85 ~G~~~v~~~-~~ADlviINT----------~~~~~~ii~~~k~~~~~VVVgGC~aq~~pe---~~~~~~d~Vv 143 (622)
.||+..+.. ..||+++|-. .+.+++++.++-+.+++ |+|=|.-....+ ...++-|.|+
T Consensus 73 ~G~~~~~~~~~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~k-iiGvCFms~F~kagW~~~IdFD~iI 144 (157)
T 2r47_A 73 YGVELGEISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGE-LMGLCYMDMFARAGWYELLDFDCVI 144 (157)
T ss_dssp TEEEEEEECCCCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEE-EEEEEETTHHHHTTHHHHSCCSEEE
T ss_pred CceEeccccCCCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCC-EEEEEhHHHHHHcCCCccCCccEEE
Confidence 455543332 5899999866 66788888888543444 777798776654 2455556554
No 142
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=20.28 E-value=37 Score=21.48 Aligned_cols=12 Identities=42% Similarity=0.963 Sum_probs=10.1
Q ss_pred chhhHHHHhhhc
Q 007001 550 QNVIGWLLRKRK 561 (622)
Q Consensus 550 ~~~~~~~~~~~~ 561 (622)
+.+|.|+-|||+
T Consensus 14 P~liSWiK~kr~ 25 (26)
T 3qrx_B 14 PALISWIKRKRQ 25 (26)
T ss_pred hHHHHHHHHHhc
Confidence 578999999885
No 143
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=20.17 E-value=6.4e+02 Score=24.91 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=16.5
Q ss_pred HhhcCCCCHHHHHHHHHHHHHhCCCC
Q 007001 314 SAMNREYTLSDFRTVVDTLIELVPGM 339 (622)
Q Consensus 314 k~MnR~~t~e~~~~~I~~lr~~~pgi 339 (622)
+.+..|.+.+++.+.++.+|+..+.+
T Consensus 73 rAL~~G~~~~~~~~~v~~~r~~~~~~ 98 (271)
T 3nav_A 73 RALAAKTTPDICFELIAQIRARNPET 98 (271)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 44556677777777777777653333
No 144
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=20.13 E-value=1.7e+02 Score=30.09 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEee--eC----CCCccccCCCCCH
Q 007001 320 YTLSDFRTVVDTLIELVPGMQIATDIICGFPGETDEDFNQTVNLIKEYKFPQVHISQFY--PR----PGTPAARMKKVPS 393 (622)
Q Consensus 320 ~t~e~~~~~I~~lr~~~pgi~i~td~IvGfPGETeedf~eTl~fl~el~~d~v~i~~ys--P~----PGTpa~~~~~v~~ 393 (622)
.|.+++...++.+.+..|++.+..|+=.|| | +.+++.+++..+.+.+..-+++=--. |+ +|.+ -+|.
T Consensus 83 vt~~em~~~~~~I~r~~~~~PviaD~d~Gy-g-~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~-----L~p~ 155 (318)
T 1zlp_A 83 LTTTEVVEATRRITAAAPNLCVVVDGDTGG-G-GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKA-----VVPA 155 (318)
T ss_dssp SCHHHHHHHHHHHHHHSSSSEEEEECTTCS-S-SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCC-----BCCH
T ss_pred CCHHHHHHHHHHHHhhccCCCEEEeCCCCC-C-CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCc-----cCCH
Confidence 689999999999999988899999999998 6 88899999998889999888874322 11 1222 2566
Q ss_pred HHHHHHHHHHHHH
Q 007001 394 AVVKKRSRELTSV 406 (622)
Q Consensus 394 ~~~k~R~~~L~~l 406 (622)
++..+|.+.+.+.
T Consensus 156 ~e~~~rI~Aa~~A 168 (318)
T 1zlp_A 156 EEHALKIAAAREA 168 (318)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6665665544443
Done!