BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007002
(622 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana
benthamiana GN=GYRB PE=2 SV=1
Length = 731
Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/622 (86%), Positives = 591/622 (95%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTGPRGLHHLVYEILDNAVDEAQAG+A+ I+V L ADNSVS+ADNGRGIP +LHP
Sbjct: 110 MYIGSTGPRGLHHLVYEILDNAVDEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHPV 169
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T KS+LETVLTVLHAGGKFGGSSSGY+VSGGLHGVGLSVVNALS++LEVT+WRDG EY Q
Sbjct: 170 TKKSSLETVLTVLHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQ 229
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
KYSRGKP+TTL CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELAFLNP
Sbjct: 230 KYSRGKPITTLICHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNP 289
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
+LTIAL+KED DPEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITID+AL
Sbjct: 290 ELTIALKKEDIDPEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMAL 349
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
QWCSDAYSDTMLGYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLSGEHV
Sbjct: 350 QWCSDAYSDTMLGYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHV 409
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 360
REGLTC+ISV+VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS
Sbjct: 410 REGLTCVISVKVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 469
Query: 361 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
L+ALKAALAAKRAR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGSAKQG
Sbjct: 470 LNALKAALAAKRARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQG 529
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYHKIII
Sbjct: 530 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIII 589
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
LTDADVDGAHIRTLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAELKKV
Sbjct: 590 LTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKV 649
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
+ SFPSNA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSLMG+R
Sbjct: 650 QRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSR 709
Query: 601 VDTRKELIQNAANLVNLDHLDI 622
VD RK+LIQN+A+++NL+ LDI
Sbjct: 710 VDIRKQLIQNSASMMNLEQLDI 731
>sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana
GN=GYRBM PE=2 SV=1
Length = 732
Score = 1076 bits (2782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/622 (84%), Positives = 578/622 (92%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD SVSV DNGRGIP DLHPA
Sbjct: 111 MYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDLHPA 170
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T KS+LETVLTVLHAGGKFGG+SSGYSVSGGLHGVGLSVVNALSE+LEV+VWRDGME+ Q
Sbjct: 171 TKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGMEHKQ 230
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAFLNP
Sbjct: 231 NYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAFLNP 290
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
K+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D+AL
Sbjct: 291 KVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVDVAL 350
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSGEHV
Sbjct: 351 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHV 410
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 360
REGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+SI+SKS
Sbjct: 411 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESIISKS 470
Query: 361 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
L+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSAKQG
Sbjct: 471 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSAKQG 530
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHKIII
Sbjct: 531 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHKIII 590
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
LTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA+LKK+
Sbjct: 591 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKI 650
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSSLMGAR
Sbjct: 651 TSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGAR 710
Query: 601 VDTRKELIQNAANLVNLDHLDI 622
VD RKELI+NAA +NL LDI
Sbjct: 711 VDVRKELIKNAATRINLQRLDI 732
>sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana
GN=GYRBC PE=2 SV=3
Length = 730
Score = 1048 bits (2709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/622 (84%), Positives = 578/622 (92%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLVYEILDNA+DEAQAG+AS I+V L +D+SVS++DNGRGIP DLHPA
Sbjct: 109 MYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVVLHSDDSVSISDNGRGIPTDLHPA 168
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T KS+LETVLTVLHAGGKFGG SSGYSVSGGLHGVGLSVVNALSE+LEV V RDGME+ Q
Sbjct: 169 TGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGMEFQQ 228
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
KYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIRELAFLNP
Sbjct: 229 KYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIRELAFLNP 288
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
K+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T+D++L
Sbjct: 289 KVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTVDVSL 348
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KDISLSGEHV
Sbjct: 349 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHV 408
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 360
REGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDVL+SI+SKS
Sbjct: 409 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKS 468
Query: 361 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
L+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDSAGGSAKQG
Sbjct: 469 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQG 528
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE LRYHKIII
Sbjct: 529 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIII 588
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
LTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGKQ YCYDDA LKK+
Sbjct: 589 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKI 648
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
+SFP NA Y+IQRFKGLGEMMP QLWETT+NP+ R+LKQLV++DAAE N+VFSSLMGAR
Sbjct: 649 TASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGAR 708
Query: 601 VDTRKELIQNAANLVNLDHLDI 622
VD RKELI++AA +NL++LDI
Sbjct: 709 VDVRKELIKSAATRMNLENLDI 730
>sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=GYRB PE=2 SV=1
Length = 729
Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/622 (81%), Positives = 567/622 (91%), Gaps = 1/622 (0%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLVYEILDNAVDEAQAGYA+ ++V L DNSVSV DNGRGIP D+HP
Sbjct: 109 MYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQ 168
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T KS +ETVLT++HAGGKFGGS SGY+VSGGLHGVGLSVVNALSE+LEVTVWRDG EY Q
Sbjct: 169 TKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQ 228
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAFLNP
Sbjct: 229 NYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNP 288
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D++L
Sbjct: 289 ELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSL 347
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
QWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSGEHV
Sbjct: 348 QWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHV 407
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 360
REG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSILSKS
Sbjct: 408 REGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKS 467
Query: 361 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
L+ALKAALAAKRAR+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSAKQG
Sbjct: 468 LNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQG 527
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDR+FQAILPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYHKI+I
Sbjct: 528 RDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVI 587
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
LTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+LK++
Sbjct: 588 LTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKEL 647
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
++FP+NA Y IQRFKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSLMG R
Sbjct: 648 VNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTR 707
Query: 601 VDTRKELIQNAANLVNLDHLDI 622
VD RK+LIQNAA++VNL+HLDI
Sbjct: 708 VDVRKQLIQNAASMVNLEHLDI 729
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2
Length = 636
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/630 (52%), Positives = 444/630 (70%), Gaps = 25/630 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLVYE++DN+VDEA AGY I V L D SV V DNGRGIP+D+HP
Sbjct: 24 MYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHEDGSVEVEDNGRGIPVDIHPE 83
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+SALE V TVLHAGGKF S Y +SGGLHGVG+SVVNALSE LEV V RDG Y Q
Sbjct: 84 EGRSALEVVFTVLHAGGKF--SKDSYKISGGLHGVGVSVVNALSEWLEVRVHRDGKIYRQ 141
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+Y RGKPVT + + D+ GT +RF PD +F+ +FD + + R+RE+AFL P
Sbjct: 142 RYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET-EFDPDILEHRLREIAFLVP 196
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV--------D 232
L I E D + + F GG+ EYV++LN KK LHDV+ ++ D
Sbjct: 197 GLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKALHDVIHIKRTEKVKTKNGED 252
Query: 233 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 292
+ +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K++LTR +N GKK +K KD
Sbjct: 253 EVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKSTLTRLMNEYGKKHNFLK-KD 310
Query: 293 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 352
S GE VREGLT +ISV V NPEFEGQTK++LGN EV++ V ++++E L + + +P++
Sbjct: 311 DSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKEAVTKAMREELKKIFDANPEL 370
Query: 353 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDS 412
+ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKLADCSST E++E+FIVEGDS
Sbjct: 371 VKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKLADCSSTHREKTELFIVEGDS 430
Query: 413 AGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA 472
AGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I ++I A+G G+ G+DF +
Sbjct: 431 AGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQISDIIVAVGTGI-GDDFDESK 489
Query: 473 LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY 532
LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +Y+ +PPLY+++ G++ Y Y
Sbjct: 490 LRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRVYIALPPLYRIKAGREEFYVY 549
Query: 533 DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 592
D EL + K + IQR+KGLGEM P QLWETT+NPE R + ++ IEDA EA+ +
Sbjct: 550 SDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMNPETRKIIRVTIEDAEEADRL 608
Query: 593 FSSLMGARVDTRKELIQNAANLVNLDHLDI 622
F LMG +R+E I+ A + + LDI
Sbjct: 609 FEILMGNDPSSRREFIERHA--LKVKELDI 636
>sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3
SV=1
Length = 638
Score = 622 bits (1605), Expect = e-177, Method: Compositional matrix adjust.
Identities = 315/620 (50%), Positives = 431/620 (69%), Gaps = 12/620 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST +GLHHLV+EI+DN++DEA AGY ++I + + DNS++V DNGRGIP+ +H
Sbjct: 28 MYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIEKDNSITVVDNGRGIPVGIHEK 87
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E ++TVLHAGGKF GS GY VSGGLHGVG SVVNALS L+VTV RDG + Q
Sbjct: 88 MGRPAVEVIMTVLHAGGKFDGS--GYKVSGGLHGVGASVVNALSTELDVTVHRDGKIHRQ 145
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y RG PVT L + D GT F PD ++F+ ++D++ +A R+RELAFL
Sbjct: 146 TYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSETTEYDYDLLANRVRELAFLTK 201
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I + ED + + NEY + GG++ YV++LN K+ +H+ + + DGIT+++A
Sbjct: 202 GVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKEVVHEEPIYIEGEKDGITVEVA 259
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
LQ+ +D+Y+ + + N+I T +GGTH G K LTR +N +K +K+ D +LSG+
Sbjct: 260 LQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVINDYARKKGLIKENDPNLSGDD 318
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT IIS++ P+P+FEGQTKT+LGN E R + D + ++ +PD I+ K
Sbjct: 319 VREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLFSTAMETFMLENPDAAKKIVDK 378
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
L A +A +AAK+AR+L R+KS L S+LPGKLADCSS P SE++IVEGDSAGGSAKQ
Sbjct: 379 GLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSKDPSISELYIVEGDSAGGSAKQ 438
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRDR FQAILPLRGKILNVE+ + N E++++I ALG G+ GEDF E RYHK++
Sbjct: 439 GRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGI-GEDFNLEKARYHKVV 497
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PPLYKV++GK+V+Y Y+D EL++
Sbjct: 498 IMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEE 557
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+ + P +QR+KGLGEM QLWETT++P R L Q+ +EDA +A+ F LMG
Sbjct: 558 LLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGD 617
Query: 600 RVDTRKELIQ-NAANLVNLD 618
+V+ R+ I+ NA + NLD
Sbjct: 618 KVEPRRNFIEANARYVKNLD 637
>sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB
PE=3 SV=2
Length = 637
Score = 622 bits (1604), Expect = e-177, Method: Compositional matrix adjust.
Identities = 322/623 (51%), Positives = 438/623 (70%), Gaps = 19/623 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLVYEI+DN++DEA AGY S+I+V + DNSV+V+D+GRG+PI +H
Sbjct: 28 MYIGSTGTRGLHHLVYEIVDNSIDEALAGYCSHIKVFIHKDNSVTVSDDGRGMPIGIHHK 87
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
K +E ++T+LHAGGKFGG + Y VSGGLHGVG SVVNALSE+ EV V +G + Q
Sbjct: 88 MKKPTVEVIMTILHAGGKFGGGA--YRVSGGLHGVGASVVNALSETCEVEVKTEGHIWKQ 145
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y RGK + + D GT+I F PD ++F ++D++T++ R+RELAFLN
Sbjct: 146 TYHRGKVASPFE----KIGDSDEHGTKIYFKPDPEIFEDT-EYDYDTLSQRLRELAFLNK 200
Query: 181 KLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNTDKKPL-HDVVGFRKDVD-GITID 237
+ I L E D NE F + GGL+ +V +LN +K+ + + + +D +++
Sbjct: 201 GIKIELTDERHDK-----NEIFHYEGGLKSFVSYLNRNKEVVFKEPIYVEGSIDSNYSVE 255
Query: 238 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 297
+ALQ+ +D Y++ + +AN+I TI+GGTH+ G K +LTR +N KK +K+ D +LSG
Sbjct: 256 IALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTALTRVINDYAKKFGYLKENDKNLSG 314
Query: 298 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
E +REGLT ++SV++ P+FEGQTKT+LGN EVR +VD + E ++ YLE +P + ++
Sbjct: 315 EDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIVDSIISERVSTYLEENPQIGKLVI 374
Query: 358 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 417
K+L A +A AAK+AR++ R+KSVL S+SLPGKLADCSS EE EI+IVEGDSAGGSA
Sbjct: 375 DKALVASRAREAAKKAREITRRKSVLESTSLPGKLADCSSKDAEECEIYIVEGDSAGGSA 434
Query: 418 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 477
KQGR+RRFQAILPLRGKI+NVE++ + +EEI+ + A G G+ G+DF LRYHK
Sbjct: 435 KQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKAMATAFGGGI-GKDFDVSKLRYHK 493
Query: 478 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 537
III+TDADVDGAHIRTL+LTFFYRY L EG +++ PPLYKV + ++ Y Y D EL
Sbjct: 494 IIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDKEL 553
Query: 538 KKV-KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 596
+ V + + IQR+KGLGEM P QLWETT+NPEQR L ++ IEDA A+ +F+ L
Sbjct: 554 EDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTIL 613
Query: 597 MGARVDTRKELI-QNAANLVNLD 618
MG +VD R++ I +NA +VNLD
Sbjct: 614 MGDKVDPRRKFIEENATKVVNLD 636
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3
SV=1
Length = 637
Score = 613 bits (1581), Expect = e-174, Method: Compositional matrix adjust.
Identities = 319/620 (51%), Positives = 425/620 (68%), Gaps = 13/620 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AG+ I V + DNS++V DNGRGIP+ +H
Sbjct: 28 MYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVIEEDNSITVTDNGRGIPVGIHEK 87
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E ++TVLHAGGKFGG S LHGVG SVVNALS LEV V R+G ++Q
Sbjct: 88 MGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGASVVNALSTMLEVEVHREGKVHYQ 145
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
K+ RG P L + + DR GT+I F PD +FT F+++T+A R+RELAFLN
Sbjct: 146 KFHRGVPAADLEV----IGTTDRTGTKIHFKPDGDIFTETTVFEYDTLASRLRELAFLNK 201
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLA 239
L I + E+ + +E+ + GG+ +V+ LN ++ LH+ + + G+ +++A
Sbjct: 202 GLRIKITDMR---EEEKSDEFHYEGGIASFVEHLNRTRETLHETPIHIEGEKQGVYVEIA 258
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ +D ++ + +AN+I T +GGTH G K LTR +N +K K+ D +L+GE
Sbjct: 259 VQY-NDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARKHNLFKESDPNLTGED 317
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT IISV++P+P+FEGQTKT+LGN E R + D E+ + +L HP V ++ K
Sbjct: 318 VREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSRFLIEHPQVARKLVDK 377
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
L A +A AAK+AR+L R+KS L SSLPGKLADCSS SEI+IVEGDSAGGSAKQ
Sbjct: 378 GLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISEIYIVEGDSAGGSAKQ 437
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRDR FQAILPLRGKILNVE+ + N EI+ +I ALG G+ G+DF E RYHKII
Sbjct: 438 GRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGI-GDDFDIEKARYHKII 496
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTL+LTFFYRY + L + G +Y+ PPLYKV++GK +QY Y DAEL++
Sbjct: 497 IMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAELQE 556
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+ S P A IQR+KGLGEM P QLWETT++P QR + Q+ +EDA +A+ +F LMG
Sbjct: 557 ILSQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEILMGD 616
Query: 600 RVDTRKELIQ-NAANLVNLD 618
RV+ R++ IQ NA + NLD
Sbjct: 617 RVEPRRDFIQENARYVKNLD 636
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrB PE=3 SV=1
Length = 643
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 323/619 (52%), Positives = 423/619 (68%), Gaps = 11/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+G YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNGTIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I L+ E E+ + + Y + GG++ YV LN +K+PLHD + + D I +++A
Sbjct: 208 GIQITLKDERE--EEVREDSYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEVEIA 265
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
LQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LSGE
Sbjct: 266 LQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGED 324
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I+ K
Sbjct: 325 TREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEK 384
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS K
Sbjct: 385 GIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKS 444
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYHKI+
Sbjct: 445 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYHKIV 503
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D EL K
Sbjct: 504 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDK 563
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F LMG
Sbjct: 564 LKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGD 623
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 624 VVENRRQFIEDNAVYANLD 642
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrB PE=3 SV=1
Length = 643
Score = 603 bits (1554), Expect = e-171, Method: Compositional matrix adjust.
Identities = 323/619 (52%), Positives = 423/619 (68%), Gaps = 11/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG S LHGVG SVVNALS+ LEV V R+G YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSQDLEVYVHRNGTIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L + D+ GT IRF DK++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIFTETTVYNYETLQKRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I L+ E E+ + + Y + GG++ YV LN +K+PLHD + + D I +++A
Sbjct: 208 GIQITLKDERE--EEVREDSYHYEGGIKSYVDLLNENKEPLHDEPIYIHQSKDDIEVEIA 265
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
LQ+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G +SK +K+ LSGE
Sbjct: 266 LQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGTQSKIIKEDKDRLSGED 324
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V I+ K
Sbjct: 325 TREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDRLFSEHFERFLYENPSVGRIIVEK 384
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L SSLPGKLADCSS PEESEIF+VEGDSAGGS K
Sbjct: 385 GIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCSSKNPEESEIFLVEGDSAGGSTKS 444
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ GE F RYHKI+
Sbjct: 445 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGGE-FDISKARYHKIV 503
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y ++D EL K
Sbjct: 504 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDK 563
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+K + +SI R+KGLGEM QLWETT+NPE R + Q+ +EDA +A+ F LMG
Sbjct: 564 LKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHRSMLQVRLEDAIDADQTFEMLMGD 623
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 624 VVENRRQFIEDNAVYANLD 642
>sp|P0A0K7|GYRB_STAAW DNA gyrase subunit B OS=Staphylococcus aureus (strain MW2) GN=gyrB
PE=3 SV=2
Length = 644
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 426/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|P0A0K8|GYRB_STAAU DNA gyrase subunit B OS=Staphylococcus aureus GN=gyrB PE=1 SV=2
Length = 644
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 426/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|Q6GD85|GYRB_STAAS DNA gyrase subunit B OS=Staphylococcus aureus (strain MSSA476)
GN=gyrB PE=3 SV=3
Length = 644
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 426/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|Q2FKQ1|GYRB_STAA3 DNA gyrase subunit B OS=Staphylococcus aureus (strain USA300)
GN=gyrB PE=3 SV=3
Length = 644
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 426/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|Q5HJZ1|GYRB_STAAC DNA gyrase subunit B OS=Staphylococcus aureus (strain COL) GN=gyrB
PE=3 SV=3
Length = 644
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 426/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB
PE=1 SV=2
Length = 644
Score = 591 bits (1524), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 426/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|P66936|GYRB_STAAM DNA gyrase subunit B OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrB PE=1 SV=2
Length = 644
Score = 591 bits (1524), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 426/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K++ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEEKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B OS=Staphylococcus aureus (strain MRSA252)
GN=gyrB PE=3 SV=3
Length = 644
Score = 591 bits (1524), Expect = e-168, Method: Compositional matrix adjust.
Identities = 326/619 (52%), Positives = 425/619 (68%), Gaps = 10/619 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV + DN + V DNGRGIP+D+
Sbjct: 34 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 93
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E +LTVLHAGGKFGG VSGGLHGVG SVVNALS+ LEV V R+ YHQ
Sbjct: 94 MGRPAVEVILTVLHAGGKFGGGGY--KVSGGLHGVGSSVVNALSQDLEVYVHRNETIYHQ 151
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y +G P L V + D+ GT IRF D ++FT +++ T+ RIRELAFLN
Sbjct: 152 AYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNK 207
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I LR E D E + + Y + GG++ YV+ LN +K+P+HD + + D I +++A
Sbjct: 208 GIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNENKEPIHDEPIYIHQSKDDIEVEIA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR LNS G SK +K+ LSGE
Sbjct: 267 IQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSYGLSSKIMKEDKDRLSGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+ E+ +L +P V +++ K
Sbjct: 326 TREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEHFERFLYENPQVARTVVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A +A +AAK+AR++ R+KS L +SLPGKLADCSS +PEE EIF+VEGDSAGGS K
Sbjct: 386 GIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRD R QAILPLRGKILNVE+ + N EI+ +I A G G+ G DF RYHKI+
Sbjct: 446 GRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIGG-DFDLAKARYHKIV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+ PPLYK+ +GKQ Y Y+D EL K
Sbjct: 505 IMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVYNDRELDK 564
Query: 540 VKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGA 599
+KS +SI R+KGLGEM QLWETT+NPE R L Q+ +EDA EA+ F LMG
Sbjct: 565 LKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGD 624
Query: 600 RVDTRKELIQNAANLVNLD 618
V+ R++ I++ A NLD
Sbjct: 625 VVENRRQFIEDNAVYANLD 643
>sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2
Length = 640
Score = 586 bits (1511), Expect = e-166, Method: Compositional matrix adjust.
Identities = 315/622 (50%), Positives = 427/622 (68%), Gaps = 17/622 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST +GLHHLV+EI+DN++DEA AGY I V++ DNS+ V DNGRGIP+ +
Sbjct: 31 MYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIEEDNSIRVTDNGRGIPVGIQEK 90
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E ++TVLHAGGKFGG S LHGVG SVVNALS LEV V R+G ++Q
Sbjct: 91 MGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGASVVNALSTELEVFVHREGKIHYQ 148
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
KY RG PV L + D+ GT RF PD ++F ++ +T+A R+RELAFLN
Sbjct: 149 KYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQETTVYEFDTLATRMRELAFLNR 204
Query: 181 --KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITID 237
KLTI ++E Q E+ + GG++ YV+ LN K+P+H+ V DGI ++
Sbjct: 205 NIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVE 259
Query: 238 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 297
++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR +N G+K+ +KD D +L+G
Sbjct: 260 VSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKNSILKDADSNLTG 318
Query: 298 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
E VREGLT I+S++ PNP+FEGQTKT+LGN E R + + E ++L +P+V I+
Sbjct: 319 EDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIV 378
Query: 358 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 417
K A +A +AAK+AR+L R+KS L SSLPGKLADCSS P SEI+IVEGDSAGGSA
Sbjct: 379 EKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSA 438
Query: 418 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 477
KQGRDR FQAILPL+GKI+NVE+ + N+E++ +I A+G + G DF E RYHK
Sbjct: 439 KQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG-DFDIEKARYHK 497
Query: 478 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 537
+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+ PPL+KV++GK++QY Y++ EL
Sbjct: 498 VIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKEL 557
Query: 538 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 597
+K+ + P+ IQR+KGLGEM P QLWETT++PE R L Q+ ++DA EA+ F LM
Sbjct: 558 EKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILM 617
Query: 598 GARVDTRKELIQ-NAANLVNLD 618
G +V+ R+ IQ NA + NLD
Sbjct: 618 GDKVEPRRNFIQENAKYVKNLD 639
>sp|P0DG05|GYRB_STRPQ DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrB PE=3 SV=1
Length = 650
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 301/625 (48%), Positives = 433/625 (69%), Gaps = 17/625 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V + ADNS++V D+GRGIP+D+
Sbjct: 35 MYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVDIQVK 94
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG SVVNALS L+V V+++G ++Q
Sbjct: 95 TGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQ 152
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAFLN
Sbjct: 153 EFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 208
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLA 239
L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +++A
Sbjct: 209 GLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+GE
Sbjct: 267 MQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I+ K
Sbjct: 326 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGSAK
Sbjct: 386 GILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY K++
Sbjct: 446 GRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQKLV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY----DD 534
I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y +
Sbjct: 505 IMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQE 564
Query: 535 AELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 593
+LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ VF
Sbjct: 565 DQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVF 624
Query: 594 SSLMGARVDTRKELIQNAANLVNLD 618
LMG RV+ R++ I+ A LD
Sbjct: 625 DMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P0DG04|GYRB_STRP3 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrB PE=3 SV=1
Length = 650
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 301/625 (48%), Positives = 433/625 (69%), Gaps = 17/625 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V + ADNS++V D+GRGIP+D+
Sbjct: 35 MYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVDIQVK 94
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG SVVNALS L+V V+++G ++Q
Sbjct: 95 TGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQ 152
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAFLN
Sbjct: 153 EFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 208
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLA 239
L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +++A
Sbjct: 209 GLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+GE
Sbjct: 267 MQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I+ K
Sbjct: 326 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGSAK
Sbjct: 386 GILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY K++
Sbjct: 446 GRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQKLV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY----DD 534
I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y +
Sbjct: 505 IMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQE 564
Query: 535 AELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 593
+LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ VF
Sbjct: 565 DQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVF 624
Query: 594 SSLMGARVDTRKELIQNAANLVNLD 618
LMG RV+ R++ I+ A LD
Sbjct: 625 DMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|D4GZ01|GYRB_HALVD DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM
3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 /
DS2) GN=gyrB PE=1 SV=1
Length = 639
Score = 580 bits (1495), Expect = e-164, Method: Compositional matrix adjust.
Identities = 311/615 (50%), Positives = 419/615 (68%), Gaps = 11/615 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYE++DN++DEA AG+ IEVAL D SVSV DNGRGIP+D H
Sbjct: 27 MYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHEDGSVSVTDNGRGIPVDTHEQ 86
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
++ ALE ++TVLHAGGKF S Y VSGGLHGVG+SVVNALS LEV V RDG +
Sbjct: 87 YDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVSVVNALSSELEVEVKRDGAVWTH 144
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ G+P V ++ + GT IRFWPD +F T +FD T+ R+RELAFLN
Sbjct: 145 RFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT-EFDFKTLENRLRELAFLNS 203
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I+L SD ++ + + F GG+ E+V++LN K LHD V+ + + +GI +++A
Sbjct: 204 GVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTALHDDVIYYDDESEGIEVEIA 259
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGE 298
+Q +D ++ +AN+I T +GGTH+ G K +LTR +N + D D +L GE
Sbjct: 260 MQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANTHDMLDDLDGDNLRGE 318
Query: 299 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 358
VREGLT +IS++ P+P+FEGQTKT+LGN EVR +V+ + L + E +PD +I+S
Sbjct: 319 DVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATAIIS 378
Query: 359 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 418
K++ A +A AAK+A +L R+KS L S+SLPGKLADC S P ESE+FIVEGDSAGGSAK
Sbjct: 379 KAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAESELFIVEGDSAGGSAK 438
Query: 419 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 478
QGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A+G GV G++F E RY ++
Sbjct: 439 QGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV-GDEFDIEKARYQRL 497
Query: 479 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 538
I++TDADVDGAHIRTLLLT YR+ + L + G +Y PPLY+V D+AE
Sbjct: 498 ILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERD 557
Query: 539 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 598
++ + +QRFKGLGEM P QLW+TT+NPE R+LK++ +EDAA A+ +F+ LMG
Sbjct: 558 RIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMG 617
Query: 599 ARVDTRKELIQNAAN 613
V RK+ I++ AN
Sbjct: 618 DAVGPRKQFIKDHAN 632
>sp|O29720|GYRB_ARCFU DNA gyrase subunit B OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=gyrB PE=3
SV=2
Length = 632
Score = 578 bits (1489), Expect = e-164, Method: Compositional matrix adjust.
Identities = 307/619 (49%), Positives = 421/619 (68%), Gaps = 18/619 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIG G RGLHHL++E++DNAVDEA AGY I+V+L D S SV DNGRGIP ++H
Sbjct: 30 MYIGGVGVRGLHHLLWEVVDNAVDEALAGYCDTIKVSLHKDGSASVEDNGRGIPTEMH-E 88
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
KSALE V+T LHAGGKF S Y VSGGLHGVG+SVVNALSE LEV V R+G Y+Q
Sbjct: 89 LGKSALEIVMTKLHAGGKF--SKKVYRVSGGLHGVGVSVVNALSEWLEVWVKRNGKIYYQ 146
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
KY RG + GT +RF PD+++F T +F + +A R++ELA+LN
Sbjct: 147 KYQRGSRSPEAGHRTEVLGETKEHGTTVRFKPDREIFETT-EFKYEIVAQRLKELAYLNR 205
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL 240
L I L E E+ + F G+ V+ LN ++KPLH+ + DG+++++A+
Sbjct: 206 GLKIILFDEREGKEET----FHFEDGIIGLVRSLNRNRKPLHEPIYIETTKDGVSVEVAI 261
Query: 241 QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHV 300
Q+ +D+ + + +AN+I T +GG+H+ G +A LTR +N GKK K ++G +
Sbjct: 262 QF-TDSDVENIQAFANNINTSEGGSHVVGFRAGLTRAVNEYGKKHL---KKFEPVTGVDI 317
Query: 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKS 360
REGLT +ISV+VP P+FEGQTKT+L N +V+ VV+ +V + +LE +P +++L+K
Sbjct: 318 REGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYSGVLRWLEENPAQAETLLNKF 377
Query: 361 LSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQG 420
+ KA AAKRA++LV++K+ L ++LPGKLADCSS PEE E+FIVEG+SAGGSAKQ
Sbjct: 378 ILNKKAREAAKRAKELVKRKNEL-ITTLPGKLADCSSKNPEERELFIVEGESAGGSAKQA 436
Query: 421 RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIII 480
RDRRFQAILP++GKI+NVE+ A + KN+EI+ +I A+G G+ G+DF RY +III
Sbjct: 437 RDRRFQAILPIKGKIINVEKAGMARVLKNDEIKAIISAIGAGI-GKDFDITKARYRRIII 495
Query: 481 LTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKV 540
+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY++++GK+ Y Y D ELK+
Sbjct: 496 MTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLYQIKKGKKSYYAYSDEELKRT 555
Query: 541 KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGAR 600
+QR+KGLGEM P QLWETT+NPE R+L Q+ +EDA A+ +FS LMG
Sbjct: 556 LEQVGGG---EVQRYKGLGEMNPQQLWETTMNPENRILIQVTLEDAKRADELFSILMGED 612
Query: 601 VDTRKELIQ-NAANLVNLD 618
V++R+ I ++ + NLD
Sbjct: 613 VESRRNFIMAHSKEVKNLD 631
>sp|P21558|GYRB_HALL2 DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 /
JCM 9276 / NCIMB 13854 / Aa 2.2) GN=gyrB PE=3 SV=1
Length = 639
Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust.
Identities = 309/615 (50%), Positives = 417/615 (67%), Gaps = 11/615 (1%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYE++DN++DEA AG+ IEVAL D SVSV DNGRGIP+ H
Sbjct: 27 MYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHEDGSVSVTDNGRGIPVGTHEQ 86
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
++ ALE ++TVLHAGGKF S Y VSGGLHGVG++VVNALS LEV V DG +
Sbjct: 87 YDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVTVVNALSSELEVEVKHDGAVWTH 144
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ G+P V ++ + GT IRFWPD +F T +FD T+ R+RELAFLN
Sbjct: 145 RFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT-EFDFKTLENRLRELAFLNS 203
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLA 239
+ I+L SD ++ + + F GG+ E+V++LN K LHD V+ + + +GI +++A
Sbjct: 204 GVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTALHDDVIYYDDESEGIEVEIA 259
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGE 298
+Q +D ++ +AN+I T +GGTH+ G K +LTR +N + D D +L GE
Sbjct: 260 MQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANSHDMLDDLDGDNLRGE 318
Query: 299 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 358
VREGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+ + L + E +PD +I+S
Sbjct: 319 DVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLGTFFEENPDTATAIIS 378
Query: 359 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 418
K++ A +A AAK+A +L R+KS L S+SLPGKLADC S P ESE+FIVEGDSAGGSAK
Sbjct: 379 KAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSESELFIVEGDSAGGSAK 438
Query: 419 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 478
QGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A+G GV G++F E RY ++
Sbjct: 439 QGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV-GDEFDIEKARYQRL 497
Query: 479 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 538
I++TDADVDGAHIRTLLLT YR+ + L + G +Y PPLY+V D+AE
Sbjct: 498 ILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRYRGNTYDAMDEAERD 557
Query: 539 KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMG 598
++ + +QRFKGLGEM P QLW+TT+NPE R+LK++ +EDAA A+ +F+ LMG
Sbjct: 558 RIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITVEDAAAADRMFNILMG 617
Query: 599 ARVDTRKELIQNAAN 613
V RK+ I++ AN
Sbjct: 618 DAVGPRKQFIKDHAN 632
>sp|P33769|GYRB_BORBU DNA gyrase subunit B OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrB PE=3 SV=4
Length = 634
Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust.
Identities = 301/626 (48%), Positives = 427/626 (68%), Gaps = 23/626 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGS GLHHLVYE++DN++DEA AG+ I+V + DN+++V DNGRGIP D+H
Sbjct: 23 MYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIINLDNTITVIDNGRGIPTDIHEE 82
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
SALE VLT LH+GGKF + Y VSGGLHGVG+SVVNALS LEV V RDG + Q
Sbjct: 83 EGISALELVLTKLHSGGKFNKGT--YKVSGGLHGVGISVVNALSSFLEVYVNRDGKIFRQ 140
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+S+G P T V V GT++ F D ++F T + ++ + + R++ELAFLN
Sbjct: 141 TFSKGIP----TSKVEVVGESSVTGTKVTFLADSEIFET-LDYNFDVLEKRLKELAFLND 195
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----VVGFRKDVDGITI 236
K+ I++ ED K + ++++F GG++ +V +L D K + GF DV +
Sbjct: 196 KIYISI--EDKRIGKEKSSKFYFEGGIKSFVDYLTNDSKAFQSEPYYIDGFINDV---IV 250
Query: 237 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 296
++ L+W +++YSD +L + N+I T +GGTH+ G ++ LT+ +N K SK K +L+
Sbjct: 251 NVGLKW-TESYSDNILSFVNNINTREGGTHVMGFRSGLTKAMNEAFKNSKISKKDIPNLT 309
Query: 297 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 356
G+ +EGLT +ISV+VP P+FEGQTK++LGN E+RK+V+ V E+L E + L+P +D+I
Sbjct: 310 GDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIVEVVVYEHLLEIINLNPLEIDTI 369
Query: 357 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 416
L K++ A +A AA++AR+ R+K+ S +LPGKLADC+S P E EI+IVEGDSAGGS
Sbjct: 370 LGKAIKAARAREAARKARESERKKNAFESLALPGKLADCTSKNPLEREIYIVEGDSAGGS 429
Query: 417 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 476
AK GR+R FQAILPL GK+LNVE+ E + N+++ +I +LG GV G+ F LRYH
Sbjct: 430 AKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFDITKLRYH 488
Query: 477 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 536
KIII+ DADVDG+HIRTLLL FF+RY + L + G IY+ +PPLYK++ ++ Y Y++ E
Sbjct: 489 KIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYIAMPPLYKIKYDNRIYYFYEEKE 548
Query: 537 LKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 593
+K S + N++ S+QR+KGLGEM P QLWETT++P +R ++ + I+DA EA +F
Sbjct: 549 KEKFLDSIETKNRNSI-SLQRYKGLGEMNPTQLWETTMDPARRKMRLMNIDDAIEAEKIF 607
Query: 594 SSLMGARVDTRKELI-QNAANLVNLD 618
+LMG V+ RKE I QNA N++NLD
Sbjct: 608 VTLMGDLVEPRKEFIEQNALNVINLD 633
>sp|O08399|GYRB_TREPA DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) GN=gyrB
PE=1 SV=1
Length = 637
Score = 565 bits (1455), Expect = e-160, Method: Compositional matrix adjust.
Identities = 313/629 (49%), Positives = 417/629 (66%), Gaps = 28/629 (4%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTGP GLHHLVYE++DN +DEA AGY I V L N V V DNGRGIP+D+HP
Sbjct: 25 MYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQGNVVRVEDNGRGIPVDVHPH 84
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
SALE VLT LHAGGKF S Y VSGGLHGVG+SVVNALS +EVTV+RDG EY+Q
Sbjct: 85 EGVSALEVVLTKLHAGGKFDKKS--YKVSGGLHGVGVSVVNALSLWVEVTVYRDGAEYYQ 142
Query: 121 KYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 177
K++ G P+ PV+ + +++GT IR+ D +F + +D + + R+RELAF
Sbjct: 143 KFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIFKETVAYDFDVLLTRLRELAF 195
Query: 178 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK-----KPLHDVVGFRKDVD 232
LN + I LR E K E+ F GG+ +V +LN K +PL+ + G + DV
Sbjct: 196 LNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRGKSVVPERPLY-IEGSKSDV- 251
Query: 233 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK- 291
+++ALQ+ D Y++ + + N I T +GGTH+EG K++LTR N KKS + K
Sbjct: 252 --LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKKSPKLAKKI 308
Query: 292 --DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 349
+ L GE VR GLT ++SV++P P+FEGQTKT+LGN EVR +VD V E LT Y E +
Sbjct: 309 EREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVRGIVDSLVGERLTLYFEQN 368
Query: 350 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 409
P VL IL KS++ +A LAA+RA++ R+KS + S LPGKLADCS P + E++IVE
Sbjct: 369 PGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLPGKLADCSLKDPAKCEVYIVE 428
Query: 410 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 469
GDSAGGSAK+GRD + QAILPL GK+LNVE+ + NE++Q +I LG GV G+DF
Sbjct: 429 GDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHNEKLQPIIATLGTGV-GKDFD 487
Query: 470 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 529
+RYHK+II+ DADVDG+HIRTLLLTFF+RY + + G +Y+ +PPLY++ K+
Sbjct: 488 LTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRIAWSKKEL 547
Query: 530 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 589
Y Y D E + S + ++QR+KGLGEM QLWETT+NP +R + Q+V+ DA EA
Sbjct: 548 YVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVVLSDAVEA 607
Query: 590 NVVFSSLMGARVDTRKELIQNAANLVNLD 618
+ VFS+LMG V+ R++ I+ A LD
Sbjct: 608 DRVFSTLMGEDVEPRRKFIEENAIYARLD 636
>sp|O87545|GYRB_TREDE DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=gyrB PE=3 SV=1
Length = 638
Score = 562 bits (1449), Expect = e-159, Method: Compositional matrix adjust.
Identities = 301/623 (48%), Positives = 417/623 (66%), Gaps = 16/623 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTGP GLHHLVYE++DN +DEA AG+ I V L ++ V V DNGRGIP+D+HP
Sbjct: 26 MYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDKILVVLEPNDIVRVEDNGRGIPVDIHPT 85
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
SALE VLT LHAGGKF S Y VSGGLHGVG+SVVNALS +E V++DG E++
Sbjct: 86 EKISALELVLTRLHAGGKFDKGS--YKVSGGLHGVGVSVVNALSVWMEAKVYKDGFEHYA 143
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
K+ +G ++ V + ++ GT IR+ D +FT ++ +A R+RELAFLN
Sbjct: 144 KFEKG----SILEPVKKIGETEKSGTVIRWAVDPSIFTETTVYNFEVLATRLRELAFLNS 199
Query: 181 KLTIALRKED-SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITIDL 238
K++I +R E S P++ + F GG+ ++V +LN K+ V + + I ++
Sbjct: 200 KISITMRDERLSTPKEVTFA---FEGGISQFVSYLNESKQVFPKSPVFIEGEKNDILCEV 256
Query: 239 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK-SKTVK--DKDISL 295
A+Q+ +D Y++ +L + N I T +GGTH+EG K +LTR +N KK K VK DK+ L
Sbjct: 257 AIQY-NDGYNENLLSFVNDINTREGGTHLEGFKTALTRVMNDFLKKYPKLVKKMDKEEKL 315
Query: 296 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDS 355
+GE VR GLT I+SV+VP P+FEGQTKT+LGN +VR +VD V E LT + E +P+ ++
Sbjct: 316 TGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIVDSFVNEKLTLFFEQNPNEVEK 375
Query: 356 ILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 415
+L K ++ A +AA+RA++ R+KS L S LPGKLADCS PE E++IVEGDSAGG
Sbjct: 376 VLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLADCSLKDPESCEVYIVEGDSAGG 435
Query: 416 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 475
SAK+GRD + QAILPL GK+LNVE+ + NE++Q +I LG G+ G+DF E LRY
Sbjct: 436 SAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEKLQPIIATLGTGI-GKDFNIEKLRY 494
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDA 535
HK+II+ DADVDG+HIRTLLLTFF+RY + ++G +Y+ +PPLYK+ K+ Y Y+D
Sbjct: 495 HKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHVYLAMPPLYKISHNKKEWYVYNDD 554
Query: 536 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 595
E V ++QR+KGLGEM QLWETT++P +R + ++ + DA EA+ +FS+
Sbjct: 555 ERDSVLDQIGRGNNAAVQRYKGLGEMDGTQLWETTMDPARRKMMRVTLPDAVEADRIFST 614
Query: 596 LMGARVDTRKELIQNAANLVNLD 618
LMG V+ R++ I+ A NLD
Sbjct: 615 LMGEEVEPRRKFIEENAVYANLD 637
>sp|P34031|GYRB_SPICI DNA gyrase subunit B OS=Spiroplasma citri GN=gyrB PE=3 SV=1
Length = 640
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 295/626 (47%), Positives = 417/626 (66%), Gaps = 19/626 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIG+T RGLHHLV+EI+DN++DE A +A+ I++ L D S++V DNGRGIPI++HP
Sbjct: 25 MYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKIILNKDESITVIDNGRGIPIEIHPK 84
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T S LETV T+LHAGGKF S+ Y +SGGLHGVG SVVNALS+ L+V V ++ +Y
Sbjct: 85 TKVSTLETVFTILHAGGKF--DSNTYKISGGLHGVGASVVNALSKYLKVEVRKNNKKYVM 142
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ G + T + V S GT + F PD+++F F +TI RI++L FLN
Sbjct: 143 EFHNGGQILT---PIKEVGSTSETGTTVTFLPDEKIFKETTIFSFSTIQNRIKQLVFLNK 199
Query: 181 KLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLN-TDKKPLHDVVGFRKDVDGITI 236
L I+L R+ED EK Y F G+++YV LN T PL+DV D I +
Sbjct: 200 GLEISLVDLREEDE--EKTVL--YQFNNGIKDYVLELNKTIGTPLNDVFYVEGIEDNIVV 255
Query: 237 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK--SKTVKDKDIS 294
+ LQ+ +D YS+ + + N+I T +GGTH EG + ++ R +N+ K +K K +
Sbjct: 256 EFGLQY-NDNYSENIFSFCNNINTHEGGTHEEGARLAIVREINNYFKNQINKNNKGNEDK 314
Query: 295 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 354
+ + ++EG+T IIS+R P P++EGQT +L N EV+K+V V + L+ YL +P+
Sbjct: 315 FTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNIVGKGLSSYLLENPEDAK 374
Query: 355 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAG 414
I+ K +LKA + A+RA+++ R+K V+ S SLPGKL+DC + + +E++IVEGDSAG
Sbjct: 375 KIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCETKDAKIAELYIVEGDSAG 434
Query: 415 GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALR 474
GSAK GR+R+FQAILPLRGKILNVE+ + +++N EI ++I ALG G+K ++F + LR
Sbjct: 435 GSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIITALGAGIK-DNFNDKKLR 493
Query: 475 YHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCY-D 533
Y K+II+TDADVDGAHIR LLLTFFYRY K L + G IY+ PPLYKVE Q++Y Y D
Sbjct: 494 YQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPPLYKVENSNQIRYVYSD 553
Query: 534 DAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 593
+ + N Y+IQR+KGLGEM P QLWETT++PE+R+L ++ + +A EAN++
Sbjct: 554 NELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWETTMDPERRLLLKVSVNNAFEANLIC 613
Query: 594 SSLMGARVDTRKELI-QNAANLVNLD 618
+ LMG V+ RK+ I +NA + NLD
Sbjct: 614 NELMGENVEPRKKFIRENAKYVKNLD 639
>sp|Q9A0L0|GYRB_STRP1 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M1 GN=gyrB
PE=3 SV=1
Length = 650
Score = 551 bits (1419), Expect = e-156, Method: Compositional matrix adjust.
Identities = 298/625 (47%), Positives = 430/625 (68%), Gaps = 17/625 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V + ADNS++V D+GRGIP+D+
Sbjct: 35 MYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVDIQAK 94
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T + A+ETV TVLHAGGK GY VSGGLHGVG SVVNALS L+V V+++G ++Q
Sbjct: 95 TGRPAVETVFTVLHAGGK--FGGGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQ 152
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAFLN
Sbjct: 153 EFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 208
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLA 239
L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +++A
Sbjct: 209 GLKISITDKRSGMEQEEH--FLYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+GE
Sbjct: 267 MQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I+ K
Sbjct: 326 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGSAK
Sbjct: 386 GILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY K++
Sbjct: 446 GRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQKLV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY----DD 534
I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y +
Sbjct: 505 IMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQE 564
Query: 535 AELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 593
+LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ VF
Sbjct: 565 DQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVF 624
Query: 594 SSLMGARVDTRKELIQNAANLVNLD 618
LMG RV+ R++ I+ A LD
Sbjct: 625 DMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q8P1M4|GYRB_STRP8 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrB PE=3 SV=1
Length = 650
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 298/625 (47%), Positives = 430/625 (68%), Gaps = 17/625 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V + ADNS++V D+GRGIP+D+
Sbjct: 35 MYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVDIQAK 94
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T + A+ETV TVLHAGGK GY VSGGLHGVG SVVNALS L+V V+++G ++Q
Sbjct: 95 TGRPAVETVFTVLHAGGK--FGGGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQ 152
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAFLN
Sbjct: 153 EFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 208
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLA 239
L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +++A
Sbjct: 209 GLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+GE
Sbjct: 267 MQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I+ K
Sbjct: 326 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGSAK
Sbjct: 386 GILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY K++
Sbjct: 446 GRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQKLV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY----DD 534
I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y +
Sbjct: 505 IMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQE 564
Query: 535 AELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 593
+LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ VF
Sbjct: 565 DQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVF 624
Query: 594 SSLMGARVDTRKELIQNAANLVNLD 618
LMG RV+ R++ I+ A LD
Sbjct: 625 DMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q5XD05|GYRB_STRP6 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrB PE=3 SV=1
Length = 650
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 298/625 (47%), Positives = 430/625 (68%), Gaps = 17/625 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V + ADNS++V D+GRGIP+D+
Sbjct: 35 MYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVDIQAK 94
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T + A+ETV TVLHAGGK GY VSGGLHGVG SVVNALS L+V V+++G ++Q
Sbjct: 95 TGRPAVETVFTVLHAGGK--FGGGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIHYQ 152
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
++ RG V L + + D GT + F PD ++FT QFD++ +A RI+ELAFLN
Sbjct: 153 EFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRIQELAFLNR 208
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLA 239
L I++ + S E+ ++ + + GG+ YV++LN K + + + +++GI +++A
Sbjct: 209 GLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKKDVIFETPIYTDGELEGIAVEVA 266
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR +N KK+K +K+ + +L+GE
Sbjct: 267 MQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAKKNKILKENEDNLTGED 325
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +L +P V I+ K
Sbjct: 326 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEK 385
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRAR++ R+KS L S+LPGKLADCSS ++E+FIVEGDSAGGSAK
Sbjct: 386 GILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKS 445
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G DF RY K++
Sbjct: 446 GRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF-GADFDVSKARYQKLV 504
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV-QYCY----DD 534
I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ PP+Y V+ G ++ +Y +
Sbjct: 505 IMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVGSEIKEYIQPGIDQE 564
Query: 535 AELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVF 593
+LK + + ++QR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ VF
Sbjct: 565 DQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLMARVTVDDAAEADKVF 624
Query: 594 SSLMGARVDTRKELIQNAANLVNLD 618
LMG RV+ R++ I+ A LD
Sbjct: 625 DMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P22447|GYRB_MYCPN DNA gyrase subunit B OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=gyrB PE=1 SV=1
Length = 650
Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 291/631 (46%), Positives = 412/631 (65%), Gaps = 24/631 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVS-VADNGRGIPIDLHP 59
MYIGSTG GLHH+++EI+DN++DEA G+AS +++ L DN V+ V D+GRGIP+D+HP
Sbjct: 30 MYIGSTGEEGLHHMIWEIIDNSIDEAMGGFASTVKLTL-KDNFVTIVEDDGRGIPVDIHP 88
Query: 60 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYH 119
TN+S +ETV TVLHAGGKF S Y VSGGLHGVG SVVNALS S +V V R+ +Y
Sbjct: 89 KTNRSTVETVFTVLHAGGKFDNDS--YKVSGGLHGVGASVVNALSSSFKVWVAREHQQYF 146
Query: 120 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
+ G V + D + GT++ F PD V + + IA R+++LAFLN
Sbjct: 147 LAFHNGGEVIGDLVNEGKCDKE--HGTKVEFVPDFTVMEKS-DYKQTVIASRLQQLAFLN 203
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG------ 233
+ I D + Q + + GGL +Y+ LN +K+PL + + F + D
Sbjct: 204 KGIQIDFV--DERRQNPQSFSWKYDGGLVQYIHHLNNEKEPLFEDIIFGEKTDTVKSVSR 261
Query: 234 -----ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTV 288
I +++A Q+ + Y+ ++ + N+I T +GGTH+EG + +L + +N ++K +
Sbjct: 262 DESYTIKVEVAFQY-NKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFL 320
Query: 289 KDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLEL 348
K+ D ++ + + EGLT IIS++ PNP++EGQTK +LGN EVR +V+ V E ++
Sbjct: 321 KETDEKITRDDICEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSIVSEIFERFMLE 380
Query: 349 HPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIV 408
+P ++I+ K+L A +A ++ AR+L R+KS S SLPGKLADC++ P SE++IV
Sbjct: 381 NPQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIV 440
Query: 409 EGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDF 468
EGDSAGG+AK GRDR FQAILPLRGKILNVE+ ++ N EI L+ A+G G+K DF
Sbjct: 441 EGDSAGGTAKTGRDRYFQAILPLRGKILNVEKSHFEQIFNNVEISALVMAVGCGIK-PDF 499
Query: 469 KKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV 528
+ E LRY+KIII+TDADVDGAHIRTLLLTFF+R+ L ++G IY+ PPLYKV +
Sbjct: 500 ELEKLRYNKIIIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIYIAQPPLYKVSYSNKD 559
Query: 529 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 588
Y D +L++ K P N Y++QR+KGLGEM +QLWETT++P+ R L ++ +EDA+
Sbjct: 560 LYMQTDVQLEEWKQQHP-NLKYNLQRYKGLGEMDAIQLWETTMDPKVRTLLKVTVEDASI 618
Query: 589 ANVVFSSLMGARVDTRKELI-QNAANLVNLD 618
A+ FS LMG V R+E I QNA N+ N+D
Sbjct: 619 ADKAFSLLMGDEVPPRREFIEQNARNVKNID 649
>sp|Q9L7L3|GYRB_MYCPA DNA gyrase subunit B OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=gyrB PE=3 SV=1
Length = 677
Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/654 (46%), Positives = 423/654 (64%), Gaps = 45/654 (6%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHL++E++DN+VDEA AGYA ++V +L D SV VADNGRGIP+ +H A
Sbjct: 32 MYIGSTGERGLHHLIWEVVDNSVDEAMAGYADRVDVRILDDGSVEVADNGRGIPVAMH-A 90
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T ++ V+T LHAGGKFGG +SGY+VSGGLHGVG+SVVNALS LEV + RDG E+ Q
Sbjct: 91 TGAPTVDVVMTQLHAGGKFGGENSGYNVSGGLHGVGVSVVNALSTRLEVNIARDGYEWSQ 150
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y P T ++ R GT IRFW D +F T ++D T+A R++E+AFLN
Sbjct: 151 YYDHAVPGTLKQG-----EATKRTGTTIRFWADPDIFETT-EYDFETVARRLQEMAFLNK 204
Query: 181 KLTIALR----------------------------KEDSDPEKNQYNEYFFAGGLEEYVQ 212
LTI L E + P K ++ + + GGL ++V+
Sbjct: 205 GLTINLTDERVTNEEVVDEVVSDTADAPKSAQEKAAESAAPHKVKHRTFHYPGGLVDFVK 264
Query: 213 WLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 271
+N K P+H ++ F G +++A+QW + YS+++ +AN+I T +GGTH EG +
Sbjct: 265 HINRTKNPIHQSIIDFGGKGPGHEVEIAMQW-NGGYSESVHTFANTINTHEGGTHEEGFR 323
Query: 272 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 331
++LT +N K K +KDKD +L+G+ +REGL +ISV+V P+FEGQTKT+LGN EV+
Sbjct: 324 SALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVK 383
Query: 332 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGK 391
V + E LT + E +P I++K++S+ +A +AA++AR+LVR+KS LPGK
Sbjct: 384 SFVQKVCNEQLTHWFEANPADAKVIVNKAVSSAQARIAARKARELVRRKSATDLGGLPGK 443
Query: 392 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 451
LADC ST P +SE+++VEGDSAGGSAK GRD FQAILPLRGKI+NVE+ + KN E
Sbjct: 444 LADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTE 503
Query: 452 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 511
+Q +I ALG G+ E F LRYHKI+++ DADVDG HI TLLLT +R+ + L + G
Sbjct: 504 VQAIITALGTGIHDE-FDITKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEHGH 562
Query: 512 IYVGVPPLYKVE-RGKQVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQ 565
+++ PPLYK++ + ++ Y D E +K+ N IQR+KGLGEM +
Sbjct: 563 VFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKDDGIQRYKGLGEMDAKE 622
Query: 566 LWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 618
LWETT++P R+L+Q+ ++DAA A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 623 LWETTMDPTVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLD 676
>sp|Q9ZFK1|GYRB_BORHE DNA gyrase subunit B OS=Borrelia hermsii GN=gyrB PE=3 SV=1
Length = 634
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/622 (47%), Positives = 415/622 (66%), Gaps = 15/622 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGS GLHHLVYE++DN++DEA AG+ IEV + +DNSV+V DNGRGIP D+H
Sbjct: 23 MYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVINSDNSVTVNDNGRGIPTDVHEE 82
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
SALE VLT LH+GGKF + Y VSGGLHGVG+SVVNALS L V V RDG + Q
Sbjct: 83 EGISALELVLTKLHSGGKFNKGT--YKVSGGLHGVGISVVNALSSFLAVIVSRDGKLFKQ 140
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
YSRG P T V + +GT++ F D ++F T +++D T++ R+RELAFLN
Sbjct: 141 TYSRGIP----TSEVDIIGVSSARGTKVTFLADSEIFET-LEYDFETLSKRLRELAFLND 195
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGF-RKDVDGITIDLA 239
K+ I++ ED K ++ E++F GG++ +V ++ + K + + F D + + +
Sbjct: 196 KIRISI--EDRRSGKEKFLEFYFEGGIKAFVDYITNNSKNIQNEPYFIEGSCDDVIVSVG 253
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
L+W ++ YSD +L + N+I T +GGTH+ G K+ + ++ + SK K SL+ +
Sbjct: 254 LKW-TEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAMSEAFRDSKISKKDVPSLTLDD 312
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
+EGLT +IS+++P P+FEGQTK +LGN V+K+V+ V + L + ++ + +D IL+K
Sbjct: 313 FKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIVHDGLLKVIDDNLLEVDIILNK 372
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
++ A +A AA++AR+ R+KS S +LPGKLADC+S P E EI+IVEGDSAGGSAK
Sbjct: 373 AIRAARAREAARKARESERKKSAFESLALPGKLADCASKNPAEREIYIVEGDSAGGSAKM 432
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GRDR QAILPL GK+LNVE+ E + N+++ +I +LG GV G+ F E LRYHKII
Sbjct: 433 GRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIASLGAGV-GKTFYIEKLRYHKII 491
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
I+ DADVDG+HIRTLLLTFF+RY + L + G +Y+ +PPLYK++ + Y YDD E +
Sbjct: 492 IMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPPLYKLKYENREHYFYDDLEKEA 551
Query: 540 VKSSFPSNAL--YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 597
S + S+QR+KGLGEM P QLWETT+NP R +K + I DA +A +F +LM
Sbjct: 552 FLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATRKMKLIKINDAIQAEKIFVTLM 611
Query: 598 GARVDTRKELI-QNAANLVNLD 618
G V+ R+E I QNA ++VNLD
Sbjct: 612 GDDVEPRREFIEQNALDVVNLD 633
>sp|P47720|GYRB_MYCGA DNA gyrase subunit B OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrB PE=3 SV=2
Length = 648
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 293/631 (46%), Positives = 416/631 (65%), Gaps = 25/631 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST +GLHH+++EI+DN+VDE AGY + +++ L + V V D+GRGIP+D+H
Sbjct: 29 MYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTTVKLTLKDNYLVEVEDDGRGIPVDIHEK 88
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRD-GMEYH 119
TNKS +ETVLT+LHAGGKF S YS+SGGLHGVG SVVNALS S +V V RD + Y
Sbjct: 89 TNKSTVETVLTILHAGGKF--DSDTYSMSGGLHGVGASVVNALSSSFKVWVNRDYKIHYI 146
Query: 120 QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
+ G P+ L ++ DSK +QGTRI+F PD + ++D IA RI +LAFLN
Sbjct: 147 EFKDGGVPLKPL--EIIGTDSK-KQGTRIQFVPDFSIME-QFEYDETIIADRIEQLAFLN 202
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI--- 236
+ E +D + Q E+ + GG+++YV+ LN K+P+ + + + +T+
Sbjct: 203 KGIKFIFNDERTDKKTKQ--EWLYEGGIKQYVENLNASKEPIIPQIIYGEKKTKVTLPKR 260
Query: 237 --------DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTV 288
++A Q+ ++ Y ++ + N+I T GGTH EG K +L + +N + K +
Sbjct: 261 NLEVTMLLEVAFQY-TNGYYNSTYSFCNNIHTNQGGTHEEGFKNALYKIINRYALEKKFI 319
Query: 289 KDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLEL 348
K+ D +S E + EGLT IIS++ P+++GQTK RLGN EVR+ + V E L +
Sbjct: 320 KETDGKISKEDLSEGLTAIISIKHSEPQYQGQTKDRLGNTEVREFTNSVVSELLERFFLE 379
Query: 349 HPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIV 408
+P+ I +K++SA+ + ++ A + R KS S+SLPGKLADC++ E SE++IV
Sbjct: 380 NPEEAAKITAKAVSAMFSRKRSEAALESAR-KSPFESASLPGKLADCTTKDMEISELYIV 438
Query: 409 EGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDF 468
EGDSAGGSAK GRDR +QAILPLRGK+LNVE+ + ++KNEEI+ LI A+G GV E F
Sbjct: 439 EGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKANHEKIFKNEEIRTLITAIGAGVNPE-F 497
Query: 469 KKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQV 528
+ +RY+KIII+TDADVDGAHIR LLLTFF+R+ L ++G +Y+ PPLY+V KQ
Sbjct: 498 SLDKIRYNKIIIMTDADVDGAHIRILLLTFFFRHMFPLIEKGHVYIAQPPLYRVSYNKQN 557
Query: 529 QYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAE 588
+Y Y DA+L++ K+ P N Y +QR+KGLGEM VQLWETT++PE+R L ++ I DAA
Sbjct: 558 KYIYSDAQLEEWKNQNP-NVRYELQRYKGLGEMDDVQLWETTMDPEKRTLLKVSINDAAN 616
Query: 589 ANVVFSSLMGARVDTRKELIQ-NAANLVNLD 618
A+ FS LMG V R++ I+ NA ++ N+D
Sbjct: 617 ADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 647
>sp|P47249|GYRB_MYCGE DNA gyrase subunit B OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=gyrB PE=3 SV=1
Length = 650
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/630 (45%), Positives = 412/630 (65%), Gaps = 22/630 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG GLHH+++EI+DN++DEA G+AS +++ L + V D+GRGIP+D+HP
Sbjct: 30 MYIGSTGEEGLHHMIWEIVDNSIDEAMGGFASFVKLTLEDNFVTRVEDDGRGIPVDIHPK 89
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
TN+S +ETV TVLHAGGKF S Y VSGGLHGVG SVVNALS S +V V+R +Y
Sbjct: 90 TNRSTVETVFTVLHAGGKFDNDS--YKVSGGLHGVGASVVNALSSSFKVWVFRQNKKYFL 147
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+S G V + V +S+ GT + F PD V + + I R+++LAFLN
Sbjct: 148 SFSDGGKV--IGDLVQEGNSEKEHGTIVEFVPDFSVMEKS-DYKQTVIVSRLQQLAFLNK 204
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD----------VVGFRKD 230
+ I D+ + Q + + GGL EY+ LN +K+PL + V +D
Sbjct: 205 GIRIDFV--DNRKQNPQSFSWKYDGGLVEYIHHLNNEKEPLFNEVIADEKTETVKAVNRD 262
Query: 231 VD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 289
+ + +++A Q+ + Y+ ++ + N+I T +GGTH+EG + +L + +N ++K +K
Sbjct: 263 ENYTVKVEVAFQY-NKTYNQSIFSFCNNINTTEGGTHVEGFRNALVKIINRFAVENKFLK 321
Query: 290 DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELH 349
D D ++ + V EGLT IIS++ PNP++EGQTK +LGN EVR +V+ V E ++ +
Sbjct: 322 DSDEKINRDDVCEGLTAIISIKHPNPQYEGQTKKKLGNTEVRPLVNSVVSEIFERFMLEN 381
Query: 350 PDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVE 409
P ++I+ K+L A +A ++ AR+L R+KS S SLPGKLADC++ P SE++IVE
Sbjct: 382 PQEANAIIRKTLLAQEARRRSQEARELTRRKSPFDSGSLPGKLADCTTRDPSISELYIVE 441
Query: 410 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 469
GDSAGG+AK GRDR FQAILPLRGKILNVE+ + ++ N EI L+ A+G G+K DF+
Sbjct: 442 GDSAGGTAKTGRDRYFQAILPLRGKILNVEKSNFEQIFNNAEISALVMAIGCGIK-PDFE 500
Query: 470 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQ 529
E LRY KI+I+TDADVDGAHIRTLLLTFF+R+ L ++G I++ PPLYKV +
Sbjct: 501 LEKLRYSKIVIMTDADVDGAHIRTLLLTFFFRFMYPLVEQGNIFIAQPPLYKVSYSHKDL 560
Query: 530 YCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEA 589
Y + D +L++ KS P N + +QR+KGLGEM +QLWETT++P+ R L ++ +EDA+ A
Sbjct: 561 YMHTDVQLEQWKSQNP-NVKFGLQRYKGLGEMDALQLWETTMDPKVRTLLKVTVEDASIA 619
Query: 590 NVVFSSLMGARVDTRKELIQ-NAANLVNLD 618
+ FS LMG V R+E I+ NA ++ N+D
Sbjct: 620 DKAFSLLMGDEVPPRREFIEKNARSVKNID 649
>sp|Q59192|PARE_BACSU DNA topoisomerase 4 subunit B OS=Bacillus subtilis (strain 168)
GN=parE PE=3 SV=2
Length = 655
Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust.
Identities = 292/618 (47%), Positives = 396/618 (64%), Gaps = 25/618 (4%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYEI+DN+VDE AG+ +I V + DNS+SV D GRG+P +H
Sbjct: 29 MYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHKDNSISVQDRGRGMPTGMHK- 87
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
K E +LTVLHAGGKFG GY SGGLHGVG SVVNALSE L VT+ RDG Y Q
Sbjct: 88 LGKPTPEVILTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLTVTIERDGFVYQQ 145
Query: 121 KYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
++ G KPVT+L + + GT F PD +F+T ++ T++ R+RE AFL
Sbjct: 146 RFENGGKPVTSLE----KIGKTKKTGTLTHFKPDPTMFSTTT-YNFETLSERLRESAFLL 200
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 239
L I L E +D Q +++ G+E +V +LN +K L +VV F + I +D A
Sbjct: 201 KGLKIELIDERND----QREVFYYENGIEAFVAYLNEEKDVLSEVVSFEGEHHSIEVDFA 256
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
Q+ +D YS+ +L + N++RT DGGTH G K ++TR N +K +K+KD +L G
Sbjct: 257 FQF-NDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFNEYARKVALLKEKDKNLEGTD 315
Query: 300 VREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
+REGL+ IISVR+P +FEGQTK +LG E R VD V E L +LE + D ++
Sbjct: 316 IREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAIVSEQLAYFLEENRDTATLLV 375
Query: 358 SKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 415
K++ A +A AA++AR+ R +K ++L GKL S P ++E+++VEGDSAGG
Sbjct: 376 KKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPAGSRNPAKNELYLVEGDSAGG 435
Query: 416 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 475
SAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +I A+G GV G DF + + Y
Sbjct: 436 SAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTIIHAIGGGV-GADFSIDDINY 494
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYC 531
KIII+TDAD DGAHI+ LLLTFFYRY K L + G +++ +PPLYKV +G ++Y
Sbjct: 495 DKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIALPPLYKVSKGSGKKEIIEYA 554
Query: 532 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 591
+ D E+ V Y+IQR+KGLGEM QLWETT+NPE R L ++ I+DAA
Sbjct: 555 WSDEEMGDVLKKVGKG--YTIQRYKGLGEMNADQLWETTMNPESRTLVRVKIDDAARVER 612
Query: 592 VFSSLMGARVDTRKELIQ 609
++LMG +V+ R++ I+
Sbjct: 613 RVTTLMGDKVEPRRKWIE 630
>sp|O67137|GYRB_AQUAE DNA gyrase subunit B OS=Aquifex aeolicus (strain VF5) GN=gyrB PE=3
SV=1
Length = 792
Score = 540 bits (1390), Expect = e-152, Method: Compositional matrix adjust.
Identities = 275/540 (50%), Positives = 377/540 (69%), Gaps = 16/540 (2%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIG G RGLHHL++EILDNAVDEA AGYA NI V + DNSV+V D+GRGIP+D+HP
Sbjct: 32 MYIGDIGERGLHHLIWEILDNAVDEAVAGYARNISVTIHRDNSVTVEDDGRGIPVDIHPE 91
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T K A+E V T+L AGGKF Y+ SGGLHGVG SVVNALSE L V V+RDG Y
Sbjct: 92 TGKPAVEMVFTMLGAGGKF--EKKVYTYSGGLHGVGASVVNALSEWLIVEVYRDGKIYRM 149
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELAFLN 179
+ RG+ V L HV V ++GT++ F PD ++F TT I+FD + R+RELA+LN
Sbjct: 150 AFKRGEVVEPL--HV--VGETKKRGTKVSFKPDPEIFETTEIKFD--IVEKRVRELAYLN 203
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL-HDVVGFRKDVDGITIDL 238
P++ L +D ++ Y F G+EE V++LN K+PL D++ + + +G+ +D+
Sbjct: 204 PEVKFEL----TDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIRIQGEKEGVIVDI 259
Query: 239 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 298
A Q+ D Y + + + N+I+T++GGTH+ G ++ L++ + + + K K+ S +GE
Sbjct: 260 AFQYVKD-YKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLKLAKELKKSFTGE 318
Query: 299 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 358
VREGLT +++ +VPNP+FEGQTKT+LGN V+++V+ ++LT Y E DVL +I+
Sbjct: 319 DVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYFEKKRDVLKAIVE 378
Query: 359 KSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 418
K++ A A AAK+A++LVR+KS L LPGKLADCS T P + EIF+VEGDSAGGSAK
Sbjct: 379 KAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIFLVEGDSAGGSAK 438
Query: 419 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 478
Q RDRR+QAILPLRGKI+NVE+ + N+EI+ ++ ALG G+ GED + LRYHKI
Sbjct: 439 QARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGI-GEDLDLKKLRYHKI 497
Query: 479 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELK 538
I++TDADVDG+HIRTLLLTFFYR+ L +EG +Y+ PPLY+V++GK+ Y DD E +
Sbjct: 498 ILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKKEIYIKDDKEFE 557
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 551 SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQN 610
+QR+KGLGEM P QLWETT+NP+ R LK++ IEDAAEA+ +F+ LMG +V+ R+E I+
Sbjct: 723 EVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKIEDAAEADRIFTILMGEQVEPRREFIEA 782
Query: 611 AANLVNLDHLDI 622
A V HLD+
Sbjct: 783 YAKEVK--HLDV 792
>sp|P50074|GYRBR_STRSH DNA gyrase subunit B, novobiocin-resistant OS=Streptomyces
spheroides GN=gyrBR PE=2 SV=1
Length = 677
Score = 539 bits (1388), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/644 (47%), Positives = 413/644 (64%), Gaps = 34/644 (5%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHLV E++DN+VDEA AG A I+V +LAD V V DNGRGIP+ +HP
Sbjct: 46 MYIGSTGERGLHHLVQELVDNSVDEALAGVADRIDVTVLADGGVRVVDNGRGIPVGMHPV 105
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ A+E VLTVLHAGGKFGG G S LHGVGLSVVNALS L +W DG + Q
Sbjct: 106 EKRPAVEVVLTVLHAGGKFGGGGYGVSGG--LHGVGLSVVNALSTRLSAEIWTDGHRWTQ 163
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y G P L H ++ R GT + FW D +F T ++ T+A R +E+AFLN
Sbjct: 164 DYRDGAPTAPLARH----EATSRTGTSLTFWADGDIFETT-EYSFETLARRHQEMAFLNG 218
Query: 181 KLTIALRKE-------------DSDPEKNQYNEYFFAGGLEEYVQWLNTDK-KPLHDVVG 226
LT+ L E DSDP + Y + GG+ ++V LN K +P H V
Sbjct: 219 GLTLTLTDERSSARATAAVDEADSDPTAKTVS-YRYDGGITDFVVHLNARKGEPAHPSVI 277
Query: 227 FRKDVDG---ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGK 283
D ++ ++ALQW Y+D++ YAN+I T +GGTH EG + +LT +N +
Sbjct: 278 TIAAEDTERLLSAEIALQWNGQ-YTDSVYSYANAIHTHEGGTHEEGFRTALTTVVNRYAR 336
Query: 284 KSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLT 343
+ + ++DKD +LSGE +REGLT IISV V P+FEGQTKT+LGN EVR ++ + V E+L
Sbjct: 337 EKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLGNTEVRTLLQKIVHEHLA 396
Query: 344 EYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEES 403
++ + +P+ I+ K++ A A +AA++ARDL R+K +L +++LPGKL+DC S P S
Sbjct: 397 DWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETAALPGKLSDCQSNDPATS 456
Query: 404 EIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGV 463
EIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+ + +N+E Q LI A G GV
Sbjct: 457 EIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKVLQNQENQALISAFGTGV 516
Query: 464 KGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE 523
EDF LRYHKII++ DADVDG HI TLLLTF +R+ + L +EG +++ PPLYK++
Sbjct: 517 H-EDFDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLVEEGHVHLSRPPLYKIK 575
Query: 524 RGKQ-VQYCYDDAE----LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML 578
++ V+Y Y D E L++ + SIQRFKGLGEM +L TT++P+ R+L
Sbjct: 576 WSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKGLGEMNAEELRVTTMDPDHRVL 635
Query: 579 KQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 622
Q+ ++DAA A+ +FS LMG V+ R+ IQ A V LDI
Sbjct: 636 GQVTLDDAAFADDLFSVLMGEDVEARRHFIQRNAQDVRF--LDI 677
>sp|P0A4M0|GYRB_STRR6 DNA gyrase subunit B OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrB PE=3 SV=1
Length = 648
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/626 (47%), Positives = 423/626 (67%), Gaps = 19/626 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V + D+S++V D+GRGIP+D+
Sbjct: 33 MYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPVDIQEK 92
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T + A+ETV TVLHAGGKFGG S LHGVG SVVNALS L+V V ++G ++Q
Sbjct: 93 TGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSTQLDVHVHKNGKIHYQ 150
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+Y RG V L V D+ GT + F PD ++FT FD + + RI+ELAFLN
Sbjct: 151 EYRRGHVVADLEI----VGDTDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNR 206
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLA 239
L I++ + E+ ++ Y + GG+ YV+++N +K + D + ++D IT+++A
Sbjct: 207 GLQISITDKRQGLEQTKH--YHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITVEVA 264
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ + Y + ++ +AN+I T +GGTH +G + +LTR +N +K+K +KD + +L+GE
Sbjct: 265 MQYTT-GYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGED 323
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P + I+ K
Sbjct: 324 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEK 383
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGSAK
Sbjct: 384 GILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKS 443
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F RY K++
Sbjct: 444 GRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKARYQKLV 502
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
++TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +++ ++
Sbjct: 503 LMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQE 562
Query: 540 VKSSFPSNALYS-------IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 592
+K + A YS IQR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ +
Sbjct: 563 IKLQ-EALARYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKI 621
Query: 593 FSSLMGARVDTRKELIQNAANLVNLD 618
F LMG RV+ R+E I+ A LD
Sbjct: 622 FDMLMGDRVEPRREFIEENAVYSTLD 647
>sp|P0A4L9|GYRB_STRPN DNA gyrase subunit B OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=gyrB PE=3 SV=1
Length = 648
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 296/626 (47%), Positives = 423/626 (67%), Gaps = 19/626 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V + D+S++V D+GRGIP+D+
Sbjct: 33 MYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVFIEPDDSITVVDDGRGIPVDIQEK 92
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T + A+ETV TVLHAGGKFGG S LHGVG SVVNALS L+V V ++G ++Q
Sbjct: 93 TGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSSVVNALSTQLDVHVHKNGKIHYQ 150
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
+Y RG V L V D+ GT + F PD ++FT FD + + RI+ELAFLN
Sbjct: 151 EYRRGHVVADLEI----VGDTDKTGTTVHFTPDPKIFTETTIFDFDKLNKRIQELAFLNR 206
Query: 181 KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITIDLA 239
L I++ + E+ ++ Y + GG+ YV+++N +K + D + ++D IT+++A
Sbjct: 207 GLQISITDKRQGLEQTKH--YHYEGGIASYVEYINENKDVIFDTPIYTDGEMDDITVEVA 264
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
+Q+ + Y + ++ +AN+I T +GGTH +G + +LTR +N +K+K +KD + +L+GE
Sbjct: 265 MQYTT-GYHENVMSFANNIHTHEGGTHEQGFRTALTRVINDYARKNKLLKDNEDNLTGED 323
Query: 300 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSK 359
VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++ E +++L +P + I+ K
Sbjct: 324 VREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFSDFLMENPQIAKRIVEK 383
Query: 360 SLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQ 419
+ A KA +AAKRAR++ R+KS L S+LPGKLADCSS P E+E+FIVEGDSAGGSAK
Sbjct: 384 GILAAKARVAAKRAREVTRKKSGLEISNLPGKLADCSSNNPAETELFIVEGDSAGGSAKS 443
Query: 420 GRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKII 479
GR+R FQAILP+RGKILNVE+ + NEEI++L A+G G G +F RY K++
Sbjct: 444 GRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGF-GAEFDVSKARYQKLV 502
Query: 480 ILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKK 539
++TDADVDGAHIRTLLLT YRY K + + G +Y+ PP+Y V+ G +++ ++
Sbjct: 503 LMTDADVDGAHIRTLLLTLIYRYMKPILEAGYVYIAQPPIYGVKVGSEIKEYIQPGADQE 562
Query: 540 VKSSFPSNALYS-------IQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVV 592
+K + A YS IQR+KGLGEM QLWETT++PE R++ ++ ++DAAEA+ +
Sbjct: 563 IKLQ-EALARYSEGRTKPTIQRYKGLGEMDDHQLWETTMDPEHRLMARVSVDDAAEADKI 621
Query: 593 FSSLMGARVDTRKELIQNAANLVNLD 618
F LMG RV+ R+E I+ A LD
Sbjct: 622 FDMLMGDRVEPRREFIEENAVYSTLD 647
>sp|P43053|GYRB_MYCHP DNA gyrase subunit B OS=Mycoplasma hominis (strain ATCC 23114 /
NBRC 14850 / NCTC 10111 / PG21) GN=gyrB PE=3 SV=2
Length = 648
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 288/626 (46%), Positives = 404/626 (64%), Gaps = 21/626 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGS G +GLHHL++EI+DN+VDEA AG+A+ I++ L +N + V DNGRG+P +H
Sbjct: 30 MYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKLYPNNVIEVEDNGRGMPTGIHSG 89
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T KSA+ET+LTVLHAGGKF GS+ Y VSGGLHGVG SVVNALS EV V RDG ++Q
Sbjct: 90 TKKSAVETILTVLHAGGKFDGSN--YKVSGGLHGVGASVVNALSSEFEVWVKRDGKLHYQ 147
Query: 121 KYSRGK-PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
++ G PV L V+ S+ GT I+F PD + FD +TI +++A+LN
Sbjct: 148 QFRNGGIPVKPL--EVIGNVSEVETGTTIKFHPDYTIMEKE-NFDFDTIIDHSKQIAYLN 204
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDV-------- 231
L I + + EKN + F GGL +YV+ LN KK + V + + V
Sbjct: 205 KGLKITVE----NVEKNIIKVFCFEGGLIDYVKELNKGKKLIVPEVIYAEGVFNDKNFTN 260
Query: 232 -DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 290
+ +++A+Q+ ++AY+++++ YAN+I+TIDGGTH +G +L R N+ + +K K
Sbjct: 261 GQDVIVEVAMQY-NEAYTNSIVSYANNIQTIDGGTHEQGFYDALVRIYNNYAETNKLFKT 319
Query: 291 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 350
++ E V+EGL IIS++ +P FEGQTK +L N + R ++ + + L YL +P
Sbjct: 320 SSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDARIATNKILSDSLERYLNENP 379
Query: 351 DVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEG 410
++ +I+ K L + L +AR+ R+ + L +LPGKLADCSS E E+FIVEG
Sbjct: 380 EIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGKLADCSSKNAEIRELFIVEG 439
Query: 411 DSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK 470
+SAGGSAK GRDR QAILPLRGK++N E+ A++ N+EI +I ALG G+ E F
Sbjct: 440 NSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKEIATMIHALGTGINTE-FDI 498
Query: 471 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQY 530
L+YHKIII+TDADVDGAHI TLLLTFFYRY K L + G +Y+ PPLYK+ GK V+Y
Sbjct: 499 NKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQPPLYKITSGKNVEY 558
Query: 531 CYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEAN 590
Y+D + +++ + +IQR+KGLGEM P QLWETT++PE R + Q+ I+DAA +
Sbjct: 559 AYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICD 618
Query: 591 VVFSSLMGARVDTRKELIQNAANLVN 616
VF++LMG ++ R + IQ A N
Sbjct: 619 TVFATLMGEEIEPRHDFIQENAKYAN 644
>sp|P0C5C5|GYRB_MYCTU DNA gyrase subunit B OS=Mycobacterium tuberculosis GN=gyrB PE=1
SV=1
Length = 675
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/654 (44%), Positives = 415/654 (63%), Gaps = 47/654 (7%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHL++E++DNAVDEA AGYA+ + V LL D V VAD+GRGIP+ H A
Sbjct: 32 MYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLEDGGVEVADDGRGIPVATH-A 90
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ ++ V+T LHAGGKF S Y++SGGLHGVG+SVVNALS LEV + RDG E+ Q
Sbjct: 91 SGIPTVDVVMTQLHAGGKF--DSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQ 148
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y + +P+ + G+ +RFW D VF T ++D T+A R++E+AFLN
Sbjct: 149 VYEKSEPLGLKQGA-----PTKKTGSTVRFWADPAVFETT-EYDFETVARRLQEMAFLNK 202
Query: 181 KLTIALR----------------------------KEDSDPEKNQYNEYFFAGGLEEYVQ 212
LTI L E + P K + + + GGL ++V+
Sbjct: 203 GLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVK 262
Query: 213 WLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 271
+N K +H +V F G +++A+QW + YS+++ +AN+I T +GGTH EG +
Sbjct: 263 HINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNA-GYSESVHTFANTINTHEGGTHEEGFR 321
Query: 272 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 331
++LT +N K K +KDKD +L+G+ +REGL +ISV+V P+FEGQTKT+LGN EV+
Sbjct: 322 SALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVK 381
Query: 332 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGK 391
V + E LT + E +P +++K++S+ +A +AA++AR+LVR+KS LPGK
Sbjct: 382 SFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGK 441
Query: 392 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 451
LADC ST P +SE+++VEGDSAGGSAK GRD FQAILPLRGKI+NVE+ + KN E
Sbjct: 442 LADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTE 501
Query: 452 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 511
+Q +I ALG G+ E F LRYHKI+++ DADVDG HI TLLLT +R+ + L + G
Sbjct: 502 VQAIITALGTGIHDE-FDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGH 560
Query: 512 IYVGVPPLYKVE-RGKQVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQ 565
+++ PPLYK++ + ++ Y D E +K+ N IQR+KGLGEM +
Sbjct: 561 VFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKE 620
Query: 566 LWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 618
LWETT++P R+L+Q+ ++DAA A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 621 LWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLD 674
>sp|A5TY73|GYRB_MYCTA DNA gyrase subunit B OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=gyrB PE=3 SV=2
Length = 675
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/654 (44%), Positives = 415/654 (63%), Gaps = 47/654 (7%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGSTG RGLHHL++E++DNAVDEA AGYA+ + V LL D V VAD+GRGIP+ H A
Sbjct: 32 MYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLEDGGVEVADDGRGIPVATH-A 90
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ ++ V+T LHAGGKF S Y++SGGLHGVG+SVVNALS LEV + RDG E+ Q
Sbjct: 91 SGIPTVDVVMTQLHAGGKF--DSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQ 148
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y + +P+ + G+ +RFW D VF T ++D T+A R++E+AFLN
Sbjct: 149 VYEKSEPLGLKQGA-----PTKKTGSTVRFWADPAVFETT-EYDFETVARRLQEMAFLNK 202
Query: 181 KLTIALR----------------------------KEDSDPEKNQYNEYFFAGGLEEYVQ 212
LTI L E + P K + + + GGL ++V+
Sbjct: 203 GLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVK 262
Query: 213 WLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 271
+N K +H +V F G +++A+QW + YS+++ +AN+I T +GGTH EG +
Sbjct: 263 HINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNA-GYSESVHTFANTINTHEGGTHEEGFR 321
Query: 272 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 331
++LT +N K K +KDKD +L+G+ +REGL +ISV+V P+FEGQTKT+LGN EV+
Sbjct: 322 SALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVK 381
Query: 332 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGK 391
V + E LT + E +P +++K++S+ +A +AA++AR+LVR+KS LPGK
Sbjct: 382 SFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGK 441
Query: 392 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 451
LADC ST P +SE+++VEGDSAGGSAK GRD FQAILPLRGKI+NVE+ + KN E
Sbjct: 442 LADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTE 501
Query: 452 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 511
+Q +I ALG G+ E F LRYHKI+++ DADVDG HI TLLLT +R+ + L + G
Sbjct: 502 VQAIITALGTGIHDE-FDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGH 560
Query: 512 IYVGVPPLYKVE-RGKQVQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMPVQ 565
+++ PPLYK++ + ++ Y D E +K+ N IQR+KGLGEM +
Sbjct: 561 VFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKE 620
Query: 566 LWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 618
LWETT++P R+L+Q+ ++DAA A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 621 LWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLD 674
>sp|Q59533|GYRB_MYCLE DNA gyrase subunit B OS=Mycobacterium leprae (strain TN) GN=gyrB
PE=3 SV=2
Length = 678
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 298/656 (45%), Positives = 420/656 (64%), Gaps = 47/656 (7%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MY+GSTG RGLHHL++E++DN+VDEA AGYA+ ++V L D SV VADNGRGIP+ +H A
Sbjct: 31 MYVGSTGERGLHHLIWEVVDNSVDEAMAGYATQVDVRLFDDGSVEVADNGRGIPVAVH-A 89
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
T ++ V+T LHAGGKFGG SGY+VSGGLHGVG+SVVNALS +EV + RDG E+ Q
Sbjct: 90 TGVPTVDVVMTQLHAGGKFGGKDSGYNVSGGLHGVGVSVVNALSTRVEVDIKRDGYEWSQ 149
Query: 121 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP 180
Y + P ++ + GT IRFW D +F T ++D T+A RI+E+AFLN
Sbjct: 150 FYDKAVPGILKQG-----EATEATGTTIRFWADPDIFETT-KYDFGTVARRIQEVAFLNK 203
Query: 181 KLTIAL------------------------------RKEDSDPEKNQYNEYFFAGGLEEY 210
LTI L E S P K ++ + + GGL ++
Sbjct: 204 GLTINLVDERVKQDEVVDDVVSDTAEAPVAMTVEEKSTESSAPHKVRHRTFHYPGGLVDF 263
Query: 211 VQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEG 269
V+ +N K P+ ++ F G +++A+QW + YS+++ +AN+I T +GGTH EG
Sbjct: 264 VKHINRTKTPIQQSIIDFDGKGAGHEVEVAMQW-NGGYSESVHTFANTINTHEGGTHEEG 322
Query: 270 VKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 329
+++LT +N K K +KDKD +L+G+ +REGL +ISV+V P+FEGQTKT+LGN E
Sbjct: 323 FRSALTSVVNKYAKDKKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTE 382
Query: 330 VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLP 389
V+ V + E L + E +P ++++K++S+ +A +AA++AR+LVR+KS LP
Sbjct: 383 VKSFVQRVCNEQLIHWFEANPVDAKAVVNKAISSAQARIAARKARELVRRKSATDLGGLP 442
Query: 390 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 449
GKLADC ST P SE+++VEGDSAGGSAK GRD FQAILPLRGKI+NVE+ + KN
Sbjct: 443 GKLADCRSTDPRSSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKN 502
Query: 450 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 509
E+Q +I ALG G+ E F LRYHKI+++ DADVDG HI TLLLT +R+ + L +
Sbjct: 503 TEVQAIITALGTGIHDE-FDISRLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIEH 561
Query: 510 GCIYVGVPPLYKVERGKQ-VQYCYDDAEL-----KKVKSSFPSNALYSIQRFKGLGEMMP 563
G +++ PPLYK++ + ++ Y D+E +K N IQR+KGLGEM
Sbjct: 562 GYVFLAQPPLYKLKWQRMDPEFAYSDSERDGLLETGLKLGKKINKEDGIQRYKGLGEMDA 621
Query: 564 VQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 618
+LWETT++P R+L+Q+ ++DAA A+ +FS LMG VD R+ I +NA ++ LD
Sbjct: 622 KELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLD 677
>sp|P66939|PARE_STAAN DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain
N315) GN=parE PE=1 SV=1
Length = 663
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 401/618 (64%), Gaps = 22/618 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYEI+DN+VDE GY + I+V + D S+S+ DNGRG+P +H
Sbjct: 27 MYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHK- 85
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ K +E + TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ
Sbjct: 86 SGKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGSIYHQ 143
Query: 121 KYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
+ G P + L + T++ F PD +F + F+ + ++ R++E AFL
Sbjct: 144 SFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLL 199
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 239
L I L S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A
Sbjct: 200 KNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVA 257
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
Q+ +D YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G
Sbjct: 258 FQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGND 316
Query: 300 VREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
+REGLT ++SVR+P +FEGQTK++LG E R VD V + L YLE + S++
Sbjct: 317 IREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLV 376
Query: 358 SKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 415
K++ A +A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGG
Sbjct: 377 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 436
Query: 416 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 475
SAK GRDR+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y
Sbjct: 437 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNY 495
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYC 531
+++II+TDAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555
Query: 532 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 591
+ D EL K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++
Sbjct: 556 WTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSK 613
Query: 592 VFSSLMGARVDTRKELIQ 609
++LMG +V R+E I+
Sbjct: 614 RVTTLMGDKVQPRREWIE 631
>sp|P66938|PARE_STAAM DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=parE PE=3 SV=1
Length = 663
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 401/618 (64%), Gaps = 22/618 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYEI+DN+VDE GY + I+V + D S+S+ DNGRG+P +H
Sbjct: 27 MYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHK- 85
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ K +E + TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ
Sbjct: 86 SGKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGSIYHQ 143
Query: 121 KYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
+ G P + L + T++ F PD +F + F+ + ++ R++E AFL
Sbjct: 144 SFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLL 199
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 239
L I L S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A
Sbjct: 200 KNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVA 257
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
Q+ +D YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G
Sbjct: 258 FQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGND 316
Query: 300 VREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
+REGLT ++SVR+P +FEGQTK++LG E R VD V + L YLE + S++
Sbjct: 317 IREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLV 376
Query: 358 SKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 415
K++ A +A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGG
Sbjct: 377 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 436
Query: 416 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 475
SAK GRDR+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y
Sbjct: 437 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNY 495
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYC 531
+++II+TDAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555
Query: 532 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 591
+ D EL K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++
Sbjct: 556 WTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSK 613
Query: 592 VFSSLMGARVDTRKELIQ 609
++LMG +V R+E I+
Sbjct: 614 RVTTLMGDKVQPRREWIE 631
>sp|P0A0K9|PARE_STAAW DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain MW2)
GN=parE PE=3 SV=1
Length = 663
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 401/618 (64%), Gaps = 22/618 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYEI+DN+VDE GY + I+V + D S+S+ DNGRG+P +H
Sbjct: 27 MYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHK- 85
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ K +E + TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ
Sbjct: 86 SGKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQ 143
Query: 121 KYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
+ G P + L + T++ F PD +F + F+ + ++ R++E AFL
Sbjct: 144 SFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLL 199
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 239
L I L S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A
Sbjct: 200 KNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVA 257
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
Q+ +D YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G
Sbjct: 258 FQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGND 316
Query: 300 VREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
+REGLT ++SVR+P +FEGQTK++LG E R VD V + L YLE + S++
Sbjct: 317 IREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLV 376
Query: 358 SKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 415
K++ A +A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGG
Sbjct: 377 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 436
Query: 416 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 475
SAK GRDR+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y
Sbjct: 437 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNY 495
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYC 531
+++II+TDAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555
Query: 532 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 591
+ D EL K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++
Sbjct: 556 WTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSK 613
Query: 592 VFSSLMGARVDTRKELIQ 609
++LMG +V R+E I+
Sbjct: 614 RVTTLMGDKVQPRREWIE 631
>sp|P0C1S7|PARE_STAAU DNA topoisomerase 4 subunit B OS=Staphylococcus aureus GN=parE PE=3
SV=1
Length = 663
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 401/618 (64%), Gaps = 22/618 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYEI+DN+VDE GY + I+V + D S+S+ DNGRG+P +H
Sbjct: 27 MYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHK- 85
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ K +E + TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ
Sbjct: 86 SGKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQ 143
Query: 121 KYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
+ G P + L + T++ F PD +F + F+ + ++ R++E AFL
Sbjct: 144 SFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLL 199
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 239
L I L S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A
Sbjct: 200 KNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVA 257
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
Q+ +D YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G
Sbjct: 258 FQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGND 316
Query: 300 VREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
+REGLT ++SVR+P +FEGQTK++LG E R VD V + L YLE + S++
Sbjct: 317 IREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLV 376
Query: 358 SKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 415
K++ A +A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGG
Sbjct: 377 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 436
Query: 416 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 475
SAK GRDR+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y
Sbjct: 437 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNY 495
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYC 531
+++II+TDAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555
Query: 532 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 591
+ D EL K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++
Sbjct: 556 WTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSK 613
Query: 592 VFSSLMGARVDTRKELIQ 609
++LMG +V R+E I+
Sbjct: 614 RVTTLMGDKVQPRREWIE 631
>sp|Q5HG65|PARE_STAAC DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain COL)
GN=parE PE=3 SV=2
Length = 663
Score = 533 bits (1373), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/618 (45%), Positives = 401/618 (64%), Gaps = 22/618 (3%)
Query: 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 60
MYIGST RGLHHLVYEI+DN+VDE GY + I+V + D S+S+ DNGRG+P +H
Sbjct: 27 MYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINKDGSISIEDNGRGMPTGIHK- 85
Query: 61 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 120
+ K +E + TVLHAGGKFG GY SGGLHGVG SVVNALSE LEV + RDG YHQ
Sbjct: 86 SGKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASVVNALSEWLEVEIHRDGNIYHQ 143
Query: 121 KYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN 179
+ G P + L + T++ F PD +F + F+ + ++ R++E AFL
Sbjct: 144 SFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFKASTSFNFDVLSERLQESAFLL 199
Query: 180 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 239
L I L S E+ ++ Y + G++E+V ++N K+ LHDV F + +GI +D+A
Sbjct: 200 KNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGKEVLHDVATFSGEANGIEVDVA 257
Query: 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 299
Q+ +D YS+++L + N++RT DGGTH G K ++TR N ++ +K KD +L G
Sbjct: 258 FQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYARRINELKTKDKNLDGND 316
Query: 300 VREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 357
+REGLT ++SVR+P +FEGQTK++LG E R VD V + L YLE + S++
Sbjct: 317 IREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADKLPFYLEEKGQLSKSLV 376
Query: 358 SKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGG 415
K++ A +A AA++AR+ R +K+ + + L GKL S E++E+++VEGDSAGG
Sbjct: 377 KKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGG 436
Query: 416 SAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRY 475
SAK GRDR+FQAILPLRGK++N E+ ++KNEEI +I +G GV G DFK E Y
Sbjct: 437 SAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGV-GTDFKIEDSNY 495
Query: 476 HKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERG----KQVQYC 531
+++II+TDAD DGAHI+ LLLTFF++Y K L G +++ +PPLYK+E+G K+V+Y
Sbjct: 496 NRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLYKLEKGKGKTKRVEYA 555
Query: 532 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANV 591
+ D EL K++ +++QR+KGLGEM P QLWETT+NPE R L ++ +ED ++
Sbjct: 556 WTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETTMNPETRTLIRVQVEDEVRSSK 613
Query: 592 VFSSLMGARVDTRKELIQ 609
++LMG +V R+E I+
Sbjct: 614 RVTTLMGDKVQPRREWIE 631
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,969,676
Number of Sequences: 539616
Number of extensions: 9831281
Number of successful extensions: 30596
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 29455
Number of HSP's gapped (non-prelim): 270
length of query: 622
length of database: 191,569,459
effective HSP length: 124
effective length of query: 498
effective length of database: 124,657,075
effective search space: 62079223350
effective search space used: 62079223350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)