Query 007002
Match_columns 622
No_of_seqs 223 out of 1650
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 4E-157 1E-161 1394.1 35.6 586 1-617 27-663 (1177)
2 3lnu_A Topoisomerase IV subuni 100.0 1E-100 3E-105 820.5 35.5 364 1-380 44-408 (408)
3 1ei1_A DNA gyrase B, GYRB; ATP 100.0 2.4E-96 8E-101 789.5 35.9 365 1-376 24-390 (391)
4 3k9f_C DNA topoisomerase 4 sub 100.0 6.8E-97 2E-101 728.7 18.1 237 376-615 21-261 (268)
5 1s16_A Topoisomerase IV subuni 100.0 3.8E-93 1.3E-97 765.1 37.8 359 1-375 25-387 (390)
6 3nuh_B DNA gyrase subunit B; t 100.0 4.9E-94 1.7E-98 748.9 14.2 249 372-622 3-420 (420)
7 3m4i_A DNA gyrase subunit B; G 100.0 1.1E-92 3.8E-97 692.0 12.8 228 392-622 9-242 (242)
8 1kij_A DNA gyrase subunit B; t 100.0 5E-88 1.7E-92 726.5 33.8 364 1-376 23-389 (390)
9 1pvg_A DNA topoisomerase II; G 100.0 1.5E-87 5E-92 724.3 28.3 339 1-371 32-416 (418)
10 1zxm_A TOPO IIA ATPase, DNA to 100.0 3.8E-87 1.3E-91 718.0 24.8 343 1-367 21-394 (400)
11 2xkj_E Topoisomerase IV; type 100.0 1.3E-86 4.4E-91 748.0 17.8 253 358-615 2-255 (767)
12 3cwv_A DNA gyrase, B subunit, 100.0 6.4E-82 2.2E-86 672.8 27.7 331 1-364 21-362 (369)
13 3l4j_A DNA topoisomerase 2; to 100.0 2.8E-77 9.4E-82 665.1 14.7 229 386-618 4-244 (757)
14 3qx3_A DNA topoisomerase 2-bet 100.0 1.1E-76 3.7E-81 660.8 10.3 221 386-612 34-267 (803)
15 2xcs_B DNA gyrase subunit B, D 100.0 7.9E-73 2.7E-77 629.3 12.8 196 385-615 3-198 (692)
16 4duh_A DNA gyrase subunit B; s 100.0 1.2E-56 4E-61 445.4 16.7 195 1-205 25-220 (220)
17 4emv_A DNA topoisomerase IV, B 100.0 3.2E-55 1.1E-59 436.2 15.0 193 1-205 31-226 (226)
18 3fv5_A DNA topoisomerase 4 sub 100.0 1.3E-48 4.4E-53 383.8 16.7 191 1-203 11-201 (201)
19 3ttz_A DNA gyrase subunit B; p 100.0 2.8E-46 9.7E-51 365.7 16.1 177 1-207 22-198 (198)
20 2q2e_B Type 2 DNA topoisomeras 100.0 2.8E-38 9.5E-43 355.4 1.0 287 1-347 28-334 (621)
21 3h4l_A DNA mismatch repair pro 99.9 7.7E-23 2.6E-27 217.3 23.6 264 9-318 24-328 (367)
22 2zbk_B Type 2 DNA topoisomeras 99.9 1.4E-25 4.9E-30 249.1 1.0 264 1-316 22-310 (530)
23 3na3_A DNA mismatch repair pro 99.9 4.9E-23 1.7E-27 217.0 20.1 263 9-318 27-305 (348)
24 1b63_A MUTL; DNA mismatch repa 99.9 3.7E-23 1.3E-27 218.3 15.9 225 9-262 23-267 (333)
25 1h7s_A PMS1 protein homolog 2; 99.9 7.1E-21 2.4E-25 202.8 18.0 264 9-318 33-333 (365)
26 1mu5_A Type II DNA topoisomera 99.7 1.4E-17 4.8E-22 182.9 2.7 263 1-315 23-310 (471)
27 3t0h_A Heat shock protein HSP 99.1 3.4E-10 1.1E-14 112.6 10.1 161 12-190 34-216 (228)
28 3o0i_A HSP90AA1 protein; HSP90 99.0 4.7E-10 1.6E-14 112.9 9.4 161 12-190 62-244 (256)
29 2ior_A Chaperone protein HTPG; 99.0 7.5E-10 2.6E-14 110.9 10.2 146 12-176 49-221 (235)
30 1y4s_A Chaperone protein HTPG; 99.0 1.1E-08 3.6E-13 114.0 18.2 155 12-184 29-210 (559)
31 2wer_A ATP-dependent molecular 98.9 4.1E-09 1.4E-13 104.5 12.1 162 12-190 28-211 (220)
32 2gqp_A Endoplasmin; GRP94, HSP 98.9 6.5E-09 2.2E-13 104.1 11.2 164 12-191 34-222 (236)
33 1yc1_A HSP 86, heat shock prot 98.8 1E-08 3.5E-13 104.2 11.3 161 12-190 70-252 (264)
34 2ioq_A Chaperone protein HTPG; 98.8 1.9E-08 6.6E-13 113.3 14.6 155 12-184 29-210 (624)
35 3peh_A Endoplasmin homolog; st 98.7 8.1E-08 2.8E-12 97.6 11.9 160 12-190 48-232 (281)
36 1qy5_A Endoplasmin; GRP94, NEC 98.7 3.7E-08 1.3E-12 100.2 8.2 163 12-190 30-217 (269)
37 3nmq_A Heat shock protein HSP 98.6 8E-08 2.7E-12 95.7 9.4 160 12-191 41-224 (239)
38 2o1u_A Endoplasmin; GRP94, HSP 98.6 1.9E-07 6.5E-12 105.6 11.9 157 12-188 47-232 (666)
39 2cg9_A ATP-dependent molecular 98.5 5.9E-07 2E-11 101.7 13.1 156 12-186 28-207 (677)
40 3ied_A Heat shock protein; HSP 98.2 2.8E-06 9.6E-11 84.8 9.1 130 33-176 120-260 (272)
41 1th8_A Anti-sigma F factor; SP 97.9 1.7E-05 6E-10 72.0 7.5 94 9-122 38-136 (145)
42 1id0_A PHOQ histidine kinase; 97.7 6.6E-05 2.2E-09 68.1 7.1 79 7-107 41-122 (152)
43 3a0y_A Sensor protein; ATP-LID 97.6 6.9E-05 2.4E-09 67.8 6.6 76 8-105 45-123 (152)
44 1bxd_A ENVZ(290-450), protein 97.5 8.7E-05 3E-09 68.3 6.0 80 8-107 45-127 (161)
45 1ysr_A Sensor-type histidine k 97.5 9.2E-05 3.2E-09 67.2 5.9 80 8-107 44-126 (150)
46 3sl2_A Sensor histidine kinase 97.5 7.9E-05 2.7E-09 69.8 5.5 85 7-107 40-129 (177)
47 2e0a_A Pyruvate dehydrogenase 97.5 9E-05 3.1E-09 79.2 6.0 92 8-107 228-327 (394)
48 2q8g_A [pyruvate dehydrogenase 97.5 9.8E-05 3.3E-09 79.3 5.8 92 8-107 241-340 (407)
49 1gkz_A [3-methyl-2-oxobutanoat 97.4 0.00012 4.1E-09 78.0 6.1 92 8-107 236-350 (388)
50 3zxo_A Redox sensor histidine 97.4 9.8E-05 3.3E-09 65.2 3.8 44 10-56 43-88 (129)
51 2btz_A Pyruvate dehydrogenase 97.4 0.00012 4.2E-09 78.2 5.0 91 8-107 229-327 (394)
52 1y8o_A [pyruvate dehydrogenase 97.3 9.3E-05 3.2E-09 79.9 3.8 92 8-107 251-351 (419)
53 2c2a_A Sensor histidine kinase 97.3 0.00017 6E-09 71.6 5.5 86 7-106 135-224 (258)
54 1r62_A Nitrogen regulation pro 97.3 0.00016 5.3E-09 65.9 4.2 79 8-107 46-137 (160)
55 3ehg_A Sensor kinase (YOCF pro 97.2 0.0006 2E-08 60.4 6.8 46 9-57 39-87 (128)
56 4ew8_A Sensor protein DIVL; si 97.2 0.0003 1E-08 70.0 5.3 78 8-107 153-233 (268)
57 3jz3_A Sensor protein QSEC; he 97.2 0.00018 6.3E-09 69.1 3.6 78 9-106 116-193 (222)
58 1b3q_A Protein (chemotaxis pro 97.0 0.00042 1.4E-08 73.8 4.7 90 11-107 107-225 (379)
59 3a0r_A Sensor protein; four he 97.0 0.00037 1.3E-08 71.8 4.1 75 8-104 242-319 (349)
60 3d36_A Sporulation kinase B; G 96.9 0.00042 1.4E-08 67.6 3.2 79 8-107 121-202 (244)
61 3zxq_A Hypoxia sensor histidin 96.7 0.0013 4.6E-08 57.3 4.8 45 10-57 39-85 (124)
62 3ehh_A Sensor kinase (YOCF pro 96.7 0.0018 6.3E-08 62.1 5.9 45 10-57 130-177 (218)
63 3ke6_A Protein RV1364C/MT1410; 96.5 0.0035 1.2E-07 67.1 7.2 85 9-124 296-385 (399)
64 1i58_A Chemotaxis protein CHEA 96.3 0.0039 1.3E-07 58.7 5.2 47 11-57 48-107 (189)
65 4fpp_A Phosphotransferase; fou 95.8 0.0028 9.5E-08 63.0 2.1 75 10-104 146-223 (247)
66 1ixm_A SPO0B, protein (sporula 83.5 1.3 4.4E-05 42.2 5.4 42 16-57 111-161 (192)
67 2zbk_B Type 2 DNA topoisomeras 79.5 12 0.00042 41.1 12.2 100 234-348 350-457 (530)
68 1mu5_A Type II DNA topoisomera 76.9 21 0.00072 38.6 12.9 85 234-334 351-441 (471)
69 1t6t_1 Putative protein; struc 41.1 8.2 0.00028 33.7 1.0 27 474-500 60-87 (118)
70 2q2e_B Type 2 DNA topoisomeras 37.4 1.5E+02 0.005 33.1 10.7 87 234-332 353-446 (621)
71 3hqc_A Tensin-like C1 domain-c 30.3 29 0.00099 31.8 2.9 49 1-52 19-71 (157)
72 2fcj_A Small toprim domain pro 29.1 14 0.00049 32.2 0.6 56 474-544 49-104 (119)
73 4h62_V Mediator of RNA polymer 27.1 42 0.0014 21.2 2.3 18 12-29 11-28 (31)
74 1wvh_A Tensin, tensin1; beta s 23.7 55 0.0019 29.1 3.4 50 1-53 7-60 (134)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-157 Score=1394.14 Aligned_cols=586 Identities=24% Similarity=0.356 Sum_probs=479.1
Q ss_pred CeecCCCCc-----------------------hhhHHHHHHHHhHHHhhhcCC-CCeEEEEEe-CCCeEEEEECCCCccC
Q 007002 1 MYIGSTGPR-----------------------GLHHLVYEILDNAVDEAQAGY-ASNIEVALL-ADNSVSVADNGRGIPI 55 (622)
Q Consensus 1 MYiGst~~~-----------------------gL~~lv~EildNaiDe~~~g~-~~~I~V~l~-~~g~i~V~DnGrGIP~ 55 (622)
||||||++. |||||||||||||+||++||+ |+.|.|+|+ +||+|+|+||||||||
T Consensus 27 MYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~sisV~DnGRGIPv 106 (1177)
T 4gfh_A 27 TYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPI 106 (1177)
T ss_dssp GTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTEEEEEECSSCCCC
T ss_pred CccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCCEEEEEecCCcccc
Confidence 999999965 999999999999999999997 689999999 5999999999999999
Q ss_pred cccCCCCcchhhhhheeeccCCCCCCCCCCeeeccccccccceeeeeecCeEEEEEE--eCCEEEEEEEecCccccccee
Q 007002 56 DLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGMEYHQKYSRGKPVTTLTC 133 (622)
Q Consensus 56 ~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~--r~g~~~~q~f~~G~~~~~~~~ 133 (622)
++||++|+|+||+|||+|||||||+++ +|++||||||||+|||||||++|.|+|. |+|+.|.|+|++|+++.+++.
T Consensus 107 d~h~~~~~~~~Evv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~ 184 (1177)
T 4gfh_A 107 EIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPK 184 (1177)
T ss_dssp SBCTTTCSBHHHHHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCE
T ss_pred cccCCCCCEeeeeeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCe
Confidence 999999999999999999999999987 9999999999999999999999998885 789999999999999877655
Q ss_pred eccCCCCCCCCCeEEEEEeCcccccccccCCHHHHHHHHHHHhccCC---CcEEEEeecCCCCCCCceeEEEeCCcHHHH
Q 007002 134 HVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP---KLTIALRKEDSDPEKNQYNEYFFAGGLEEY 210 (622)
Q Consensus 134 ~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~i~~rl~elA~lnp---gl~I~l~d~r~~~~~~~~~~f~~~~Gl~~y 210 (622)
+. ....+++||+|+|+||+++|++ ..|+++.+..|++++|+|++ ++.+.+++++. ..++|++|+.+|
T Consensus 185 i~--~~~~~~tGT~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g~~~-------~~~~f~~gi~~y 254 (1177)
T 4gfh_A 185 IT--SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKSL-------KIRNFKNYVELY 254 (1177)
T ss_dssp EE--ECCSSCCCEEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESSCBC-------CCCSHHHHHGGG
T ss_pred ee--cCCCCCCceEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecCCee-------EEeeccchhhhh
Confidence 42 1334578999999999999985 47999999999999888874 57788888764 457788999999
Q ss_pred HHHHhcCCCCCC--------CeeEEEeecceeEEEEEEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHH
Q 007002 211 VQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLG 282 (622)
Q Consensus 211 v~~l~~~~~~l~--------~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~ 282 (622)
+..++..+..++ +...+..+..+.+||||++|+ +++ .+++||||+|+|++||||++||++||+++||+|+
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T~~GGTHv~gfr~altr~in~~~ 332 (1177)
T 4gfh_A 255 LKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIATTMGGTHVNYITDQIVKKISEIL 332 (1177)
T ss_dssp TTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEETTEEHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeecCCCchHHHHHHHHHHHHHHHHh
Confidence 988766543322 111223344566799999998 444 4468999999999999999999999999999998
Q ss_pred hhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCCchhhhhhhhhhH-HHHHHHHhhChHHHHHHHHHHH
Q 007002 283 KKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ-EYLTEYLELHPDVLDSILSKSL 361 (622)
Q Consensus 283 kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~FegQTK~kL~n~~v~~~v~~~v~-~~l~~~l~~np~~~~~I~~k~~ 361 (622)
++.+. .+++++|||+||++||||+++||+|+||||+||+|+.........+. +.+..+++ .. |+++++
T Consensus 333 ~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~~~~~~~~~--~~----i~~~~~ 401 (1177)
T 4gfh_A 333 KKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMK--TD----LATRMF 401 (1177)
T ss_dssp HHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCHHHHHHHTT--SH----HHHHHH
T ss_pred hhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchHHHhhhhhh--HH----HHHHHH
Confidence 76543 46899999999999999999999999999999999865443332222 23333332 23 444444
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCCceEEEEeccCCCccccccC---CCCceEeeccCCcc
Q 007002 362 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKI 435 (622)
Q Consensus 362 ~~~~ar~aakkar~~~~~k~~~~~~~l~gKL~d~~---~~~~~~~eL~lvEGDSA~gsa~~gR---dr~~qai~PLrGKi 435 (622)
.++++++++++++...++|+.+ ..+ +||+||+ +++|++|||||||||||||||++|| +|+|||||||||||
T Consensus 402 ~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKi 478 (1177)
T 4gfh_A 402 EIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKM 478 (1177)
T ss_dssp HHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSC
T ss_pred HHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhhHhhcccccCcccEEecccCcee
Confidence 4444444444444444444332 233 4999987 6899999999999999999999998 89999999999999
Q ss_pred ccccccCHHHHhhCHhHHHHHHHhccCccCCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhh-cCcEEE
Q 007002 436 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYV 514 (622)
Q Consensus 436 lNv~ka~~~ki~~n~Ei~~li~~lG~~~~~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~ 514 (622)
|||++|+.+||++|+||++|++|||||++.+.+|+++||||||||||||||||+|||||||||||||||+||+ +||||+
T Consensus 479 LNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrtLLltfF~r~~p~Lie~~G~vyi 558 (1177)
T 4gfh_A 479 LNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLE 558 (1177)
T ss_dssp CCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEE
T ss_pred chhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHHHHHHHHHHhChhhEeeCCEEEE
Confidence 9999999999999999999999999999655559999999999999999999999999999999999999999 999999
Q ss_pred ecCCeEEEEeC---CeEEEeeCHHHHHHHHHhCCCCCccceeEeecccCCCcchhhhhccCCccee--EEeeccccHHHH
Q 007002 515 GVPPLYKVERG---KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRM--LKQLVIEDAAEA 589 (622)
Q Consensus 515 ~~tPl~kv~~g---k~~~~~~~~~e~~~~~~~~~~~~~~~i~~~KGLG~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~ 589 (622)
|+||||||+.| |...|||+++|+++|++..+...+|+||||||||||+|+|||||||||++|+ +.+++.+|++.+
T Consensus 559 a~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Ett~~~d~~~~~~~~v~~~d~~~~ 638 (1177)
T 4gfh_A 559 FITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYI 638 (1177)
T ss_dssp ECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHHHHTCTTTEEEEECCCTTTHHHH
T ss_pred EecceEEEEEecCCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHHHhCcccceEEEEEcccccHHHH
Confidence 99999999865 4567999999999999887655679999999999999999999888877554 455666676655
Q ss_pred HHHHHHhcCCCchHHHHHHHhccccCCc
Q 007002 590 NVVFSSLMGARVDTRKELIQNAANLVNL 617 (622)
Q Consensus 590 ~~~~~~lmg~~~~~Rk~~i~~~~~~~~~ 617 (622)
+++ |||+++++||+||++|.+...+
T Consensus 639 d~~---f~~~~~~~RkewI~~~~~~~~~ 663 (1177)
T 4gfh_A 639 DLA---FSKKKADDRKEWLRQYEPGTVL 663 (1177)
T ss_dssp HHH---HCGGGHHHHHHHHHHCCTTCCC
T ss_pred HHH---HhccchhhHHHHHHhcCccccc
Confidence 554 4689999999999999987544
No 2
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=1e-100 Score=820.50 Aligned_cols=364 Identities=33% Similarity=0.574 Sum_probs=311.3
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 80 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~ 80 (622)
||||||++ ||||+||||||+||++||+|++|.|+|++||+|+|+|||||||+++||++|+|++|+|||+|||||||+
T Consensus 44 MYiGst~~---~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd 120 (408)
T 3lnu_A 44 MYTDTARP---NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFN 120 (408)
T ss_dssp GTSCTTST---HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC-------
T ss_pred cEECCCCc---chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcC
Confidence 99999987 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCCCCCCeEEEEEeCccccccc
Q 007002 81 GSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 160 (622)
Q Consensus 81 ~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~ 160 (622)
++ .|++||||||||+|+|||||++|+|+++|+|+.|+|+|++|+++.++..+.. ....++||+|+|+||+++|+ +
T Consensus 121 ~~--~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~ig~--~~~~~~GT~V~F~PD~~iF~-~ 195 (408)
T 3lnu_A 121 NR--NYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGT--VGKKNTGTRLRFWADPKYFD-T 195 (408)
T ss_dssp ---------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEEEE--CCTTCCEEEEEEEECGGGSS-C
T ss_pred CC--ceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEecc--CcCCCCCcEEEEEECHHHhC-C
Confidence 87 9999999999999999999999999999999999999999999988765510 11257999999999999996 4
Q ss_pred ccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCCCCCeeEEEeecce-eEEEEE
Q 007002 161 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDG-ITIDLA 239 (622)
Q Consensus 161 ~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l~~~i~~~~~~~~-i~veva 239 (622)
..|+++.|.+||+++|||||||+|+|+|+|.+ ..++|+|++||.+||++++.+++++++++++..+.++ +.+|||
T Consensus 196 ~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~----~~~~f~yegGi~~yv~~l~~~k~~~~~~~~~~~~~~~~~~ve~A 271 (408)
T 3lnu_A 196 PKFNVRALRHLLRAKAVLCPGLTVKLHDEATG----EQDSWYFENGLRDYLKGEMAEHEMLPADLFVGSLKKDTEIVDWA 271 (408)
T ss_dssp SCCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEEECSSSHHHHHHHHTTTSCCEEEEEEEEEEECSSCEEEEE
T ss_pred CCcCHHHHHHHHHHHHhhcCCCEEEEEeccCC----ceeEEEcCchHHHHHHHHhcCCCcCCCCCeEeeEecCceeEEEE
Confidence 57999999999999999999999999999964 3679999999999999999988777755555555566 899999
Q ss_pred EEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCC
Q 007002 240 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEG 319 (622)
Q Consensus 240 l~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~Feg 319 (622)
|||+ ++|+++++||||+|+|++||||++||++||+++||+|+++.+++|++ .+++++|||+||++||||+++||+|+|
T Consensus 272 l~~~-~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~-~~l~~~DiregL~aviSvkv~~PqFeg 349 (408)
T 3lnu_A 272 AGWV-PEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRG-VKLAPEDVWDRVTFVLSLKMTDPQFSG 349 (408)
T ss_dssp EEEC-SSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTT-CCCCHHHHHTTEEEEEEEECSSCCEES
T ss_pred EEEc-CCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCC-CCCCHHHHhhCeEEEEEEEcCCCcccC
Confidence 9999 67999999999999999999999999999999999999999888875 899999999999999999999999999
Q ss_pred ccccccCCchhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007002 320 QTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 380 (622)
Q Consensus 320 QTK~kL~n~~v~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~~ar~aakkar~~~~~k 380 (622)
|||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+ ||||+++|||
T Consensus 350 QTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~aa~aR~--rkare~~rrK 408 (408)
T 3lnu_A 350 QTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASARL--KTEKQIVRKK 408 (408)
T ss_dssp TTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTC-------------
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999995 8999999875
No 3
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=2.4e-96 Score=789.50 Aligned_cols=365 Identities=44% Similarity=0.789 Sum_probs=344.6
Q ss_pred CeecCCCCc-hhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCC
Q 007002 1 MYIGSTGPR-GLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 79 (622)
Q Consensus 1 MYiGst~~~-gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf 79 (622)
||||||+.. ||+|+|+|||+||+||+++|+|++|.|+|+.+|+|+|+|||||||++.||++|+|++|++|+++||||||
T Consensus 24 mYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf 103 (391)
T 1ei1_A 24 MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 103 (391)
T ss_dssp HHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCS
T ss_pred eEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCCEEEEEECCCCcccCcccccCcchHHHhheeccccCCc
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCCCCCCeEEEEEeCcccccc
Q 007002 80 GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 159 (622)
Q Consensus 80 ~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~ 159 (622)
+++ .|++||||||+|+|+|||||++|+|+|+++|+.|+|+|++|+++.++..+ +...++||+|+|+||+++|++
T Consensus 104 ~~~--~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~----~~~~~~GT~V~f~Pd~~~F~~ 177 (391)
T 1ei1_A 104 DDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT----GETEKTGTMVRFWPSLETFTN 177 (391)
T ss_dssp SSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EECSCCEEEEEEEECTTTCCS
T ss_pred CCC--cccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceec----cCcCCCccEEEEEEChhhhCC
Confidence 986 99999999999999999999999999999999999999999998766544 223579999999999999963
Q ss_pred cccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCCCC-CeeEEEeecceeEEEE
Q 007002 160 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDL 238 (622)
Q Consensus 160 ~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l~-~~i~~~~~~~~i~vev 238 (622)
...++++.|.+||+++|++|||++|+|+|++.+ ..+.|+|++||.+||.++++++++++ +++++..+.+++.||+
T Consensus 178 ~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~vev 253 (391)
T 1ei1_A 178 VTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG----KEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEV 253 (391)
T ss_dssp CCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEECCCSHHHHHHHHHHHTSCBSSSCCEEEEEEETTEEEEE
T ss_pred ccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc----ceEEEEcCchHHHHHHHHcCCCcccccccEEEEEecCCEEEEE
Confidence 157999999999999999999999999999853 35789999999999999999888887 5788888888999999
Q ss_pred EEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCC
Q 007002 239 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 318 (622)
Q Consensus 239 al~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~Fe 318 (622)
|++|+ ++|+++++||||+|+|++||||++||++||+++||+|+++.+++|+++.+++++|||+||++||||+++||+|+
T Consensus 254 a~~~~-~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~~~dvregl~avisvki~~P~Fe 332 (391)
T 1ei1_A 254 ALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFS 332 (391)
T ss_dssp EEEEB-SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCCHHHHTTTEEEEEEEECSSCCBS
T ss_pred EEEcc-CCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccCHHHHhhccEEEEEEecCCCCcC
Confidence 99998 78989999999999999999999999999999999999998888876788999999999999999999999999
Q ss_pred CccccccCCchhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007002 319 GQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 376 (622)
Q Consensus 319 gQTK~kL~n~~v~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~~ar~aakkar~~ 376 (622)
||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+||||||++
T Consensus 333 gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 333 SQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp STTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999975
No 4
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=6.8e-97 Score=728.74 Aligned_cols=237 Identities=50% Similarity=0.854 Sum_probs=212.0
Q ss_pred HHhhccccccCCCCCCCCCCCCCCCCCceEEEEeccCCCccccccCCCCceEeeccCCccccccccCHHHHhhCHhHHHH
Q 007002 376 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 455 (622)
Q Consensus 376 ~~~~k~~~~~~~l~gKL~d~~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKilNv~ka~~~ki~~n~Ei~~l 455 (622)
..|||++++...|||||+||++++|++|||||||||||||||+|||||+||||||||||||||++|+.+||++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 34667778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCccCCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCe----EEEe
Q 007002 456 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYC 531 (622)
Q Consensus 456 i~~lG~~~~~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~----~~~~ 531 (622)
++|||||+ +.+||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||+ +.||
T Consensus 101 i~alG~g~-g~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~ 179 (268)
T 3k9f_C 101 IYTIGAGV-GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 179 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEE
T ss_pred HHHhCCCC-CccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEE
Confidence 99999999 577999999999999999999999999999999999999999999999999999999999874 4799
Q ss_pred eCHHHHHHHHHhCCCCCccceeEeecccCCCcchhhhhccCCcceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhc
Q 007002 532 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 611 (622)
Q Consensus 532 ~~~~e~~~~~~~~~~~~~~~i~~~KGLG~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~ 611 (622)
||++|+++|+++++ ++|+||||||||||+|+|||||||||++|+|.+|+++|+.+++++|++|||+++++||+||++|
T Consensus 180 y~e~E~~~~~~~~~--~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~LMG~~v~~Rk~fI~~~ 257 (268)
T 3k9f_C 180 WTDGELEELRKQFG--KGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 257 (268)
T ss_dssp CSHHHHHHHHHHSC--TTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred eCHHHHHHHHHhcC--CCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999999999863 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 007002 612 ANLV 615 (622)
Q Consensus 612 ~~~~ 615 (622)
+.++
T Consensus 258 a~~~ 261 (268)
T 3k9f_C 258 VKFT 261 (268)
T ss_dssp CCCC
T ss_pred hHHh
Confidence 9864
No 5
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=3.8e-93 Score=765.08 Aligned_cols=359 Identities=32% Similarity=0.554 Sum_probs=335.2
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 80 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~ 80 (622)
||||||++ ||+|+|||+|||||+++|+|+.|.|+|+.+|+|+|+|||||||++.||++|+|++|++|+++||||||+
T Consensus 25 mYiGs~~~---~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~ 101 (390)
T 1s16_A 25 MYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 101 (390)
T ss_dssp GTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSS
T ss_pred eeecCCcH---HHHHHHHHHHHHHHHhcCCCCEEEEEEecCCEEEEEECCCCcCcccccccCcchhhheeeeecccCCcC
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCC--CCCCeEEEEEeCccccc
Q 007002 81 GSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVFT 158 (622)
Q Consensus 81 ~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~--~~~GT~V~F~PD~~iF~ 158 (622)
++ .|++||||||+|+|+|||||++|+|+|+++|+.|+|+|++|+++.++.++ +.. .++||+|+|+||+++|.
T Consensus 102 ~~--~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~----g~~~~~~~GT~V~f~Pd~~~F~ 175 (390)
T 1s16_A 102 NK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVV----GTCGKRNTGTSVHFWPDETFFD 175 (390)
T ss_dssp SS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----EECCTTCCEEEEEEEECGGGSS
T ss_pred CC--cccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceec----ccccCCCCceEEEEEECccccC
Confidence 86 99999999999999999999999999999999999999999988766544 222 26899999999999995
Q ss_pred ccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCCCC-CeeEEEeecceeEEE
Q 007002 159 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITID 237 (622)
Q Consensus 159 ~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l~-~~i~~~~~~~~i~ve 237 (622)
+..++++.|.+||+++|++|||++|+|+|++.+ ..+.|+|++||.+||.++++++++++ +++++..+.+++.||
T Consensus 176 -~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~~~~~ve 250 (390)
T 1s16_A 176 -SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD 250 (390)
T ss_dssp -CCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECCSSCHHHHHHHHHTTSCCEEEEEEEEEEECSSEEEE
T ss_pred -cccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc----eeEEEEcCCcHHHHHHHHhCCCcccCCCcEEEEEeeCCEEEE
Confidence 457999999999999999999999999999842 35789999999999999998877777 578888888899999
Q ss_pred EEEEE-cCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCC
Q 007002 238 LALQW-CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPE 316 (622)
Q Consensus 238 val~~-s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~ 316 (622)
+|++| + ++|+++++||||+|+|++||||++||++||+++||+|+++++++| ++.+++++|||+||++||||+++||+
T Consensus 251 ~a~~~~~-~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k-~~~~l~~~dvregl~avisvki~~P~ 328 (390)
T 1s16_A 251 WALLWLP-EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQ 328 (390)
T ss_dssp EEEEECT-TCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSC-TTCCCCHHHHHTTEEEEEEEEESSCC
T ss_pred EEEEecc-CCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCc-cCCccCHHHHhhccEEEEEeecCCCC
Confidence 99999 6 788899999999999999999999999999999999999999888 67789999999999999999999999
Q ss_pred CCCccccccCCchhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007002 317 FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 375 (622)
Q Consensus 317 FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~~ar~aakkar~ 375 (622)
|+||||+||+|++++.+|++++++.|..||++||++++.|+++++.+++||+||||||+
T Consensus 329 FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~aR~aa~kare 387 (390)
T 1s16_A 329 FAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 (390)
T ss_dssp BSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998
No 6
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.9e-94 Score=748.86 Aligned_cols=249 Identities=51% Similarity=0.871 Sum_probs=181.6
Q ss_pred HHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEEeccCCCccccccCCCCceEeeccCCccccccccCHHHHhhCHh
Q 007002 372 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 451 (622)
Q Consensus 372 kar~~~~~k~~~~~~~l~gKL~d~~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKilNv~ka~~~ki~~n~E 451 (622)
+||+++|||+.+....|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+|
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~E 82 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 82 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCHH
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCHH
Confidence 57888999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccCCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEe
Q 007002 452 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 531 (622)
Q Consensus 452 i~~li~~lG~~~~~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~ 531 (622)
|++||+|||||++.++||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||++.||
T Consensus 83 i~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y~ 162 (420)
T 3nuh_B 83 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 162 (420)
T ss_dssp HHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEE
T ss_pred HHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEEe
Confidence 99999999999966789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHhCC------------------------------------------------------------------
Q 007002 532 YDDAELKKVKSSFP------------------------------------------------------------------ 545 (622)
Q Consensus 532 ~~~~e~~~~~~~~~------------------------------------------------------------------ 545 (622)
||++|+++|+.+..
T Consensus 163 ~~~~e~~~~~~~~al~~~~l~~~~~~~~~~g~~L~~l~~~~~~~~~~i~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 242 (420)
T 3nuh_B 163 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 242 (420)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHHHH
T ss_pred CCHHHHHHHHhhccccCeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcccCChhhhcCHHHH
Confidence 99999999976300
Q ss_pred --------------------------------------------------------------------------------
Q 007002 546 -------------------------------------------------------------------------------- 545 (622)
Q Consensus 546 -------------------------------------------------------------------------------- 545 (622)
T Consensus 243 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~l~~~~~~s~ey~~l~~~~~~l~~~~~~~~~ 322 (420)
T 3nuh_B 243 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 322 (420)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHhhhccccccceEEEEeecccCcceeEEEEEEecCcceEEEEChHHhcCHHHHHHHHHHHHHHHhhcCCcE
Confidence
Q ss_pred -----------------------CCCccceeEeecccCCCcchhhhhccCCcceeEEeeccccHHHHHHHHHHhcCCCch
Q 007002 546 -----------------------SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVD 602 (622)
Q Consensus 546 -----------------------~~~~~~i~~~KGLG~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~lmg~~~~ 602 (622)
+.++..||||||||||||+|||||||||++|+|.||+++|+.+||++|++|||+.|+
T Consensus 323 i~~~~~~~~v~~~~~~~~~l~~~~~kG~~IQRYKGLGEMNpeQLWETTMdP~~R~LLqV~IeDa~~AD~iFt~LMGD~VE 402 (420)
T 3nuh_B 323 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVE 402 (420)
T ss_dssp EEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCSCC--
T ss_pred EEeCCcceecCCHHHHHHHHHHHhhccceeeeeccCCCCChhhhhhcccCcccceEEEEEehhHHHHHHHHHHhcCCCch
Confidence 235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCcCCCCC
Q 007002 603 TRKELIQNAANLVNLDHLDI 622 (622)
Q Consensus 603 ~Rk~~i~~~~~~~~~~~~d~ 622 (622)
|||+||++||-. +.||||
T Consensus 403 PRR~FIe~NAL~--V~nLDi 420 (420)
T 3nuh_B 403 PRRAFIEENALK--AANIDI 420 (420)
T ss_dssp --------------------
T ss_pred HhHHHHHhhhcc--cccCCC
Confidence 999999999975 679997
No 7
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=1.1e-92 Score=692.03 Aligned_cols=228 Identities=47% Similarity=0.818 Sum_probs=176.4
Q ss_pred CCCCCCCCCCCceEEEEeccCCCccccccCCCCceEeeccCCccccccccCHHHHhhCHhHHHHHHHhccCccCCcCccc
Q 007002 392 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 471 (622)
Q Consensus 392 L~d~~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKilNv~ka~~~ki~~n~Ei~~li~~lG~~~~~~~~~~~ 471 (622)
..|-.++||++|||||||||||||||+|||||+||||||||||||||++|+.+||++|+||++||+|||||+ +.+||++
T Consensus 9 ~~~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~-g~~~d~~ 87 (242)
T 3m4i_A 9 VDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIG 87 (242)
T ss_dssp ------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCS-GGGCCGG
T ss_pred CCCccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCc-Ccccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999999999999 4679999
Q ss_pred cccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCC-eEEEeeCHHHHHHHHHhCCC-CCc
Q 007002 472 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPS-NAL 549 (622)
Q Consensus 472 ~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk-~~~~~~~~~e~~~~~~~~~~-~~~ 549 (622)
+||||||||||||||||+||++|||||||||||+||++||||+|+||||||++|| ++.||||++|+++|++++.. +++
T Consensus 88 ~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~~~~~~ 167 (242)
T 3m4i_A 88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 167 (242)
T ss_dssp GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHTCC
T ss_pred ccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999987531 233
Q ss_pred c----ceeEeecccCCCcchhhhhccCCcceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcCCCCC
Q 007002 550 Y----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 622 (622)
Q Consensus 550 ~----~i~~~KGLG~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~~~~~~d~ 622 (622)
| +||||||||||+|+|+|||||||++|+|.+|+++|+.+++++|++|||+++++||+||++|+.+ +.+||+
T Consensus 168 ~~k~~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~~~--~~~ld~ 242 (242)
T 3m4i_A 168 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKD--VRFLDV 242 (242)
T ss_dssp CCTTTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC-----------------------
T ss_pred cccccccceEcCcCCCCHHHHHHHhcCccceeeEEeccCcHHHHHHHHHHHhCCCcHHHHHHHHHHhhh--hhhccC
Confidence 5 9999999999999999999999999999999999999999999999999999999999999986 567885
No 8
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=5e-88 Score=726.47 Aligned_cols=364 Identities=42% Similarity=0.672 Sum_probs=343.3
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 80 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~ 80 (622)
||||||+.+|++++++|+|+||+||+++++++.|.|+++.+|+|+|+|||+|||++.++.+|+|++|++|+++|+|+||+
T Consensus 23 myiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~ 102 (390)
T 1kij_A 23 MYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFE 102 (390)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGG
T ss_pred cEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCCEEEEEEcCCCCCHHHhhhccccchhhheeeeeeccccc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCC--CCCCeEEEEEeCccccc
Q 007002 81 GSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVFT 158 (622)
Q Consensus 81 ~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~--~~~GT~V~F~PD~~iF~ 158 (622)
++ .|++++|+||+|+++||++|++++|+|+++|+.|.|+|++|++..++.++ +.. .++||+|+|+||+++|+
T Consensus 103 ~~--~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~----~~~~~~~~GT~V~f~Pd~~~F~ 176 (390)
T 1kij_A 103 QG--AYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVV----GEAPRGKTGTRVTFKPDPEIFG 176 (390)
T ss_dssp GS--SCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----EECGGGCCEEEEEEEECHHHHT
T ss_pred Cc--cccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceee----ccccCCCCCcEEEEEEChHHhC
Confidence 76 88999999999999999999999999999999999999999987665544 222 57999999999999995
Q ss_pred ccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCCCC-CeeEEEeecceeEEE
Q 007002 159 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITID 237 (622)
Q Consensus 159 ~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l~-~~i~~~~~~~~i~ve 237 (622)
+..++++.|.+||+++|++|||++|+|+|++.+ ..+.|+|++||.+||.++++++++++ +++++.++.++++||
T Consensus 177 -~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~----~~~~f~~~~Gl~~~v~~l~~~~~~~~~~~i~~~~~~~~i~ve 251 (390)
T 1kij_A 177 -NLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG----KEEVFLDKGGVASFAKALAEGEDLLYEKPFLIRGTHGEVEVE 251 (390)
T ss_dssp -TCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT----EEEEECCTTHHHHHHHHHTTTSCBSCSSCEEEEEEETTEEEE
T ss_pred -CccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc----ceEEEEcCCcHHHHHHHHhCCCCcCCCCcEEEEeecCCeEEE
Confidence 457999999999999999999999999999842 35789999999999999999888887 578888888899999
Q ss_pred EEEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCC
Q 007002 238 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEF 317 (622)
Q Consensus 238 val~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~F 317 (622)
+|++|+ ++|+++++||||+|+|++||||++||++||++++|+|+++.+++|+++.+++++|||+||++||||+++||+|
T Consensus 252 ~a~~~~-~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~~~dvregl~avisvki~~P~F 330 (390)
T 1kij_A 252 VGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQF 330 (390)
T ss_dssp EEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCTTTTTTTEEEEEEEECSSCCB
T ss_pred EEEEec-CCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcCHHHHhhhcEEEEEeecCCCcc
Confidence 999998 7888999999999999999999999999999999999999999887778999999999999999999999999
Q ss_pred CCccccccCCchhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007002 318 EGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 376 (622)
Q Consensus 318 egQTK~kL~n~~v~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~~ar~aakkar~~ 376 (622)
+||||+||+|++++.+|++++.+.|..||++||+.++.|++|++.+++||+||||||++
T Consensus 331 egQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 331 EGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp CSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999986
No 9
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=1.5e-87 Score=724.26 Aligned_cols=339 Identities=21% Similarity=0.320 Sum_probs=283.7
Q ss_pred CeecCCCC-----------------------chhhHHHHHHHHhHHHhhh-cCCCCeEEEEEeCC-CeEEEEECCCCccC
Q 007002 1 MYIGSTGP-----------------------RGLHHLVYEILDNAVDEAQ-AGYASNIEVALLAD-NSVSVADNGRGIPI 55 (622)
Q Consensus 1 MYiGst~~-----------------------~gL~~lv~EildNaiDe~~-~g~~~~I~V~l~~~-g~i~V~DnGrGIP~ 55 (622)
||||||++ +||||+|+|||+||+||++ +|+|+.|.|+|++| |+|+|+|||||||+
T Consensus 32 MYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~d~~sI~V~DnGrGIPv 111 (418)
T 1pvg_A 32 TYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPI 111 (418)
T ss_dssp HHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTEEEEEEESSCCCC
T ss_pred ceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEEEEEEECCCCEEEEEECCCcccC
Confidence 99999999 8999999999999999995 69999999999988 59999999999999
Q ss_pred cccCCCCcchhhhhheeeccCCCCCCCCCCeeeccccccccceeeeeecCeEEEEEE--eCCEEEEEEEecCc--ccccc
Q 007002 56 DLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGMEYHQKYSRGK--PVTTL 131 (622)
Q Consensus 56 ~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~--r~g~~~~q~f~~G~--~~~~~ 131 (622)
++||++|+|+||+|||+|||||||+++ +|++||||||||+|||||||++|+|+|+ |+|+.|+|+|++|+ +..+
T Consensus 112 ~~h~~~g~~~~E~v~t~LhaGgKfd~~--~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p- 188 (418)
T 1pvg_A 112 EIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP- 188 (418)
T ss_dssp SBCTTTCSBHHHHHHHSSSEESCCCTT--SCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-
T ss_pred cccccCCcccceEEEEEEecccccCCC--ceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-
Confidence 999999999999999999999999987 9999999999999999999999999999 48999999999986 5544
Q ss_pred eeeccCCCCCCCCCeEEEEEeCcccccccccCCHHH---HHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHH
Q 007002 132 TCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 208 (622)
Q Consensus 132 ~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~---i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~ 208 (622)
. +. + ....++||+|+|+||+++|++ ..|+++. |.+||+++|||||||+|+|+|+|.+ .+|+.
T Consensus 189 ~-i~-~-~~~~~tGT~V~F~PD~~iF~~-~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~der~~-----------~~g~~ 253 (418)
T 1pvg_A 189 K-IT-S-YKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGKSLK-----------IRNFK 253 (418)
T ss_dssp E-EE-E-CCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEETTEECC-----------CCSHH
T ss_pred e-ec-c-cCCCCCceEEEEEEChHHcCC-cccCHHHHHHHHHHHHHHHhcCCCCEEEEeccccc-----------cccHH
Confidence 1 21 1 112469999999999999975 5799998 6899999999999999999999842 14888
Q ss_pred HHHHH----HhcCCC---------CCC-CeeEEEeecceeEEEEEEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHH
Q 007002 209 EYVQW----LNTDKK---------PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 274 (622)
Q Consensus 209 ~yv~~----l~~~~~---------~l~-~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al 274 (622)
+|+++ ++.+++ +++ +++++..+.. +||||+||+ +++ ++++||||+|+|++||||++||+++|
T Consensus 254 ~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~~--~vevA~~~~-~~~-~~~~SFvN~I~T~~GGTH~~g~~~al 329 (418)
T 1pvg_A 254 NYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN--RWEVAFAVS-DIS-FQQISFVNSIATTMGGTHVNYITDQI 329 (418)
T ss_dssp HHHHTTTTTC-----------------CCSCEEEEEET--TEEEEEEEC-SSS-CEEEEEETTEECTTCBHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccccccccccCCCCCCEEEEEecc--eEEEEEEEc-CCC-ceEEEEeCceeCCCCCcHHHHHHHHH
Confidence 88875 355554 565 5777766543 589999998 565 67999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCCchhhhhhhhhhHHHHHHHHhhChHHHH
Q 007002 275 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 354 (622)
Q Consensus 275 ~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~np~~~~ 354 (622)
++++++|+++++ +.+++++||||||++||||+++||+|+||||+||+|++.+...+++++++|..||++ +
T Consensus 330 ~~~i~~~~~k~~-----~~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~~v~~~~v~e~l~~~l~~-----~ 399 (418)
T 1pvg_A 330 VKKISEILKKKK-----KKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPLEYINKIMK-----T 399 (418)
T ss_dssp HHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGSSSCCCCCHHHHHHHTT-----S
T ss_pred HHHHHHHHHhcc-----cCCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCcccccccccchhHHHHHHHhh-----h
Confidence 999999987532 357999999999999999999999999999999999776544447999999999985 5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007002 355 SILSKSLSALKAALAAK 371 (622)
Q Consensus 355 ~I~~k~~~~~~ar~aak 371 (622)
.|+++++.+++||+||+
T Consensus 400 ~iv~ki~~~a~ar~aa~ 416 (418)
T 1pvg_A 400 DLATRMFEIADANEENA 416 (418)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56666666667776654
No 10
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=3.8e-87 Score=718.01 Aligned_cols=343 Identities=21% Similarity=0.285 Sum_probs=289.8
Q ss_pred CeecCCC----------------------CchhhHHHHHHHHhHHHhhh-cCCCCeEEEEEeCC-CeEEEEECCCCccCc
Q 007002 1 MYIGSTG----------------------PRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLAD-NSVSVADNGRGIPID 56 (622)
Q Consensus 1 MYiGst~----------------------~~gL~~lv~EildNaiDe~~-~g~~~~I~V~l~~~-g~i~V~DnGrGIP~~ 56 (622)
||||||+ .+||||+|+||||||+||++ +|+|+.|.|+|+.+ |+|+|+|||||||++
T Consensus 21 mYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~~~I~V~DnGrGIPv~ 100 (400)
T 1zxm_A 21 TYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVV 100 (400)
T ss_dssp HHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTTEEEEEEESSCCCCS
T ss_pred cEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCCCEEEEEECCCcccCc
Confidence 9999999 68999999999999999995 79999999999986 899999999999999
Q ss_pred ccCCCCcchhhhhheeeccCCCCCCCCCCeeeccccccccceeeeeecCeEEEEEEe--CCEEEEEEEecCcccccceee
Q 007002 57 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWR--DGMEYHQKYSRGKPVTTLTCH 134 (622)
Q Consensus 57 ~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r--~g~~~~q~f~~G~~~~~~~~~ 134 (622)
.||++|+|++|++|++|||||||+++ .|++||||||+|+|+|||||++|+|++++ +|+.|+|+|++|++..+++.+
T Consensus 101 ~h~~~~~~~~e~v~t~lhagsKf~~~--~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~i 178 (400)
T 1zxm_A 101 EHKVEKMYVPALIFGQLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMEL 178 (400)
T ss_dssp EETTTTEEHHHHHHHSSSEESCCCGG--GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEE
T ss_pred cccccCccchhheeeeecccCCCCCC--cccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCccee
Confidence 99999999999999999999999986 99999999999999999999999999998 589999999999887665443
Q ss_pred ccCCCCCCCCCeEEEEEeCcccccccccCCHHH---HHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHH
Q 007002 135 VLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 211 (622)
Q Consensus 135 ~~~~~~~~~~GT~V~F~PD~~iF~~~~~~~~~~---i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv 211 (622)
. ....++||+|+|+||+++|+ ...|+++. |.+||+++|+||||++|+|+|+|.+ ++||.+||
T Consensus 179 g---~~~~~~GT~V~F~Pd~~iF~-~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der~~-----------~~Gi~~yv 243 (400)
T 1zxm_A 179 K---PFNGEDYTCITFQPDLSKFK-MQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP-----------VKGFRSYV 243 (400)
T ss_dssp E---ECCSCCEEEEEEEECGGGGT-CSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC-----------CCSHHHHH
T ss_pred c---cCCCCCccEEEEEEChHHhC-ceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC-----------CCCHHHHH
Confidence 1 22346899999999999996 45799998 8899999999999999999998842 37999999
Q ss_pred HHHhcCCCCCCC-eeEEEeecceeEEEEEEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCC
Q 007002 212 QWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD 290 (622)
Q Consensus 212 ~~l~~~~~~l~~-~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~ 290 (622)
++++.+++++++ ++.+..+.++++||||+||++++| +++||||+|+|++||||++||++||+++||+|+++++ +
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~--~~~sfvN~I~T~~GGTH~~gfr~altr~i~~y~~k~~---k 318 (400)
T 1zxm_A 244 DMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGF--QQISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKN---K 318 (400)
T ss_dssp HHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSC--EEEEEETTEECTTEEHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHhcCCCccCCCCcceEEeecCcEEEEEEEEcCCCc--eEEEEeCCccCCCCCcHHHHHHHHHHHHHHHHHHHhc---c
Confidence 999988877763 332223446678999999985477 3799999999999999999999999999999998762 3
Q ss_pred CCCCCCHHhHhcccEEEEEEeecCCCCCCccccccCCchhhhhhhh-hhHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Q 007002 291 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ-SVQEYLTEYLELHPDVLDSILSKSLSALKAA 367 (622)
Q Consensus 291 ~~~~l~~~diregl~~~vs~~i~nP~FegQTK~kL~n~~v~~~v~~-~v~~~l~~~l~~np~~~~~I~~k~~~~~~ar 367 (622)
++.+++++||||||++||||+++||+|+||||+||+|+++ .+++. ++++.|..|| .||++++.|+++|+.+++++
T Consensus 319 ~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~~~~~l-~~~~~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 319 GGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEKFIKAA-IGCGIVESILNWVKFKAQVQ 394 (400)
T ss_dssp ---CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHHHHHHH-TTC-----------------
T ss_pred cCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHHHHHHH-cChHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999987 77877 9999999999 89999999999998766543
No 11
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=1.3e-86 Score=748.02 Aligned_cols=253 Identities=43% Similarity=0.697 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEEeccCCCccccccCCCCceEeeccCCcccc
Q 007002 358 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 437 (622)
Q Consensus 358 ~k~~~~~~ar~aakkar~~~~~k~~~~~~~l~gKL~d~~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKilN 437 (622)
++++.+++||++++++ .+||+.++...|||||+||++++|++|||||||||||||||||||||+|||||||||||||
T Consensus 2 ~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiLN 78 (767)
T 2xkj_E 2 EMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILN 78 (767)
T ss_dssp --------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCCC
T ss_pred hHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchhh
Confidence 5778888888755443 2367778888999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHhhCHhHHHHHHHhccCccCCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecC
Q 007002 438 VERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 517 (622)
Q Consensus 438 v~ka~~~ki~~n~Ei~~li~~lG~~~~~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~t 517 (622)
|++|+.+||++|+||++|++|||||++. +|+++||||||||||||||||+||++|||||||||||+||++||||+|+|
T Consensus 79 v~ka~~~ki~~n~Ei~~i~~alG~~~g~--~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~p 156 (767)
T 2xkj_E 79 TWEVSSDEVLASQEVHDIAIAIGVDPGS--DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 156 (767)
T ss_dssp CTTSCTTTGGGSHHHHHHHHHHTCCTTC--CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECC
T ss_pred hhcCCHHHHhccHHHHHHHHHhCCCccc--ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEecC
Confidence 9999999999999999999999999953 49999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCeEEEeeCHHHHHHHHHhCCCCCccceeEeecccCCCcchhhhhccCCcceeEEeeccccHHHHHHHHHHhc
Q 007002 518 PLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 597 (622)
Q Consensus 518 Pl~kv~~gk~~~~~~~~~e~~~~~~~~~~~~~~~i~~~KGLG~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~lm 597 (622)
||||+++||++.||||++|+++|++++++.++|+||||||||||+|+|+|||||||++|+|.+|+++|+..++++|++||
T Consensus 157 Pl~kv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~lm 236 (767)
T 2xkj_E 157 PLFRIDIGKDVHYALDDEELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKLL 236 (767)
T ss_dssp CSEEEEETTEEEEESSHHHHHHHHHTCCSSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeeCHHHHHHHHHHhhcCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999865567999999999999999999999999999999999999988999999999
Q ss_pred CC-CchHHHHHHHhccccC
Q 007002 598 GA-RVDTRKELIQNAANLV 615 (622)
Q Consensus 598 g~-~~~~Rk~~i~~~~~~~ 615 (622)
|+ ++++||+||++|+..+
T Consensus 237 gkk~ve~RKewI~~~~~~~ 255 (767)
T 2xkj_E 237 AKKRAADRKQWLEQKGNLA 255 (767)
T ss_dssp CGGGHHHHHHHHHHHGGGC
T ss_pred CCCCchHHHHHHHhcCccc
Confidence 98 6999999999998754
No 12
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=6.4e-82 Score=672.84 Aligned_cols=331 Identities=30% Similarity=0.533 Sum_probs=301.1
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 80 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~ 80 (622)
||||||+.+||+|+|+||||||+||+++|+|++|.|+|+++|+|+|+|||||||+ |++| ++||||||+
T Consensus 21 mYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~DnGrGIp~-----------e~v~-~lhagsKf~ 88 (369)
T 3cwv_A 21 MYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTA-----------ENLV-RVATGAGFL 88 (369)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCH-----------HHHH-HHHTTTTGG
T ss_pred eEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEECCCCcCH-----------hHee-eeecCCCcC
Confidence 9999999999999999999999999999999999999999999999999999998 6789 999999998
Q ss_pred CCC--CCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcc------cccceeeccCCCCCCCCCeEEEEEe
Q 007002 81 GSS--SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP------VTTLTCHVLPVDSKDRQGTRIRFWP 152 (622)
Q Consensus 81 ~~~--~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~------~~~~~~~~~~~~~~~~~GT~V~F~P 152 (622)
+.+ +.|+++| |+|+|||||++|+|+|+++|+.|+|+|++|++ +.++.++ +...++||+|+|+|
T Consensus 89 ~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G~~~~~~~~~~~l~~~----g~~~~~GT~V~f~P 159 (369)
T 3cwv_A 89 GRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPM----PVSAERGVRVHFVP 159 (369)
T ss_dssp GSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCC----SSCCSEEEEEEEEE
T ss_pred CCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCCcccccccccCCceEe----cccCCCCCEEEEEE
Confidence 732 3898884 89999999999999999999999999999998 6555433 33457999999999
Q ss_pred CcccccccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCCCC-CeeEEEeec
Q 007002 153 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDV 231 (622)
Q Consensus 153 D~~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l~-~~i~~~~~~ 231 (622)
|+++|. +..++++.|.+||+++|++|||++|+|+|++.+ .++.|+|++||.+||.++++++++++ +++++..+.
T Consensus 160 d~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~~~~ 234 (369)
T 3cwv_A 160 DATIFE-VLAFDRARLSRRCNELAALAPGLRVSFADLQRG----ERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTW 234 (369)
T ss_dssp CTTTCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEEECTTHHHHHHHHHHTTSCBSSSSCEEEEEEE
T ss_pred CHHHhC-CccccHHHHHHHHHHHcCcCCCcEEEEEeCCCC----eeEEEEeCchHHHHHHHHhcCCcccCCCcEEEEEec
Confidence 999995 567999999999999999999999999999853 36889999999999999999887777 578888888
Q ss_pred ceeEEEEEEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEe
Q 007002 232 DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 311 (622)
Q Consensus 232 ~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~ 311 (622)
+++.|++|++|+ ++|++.++||||+|+|++||||++||++||++++++|++ +++.+++++|||+||++||||+
T Consensus 235 ~~i~ve~a~~~~-~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k------~~~~~l~~~dvregl~avisvk 307 (369)
T 3cwv_A 235 DGLRVQCALQWC-EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWARVAQGLTAIVAVS 307 (369)
T ss_dssp TTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHHHHTTTEEEEEEEE
T ss_pred CCEEEEEEEEec-CCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHh------hcCCCcCHHHHhhccEEEEEec
Confidence 899999999998 789999999999999999999999999999999999993 2245799999999999999999
Q ss_pred ecCCC--CCCccccccCCchhhhhhhhhhHHHHHHHHhhChHHHHHHHHHHHHHH
Q 007002 312 VPNPE--FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 364 (622)
Q Consensus 312 i~nP~--FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ 364 (622)
++||+ |+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.++
T Consensus 308 ~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 308 GPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369)
T ss_dssp CCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred cCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 99999 999999999999999999999999999999999999999999998764
No 13
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=2.8e-77 Score=665.06 Aligned_cols=229 Identities=28% Similarity=0.451 Sum_probs=212.3
Q ss_pred CCCCCCCCCCC---CCCCCCceEEEEeccCCCccccccCC---CCceEeeccCCccccccccCHHHHhhCHhHHHHHHHh
Q 007002 386 SSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 459 (622)
Q Consensus 386 ~~l~gKL~d~~---~~~~~~~eL~lvEGDSA~gsa~~gRd---r~~qai~PLrGKilNv~ka~~~ki~~n~Ei~~li~~l 459 (622)
.++| ||+||+ +++|++|||||||||||||||+|||+ |+||||||||||||||++|+.+||++|+||++|++||
T Consensus 4 ~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~al 82 (757)
T 3l4j_A 4 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIM 82 (757)
T ss_dssp CSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHT
T ss_pred CCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHHh
Confidence 3577 999996 79999999999999999999999884 8899999999999999999999999999999999999
Q ss_pred ccCccCCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhh-cCcEEEecCCeEEEE---eCCeEEEeeCHH
Q 007002 460 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE---RGKQVQYCYDDA 535 (622)
Q Consensus 460 G~~~~~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~-~g~v~~~~tPl~kv~---~gk~~~~~~~~~ 535 (622)
||+++.++||+++||||||||||||||||+||++|||||||||||+||+ +||||+|+||||+|+ +||++.||||++
T Consensus 83 G~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~~ 162 (757)
T 3l4j_A 83 GLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 162 (757)
T ss_dssp TCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHH
T ss_pred CCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCHH
Confidence 9999766679999999999999999999999999999999999999999 899999999999999 789999999999
Q ss_pred HHHHHHHhCCCCCccceeEeecccCCCcchhhhhc--cCCcceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccc
Q 007002 536 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT--LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 613 (622)
Q Consensus 536 e~~~~~~~~~~~~~~~i~~~KGLG~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~ 613 (622)
|+++|+++++..++|+||||||||||+|+|+|||| |||++|.|.+++++|+..++++|+ .+++++||+||++|++
T Consensus 163 E~~~~~~~~~~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~---~~~~~~Rk~wi~~~~~ 239 (757)
T 3l4j_A 163 DYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFS---KKKADDRKEWLRQYEP 239 (757)
T ss_dssp HHHHHHHHTGGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHC---TTCHHHHHHHHHHCCT
T ss_pred HHHHHHHHhccCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhC---cCcchHHHHHHHhcCC
Confidence 99999998754567999999999999999999975 568889999999999887888886 3689999999999999
Q ss_pred cCCcC
Q 007002 614 LVNLD 618 (622)
Q Consensus 614 ~~~~~ 618 (622)
..+++
T Consensus 240 ~~~ld 244 (757)
T 3l4j_A 240 GTVLD 244 (757)
T ss_dssp TCCCC
T ss_pred ccccc
Confidence 76654
No 14
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=1.1e-76 Score=660.76 Aligned_cols=221 Identities=34% Similarity=0.531 Sum_probs=157.9
Q ss_pred CCCCCCCCCC---CCCCCCCceEEEEeccCCC-----ccccccCCCCceEeeccCCccccccccCHHHHhhCHhHHHHHH
Q 007002 386 SSLPGKLADC---SSTTPEESEIFIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 457 (622)
Q Consensus 386 ~~l~gKL~d~---~~~~~~~~eL~lvEGDSA~-----gsa~~gRdr~~qai~PLrGKilNv~ka~~~ki~~n~Ei~~li~ 457 (622)
.++| ||+|| +++||++|||||||||||| |||+||||| |||||||||||||++|+.+||++|+||++|++
T Consensus 34 ~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~ 110 (803)
T 3qx3_A 34 KGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 110 (803)
T ss_dssp CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred CCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHHH
Confidence 4677 99999 6899999999999999999 999999999 89999999999999999999999999999999
Q ss_pred HhccCccCC---cCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCH
Q 007002 458 ALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 534 (622)
Q Consensus 458 ~lG~~~~~~---~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~~~~ 534 (622)
|||||++.+ .+|+++||||||||||||||||+||++|||||||||||+||+.||||+|+||||||++||++.||||+
T Consensus 111 alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys~ 190 (803)
T 3qx3_A 111 IVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSI 190 (803)
T ss_dssp HHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC-----------------
T ss_pred HhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEecH
Confidence 999999643 25899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccceeEeecccCCCcchhhhhccCCc-ceeEEeecc-ccHHHHHHHHHHhcCCCchHHHHHHHhcc
Q 007002 535 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE-QRMLKQLVI-EDAAEANVVFSSLMGARVDTRKELIQNAA 612 (622)
Q Consensus 535 ~e~~~~~~~~~~~~~~~i~~~KGLG~~~~~~~~~~~~~~~-~~~~~~~~~-~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~ 612 (622)
+|+++|++++...++|+||||||||||+|+|+|||||||. +|.+.+++. +|.+.++++|+ |+++++||+||++|+
T Consensus 191 ~e~~~~~~~~~~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~---k~~~~~RK~wi~~~~ 267 (803)
T 3qx3_A 191 PEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS---KKKIDDRKEWLTNFM 267 (803)
T ss_dssp -----------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHC---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhc---CCChHHHHHHHHHhh
Confidence 9999999887555679999999999999999999999986 555555652 44444555555 577999999999998
No 15
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=7.9e-73 Score=629.27 Aligned_cols=196 Identities=59% Similarity=0.974 Sum_probs=185.1
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEEeccCCCccccccCCCCceEeeccCCccccccccCHHHHhhCHhHHHHHHHhccCcc
Q 007002 385 SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK 464 (622)
Q Consensus 385 ~~~l~gKL~d~~~~~~~~~eL~lvEGDSA~gsa~~gRdr~~qai~PLrGKilNv~ka~~~ki~~n~Ei~~li~~lG~~~~ 464 (622)
...|||||+||++++|++|||||||||||||||+|||||+||||||||||||||++|+.+|+++|+||++|++|||||++
T Consensus 3 ~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~g 82 (692)
T 2xcs_B 3 VASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGIG 82 (692)
T ss_dssp ------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCCG
T ss_pred CCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCcC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCcCccccccceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhC
Q 007002 465 GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 544 (622)
Q Consensus 465 ~~~~~~~~LRY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~~~~~e~~~~~~~~ 544 (622)
.+||+++||||||||||||||||+||+||||||||||||+||++||||+++||+
T Consensus 83 -~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~------------------------- 136 (692)
T 2xcs_B 83 -GDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT------------------------- 136 (692)
T ss_dssp -GGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS-------------------------
T ss_pred -ccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch-------------------------
Confidence 668999999999999999999999999999999999999999999999999994
Q ss_pred CCCCccceeEeecccCCCcchhhhhccCCcceeEEeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccC
Q 007002 545 PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 615 (622)
Q Consensus 545 ~~~~~~~i~~~KGLG~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~ 615 (622)
||||||||+|+|+|||||||++|++.+|+++|+.+++++|++|||+++++||+||++|+...
T Consensus 137 ---------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~ 198 (692)
T 2xcs_B 137 ---------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYA 198 (692)
T ss_dssp ---------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCC
T ss_pred ---------hhcccccCCHHHHHHHhcCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCcc
Confidence 69999999999999999999999999999999988999999999999999999999998764
No 16
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=1.2e-56 Score=445.43 Aligned_cols=195 Identities=49% Similarity=0.852 Sum_probs=173.5
Q ss_pred CeecCCCC-chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCC
Q 007002 1 MYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 79 (622)
Q Consensus 1 MYiGst~~-~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf 79 (622)
||||||+. +||+|+|+|||+||+||+++|+|++|.|+|+.+|+|+|+|||||||+++||++|+|++|++||+|||||||
T Consensus 25 mYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kf 104 (220)
T 4duh_A 25 MYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF 104 (220)
T ss_dssp HHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCC
T ss_pred eEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcEEEEECCcCcccccccccCcchhhheeeecccCCCc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCCCCCCeEEEEEeCcccccc
Q 007002 80 GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 159 (622)
Q Consensus 80 ~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~ 159 (622)
+++ .|++||||||+|+|+|||||++|+|+++|+|+.|+|+|++|+++.++..+ +.+.++||+|+|+||+++|.+
T Consensus 105 d~~--~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~~----g~~~~~GT~V~F~Pd~~~F~~ 178 (220)
T 4duh_A 105 DDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT----GETEKTGTMVRFWPSLETFTN 178 (220)
T ss_dssp CTT--C--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSSCEEE----EECSCCEEEEEEEECTTTCCS
T ss_pred CCC--ccccccCccceecchhcccccceEEEEEECCEEEEEEecCCcCcCCceec----cccCCCCcEEEEEECHHHhCC
Confidence 987 89999999999999999999999999999999999999999999877655 345679999999999999986
Q ss_pred cccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCC
Q 007002 160 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 205 (622)
Q Consensus 160 ~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~ 205 (622)
+..|+++.|.+||+++|+|||||+|+|+|+|.. +.++|+|++
T Consensus 179 ~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~~~y~g 220 (220)
T 4duh_A 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG----KEDHFHYEG 220 (220)
T ss_dssp SCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTC----CEEEEC---
T ss_pred cccCCHHHHHHHHHHHHhcCCCCEEEEEccCCC----cEEEEEcCC
Confidence 547999999999999999999999999999953 467899975
No 17
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=3.2e-55 Score=436.17 Aligned_cols=193 Identities=50% Similarity=0.846 Sum_probs=167.5
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 80 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~ 80 (622)
||||||+.+||+|+|+|||+||+||+++|+|+.|.|+|+.+|+|+|+|||||||++.| ++|+|++|++||+|||||||+
T Consensus 31 mYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~h-~~~~~~~e~v~t~lhag~Kfd 109 (226)
T 4emv_A 31 MYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGMH-AMGIPTVEVIFTILHAGGKFG 109 (226)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC-GGGCBHHHHHHHCBC------
T ss_pred eEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCcccccc-ccCceehheeEEeecccCccC
Confidence 9999999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecC-cccccceeeccCCCCC--CCCCeEEEEEeCcccc
Q 007002 81 GSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSK--DRQGTRIRFWPDKQVF 157 (622)
Q Consensus 81 ~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G-~~~~~~~~~~~~~~~~--~~~GT~V~F~PD~~iF 157 (622)
++ .|++|||+||+|+|+|||||++|+|+++|+|+.|+|+|++| +++.+++.+ +.. .++||+|+|+||+++|
T Consensus 110 ~~--~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg~~~~~l~~i----g~~~~~~~GT~V~F~PD~~iF 183 (226)
T 4emv_A 110 QG--GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKI----GTALKSKTGTKVTFMPDATIF 183 (226)
T ss_dssp ----------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTTEESSCSEEE----EECCTTCCEEEEEEEECTTTC
T ss_pred cc--ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCCEEcCCceEe----cccCCCCCCeEEEEEECHHHc
Confidence 87 89999999999999999999999999999999999999999 888877654 222 6799999999999999
Q ss_pred cccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCC
Q 007002 158 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 205 (622)
Q Consensus 158 ~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~ 205 (622)
.. ..|+++.|.+||+++|+|||||+|+|+|+|.. ..++|+|++
T Consensus 184 ~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~f~y~g 226 (226)
T 4emv_A 184 ST-TDFKYNTISERLNESAFLLKNVTLSLTDKRTD----EAIEFHYEN 226 (226)
T ss_dssp SC-CCCCHHHHHHHHHHHHHHHCSCEEEEEETTTC----CEEEECCCC
T ss_pred CC-CCcCHHHHHHHHHHHhhcCCCCEEEEEecCCC----cEEEEEcCC
Confidence 64 57999999999999999999999999999964 357899975
No 18
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=1.3e-48 Score=383.78 Aligned_cols=191 Identities=42% Similarity=0.729 Sum_probs=154.9
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 80 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~ 80 (622)
||||||++ +++|+|||+||+||+++|+|++|.|+|+.+|+|+|+|||+|||++.||++|+|++|++|+++||||||+
T Consensus 11 myig~~~~---~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~ 87 (201)
T 3fv5_A 11 MYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 87 (201)
T ss_dssp GTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------
T ss_pred cEECCCCh---hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcC
Confidence 99999997 999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCCCCCCeEEEEEeCccccccc
Q 007002 81 GSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 160 (622)
Q Consensus 81 ~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~ 160 (622)
++ .|++|+|+||+|++++||||++|+|+++++|+.|.|+|++|+++.+++.+.. ....++||+|+|+||+++|. +
T Consensus 88 ~~--~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G~~~~~~~~~g~--~~~~~~GT~V~f~Pdr~~F~-~ 162 (201)
T 3fv5_A 88 NK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT--CGKRNTGTSVHFWPDETFFD-S 162 (201)
T ss_dssp ----------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEE--CCTTCCEEEEEEEECGGGSS-C
T ss_pred CC--cccccCcccceecchhhcccceEEEEEEecCceEEEEEeCCEEcccceeccc--CCCCCCCeEEEEEECHHHcC-C
Confidence 86 8999999999999999999999999999999999999999999876654410 11257999999999999995 5
Q ss_pred ccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEe
Q 007002 161 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 203 (622)
Q Consensus 161 ~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~ 203 (622)
..++++.|.+||+++|++||||+|+|++++.. +.++|||
T Consensus 163 ~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~----~~~~~~y 201 (201)
T 3fv5_A 163 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCY 201 (201)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECC
T ss_pred CccCHHHHHHHHHHHHHhCCCCEEEEEecCCC----cEEEEEC
Confidence 67999999999999999999999999999964 3567776
No 19
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=2.8e-46 Score=365.67 Aligned_cols=177 Identities=49% Similarity=0.798 Sum_probs=160.1
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 80 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~ 80 (622)
||||||+.+||+|+|+|||+||+||++||+|+.|.|+|+.+|+|+|+|||||||++.|+..+++.+|++|+
T Consensus 22 mYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~DnG~Gip~~~h~~~~~~~~e~i~t--------- 92 (198)
T 3ttz_A 22 MYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILT--------- 92 (198)
T ss_dssp HHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEECSSCCCCSBCTTTSSBHHHHHHH---------
T ss_pred cEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEECCCCccccccCcCCCccccccce---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEecCcccccceeeccCCCCCCCCCeEEEEEeCccccccc
Q 007002 81 GSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 160 (622)
Q Consensus 81 ~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~ 160 (622)
+|+|||||++|+|+++|+|+.|+|+|++|+++.+++.+ +.+.++||+|+|+||+++|..+
T Consensus 93 ----------------~SvVNALS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~i----~~~~~~GT~V~F~Pd~~iF~~~ 152 (198)
T 3ttz_A 93 ----------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV----GTTDKTGTVIRFKADGEIFTET 152 (198)
T ss_dssp ----------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EECSCCEEEEEEEECTTTCCSC
T ss_pred ----------------eEehhhhcCeEEEEEEECCcEEEEEEeCCEECCCceec----cCCCCCCcEEEEEECHHHhccC
Confidence 99999999999999999999999999999998887655 3346799999999999999434
Q ss_pred ccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcH
Q 007002 161 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 207 (622)
Q Consensus 161 ~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl 207 (622)
..|+++.|.+||+++|+|||||+|+|+|+|...+ ++.++|+|++||
T Consensus 153 ~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~-~~~~~f~~~gGi 198 (198)
T 3ttz_A 153 TVYNYETLQQRIRELAFLNKGIQITLRDERDEEN-VREDSYHYEGGI 198 (198)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTS-CEEEEECCC---
T ss_pred CccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCC-cceEEEEcCCCC
Confidence 5799999999999999999999999999995311 135899999996
No 20
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=2.8e-38 Score=355.36 Aligned_cols=287 Identities=19% Similarity=0.208 Sum_probs=222.6
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhh-cCCCCeEEEEEeCCC----eEEEEECCCCccCcccCCCCcchhhhhheeecc
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLADN----SVSVADNGRGIPIDLHPATNKSALETVLTVLHA 75 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~-~g~~~~I~V~l~~~g----~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~a 75 (622)
||...++..+|+++++|||+||+|+.. +|+++.|.|+++.++ .|+|+|||+|||.+.+ +.+|+.+|+
T Consensus 28 ~~~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l--------~~iF~~~~a 99 (621)
T 2q2e_B 28 ILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQI--------PKVFAKLLY 99 (621)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGH--------HHHHSCCCC
T ss_pred eeEEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHH--------HHHhhhhcc
Confidence 666677889999999999999999997 677889999998655 6999999999999874 458999999
Q ss_pred CCCCCCCCCCeeeccccccccceeeeeecCeE-----EEEEEeCC--EEEEEEE----ecCcccccceeeccCCCCCCCC
Q 007002 76 GGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWRDG--MEYHQKY----SRGKPVTTLTCHVLPVDSKDRQ 144 (622)
Q Consensus 76 g~kf~~~~~~~k~sgG~~GvG~s~vNalS~~~-----~V~v~r~g--~~~~q~f----~~G~~~~~~~~~~~~~~~~~~~ 144 (622)
+++|.. ++.++|.||+|+++++++|+.+ +|++.+++ ..+.++| .+|.+....... .+...++
T Consensus 100 tskf~~----~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~---~~~~~~~ 172 (621)
T 2q2e_B 100 GSRFHA----LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEV---RDWFRPH 172 (621)
T ss_dssp C--CCC----CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEE---CCCSCSS
T ss_pred CCcccc----ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccc---ccCCCCC
Confidence 999974 4678899999999999999985 89998876 7899999 677765421111 1334579
Q ss_pred CeEEEEEeCcccccccccCCH---HHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCCC
Q 007002 145 GTRIRFWPDKQVFTTAIQFDH---NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPL 221 (622)
Q Consensus 145 GT~V~F~PD~~iF~~~~~~~~---~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~l 221 (622)
||+|+|+ |.. .++. +.|.+||+++|++|||++|+|++++. +.|+|++|+ ..++....++
T Consensus 173 GT~V~~~-----f~~--~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~~-------~~~~~~gg~----~~L~~~~~~i 234 (621)
T 2q2e_B 173 GTQIELE-----MRA--AYVKGRRQSIYEYLKATAIVNPHARITLIDPDG-------NEEVFERAT----DKMPEPAEEI 234 (621)
T ss_dssp CCCEEEE-----CSC--CCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTS-------CCEEEECCC----CCCCCCCCCC
T ss_pred CCEEEEE-----ecC--ccchHHHHHHHHHHHHHHhhCCCCEEEEEECCc-------eEEEeCCcc----cchhcccccc
Confidence 9999999 532 2443 78999999999999999999999872 579999987 3445555555
Q ss_pred CCeeEEEeecceeEEEEEEEEcCCCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCC-CCCCCCHHhH
Q 007002 222 HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD-KDISLSGEHV 300 (622)
Q Consensus 222 ~~~i~~~~~~~~i~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~-~~~~l~~~di 300 (622)
++.++ +...+ .++++++|+ ++| ++.||||+++|++|| +++|+|+++.++.|+ ++.+++++||
T Consensus 235 ~p~~~--G~~~~-~~eval~~~-~~~--~i~sFvN~i~T~~GG-----------r~in~~~~~~~l~k~~~~~~lt~dDi 297 (621)
T 2q2e_B 235 LPHPE--GIELG-TLMKMLHYT-ERQ--KLAPFLRYSFCKIGL-----------LTAEEICKAAGLDPEIDPHALGRHEA 297 (621)
T ss_dssp CCCST--TCCHH-HHHHHHHHC-C-------CTTSSSSCC--C-----------HHHHHHHHTTTCCTTSCSSSCCSSSS
T ss_pred cCCce--eeccC-eEEEEEeeC-CCe--EEEEEeCCcccCCCH-----------HHHHHHHHHhCccccccCCCCCHHHH
Confidence 43221 11112 467788887 666 599999999999999 678899999888776 5678999999
Q ss_pred hcccEEEEEEeecCCCCCCccccccCCchhhhhhhhhhHHHHHHHHh
Q 007002 301 REGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 347 (622)
Q Consensus 301 regl~~~vs~~i~nP~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~ 347 (622)
|+||++|+||++++|+|+ .++.+++..+.+.|.+||.
T Consensus 298 regL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 298 RKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp TTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred HhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 999999999999999755 5677888888888888884
No 21
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.7e-23 Score=217.33 Aligned_cols=264 Identities=16% Similarity=0.161 Sum_probs=177.9
Q ss_pred chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCCC-
Q 007002 9 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG- 85 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~- 85 (622)
..+.++++|+|+||+|+ | ++.|.|.+..+| .|+|.|||+|||.+.++. +| ..|+++|+.+.++.
T Consensus 24 ~~~~~vv~eLv~NaiDA---~-a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~--------~~-~~~~tsK~~~~~Dl~ 90 (367)
T 3h4l_A 24 TDLTTAVKELVDNSIDA---N-ANQIEIIFKDYGLESIECSDNGDGIDPSNYEF--------LA-LKHYTSKIAKFQDVA 90 (367)
T ss_dssp CSHHHHHHHHHHHHHHT---T-CSEEEEEEETTTTSEEEEEECSCCCCGGGTTT--------TT-CCEEC---------C
T ss_pred cCHHHHHHHHHHHHHHC---C-CCEEEEEEEeCCEEEEEEEECCCCcChhHhcc--------ce-eccccCcCCchhhhh
Confidence 56899999999999997 3 889999998666 799999999999997642 44 45888887653223
Q ss_pred eeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEe-cCcccccceeeccCCCCCCCCCeEEEE------EeCccc-
Q 007002 86 YSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYS-RGKPVTTLTCHVLPVDSKDRQGTRIRF------WPDKQV- 156 (622)
Q Consensus 86 ~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~-~G~~~~~~~~~~~~~~~~~~~GT~V~F------~PD~~i- 156 (622)
...|+|+||+|+++++++| +++|+|++++ ..|.++|. +|.+.... +...++||+|+| +|++.+
T Consensus 91 ~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-------~~~~~~GTtV~v~~LF~n~P~R~k~ 162 (367)
T 3h4l_A 91 KVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-------TTSRNKGTTVLVSQLFHNLPVRQKE 162 (367)
T ss_dssp CCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-------EECCSSEEEEEEESTTTTCHHHHHH
T ss_pred hhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-------cccCCCCeEEEEchhhccCchhhhh
Confidence 3689999999999999999 6999999887 78999997 67765332 124578999999 599988
Q ss_pred ccccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeC--CcHHHHHHHHhcCCCCCCCeeEEEe-----
Q 007002 157 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEEYVQWLNTDKKPLHDVVGFRK----- 229 (622)
Q Consensus 157 F~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~--~Gl~~yv~~l~~~~~~l~~~i~~~~----- 229 (622)
|..+...++..|.++++++|+++|+++|+|.+..... .....|... +.+.+-+..+.+.... ..-+.+..
T Consensus 163 flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~--~~~~~~~t~~~~~~~~~i~~i~G~~~~-~~l~~v~~~~~~~ 239 (367)
T 3h4l_A 163 FSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKG--KKNLILSTMRNSSMRKNISSVFGAGGM-RGLEEVDLVLDLN 239 (367)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCSSCCHHHHHHHHHCTTTT-TTEEEEEEEEECG
T ss_pred hccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCC--cceEEEECCCCCCHHHHHHHHhCHHHH-hccEEEecccccc
Confidence 8545567788999999999999999999998743110 012344432 3577777766553311 11122221
Q ss_pred ------------------ecceeEEEEEEEEcC----CCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccC
Q 007002 230 ------------------DVDGITIDLALQWCS----DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKT 287 (622)
Q Consensus 230 ------------------~~~~i~veval~~s~----~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~ 287 (622)
+..++.++--+.-.. .+....|+-|||+.+-.. ..|.++|++..+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~---------~~l~~ai~~~y~~~~- 309 (367)
T 3h4l_A 240 PFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEY---------STLLKCCNEVYKTFN- 309 (367)
T ss_dssp GGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECC---------HHHHHHHHHHHHTTC-
T ss_pred cccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecC---------HHHHHHHHHHHHhcC-
Confidence 223455543222110 122356899999999765 356777766544421
Q ss_pred CCCCCCCCCHHhHhcccEEEEEEeecCCCCC
Q 007002 288 VKDKDISLSGEHVREGLTCIISVRVPNPEFE 318 (622)
Q Consensus 288 ~k~~~~~l~~~diregl~~~vs~~i~nP~Fe 318 (622)
+ ...=.+++++.++.-.+|
T Consensus 310 -~-----------~~~P~~~L~l~~~p~~vD 328 (367)
T 3h4l_A 310 -N-----------VQFPAVFLNLELPMSLID 328 (367)
T ss_dssp -S-----------SCBCCEEEEEECCGGGEE
T ss_pred -C-----------CCCcEEEEEEEcChHHcc
Confidence 1 123377888888754554
No 22
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.90 E-value=1.4e-25 Score=249.05 Aligned_cols=264 Identities=15% Similarity=0.152 Sum_probs=191.8
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcCC-CCeEEEEEeCCC------eEEEEECCCCccCcccCCCCcchhhhhheee
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAGY-ASNIEVALLADN------SVSVADNGRGIPIDLHPATNKSALETVLTVL 73 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g~-~~~I~V~l~~~g------~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l 73 (622)
||+.+.+...|++++.|+|+||+|+...|. ...|.|++..++ .|+|.|||+|||.+.. +.+|..+
T Consensus 22 l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l--------~~iF~~f 93 (530)
T 2zbk_B 22 LAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEV--------PNAFGRV 93 (530)
T ss_dssp GGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGS--------HHHHTSC
T ss_pred ceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHH--------HHHhccc
Confidence 455556668999999999999999976541 237999888644 7999999999998863 4689988
Q ss_pred ccCCCCCCCCCCeeeccccccccceeeeeecC-----eEEEEEEeCCE--EEEEEE--ec---CcccccceeeccCCCCC
Q 007002 74 HAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE-----SLEVTVWRDGM--EYHQKY--SR---GKPVTTLTCHVLPVDSK 141 (622)
Q Consensus 74 ~ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~-----~~~V~v~r~g~--~~~q~f--~~---G~~~~~~~~~~~~~~~~ 141 (622)
++++++.. ..+.|.+|+|+++++.+++ .+.|++..++. .+...+ .- +....+.... + ...
T Consensus 94 ~~tsk~~~-----~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~--~-~~~ 165 (530)
T 2zbk_B 94 LYSSKYVN-----RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSV--E-NTR 165 (530)
T ss_dssp CCSCCCCC-----SCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEE--E-CCS
T ss_pred cccCCccc-----ccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCcccccccc--C-CCC
Confidence 89988742 4567889999999999998 58888877652 344333 21 1111122111 0 123
Q ss_pred CCCCeEEEEEeCcccccccccCCH-HHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCCC
Q 007002 142 DRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 220 (622)
Q Consensus 142 ~~~GT~V~F~PD~~iF~~~~~~~~-~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~~ 220 (622)
..+||+|+++ |..+ ..+. ..+.++++++|+++|+++|.|.+.. .+.|.+++.. +.
T Consensus 166 ~~~GT~V~v~-----l~~~-~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~-------~~~~~~~~~~-----------~~ 221 (530)
T 2zbk_B 166 GFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPE-------GNVTYYPRLT-----------NK 221 (530)
T ss_dssp SCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCCEEEECTT-------SCEEEECCCC-----------CC
T ss_pred CCCCcEEEEE-----eccc-hhhHHHHHHHHHHHHHHHCCCcEEEEEECC-------CeEEEecCcc-----------cc
Confidence 5789999998 4322 2444 7899999999999999999999865 2467776621 11
Q ss_pred CCC-eeEEEeecceeEEEEEEE-EcCCCCCc-eeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCC-CCCCC
Q 007002 221 LHD-VVGFRKDVDGITIDLALQ-WCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLS 296 (622)
Q Consensus 221 l~~-~i~~~~~~~~i~veval~-~s~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~-~~~l~ 296 (622)
+++ +.....+..|+.++.+++ ++ .++.. ++.+|+|+++|..||+|+++|++++ ++.++. +.+++
T Consensus 222 lp~~~~~~~~~~~Gi~~~~~l~~~~-~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~-----------gl~~~~~~~~l~ 289 (530)
T 2zbk_B 222 IPKPPQEVKPHPYGVDREEIKILIN-NLKRDYTIKEFLVNEFQSIGDTTADKILELA-----------GLKPNKKVKNLT 289 (530)
T ss_dssp CCCCCCCCCCCGGGCCHHHHHHHHT-TCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT-----------TCCSSCBSSCCC
T ss_pred ccCCcceeccCCCChhHHHHHHHHh-ccCCCceeHhhhcCccccccHHHHHHHHHhh-----------CCCCCCCcccCC
Confidence 221 122233456777777776 44 56666 7999999999999999999999864 554444 46899
Q ss_pred HHhHhcccEEEEEEe-ecCCC
Q 007002 297 GEHVREGLTCIISVR-VPNPE 316 (622)
Q Consensus 297 ~~diregl~~~vs~~-i~nP~ 316 (622)
++|++++|.++++++ +++|.
T Consensus 290 ~~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 290 EEEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp HHHHHHHHHHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHhccCCCCCC
Confidence 999999999999998 88776
No 23
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.90 E-value=4.9e-23 Score=217.05 Aligned_cols=263 Identities=13% Similarity=0.156 Sum_probs=174.2
Q ss_pred chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCCCe
Q 007002 9 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 86 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~ 86 (622)
..+.+++.|||+||+|+ .++.|.|.++.+| .|+|.|||+|||.+..+ .+| ..|+++|+.+.++.+
T Consensus 27 ~~~~~vv~eLv~NAidA----~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~--------~~~-~~~~tsK~~~~~dl~ 93 (348)
T 3na3_A 27 QRPANAIKEMIENCLDA----KSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLD--------IVC-ERFTTSKLQSFEDLA 93 (348)
T ss_dssp CSHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGGG--------TTT-STTCCSSCCCC----
T ss_pred cCHHHHHHHHHHHHHHc----CCCEEEEEEEeCCEEEEEEEECCcCcChHHhh--------hhh-ccccccccCcchhhh
Confidence 56789999999999998 4889999999766 49999999999998753 344 468999987543344
Q ss_pred -eeccccccccceeeeeecCeEEEEEEeCC--EEEEEEEecCcccccceeeccCCCCCCCCCeEEEE------EeCcccc
Q 007002 87 -SVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF------WPDKQVF 157 (622)
Q Consensus 87 -k~sgG~~GvG~s~vNalS~~~~V~v~r~g--~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F------~PD~~iF 157 (622)
..|+|+||+|++++|++| +++|+++++| ..|.++|.+|.+..++.+. ..++||+|+| +|++.+|
T Consensus 94 ~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~------~~~~GTtV~v~~LF~n~P~R~k~ 166 (348)
T 3na3_A 94 SISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC------AGNQGTQITVEDLFYNIATRRKA 166 (348)
T ss_dssp -----CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE------CCCSEEEEEEESTTTTCHHHHHT
T ss_pred ccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe------cCCCCcEEEECcccccCchhhhh
Confidence 689999999999999999 8999999887 4899999999876544322 3578999999 5999888
Q ss_pred cccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeC--CcHHHHHHHHhcCCCCCCCeeEEEeecc--e
Q 007002 158 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEEYVQWLNTDKKPLHDVVGFRKDVD--G 233 (622)
Q Consensus 158 ~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~--~Gl~~yv~~l~~~~~~l~~~i~~~~~~~--~ 233 (622)
-.+...+++.|.++++++|+++|+++|.|.+.... ...+... +.+.+-+..+.+..- ...-+.+..+.+ +
T Consensus 167 lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~-----~~~~~~~~~~~~~~~i~~i~G~~~-~~~l~~v~~~~~~~~ 240 (348)
T 3na3_A 167 LKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGET-----VADVRTLPNASTVDNIRSIFGNAV-SRELIEIGCEDKTLA 240 (348)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCS-----SCSEECCTTCCHHHHHHHHHCHHH-HTTEEEEEEEEGGGT
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEE-----EEEeecCCCCCHHHHHHHHhChHh-HhhcEEEEeecCCcc
Confidence 54455678899999999999999999999986521 1123322 346666665544211 111222332222 3
Q ss_pred eEEEEEEEEcCC-CCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEee
Q 007002 234 ITIDLALQWCSD-AYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 312 (622)
Q Consensus 234 i~veval~~s~~-~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs~~i 312 (622)
+.++--+.-..- .-+..++-|||+.+-..- .|.++|++..+.. +.+ ...=.+++++.+
T Consensus 241 ~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~---------~l~~ai~~~y~~~--l~~----------~~~P~~~L~l~~ 299 (348)
T 3na3_A 241 FKMNGYISNANYSVKKCIFLLFINHRLVEST---------SLRKAIETVYAAY--LPK----------NTHPFLYLSLEI 299 (348)
T ss_dssp EEEEEEEECSSCCBSSCEEEEEETTEECCCT---------THHHHHHHHHHTT--SCT----------TCBCEEEEEEEC
T ss_pred EEEEEEEeCCccCCCcccEEEEECCeEecCH---------HHHHHHHHHHHHh--CcC----------CCceEEEEEEEe
Confidence 555532221111 112458999999997653 3555555443331 111 123377888888
Q ss_pred cCCCCC
Q 007002 313 PNPEFE 318 (622)
Q Consensus 313 ~nP~Fe 318 (622)
+.-..|
T Consensus 300 ~p~~vD 305 (348)
T 3na3_A 300 SPQNVD 305 (348)
T ss_dssp C-----
T ss_pred Chhhee
Confidence 755544
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.89 E-value=3.7e-23 Score=218.26 Aligned_cols=225 Identities=20% Similarity=0.267 Sum_probs=168.1
Q ss_pred chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCCCe
Q 007002 9 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 86 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~ 86 (622)
..+.++++|+|+||+|+ | ++.|.|.++.+| .|+|.|||+|||.+. ++.+|+. |++||+.+.++.+
T Consensus 23 ~~~~~~v~ELi~NaidA---~-a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~--------l~~~~~~-~~tsK~~~~~d~~ 89 (333)
T 1b63_A 23 ERPASVVKELVENSLDA---G-ATRIDIDIERGGAKLIRIRDNGCGIKKDE--------LALALAR-HATSKIASLDDLE 89 (333)
T ss_dssp SSHHHHHHHHHHHHHHT---T-CSEEEEEEEGGGTSEEEEEECSCCCCGGG--------HHHHHST-TCCSSCCSHHHHH
T ss_pred hCHHHHHHHHHHHHHHC---C-CCeEEEEEEeCCceEEEEEEcCCCcCHHH--------HHHhhhc-ccccCccccchhh
Confidence 57899999999999997 3 789999999765 799999999999886 3456764 6788886411123
Q ss_pred -eeccccccccceeeeeecCeEEEEEEeCCE--EEEEEEecCcc-cccceeeccCCCCCCCCCeEEEEE------eCccc
Q 007002 87 -SVSGGLHGVGLSVVNALSESLEVTVWRDGM--EYHQKYSRGKP-VTTLTCHVLPVDSKDRQGTRIRFW------PDKQV 156 (622)
Q Consensus 87 -k~sgG~~GvG~s~vNalS~~~~V~v~r~g~--~~~q~f~~G~~-~~~~~~~~~~~~~~~~~GT~V~F~------PD~~i 156 (622)
..+.|++|+|+++++++| +++|+|++.|. .|.+ +.+|.. ..... +...++||+|+|+ |++.+
T Consensus 90 ~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~-~~~g~~~~~~~~------~~~~~~GT~V~v~~Lf~n~P~r~k 161 (333)
T 1b63_A 90 AIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQA-YAEGRDMNVTVK------PAAHPVGTTLEVLDLFYNTPARRK 161 (333)
T ss_dssp TCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEE-EEETTTTEEEEE------EECCCSEEEEEEESTTTTCHHHHH
T ss_pred hccccCccccchhhhhcCC-cEEEEEecCCCceEEEE-EEcCCcceEeee------cccCCCCCEEEEecccccchhhhh
Confidence 357899999999999999 79999998763 4554 666654 22221 1235689999998 99988
Q ss_pred ccccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCC-----cHHHHHHHHhcCCCCCCCeeEEEeec
Q 007002 157 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG-----GLEEYVQWLNTDKKPLHDVVGFRKDV 231 (622)
Q Consensus 157 F~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~-----Gl~~yv~~l~~~~~~l~~~i~~~~~~ 231 (622)
|..+...+++.|.++++++|+++|+++|+|.+.. ...+.+++ ++.+++..+.+.. ...+.+.+..+.
T Consensus 162 flk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-------~~~~~~~~~~~~~~~~~~i~~i~G~~-~~~~li~i~~~~ 233 (333)
T 1b63_A 162 FLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG-------KIVRQYRAVPEGGQKERRLGAICGTA-FLEQALAIEWQH 233 (333)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-------EEEEEECCCCTTCCTHHHHHHHHCHH-HHHHEEEEEEEE
T ss_pred hhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC-------EEEEecCCCCCCchHHHHHHHHhChh-hHhheEEEEecC
Confidence 8544456678999999999999999999998753 34555554 6888888776421 111345566566
Q ss_pred ceeEEEEEEEEcC--CCC-CceeeeeeCceeccC
Q 007002 232 DGITIDLALQWCS--DAY-SDTMLGYANSIRTID 262 (622)
Q Consensus 232 ~~i~veval~~s~--~~~-~~~~~SFVN~I~T~~ 262 (622)
.++.++..+++.. .++ ...++.|||+++...
T Consensus 234 ~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~ 267 (333)
T 1b63_A 234 GDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD 267 (333)
T ss_dssp TTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC
T ss_pred CCEEEEEEEEcCccccCCCCCcEEEEECCEEecC
Confidence 7788887777763 133 567999999999876
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.85 E-value=7.1e-21 Score=202.81 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=171.0
Q ss_pred chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCCCe
Q 007002 9 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 86 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~ 86 (622)
..+.++++|+|+||+|+ .++.|.|.+..+| .|+|.|||+|||.+..+ .+|.. |+++|+.+.++.+
T Consensus 33 ~~~~~vl~eLv~NAiDA----~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~--------~~f~~-~~tsK~~~~~dl~ 99 (365)
T 1h7s_A 33 LSLSTAVKELVENSLDA----GATNIDLKLKDYGVDLIEVSDNGCGVEEENFE--------GLTLK-HHTSKIQEFADLT 99 (365)
T ss_dssp CCHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGSG--------GGGC-----------CCTT
T ss_pred hhHHHHHHHHHHHHHHC----CCCEEEEEEEeCCcEEEEEEECCCCcCHHHHH--------HHhhh-ccccccccccchh
Confidence 56899999999999997 3789999998655 79999999999998753 35654 6777876432355
Q ss_pred e-eccccccccceeeeeecCeEEEEEEeCCE--EEEEEEe-cCcccccceeeccCCCCCCCCCeEEEEE----eCccc--
Q 007002 87 S-VSGGLHGVGLSVVNALSESLEVTVWRDGM--EYHQKYS-RGKPVTTLTCHVLPVDSKDRQGTRIRFW----PDKQV-- 156 (622)
Q Consensus 87 k-~sgG~~GvG~s~vNalS~~~~V~v~r~g~--~~~q~f~-~G~~~~~~~~~~~~~~~~~~~GT~V~F~----PD~~i-- 156 (622)
. .+.|+||+|+++++++| +++|+|++++. .|.++|. +|...... +...++||+|+|+ +.|.+
T Consensus 100 ~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~-------~~~~~~GT~V~v~~LF~n~P~R~k 171 (365)
T 1h7s_A 100 QVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT-------PYPRPRGTTVSVQQLFSTLPVRHK 171 (365)
T ss_dssp CSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE-------ECCCCSEEEEEEESTTTTSHHHHH
T ss_pred cccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec-------ccCCCCCcEEEEeecccccchhhh
Confidence 4 68999999999999999 99999998775 7999997 56654221 2245689999997 22221
Q ss_pred -ccccccCCHHHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCC--cHHHHHHHHhcCCCCCCCeeEEEe----
Q 007002 157 -FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLEEYVQWLNTDKKPLHDVVGFRK---- 229 (622)
Q Consensus 157 -F~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~--Gl~~yv~~l~~~~~~l~~~i~~~~---- 229 (622)
|..+...+++.|.++++++|+++|+++|.|.+..... .....|..++ ++.+.+..+.+... ...-+.+..
T Consensus 172 ~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~G~~~-~~~l~~i~~~~~~ 248 (365)
T 1h7s_A 172 EFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQG--KRQPVVCTGGSPSIKENIGSVFGQKQ-LQSLIPFVQLPPS 248 (365)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCCCSSHHHHHHHHHCHHH-HHTEEECCCCCCC
T ss_pred hhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCC--cEEEEEEcCCCchHHHHHHHhcChHh-HhceEEEeccCCc
Confidence 4223345678899999999999999999999876321 1245666664 68888887655310 001111111
Q ss_pred --------------ecceeEEEEEEEEcC----CCCCceeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCC
Q 007002 230 --------------DVDGITIDLALQWCS----DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK 291 (622)
Q Consensus 230 --------------~~~~i~veval~~s~----~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~ 291 (622)
+..++.+.--+.-.. .+....|+-|||+.+-.. ..|.++|++..+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~---------~~l~~ai~~~y~~~~~---- 315 (365)
T 1h7s_A 249 DSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDP---------AKVCRLVNEVYHMYNR---- 315 (365)
T ss_dssp HHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECC---------HHHHHHHHHHHHTTCT----
T ss_pred ccccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecC---------HHHHHHHHHHHHhhCc----
Confidence 113455553332221 112356899999999764 3466666665443211
Q ss_pred CCCCCHHhHhcccEEEEEEeecCCCCC
Q 007002 292 DISLSGEHVREGLTCIISVRVPNPEFE 318 (622)
Q Consensus 292 ~~~l~~~diregl~~~vs~~i~nP~Fe 318 (622)
...=.+++++.++.-.+|
T Consensus 316 ---------~~~P~~~L~l~~~p~~vD 333 (365)
T 1h7s_A 316 ---------HQYPFVVLNISVDSECVD 333 (365)
T ss_dssp ---------TCBCCEEEEEECCGGGEE
T ss_pred ---------cCCcEEEEEEEeChHHcc
Confidence 034477888888744444
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.66 E-value=1.4e-17 Score=182.87 Aligned_cols=263 Identities=15% Similarity=0.176 Sum_probs=165.5
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcC-CCCeEEEEEeCCC------eEEEEECCCCccCcccCCCCcchhhhhheee
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLADN------SVSVADNGRGIPIDLHPATNKSALETVLTVL 73 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g-~~~~I~V~l~~~g------~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l 73 (622)
||+.+++...|++++.|||+||+|+...| ....|.|++..++ .|+|+|||+|||.+. ++.+|..+
T Consensus 23 ~~~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~--------l~~iF~~f 94 (471)
T 1mu5_A 23 LAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQE--------VPNAFGRV 94 (471)
T ss_dssp GTTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGG--------HHHHHHCC
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHH--------HHHHhccc
Confidence 57777888999999999999999997654 2338999988643 699999999999886 45689988
Q ss_pred ccCCCCCCCCCCeeeccccccccceeeeeecCe-----EEEEEEeCCE--EEEEEEe------cCcccccceeeccCCCC
Q 007002 74 HAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDGM--EYHQKYS------RGKPVTTLTCHVLPVDS 140 (622)
Q Consensus 74 ~ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~~-----~~V~v~r~g~--~~~q~f~------~G~~~~~~~~~~~~~~~ 140 (622)
++++++.. ..+.|.+|+|+++++.+++. +.|++..++. .+...+. .|..... ... + ..
T Consensus 95 ~~tsk~~~-----~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~-~~~--~-~~ 165 (471)
T 1mu5_A 95 LYSSKYVN-----RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVER-GSV--E-NT 165 (471)
T ss_dssp CCC-CCCC-----SCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEE-EEE--E-CC
T ss_pred cccccccc-----ccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccc-ccc--c-CC
Confidence 88888742 23345599999999999987 8888877652 4444432 2222211 111 0 12
Q ss_pred CCCCCeEEEEEeCcccccccccCCH-HHHHHHHHHHhccCCCcEEEEeecCCCCCCCceeEEEeCCcHHHHHHHHhcCCC
Q 007002 141 KDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 219 (622)
Q Consensus 141 ~~~~GT~V~F~PD~~iF~~~~~~~~-~~i~~rl~elA~lnpgl~I~l~d~r~~~~~~~~~~f~~~~Gl~~yv~~l~~~~~ 219 (622)
...+||+|++. |..+ ..+. +.|.++++++|+++|+++|.|.+... +.+.+.+. .+
T Consensus 166 ~~~~GT~V~v~-----l~~~-~~e~~~~I~~~l~~~al~~p~v~i~l~~~~~-------~~~~~~r~-----------~~ 221 (471)
T 1mu5_A 166 RGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPEG-------NVTYYPRL-----------TN 221 (471)
T ss_dssp TTCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCEEEEECTTC-------CEEEECCC-----------CC
T ss_pred CCCCCEEEEEE-----EcCC-cchHHHHHHHHHHHHHhHCCCeEEEEEECCc-------eEEEeccc-----------cc
Confidence 45789999998 4322 2334 78999999999999999999998642 34555542 11
Q ss_pred CCCC-eeEEEeecceeEEEEEEEEcCCCCCc-eeeeeeCceeccCCCcchHHHHHHHHHHHHHHHhhccCCCCC-CCCCC
Q 007002 220 PLHD-VVGFRKDVDGITIDLALQWCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLS 296 (622)
Q Consensus 220 ~l~~-~i~~~~~~~~i~veval~~s~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~al~~~in~~~kk~~~~k~~-~~~l~ 296 (622)
.+++ +.....+..|++++..+.....+-.. .+.+|+-.-++.-| .+...++++..++.+.. ...++
T Consensus 222 ~lp~~~~~~~p~~~G~~l~~~~~~~~~~~~~~~~~~fl~~~f~~v~-----------~~~a~~~~~~~~~~~~~~~~~~~ 290 (471)
T 1mu5_A 222 KIPKPPQEVKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIG-----------DTTADKILELAGLKPNKKVKNLT 290 (471)
T ss_dssp CCCCCCCCCCCCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCC-----------HHHHHHHHHHTTCCTTSBGGGCC
T ss_pred ccCCccceeecCCCchhHHHHHHHHHhcCCCcchHHhhhccccccC-----------HHHHHHHHHhcCCCCCCChhhcC
Confidence 1111 11112234444333222111111112 46777777677776 33444555555554432 23566
Q ss_pred HHhHhcccEEEEEEe-ecCC
Q 007002 297 GEHVREGLTCIISVR-VPNP 315 (622)
Q Consensus 297 ~~diregl~~~vs~~-i~nP 315 (622)
.+++..-+-++-..+ +..|
T Consensus 291 ~~~~~~l~~~~~~~~~~~~p 310 (471)
T 1mu5_A 291 EEEITRLVETFKKYEDFRSP 310 (471)
T ss_dssp TTHHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHHhccCccCC
Confidence 777766666655554 4444
No 27
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.07 E-value=3.4e-10 Score=112.61 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=102.6
Q ss_pred hHHHHHHHHhHHHhhhc-------C-------CCCeEEEEEeC-CCeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA-------G-------YASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~-------g-------~~~~I~V~l~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||+|+... + ..-.|.|..+. ...|+|.|||.||+.+... ..|+++.++
T Consensus 34 ~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~--------~~l~~ia~S 105 (228)
T 3t0h_A 34 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLI--------NNLGTIAKS 105 (228)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH--------TGGGSCHHH
T ss_pred HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHH--------HHHHhhccc
Confidence 57899999999999742 1 12246666664 3589999999999988632 245443333
Q ss_pred CC--CCCC--CCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCeEEEEE
Q 007002 77 GK--FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 151 (622)
Q Consensus 77 ~k--f~~~--~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~ 151 (622)
++ |.+. +..-..+.|+.|+|+.++-++|++++|.++..+ ..|..++..|... ..... + +...++||+|+..
T Consensus 106 ~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~-~v~~~--~-~~~~~~GT~I~v~ 181 (228)
T 3t0h_A 106 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILH 181 (228)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEE
T ss_pred cchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceE-EEeec--C-CCCCCCCcEEEEE
Confidence 22 2110 001256889999999999999999999998755 5677777665432 11111 1 2345789999997
Q ss_pred eCcccccccccCCHHHHHHHHHHHh--ccCCCcEEEEeecC
Q 007002 152 PDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRKED 190 (622)
Q Consensus 152 PD~~iF~~~~~~~~~~i~~rl~elA--~lnpgl~I~l~d~r 190 (622)
.-... ..-.+...|.+.++.+| ..+| |+++.++
T Consensus 182 Lk~~~---~E~~e~~~i~~iv~~~a~~l~~P---i~~~~~~ 216 (228)
T 3t0h_A 182 LKEDQ---TEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 216 (228)
T ss_dssp ECGGG---GGGGSHHHHHHHHHHHSTTCSSC---EEECCC-
T ss_pred ECCch---hhhhhHHHHHHHHHHHHhhCCCC---eEEeecc
Confidence 22111 01134578899999999 4555 5555443
No 28
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.03 E-value=4.7e-10 Score=112.89 Aligned_cols=161 Identities=18% Similarity=0.234 Sum_probs=103.3
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeC-CCeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||.|+... +..-.|.|..+. ...|+|.|||.||+.+... ..|+++.++
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~--------~~l~~ia~S 133 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLI--------NNLGTIAKS 133 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH--------THHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHH--------HHHHhhccc
Confidence 56899999999999732 112356666664 4589999999999988632 234433232
Q ss_pred CC--CCCC--CCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCeEEEEE
Q 007002 77 GK--FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 151 (622)
Q Consensus 77 ~k--f~~~--~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~ 151 (622)
++ |.+. ...-..+.|+.|+|+.++-++|+.++|.++.++ ..|..+...|... ..... + +....+||+|+..
T Consensus 134 ~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~-~v~~~--~-~~~~~~GT~I~l~ 209 (256)
T 3o0i_A 134 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILH 209 (256)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEE
T ss_pred cccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceE-EEeeC--C-CCCCCCCcEEEEE
Confidence 22 2110 001256889999999999999999999998754 5677776665432 11111 1 2345789999998
Q ss_pred eCcccccccccCCHHHHHHHHHHHh--ccCCCcEEEEeecC
Q 007002 152 PDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRKED 190 (622)
Q Consensus 152 PD~~iF~~~~~~~~~~i~~rl~elA--~lnpgl~I~l~d~r 190 (622)
-++....-.+...|.+.++.+| ..+| |++..++
T Consensus 210 ---LK~~~~e~~e~~~I~~iv~k~s~~l~~P---I~~~~~~ 244 (256)
T 3o0i_A 210 ---LKEDQTEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 244 (256)
T ss_dssp ---ECGGGGGGGCHHHHHHHHHHHCTTCSSC---EEECCC-
T ss_pred ---EcCcchhhccHHHHHHHHHHHHhhCCCC---eEEeeee
Confidence 2232222245678999999999 4555 5555443
No 29
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.02 E-value=7.5e-10 Score=110.86 Aligned_cols=146 Identities=21% Similarity=0.273 Sum_probs=95.9
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~~-g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
..+++|+|.||+|+... .....|.|.++.+ ..|+|.|||.||+.+.. +.+|+++.++
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~edl--------~~~~~~ia~S 120 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEV--------IDHLGTIAKS 120 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHHH--------HHHHTTCCCT
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHHH--------HHHHHHHccc
Confidence 57899999999999731 1224577777754 47999999999998763 3355554444
Q ss_pred CC--CCCC-C---CCeeeccccccccceeeeeecCeEEEEEEeCCE----EEEEEEecCcccccceeeccCCCCCCCCCe
Q 007002 77 GK--FGGS-S---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM----EYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 146 (622)
Q Consensus 77 ~k--f~~~-~---~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~----~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT 146 (622)
++ |.+. . ..-...-|+.|+|+..+-++++.++|.++..+. .|..++..+... ..... ....+||
T Consensus 121 ~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~i~~~-----~~~~~GT 194 (235)
T 2ior_A 121 GTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRGT 194 (235)
T ss_dssp THHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE-EEEEE-----CCCSCEE
T ss_pred cccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE-EEeeC-----CCCCCCE
Confidence 32 3110 0 011345699999998888888899999987653 566666544321 11111 2446899
Q ss_pred EEEEE--eCcccccccccCCHHHHHHHHHHHh
Q 007002 147 RIRFW--PDKQVFTTAIQFDHNTIAGRIRELA 176 (622)
Q Consensus 147 ~V~F~--PD~~iF~~~~~~~~~~i~~rl~elA 176 (622)
+|++. |+...| ++...|.+.++.+|
T Consensus 195 ~V~v~Lk~~~~~~-----~e~~~i~~lv~~ya 221 (235)
T 2ior_A 195 EITLHLREGEDEF-----LDDWRVRSIISKYS 221 (235)
T ss_dssp EEEEEECTTCGGG-----GCHHHHHHHHHHHT
T ss_pred EEEEEEcCchhhh-----CCHHHHHHHHHHHh
Confidence 99986 222222 46788999999999
No 30
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=98.97 E-value=1.1e-08 Score=114.00 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=100.6
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~~-g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||+|+... .....|.|.++.+ +.|+|.|||.||+.+.. ...|+++.++
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl--------~~~l~tiA~S 100 (559)
T 1y4s_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEV--------IDHLGTIAKS 100 (559)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHHH--------HHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHHH--------HHHHhhhccc
Confidence 46799999999999721 1235788888864 48999999999998863 2345554444
Q ss_pred CC--C----CCCCCCeeeccccccccceeeeeecCeEEEEEEeCC----EEEEEEEecCcccccceeeccCCCCCCCCCe
Q 007002 77 GK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 146 (622)
Q Consensus 77 ~k--f----~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g----~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT 146 (622)
++ | .+....-..+-|+.|+|..++-++++.++|.|+..+ ..|..+...|... ..... ....+||
T Consensus 101 g~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~-----~~~~~GT 174 (559)
T 1y4s_A 101 GTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRGT 174 (559)
T ss_dssp CCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEE-EEEEE-----CCCSCEE
T ss_pred ccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCee-EEeEC-----CCCCCCe
Confidence 32 3 110001245679999999999999999999998765 2455555443321 22111 1346899
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHh--ccCCCcEE
Q 007002 147 RIRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 184 (622)
Q Consensus 147 ~V~F~PD~~iF~~~~~~~~~~i~~rl~elA--~lnpgl~I 184 (622)
+|+....... ..-++...|.+.++.+| ..+| +.+
T Consensus 175 ~I~L~Lk~d~---~Efle~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 175 EITLHLREGE---DEFLDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp EEEEEECTTC---GGGSCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred EEEEEEcchh---hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 9998732211 11135678999999999 6678 655
No 31
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.94 E-value=4.1e-09 Score=104.49 Aligned_cols=162 Identities=18% Similarity=0.231 Sum_probs=101.3
Q ss_pred hHHHHHHHHhHHHhhhc------------CCCC--eEEEEEeC-CCeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA------------GYAS--NIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~------------g~~~--~I~V~l~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
..+++|+|.||+|+... +..+ .|.|.++. ...|+|.|||.||+.+.. ...|+++.++
T Consensus 28 ~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl--------~~~l~~ia~S 99 (220)
T 2wer_A 28 EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAEL--------INNLGTIAKS 99 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHH--------HHHTTTSCCT
T ss_pred hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHH--------HHHHHhHhcc
Confidence 57899999999999752 1123 45666654 347999999999998753 2245443333
Q ss_pred CC--C----CCCCCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCeEEE
Q 007002 77 GK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 149 (622)
Q Consensus 77 ~k--f----~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 149 (622)
++ | ... .-...-|..|+|...+-++++.++|.++..+ ..|..++..+... ..... +......+||+|+
T Consensus 100 ~~~~f~~k~~~~--~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~GT~I~ 174 (220)
T 2wer_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILR 174 (220)
T ss_dssp THHHHHHHHTTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEE-EEEEC--SSSCCCSSEEEEE
T ss_pred cchhHHHHhhcc--CCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCce-Eeecc--cCCCCCCCCeEEE
Confidence 31 1 111 1145678999999999889999999998654 3456565544321 11111 0022456899999
Q ss_pred EEeCcccccccccCCHHHHHHHHHHHhccCCCcEEEEeecC
Q 007002 150 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 190 (622)
Q Consensus 150 F~PD~~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r 190 (622)
....... ..-++...|.+.++.+|-.- ...|+++.++
T Consensus 175 l~Lk~~~---~~~~e~~~i~~~v~~~a~~l-~~PI~~~~~~ 211 (220)
T 2wer_A 175 LFLKDDQ---LEYLEEKRIKEVIKRHSEFV-AYPIQLVVTK 211 (220)
T ss_dssp EEECTTC---GGGGCHHHHHHHHHHHCTTC-CSCEEECCCC
T ss_pred EEECcch---HHhCCHHHHHHHHHHHHhcC-CCceEEEecc
Confidence 8722111 01146678888888888443 3467777765
No 32
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=98.88 E-value=6.5e-09 Score=104.06 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=99.8
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~~-g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||+|+... +....|.|.++.+ ..|+|.|||.||+.+.. ...|+++-++
T Consensus 34 ~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~edl--------~~~l~~ia~S 105 (236)
T 2gqp_A 34 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL--------VKNLGTIAKS 105 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHCC---
T ss_pred hHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHHH--------HHHHhhhccc
Confidence 57899999999999641 1224677777754 47999999999998863 2245444333
Q ss_pred CC--C----CCCC---CCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCe
Q 007002 77 GK--F----GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 146 (622)
Q Consensus 77 ~k--f----~~~~---~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT 146 (622)
++ | .... +.-...-|..|+|..++-++|..++|.++..+ ..|..+...|.. ..... +......+||
T Consensus 106 g~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~~--~i~~~--~~~~~~~~GT 181 (236)
T 2gqp_A 106 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGT 181 (236)
T ss_dssp ------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSCE--EEEEC--TTCSCSSSEE
T ss_pred ccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCEE--EEEec--cCCCCCCCCe
Confidence 32 2 1100 01134568999999999999999999998754 344444433222 22111 1012346899
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHhccCCCcEEEEeecCC
Q 007002 147 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 191 (622)
Q Consensus 147 ~V~F~PD~~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~ 191 (622)
+|+....... ..-++...|.+.++.+|-..| ..|.+++++.
T Consensus 182 ~I~l~Lk~~~---~~~le~~~i~~lv~~~s~~i~-~pI~~~~~~~ 222 (236)
T 2gqp_A 182 TITLVLKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSKT 222 (236)
T ss_dssp EEEEEECGGG---GGGGCHHHHHHHHHHHHTTCS-SCEEEEEECC
T ss_pred EEEEEECCcc---hhhChHHHHHHHHHHHhhhCC-CceEEeeeec
Confidence 9998732211 111367888888888885433 6688877653
No 33
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.85 E-value=1e-08 Score=104.18 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=101.9
Q ss_pred hHHHHHHHHhHHHhhhc------------CCCCeEEEEE--eC-CCeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA------------GYASNIEVAL--LA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~------------g~~~~I~V~l--~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||+|+... +..+.|.|.| +. ...|+|.|||.||+.+.. ...|+++.++
T Consensus 70 ~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL--------~~~l~~ia~S 141 (264)
T 1yc1_A 70 EIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADL--------INNLGTIAKS 141 (264)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHH--------HHHHHhhccc
Confidence 46899999999999741 1125555555 43 347999999999998763 2345443333
Q ss_pred CC--C----CCCCCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCeEEE
Q 007002 77 GK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 149 (622)
Q Consensus 77 ~k--f----~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 149 (622)
++ | ... .-...-|..|+|...+-+++..++|.++..+ ..|..+...+... ..... + .....+||+|+
T Consensus 142 ~~~~f~~~l~~~--~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~-~i~~~--~-~~~~~~GT~I~ 215 (264)
T 1yc1_A 142 GTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVI 215 (264)
T ss_dssp CHHHHHHHHHTT--CCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EEEEC--C-SSCCSSEEEEE
T ss_pred cchhhhhhhccc--cchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceE-EEeec--C-CCCCCCCeEEE
Confidence 32 1 001 1134678999999999999999999998754 3455555543321 11111 1 22456899999
Q ss_pred EEeCcccccccccCCHHHHHHHHHHHhccCCCcEEEEeecC
Q 007002 150 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 190 (622)
Q Consensus 150 F~PD~~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r 190 (622)
....... ..-++...|.+.++.+|-.-| ..|++++++
T Consensus 216 l~Lk~~~---~e~~e~~~i~~lv~k~s~fi~-~PI~~~~~~ 252 (264)
T 1yc1_A 216 LHLKEDQ---TEYLEERRIKEIVKKHSQFIG-YPITLFVEK 252 (264)
T ss_dssp EEECGGG---GGGGSHHHHHHHHHHHTTTCS-SCEEECCCC
T ss_pred EEECCch---hhhhhHHHHHHHHHHHHhhCC-CCEEEeecc
Confidence 9732111 011467888999999885443 568887765
No 34
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=98.84 E-value=1.9e-08 Score=113.25 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=98.7
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~~-g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||+|+... .....|.|.++.+ +.|+|.|||.||+.+.. ...|+++.++
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl--------~~~l~tiA~S 100 (624)
T 2ioq_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEV--------IDHLGTIAKS 100 (624)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHHH--------HHHHHhhccc
Confidence 46799999999999721 1224688888864 47999999999998863 2245543333
Q ss_pred CC--C----CCCCCCeeeccccccccceeeeeecCeEEEEEEeCC----EEEEEEEecCcccccceeeccCCCCCCCCCe
Q 007002 77 GK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 146 (622)
Q Consensus 77 ~k--f----~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g----~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT 146 (622)
++ | .+....-..+-|+.|+|..++-++|+.++|.|+..+ ..|..+...|... ..... ....+||
T Consensus 101 g~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~-----~~~~~GT 174 (624)
T 2ioq_A 101 GTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRGT 174 (624)
T ss_dssp --------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCC-EEEEE-----CCSSSEE
T ss_pred ccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeE-EEEEC-----CCCCCCe
Confidence 32 3 110001245679999999999999999999998765 2455555443221 22111 1346899
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHh--ccCCCcEE
Q 007002 147 RIRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 184 (622)
Q Consensus 147 ~V~F~PD~~iF~~~~~~~~~~i~~rl~elA--~lnpgl~I 184 (622)
+|+....... ..-++...|.+.++.+| ..+| +.+
T Consensus 175 ~I~L~Lk~d~---~Efl~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 175 EITLHLREGE---DEFLDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp EEEEEECTTC---GGGGCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred EEEEEEcchh---hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 9998722110 11135678889999999 5678 655
No 35
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.69 E-value=8.1e-08 Score=97.64 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=101.0
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeC-CCeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||.|+... +..-.|.|.++. ...|+|.|||.||+.+... -.|+++-.+
T Consensus 48 ~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~--------~~LgtIa~S 119 (281)
T 3peh_A 48 EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLI--------NNLGTIAKS 119 (281)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH--------HHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHH--------HHHHHHHhH
Confidence 45789999999999731 123467777775 4589999999999987632 234433333
Q ss_pred CC--C-------CCCCCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCe
Q 007002 77 GK--F-------GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 146 (622)
Q Consensus 77 ~k--f-------~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT 146 (622)
|+ | ..+ ...-|+.|+|..++=++|+.++|.++..+ ..|..+...|... .+... +.+....+||
T Consensus 120 gtk~f~e~l~~~~~d----~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~f-ti~~~--~~~~~~~~GT 192 (281)
T 3peh_A 120 GTSNFLEAISKSGGD----MSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKF-TIYKD--PRGATLKRGT 192 (281)
T ss_dssp CHHHHHHHHHHTTCC----STTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCE-EEEEC--TTCSTTSSEE
T ss_pred hhhhHHHhhhccccc----cccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccE-EEEEc--CCCCCCCCCe
Confidence 21 1 111 34569999999999999999999998755 4555555544321 11111 1123457899
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHhccCCCcEEEEeecC
Q 007002 147 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 190 (622)
Q Consensus 147 ~V~F~PD~~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r 190 (622)
+|+......-- .-++...|++.++..+-.- +..|+|..++
T Consensus 193 ~I~L~Lked~~---e~le~~~ik~ivkkys~fi-~~pI~l~~~k 232 (281)
T 3peh_A 193 RISLHLKEDAT---NLLNDKKLMDLISKYSQFI-QFPIYLLHEN 232 (281)
T ss_dssp EEEEEECGGGG---GGGSHHHHHHHHHHHTTTC-CSCEEEEEEE
T ss_pred EEEEEECCchh---hhcCHHHHHHHHHHhhccC-CcceEEeeee
Confidence 99987433211 1246677888888777433 2556666554
No 36
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.65 E-value=3.7e-08 Score=100.21 Aligned_cols=163 Identities=16% Similarity=0.198 Sum_probs=97.2
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeC-CCeEEEEECCCCccCcccCCCCcchhhhhheeec-c
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLH-A 75 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~-a 75 (622)
...++|||.||+|+... +..-.|.|.++. ...|+|.|||.||+.+.. .-.|+++. +
T Consensus 30 eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl--------~~~l~tia~S 101 (269)
T 1qy5_A 30 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL--------VKNLGTIAKS 101 (269)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHSCCSH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHH--------HHHhhhhccc
Confidence 35899999999999741 122457777764 358999999999998753 22344332 2
Q ss_pred CCC-CCC----C---CCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCe
Q 007002 76 GGK-FGG----S---SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 146 (622)
Q Consensus 76 g~k-f~~----~---~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT 146 (622)
|++ |-. . .+.-...-|+.|+|..++-++|..++|.++..+ ..|..+...|.. .+... +.+....+||
T Consensus 102 gtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~--~i~~~--~~~~~~~~GT 177 (269)
T 1qy5_A 102 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGT 177 (269)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCE--EEEEC--TTCSCSSSEE
T ss_pred ccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEE--EEEec--cCCCcCCCCe
Confidence 222 200 0 000123458999999999999999999998754 344444333322 11111 1012346899
Q ss_pred EEEEEeCcccccccccCCHHHHHHHHHHHhccCCCcEEEEeecC
Q 007002 147 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 190 (622)
Q Consensus 147 ~V~F~PD~~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r 190 (622)
+|+....... ..-++...|++.++.++-.- ...|+|+.++
T Consensus 178 ~I~L~Lk~d~---~e~le~~~i~~lvkkys~fi-~~PI~l~~~k 217 (269)
T 1qy5_A 178 TITLVLKEEA---SDYLELDTIKNLVKKYSQFI-NFPIYVWSSK 217 (269)
T ss_dssp EEEEEECGGG---GGGGSHHHHHHHHHTTCTTC-SSCEEEEEEC
T ss_pred EEEEEEcccc---hhhhhHHHHHHHHHhhhccc-ceeeEEeeee
Confidence 9998732211 11135667777777776433 2567777655
No 37
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.62 E-value=8e-08 Score=95.72 Aligned_cols=160 Identities=18% Similarity=0.251 Sum_probs=99.9
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeC-CCeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||.|+... +..-.|.|..+. ...++|+|||.||+.+.... .++++-.+
T Consensus 41 ~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~--------~LgtIA~S 112 (239)
T 3nmq_A 41 EIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLIN--------NLGTIAKS 112 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHT--------HHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHH--------HHHHHhcc
Confidence 46789999999999732 112357777775 45899999999999886421 23322222
Q ss_pred C-C-C----CCCCCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCeEEE
Q 007002 77 G-K-F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 149 (622)
Q Consensus 77 ~-k-f----~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 149 (622)
+ + | ... .-...-|+.|+|..++=++|+.++|.+++++ ..|..+...+.. -.+... + +....+||+|+
T Consensus 113 gtk~f~e~~~~~--~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~-fti~~~--~-~~~~~~GT~I~ 186 (239)
T 3nmq_A 113 GTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGS-FTVRAD--H-GEPIGRGTKVI 186 (239)
T ss_dssp HHHHHHHHHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTE-EEEEEC--C-SSCCSSEEEEE
T ss_pred cchhhhhhhccc--CCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCc-EEEEec--C-CCcCCCCCEEE
Confidence 2 1 1 011 1145679999999999999999999998754 455544443321 112111 1 23447899999
Q ss_pred EEeCc--ccccccccCCHHHHHHHHHHHhccCCCcEEEEeecCC
Q 007002 150 FWPDK--QVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 191 (622)
Q Consensus 150 F~PD~--~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l~d~r~ 191 (622)
.+... .-| ++...|++.++..+-.- +..|++.-++.
T Consensus 187 L~lk~d~~e~-----l~~~~i~~lv~kys~fi-~~pI~~~~~~~ 224 (239)
T 3nmq_A 187 LHLKEDQTEY-----LEERRVKEVVKKHSQFI-GYPITLYLEKE 224 (239)
T ss_dssp EEECGGGGGG-----GSHHHHHHHHHHHCTTC-SSCEEECCCSC
T ss_pred EEECCChHHh-----cCHHHHHHHHHHHHhcc-CCceEEeeeee
Confidence 87332 222 45667777777776332 35677766653
No 38
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.57 E-value=1.9e-07 Score=105.62 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=88.8
Q ss_pred hHHHHHHHHhHHHhhh--c----------CCC--CeEEEEEeCC-CeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQ--A----------GYA--SNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~--~----------g~~--~~I~V~l~~~-g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||+|+.- + +.+ ..|.|.++.+ ..|+|.|||.||+.+.. ...|+++-++
T Consensus 47 eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~edl--------~~~l~tIA~S 118 (666)
T 2o1u_A 47 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL--------VKNLGTIAKS 118 (666)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHTTC----
T ss_pred hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHHH--------HHHHhhhccc
Confidence 3579999999999972 1 113 4688888764 47999999999998763 2234443333
Q ss_pred CC--C----CCCC---CCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCe
Q 007002 77 GK--F----GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 146 (622)
Q Consensus 77 ~k--f----~~~~---~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT 146 (622)
|+ | .+.. ..-...-|+.|+|..++-++++.++|.|++.+ ..|..+...|.. .+... +.+....+||
T Consensus 119 Gtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~--ti~~~--~~~~~~~~GT 194 (666)
T 2o1u_A 119 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGT 194 (666)
T ss_dssp ---------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCC--EEEEC--TTCCSSSSEE
T ss_pred ccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeE--EEEec--ccCCCCCCCe
Confidence 22 2 1100 01134569999999988888899999998754 334444333322 22111 1112346899
Q ss_pred EEEEEe--CcccccccccCCHHHHHHHHHHHh--ccCCCcEEEEee
Q 007002 147 RIRFWP--DKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRK 188 (622)
Q Consensus 147 ~V~F~P--D~~iF~~~~~~~~~~i~~rl~elA--~lnpgl~I~l~d 188 (622)
+|+... |..-| ++...|.+.++.+| .-+| |.|..
T Consensus 195 ~I~L~Lk~d~~Ef-----le~~~I~~ivkkys~fi~~P---I~~~~ 232 (666)
T 2o1u_A 195 TITLVLKEEASDY-----LELDTIKNLVKKYSQFINFP---IYVWS 232 (666)
T ss_dssp EEEEEECTTTTTS-----SSTTHHHHHHHHHSTTCCSC---EEEEE
T ss_pred EEEEEEccchhhh-----ccHHHHHHHHHHHHhhCCCc---eEEec
Confidence 999872 22222 34678888888888 5567 55543
No 39
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.49 E-value=5.9e-07 Score=101.68 Aligned_cols=156 Identities=18% Similarity=0.259 Sum_probs=98.3
Q ss_pred hHHHHHHHHhHHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCcccCCCCcchhhhhheeeccC
Q 007002 12 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 76 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~--------------g~~~~I~V~l~~~-g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag 76 (622)
...++|+|.||+|+.-. +....|.|.++.+ ..|+|+|||.||+.+.. ...|+++-++
T Consensus 28 eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl--------~~~l~tIA~S 99 (677)
T 2cg9_A 28 EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAEL--------INNLGTIAKS 99 (677)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHH--------HGGGSSSSSC
T ss_pred hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHHH--------HHHHHhHhcc
Confidence 35799999999999731 1234688888854 48999999999998863 2234443333
Q ss_pred CC------CCCCCCCeeeccccccccceeeeeecCeEEEEEEeCC-EEEEEEEecCcccccceeeccCCCCCCCCCeEEE
Q 007002 77 GK------FGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 149 (622)
Q Consensus 77 ~k------f~~~~~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g-~~~~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 149 (622)
|+ +... .-...-|+.|+|..++=+++..++|.|++.+ ..|..+...|... .+... +.+....+||+|+
T Consensus 100 gt~~f~~kl~~~--~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~-ti~~~--~~~~~~~~GT~I~ 174 (677)
T 2cg9_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILR 174 (677)
T ss_dssp TTHHHHSCCCSS--CCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEE-EEEEC--CSSCCCSSEEEEE
T ss_pred ccHHHHHhhhcc--cchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceE-EEeec--CCCCCCCCCeEEE
Confidence 22 2221 1134579999999888888889999998765 3455554444221 11111 1123456899999
Q ss_pred EEe--CcccccccccCCHHHHHHHHHHHhccCCCcEEEE
Q 007002 150 FWP--DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 186 (622)
Q Consensus 150 F~P--D~~iF~~~~~~~~~~i~~rl~elA~lnpgl~I~l 186 (622)
... |..-| ++...|.+.++.+|-.- +.-|++
T Consensus 175 L~Lk~d~~e~-----l~~~~i~~lvkkys~fi-~~PI~l 207 (677)
T 2cg9_A 175 LFLKDDQLEY-----LEEKRIKEVIKRHSEFV-AYPIQL 207 (677)
T ss_dssp EEECTTGGGG-----GCHHHHHHHHHHHSTTC-SSCEEE
T ss_pred EEEcchhhcc-----ccHHHHHHHHHHHHhhC-CCCeEE
Confidence 872 22222 45677888887777432 345665
No 40
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=98.22 E-value=2.8e-06 Score=84.83 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=78.1
Q ss_pred eEEEEEeC-CCeEEEEECCCCccCcccCCCCcchhhhhheeeccCC-C-CCCC---CCCeeeccccccccceeeeeecCe
Q 007002 33 NIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGG-K-FGGS---SSGYSVSGGLHGVGLSVVNALSES 106 (622)
Q Consensus 33 ~I~V~l~~-~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~-k-f~~~---~~~~k~sgG~~GvG~s~vNalS~~ 106 (622)
.|.|.++. ...|+|+|||.||+.+... -.|+++-.+| + |-.. ...-...-|+.|+|..++=++++.
T Consensus 120 ~I~I~~Dk~~~tLtI~DNGiGMTkeeL~--------~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdk 191 (272)
T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSELI--------NNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNR 191 (272)
T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHHH--------HHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCHHHHH--------HHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCE
Confidence 58888885 4589999999999988632 2333332222 1 2000 000123469999999999899999
Q ss_pred EEEEEEeCCEEEEEEEecCcccccceeecc---CCCCCCCCCeEEEEEeCc--ccccccccCCHHHHHHHHHHHh
Q 007002 107 LEVTVWRDGMEYHQKYSRGKPVTTLTCHVL---PVDSKDRQGTRIRFWPDK--QVFTTAIQFDHNTIAGRIRELA 176 (622)
Q Consensus 107 ~~V~v~r~g~~~~q~f~~G~~~~~~~~~~~---~~~~~~~~GT~V~F~PD~--~iF~~~~~~~~~~i~~rl~elA 176 (622)
++|.++.++..|..+...+..- .+...+. +.+....+||+|...... .-| ++...|++.++..+
T Consensus 192 V~V~Sk~dd~~~~WeS~g~gsf-ti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~-----le~~~ik~likkys 260 (272)
T 3ied_A 192 VEVYTKKEDQIYRWSSDLKGSF-SVNEIKKYDQEYDDIKGSGTKIILHLKEECDEY-----LEDYKLKELIKKYS 260 (272)
T ss_dssp EEEEEESSSCEEEEEECSSSEE-EEEECTTCTTCC--CCSSEEEEEEEECGGGGGG-----GSHHHHHHHHHHHC
T ss_pred EEEEEcCCCceEEEEECCCCCE-EEEECcccccccCCCCCCCcEEEEEECCChHHh-----cCHHHHHHHHHHHH
Confidence 9999986566666665543221 1211110 012245789999987333 222 34566777777665
No 41
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.92 E-value=1.7e-05 Score=71.99 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHhHHHhhhcCC-CCeEEEEEeC-CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCC
Q 007002 9 RGLHHLVYEILDNAVDEAQAGY-ASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 84 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g~-~~~I~V~l~~-~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~ 84 (622)
.-|..++.|+|+||+.++..+. ...|.|.+.. ++ .|+|+|||.||| . .+-+|....++..
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~-~---------~~~~~~~~~~~~~------ 101 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D---------IEEARQPLFTTKP------ 101 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C---------HHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC-h---------HHHhhcccccCCC------
Confidence 4578899999999999865421 4678888874 33 599999999999 3 2334543222111
Q ss_pred CeeeccccccccceeeeeecCeEEEEEEeC-CEEEEEEE
Q 007002 85 GYSVSGGLHGVGLSVVNALSESLEVTVWRD-GMEYHQKY 122 (622)
Q Consensus 85 ~~k~sgG~~GvG~s~vNalS~~~~V~v~r~-g~~~~q~f 122 (622)
..+-+|+|+.++..+.+.+.++...+ |..+++.+
T Consensus 102 ----~~~~~GlGL~iv~~~~~~i~~~~~~~~Gt~v~~~l 136 (145)
T 1th8_A 102 ----ELERSGMGFTIMENFMDEVIVESEVNKGTTVYLKK 136 (145)
T ss_dssp ------CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEEE
T ss_pred ----CCCCCcchHHHHHHHHheEEEEeCCCCCEEEEEEE
Confidence 12337999999999998555554332 33444443
No 42
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.68 E-value=6.6e-05 Score=68.15 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=54.2
Q ss_pred CCchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCC
Q 007002 7 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 83 (622)
Q Consensus 7 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~ 83 (622)
+..-|.+++.++|+||+.+.. ..|.|.+..++ .|+|.|||+|||.+..+ .+|....++.
T Consensus 41 d~~~l~~il~nLl~NAi~~~~----~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~--------~~f~~~~~~~------ 102 (152)
T 1id0_A 41 EQNDFVEVMGNVLDNACKYCL----EFVEISARQTDEHLYIVVEDDGPGIPLSKRE--------VIFDRGQRVD------ 102 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHCS----SEEEEEEEECSSCEEEEEEESSSCCCGGGTT--------GGGSCCCCTT------
T ss_pred CHHHHHHHHHHHHHHHHHhCc----CeEEEEEEecCCEEEEEEEeCCCCcCHHHHH--------HHhccceecc------
Confidence 345688999999999999842 27888887533 59999999999987532 3454322211
Q ss_pred CCeeeccccccccceeeeeecCeE
Q 007002 84 SGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 84 ~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
.+.+-+|+|++++..+.+.+
T Consensus 103 ----~~~~g~GlGL~i~~~~~~~~ 122 (152)
T 1id0_A 103 ----TLRPGQGVGLAVAREITEQY 122 (152)
T ss_dssp ----CCCTTCCSCHHHHHHHHHHT
T ss_pred ----CCCCCcccCHHHHHHHHHHc
Confidence 11234899999988776543
No 43
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.64 E-value=6.9e-05 Score=67.81 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=52.6
Q ss_pred CchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 84 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~ 84 (622)
..-|..++.++|+||+.++.. ...|.|.+..++ .++|+|||.|||.+..+ -+|....+ .
T Consensus 45 ~~~l~~il~nll~NAi~~~~~--~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~--------~~f~~~~~------~-- 106 (152)
T 3a0y_A 45 RTRIKQVLINLVQNAIEATGE--NGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFT------T-- 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--TCEEEEEEEECSSEEEEEEEEESCCCCGGGTT--------GGGSTTCC------C--
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHH--------hHhhhhcc------C--
Confidence 356889999999999988632 458888887543 59999999999987532 24432211 1
Q ss_pred CeeeccccccccceeeeeecC
Q 007002 85 GYSVSGGLHGVGLSVVNALSE 105 (622)
Q Consensus 85 ~~k~sgG~~GvG~s~vNalS~ 105 (622)
..+-+|+|++++..+.+
T Consensus 107 ----~~~g~GlGL~i~~~~~~ 123 (152)
T 3a0y_A 107 ----KTQGTGLGLSICRKIIE 123 (152)
T ss_dssp ----C--CCCCSHHHHHHHHH
T ss_pred ----CCCCCCcCHHHHHHHHH
Confidence 11237999999877664
No 44
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.55 E-value=8.7e-05 Score=68.30 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=54.9
Q ss_pred CchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 84 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~-~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~ 84 (622)
..-|..++.++|+||+.+. ...|.|.+.. ++ .|+|+|||.|||.+..+ -+|...+.+..
T Consensus 45 ~~~l~~il~nll~NAik~~----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~--------~~f~~f~~~~~------ 106 (161)
T 1bxd_A 45 PLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRK--------HLFQPFVRGDS------ 106 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGG--------CSSCCCCCCSC------
T ss_pred HHHHHHHHHHHHHHHHhhc----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHH--------HhCCCceeCCC------
Confidence 3457888889999998875 5678888874 33 59999999999987642 34544333221
Q ss_pred CeeeccccccccceeeeeecCeE
Q 007002 85 GYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 85 ~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
. .. .+-+|+|++++..+.+.+
T Consensus 107 ~-~~-~~g~GlGL~i~~~~~~~~ 127 (161)
T 1bxd_A 107 A-RT-ISGTGLGLAIVQRIVDNH 127 (161)
T ss_dssp C-CC-CCCCSCCCCTTHHHHHHH
T ss_pred C-CC-CCCcccCHHHHHHHHHHc
Confidence 0 11 134899999998887654
No 45
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.53 E-value=9.2e-05 Score=67.18 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=51.3
Q ss_pred CchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 84 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~-~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~ 84 (622)
..-|.+++.++|+||+.+... ..|.|.+.. ++ .|+|+|||.|||.+. .+-+|.....+..
T Consensus 44 ~~~l~~il~nLl~NA~~~~~~---~~I~i~~~~~~~~~~i~v~D~G~gi~~~~--------~~~if~~f~~~~~------ 106 (150)
T 1ysr_A 44 PAGLRLAVDNAIANAVKHGGA---TLVQLSAVSSRAGVEIAIDDNGSGVPEGE--------RQVVFERFSRGST------ 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---SEEEEEEEEETTEEEEEEEESSSCCCGGG--------HHHHHTSCC----------
T ss_pred HHHHHHHHHHHHHHHHhcCCC---cEEEEEEEecCCEEEEEEEECCCCCCHHH--------HHHHhcccccCCC------
Confidence 456888999999999998433 378888874 33 599999999999875 3345654332211
Q ss_pred CeeeccccccccceeeeeecCeE
Q 007002 85 GYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 85 ~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
. + .+-+|+|++++..+.+.+
T Consensus 107 ~-~--~~g~GlGL~i~~~~~~~~ 126 (150)
T 1ysr_A 107 A-S--HSGSGLGLALVAQQAQLH 126 (150)
T ss_dssp ----------CCCHHHHHHHHHT
T ss_pred C-C--CCCCCcCHHHHHHHHHHc
Confidence 0 1 223799999998887543
No 46
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.52 E-value=7.9e-05 Score=69.80 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=54.1
Q ss_pred CCchhhHHHHHHHHhHHHhhhcCCCCeEEEEE--eCC-C--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCC
Q 007002 7 GPRGLHHLVYEILDNAVDEAQAGYASNIEVAL--LAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGG 81 (622)
Q Consensus 7 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~l--~~~-g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~ 81 (622)
+..-|..++.++|+||+.++..+ ..|.|.+ ..+ + .|+|+|||.|||.+..+ -+|.....+..-
T Consensus 40 d~~~l~~il~nLl~NAi~~~~~~--~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~--------~lf~~~~~~~~~-- 107 (177)
T 3sl2_A 40 DQDKITQVLDNIISNALKYSPEG--GHVTFSIDVNEEEELLYISVKDEGIGIPKKDVE--------KVFDRFYRVDKA-- 107 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTT--CCEEEEEEEETTTTEEEEEEECCSSCCCTTTTT--------TTTSTTCCCC----
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEEccCCCEEEEEEEECCCCCCHHHHH--------HHHhhhccCCCC--
Confidence 34558899999999999986443 4455555 543 3 59999999999987532 245443322211
Q ss_pred CCCCeeeccccccccceeeeeecCeE
Q 007002 82 SSSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 82 ~~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
.....+-+|+|++++..+.+.+
T Consensus 108 ----~~~~~~g~GlGL~iv~~~~~~~ 129 (177)
T 3sl2_A 108 ----RTRKLGGTGLGLAIAKEMVQAH 129 (177)
T ss_dssp --------CCCCCCHHHHHHHHHHHT
T ss_pred ----CCCCCCCCCcCHHHHHHHHHHc
Confidence 1222335899999988777543
No 47
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.49 E-value=9e-05 Score=79.23 Aligned_cols=92 Identities=18% Similarity=0.398 Sum_probs=62.1
Q ss_pred CchhhHHHHHHHHhHHHhhhcCC-----CCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 79 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~-----~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf 79 (622)
+.-|.+++.++|+||+.+...|. ...|.|.+..++ .|+|+|+|.|||.+. .+-+|...+++.+-
T Consensus 228 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~--------~~~if~~f~~~~~~ 299 (394)
T 2e0a_A 228 PSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRI--------IDRLFSYTYSTAPT 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGG--------HHHHTSTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHH--------HHHHhCcCccCCCC
Confidence 45689999999999999987654 457999988543 699999999999875 34467655444321
Q ss_pred CCCCCCeeeccccccccceeeeeecCeE
Q 007002 80 GGSSSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 80 ~~~~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
...++......+-.|+|+++|..+.+.+
T Consensus 300 ~~~~~~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2e0a_A 300 PVMDNSRNAPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp C------CCCSSCSSCHHHHHHHHHHHT
T ss_pred CCcCcCCCCCCCCcccCHHHHHHHHHHh
Confidence 0000001112233799999998888654
No 48
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.46 E-value=9.8e-05 Score=79.31 Aligned_cols=92 Identities=21% Similarity=0.352 Sum_probs=61.6
Q ss_pred CchhhHHHHHHHHhHHHhhhcCC-----CCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 79 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~-----~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf 79 (622)
+.-|.+++.++|+||+.+...|. ...|.|.+..++ .|+|+|+|.|||.+.. +-+|...+++.+-
T Consensus 241 ~~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~--------~~if~~f~~~~~~ 312 (407)
T 2q8g_A 241 PSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKI--------DRLFNYMYSTAPR 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH--------GGGGCTTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHH--------HHHhCccccCCCC
Confidence 45689999999999999887653 347999888533 5999999999998753 3467655444321
Q ss_pred CCCCCCeeeccccccccceeeeeecCeE
Q 007002 80 GGSSSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 80 ~~~~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
...++......+-.|+|+++|..+.+.+
T Consensus 313 ~~~~~~~~~~~~G~GLGL~Ivr~i~~~~ 340 (407)
T 2q8g_A 313 PRVETSRAVPLAGFGYGLPISRLYAQYF 340 (407)
T ss_dssp CCSSCCSCCCSSCTTCHHHHHHHHHHHT
T ss_pred CCccccCCCCCCCcCCCHHHHHHHHHHh
Confidence 1000000111233799999998888654
No 49
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.43 E-value=0.00012 Score=77.99 Aligned_cols=92 Identities=24% Similarity=0.341 Sum_probs=60.4
Q ss_pred CchhhHHHHHHHHhHHHhhhcCC------CCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGY------ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 78 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~------~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~k 78 (622)
+.-|.+++.++|.||+.+...|. .+.|.|++..++ .|+|+|+|.|||.+..+ -+|...+++.+
T Consensus 236 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~--------~iF~~f~~~~~ 307 (388)
T 1gkz_A 236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLD--------RVMDYHFTTAE 307 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTT--------TTTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHH--------HhcCcccccCC
Confidence 45689999999999999987653 137999988543 59999999999988643 35554443332
Q ss_pred -----------CCCC---CCCeeeccccccccceeeeeecCeE
Q 007002 79 -----------FGGS---SSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 79 -----------f~~~---~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
|+.- ........+-.|+|+++|..+.+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~ 350 (388)
T 1gkz_A 308 ASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYL 350 (388)
T ss_dssp ------------------------CCSCSSCHHHHHHHHHHHT
T ss_pred CcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHh
Confidence 1100 0000111133799999999988765
No 50
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.37 E-value=9.8e-05 Score=65.19 Aligned_cols=44 Identities=39% Similarity=0.576 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCc
Q 007002 10 GLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPID 56 (622)
Q Consensus 10 gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g--~i~V~DnGrGIP~~ 56 (622)
-|.+++.|+|+||+.++ ....|.|++..++ .|+|+|||+|||.+
T Consensus 43 ~l~~il~nll~NA~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 88 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA---AASTLTVRVKVDDDLCIEVTDNGRGMPDE 88 (129)
T ss_dssp HHHHHHHHHHHHCCCCS---SCCEEEEEEEESSEEEEEEEECCCCCTTT
T ss_pred HHHHHHHHHHHHHHHhC---CCceEEEEEEEcCCEEEEEecCCCCCCcc
Confidence 46667777777777764 4578999888544 58999999999865
No 51
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.35 E-value=0.00012 Score=78.15 Aligned_cols=91 Identities=19% Similarity=0.347 Sum_probs=59.4
Q ss_pred CchhhHHHHHHHHhHHHhhhcCC-----CCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 79 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~-----~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf 79 (622)
+.-|.+++.++|+||+.+...|. ...|.|.+..++ .|+|+|+|.|||.+. .+-+|...+++..-
T Consensus 229 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~--------~~~iF~~f~~~~~~ 300 (394)
T 2btz_A 229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRK--------IERLFSYMYSTAPT 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHH--------HHHHTCTTTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHH--------HHHHhcccccCCCC
Confidence 45689999999999999987764 247999888543 599999999999875 34567654443321
Q ss_pred CCCCCCeeeccccccccceeeeeecCeE
Q 007002 80 GGSSSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 80 ~~~~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
...+ ......+-.|+|+++|..+.+.+
T Consensus 301 ~~~~-~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2btz_A 301 PQPG-TGGTPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp --------------CCHHHHHHHHHHHT
T ss_pred CCcc-cCCCCCCCccCCHHHHHHHHHHh
Confidence 0000 00111223799999999888654
No 52
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.33 E-value=9.3e-05 Score=79.86 Aligned_cols=92 Identities=15% Similarity=0.316 Sum_probs=59.2
Q ss_pred CchhhHHHHHHHHhHHHhhhcCC------CCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGY------ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 78 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~------~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~k 78 (622)
+.-|.+++.++|+||+.+...|. ...|.|.+..++ .|+|.|+|.|||.+.. +-+|...+++.+
T Consensus 251 ~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l--------~~iF~~f~~~~~ 322 (419)
T 1y8o_A 251 PSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKI--------DRLFNYMYSTAP 322 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHH--------GGGGCTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHH--------HHHhCcccccCC
Confidence 45689999999999999887653 457999888533 6999999999998763 346765444332
Q ss_pred CCCCCCCeeeccccccccceeeeeecCeE
Q 007002 79 FGGSSSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 79 f~~~~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
-...++......+-.|+|+++|..+.+.+
T Consensus 323 ~~~~~~~~~~~~~G~GLGL~I~k~iv~~~ 351 (419)
T 1y8o_A 323 RPSLEPTRAAPLAGFGYGLPISRLYARYF 351 (419)
T ss_dssp ----------CC--CTTHHHHHHHHHHHT
T ss_pred CCCccccCCCCcCCeecCHHHHHHHHHHh
Confidence 10000001111233799999998887654
No 53
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.33 E-value=0.00017 Score=71.55 Aligned_cols=86 Identities=22% Similarity=0.335 Sum_probs=55.2
Q ss_pred CCchhhHHHHHHHHhHHHhhhcC-CCCeEEEEEeC-CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCC
Q 007002 7 GPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 82 (622)
Q Consensus 7 ~~~gL~~lv~EildNaiDe~~~g-~~~~I~V~l~~-~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~ 82 (622)
+..-|.+++..+|+||+++...+ ....|.|.+.. ++ .|+|.|||+|||.+..+ -+|...+.+..-
T Consensus 135 d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~--- 203 (258)
T 2c2a_A 135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKD--------RIFEQFYRVDSS--- 203 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTT--------GGGSTTCCCC-----
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHH--------hhccccccCCCC---
Confidence 44568899999999999986443 23568888774 33 59999999999988642 356543322110
Q ss_pred CCCeeeccccccccceeeeeecCe
Q 007002 83 SSGYSVSGGLHGVGLSVVNALSES 106 (622)
Q Consensus 83 ~~~~k~sgG~~GvG~s~vNalS~~ 106 (622)
.-....| .|+|+++|..+.+.
T Consensus 204 --~~~~~~G-~GLGL~i~~~iv~~ 224 (258)
T 2c2a_A 204 --LTYEVPG-TGLGLAITKEIVEL 224 (258)
T ss_dssp ----------CCCTHHHHHHHHHH
T ss_pred --CCCCCCC-cchHHHHHHHHHHH
Confidence 0011223 79999988877654
No 54
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.28 E-value=0.00016 Score=65.92 Aligned_cols=79 Identities=27% Similarity=0.464 Sum_probs=46.1
Q ss_pred CchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCC-C------------eEEEEECCCCccCcccCCCCcchhhhhheeec
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N------------SVSVADNGRGIPIDLHPATNKSALETVLTVLH 74 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~-g------------~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ 74 (622)
..-|.+++.++|+||+.++..+ ...|.|.+..+ + .|+|.|||.|||.+..+ -+|....
T Consensus 46 ~~~l~~il~nLl~NAik~~~~~-~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~--------~lf~~~~ 116 (160)
T 1r62_A 46 PDQIEQVLLNIVRNALQALGPE-GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQD--------TLFYPMV 116 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHH--------HhhCccc
Confidence 4558899999999999987542 46788877632 2 48999999999987532 2443322
Q ss_pred cCCCCCCCCCCeeeccccccccceeeeeecCeE
Q 007002 75 AGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 75 ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
++ ..+-+|+|++++..+.+.+
T Consensus 117 ~~------------~~~g~GlGL~i~~~~~~~~ 137 (160)
T 1r62_A 117 SG------------REGGTGLGLSIARNLIDQH 137 (160)
T ss_dssp -------------------CHHHHHHHHHHHHT
T ss_pred cC------------CCCCCccCHHHHHHHHHHC
Confidence 11 1123799999998877543
No 55
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.18 E-value=0.0006 Score=60.40 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=35.5
Q ss_pred chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCcc
Q 007002 9 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDL 57 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~-g--~i~V~DnGrGIP~~~ 57 (622)
.-|.+++.|+|+||+.++ .++.|.|.+..+ + .|+|+|||+|||.+.
T Consensus 39 ~~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 87 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 87 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCSS
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEEEEEEEEeCCEEEEEEEECCcCcCccc
Confidence 345678888888888874 356899888743 3 699999999999764
No 56
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.18 E-value=0.0003 Score=69.97 Aligned_cols=78 Identities=24% Similarity=0.479 Sum_probs=54.0
Q ss_pred CchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 84 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g---~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~ 84 (622)
..-|..++.++|+||+++...+ ..|.|.+..++ .|+|.|||.|||.+..+ -+|.... ..
T Consensus 153 ~~~l~~il~nLl~NA~~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~~~------~~-- 214 (268)
T 4ew8_A 153 GKRLAQTLDHLVENALRQTPPG--GRVTLSARRALGEVRLDVSDTGRGVPFHVQA--------HIFDRFV------GR-- 214 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEECSSEEEEEEEESSCCCCHHHHT--------TTTSTTC------CC--
T ss_pred HHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEecCCEEEEEEEcCCCCCCHHHHH--------HHHHHHh------cC--
Confidence 3458899999999999986443 68888888543 69999999999987532 2443221 11
Q ss_pred CeeeccccccccceeeeeecCeE
Q 007002 85 GYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 85 ~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
..+-.|+|++++..+.+.+
T Consensus 215 ----~~~g~GlGL~i~~~~~~~~ 233 (268)
T 4ew8_A 215 ----DRGGPGLGLALVKALVELH 233 (268)
T ss_dssp ----SSCCCTTHHHHHHHHHHHT
T ss_pred ----CCCCCcccHHHHHHHHHHc
Confidence 1123799999888776543
No 57
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.17 E-value=0.00018 Score=69.11 Aligned_cols=78 Identities=31% Similarity=0.352 Sum_probs=41.6
Q ss_pred chhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCCCeee
Q 007002 9 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 88 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~k~ 88 (622)
.-|.+++.++|+||+.+... ...|.|.+..++ |+|+|||.|||.+..+ -+|....++.+ .
T Consensus 116 ~~l~~il~nLl~NAi~~~~~--~~~i~i~~~~~~-i~V~D~G~Gi~~~~~~--------~if~~f~~~~~---------~ 175 (222)
T 3jz3_A 116 LLLSLLVRNLLDNAVRYSPQ--GSVVDVTLNADN-FIVRDNGPGVTPEALA--------RIGERFYRPPG---------Q 175 (222)
T ss_dssp HHHHHHHHHHHHHHHHTCCT--TCEEEEEECSSE-EEEECSCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCC--CCeEEEEEccCe-EEEEECCCCCCHHHHH--------HHHhhhccCCC---------C
Confidence 45788999999999988533 456888888655 9999999999988643 24544332211 1
Q ss_pred ccccccccceeeeeecCe
Q 007002 89 SGGLHGVGLSVVNALSES 106 (622)
Q Consensus 89 sgG~~GvG~s~vNalS~~ 106 (622)
..+-.|+|++++..+.+.
T Consensus 176 ~~~g~GlGL~i~~~i~~~ 193 (222)
T 3jz3_A 176 TATGSGLGLSIVQRIAKL 193 (222)
T ss_dssp ------CTHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHHH
Confidence 112379999988877643
No 58
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.01 E-value=0.00042 Score=73.80 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=52.6
Q ss_pred hhHHHHHHHHhHHHhhhc--------C--CCCeEEEEEeCC-C--eEEEEECCCCccCcccCC----------------C
Q 007002 11 LHHLVYEILDNAVDEAQA--------G--YASNIEVALLAD-N--SVSVADNGRGIPIDLHPA----------------T 61 (622)
Q Consensus 11 L~~lv~EildNaiDe~~~--------g--~~~~I~V~l~~~-g--~i~V~DnGrGIP~~~~~~----------------~ 61 (622)
|..++.++|.||+|+... | ...+|.|.+..+ + .|+|+|||+|||.+.... .
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~ 186 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 186 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSC
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCC
Confidence 344599999999999632 1 356788888753 3 599999999999875310 1
Q ss_pred CcchhhhhheeeccCCCCCCCCCCeeeccccccccceeeeeecCeE
Q 007002 62 NKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 62 g~~~~E~v~~~l~ag~kf~~~~~~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
...+.+.+|...+++.. . ....+-+|+|+++|..+.+.+
T Consensus 187 ~~~~~~~iF~p~fst~~------~-~~~~~G~GlGL~iv~~~v~~~ 225 (379)
T 1b3q_A 187 DQEILNFLFVPGFSTKE------K-VSEVSGRGVGMDVVKNVVESL 225 (379)
T ss_dssp THHHHSGGGSTTCC------------------CCCSHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCccCC------c-cCCCCCccccHHHHHHHHHHC
Confidence 11123456643222211 1 111123799999988776544
No 59
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.00 E-value=0.00037 Score=71.85 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=49.7
Q ss_pred CchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 84 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~-~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~ 84 (622)
..-|.+++.++|.||+.+.. ....|.|.+.. ++ .|+|.|||+|||.+..+ -+|....++
T Consensus 242 ~~~l~~vl~nLl~NA~k~~~--~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~--------~if~~f~~~-------- 303 (349)
T 3a0r_A 242 RTRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFTT-------- 303 (349)
T ss_dssp HHHHHHHHHHHHTHHHHTTC--TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGT--------TTSSSCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCCEEEEEEEecCCEEEEEEEECCCCCChHHHh--------hcCCCCccC--------
Confidence 34588899999999999852 24678888874 33 59999999999988643 255432211
Q ss_pred Ceeeccccccccceeeeeec
Q 007002 85 GYSVSGGLHGVGLSVVNALS 104 (622)
Q Consensus 85 ~~k~sgG~~GvG~s~vNalS 104 (622)
+ .+-+|+|++++.-+.
T Consensus 304 --~--~~g~GlGL~i~~~~v 319 (349)
T 3a0r_A 304 --K--TQGTGLGLSICRKII 319 (349)
T ss_dssp ----------CCCTHHHHHH
T ss_pred --C--CCCccchHHHHHHHH
Confidence 1 122799999887665
No 60
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=96.89 E-value=0.00042 Score=67.56 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=52.9
Q ss_pred CchhhHHHHHHHHhHHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCC
Q 007002 8 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 84 (622)
Q Consensus 8 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~l~~-~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~ 84 (622)
..-|..++.++|+||+.+... ...|.|.+.. ++ .|+|.|||.|||.+.. +-+|....+ .
T Consensus 121 ~~~l~~il~nLl~NA~~~~~~--~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~--------~~if~~~~~------~-- 182 (244)
T 3d36_A 121 REKFRQCLLNVMKNAIEAMPN--GGTLQVYVSIDNGRVLIRIADTGVGMTKEQL--------ERLGEPYFT------T-- 182 (244)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT--CEEEEEEEEEETTEEEEEEEECSSCCCHHHH--------HHTTSTTCC------S--
T ss_pred HHHHHHHHHHHHHHHHHhccC--CCeEEEEEEEeCCEEEEEEEecCCCCCHHHH--------HHHhccccc------C--
Confidence 456888999999999987532 4578887774 33 5999999999997752 334432211 1
Q ss_pred CeeeccccccccceeeeeecCeE
Q 007002 85 GYSVSGGLHGVGLSVVNALSESL 107 (622)
Q Consensus 85 ~~k~sgG~~GvG~s~vNalS~~~ 107 (622)
+.. +-+|+|++++..+.+.+
T Consensus 183 --~~~-~g~GlGL~i~~~i~~~~ 202 (244)
T 3d36_A 183 --KGV-KGTGLGMMVVYRIIESM 202 (244)
T ss_dssp --SGG-GCCSCHHHHHHHHHHHT
T ss_pred --CCC-CCcchhHHHHHHHHHHc
Confidence 111 23799999888776543
No 61
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=96.72 E-value=0.0013 Score=57.34 Aligned_cols=45 Identities=29% Similarity=0.461 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCcc
Q 007002 10 GLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDL 57 (622)
Q Consensus 10 gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~g--~i~V~DnGrGIP~~~ 57 (622)
-|..++.|+++||+.++ ..+.|.|++..++ .++|+|||+|||.+.
T Consensus 39 ~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHA---NATSLAINVSVEDDVRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCT---TCCEEEEEEEEEEEEEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEEEeCCCEEEEEEECCCCCCccc
Confidence 45677778888887764 3468888887433 699999999999663
No 62
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.67 E-value=0.0018 Score=62.11 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHhHHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCcc
Q 007002 10 GLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDL 57 (622)
Q Consensus 10 gL~~lv~EildNaiDe~~~g~~~~I~V~l~~~-g--~i~V~DnGrGIP~~~ 57 (622)
.|..++.|+|.||+.++ .++.|.|.+..+ + .|+|.|||+|||.+.
T Consensus 130 ~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 177 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 177 (218)
T ss_dssp HHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCC---
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEEEEeCCEEEEEEEECCcCCCCCC
Confidence 35678888888888875 356888888843 3 699999999999764
No 63
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.49 E-value=0.0035 Score=67.07 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=57.0
Q ss_pred chhhHHHHHHHHhHHHhhhcC-CCCeEEEEEeC--CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCC
Q 007002 9 RGLHHLVYEILDNAVDEAQAG-YASNIEVALLA--DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 83 (622)
Q Consensus 9 ~gL~~lv~EildNaiDe~~~g-~~~~I~V~l~~--~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~ 83 (622)
.-+.-++.|++.||+.++... ....|.|.+.. ++ .|+|+|+|+|+|.. ++.
T Consensus 296 ~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~-----------------------~~~- 351 (399)
T 3ke6_A 296 ADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR-----------------------DGA- 351 (399)
T ss_dssp HHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC-----------------------CCC-
Confidence 346779999999999997532 25678888873 33 59999999999864 010
Q ss_pred CCeeeccccccccceeeeeecCeEEEEEEeCCEEEEEEEec
Q 007002 84 SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSR 124 (622)
Q Consensus 84 ~~~k~sgG~~GvG~s~vNalS~~~~V~v~r~g~~~~q~f~~ 124 (622)
+-+|.|+.++..|+..+.+....+|+....+|.-
T Consensus 352 -------~~~G~GL~lv~~l~~~~~~~~~~~G~~v~~~~~~ 385 (399)
T 3ke6_A 352 -------RGRGRGLAMAEALVSEARIMHGAGGTTATLTHRL 385 (399)
T ss_dssp ------------CHHHHHTTSSEEEEEEETTEEEEEEEEEC
T ss_pred -------CCCCcHHHHHHHHHHheeeEECCCcEEEEEEEEc
Confidence 2368999999999998887655566776666653
No 64
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=96.26 E-value=0.0039 Score=58.71 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=36.2
Q ss_pred hhHHHHHHHHhHHHhhhc----------CCCCeEEEEEeCC-C--eEEEEECCCCccCcc
Q 007002 11 LHHLVYEILDNAVDEAQA----------GYASNIEVALLAD-N--SVSVADNGRGIPIDL 57 (622)
Q Consensus 11 L~~lv~EildNaiDe~~~----------g~~~~I~V~l~~~-g--~i~V~DnGrGIP~~~ 57 (622)
+.+++.++|+||+.++.. .....|.|.+..+ + .|+|.|||+|||.+.
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 107 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 455599999999998632 2356888888753 3 599999999999874
No 65
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=95.84 E-value=0.0028 Score=63.00 Aligned_cols=75 Identities=23% Similarity=0.174 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHhHHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCcccCCCCcchhhhhheeeccCCCCCCCCCCe
Q 007002 10 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 86 (622)
Q Consensus 10 gL~~lv~EildNaiDe~~~g~~~~I~V~l~~-~g--~i~V~DnGrGIP~~~~~~~g~~~~E~v~~~l~ag~kf~~~~~~~ 86 (622)
-+.+++.-+|.||+++...| .+|.|.+.. ++ .|+|+|+|+|||++.+ ..+-+|.. |...
T Consensus 146 ~~~qvl~NLl~NA~~a~~~g--g~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~------~~~~~f~~------~~~~---- 207 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAG--GVATVKGVAADGRFSIIADAKGPRARLRPE------VLAGLKGE------PLAE---- 207 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTC--CEEEEEEEEETTEEEEEEEEESTTCCCCHH------HHHHHTTC------CCCS----
T ss_pred HHHHHHHHHHHHHHHhcCCC--CeEEEEEEEECCEEEEEEEEcCCCCCCCHH------HHHHhcCC------CCCC----
Confidence 45677777888887765333 578888874 34 5999999999987632 23444432 2211
Q ss_pred eeccccccccceeeeeec
Q 007002 87 SVSGGLHGVGLSVVNALS 104 (622)
Q Consensus 87 k~sgG~~GvG~s~vNalS 104 (622)
+. .| +|+|+++|-.+.
T Consensus 208 ~~-~G-~GLGLai~~~iv 223 (247)
T 4fpp_A 208 GL-GG-PWVQAAYLNALV 223 (247)
T ss_dssp SC-HH-HHHHHHHHHHHH
T ss_pred CC-CC-ccHHHHHHHHHH
Confidence 11 23 699999876554
No 66
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=83.51 E-value=1.3 Score=42.24 Aligned_cols=42 Identities=10% Similarity=0.072 Sum_probs=30.0
Q ss_pred HHHHHhHHHhhhc----CCCCeEEEEEeCC--C---eEEEEECCCCccCcc
Q 007002 16 YEILDNAVDEAQA----GYASNIEVALLAD--N---SVSVADNGRGIPIDL 57 (622)
Q Consensus 16 ~EildNaiDe~~~----g~~~~I~V~l~~~--g---~i~V~DnGrGIP~~~ 57 (622)
-.+++||.++..+ .....|.|.+..+ + .|+|.|+|++||.+.
T Consensus 111 gnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~ 161 (192)
T 1ixm_A 111 AKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSA 161 (192)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGG
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHH
Confidence 4456666555422 3467899998865 3 699999999999875
No 67
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=79.45 E-value=12 Score=41.09 Aligned_cols=100 Identities=14% Similarity=0.260 Sum_probs=62.9
Q ss_pred eEEEEEEEEcCCC---CCceeeeeeCceecc-CCCcchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEE
Q 007002 234 ITIDLALQWCSDA---YSDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 309 (622)
Q Consensus 234 i~veval~~s~~~---~~~~~~SFVN~I~T~-~GGTHv~g~~~al~~~in~~~kk~~~~k~~~~~l~~~diregl~~~vs 309 (622)
.-||+|+.|--+. -.-.++-|+|-||.. +.| ..++++++... ...+. +.++ =...+.++|+
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~------~~~~~~~~~~~-~w~~y----~~~~----~~~~~~~~v~ 414 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEK------SDVIWKVVEEL-DWKRY----GIES----DQYQMVVMVH 414 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGG------GCHHHHHHHHS-CTTSS----SCCC----SSBCEEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCC------cchhhhhhccC-Chhhc----CcCC----CCCCEEEEEE
Confidence 4589999996221 124799999999986 444 24566666432 22221 0111 0236789999
Q ss_pred EeecCCCCCCccccccCC-chhhhhhhhhh---HHHHHHHHhh
Q 007002 310 VRVPNPEFEGQTKTRLGN-PEVRKVVDQSV---QEYLTEYLEL 348 (622)
Q Consensus 310 ~~i~nP~FegQTK~kL~n-~~v~~~v~~~v---~~~l~~~l~~ 348 (622)
+-.++-.|.|-.|+.++. +|+...+...+ ...|..|+.+
T Consensus 415 i~st~vp~~~~~Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~ 457 (530)
T 2zbk_B 415 LCSTKIPYKSAGKESIAEVENIEKEIKNALMEVARKLKQYLSE 457 (530)
T ss_dssp EEESSCCBSSSSCSCBCCCHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred eccCCCCcCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 55544444333 2355556543
No 68
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=76.88 E-value=21 Score=38.61 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=56.1
Q ss_pred eEEEEEEEEcCCC---CCceeeeeeCceecc-CCCcchHHHHHHHHHHHHHHH-hhccCCCCCCCCCCHHhHhcccEEEE
Q 007002 234 ITIDLALQWCSDA---YSDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVREGLTCII 308 (622)
Q Consensus 234 i~veval~~s~~~---~~~~~~SFVN~I~T~-~GGTHv~g~~~al~~~in~~~-kk~~~~k~~~~~l~~~diregl~~~v 308 (622)
.-||+|+.|--+. -.-.++-|+|-||.. +.| ..++++++...- +..++. + =...+.++|
T Consensus 351 f~ve~~~a~gg~~~~~~~~~~~r~anr~pl~~~~~------~~~~~~~~~~~~w~~y~~~------~----~~~~~~~~v 414 (471)
T 1mu5_A 351 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEK------SDVIWKVVEELDWKRYGIE------S----DQYQMVVMV 414 (471)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECSCGG------GSHHHHHHHHSCGGGGTCC------S----SCBCEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEeccCceeecCC------cchhhhhhccCChhhcCcC------C----CCCCEEEEE
Confidence 4589999996221 124799999999986 444 245666664321 222321 1 023678999
Q ss_pred EEeecCCCCCCccccccCC-chhhhhh
Q 007002 309 SVRVPNPEFEGQTKTRLGN-PEVRKVV 334 (622)
Q Consensus 309 s~~i~nP~FegQTK~kL~n-~~v~~~v 334 (622)
++-.++-.|.|-.|+.++. +|+...+
T Consensus 415 ~i~st~vp~~~~~k~~i~~~~ei~~ei 441 (471)
T 1mu5_A 415 HLCSTKIPYKSAGKESIAEVEDIEKEI 441 (471)
T ss_dssp EEEESSCCBSSTTCCCBCCCHHHHHHH
T ss_pred EeccCCCCcCCCCccccCCcHHHHHHH
Confidence 9999999999999999885 4544433
No 69
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=41.06 E-value=8.2 Score=33.74 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.7
Q ss_pred ccee-EEEeecCCcCCcchhhhHHHHHH
Q 007002 474 RYHK-IIILTDADVDGAHIRTLLLTFFY 500 (622)
Q Consensus 474 RY~k-iiimtDaD~DG~HI~~Llltff~ 500 (622)
||.. |||+||.|.=|..|+.-+...|-
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l~ 87 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELLS 87 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhcC
Confidence 3666 99999999999999988876653
No 70
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=37.41 E-value=1.5e+02 Score=33.15 Aligned_cols=87 Identities=13% Similarity=0.282 Sum_probs=54.1
Q ss_pred eEEEEEEEEcCC---CCCceeeeeeCceec-cCCCcchHHHHHHHHHHHHHHH-hhccCCCCCCCCCCHHhHh-cccEEE
Q 007002 234 ITIDLALQWCSD---AYSDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVR-EGLTCI 307 (622)
Q Consensus 234 i~veval~~s~~---~~~~~~~SFVN~I~T-~~GGTHv~g~~~al~~~in~~~-kk~~~~k~~~~~l~~~dir-egl~~~ 307 (622)
.-||+|+.|--+ .-.-.++-|+|-||- .+.|. .++++++..+- +..++.... ..+- .-+.+|
T Consensus 353 fivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~~w~~y~~~~~~------~~~p~~~~~~~ 420 (621)
T 2q2e_B 353 FVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDIKWKQYGLNQPG------GGIPVGPVILL 420 (621)
T ss_dssp EEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHSCCTTTTCCCCS------SSSCCSSCCEE
T ss_pred eEEEEeeecCCCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhCChhhcCcCCCC------CCCCCCCEEEE
Confidence 458999998621 112479999999983 45554 34566664431 222221110 0011 256899
Q ss_pred EEEeecCCCCCCccccccCC-chhhh
Q 007002 308 ISVRVPNPEFEGQTKTRLGN-PEVRK 332 (622)
Q Consensus 308 vs~~i~nP~FegQTK~kL~n-~~v~~ 332 (622)
|++--++-.|.|-.|+.+++ ||+..
T Consensus 421 v~~~st~vp~~~~~ke~ia~~~ei~~ 446 (621)
T 2q2e_B 421 IHVASINVPFTSESKDAIADIPVIKE 446 (621)
T ss_dssp EEEECSSCCBSSSSSSSBCCCHHHHH
T ss_pred EEEeecCCCcCCcchhhhcCCHHHHH
Confidence 99999999999999999985 34433
No 71
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=30.32 E-value=29 Score=31.76 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=30.4
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcC----CCCeEEEEEeCCCeEEEEECCCC
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAG----YASNIEVALLADNSVSVADNGRG 52 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g----~~~~I~V~l~~~g~i~V~DnGrG 52 (622)
+|+||++.+.|.- -++|..|+...+.- ..+.|...+..+| |++.||-|=
T Consensus 19 ~yLgSvevesltG--~~av~kAv~~~l~~~~~~~~t~V~fkVS~qG-ItLtD~~rK 71 (157)
T 3hqc_A 19 LYLTSVETESLTG--PQAVARASSAALSCSPRPTPAVVHFKVSAQG-ITLTDNQRK 71 (157)
T ss_dssp EEEEEEECTTCCH--HHHHHHHHHHHHHCC---CCEEEEEEEETTE-EEEEEEETT
T ss_pred EEeceEecCCCCC--hHHHHHHHHHHHhcCCCCCCeEEEEEEeCCC-ceEEecccc
Confidence 4899987655533 24555555555431 2445666666665 999999763
No 72
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=29.14 E-value=14 Score=32.21 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=37.0
Q ss_pred cceeEEEeecCCcCCcchhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhC
Q 007002 474 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 544 (622)
Q Consensus 474 RY~kiiimtDaD~DG~HI~~Llltff~~~~p~Li~~g~v~~~~tPl~kv~~gk~~~~~~~~~e~~~~~~~~ 544 (622)
++..|||+||.|.=|.-||..|...| |. ..+.|+...|. |=+. -+..+..+.+.+.
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~l----p~---~~hafi~r~~~-----gVE~---a~~~~I~~aL~~~ 104 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMF----PE---AEHLYIDRAYR-----EVAA---APIWHLAQVLLRA 104 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHC----TT---SEEECCCTTTC-----STTT---SCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHC----CC---CcEEeccCCcc-----Cccc---CCHHHHHHHHHhc
Confidence 46789999999999999998775544 33 25777777664 3111 2455666665553
No 73
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=27.15 E-value=42 Score=21.16 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=14.7
Q ss_pred hHHHHHHHHhHHHhhhcC
Q 007002 12 HHLVYEILDNAVDEAQAG 29 (622)
Q Consensus 12 ~~lv~EildNaiDe~~~g 29 (622)
.+-+.|++||++..+.+.
T Consensus 11 ekqieelldncietfvae 28 (31)
T 4h62_V 11 EKQIEELLDNCIETFVAE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 467899999999987764
No 74
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=23.67 E-value=55 Score=29.10 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=29.1
Q ss_pred CeecCCCCchhhHHHHHHHHhHHHhhhcC----CCCeEEEEEeCCCeEEEEECCCCc
Q 007002 1 MYIGSTGPRGLHHLVYEILDNAVDEAQAG----YASNIEVALLADNSVSVADNGRGI 53 (622)
Q Consensus 1 MYiGst~~~gL~~lv~EildNaiDe~~~g----~~~~I~V~l~~~g~i~V~DnGrGI 53 (622)
+|+||++.+.|.- -|+|.-|+...++. ..+.+...+..+| |++.||.|-.
T Consensus 7 ~yLgSvevesltG--~~av~~Ai~~~l~~~~~~~~t~vh~kVS~qG-ItLtD~~rk~ 60 (134)
T 1wvh_A 7 LFINSVEMESLTG--PQAISKAVAETLVADPTPTATIVHFKVSAQG-ITLTDNQRKL 60 (134)
T ss_dssp EEEEEEEEETCCH--HHHHHHHHHHHHTCSSCCCCEEEEEEEETTE-EEEEESSSCS
T ss_pred EEEEEEEecCCcC--HHHHHHHHHHHHhcCCCCCCeEEEEEEEcCC-CeEEccCcce
Confidence 4889876544433 24444444444321 2345566666554 9999997654
Done!