Your job contains 1 sequence.
>007003
MARLLLKAPYLHIRVLMASRCFCSFSSSLFFKPRTNFAIRGVSSQVLTRSNVVLPRAFLS
SSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVD
EAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS
GYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQ
GTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA
GGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG
THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR
LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLR
SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEA
AMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK
TLFDEGCIYVGVPPLYKVCFWL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007003
(622 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2146698 - symbol:GYRB2 "DNA GYRASE B2" species... 2256 6.4e-234 1
UNIPROTKB|Q5NBJ3 - symbol:GYRB "DNA gyrase subunit B, chl... 2103 1.0e-217 1
UNIPROTKB|Q7NHM9 - symbol:gyrB "DNA gyrase subunit B" spe... 1554 1.6e-159 1
UNIPROTKB|A8IIG8 - symbol:TOP3 "DNA gyrase subunit B-like... 1398 5.3e-143 1
TIGR_CMR|CHY_2705 - symbol:CHY_2705 "DNA gyrase, B subuni... 1355 1.9e-138 1
UNIPROTKB|P77993 - symbol:gyrB "DNA gyrase subunit B" spe... 1299 1.6e-132 1
UNIPROTKB|P05652 - symbol:gyrB "DNA gyrase subunit B" spe... 1295 4.4e-132 1
UNIPROTKB|Q8TQG0 - symbol:gyrB "DNA gyrase subunit B" spe... 1293 7.1e-132 1
TIGR_CMR|BA_0005 - symbol:BA_0005 "DNA gyrase, B subunit"... 1260 2.2e-128 1
UNIPROTKB|O67137 - symbol:gyrB "DNA gyrase subunit B" spe... 1231 2.6e-125 1
UNIPROTKB|Q74H89 - symbol:gyrB "DNA gyrase subunit B" spe... 1221 3.0e-124 1
TIGR_CMR|DET_0004 - symbol:DET_0004 "DNA gyrase, B subuni... 1221 3.0e-124 1
TIGR_CMR|GSU_0003 - symbol:GSU_0003 "DNA gyrase, B subuni... 1221 3.0e-124 1
UNIPROTKB|Q8A277 - symbol:gyrB "DNA gyrase subunit B" spe... 1210 4.4e-123 1
UNIPROTKB|Q8FA30 - symbol:gyrB "DNA gyrase subunit B" spe... 1201 4.0e-122 1
TIGR_CMR|CJE_0003 - symbol:CJE_0003 "DNA gyrase, B subuni... 1201 4.0e-122 1
UNIPROTKB|Q3KMH2 - symbol:gyrB_1 "DNA gyrase subunit B" s... 1190 5.8e-121 1
UNIPROTKB|O08399 - symbol:gyrB "DNA gyrase subunit B" spe... 1189 7.4e-121 1
UNIPROTKB|P0C5C5 - symbol:gyrB "DNA gyrase subunit B" spe... 750 2.2e-118 2
TIGR_CMR|SPO_0155 - symbol:SPO_0155 "DNA gyrase, B subuni... 1163 4.2e-118 1
UNIPROTKB|Q89W70 - symbol:gyrB "DNA gyrase subunit B" spe... 1158 1.4e-117 1
UNIPROTKB|Q9KVX3 - symbol:gyrB "DNA gyrase subunit B" spe... 1155 3.0e-117 1
TIGR_CMR|VC_0015 - symbol:VC_0015 "DNA gyrase, subunit B"... 1155 3.0e-117 1
UNIPROTKB|P0AES6 - symbol:gyrB species:83333 "Escherichia... 1154 3.8e-117 1
TIGR_CMR|BA_3657 - symbol:BA_3657 "DNA topoisomerase IV, ... 1147 2.1e-116 1
TIGR_CMR|CBU_0004 - symbol:CBU_0004 "DNA gyrase, B subuni... 1144 4.4e-116 1
UNIPROTKB|Q59192 - symbol:parE "DNA topoisomerase 4 subun... 1130 1.3e-114 1
UNIPROTKB|A6UX65 - symbol:gyrB "DNA gyrase subunit B" spe... 1112 1.1e-112 1
TIGR_CMR|SO_0011 - symbol:SO_0011 "DNA gyrase, B subunit"... 1106 4.6e-112 1
TIGR_CMR|NSE_0721 - symbol:NSE_0721 "DNA gyrase, B subuni... 1103 9.7e-112 1
UNIPROTKB|P35886 - symbol:gyrB "DNA gyrase subunit B" spe... 1100 2.0e-111 1
TIGR_CMR|APH_0716 - symbol:APH_0716 "DNA gyrase, B subuni... 1088 3.8e-110 1
TIGR_CMR|ECH_0620 - symbol:ECH_0620 "DNA gyrase, B subuni... 1088 3.8e-110 1
UNIPROTKB|A9WGP2 - symbol:gyrB "DNA gyrase subunit B" spe... 1083 1.3e-109 1
UNIPROTKB|Q7RHG3 - symbol:PY04024 "DNA topoisomerase II, ... 522 1.4e-107 4
GENEDB_PFALCIPARUM|PFL1915w - symbol:PFL1915w "dna gyrase... 503 3.7e-105 4
UNIPROTKB|Q8I528 - symbol:GyrB "Term=DNA gyrase subunit B... 503 3.7e-105 4
UNIPROTKB|Q9RVW5 - symbol:DR_0906 "DNA gyrase, subunit B"... 1021 4.7e-103 1
UNIPROTKB|O69998 - symbol:O69998 "Putative DNA gyrase sub... 553 4.3e-94 2
UNIPROTKB|Q89M38 - symbol:gyrB "DNA gyrase subunit B" spe... 884 1.6e-88 1
TIGR_CMR|SPO_1253 - symbol:SPO_1253 "DNA topoisomerase IV... 862 3.3e-86 1
UNIPROTKB|A6VD80 - symbol:parE "DNA topoisomerase IV, B s... 801 9.7e-80 1
TIGR_CMR|SO_3899 - symbol:SO_3899 "DNA topoisomerase IV, ... 792 8.7e-79 1
TIGR_CMR|CBU_0064 - symbol:CBU_0064 "DNA topoisomerase IV... 785 4.8e-78 1
UNIPROTKB|P20083 - symbol:parE species:83333 "Escherichia... 779 2.1e-77 1
UNIPROTKB|Q9KPD9 - symbol:VC_2431 "Topoisomerase IV, subu... 771 1.5e-76 1
TIGR_CMR|VC_2431 - symbol:VC_2431 "topoisomerase IV, subu... 771 1.5e-76 1
TAIR|locus:2146658 - symbol:GYRB3 "DNA GYRASE B3" species... 656 2.3e-64 1
UNIPROTKB|Q8A3C1 - symbol:BT_3033 "DNA topoisomerase IV s... 338 2.3e-42 2
UNIPROTKB|Q3KL33 - symbol:gyrB_2 "DNA gyrase subunit B" s... 344 6.6e-41 2
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 352 7.5e-29 1
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 217 3.9e-23 2
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 217 3.9e-23 2
UNIPROTKB|Q8EYL9 - symbol:LA_4194 "DNA gyrase subunit B" ... 282 7.4e-23 2
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 276 2.4e-22 2
SGD|S000005032 - symbol:TOP2 "Topoisomerase II, relieves ... 282 1.2e-21 2
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 193 2.6e-19 4
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 200 4.2e-19 4
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 200 4.2e-19 4
UNIPROTKB|E1BZ19 - symbol:TOP2B "DNA topoisomerase 2" spe... 200 4.2e-19 4
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 197 9.4e-19 3
FB|FBgn0003732 - symbol:Top2 "Topoisomerase 2" species:72... 178 1.5e-18 2
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 250 1.8e-18 2
WB|WBGene00010785 - symbol:top-2 species:6239 "Caenorhabd... 184 2.3e-18 3
UNIPROTKB|Q23670 - symbol:K12D12.1 "Probable DNA topoisom... 184 2.3e-18 3
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 197 2.4e-18 3
UNIPROTKB|F1PRA7 - symbol:TOP2B "DNA topoisomerase 2" spe... 197 2.7e-18 4
UNIPROTKB|F1RS45 - symbol:TOP2B "DNA topoisomerase 2" spe... 197 2.8e-18 4
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 195 3.0e-18 4
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 197 3.1e-18 3
UNIPROTKB|F1MU48 - symbol:TOP2B "DNA topoisomerase 2" spe... 197 3.4e-18 4
UNIPROTKB|Q64399 - symbol:TOP2B "DNA topoisomerase 2-beta... 197 3.5e-18 4
MGI|MGI:98791 - symbol:Top2b "topoisomerase (DNA) II beta... 197 5.6e-18 4
UNIPROTKB|P11388 - symbol:TOP2A "DNA topoisomerase 2-alph... 193 6.8e-18 3
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 197 7.2e-18 3
UNIPROTKB|F1MDU7 - symbol:TOP2A "DNA topoisomerase 2" spe... 193 8.6e-18 3
UNIPROTKB|O46374 - symbol:TOP2A "DNA topoisomerase 2-alph... 193 8.6e-18 3
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 224 1.4e-17 2
UNIPROTKB|O42130 - symbol:TOP2A "DNA topoisomerase 2-alph... 193 2.1e-17 4
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 231 2.3e-17 3
UNIPROTKB|J9PAY8 - symbol:TOP2A "DNA topoisomerase 2" spe... 231 2.3e-17 3
UNIPROTKB|Q02880 - symbol:TOP2B "DNA topoisomerase 2-beta... 197 2.5e-17 3
UNIPROTKB|F1NZF0 - symbol:TOP2A "DNA topoisomerase 2" spe... 192 2.7e-17 4
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 205 3.1e-17 2
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 177 1.9e-16 3
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 168 2.4e-16 3
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 168 2.4e-16 3
DICTYBASE|DDB_G0270418 - symbol:top2 "DNA topoisomerase I... 217 2.8e-16 2
ZFIN|ZDB-GENE-030131-2453 - symbol:top2a "topoisomerase (... 189 6.1e-16 4
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 197 1.8e-15 3
TAIR|locus:2076201 - symbol:TOPII "AT3G23890" species:370... 239 2.1e-15 2
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 197 2.2e-15 3
UNIPROTKB|F1P2F2 - symbol:TOP2A "DNA topoisomerase 2" spe... 192 3.0e-15 4
CGD|CAL0005199 - symbol:TOP2 species:5476 "Candida albica... 214 1.5e-14 2
UNIPROTKB|Q5A1E7 - symbol:TOP2 "DNA topoisomerase 2" spec... 214 1.5e-14 2
WB|WBGene00022854 - symbol:cin-4 species:6239 "Caenorhabd... 155 1.8e-07 1
UNIPROTKB|G5ECQ8 - symbol:cin-4 "Chromosome instability 4... 155 1.8e-07 1
>TAIR|locus:2146698 [details] [associations]
symbol:GYRB2 "DNA GYRASE B2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AL391716
GO:GO:0009330 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
EMBL:AY039521 EMBL:AY142041 IPI:IPI00527008 IPI:IPI00537479
RefSeq:NP_568133.1 RefSeq:NP_850762.1 UniGene:At.10083
ProteinModelPortal:Q94BZ7 SMR:Q94BZ7 STRING:Q94BZ7 PaxDb:Q94BZ7
PRIDE:Q94BZ7 EnsemblPlants:AT5G04130.1 GeneID:830291
KEGG:ath:AT5G04130 GeneFarm:4066 TAIR:At5g04130 eggNOG:COG0187
HOGENOM:HOG000075155 InParanoid:Q94BZ7 KO:K02470 OMA:IGKNEYN
PhylomeDB:Q94BZ7 ProtClustDB:CLSN2689450 Genevestigator:Q94BZ7
GermOnline:AT5G04130 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 Uniprot:Q94BZ7
Length = 732
Score = 2256 (799.2 bits), Expect = 6.4e-234, P = 6.4e-234
Identities = 439/585 (75%), Positives = 481/585 (82%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R F + V SQ L + N + R FLS TEA +E SK Y SEQIQVLEGL+ VRK
Sbjct: 53 RLKFQLTSVLSQRLIQRNAISSR-FLS----TEASQETTTSKGYSSEQIQVLEGLDPVRK 107
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153
RP MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD SVSV DNGRGIP DL
Sbjct: 108 RPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDL 167
Query: 154 HPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGME 213
HPAT KS+LETVLTVLHA NALSE+LEV+VWRDGME
Sbjct: 168 HPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGME 227
Query: 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 273
+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAF
Sbjct: 228 HKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAF 287
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
LNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D
Sbjct: 288 LNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVD 347
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSG
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 453
EHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467
Query: 454 XXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 513
VR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSA
Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527
Query: 514 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 573
KQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHK
Sbjct: 528 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 587
Query: 574 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
IIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KV
Sbjct: 588 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKV 632
>UNIPROTKB|Q5NBJ3 [details] [associations]
symbol:GYRB "DNA gyrase subunit B,
chloroplastic/mitochondrial" species:39947 "Oryza sativa Japonica
Group" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524 GO:GO:0009507
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF EMBL:AP001073 EMBL:AP000969
EMBL:AK102391 RefSeq:NP_001042691.1 UniGene:Os.37563
ProteinModelPortal:Q5NBJ3 STRING:Q5NBJ3 PRIDE:Q5NBJ3 GeneID:4326261
KEGG:dosa:Os01t0268300-01 KEGG:osa:4326261 Gramene:Q5NBJ3
Uniprot:Q5NBJ3
Length = 729
Score = 2103 (745.4 bits), Expect = 1.0e-217, P = 1.0e-217
Identities = 406/585 (69%), Positives = 464/585 (79%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R A+ ++ R N V RAF++S+ A+EA +E V+ Y + +QVLE L+ VR
Sbjct: 46 RPRVAVAAAAAGAPLRRNGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRT 105
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153
RP MYIGSTG RGLHHLVYEILDNAVDEAQAGYA+ ++V L DNSVSV DNGRGIP D+
Sbjct: 106 RPGMYIGSTGSRGLHHLVYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDI 165
Query: 154 HPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGME 213
HP T KS +ETVLT++HA NALSE+LEVTVWRDG E
Sbjct: 166 HPQTKKSCVETVLTLMHAGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKE 225
Query: 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 273
Y Q YSRGK +T LT L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAF
Sbjct: 226 YRQNYSRGKAITMLTSRTLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAF 285
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
LNP+LTIAL KE+ D + Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D
Sbjct: 286 LNPELTIALTKEEDDLQV-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVD 344
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
++LQWCSD+YSDT+LGYANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSG
Sbjct: 345 VSLQWCSDSYSDTVLGYANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSG 404
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 453
EHVREG+TCII+V+VPNPEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDV
Sbjct: 405 EHVREGMTCIIAVKVPNPEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSIL 464
Query: 454 XXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 513
VR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSA
Sbjct: 465 SKSLNALKAALAAKRARELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSA 524
Query: 514 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 573
KQGRDR+FQAILPLRGKILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYHK
Sbjct: 525 KQGRDRKFQAILPLRGKILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHK 584
Query: 574 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
I+ILTDADVDGAHIRTLLLTFF+RYQK LFDEGCIYVGVPPLYKV
Sbjct: 585 IVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKV 629
>UNIPROTKB|Q7NHM9 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P06982 RefSeq:NP_925452.1
ProteinModelPortal:Q7NHM9 GeneID:2600907 KEGG:gvi:gvip344
PATRIC:22044491 BioCyc:GVIO251221:GH9A-2555-MONOMER Uniprot:Q7NHM9
Length = 644
Score = 1554 (552.1 bits), Expect = 1.6e-159, P = 1.6e-159
Identities = 304/547 (55%), Positives = 383/547 (70%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++TYG+EQIQVLEGLE VRKRP MYIGSTGPRGLHHLVYEI+DN+VDEA AG+ +I +
Sbjct: 1 MTETYGAEQIQVLEGLEHVRKRPGMYIGSTGPRGLHHLVYEIVDNSVDEALAGHCKHIAI 60
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
+L AD S ++ D+GRGIP D HP T KS +ETVLTVL A
Sbjct: 61 SLGADGSATITDDGRGIPTDTHPRTGKSTIETVLTVLGAGGKFGGGGYKVSGGLHGVGAA 120
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS L T+WR+G +Y Q++ RG P L + DS+ R+GT I F PD ++
Sbjct: 121 VV--NALSTILTATIWREGKQYIQRFHRGIPEGGLA---VSSDSQKRRGTMISFLPDPEI 175
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
FTT + FD +T+ R RELAFLN + R D E + Y + GG+ EYV+++
Sbjct: 176 FTTGVDFDFDTLLSRFRELAFLNAG--VEFRFSDLRGETERTESYIYEGGIREYVKYMTR 233
Query: 313 DKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 371
+K LH D++ ++ DG++++ ALQW +D Y+D +LG+AN+IRTIDGGTH+EG+KA LT
Sbjct: 234 EKAALHPDIIFINQERDGVSVECALQWSTDVYNDNVLGFANNIRTIDGGTHLEGLKAVLT 293
Query: 372 RTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVD 431
RT NS +K+ +KD D +L+GEHVREGLT ++SV+VPNPEFEGQTKT+LGNPEVR +VD
Sbjct: 294 RTFNSFARKANKLKDGDKNLTGEHVREGLTAVLSVKVPNPEFEGQTKTKLGNPEVRGIVD 353
Query: 432 QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC 491
+ E LTEYLE HPDV VR+KS L SS+LPGKLADC
Sbjct: 354 GVISEKLTEYLEFHPDVVASILEKALQSMQAEEAARKARDLVRRKSALESSTLPGKLADC 413
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551
S P ESE+F+VEGDSAGGSAKQGRDRRFQAILPLRGKILN+ER D+ +Y N EIQ +
Sbjct: 414 QSRDPAESEVFLVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERADDRKIYGNNEIQAM 473
Query: 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 611
I LGLG+K E+F LRYH+III+TDADVDGAHIRTLLLTFFYRY++ L ++G IY+
Sbjct: 474 ITGLGLGLKTEEFDVGRLRYHRIIIMTDADVDGAHIRTLLLTFFYRYKRDLVEQGYIYIA 533
Query: 612 VPPLYKV 618
PPLYK+
Sbjct: 534 QPPLYKI 540
>UNIPROTKB|A8IIG8 [details] [associations]
symbol:TOP3 "DNA gyrase subunit B-like protein"
species:3055 "Chlamydomonas reinhardtii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
ProtClustDB:CLSN2689450 Gene3D:3.40.50.670 EMBL:DS496117
RefSeq:XP_001690535.1 UniGene:Cre.5744 ProteinModelPortal:A8IIG8
STRING:A8IIG8 EnsemblPlants:EDP05794 GeneID:5716144
KEGG:cre:CHLREDRAFT_114600 BioCyc:CHLAMY:CHLREDRAFT_114600-MONOMER
Uniprot:A8IIG8
Length = 649
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 292/549 (53%), Positives = 366/549 (66%)
Query: 83 QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL-LADNSVS 141
QVLEGLE VRKRP MYIG TG GLHHL++E++DNAVDE QAG+AS +EV + L+ VS
Sbjct: 1 QVLEGLEPVRKRPGMYIGGTGSDGLHHLIWEVVDNAVDEVQAGHASAVEVDVDLSSGWVS 60
Query: 142 VADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSE 201
V DNGRGIP+D+HP T KSALETVLTVLHA NALS
Sbjct: 61 VVDNGRGIPVDVHPVTGKSALETVLTVLHAGGKFGGDNSGYKVSGGLHGVGISVVNALSS 120
Query: 202 SLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKD--RQGTRIRFWPDKQVFTTAIQF 259
LEVTVWR G Y Q+YSRG P+ L +LP S++ R GT++RF D +F + +
Sbjct: 121 ELEVTVWRAGSRYSQRYSRGAPLEELRVQLLPPGSEEAGRSGTQVRFLYDASIFAKDVAY 180
Query: 260 DHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD 319
+ IA R+ ELAFLN + TI R + Q+ + ++GGL E+V L PLH+
Sbjct: 181 SADVIATRLHELAFLNARATIRFRALRRGKPEGQWQVFQYSGGLREFVGCLQAAYTPLHE 240
Query: 320 -VVGFRKDV-DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL 377
+V R D G+ ++ ALQW +D++ + + G+ANSI T+DGGTH+EG++A LTR + L
Sbjct: 241 ALVVTRADGGSGVVVEAALQWAADSFKEEVRGFANSIHTVDGGTHMEGLRAGLTRAVTQL 300
Query: 378 GKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEY 437
G+K+K +KD D LSGEHVREGL ++SV+VPNPEFEGQTKTRLGNPEVRK+V+ +V E
Sbjct: 301 GRKAKQIKDSDPPLSGEHVREGLGAVVSVKVPNPEFEGQTKTRLGNPEVRKIVENAVYEA 360
Query: 438 LTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRS--SSLPGKLADCSSTT 495
+ E+LE HP VR+K+ L + S+LPGKLADC+ST
Sbjct: 361 VGEWLEAHPAALAALCAKALTSARAAEAARKARELVRRKTSLFTGRSTLPGKLADCTSTN 420
Query: 496 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEA--AMYKNEEIQNLIR 553
EE+EI+IVEGDSAGGSAKQ RDRRFQAILPL+GKILNVER +A MYKN EI NLI
Sbjct: 421 REETEIYIVEGDSAGGSAKQARDRRFQAILPLKGKILNVERLTDANELMYKNTEISNLI- 479
Query: 554 ALG----LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
ALG +GV+ + L Y KI++LTDADVDGAHIRTLLLTF +R++ LF G +Y
Sbjct: 480 ALGYERTVGVRSRCHAFKLLLYGKIVVLTDADVDGAHIRTLLLTFLFRHRPQLFAAGRVY 539
Query: 610 VGVPPLYKV 618
V VPPLYKV
Sbjct: 540 VAVPPLYKV 548
>TIGR_CMR|CHY_2705 [details] [associations]
symbol:CHY_2705 "DNA gyrase, B subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075156 RefSeq:YP_361487.1
ProteinModelPortal:Q3A8P7 SMR:Q3A8P7 STRING:Q3A8P7 GeneID:3726578
KEGG:chy:CHY_2705 PATRIC:21278431
BioCyc:CHYD246194:GJCN-2703-MONOMER Uniprot:Q3A8P7
Length = 635
Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
Identities = 271/542 (50%), Positives = 369/542 (68%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+E+IQVL+GLE VRKRPAMYIGST +GLHHLVYE++DN++DEA AG+ + IEV +
Sbjct: 10 YGAEEIQVLKGLEGVRKRPAMYIGSTNEKGLHHLVYEVVDNSIDEALAGFCNRIEVIIHK 69
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D S++VADNGRGIP+D+HP K A+E VLT+LHA
Sbjct: 70 DGSITVADNGRGIPVDIHPEVGKPAVEVVLTMLHAGGKFGGGGYKVSGGLHGVGVSVV-- 127
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV + RDG Y+QK+SRG+P+T L + GT I F PD ++F T
Sbjct: 128 NALSEWLEVRIKRDGNLYYQKFSRGEPITELKI----IGKSKSTGTIITFKPDAEIFET- 182
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
++F+++T+A R+ EL++LN + I L+ E + K + E+ +GG+++Y+++LN +K+P
Sbjct: 183 VEFNYDTLAKRLLELSYLNKNVKIILKDERIN--KEEIFEH--SGGIKDYLKYLNKNKEP 238
Query: 317 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 376
LH ++ F K+ D + +++ALQ+C+ ++S+ +L + N+I T +GGTH G K +LTR +N
Sbjct: 239 LHKIIYFEKEKDEVVVEVALQYCN-SFSENILSFTNNINTTEGGTHEIGFKTALTRVIND 297
Query: 377 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 436
KK +K+ ++SL GE +REGLT IISV+VP+P+FEGQTKT+L N EVR +VD V +
Sbjct: 298 YAKKYNLIKENNLSLQGEDIREGLTAIISVKVPDPQFEGQTKTKLVNTEVRSIVDSIVSD 357
Query: 437 YLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTP 496
YL+ YLE +P V R+K+ L S++LPGKLADCS P
Sbjct: 358 YLSTYLEENPAVGKKLIENAIRAARAREAARKARELARRKTALESNTLPGKLADCSEKDP 417
Query: 497 EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG 556
E+++VEGDSAGGSAKQGRDRRFQAILPLRGKILNVE+ + NEEI+ +I ALG
Sbjct: 418 SLCELYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDKILANEEIRAMITALG 477
Query: 557 LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY 616
GV +DF E RYH++II+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY
Sbjct: 478 TGVD-KDFDIEKARYHRLIIMTDADVDGAHIRTLLLTFFYRYLRPLIENGYVYIAQPPLY 536
Query: 617 KV 618
KV
Sbjct: 537 KV 538
>UNIPROTKB|P77993 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243274
"Thermotoga maritima MSB8" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE000512 GenomeReviews:AE000512_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:U49692
PIR:JC4960 RefSeq:NP_228642.1 ProteinModelPortal:P77993 SMR:P77993
DNASU:898504 GeneID:898504 KEGG:tma:TM0833 PATRIC:23936592
Uniprot:P77993
Length = 636
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 270/551 (49%), Positives = 363/551 (65%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y +E I+VL+GLE VR RP MYIGSTG RGLHHLVYE++DN+VDEA AGY I V L
Sbjct: 4 YSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHE 63
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D SV V DNGRGIP+D+HP +SALE V TVLHA
Sbjct: 64 DGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKFSKDSYKISGGLHGVGVSVV-- 121
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV V RDG Y Q+Y RGKPVT + + D+ GT +RF PD +F+
Sbjct: 122 NALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET 177
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDS-DPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+FD + + R+RE+AFL P L I ED + EK + F GG+ EYV++LN KK
Sbjct: 178 -EFDPDILEHRLREIAFLVPGLKIEF--EDRINGEKKTFK---FDGGIVEYVKYLNRGKK 231
Query: 316 PLHDVVGFRKDV--------DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 367
LHDV+ ++ D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K
Sbjct: 232 ALHDVIHIKRTEKVKTKNGEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFK 290
Query: 368 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
++LTR +N GKK +K KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV+
Sbjct: 291 STLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVK 349
Query: 428 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGK 487
+ V ++++E L + + +P++ VR+K+VL++++LPGK
Sbjct: 350 EAVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGK 409
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 547
LADCSST E++E+FIVEGDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+
Sbjct: 410 LADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQ 469
Query: 548 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 607
I ++I A+G G+ G+DF + LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G
Sbjct: 470 ISDIIVAVGTGI-GDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGR 528
Query: 608 IYVGVPPLYKV 618
+Y+ +PPLY++
Sbjct: 529 VYIALPPLYRI 539
>UNIPROTKB|P05652 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
EMBL:D26185 EMBL:X02369 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
PROSITE:PS50880 ProtClustDB:PRK05644 PIR:E22930 RefSeq:NP_387887.1
ProteinModelPortal:P05652 SMR:P05652 PRIDE:P05652
EnsemblBacteria:EBBACT00000000768 GeneID:939456 KEGG:bsu:BSU00060
PATRIC:18971459 GenoList:BSU00060 HOGENOM:HOG000075156 OMA:MDRILAN
BioCyc:BSUB:BSU00060-MONOMER BindingDB:P05652 ChEMBL:CHEMBL4324
Uniprot:P05652
Length = 638
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 257/544 (47%), Positives = 347/544 (63%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY ++I + +
Sbjct: 7 SYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIE 66
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DNS++V DNGRGIP+ +H + A+E ++TVLHA
Sbjct: 67 KDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVV- 125
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS L+VTV RDG + Q Y RG PVT L + D GT F PD ++F+
Sbjct: 126 -NALSTELDVTVHRDGKIHRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSE 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
++D++ +A R+RELAFL + I + ED + + NEY + GG++ YV++LN K+
Sbjct: 181 TTEYDYDLLANRVRELAFLTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKE 238
Query: 316 PLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
+H+ + + DGIT+++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +
Sbjct: 239 VVHEEPIYIEGEKDGITVEVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVI 297
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N +K +K+ D +LSG+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D
Sbjct: 298 NDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLF 357
Query: 435 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 494
+ ++ +PD R+KS L S+LPGKLADCSS
Sbjct: 358 STAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSK 417
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 554
P SE++IVEGDSAGGSAKQGRDR FQAILPLRGKILNVE+ + N E++++I A
Sbjct: 418 DPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 477
Query: 555 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 614
LG G+ GEDF E RYHK++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PP
Sbjct: 478 LGTGI-GEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPP 536
Query: 615 LYKV 618
LYKV
Sbjct: 537 LYKV 540
>UNIPROTKB|Q8TQG0 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:188937
"Methanosarcina acetivorans C2A" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE010299
GenomeReviews:AE010299_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:NP_616517.1 HSSP:P06982 ProteinModelPortal:Q8TQG0
GeneID:1473472 KEGG:mac:MA1584 BioCyc:MACE188937:GI2O-1646-MONOMER
Uniprot:Q8TQG0
Length = 634
Score = 1293 (460.2 bits), Expect = 7.1e-132, P = 7.1e-132
Identities = 271/545 (49%), Positives = 355/545 (65%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + +IQVLEGLEAVRKRP+MYIGST RGLHHLVYE++DN++DEA AG+ + ++V +
Sbjct: 5 QVYDASRIQVLEGLEAVRKRPSMYIGSTDSRGLHHLVYEVVDNSIDEALAGFCTRVDVTI 64
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
D SV+V DNGRGIPID HP KSALE V+TVLHA
Sbjct: 65 NPDGSVTVLDNGRGIPIDPHPVHKKSALEVVMTVLHAGGKFDKNTYKVSGGLHGVGVSVV 124
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
NALSE L V V RDG +Y Q+Y RGKP V + + GT+ F PD ++F
Sbjct: 125 --NALSEWLNVEVERDGKKYFQRYIRGKP----EAEVQETGTSEITGTKTTFKPDARIFE 178
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
T F ++ ++ R+RELAFLN LTI L K+ PE Q + ++GG+ E+V++LN K
Sbjct: 179 TT-DFQYDILSNRLRELAFLNRGLTINL-KDLRSPE-GQAETFIYSGGIVEFVEYLNKKK 235
Query: 315 KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+PLH+ + F + D + +++A+Q+ +++Y++ + +AN+I T +GGTHI G K +LTR
Sbjct: 236 QPLHEKPIYFERQRDDMVVEIAMQY-TNSYTENVYSFANNINTHEGGTHIIGFKTALTRV 294
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
N K +K K+ D L+G+ VREGLT IISV++ P+FEGQTKTRLGN EV+ +VD
Sbjct: 295 ANDYIKANKLSKE-DAKLTGDDVREGLTAIISVKLMEPQFEGQTKTRLGNSEVKGIVDSL 353
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 493
V + L EY E +P V R+KS L S+LPGKLADCS
Sbjct: 354 VTDGLAEYFEENPKVANVILEKALLAQKAREAAKKARELTRRKSALEVSTLPGKLADCSE 413
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
P EI+IVEG+SAGGSAKQGRDR FQAILPLRGKILNVE+ A + KN E+ +LI
Sbjct: 414 KDPSVCEIYIVEGNSAGGSAKQGRDRGFQAILPLRGKILNVEKSRLAKILKNNEVVSLIT 473
Query: 554 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613
ALG GV EDF E+ RYHK+I++TDADVDGAHIRTLLLT F+RY + L D G +Y+ P
Sbjct: 474 ALGTGVS-EDFALESARYHKVILMTDADVDGAHIRTLLLTLFFRYMRPLIDAGYVYIAQP 532
Query: 614 PLYKV 618
PLY++
Sbjct: 533 PLYRI 537
>TIGR_CMR|BA_0005 [details] [associations]
symbol:BA_0005 "DNA gyrase, B subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF EMBL:AF090333
RefSeq:NP_842577.1 RefSeq:YP_016608.1 RefSeq:YP_026296.1
ProteinModelPortal:Q9X3Y6 PRIDE:Q9X3Y6 DNASU:1083919
EnsemblBacteria:EBBACT00000010328 EnsemblBacteria:EBBACT00000015641
EnsemblBacteria:EBBACT00000021045 GeneID:1083919 GeneID:2816408
GeneID:2848886 KEGG:ban:BA_0005 KEGG:bar:GBAA_0005 KEGG:bat:BAS0005
ProtClustDB:PRK05644 BioCyc:BANT260799:GJAJ-5-MONOMER
BioCyc:BANT261594:GJ7F-5-MONOMER Uniprot:Q9X3Y6
Length = 640
Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
Identities = 261/546 (47%), Positives = 347/546 (63%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY I V++
Sbjct: 10 SYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIE 69
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DNS+ V DNGRGIP+ + + A+E ++TVLHA
Sbjct: 70 EDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV- 128
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF-- 253
NALS LEV V R+G ++QKY RG PV L + D+ GT RF PD ++F
Sbjct: 129 -NALSTELEVFVHREGKIHYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQE 183
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
TT +FD T+A R+RELAFLN + + + ED K Q E+ + GG++ YV+ LN
Sbjct: 184 TTVYEFD--TLATRMRELAFLNRNIKLTI--EDKREHK-QKKEFHYEGGIKSYVEHLNRS 238
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+H+ V DGI ++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR
Sbjct: 239 KQPIHEEPVYVEGSKDGIQVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTR 297
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+N G+K+ +KD D +L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + +
Sbjct: 298 VINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 357
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
E ++L +P+V R+KS L SSLPGKLADCS
Sbjct: 358 VFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 417
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S P SEI+IVEGDSAGGSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I
Sbjct: 418 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 477
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A+G + G DF E RYHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+
Sbjct: 478 TAIGTNIGG-DFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 536
Query: 613 PPLYKV 618
PPL+KV
Sbjct: 537 PPLFKV 542
>UNIPROTKB|O67137 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 PIR:F70388
RefSeq:NP_213700.1 ProteinModelPortal:O67137 SMR:O67137
PRIDE:O67137 GeneID:1193771 KEGG:aae:aq_1026 PATRIC:20959360
OMA:IFETTEF ProtClustDB:PRK14939 BioCyc:AAEO224324:GJBH-733-MONOMER
Uniprot:O67137
Length = 792
Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
Identities = 255/552 (46%), Positives = 353/552 (63%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
+++ + Y +E I+ + GLE VR RPAMYIG G RGLHHL++EILDNAVDEA AGYA
Sbjct: 4 RQSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGYAR 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXX 188
NI V + DNSV+V D+GRGIP+D+HP T K A+E V T+L A
Sbjct: 64 NISVTIHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHG 123
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALSE L V V+RDG Y + RG+ V L HV+ ++K R GT++ F P
Sbjct: 124 VGASVV--NALSEWLIVEVYRDGKIYRMAFKRGEVVEPL--HVVG-ETKKR-GTKVSFKP 177
Query: 249 DKQVF-TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 307
D ++F TT I+FD + R+RELA+LNP++ L +D ++ Y F G+EE V
Sbjct: 178 DPEIFETTEIKFD--IVEKRVRELAYLNPEVKFEL----TDERLGKHLIYKFDRGIEELV 231
Query: 308 QWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
++LN K+PL D++ + + +G+ +D+A Q+ D Y + + + N+I+T++GGTH+ G
Sbjct: 232 KYLNEGKEPLFKDIIRIQGEKEGVIVDIAFQYVKD-YKERIESFVNNIKTVEGGTHVTGF 290
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
++ L++ + + + K K+ S +GE VREGLT +++ +VPNP+FEGQTKT+LGN V
Sbjct: 291 RSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNV 350
Query: 427 RKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG 486
+++V+ ++LT Y E DV VR+KS L LPG
Sbjct: 351 KQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPG 410
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 546
KLADCS T P + EIF+VEGDSAGGSAKQ RDRR+QAILPLRGKI+NVE+ + N+
Sbjct: 411 KLADCSETDPSKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSND 470
Query: 547 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 606
EI+ ++ ALG G+ GED + LRYHKII++TDADVDG+HIRTLLLTFFYR+ L +EG
Sbjct: 471 EIKAIVSALGCGI-GEDLDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEG 529
Query: 607 CIYVGVPPLYKV 618
+Y+ PPLY+V
Sbjct: 530 YVYIAEPPLYRV 541
>UNIPROTKB|Q74H89 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_951065.1
ProteinModelPortal:Q74H89 SMR:Q74H89 GeneID:2686080
KEGG:gsu:GSU0003 PATRIC:22022743 BioCyc:GSUL243231:GH27-3-MONOMER
Uniprot:Q74H89
Length = 795
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 248/543 (45%), Positives = 350/543 (64%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+++I+VLEGLEAVRKRPAMYIGST +GLHHLVYEI+DN++DEA AGY + + V +
Sbjct: 9 YGADKIKVLEGLEAVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGYCNEVNVTIHL 68
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D S++V DNGRGIP D+HP K A E LTVLHA
Sbjct: 69 DGSLTVVDNGRGIPTDIHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVV-- 126
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LE+ + RDG Y Q Y+ G P T L V+ ++K R GT+I F PD +F T
Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT 182
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+F + ++ R+RELAFLN + I + E E+ +++++ + GG+ +V++LN ++
Sbjct: 183 -EFSFDVLSQRLRELAFLNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTA 238
Query: 317 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LH + F+ + G+ +++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N
Sbjct: 239 LHPKPIYFKGEKAGVEMEVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMN 297
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 435
+ ++ +K + +++SGE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ +
Sbjct: 298 TYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMN 357
Query: 436 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 495
E L +LE +P + R+K L S+LPGKLADC
Sbjct: 358 EKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERD 417
Query: 496 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 555
P E+++VEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ M ++EI LI AL
Sbjct: 418 PALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITAL 477
Query: 556 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 615
G G+ +DF LRYH+II++TDADVDG+HI TLLLTFF+R + + G +Y+ PPL
Sbjct: 478 GTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPL 537
Query: 616 YKV 618
YKV
Sbjct: 538 YKV 540
>TIGR_CMR|DET_0004 [details] [associations]
symbol:DET_0004 "DNA gyrase, B subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644
RefSeq:YP_180759.1 ProteinModelPortal:Q3ZAJ0 STRING:Q3ZAJ0
GeneID:3229139 KEGG:det:DET0004 PATRIC:21607113
BioCyc:DETH243164:GJNF-4-MONOMER Uniprot:Q3ZAJ0
Length = 642
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 257/546 (47%), Positives = 339/546 (62%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
++ Y + IQVLEGL AVRKRP MYIGST RGLHHLVYEI+ N+VDEA AG I+V
Sbjct: 13 AENYNASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLVYEIVYNSVDEAMAGVCDRIKVI 72
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXX 193
+ D SVSV DNGRGIPID+HP T SALETV+TVLHA
Sbjct: 73 IYKDGSVSVEDNGRGIPIDIHPVTKISALETVMTVLHAGAKFGGKTYQVSGGLHGVGASV 132
Query: 194 XXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
NAL+E V V R+G Y Q Y RGKP T L V D GT F D Q+F
Sbjct: 133 V--NALAEWTTVKVRRNGKIYQQSYQRGKPSTPLE----EVGVSDGSGTTTIFKADSQIF 186
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
+T ++D T+ R+RE+A+LN L + + E SD E+ Y+F GG+ +V+ LN +
Sbjct: 187 STT-EYDFETLTDRLREIAYLNKGLEVYIYDEQSDQERT----YYFEGGITGFVRHLNRN 241
Query: 314 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
++ H + K D +++A+Q+ +D YSD+ L +AN + TIDGGTH+ G +++LTR
Sbjct: 242 REVRHRQPIYITKKSDSTILEVAIQY-NDGYSDSTLTFANCVNTIDGGTHLTGFRSALTR 300
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
N KSK +KD D +L G+ VREG+ I+SV++P P+FEGQTK +LGN E++ V+
Sbjct: 301 AFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLGNIEIKSFVES 360
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
+V E L+ YLE HPD + +KS L + +LPGKLADCS
Sbjct: 361 AVTEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDLIIRKSALDTGTLPGKLADCS 420
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
E+F+VEGDSAGGSAKQGR+RRFQAILPLRGKILNVE+ M +EEI+ +I
Sbjct: 421 ERDASLCELFLVEGDSAGGSAKQGRNRRFQAILPLRGKILNVEKASPDKMLAHEEIRAII 480
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
AL G+ DF LRY++++++TDADVDG+HIRTLLLTFF+R+ L E +++
Sbjct: 481 TALAAGIDN-DFDPAKLRYNRLVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQ 539
Query: 613 PPLYKV 618
PPLYK+
Sbjct: 540 PPLYKI 545
>TIGR_CMR|GSU_0003 [details] [associations]
symbol:GSU_0003 "DNA gyrase, B subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_951065.1 ProteinModelPortal:Q74H89 SMR:Q74H89
GeneID:2686080 KEGG:gsu:GSU0003 PATRIC:22022743
BioCyc:GSUL243231:GH27-3-MONOMER Uniprot:Q74H89
Length = 795
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 248/543 (45%), Positives = 350/543 (64%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+++I+VLEGLEAVRKRPAMYIGST +GLHHLVYEI+DN++DEA AGY + + V +
Sbjct: 9 YGADKIKVLEGLEAVRKRPAMYIGSTAAQGLHHLVYEIVDNSIDEALAGYCNEVNVTIHL 68
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D S++V DNGRGIP D+HP K A E LTVLHA
Sbjct: 69 DGSLTVVDNGRGIPTDIHPTEGKPAAEVALTVLHAGGKFDNTSYKVSGGLHGVGVSVV-- 126
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LE+ + RDG Y Q Y+ G P T L V+ ++K R GT+I F PD +F T
Sbjct: 127 NALSRKLELEIRRDGKVYRQSYACGDPQTPL--EVMG-ETKKR-GTKITFLPDDTIFETT 182
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+F + ++ R+RELAFLN + I + E E+ +++++ + GG+ +V++LN ++
Sbjct: 183 -EFSFDVLSQRLRELAFLNAGVRITITDER---EEGKHHDFHYEGGIVSFVEYLNRNRTA 238
Query: 317 LHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LH + F+ + G+ +++ALQ+ +D+Y + + +AN+I T +GGTH+ G +A+LTRT+N
Sbjct: 239 LHPKPIYFKGEKAGVEMEVALQY-NDSYDEKVFSFANNINTHEGGTHLVGFRAALTRTMN 297
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ 435
+ ++ +K + +++SGE +REGLT +ISV++P P+FEGQTKT+LGN EV+ V+ +
Sbjct: 298 TYAAANELLKKEKVAISGEDLREGLTAVISVKIPQPQFEGQTKTKLGNSEVKGYVESLMN 357
Query: 436 EYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTT 495
E L +LE +P + R+K L S+LPGKLADC
Sbjct: 358 EKLAVFLEENPKIAKDIIGKSIEAARAREAARKARELTRRKGALDISNLPGKLADCQERD 417
Query: 496 PEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 555
P E+++VEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ M ++EI LI AL
Sbjct: 418 PALCELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGTLITAL 477
Query: 556 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 615
G G+ +DF LRYH+II++TDADVDG+HI TLLLTFF+R + + G +Y+ PPL
Sbjct: 478 GTGIGKDDFDIAKLRYHRIIVMTDADVDGSHILTLLLTFFFRQMPEVVERGHLYIAQPPL 537
Query: 616 YKV 618
YKV
Sbjct: 538 YKV 540
>UNIPROTKB|Q8A277 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982
RefSeq:NP_812341.1 ProteinModelPortal:Q8A277 GeneID:1074051
KEGG:bth:BT_3429 PATRIC:21061865
BioCyc:BTHE226186:GJXV-3494-MONOMER Uniprot:Q8A277
Length = 653
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 254/556 (45%), Positives = 350/556 (62%)
Query: 72 PVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIE 131
P + +Y ++ IQVLEGLEAVRKRPAMYIG +GLHHLVYEI+DN++DEA AGY +IE
Sbjct: 8 PNNGSYSADSIQVLEGLEAVRKRPAMYIGDISIKGLHHLVYEIVDNSIDEALAGYCDHIE 67
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + DNS++V DNGRGIP+D H KSALE +TVLHA
Sbjct: 68 VTINEDNSITVQDNGRGIPVDYHEKEKKSALEVAMTVLHAGGKFDKGSYKVSGGLHGVGM 127
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALS + V+R+G Y Q+Y GKP+ + V V D GTR +FWPD
Sbjct: 128 SCV--NALSTHMTTQVFRNGKIYQQEYEIGKPLYS----VKEVGVSDITGTRQQFWPDDT 181
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIAL--RKEDSDPEKNQYNEYFFAG-GLEEYVQ 308
+FT + +D+ +A R+RELA+LN L I+L R+ ++ + + +E F++ GL E+V+
Sbjct: 182 IFTETV-YDYKILASRLRELAYLNAGLRISLTDRRVVNEEDGSFKSEVFYSEEGLREFVR 240
Query: 309 WLNTDKKPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 367
++ + ++ L +DV+ + GI I++A+ + + +S+ + Y N+I TI+GGTH+ G +
Sbjct: 241 FIESSREHLINDVIYLNSEKQGIPIEIAIMY-NTGFSENVHSYVNNINTIEGGTHLAGFR 299
Query: 368 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
+LTRTL + SK ++ + +SG+ REGLT +ISV+V P+FEGQTKT+LGN EV
Sbjct: 300 RALTRTLKKYAEDSKMLEKVKVEISGDDFREGLTAVISVKVAEPQFEGQTKTKLGNNEVM 359
Query: 428 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGK 487
VDQ+V E L YLE HP V++KS + LPGK
Sbjct: 360 GAVDQAVGEVLAYYLEEHPKEAKTIVDKVILAATARHAARKAREMVQRKSPMSGGGLPGK 419
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 547
LADCS P + E+F+VEGDSAGG+AKQGR+R FQAILPLRGKILNVE+ +++E
Sbjct: 420 LADCSDKDPSKCELFLVEGDSAGGTAKQGRNRMFQAILPLRGKILNVEKAMYHKALESDE 479
Query: 548 IQNLIRALGLGVKGEDFKKEA----LRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLF 603
I+N+ ALG+ + ED KEA LRYHKIII+TDADVDG+HI TL++TFF+RY +
Sbjct: 480 IRNIYTALGVTIGTEDDSKEANIEKLRYHKIIIMTDADVDGSHIDTLIMTFFFRYMPQII 539
Query: 604 DEGCIYVGVPPLYKVC 619
G +Y+ PPLY +C
Sbjct: 540 QNGYLYIATPPLY-LC 554
>UNIPROTKB|Q8FA30 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK05644 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P06982 RefSeq:NP_710186.1
ProteinModelPortal:Q8FA30 GeneID:1149348 KEGG:lil:LA_0005
PATRIC:22380849 BioCyc:LINT189518:GJBB-5-MONOMER Uniprot:Q8FA30
Length = 639
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 240/544 (44%), Positives = 343/544 (63%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y + QI++LEGLEAVRKRP MYIG+ GLH +VYE++DN+VDEA AG+ + I++++L
Sbjct: 7 SYSAGQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIKISIL 66
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DN V V DNGRGIP+D+HP S +E V+T+LHA
Sbjct: 67 PDNIVEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVV- 125
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE LEV V + G Y QKY +G PV+++ + DS +R GT +RF PD +FTT
Sbjct: 126 -NALSEYLEVEVHQKGKVYTQKYEKGVPVSSVQ---IQGDSSER-GTIVRFKPDATIFTT 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+ F + ++ R RELAFLN L + + E NE+ F+GG+ +V+ +N +K
Sbjct: 181 -VDFQFDVLSARFRELAFLNKGLVLVVEDHRRGKENILRNEFQFSGGIVSFVEHINENKH 239
Query: 316 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
P+H V+ F ++ D + ++++Q+ S+ Y++ + + N+I GGTH+EG +A+LTRTLN
Sbjct: 240 PMHKVIHFERNKDDVLAEISIQY-SETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLN 298
Query: 376 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
KK T+ K LSGE V+EGLT +IS+++P P+F QTK +L N E++ ++
Sbjct: 299 DFLKKDSTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLS 358
Query: 435 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 494
E LT + E +P++ R+K+VL LPGKLADCS
Sbjct: 359 SEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEK 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 554
P SE+++VEGDSAGGSAKQGRDR QAILPL+GKILNVE+ + +EEI+ L+ A
Sbjct: 419 DPAHSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRVLVSA 478
Query: 555 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 614
LG G+ ++F + +RYHKI+I+TDAD+DG+HIRTLLLTFF+RY + + + G +YV PP
Sbjct: 479 LGTGIGEDEFNIDKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIERGYLYVAQPP 538
Query: 615 LYKV 618
LY +
Sbjct: 539 LYLI 542
>TIGR_CMR|CJE_0003 [details] [associations]
symbol:CJE_0003 "DNA gyrase, B subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_178032.1 ProteinModelPortal:Q5HXF3 STRING:Q5HXF3
GeneID:3230659 KEGG:cjr:CJE0003 PATRIC:20041695
BioCyc:CJEJ195099:GJC0-3-MONOMER Uniprot:Q5HXF3
Length = 769
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 246/544 (45%), Positives = 338/544 (62%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+ + YG+ I+VL+GLEAVRKRP MYIG T GLHH++YE++DN++DEA AG+ I+V
Sbjct: 1 MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDV 60
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
+ + S V+DNGRGIP+D+HP N L VLTVLHA
Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDTYKVSGGLHGVGVS 120
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ L TV R+G Y Q++S GK ++ + + GT I FWPD Q+
Sbjct: 121 VV--NALSKKLVATVERNGEIYRQEFSEGKVISEFGV----IGKSKKTGTTIEFWPDDQI 174
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F +FD+ +A R RELA+LNPK+TI + D ++ + F GG+ ++V LN
Sbjct: 175 FEVT-EFDYEILAKRFRELAYLNPKITINFK----DNRVGKHESFHFEGGISQFVIDLNK 229
Query: 313 DKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+ L + F D + + +++AL + +D YS+ +L + N+I+T DGGTH G + LTR
Sbjct: 230 -KEALTKAIFFSVDEEDVNVEVALLY-NDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+++ + + + ++KD ++GE VREGL ++SV+VP P+FEGQTK +LG+ VR +V +
Sbjct: 288 VISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
+ EYLT+Y E +P R+K L +LPGKLADC
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKVLMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S P ESEI++VEGDSAGGSAKQGR+R FQAILPLRGKILNVE+ + K+E+IQN+I
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ GEDF LRYHKIII+TDADVDG+HI+TLLLTFF+R+ L G IY+
Sbjct: 468 TAFGCGI-GEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQ 526
Query: 613 PPLY 616
PPLY
Sbjct: 527 PPLY 530
>UNIPROTKB|Q3KMH2 [details] [associations]
symbol:gyrB_1 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_327998.1 ProteinModelPortal:Q3KMH2
STRING:Q3KMH2 GeneID:3687234 KEGG:cta:CTA_0208 PATRIC:32022282
BioCyc:CTRA315277:GI4C-250-MONOMER Uniprot:Q3KMH2
Length = 804
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 254/556 (45%), Positives = 343/556 (61%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AG+ + + V +
Sbjct: 6 KKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRI 65
Query: 135 LADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAXXXXXXXXXXXXXXXXX 188
L D +S++DNGRGIPI +H + SALE VLTVLHA
Sbjct: 66 LEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDSYKVSGGLHG 125
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALSE V++DG Y ++SRG P+TTL VL D++GT + F+P
Sbjct: 126 VGVSCV--NALSEKFIAKVFKDGQAYSMEFSRGAPLTTL--QVL--GPTDKRGTEVLFYP 179
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
D +F+T + FD + R+RELAFLN +TI ++D D ++ +F+ GG++ +V
Sbjct: 180 DPAIFSTCV-FDRAILMKRLRELAFLNRGVTIVF-EDDRDTGFDKV-VFFYEGGIQSFVS 236
Query: 309 WLNTDKK-----PLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362
+LN +K+ P++ + G R DG I + ALQW S YS+ + YAN+I T GGTH
Sbjct: 237 YLNQNKEILFPNPIY-MQGSRPGDDGDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTH 294
Query: 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG 422
+ G +LTR +NS K K +SL+GE ++EGL I+SV+VPNP+FEGQTK +LG
Sbjct: 295 LTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLG 354
Query: 423 NPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSS 482
N +V V Q E LT + E +P + +KS L S+
Sbjct: 355 NSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSA 414
Query: 483 SLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAM 542
LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQAILP+RGKILNVE+ +
Sbjct: 415 RLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKV 474
Query: 543 YKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTL 602
++N+EI ++I ALG G+ ++F LRY +III+TDADVDG+HIRTLLLTFFYR+ L
Sbjct: 475 FQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSAL 534
Query: 603 FDEGCIYVGVPPLYKV 618
+ C+Y+ PPLY+V
Sbjct: 535 IENECVYIAQPPLYRV 550
>UNIPROTKB|O08399 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE000520
GenomeReviews:AE000520_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
EMBL:U78094 PIR:H71254 RefSeq:NP_219443.1 ProteinModelPortal:O08399
IntAct:O08399 GeneID:2610807 KEGG:tpa:TP1006 PATRIC:20532137
Uniprot:O08399
Length = 637
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 259/556 (46%), Positives = 341/556 (61%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + I VLEGLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AGY I V L
Sbjct: 5 YSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQ 64
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
N V V DNGRGIP+D+HP SALE VLT LHA
Sbjct: 65 GNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKSYKVSGGLHGVGVSVV-- 122
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVF 253
NALS +EVTV+RDG EY+QK++ G P+ PV+ + +++GT IR+ D +F
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIF 175
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
+ +D + + R+RELAFLN + I LR E K E+ F GG+ +V +LN
Sbjct: 176 KETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRG 233
Query: 314 K-----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
K +PL+ + G + DV +++ALQ+ D Y++ + + N I T +GGTH+EG K+
Sbjct: 234 KSVVPERPLY-IEGSKSDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKS 288
Query: 369 SLTRTLNSLGKKS-KTVK--DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 425
+LTR N KKS K K +++ L GE VR GLT ++SV++P P+FEGQTKT+LGN E
Sbjct: 289 ALTRVANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSE 348
Query: 426 VRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLP 485
VR +VD V E LT Y E +P V R+KS + S LP
Sbjct: 349 VRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLP 408
Query: 486 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 545
GKLADCS P + E++IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + N
Sbjct: 409 GKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHN 468
Query: 546 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 605
E++Q +I LG GV G+DF +RYHK+II+ DADVDG+HIRTLLLTFF+RY + +
Sbjct: 469 EKLQPIIATLGTGV-GKDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEA 527
Query: 606 GCIYVGVPPLYKVCFW 621
G +Y+ +PPLY++ W
Sbjct: 528 GYVYLAMPPLYRIA-W 542
>UNIPROTKB|P0C5C5 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0046982 "protein heterodimerization activity" evidence=IPI]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0040007 GO:GO:0005618 GO:GO:0005694 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0000287
EMBL:BX842572 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27512 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK05644 PIR:S44198 RefSeq:NP_214519.1
RefSeq:NP_334414.1 RefSeq:YP_006513317.1 PDB:2ZJT PDB:3IG0 PDB:3M4I
PDBsum:2ZJT PDBsum:3IG0 PDBsum:3M4I ProteinModelPortal:P0C5C5
SMR:P0C5C5 PRIDE:P0C5C5 EnsemblBacteria:EBMYCT00000001058
EnsemblBacteria:EBMYCT00000070955 GeneID:13315978 GeneID:887081
GeneID:922435 KEGG:mtc:MT0005 KEGG:mtu:Rv0005 KEGG:mtv:RVBD_0005
PATRIC:18121734 TubercuList:Rv0005 HOGENOM:HOG000075154
BindingDB:P0C5C5 ChEMBL:CHEMBL3489 EvolutionaryTrace:P0C5C5
Uniprot:P0C5C5
Length = 675
Score = 750 (269.1 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 151/344 (43%), Positives = 211/344 (61%)
Query: 276 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDL 334
PK E + P K + + + GGL ++V+ +N K +H +V F G +++
Sbjct: 230 PKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEI 289
Query: 335 ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 394
A+QW + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+
Sbjct: 290 AMQW-NAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGD 348
Query: 395 HVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXX 454
+REGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P
Sbjct: 349 DIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVN 408
Query: 455 XXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAK 514
VR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK
Sbjct: 409 KAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAK 468
Query: 515 QGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKI 574
GRD FQAILPLRGKI+NVE+ + KN E+Q +I ALG G+ E F LRYHKI
Sbjct: 469 SGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDIGKLRYHKI 527
Query: 575 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
+++ DADVDG HI TLLLT +R+ + L + G +++ PPLYK+
Sbjct: 528 VLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKL 571
Score = 436 (158.5 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 97/219 (44%), Positives = 128/219 (58%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++ YG+ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AGY
Sbjct: 2 AAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGY 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXX 186
A+ + V LL D V VAD+GRGIP+ H A+ ++ V+T LHA
Sbjct: 62 ATTVNVVLLEDGGVEVADDGRGIPVATH-ASGIPTVDVVMTQLHAGGKFDSDAYAISGGL 120
Query: 187 XXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
NALS LEV + RDG E+ Q Y + +P+ +K + G+ +RF
Sbjct: 121 HGVGVSVV--NALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQ----GAPTK-KTGSTVRF 173
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE 285
W D VF T ++D T+A R++E+AFLN LTI L E
Sbjct: 174 WADPAVFETT-EYDFETVARRLQEMAFLNKGLTINLTDE 211
>TIGR_CMR|SPO_0155 [details] [associations]
symbol:SPO_0155 "DNA gyrase, B subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_165427.1 ProteinModelPortal:Q5LWU8
SMR:Q5LWU8 GeneID:3194940 KEGG:sil:SPO0155 PATRIC:23373557
Uniprot:Q5LWU8
Length = 805
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 244/551 (44%), Positives = 341/551 (61%)
Query: 70 ENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYAS 128
E P ++ YG++ I+VL+GLEAVRKRP MYIG T GLHH+VYE++DN +DEA AG+A
Sbjct: 5 EQPGNE-YGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHAD 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXX 188
++ V + AD+SVSVADNGRGIP+D+H SA E ++T LHA
Sbjct: 64 HVTVKIHADSSVSVADNGRGIPVDIHAEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHG 123
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALS+ LE+ +WR G E+ ++ RG V L V+ + DR GT +RF
Sbjct: 124 VGVSVV--NALSDWLELRIWRHGKEHVARFERGDTVEHL--RVVG-ECGDRTGTEVRFLA 178
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
F+ + + T+ R+RELAFLN + I L D P + E F+ GG+ E+V+
Sbjct: 179 STTTFSN-LDYVFETLEKRLRELAFLNSGVRIILI--DERPAERIETELFYEGGVREFVK 235
Query: 309 WLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVK 367
+L+ K P+ + F+ + D I +++A+ W +D+Y +T+L + N+I DGGTH+ G +
Sbjct: 236 YLDRSKSPVMPAPIYFKGERDDIGVEIAMWW-NDSYHETVLPFTNNIPQRDGGTHVAGFR 294
Query: 368 ASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
+LTRT+N+ + S K + I+ +G+ REGLTC++SV+VP+P+F QTK +L + EVR
Sbjct: 295 GALTRTINNYAQSSGIAKREKINFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVR 354
Query: 428 KVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGK 487
V+ V E L E+ E +P+V R+K+ + + L GK
Sbjct: 355 PAVENLVNEKLAEWFEENPNVAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGK 414
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 547
L DCS P ++E+F+VEGDSAGGSA+ GRDRR QA+LPLRGKILNVER M ++E
Sbjct: 415 LKDCSEKDPSKTEVFLVEGDSAGGSAQTGRDRRTQAVLPLRGKILNVERARFDRMLGSQE 474
Query: 548 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 607
I NL+ ALG G+ ++F LRYHKI+I+TDADVDGAHIRTLLLTFFYR L + G
Sbjct: 475 IGNLVMALGTGIGRDEFNISKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGY 534
Query: 608 IYVGVPPLYKV 618
+Y+ PPLYKV
Sbjct: 535 LYIAQPPLYKV 545
>UNIPROTKB|Q89W70 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265 EMBL:BA000040
GenomeReviews:BA000040_GR GO:GO:0003918 SUPFAM:SSF56719
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939 HSSP:P06982
RefSeq:NP_767463.1 ProteinModelPortal:Q89W70 SMR:Q89W70
GeneID:1047796 KEGG:bja:bll0823 PATRIC:21185152
BioCyc:BJAP224911:GJEJ-831-MONOMER Uniprot:Q89W70
Length = 811
Score = 1158 (412.7 bits), Expect = 1.4e-117, P = 1.4e-117
Identities = 252/556 (45%), Positives = 339/556 (60%)
Query: 65 TEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQ 123
T A E YG+E I+VL+GL+AVRKRP MYIG T GLHH+VYE++DNA+DEA
Sbjct: 8 TPAENEPSNPSDYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEAL 67
Query: 124 AGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXX 183
AG+A+ ++V L ADNSV+V D+GRGIP+D+H SA E ++T LHA
Sbjct: 68 AGHATRVDVVLNADNSVTVRDDGRGIPVDIHKGEGISAAEVIMTQLHAGGKFDQNSYKVS 127
Query: 184 XXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 243
NALS L + +WRD E++ +++ G V L V+ D+ ++GT
Sbjct: 128 GGLHGVGVSVV--NALSSKLGLRIWRDNKEHYIEFAHGDAVAPL---VVVGDAPGKRGTE 182
Query: 244 IRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 303
+ F F I++D T+ R+RELAFLN + IAL EK + E ++GG+
Sbjct: 183 VTFLASPDTFKN-IEYDFATLEHRLRELAFLNSGVNIALSDMRHAVEKRE--EMHYSGGV 239
Query: 304 EEYVQWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362
EE+V++L+ +KK + + R + +GI ++ AL W +D+Y + +L + N+I DGGTH
Sbjct: 240 EEFVKYLDRNKKAIVPAPIMVRAEANGIGVEAALWW-NDSYHENVLCFTNNIPQRDGGTH 298
Query: 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG 422
+ G + +LTR +N G K + I+L+G+ REGLT ++SV+VP+P+F QTK +L
Sbjct: 299 LAGFRGALTRQVN--GYAEANAKKEKIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLV 356
Query: 423 NPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSS 482
+ EVR VV+ + E L + E HP R KS L S
Sbjct: 357 SSEVRPVVENVLNEALQAWFEEHPSEAKMIVGKVIQAAAAREAARKARELTR-KSPLSVS 415
Query: 483 SLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAM 542
SLPGKLADC P +SE+FIVEGDSAGGSAKQGR+R FQA+LPLRGKILNVER M
Sbjct: 416 SLPGKLADCQEKDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERVRPDKM 475
Query: 543 YKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTL 602
+E+I LI ALG G+ E F E LRYHKII++TDADVDGAHIRTLLLTFFYR + +
Sbjct: 476 LGSEQIGTLITALGTGISDE-FSIEKLRYHKIIVMTDADVDGAHIRTLLLTFFYRQMRDI 534
Query: 603 FDEGCIYVGVPPLYKV 618
D G +Y+ PPLYKV
Sbjct: 535 IDGGYLYIAQPPLYKV 550
>UNIPROTKB|Q9KVX3 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF
ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 239/549 (43%), Positives = 336/549 (61%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AGY +I
Sbjct: 1 MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + DNSVSV+D+GRGIP ++HP SA E ++TVLHA
Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALSE + +T++R G + Q Y G P L V +R GT +RFWP Q
Sbjct: 121 SVV--NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQ 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT I+F ++ +A R+REL+FLN ++I L E + +K+ + + GG++ +V LN
Sbjct: 175 TFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLN 230
Query: 312 TDKKPLHD-VVGFRKD-VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
+K P+H+ V F ++ DGI++++A+QW +D + + + + N+I DGGTH+ G + +
Sbjct: 231 RNKTPIHEKVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRTLN+ K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+
Sbjct: 290 LTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 349
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+ ++ E L ++L +P R+K L + LPGKLA
Sbjct: 350 VESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC P SE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
LI ALG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR L + G IY
Sbjct: 470 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 529
Query: 610 VGVPPLYKV 618
+ PPLYKV
Sbjct: 530 IAQPPLYKV 538
>TIGR_CMR|VC_0015 [details] [associations]
symbol:VC_0015 "DNA gyrase, subunit B" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 PROSITE:PS50880
OMA:IFETTEF ProtClustDB:PRK14939 PIR:H82376 RefSeq:NP_062599.1
ProteinModelPortal:Q9KVX3 SMR:Q9KVX3 PRIDE:Q9KVX3 DNASU:2615137
GeneID:2615137 KEGG:vch:VC0015 PATRIC:20079078 Uniprot:Q9KVX3
Length = 805
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 239/549 (43%), Positives = 336/549 (61%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AGY +I
Sbjct: 1 MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + DNSVSV+D+GRGIP ++HP SA E ++TVLHA
Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALSE + +T++R G + Q Y G P L V +R GT +RFWP Q
Sbjct: 121 SVV--NALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQ 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT I+F ++ +A R+REL+FLN ++I L E + +K+ + + GG++ +V LN
Sbjct: 175 TFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDEREEDKKDHF---MYEGGIQAFVTHLN 230
Query: 312 TDKKPLHD-VVGFRKD-VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
+K P+H+ V F ++ DGI++++A+QW +D + + + + N+I DGGTH+ G + +
Sbjct: 231 RNKTPIHEKVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRTLN+ K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+
Sbjct: 290 LTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 349
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+ ++ E L ++L +P R+K L + LPGKLA
Sbjct: 350 VESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC P SE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
LI ALG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR L + G IY
Sbjct: 470 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 529
Query: 610 VGVPPLYKV 618
+ PPLYKV
Sbjct: 530 IAQPPLYKV 538
>UNIPROTKB|P0AES6 [details] [associations]
symbol:gyrB species:83333 "Escherichia coli K-12"
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;IMP] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA;IDA] [GO:0042493 "response to drug"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046677 "response to antibiotic"
evidence=IEA] HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 EMBL:L10328 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009330 GO:GO:0009295 EMBL:X04341
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 PDB:3NUH PDBsum:3NUH
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK14939
EMBL:D87842 EMBL:M15548 PIR:D65172 RefSeq:YP_026241.1
RefSeq:YP_491736.1 PDB:1AJ6 PDB:1EI1 PDB:1KZN PDB:3G7E PDB:4DUH
PDBsum:1AJ6 PDBsum:1EI1 PDBsum:1KZN PDBsum:3G7E PDBsum:4DUH
ProteinModelPortal:P0AES6 SMR:P0AES6 DIP:DIP-48005N IntAct:P0AES6
PaxDb:P0AES6 PRIDE:P0AES6 EnsemblBacteria:EBESCT00000002623
EnsemblBacteria:EBESCT00000017095 GeneID:12930543 GeneID:948211
KEGG:ecj:Y75_p3474 KEGG:eco:b3699 PATRIC:32122895 EchoBASE:EB0419
EcoGene:EG10424 BioCyc:EcoCyc:EG10424-MONOMER
BioCyc:ECOL316407:JW5625-MONOMER BioCyc:MetaCyc:EG10424-MONOMER
BindingDB:P0AES6 ChEMBL:CHEMBL1826 DrugBank:DB00817
EvolutionaryTrace:P0AES6 Genevestigator:P0AES6 Uniprot:P0AES6
Length = 804
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 235/548 (42%), Positives = 333/548 (60%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S +Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ I
Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXX 191
V + ADNSVSV D+GRGIP +HP SA E ++TVLHA
Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120
Query: 192 XXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
NALS+ LE+ + R+G + Q Y G P L ++ GT +RFWP +
Sbjct: 121 SVV--NALSQKLELVIQREGKIHRQIYEHGVPQAPLAV----TGETEKTGTMVRFWPSLE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT +F++ +A R+REL+FLN ++I LR D + + + + GG++ +V++LN
Sbjct: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLN 230
Query: 312 TDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+H ++ F + DGI +++ALQW +D + + + + N+I DGGTH+ G +A++
Sbjct: 231 KNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +L + EV+ V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349
Query: 431 DQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLAD 490
+Q + E L EYL +P R+K L + LPGKLAD
Sbjct: 350 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550
C P SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469
Query: 551 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 610
LI ALG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR + + G +Y+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529
Query: 611 GVPPLYKV 618
PPLYKV
Sbjct: 530 AQPPLYKV 537
>TIGR_CMR|BA_3657 [details] [associations]
symbol:BA_3657 "DNA topoisomerase IV, B subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
HOGENOM:HOG000075154 KO:K02622 OMA:TDGTGLH ProtClustDB:PRK05559
TIGRFAMs:TIGR01058 HSSP:P06982 RefSeq:NP_845922.1
RefSeq:YP_020292.2 RefSeq:YP_029649.1 ProteinModelPortal:Q81Y98
IntAct:Q81Y98 DNASU:1085976 EnsemblBacteria:EBBACT00000013021
EnsemblBacteria:EBBACT00000015630 EnsemblBacteria:EBBACT00000022573
GeneID:1085976 GeneID:2818281 GeneID:2850873 KEGG:ban:BA_3657
KEGG:bar:GBAA_3657 KEGG:bat:BAS3392
BioCyc:BANT260799:GJAJ-3454-MONOMER
BioCyc:BANT261594:GJ7F-3563-MONOMER Uniprot:Q81Y98
Length = 654
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 244/547 (44%), Positives = 330/547 (60%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDEA AG+ I V +
Sbjct: 8 YNEDAIQVLEGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNSVDEALAGFGDEISVVIHK 67
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
DNS+SV D GRG+P +H K E +LTVLHA
Sbjct: 68 DNSISVIDKGRGMPTGMHKL-GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV-- 124
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGK-PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE L VT+ RDG Y Q++ G PVTTL + GT + F PD +F+T
Sbjct: 125 NALSEWLVVTIKRDGNIYEQRFENGGVPVTTLE----KIGKTKESGTTMHFKPDTTIFST 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+++ T+ R+RE AFL + I+++ E +D E + + + G+E +V +LN +K
Sbjct: 181 T-NYNYETLCERLRESAFLLKGMKISIKDERNDLE----DVFHYETGIEAFVSYLNEEKD 235
Query: 316 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
+H VV F + +GI +LA Q+ +D YS+ +L + N++RT DGGTH G K ++TR N
Sbjct: 236 SIHPVVYFTGEQNGIEAELAFQF-NDGYSENILSFVNNVRTKDGGTHEAGFKTAMTRVFN 294
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQS 433
+K +K+KD +L G +REG+ I+SVRVP +FEGQTK +LG E R +D
Sbjct: 295 EYARKVALLKEKDKNLEGTDIREGVAAIVSVRVPEEVLQFEGQTKGKLGTSEARSSIDAI 354
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVR--QKSVLRSSSLPGKLADC 491
V E+L +LE +PDV R +K +L GKL
Sbjct: 355 VSEHLAYFLEENPDVATLLVRKAIKAAQAREAARKAREEARTGKKKKKSEGTLSGKLTPA 414
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551
S P+++E+++VEGDSAGGSAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +
Sbjct: 415 QSRNPQKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTI 474
Query: 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 611
I A+G GV G +F E + Y K++I+TDAD DGAHI+ LLLTFFYRY K L + G +++
Sbjct: 475 IYAIGGGV-GNEFDVEDINYDKVVIMTDADTDGAHIQVLLLTFFYRYMKPLIEAGKVFIA 533
Query: 612 VPPLYKV 618
+PPLYKV
Sbjct: 534 LPPLYKV 540
>TIGR_CMR|CBU_0004 [details] [associations]
symbol:CBU_0004 "DNA gyrase, B subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:NP_819060.2 ProteinModelPortal:Q83FD5
PRIDE:Q83FD5 GeneID:1207924 KEGG:cbu:CBU_0004 PATRIC:17928685
BioCyc:CBUR227377:GJ7S-5-MONOMER Uniprot:Q83FD5
Length = 810
Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
Identities = 240/544 (44%), Positives = 333/544 (61%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AG+ S+I V +
Sbjct: 11 YDSSTIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGFCSHIWVTIH 70
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
AD SVSV DNGRGIP D+HP +SA E ++TVLHA
Sbjct: 71 ADGSVSVRDNGRGIPTDIHPEEGRSAAEVIMTVLHAGGKFDKNAYKVSGGLHGVGISVV- 129
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE L +T+ ++G Y Q Y G P L D+ GT IRF P +F+
Sbjct: 130 -NALSEELYMTIRQNGNVYTQTYKMGVPQAPLAV----TGKSDKTGTEIRFKPSNAIFSN 184
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+F ++ +A R+RELAFLN + +R E +D + + + + GG++ +V+ LN K
Sbjct: 185 T-EFHYDILAKRLRELAFLN----LGVRIELTDERSGRGDIFEYEGGIKAFVEHLNKKKT 239
Query: 316 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
P+H DV F + + I +++A+QW +D + +T+ + N+I DGGTH+ G +A+LTRTL
Sbjct: 240 PIHSDVFHFSTEKNDIVVEVAMQW-NDGFQETIFCFTNNIPQNDGGTHLAGFRAALTRTL 298
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N+ + K +++SG+ REGLT ++SV+VP+P+F QTK +L + EV+ VV+ +V
Sbjct: 299 NNYIEGEALAKKSKVTISGDDTREGLTVVLSVKVPDPKFSSQTKDKLVSSEVKPVVESTV 358
Query: 435 QEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSST 494
+ L +YL +P R+K+VL LPGKLADC
Sbjct: 359 AKQLHDYLLENPKQARIIAMKVIDAARAREAARKARDMTRRKNVLDLGGLPGKLADCQEK 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 554
P E+F+VEGDSAGGSAKQ RDRR+QAILPL+GKILNVE+ M + E+ LI A
Sbjct: 419 DPALCELFLVEGDSAGGSAKQARDRRYQAILPLKGKILNVEKARFDKMLSSAEVGTLITA 478
Query: 555 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 614
LG G+ E++ + LRYH+II++TDADVDG+HIRTLLLTFFYR L + G IY+ PP
Sbjct: 479 LGCGIGKEEYNPDKLRYHRIILMTDADVDGSHIRTLLLTFFYRQMPELIERGHIYIAQPP 538
Query: 615 LYKV 618
LYKV
Sbjct: 539 LYKV 542
>UNIPROTKB|Q59192 [details] [associations]
symbol:parE "DNA topoisomerase 4 subunit B" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005740 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000075154 EMBL:Z73234
EMBL:AF024713 PIR:C69637 RefSeq:NP_389691.2
ProteinModelPortal:Q59192 SMR:Q59192
EnsemblBacteria:EBBACT00000000468 GeneID:936151 KEGG:bsu:BSU18090
PATRIC:18975449 GenoList:BSU18090 KO:K02622 OMA:TDGTGLH
ProtClustDB:PRK05559 BioCyc:BSUB:BSU18090-MONOMER BindingDB:Q59192
ChEMBL:CHEMBL3485 HAMAP:MF_00939 TIGRFAMs:TIGR01058 Uniprot:Q59192
Length = 655
Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
Identities = 246/547 (44%), Positives = 325/547 (59%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE AG+ +I V +
Sbjct: 9 YNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHK 68
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
DNS+SV D GRG+P +H K E +LTVLHA
Sbjct: 69 DNSISVQDRGRGMPTGMHKL-GKPTPEVILTVLHAGGKFGQGGYKTSGGLHGVGASVV-- 125
Query: 197 NALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE L VT+ RDG Y Q++ G KPVT+L + + GT F PD +F+T
Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLE----KIGKTKKTGTLTHFKPDPTMFST 181
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
++ T++ R+RE AFL L I L E +D Q +++ G+E +V +LN +K
Sbjct: 182 TT-YNFETLSERLRESAFLLKGLKIELIDERND----QREVFYYENGIEAFVAYLNEEKD 236
Query: 316 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
L +VV F + I +D A Q+ +D YS+ +L + N++RT DGGTH G K ++TR N
Sbjct: 237 VLSEVVSFEGEHHSIEVDFAFQF-NDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFN 295
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQS 433
+K +K+KD +L G +REGL+ IISVR+P +FEGQTK +LG E R VD
Sbjct: 296 EYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAI 355
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVR--QKSVLRSSSLPGKLADC 491
V E L +LE + D R +K ++L GKL
Sbjct: 356 VSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPA 415
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551
S P ++E+++VEGDSAGGSAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +
Sbjct: 416 GSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTI 475
Query: 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 611
I A+G GV G DF + + Y KIII+TDAD DGAHI+ LLLTFFYRY K L + G +++
Sbjct: 476 IHAIGGGV-GADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIA 534
Query: 612 VPPLYKV 618
+PPLYKV
Sbjct: 535 LPPLYKV 541
>UNIPROTKB|A6UX65 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_001345400.1 ProteinModelPortal:A6UX65 SMR:A6UX65
STRING:A6UX65 GeneID:5358744 KEGG:pap:PSPA7_0004 PATRIC:19821910
BioCyc:PAER381754:GHMY-79-MONOMER Uniprot:A6UX65
Length = 806
Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
Identities = 237/549 (43%), Positives = 331/549 (60%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEV 132
+ TY S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AGY S I +
Sbjct: 4 NNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISI 63
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
+ D S++V DNGRGIP+D+H SA E ++TVLHA
Sbjct: 64 TIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVS 123
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS L +T+ R + Q Y G P L V D GT + F P +
Sbjct: 124 VV--NALSHELRLTIRRHNKVWEQVYHHGVPQFPLR----EVGETDGSGTEVHFKPSPET 177
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLN 311
F+ I F + +A RIREL+FLN + I LR E + E E F + GGL+ +V++LN
Sbjct: 178 FSN-IHFSWDILAKRIRELSFLNSGVGILLRDERTGKE-----ELFKYEGGLKAFVEYLN 231
Query: 312 TDKKPLHDVVGF--RKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
T+K ++ V F +++ DG+ +++ALQW +D++++ +L + N+I DGGTH+ G +++
Sbjct: 232 TNKSAVNQVFHFNVQREEDGVGVEVALQW-NDSFNENILCFTNNIPQRDGGTHLAGFRSA 290
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTR LN+ + K I+ +G+ REGLT IISV+VP+P+F QTK +L + EV+
Sbjct: 291 LTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 350
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+Q + +Y ++L +P+ R+K L + LPGKLA
Sbjct: 351 VEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLA 410
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC P SE++IVEGDSAGGSAKQGR+RR QAILPL+GKILNVE+ M ++E+
Sbjct: 411 DCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVG 470
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
LI ALG G+ E++ + LRYH III+TDADVDG+HIRTLLLTFF+R L + G +Y
Sbjct: 471 TLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVY 530
Query: 610 VGVPPLYKV 618
+ PPLYKV
Sbjct: 531 IAQPPLYKV 539
>TIGR_CMR|SO_0011 [details] [associations]
symbol:SO_0011 "DNA gyrase, B subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898 InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR011557
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 HSSP:P06982 RefSeq:NP_715653.1
ProteinModelPortal:Q8EKS9 SMR:Q8EKS9 GeneID:1167909
KEGG:son:SO_0011 PATRIC:23519713 Uniprot:Q8EKS9
Length = 805
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 231/546 (42%), Positives = 331/546 (60%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AG+ ++I + +
Sbjct: 5 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITITI 64
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
D SVSV D+GRGIP+ +H SA E ++TVLHA
Sbjct: 65 HVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 124
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
NALS+ L++T+ RDG + Q Y+ G P + + + GT IRFWP +Q F+
Sbjct: 125 --NALSKKLQLTIRRDGKVHEQFYTHGVP----DAPIKEIGDATKTGTEIRFWPSEQTFS 178
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
++F +A R+REL+FLN + +R D KN++ +Y GG+ +V +LN +K
Sbjct: 179 N-VEFHFEILAKRVRELSFLNSG--VGIRLVDERDNKNEFFKY--EGGISAFVDYLNRNK 233
Query: 315 KPLH-DVVGFRKDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
P++ DV F ++ D GIT+++A+QW +D Y + + + N+I DGGTH+ G +++LTR
Sbjct: 234 TPVNKDVFHFMQERDDGITVEVAMQW-NDGYQENIFCFTNNIPQRDGGTHLAGFRSALTR 292
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LN+ + K + +G+ REGLT +ISV+VP+P+F QTK +L + EV+ V+Q
Sbjct: 293 NLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQ 352
Query: 433 SVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS 492
++ E L +YL +P R+K L LPGKLADC
Sbjct: 353 TMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQ 412
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
P SEI+IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+ LI
Sbjct: 413 EKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI 472
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
ALG G+ +++ + RYH III+TDADVDG+HIRTLLLTFF+R L + G +Y+
Sbjct: 473 TALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQ 532
Query: 613 PPLYKV 618
PPL+KV
Sbjct: 533 PPLFKV 538
>TIGR_CMR|NSE_0721 [details] [associations]
symbol:NSE_0721 "DNA gyrase, B subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470
Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_506597.1 ProteinModelPortal:Q2GD49
SMR:Q2GD49 STRING:Q2GD49 GeneID:3932056 KEGG:nse:NSE_0721
PATRIC:22681457 BioCyc:NSEN222891:GHFU-733-MONOMER Uniprot:Q2GD49
Length = 783
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 231/549 (42%), Positives = 336/549 (61%)
Query: 73 VSKT-YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNI 130
+S T Y ++ I+VL+GLEAVRKRP MYIG T GLH +VYE++DN+VDE+ AGY + I
Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60
Query: 131 EVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXX 190
EV + D S+SV DNGRG+P D+H SA E ++T LHA
Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMH-GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119
Query: 191 XXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDK 250
NALS+ L++T++RDG + ++ G+ V +L+ + + D+ GT + F P +
Sbjct: 120 VSVV--NALSDWLKLTIYRDGKVHFAEFENGETVRSLS---VTGECGDKTGTLVHFLPSR 174
Query: 251 QVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL 310
F + +T+ R REL+FLNP L I+L + +F +GG EE+V +L
Sbjct: 175 STFKNTTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKV-VFFSSGGTEEFVAYL 233
Query: 311 NTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
+ K+P+H + VD I ID+++QW +D+Y + +L + N+I+ DGGTH+ ++++
Sbjct: 234 DRSKQPIHSTPIRVVGGVDSIAIDVSMQW-NDSYYENVLCFTNNIKQKDGGTHLAALRSA 292
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
+TR +++ K +K + +SGE VREGL+ I+SV++P+P+F QTK +L + EV+ V
Sbjct: 293 MTRVMHNYIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPV 352
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
+++ V + L +LE +P R+K L ++LPGKLA
Sbjct: 353 IEKIVSDALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLA 412
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC +PE SE+ IVEGDSAGGSAKQGRDR+ QA+LPLRGKILNVE+ + + EI
Sbjct: 413 DCQEKSPELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIG 472
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
NLI ALG + E+F + +RYHKIII+TDADVDG HIRTLLLTFF+RY + + + G +Y
Sbjct: 473 NLIAALGTSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLY 532
Query: 610 VGVPPLYKV 618
+ PLYKV
Sbjct: 533 IAQTPLYKV 541
>UNIPROTKB|P35886 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 EMBL:L27063
EMBL:AL939118 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 PROSITE:PS50880 OMA:IFETTEF ProtClustDB:PRK05644
HOGENOM:HOG000075154 RefSeq:NP_628061.1 ProteinModelPortal:P35886
GeneID:1099310 KEGG:sco:SCO3874 PATRIC:23737532 Uniprot:P35886
Length = 686
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 240/562 (42%), Positives = 338/562 (60%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
S +Y + I VLEGL+AVRKRP MYIGSTG RGLHHLV E++DN+VDEA AG+A I+V
Sbjct: 30 SASYDASAITVLEGLDAVRKRPGMYIGSTGERGLHHLVQEVVDNSVDEALAGHADTIDVT 89
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXX 193
+L D V V DNGRGIP+ + P+ K A+E VLTVLHA
Sbjct: 90 ILPDGGVRVVDNGRGIPVGIVPSEGKPAVEVVLTVLHAGGKFGGGGYAVSGGLHGVGVSV 149
Query: 194 XXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
NALS + V V DG + Q+Y G P +L H ++ + GT + FW D +F
Sbjct: 150 V--NALSTRVAVEVKTDGYRWTQEYKLGVPTASLARH----EATEETGTTVTFWADGDIF 203
Query: 254 -TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS----------DPEKNQYNE--YFFA 300
TT F+ + + K+ + +E + + EK++ Y +
Sbjct: 204 ETTDYSFETLSRRFQEMAFLNKGLKINLTDERESAKATAGADEAGEDEKHEVKSVSYHYE 263
Query: 301 GGLEEYVQWLNTDKKPL-HD-VVGFR-KDVD-GITIDLALQWCSDAYSDTMLGYANSIRT 356
GG+ ++V +LN+ K L H V+ +D D +++++A+QW + Y++ + +AN I T
Sbjct: 264 GGIVDFVTYLNSRKGELVHPTVIDLEAEDKDKSLSLEVAMQW-NGGYTEGVYSFANIIHT 322
Query: 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 416
+GGTH EG +A+LT +N + K +++KD +L+G+ +REGLT IISV++ P+FEGQ
Sbjct: 323 HEGGTHEEGFRAALTSLINKYARDKKLLREKDDNLTGDDIREGLTAIISVKLAEPQFEGQ 382
Query: 417 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQK 476
TKT+LGN EV+ V + V E+LT++L+ +P+ R+K
Sbjct: 383 TKTKLGNTEVKTFVQKVVYEHLTDWLDRNPNEAADIIRKGIQAAHARVAARKARDLTRRK 442
Query: 477 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 536
+L S+SLPGKL+DC S P + EIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+
Sbjct: 443 GLLESASLPGKLSDCQSNDPTKCEIFIVEGDSAGGSAKSGRNPQYQAILPIRGKILNVEK 502
Query: 537 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 596
+ +N+EIQ +I A G GV EDF E LRYHKII++ DADVDG HI TLLLTF +
Sbjct: 503 ARIDRILQNQEIQAMISAFGTGVH-EDFDIEKLRYHKIILMADADVDGQHINTLLLTFLF 561
Query: 597 RYQKTLFDEGCIYVGVPPLYKV 618
R+ + L + G +Y+ PPLYK+
Sbjct: 562 RFMRPLVESGHVYLSRPPLYKI 583
>TIGR_CMR|APH_0716 [details] [associations]
symbol:APH_0716 "DNA gyrase, B subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01898
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR011557 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005737 GO:GO:0005694 GO:GO:0006261 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 HOGENOM:HOG000075155 KO:K02470 Gene3D:3.40.50.670
TIGRFAMs:TIGR01059 OMA:IFETTEF ProtClustDB:PRK14939
RefSeq:YP_505297.1 ProteinModelPortal:Q2GK04 SMR:Q2GK04
STRING:Q2GK04 GeneID:3930586 KEGG:aph:APH_0716 PATRIC:20950116
BioCyc:APHA212042:GHPM-734-MONOMER Uniprot:Q2GK04
Length = 793
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 230/550 (41%), Positives = 330/550 (60%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+Y + I VL GL+AV+KRP MYIG T GLHH+ YE++DNA+DEA AG+ + I++ +
Sbjct: 3 SYNASSITVLRGLDAVKKRPGMYIGDTDDGSGLHHMAYEVIDNAIDEALAGFCNKIDIVI 62
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
AD S+SV DNGRGIPID+H SA E ++T LHA
Sbjct: 63 AADGSISVTDNGRGIPIDIHEEEGISAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGVSVV 122
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
NALS LE+ ++++G EY ++ GK V L + + +++GT +RF P VF+
Sbjct: 123 --NALSSWLELVIYKEGREYFMRFEEGKAVAPLK---MVGECGNKKGTCVRFMPSSDVFS 177
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDP--EKNQYNEYFFAG-GLEEYVQWLN 311
F ++T+ RIREL+FLN ++I+L+ P E N N A G+ +V++L+
Sbjct: 178 FT-DFSYSTLENRIRELSFLNSNVSISLKDLRESPVLESNFGNVSDAATKGVSLFVEYLD 236
Query: 312 TDKKPLHDVVGFRKDVDGITIDLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+ V+ + G I + + C +D+Y + ML + N+IR +GGTH+ G +++L
Sbjct: 237 RNKTPVTPVITLSGIMSGYEISVEVSMCWNDSYYENMLCFTNNIRQREGGTHLAGFRSAL 296
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TR +N+ +K +S+ GE VREGLTC++S+++P+P F QTK +L + E R VV
Sbjct: 297 TRCVNNYATNEGYLKKAKVSIIGEDVREGLTCVLSIKMPDPRFSSQTKDKLVSSEARLVV 356
Query: 431 DQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLAD 490
+ + E L+ E +P + ++ + L +S+PGKLAD
Sbjct: 357 ESIMFEKLSSIFETNPKLAMSVVERVIRSAKGREAARKAREVIKSRGTLDFTSIPGKLAD 416
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550
C +PE SE+FIVEG+SAGGSAKQGRDRR QA+L LRGKILNVER + EI +
Sbjct: 417 CQEKSPELSELFIVEGNSAGGSAKQGRDRRCQAVLSLRGKILNVERVGLDRTLSSSEITS 476
Query: 551 LIRALG--LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 608
LI A+G +G+ D K +RYHKIII+TDADVDG+HIRTLLLTFF+RY + L D G +
Sbjct: 477 LIMAIGSNIGIGSFDISK--VRYHKIIIMTDADVDGSHIRTLLLTFFFRYMRELIDAGYL 534
Query: 609 YVGVPPLYKV 618
Y+ PPLYK+
Sbjct: 535 YIAQPPLYKL 544
>TIGR_CMR|ECH_0620 [details] [associations]
symbol:ECH_0620 "DNA gyrase, B subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 HOGENOM:HOG000075155
KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059 OMA:IFETTEF
ProtClustDB:PRK14939 RefSeq:YP_507430.1 ProteinModelPortal:Q2GGK3
STRING:Q2GGK3 GeneID:3927738 KEGG:ech:ECH_0620 PATRIC:20576692
BioCyc:ECHA205920:GJNR-622-MONOMER Uniprot:Q2GGK3
Length = 798
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 227/554 (40%), Positives = 339/554 (61%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + I VL+GL+AVRKRP MYIG T GLHH+VYE++DN++DEA AG+ + I++ +
Sbjct: 4 YNASSITVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVIDNSIDEALAGFCNKIDIVIQ 63
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
+D SVSV DNGRGIP+D+H SA E ++T LHA
Sbjct: 64 SDGSVSVVDNGRGIPVDMHEDEGMSAAEVIMTQLHAGGKFDHNSYKVSGGLHGVGISVV- 122
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS LE+T+WR+G EY ++ G V +L+ + ++ ++GT+I F P K +F++
Sbjct: 123 -NALSSWLELTIWRNGKEYFMRFEDGITVKSLS---VVGENTTKKGTKITFLPSKNIFSS 178
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKE------DSD---PEKNQYNEYFFAGGLEEY 306
I F ++T+ RIREL+FLN + + L+ +S + ++ N+ G +
Sbjct: 179 -INFSYSTLENRIRELSFLNSNINMNLKDLRGAQILNSSFGLKDNSKVND-IEDRGTAAF 236
Query: 307 VQWLNTDKKPLHDVVGFRKDV--DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIE 364
V++L+ +K + VV V GI+++L++ W +D+Y + ML + N+IR DGGTH+
Sbjct: 237 VKYLDRNKTAVTKVVHIEGIVLEHGISLELSMHW-NDSYYENMLCFTNNIRQKDGGTHLA 295
Query: 365 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNP 424
G ++++TR +N+ +K +++ GE VREGLTC++++++P+P+F QTK +L +
Sbjct: 296 GFRSAMTRCINNYATNEGFLKKAKVNILGEDVREGLTCVLAIKLPDPKFSSQTKDKLVSS 355
Query: 425 EVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSL 484
E R V+ V E LT E +P + ++ K+ + L
Sbjct: 356 EARTAVENIVYEKLTNIFETNPKLATSIIERIIRSAKGREAARRARDLIKSKNGFDFTIL 415
Query: 485 PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
PGKLADC +PE SE+FIVEG+SAGGSAKQGRDRR QA+L L+GKILNVER +
Sbjct: 416 PGKLADCQEKSPELSELFIVEGNSAGGSAKQGRDRRSQAVLSLKGKILNVERASLDRILS 475
Query: 545 NEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD 604
+ EI +LI A+G + E+F E +RYHK+II+TDADVDG+HIRTLLLTFF+RY + + +
Sbjct: 476 SAEIASLITAIGSNIGTENFDIEKVRYHKVIIMTDADVDGSHIRTLLLTFFFRYMREVIE 535
Query: 605 EGCIYVGVPPLYKV 618
+G +Y+ PPLYKV
Sbjct: 536 KGYLYIAQPPLYKV 549
>UNIPROTKB|A9WGP2 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01898 InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR011557 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670 TIGRFAMs:TIGR01059
OMA:IFETTEF ProtClustDB:PRK05644 HOGENOM:HOG000075154
RefSeq:YP_001636597.1 ProteinModelPortal:A9WGP2 STRING:A9WGP2
GeneID:5827483 KEGG:cau:Caur_3009 PATRIC:21417339
BioCyc:CAUR324602:GIXU-3058-MONOMER Uniprot:A9WGP2
Length = 636
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 228/550 (41%), Positives = 324/550 (58%)
Query: 70 ENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASN 129
E P TY QIQVLEG+EAVRKRP MYIG T GLH +V E++DN+VDE AG A++
Sbjct: 4 ETPT--TYDESQIQVLEGMEAVRKRPGMYIGPTDINGLHTMVREVVDNSVDEVMAGRATS 61
Query: 130 IEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXX 189
+ V + D SV+V+D+G GIP+ +HP S L V+T LHA
Sbjct: 62 VSVTIHRDGSVTVSDDGSGIPVGIHPKEGISTLTLVMTRLHAGGKFGSGGYKVSSGLHGV 121
Query: 190 XXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 249
NALS + V V+R+G Y+Q+Y G PVT V+ ++ DR GT RF PD
Sbjct: 122 GVSAV--NALSAYMRVDVYRNGRHYYQEYRAGVPVTD----VIDLEPTDRHGTTTRFLPD 175
Query: 250 KQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW 309
+ T + ++ +T+A R RE+++LN L E ++ E N ++F GG+ YV+
Sbjct: 176 TSIIQT-LDYNFDTLAQRFREMSYLNKGLRFKFVDERTNRELN----FYFEGGIVSYVRH 230
Query: 310 LNTDKKPLHDVVGF-RKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
LN +K LH + + VD + +++ALQ+ +D + +AN+I DGG+H+ G +
Sbjct: 231 LNKEKTVLHRQPFYVERIVDDVMVEVALQYTDSFDTDNVYTFANNINNADGGSHLSGFRT 290
Query: 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 428
+LTR +N+ + +KD + +L+G+ VREGLT +ISV++ +P+F QTK +L +PE
Sbjct: 291 ALTRVINNYARAKGLLKDNESNLTGDDVREGLTAVISVKLKDPQFSSQTKEKLVSPEAAS 350
Query: 429 VVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKL 488
V + + +L+ +P R KS + SLPGKL
Sbjct: 351 AVATVFSDAFSAWLDENPTEARRIIEKAISAARTRLAVQKVRETAR-KSAMEGFSLPGKL 409
Query: 489 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEI 548
ADCS P E++IVEGDSAGG+AKQGRDRRFQAILPLRGKILNVE+ M N E+
Sbjct: 410 ADCSDPNPARCELYIVEGDSAGGTAKQGRDRRFQAILPLRGKILNVEKSRLDRMLSNAEV 469
Query: 549 QNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 608
+ LI A+G + G+ F LRYH+I ++TDADVDG+HIRTLLLTFF+R+ + L G +
Sbjct: 470 RALITAIGTSI-GDQFDLSKLRYHRIFLMTDADVDGSHIRTLLLTFFFRHMRPLITNGHL 528
Query: 609 YVGVPPLYKV 618
++ PPLY++
Sbjct: 529 FIAQPPLYRI 538
>UNIPROTKB|Q7RHG3 [details] [associations]
symbol:PY04024 "DNA topoisomerase II, putative"
species:73239 "Plasmodium yoelii yoelii" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470
Gene3D:3.40.50.670 HSSP:P06982 EMBL:AABL01001206 RefSeq:XP_724272.1
ProteinModelPortal:Q7RHG3 STRING:Q7RHG3 GeneID:3789597
KEGG:pyo:PY04024 EuPathDB:PlasmoDB:PY04024 Uniprot:Q7RHG3
Length = 930
Score = 522 (188.8 bits), Expect = 1.4e-107, Sum P(4) = 1.4e-107
Identities = 107/271 (39%), Positives = 174/271 (64%)
Query: 301 GGLEEYVQWLNTDK----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 356
GGL+EY++ L +K K + V+ I +DL L+W ++ Y++ +L + N++ T
Sbjct: 407 GGLDEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNT 466
Query: 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 416
IDGGTH++ +K +++R++N KK++T+K+ +++ GE++REGLT I+S+++ NPEFEGQ
Sbjct: 467 IDGGTHVDAMKYAISRSINYNVKKNETIKNF-VNIPGEYIREGLTAILSIKMNNPEFEGQ 525
Query: 417 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQK 476
TKT+LG+ ++ +++ + E L+E + P++ +R K
Sbjct: 526 TKTKLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSK 585
Query: 477 S-VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVE 535
+ S+ LPGKL DC S ++EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE
Sbjct: 586 NNQYYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVE 645
Query: 536 R-KDEAAMYKNEEIQNLIRALGLGVKGEDFK 565
+ K+ +++N E+++LI A+GL V ++ K
Sbjct: 646 KIKNNKKIFENIELKSLITAIGLNVNYDNSK 676
Score = 289 (106.8 bits), Expect = 1.4e-107, Sum P(4) = 1.4e-107
Identities = 55/95 (57%), Positives = 72/95 (75%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I +LEGLEAVRKRP MYIG+T +GLH +++EI+DNAVDE + I+V +
Sbjct: 113 YDAKDIVILEGLEAVRKRPGMYIGNTDSKGLHQILFEIVDNAVDEYNNHECNQIKVIIHN 172
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171
D S+++ DNGRGIP D+H T KSALETVLTVLH+
Sbjct: 173 DESITIEDNGRGIPCDIHEKTKKSALETVLTVLHS 207
Score = 189 (71.6 bits), Expect = 1.4e-107, Sum P(4) = 1.4e-107
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 559 VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
+K +F +LRY KIII+TDADVDG HI LLLTF YR+QK + + G +YV PPLYKV
Sbjct: 691 IKKNNFIDTSLRYGKIIIMTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKV 750
Query: 619 CF 620
+
Sbjct: 751 TY 752
Score = 139 (54.0 bits), Expect = 1.4e-107, Sum P(4) = 1.4e-107
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS ++V V+RD Y+ + +GK V L P+ ++GT+I + PD +F T
Sbjct: 287 NALSTFMKVNVFRDNKIYNIELEKGKVVKELNVQDCPIK---KRGTQIHYKPDNTIFKTN 343
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKN 292
I+ + I R+ +LA+LN KLT E + + N
Sbjct: 344 IKHNSEFIKNRLHQLAYLNDKLTFYFYDERNSNKGN 379
Score = 46 (21.3 bits), Expect = 7.1e-11, Sum P(2) = 7.1e-11
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 311 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 366
NTD K LH ++ F + VD + C+ ++D + ++ R I H +
Sbjct: 137 NTDSKGLHQIL-F-EIVDNAVDEYNNHECNQIKVIIHNDESITIEDNGRGIPCDIHEKTK 194
Query: 367 KASLTRTLNSLGKKSKTVKDKDISL 391
K++L L L +K + D DI++
Sbjct: 195 KSALETVLTVLHSGAKFLDD-DINM 218
>GENEDB_PFALCIPARUM|PFL1915w [details] [associations]
symbol:PFL1915w "dna gyrase subunit b, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:AE014188 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0020011 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 HOGENOM:HOG000075156
GenomeReviews:AE014188_GR HSSP:P06982 RefSeq:XP_001350789.1
ProteinModelPortal:Q8I528 IntAct:Q8I528 MINT:MINT-1670662
PRIDE:Q8I528 EnsemblProtists:PFL1915w:mRNA GeneID:811435
KEGG:pfa:PFL1915w EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN
ProtClustDB:PTZ00109 Uniprot:Q8I528
Length = 1006
Score = 503 (182.1 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 105/264 (39%), Positives = 166/264 (62%)
Query: 302 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 357
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 358 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 417
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 418 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 477
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 478 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 536
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE+
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEK 703
Query: 537 -KDEAAMYKNEEIQNLIRALGLGV 559
K+ +++N E+++LI ALGL V
Sbjct: 704 IKNNKRIFENSELKSLITALGLNV 727
Score = 288 (106.4 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 55/95 (57%), Positives = 73/95 (76%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I +LEGLEAVRKRP MYIG+T +GLH +++EI+DN+VDE + I+V +
Sbjct: 123 YDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNTIKVVIHK 182
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171
D+SV++ DNGRGIP D+H T KSALETVLTVLH+
Sbjct: 183 DDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHS 217
Score = 193 (73.0 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 42/93 (45%), Positives = 56/93 (60%)
Query: 528 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 587
+GK N ++K + + E QN L K + LRY K+II+TDADVDG HI
Sbjct: 745 KGK--NSKKKSDLKNSRFESTQNNNNILNK--KKDILVDNTLRYGKVIIMTDADVDGEHI 800
Query: 588 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620
R LLLTF YR+QK + + G +YV PPLYK+ +
Sbjct: 801 RILLLTFLYRFQKEIIENGNVYVACPPLYKITY 833
Score = 138 (53.6 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS ++V V+R+ Y + +GK LT P++ ++GT+I + PD +F ++
Sbjct: 290 NALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSS 346
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 294
+ + + I RI +LA+LN KLT E S+ + + Y
Sbjct: 347 TKHNSDLIKNRIHQLAYLNEKLTFYFYDERSENKNSIY 384
Score = 37 (18.1 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 28/132 (21%), Positives = 48/132 (36%)
Query: 311 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 366
NTD K LH ++ F + +D + C+ + D + ++ R I H +
Sbjct: 147 NTDVKGLHQIL-F-EIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEKTK 204
Query: 367 KASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 425
K++L L L +K D+ D + G T S + N
Sbjct: 205 KSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNT-SEKNNRDNISNNNNNNNNNKR 263
Query: 426 VRKVVDQSVQEY 437
+K +S Q+Y
Sbjct: 264 TKKNSKESAQKY 275
>UNIPROTKB|Q8I528 [details] [associations]
symbol:GyrB "Term=DNA gyrase subunit B;evidence=inferred
from direct assay" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0020011
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075156 GenomeReviews:AE014188_GR
HSSP:P06982 RefSeq:XP_001350789.1 ProteinModelPortal:Q8I528
IntAct:Q8I528 MINT:MINT-1670662 PRIDE:Q8I528
EnsemblProtists:PFL1915w:mRNA GeneID:811435 KEGG:pfa:PFL1915w
EuPathDB:PlasmoDB:PF3D7_1239500 OMA:YDERSEN ProtClustDB:PTZ00109
Uniprot:Q8I528
Length = 1006
Score = 503 (182.1 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 105/264 (39%), Positives = 166/264 (62%)
Query: 302 GLEEYVQWLNTDKKPL---HD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTI 357
GL EY+ + +K L +D ++ I IDL ++W S+ Y++ ++ + N++ T
Sbjct: 465 GLNEYITNITKNKTNLFKDNDKIISISCYHKNIYIDLRMKWLSNQYNENIISFVNNVNTT 524
Query: 358 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 417
DGGTH++ +K +++R +N KK++ +K+ +++ GE++REGLT I+SV++ NPEFEGQT
Sbjct: 525 DGGTHVDALKYAVSRCVNYNIKKNEMIKNF-VNIPGEYIREGLTAILSVKMNNPEFEGQT 583
Query: 418 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKS 477
KT+LG+ ++ +++ + E L+E + P++ +R K+
Sbjct: 584 KTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYFKALQAKLSDEEAKAARDLIRSKN 643
Query: 478 VLRSSS-LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 536
SS+ LPGKL DC S +EIFIVEGDSA GSAKQ R+R QAILPL+GKILNVE+
Sbjct: 644 NQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEK 703
Query: 537 -KDEAAMYKNEEIQNLIRALGLGV 559
K+ +++N E+++LI ALGL V
Sbjct: 704 IKNNKRIFENSELKSLITALGLNV 727
Score = 288 (106.4 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 55/95 (57%), Positives = 73/95 (76%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I +LEGLEAVRKRP MYIG+T +GLH +++EI+DN+VDE + I+V +
Sbjct: 123 YDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNTIKVVIHK 182
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171
D+SV++ DNGRGIP D+H T KSALETVLTVLH+
Sbjct: 183 DDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHS 217
Score = 193 (73.0 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 42/93 (45%), Positives = 56/93 (60%)
Query: 528 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 587
+GK N ++K + + E QN L K + LRY K+II+TDADVDG HI
Sbjct: 745 KGK--NSKKKSDLKNSRFESTQNNNNILNK--KKDILVDNTLRYGKVIIMTDADVDGEHI 800
Query: 588 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620
R LLLTF YR+QK + + G +YV PPLYK+ +
Sbjct: 801 RILLLTFLYRFQKEIIENGNVYVACPPLYKITY 833
Score = 138 (53.6 bits), Expect = 3.7e-105, Sum P(4) = 3.7e-105
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS ++V V+R+ Y + +GK LT P++ ++GT+I + PD +F ++
Sbjct: 290 NALSSFMKVKVFRNNKIYSIELEKGKVTKELTITNCPIN---KRGTQIHYKPDSSIFKSS 346
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQY 294
+ + + I RI +LA+LN KLT E S+ + + Y
Sbjct: 347 TKHNSDLIKNRIHQLAYLNEKLTFYFYDERSENKNSIY 384
Score = 37 (18.1 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 28/132 (21%), Positives = 48/132 (36%)
Query: 311 NTDKKPLHDVVGFRKDVDGITIDLALQWCSDA----YSDTMLGYANSIRTIDGGTHIEGV 366
NTD K LH ++ F + +D + C+ + D + ++ R I H +
Sbjct: 147 NTDVKGLHQIL-F-EIIDNSVDEYNNFECNTIKVVIHKDDSVTIEDNGRGIPCDVHEKTK 204
Query: 367 KASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 425
K++L L L +K D+ D + G T S + N
Sbjct: 205 KSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTNT-SEKNNRDNISNNNNNNNNNKR 263
Query: 426 VRKVVDQSVQEY 437
+K +S Q+Y
Sbjct: 264 TKKNSKESAQKY 275
>UNIPROTKB|Q9RVW5 [details] [associations]
symbol:DR_0906 "DNA gyrase, subunit B" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0009295 EMBL:AE000513
GenomeReviews:AE000513_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 KO:K02470 Gene3D:3.40.50.670 OMA:IFETTEF
ProtClustDB:PRK05644 HOGENOM:HOG000075154 HSSP:P06982 PIR:A75461
RefSeq:NP_294630.1 ProteinModelPortal:Q9RVW5 SMR:Q9RVW5
GeneID:1799432 KEGG:dra:DR_0906 PATRIC:21629376
BioCyc:DRAD243230:GH46-1277-MONOMER Uniprot:Q9RVW5
Length = 663
Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
Identities = 232/553 (41%), Positives = 322/553 (58%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYI-GSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y ++QI VLEG++AVRKRP MY+ G TG G H L+ EI+DN +DE AG+A I++ L
Sbjct: 13 YNADQISVLEGMDAVRKRPGMYVQGGTGIDGYHQLLTEIIDNGIDEGLAGFAGEIQIVLH 72
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
AD S +V D+GRGIP+D+ + + A+E + + LHA
Sbjct: 73 ADGSATVTDDGRGIPVDIMKSKGRPAIEVIFSELHAGGKFGQGAYKVSGGLHGVGSTVV- 131
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFT 254
NALS L+VTV + +H ++ RG V L VL KD + T++ F PD +F
Sbjct: 132 -NALSTYLDVTVNKHKQLHHIRFERGVLVQPL--EVLGATPKDVKWSTKVSFHPDPTIFK 188
Query: 255 TAI-QFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLN 311
QFD+ I R+RELA+L L I +R E ++ + E F GG+ + + L
Sbjct: 189 EFDNQFDYLRIRNRLRELAYLTG-LKIVIRDERTELHGGEIKEEVFHEKGGIANFARALV 247
Query: 312 TDK-KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
TD K L+D V R + +++A + SD +L YAN IRT DGGT + G K +
Sbjct: 248 TDDTKLLYDQPVVMRGTHAEVEVEVAFIHANTYASDNILTYANMIRTRDGGTPLTGFKTA 307
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
TR LN K +K + SG+ + EG+ C++SV+V +P+FE Q K +L N E +
Sbjct: 308 YTRVLNKYAKDKNLIKAGNPVPSGDDLLEGIYCVVSVKVGDPQFESQAKVKLLNSEAQTA 367
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V+ V E ++LE +P + VR+ + L + LPGKLA
Sbjct: 368 VNAIVGEKFAQFLEENPKIGKTIVEKAAEAARARDAARKARDIVRRSNPLENDDLPGKLA 427
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DCSS P ESE+FIVEG+SAGGSAK GR+RRFQAILPLRGKILNVE+ + + KN EI+
Sbjct: 428 DCSSQDPAESELFIVEGNSAGGSAKGGRERRFQAILPLRGKILNVEKAELNKILKNAEIR 487
Query: 550 NLIRALGLGV--KGED--FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 605
+LI A+G G KGE+ F E LRYHKI+I+TDAD+DG HI TLLLTFF+R+ + + ++
Sbjct: 488 SLIGAIGAGFDGKGEEMRFDLENLRYHKIVIMTDADMDGGHITTLLLTFFFRFMRPIVEQ 547
Query: 606 GCIYVGVPPLYKV 618
G +Y+ PPLYK+
Sbjct: 548 GHLYIAQPPLYKI 560
>UNIPROTKB|O69998 [details] [associations]
symbol:O69998 "Putative DNA gyrase subunit B"
species:100226 "Streptomyces coelicolor A3(2)" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 HOGENOM:HOG000075154 ProtClustDB:PRK05559
HSSP:P06982 EMBL:AL939125 PIR:T35196 RefSeq:NP_629945.1
ProteinModelPortal:O69998 GeneID:1101264 KEGG:sco:SCO5822
PATRIC:23741544 OMA:DSEMIIS Uniprot:O69998
Length = 707
Score = 553 (199.7 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 115/291 (39%), Positives = 169/291 (58%)
Query: 332 IDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391
+D+AL+W Y T+ + N I T GGTH+ G + ++ +T+N + + K ++ + +
Sbjct: 310 VDVALRW-GTGYDTTVRSFVNIIATPKGGTHVAGFEQAVAKTMNEVLRTKKMLRVAEDDI 368
Query: 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYL-ELHPDVXX 450
+ EGLT +++VR+ P+FEGQTK LG R++V+ + L +L D
Sbjct: 369 VKDDALEGLTAVVTVRLAEPQFEGQTKEVLGTSAARRIVNNVISRELKAFLTSTKRDAAQ 428
Query: 451 XXXXXXXXXXXXXXXXXXXXX---XVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGD 507
R+K+ L SSSLP KLADC S + SE+FIVEGD
Sbjct: 429 QARVVMEKAVAAARTRIAARQHKDAQRRKTALESSSLPAKLADCRSDDVDRSELFIVEGD 488
Query: 508 SAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 567
SA G+AK R+ FQA+LP+RGKILNV++ M KN E +I+ +G G G F +
Sbjct: 489 SALGTAKLARNSEFQALLPIRGKILNVQKSSVTDMLKNAECGAIIQVIGAG-SGRTFDID 547
Query: 568 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
A RY KII++TDADVDG+HIRTLLLT F+RY + + + G ++ VPPL+++
Sbjct: 548 AARYGKIIMMTDADVDGSHIRTLLLTLFHRYMRPMVEAGRVFAAVPPLHRI 598
Score = 403 (146.9 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 102/261 (39%), Positives = 136/261 (52%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + + VLEGLEAVRKRP MYIGST RGL H ++EI+DN+VDEA GY +IEV L
Sbjct: 23 YTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGYCDHIEVILHD 82
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
D SV V DNGRGIP+D+ P T S +E V+T LHA
Sbjct: 83 DASVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGKFGGGAYAASGGLHGVGASVV-- 140
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCH----------VLPVDS--KDRQGTRI 244
NALS L++ V G + + RG P T + V K R+GTR+
Sbjct: 141 NALSARLDIEVDLGGHTHAISFRRGVPGTFAKAGPDAKFEAGSGLRKVKKVPKSRRGTRV 200
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS--DPEKNQYNEYFFAGG 302
R+W D+Q+F + + + R R+ AFL P LTI +R E D + F GG
Sbjct: 201 RYWADRQIFLKDAKLSLDNLHQRARQTAFLVPGLTIVVRDEFGLGDGGSKGEESFRFDGG 260
Query: 303 LEEYVQWLNTDKKPLHDVVGF 323
+ E+ ++L D+ P+ DV+ F
Sbjct: 261 ISEFCEFLAGDR-PVCDVLRF 280
>UNIPROTKB|Q89M38 [details] [associations]
symbol:gyrB "DNA gyrase subunit B" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 GO:GO:0006265
EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055 HSSP:P06982
RefSeq:NP_770995.1 ProteinModelPortal:Q89M38 GeneID:1052126
KEGG:bja:bll4355 PATRIC:21192268
BioCyc:BJAP224911:GJEJ-4381-MONOMER Uniprot:Q89M38
Length = 681
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 215/554 (38%), Positives = 306/554 (55%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + I+VLEGLE VR+RP MYIG T + LHHL E++DN++DEA AG+A+ I V L A
Sbjct: 38 YTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHATFIGVELSA 97
Query: 137 DNSVSVADNGRGIPIDLHPA-TNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
D ++V DNGRGIPID HP KSALE ++ LH+
Sbjct: 98 DGFLTVTDNGRGIPIDPHPKFPKKSALEVIMCTLHSGGKFDSKVYETSGGLHGVGISVV- 156
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS LEV V R Y + RG P L + +++ R+GTR+RF PD +F
Sbjct: 157 -NALSSLLEVEVARSQKLYRMTFERGHPKGKLE-DLGKINN--RRGTRVRFKPDTDIFGA 212
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIA-------LRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
F + R A+L + I L+ D P + ++ F GGL++Y+
Sbjct: 213 KAAFKPQRLFKMTRSKAYLFGGVEIRWNCAPELLKGIDDVPAEATFH---FPGGLKDYLA 269
Query: 309 W-LNTDKKPLHDVVGFRKDVDGI--TIDLALQWCSDAYSDTMLG-YANSIRTIDGGTHIE 364
++ D D+ + +G + A+ W +DA D L Y N++ T DGGTH
Sbjct: 270 AAIHADTLVHPDIFSGKSGRNGAHGACEWAVAWTADA--DGFLSSYTNTVPTPDGGTHES 327
Query: 365 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNP 424
G++++L R L ++ K + S++ E V G ++SV V PEF+GQTK RL
Sbjct: 328 GLRSALLRGLKDHAERVGQGK-RASSITSEDVMVGAAVMLSVFVREPEFQGQTKDRLATA 386
Query: 425 EVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSL 484
E +++V+Q++++ +L +P+ R K+ + L
Sbjct: 387 EAQRIVEQAMKDPFDHWLSGNPNQANKLLDFVIDRAEERLRRRQEKETAR-KTAGKKLRL 445
Query: 485 PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
PGKLADCS E SE+FIVEGDSAGGSAKQ RDR+ QA+LPLRGKILNV + +
Sbjct: 446 PGKLADCSDAGTEGSELFIVEGDSAGGSAKQARDRKTQAVLPLRGKILNVASAGKDKLTA 505
Query: 545 NEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD 604
N ++ +L++A+G G + +++E LRY +III+TDADVDGAHI +LL+TFFYR L D
Sbjct: 506 NAQLSDLVQAIGCGTLAQ-YREEDLRYQRIIIMTDADVDGAHIASLLITFFYRQMPRLID 564
Query: 605 EGCIYVGVPPLYKV 618
EG +++ VPPLYK+
Sbjct: 565 EGHLFLAVPPLYKL 578
>TIGR_CMR|SPO_1253 [details] [associations]
symbol:SPO_1253 "DNA topoisomerase IV, B subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 OMA:GFIQSYC TIGRFAMs:TIGR01055
RefSeq:YP_166498.1 ProteinModelPortal:Q5LU07 GeneID:3192730
KEGG:sil:SPO1253 PATRIC:23375809 Uniprot:Q5LU07
Length = 652
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 207/552 (37%), Positives = 305/552 (55%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
TY + I+VLEGLE VRKRP MYIG T R LHH+V E+LDN++DEA AG+A+ IEV L
Sbjct: 13 TYDASSIEVLEGLEPVRKRPGMYIGGTDERALHHMVAEVLDNSMDEAVAGFANRIEVELH 72
Query: 136 ADNSVSVADNGRGIPIDLHPA-TNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
AD +++V DNGRGIP+D HP KSALE +L LHA
Sbjct: 73 ADYALTVRDNGRGIPVDPHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASVV 132
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLT-CHVLPVDSKDRQGTRIRFWPDKQVF 253
NALS+S+ V V RD + Y Q++SRG P+ + P +R+GT + F D+++F
Sbjct: 133 --NALSDSMVVQVARDKLLYEQRFSRGLPLGPIQQIGAAP----NRRGTTVTFHADEEIF 186
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWL--- 310
+F + IR A+L + I + D E + F GGL +Y++
Sbjct: 187 GHH-RFKPARLFKSIRSKAYLFSGVEIRWKSAIDDGETPTEATFHFPGGLADYLKETLGK 245
Query: 311 -NT-DKKPLHDVVGFRK--DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
+T ++P V F + + G ++ A+ W + + + Y N++ T +GGTH G
Sbjct: 246 ASTYAEQPFAGTVDFTEKFNTPG-KVEWAINW-TPSRDGFIQSYCNTVPTPEGGTHEAGF 303
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
+++ + + + G+ K I+ + + G ++S + PEF GQTK RL E
Sbjct: 304 WSAILKGIRAYGELISNKKAAQITR--DDLLTGGCALVSCFIREPEFVGQTKDRLATVEA 361
Query: 427 RKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG 486
+++V+ +V+++ +L ++K+ + LPG
Sbjct: 362 QRLVEGAVRDHFDNWLAADTK-SAGAILDFLVLRAEERIRRRQEKETQRKTATKKLRLPG 420
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 546
KL DCS+T+ E +E+FIVEGDSAGGSAK RDR+ QA+LPLRGKILNV + + N+
Sbjct: 421 KLVDCSATSREGTELFIVEGDSAGGSAKMARDRKTQALLPLRGKILNVLGAASSKLGSNQ 480
Query: 547 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 606
EI +L +ALG+G+ G F + LRY KIII+TDADVDGAHI LL+TFF+ + + D G
Sbjct: 481 EISDLTQALGVGL-GTRFNVDDLRYDKIIIMTDADVDGAHIAALLMTFFFTQMRPMIDTG 539
Query: 607 CIYVGVPPLYKV 618
+Y+ PPLY++
Sbjct: 540 HLYLACPPLYRL 551
>UNIPROTKB|A6VD80 [details] [associations]
symbol:parE "DNA topoisomerase IV, B subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 eggNOG:COG0187
Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:YP_001351015.1
ProteinModelPortal:A6VD80 SMR:A6VD80 STRING:A6VD80 GeneID:5355906
KEGG:pap:PSPA7_5696 PATRIC:19832877 OMA:QARDKEF
BioCyc:PAER381754:GHMY-5702-MONOMER Uniprot:A6VD80
Length = 629
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 188/545 (34%), Positives = 282/545 (51%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
TY ++ I+VL GL+ VRKRP MY +T P +HL E++DN+VDEA AG+A +++V L
Sbjct: 3 TYNADAIEVLSGLDPVRKRPGMYTDTTRP---NHLAQEVIDNSVDEALAGHAKSVQVILH 59
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXX 195
DNS+ V D+GRG+P+D+HP +E +LT LHA
Sbjct: 60 QDNSLEVIDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV- 118
Query: 196 XNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALS +EV V RD EY ++ G T L V+ + GT + FWPD + F +
Sbjct: 119 -NALSTRVEVRVKRDANEYRMTFADGFKDTDL--EVIGTVGRRNTGTSVHFWPDPKYFDS 175
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
A +F + + ++ A L P L++ D + E+ F GL Y+ +
Sbjct: 176 A-KFSVSRLKHVLKAKAVLCPGLSVVFE----DKNTGERVEWHFEDGLRSYLTDAVAELP 230
Query: 316 PLHDVVGFRKDVDGI--TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
L D F +++G + AL W + Y N I T GGTH+ G++ L
Sbjct: 231 RLPDEP-FCGNLEGSKEAVSWALLWLPEGGESVQESYVNLIPTAQGGTHVNGLRQGLLDA 289
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+ + + + + + L+ E V E + ++S+++ P+F GQTK RL + E V
Sbjct: 290 MREFCE-FRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGV 348
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSS 493
V++ + +L H ++ V +K + + +LPGKLADC+
Sbjct: 349 VKDAFSLWLNEHAEIGLQLAELAISNAGRRLKAGKK---VERKKITQGPALPGKLADCAG 405
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
P +E+F+VEGDSAGGSAKQ RD+ FQAI+PLRGKILN D + ++E+ ++
Sbjct: 406 QEPMRAELFLVEGDSAGGSAKQARDKEFQAIMPLRGKILNTWEVDGGEVLASQEVHDIAV 465
Query: 554 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613
A+G+ D + LRY KI IL DAD DG HI TLL F R+ + L + G +YV +P
Sbjct: 466 AIGVDPGASDLAQ--LRYGKICILADADSDGLHIATLLCALFVRHFRPLVEAGHVYVAMP 523
Query: 614 PLYKV 618
PLY++
Sbjct: 524 PLYRI 528
>TIGR_CMR|SO_3899 [details] [associations]
symbol:SO_3899 "DNA topoisomerase IV, B subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:QARDKEF
RefSeq:NP_719430.1 ProteinModelPortal:Q8EAK3 SMR:Q8EAK3
GeneID:1171539 KEGG:son:SO_3899 PATRIC:23527480 Uniprot:Q8EAK3
Length = 628
Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
Identities = 188/549 (34%), Positives = 283/549 (51%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
++ Y S+ I+VL GL+ V++RP MY +T P +HL E++DN+VDEA AG+A+ IEV
Sbjct: 1 MTNQYTSDAIEVLNGLDPVKRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHATKIEV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L DNS+ V D+GRG+P+D+HP +E +LT LHA
Sbjct: 58 VLHTDNSLEVTDDGRGMPVDIHPEEGIPGVELILTKLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS +EVTV RDG Y + G V L V + GTR+ FWPD
Sbjct: 118 VV--NALSRRVEVTVRRDGQVYDIAFENGFKVEELK--VTGTCGRRNTGTRVHFWPDTSY 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F + F ++ + +R A L P L I + + N+ +E+++ GL +Y++
Sbjct: 174 FDSP-NFSNSKLIYLLRAKAVLCPGLRIKFTNKHT----NEVHEWYYESGLTDYLKAAVG 228
Query: 313 DK--KPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
D P +G F+ ++ D A+ W + Y N I T GGTH+ G +
Sbjct: 229 DNIMLPEEPFIGSFKGQIEAA--DWAITWLPEGGESINESYVNLIPTPLGGTHVNGFRQG 286
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L ++ + + + I LS E + + I+SV++ +P+F GQTK +L + +
Sbjct: 287 LLESMREFCEFRNLIP-RGIKLSPEDIWDRAAFILSVKMQDPQFAGQTKEKLSSRQSSAF 345
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L + ++ V +K V +LPGKL
Sbjct: 346 VSGIVRDAFSLWLNSNTELAESLAEMCINNAQKRLKAAKK---VARKKVTSGPALPGKLT 402
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DCS P E+F+VEGDSAGGSAKQ RDR FQAI+PLRGKILN D + + ++E+
Sbjct: 403 DCSGQDPMRGELFLVEGDSAGGSAKQARDREFQAIMPLRGKILNTWEVDASQVLASQEVH 462
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
++ A+G D + LRY KI IL DAD DG HI TLL F ++ + L ++G +Y
Sbjct: 463 DISVAIGCDPDSNDISE--LRYGKICILADADSDGLHIATLLCALFLKHYRVLVEQGHVY 520
Query: 610 VGVPPLYKV 618
+ +PPL+++
Sbjct: 521 IAMPPLFRI 529
>TIGR_CMR|CBU_0064 [details] [associations]
symbol:CBU_0064 "DNA topoisomerase IV, B subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR001241
InterPro:IPR002288 InterPro:IPR003594 InterPro:IPR005737
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075154 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 RefSeq:NP_819117.2
ProteinModelPortal:Q83F84 PRIDE:Q83F84 GeneID:1207934
KEGG:cbu:CBU_0064 PATRIC:17928803 OMA:GNVCVAR
BioCyc:CBUR227377:GJ7S-66-MONOMER Uniprot:Q83F84
Length = 641
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 192/549 (34%), Positives = 287/549 (52%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y +E I+VL GLE V++RP MY ++ P +HL +E +DN+VDEA AG+A N+EV L
Sbjct: 14 KGYTAEAIEVLSGLEPVKRRPGMYTDTSRP---NHLAHEAIDNSVDEAIAGFAQNVEVIL 70
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXX 194
D S+ V D+GRG+PID+HP + +E +LT LHA
Sbjct: 71 YKDGSLEVIDDGRGMPIDVHPEHKLTGVELILTRLHAGAKFSTKTYEYSGGLHGVGISVV 130
Query: 195 XXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQV 252
NALS+ L V V +DG Y ++ G+ + L PV S K GT I FWPD
Sbjct: 131 --NALSKKLTVQVKKDGKIYQMDFAHGEKTSKLR----PVGSCNKSESGTSIHFWPDSHY 184
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F + ++F + + +R A L P LT+ E++ Q ++++A GL+ Y+
Sbjct: 185 FDS-VKFGVSALKHTMRAKAVLCPGLTVHFIDENT----GQRLQWYYAEGLKTYLADSLR 239
Query: 313 DKKPLHDV--VG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
D++ L + VG F + + D AL W + Y N I T GGTH+ G++
Sbjct: 240 DRERLPEEPWVGSFSGETE--KADWALAWLPEDDEGIRESYVNLIPTPQGGTHVNGLRTG 297
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L + + K + +++ L+ E + E ++SV++ P+F GQTK RL + +
Sbjct: 298 LLEAMREFCEIHKLLP-RNLKLASEDIWEQCHYVLSVKMQEPQFSGQTKERLTSRQSAVF 356
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L + ++ + +K V +LPGKLA
Sbjct: 357 VSGVVKDAFSLWLNHNVEIGKTLAELVIANAQKRLRMSKK---IERKKVTTGPALPGKLA 413
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC + P + E+F+VEGDSAGGSAKQ RD+ FQAI+PLRGKILN D + ++ +
Sbjct: 414 DCILSDPMQCELFLVEGDSAGGSAKQARDKNFQAIMPLRGKILNTWEVDTEQVLASQTVH 473
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
++ A+ +GV + E LRY KI IL DAD DG HI TLL F ++ L G +Y
Sbjct: 474 DI--AIAIGVDPDSSNLEGLRYGKICILADADSDGYHIATLLCALFMKHFYPLVVSGHVY 531
Query: 610 VGVPPLYKV 618
V +PPLY++
Sbjct: 532 VAMPPLYRI 540
>UNIPROTKB|P20083 [details] [associations]
symbol:parE species:83333 "Escherichia coli K-12"
[GO:0030541 "plasmid partitioning" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0007062 "sister
chromatid cohesion" evidence=IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046677 GO:GO:0006261 EMBL:U28377
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000075154 GO:GO:0030541 KO:K02622 ProtClustDB:PRK05559
EMBL:M58409 EMBL:L22026 PIR:D65090 RefSeq:NP_417502.1
RefSeq:YP_491222.1 PDB:1S14 PDB:1S16 PDB:3FV5 PDBsum:1S14
PDBsum:1S16 PDBsum:3FV5 ProteinModelPortal:P20083 SMR:P20083
DIP:DIP-10441N IntAct:P20083 MINT:MINT-1223307 PRIDE:P20083
EnsemblBacteria:EBESCT00000001166 EnsemblBacteria:EBESCT00000016957
GeneID:12933399 GeneID:947501 KEGG:ecj:Y75_p2956 KEGG:eco:b3030
PATRIC:32121470 EchoBASE:EB0681 EcoGene:EG10687 OMA:GFIQSYC
BioCyc:EcoCyc:EG10687-MONOMER BioCyc:ECOL316407:JW2998-MONOMER
BindingDB:P20083 EvolutionaryTrace:P20083 Genevestigator:P20083
HAMAP:MF_00938 TIGRFAMs:TIGR01055 Uniprot:P20083
Length = 630
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 187/547 (34%), Positives = 286/547 (52%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++TY ++ I+VL GLE VR+RP MY +T P +HL E++DN+VDEA AG+A ++V
Sbjct: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L AD S+ V D+GRG+P+D+HP A+E +L LHA
Sbjct: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ +EV V RDG Y+ + G+ V L V+ K GT + FWPD+
Sbjct: 118 VV--NALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDETF 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F + +F + + ++ A L P + I + E ++ E+ + L E V L T
Sbjct: 174 FDSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232
Query: 313 -DKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 371
+KP + F D + + D AL W + Y N I T+ GGTH+ G++ L
Sbjct: 233 LPEKPF--IGNFAGDTEAV--DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288
Query: 372 RTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVD 431
+ + + + + + LS E + + ++SV++ +P+F GQTK RL + + V
Sbjct: 289 DAMREFCEY-RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347
Query: 432 QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC 491
V++ L L+ +V VR+K + +LPGKLADC
Sbjct: 348 GVVKDAFI--LWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADC 404
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551
++ +E+F+VEGDSAGGSAKQ RDR +QAI+PL+GKILN + ++E+ ++
Sbjct: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464
Query: 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 611
A+G+ +D + LRY KI IL DAD DG HI TLL F ++ + L G +YV
Sbjct: 465 SVAIGIDPDSDDLSQ--LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522
Query: 612 VPPLYKV 618
+PPLY++
Sbjct: 523 LPPLYRI 529
>UNIPROTKB|Q9KPD9 [details] [associations]
symbol:VC_2431 "Topoisomerase IV, subunit B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR005737 InterPro:IPR013506
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0006265
GO:GO:0003918 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K02622
ProtClustDB:PRK05559 TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR
PIR:G82078 RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 189/549 (34%), Positives = 278/549 (50%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++ Y + I+VL GLE VR+RP MY +T P +HL E++DN+VDEA AGYAS I+V
Sbjct: 1 MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGYASKIQV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L AD S+ V D+GRG+P+D+HP S +E +L LHA
Sbjct: 58 ILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ +EV V RDG Y + G VT LT V + GT + FWPD +
Sbjct: 118 VV--NALSKRVEVAVRRDGQVYEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKY 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--L 310
F + F + + +R A L P L I +D N + + + GL++Y+
Sbjct: 174 FDSP-NFSVSRLINNLRAKAVLCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVK 228
Query: 311 NTDKKPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
P G F + T A+ W + Y N I T GGTH+ G++
Sbjct: 229 GYTLLPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L + + + + + + L+GE V + ++S+++ +P+F GQTK RL + +
Sbjct: 287 LLDAMREFCE-FRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAF 345
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L P + VR+K + +LPGKL
Sbjct: 346 VSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLT 402
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC+ +E+F+VEGDSAGGSAKQ RDR FQA++PLRGKILN + ++E+
Sbjct: 403 DCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVH 462
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
++ ALG+ ++ EALRY K+ IL DAD DG HI TLL F R+ + L G +Y
Sbjct: 463 DISVALGIDPDSDNL--EALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVY 520
Query: 610 VGVPPLYKV 618
V +PPLY++
Sbjct: 521 VAMPPLYRI 529
>TIGR_CMR|VC_2431 [details] [associations]
symbol:VC_2431 "topoisomerase IV, subunit B" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR005737 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719
Gene3D:3.40.50.670 KO:K02622 ProtClustDB:PRK05559
TIGRFAMs:TIGR01055 HSSP:P06982 OMA:GNVCVAR PIR:G82078
RefSeq:NP_232061.1 ProteinModelPortal:Q9KPD9 SMR:Q9KPD9
DNASU:2612973 GeneID:2612973 KEGG:vch:VC2431 PATRIC:20083881
GO:GO:0009340 Uniprot:Q9KPD9
Length = 626
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 189/549 (34%), Positives = 278/549 (50%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+++ Y + I+VL GLE VR+RP MY +T P +HL E++DN+VDEA AGYAS I+V
Sbjct: 1 MTEQYNAGAIEVLNGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGYASKIQV 57
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXX 192
L AD S+ V D+GRG+P+D+HP S +E +L LHA
Sbjct: 58 ILHADQSLEVIDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGIS 117
Query: 193 XXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
NALS+ +EV V RDG Y + G VT LT V + GT + FWPD +
Sbjct: 118 VV--NALSKRVEVAVRRDGQVYEIAFEHGDKVTELT--VTGTCGRRNTGTSVHFWPDTKY 173
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQW--L 310
F + F + + +R A L P L I +D N + + + GL++Y+
Sbjct: 174 FDSP-NFSVSRLINNLRAKAVLCPGLEIIF----TDKVNNNEHRWLYEDGLKDYLAEGVK 228
Query: 311 NTDKKPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
P G F + T A+ W + Y N I T GGTH+ G++
Sbjct: 229 GYTLLPEEPFTGEFTAQTEAAT--WAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQG 286
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
L + + + + + + L+GE V + ++S+++ +P+F GQTK RL + +
Sbjct: 287 LLDAMREFCE-FRNLLPRGVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAF 345
Query: 430 VDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLA 489
V V++ + +L P + VR+K + +LPGKL
Sbjct: 346 VSGVVKDAFSLWLNEKPQLAEQLAEVCIANAHSRMRASKKV--VRKK-IASGPALPGKLT 402
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC+ +E+F+VEGDSAGGSAKQ RDR FQA++PLRGKILN + ++E+
Sbjct: 403 DCTVQDLNRTELFLVEGDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVH 462
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
++ ALG+ ++ EALRY K+ IL DAD DG HI TLL F R+ + L G +Y
Sbjct: 463 DISVALGIDPDSDNL--EALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVY 520
Query: 610 VGVPPLYKV 618
V +PPLY++
Sbjct: 521 VAMPPLYRI 529
>TAIR|locus:2146658 [details] [associations]
symbol:GYRB3 "DNA GYRASE B3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0003916 "DNA topoisomerase
activity" evidence=IGI] InterPro:IPR001005 InterPro:IPR001241
InterPro:IPR013506 Pfam:PF00204 SMART:SM00433 SMART:SM00717
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0003682 GO:GO:0006261 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 eggNOG:COG0187 KO:K02470 EMBL:AY074291
EMBL:AY091322 EMBL:AY519549 IPI:IPI00536772 RefSeq:NP_196031.2
UniGene:At.33174 ProteinModelPortal:Q8VY11 SMR:Q8VY11
EnsemblPlants:AT5G04110.1 GeneID:830289 KEGG:ath:AT5G04110
TAIR:At5g04110 InParanoid:Q8VY11 Genevestigator:Q8VY11
Uniprot:Q8VY11
Length = 546
Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
Identities = 138/252 (54%), Positives = 170/252 (67%)
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
L ++T++L ED+DP K EY +A GL E+V WLN DKKPLHDV+GFRK+++G TI+
Sbjct: 17 LRVQITVSLEMEDNDPNK----EYLYAKGLSEFVTWLNADKKPLHDVLGFRKEINGTTIN 72
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
+ALQWC D YS+ +LGYAN IRT+DGGT+I+GVKAS+TRTLNSL +KSK V+DKDI +
Sbjct: 73 IALQWCVDGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTE 132
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXX 453
EHV EGLTCI+SV VP PEFEGQT+ RLGNP VR++VDQSVQE L E ELHPDV
Sbjct: 133 EHVMEGLTCIVSVIVPKPEFEGQTQ-RLGNPNVREIVDQSVQECLMESFELHPDVFESIM 191
Query: 454 XXXXXXXXXXXXXXXXXXXVRQKSVLRS---SSLPGKLADCSSTTPEESEIFIVEGDSAG 510
+SV S+P KL + SS T SE FI G S+G
Sbjct: 192 SKSYNAYKTDLAVKRARDVYSSESVAMVCAIESIPMKLTNSSSET---SETFIGRGVSSG 248
Query: 511 GSAKQGRDRRFQ 522
G+AK DR F+
Sbjct: 249 GAAKHDSDRCFK 260
>UNIPROTKB|Q8A3C1 [details] [associations]
symbol:BT_3033 "DNA topoisomerase IV subunit B"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] InterPro:IPR001241 InterPro:IPR002288
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00986
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 EMBL:AE015928
GenomeReviews:AE015928_GR GO:GO:0009295 GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 Gene3D:3.40.50.670 HOGENOM:HOG000075156 KO:K02622
ProtClustDB:PRK05559 HSSP:P06982 OMA:VFESQTK RefSeq:NP_811945.1
ProteinModelPortal:Q8A3C1 GeneID:1074020 KEGG:bth:BT_3033
PATRIC:21061047 BioCyc:BTHE226186:GJXV-3097-MONOMER Uniprot:Q8A3C1
Length = 625
Score = 338 (124.0 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 102/306 (33%), Positives = 144/306 (47%)
Query: 329 GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 388
G I++A Y + + N T GGTH K + RT+ K+ D
Sbjct: 243 GEDIEIAFTHTGQ-YGEEYYSFVNGQHTTQGGTHQSAFKEHIARTIKEFFNKNMDYTD-- 299
Query: 389 ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE-------VRKVVDQSVQEYLTEY 441
+R GL I+V V P FE QTKT+LG+ V K V ++ + +
Sbjct: 300 -------IRNGLVAAIAVNVEEPIFESQTKTKLGSTNMTPGGVTVNKYVGDFIKLEVDNF 352
Query: 442 LELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG-KLADCSS--TTP-- 496
L + DV R+++ + ++L KL DC P
Sbjct: 353 LHKNADVAEVMQQKIQESEKERKAIAGVTKLARERA--KKANLHNRKLRDCRIHLNDPKG 410
Query: 497 ----EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
E+S IFI EGDSA GS + RD QA+ LRGK LN + +Y+NEE NL+
Sbjct: 411 KGMEEDSCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEF-NLL 469
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
+A L + ED E LRY+K+I+ TDADVDG HIR LL+TFF ++ L +G +Y+
Sbjct: 470 QA-ALNI--ED-GIEGLRYNKVIVATDADVDGMHIRLLLITFFLQFFPDLIKKGHVYILQ 525
Query: 613 PPLYKV 618
PL++V
Sbjct: 526 TPLFRV 531
Score = 178 (67.7 bits), Expect = 2.3e-42, Sum P(2) = 2.3e-42
Identities = 63/216 (29%), Positives = 93/216 (43%)
Query: 70 ENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----GLHHLVYEILDNAVDEAQA 124
+N + Y + I+ L +E VR RP MYIG G G++ L+ E++DN++DE +
Sbjct: 10 DNNNAVEYTDDNIRHLSDMEHVRTRPGMYIGRLGDGAHAEDGIYVLLKEVIDNSIDEFKM 69
Query: 125 GYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXX 184
IE+ + + VSV D GRGIP + L ++VL+
Sbjct: 70 QAGKKIEITVEENLRVSVRDYGRGIP--------QGKLVEAVSVLNTGGKYDSKAFKKSV 121
Query: 185 XXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244
NALS EV +RDG +S+G T +T D+++ GT I
Sbjct: 122 GLNGVGVKAV--NALSSRFEVRSYRDGKVRIATFSKGNLQTDVT-----QDTEEDNGTFI 174
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTI 280
F PD +F F I +R +LN L I
Sbjct: 175 FFEPDNTLFVNYC-FKPEFIETMLRNYTYLNTGLAI 209
>UNIPROTKB|Q3KL33 [details] [associations]
symbol:gyrB_2 "DNA gyrase subunit B" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002288 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
Pfam:PF00204 Pfam:PF00986 Pfam:PF02518 PRINTS:PR00418 SMART:SM00387
SMART:SM00433 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 GO:GO:0003918
SUPFAM:SSF56719 eggNOG:COG0187 KO:K02470 Gene3D:3.40.50.670
HOGENOM:HOG000075156 ProtClustDB:PRK05559 RefSeq:YP_328487.1
ProteinModelPortal:Q3KL33 STRING:Q3KL33 GeneID:3687725
KEGG:cta:CTA_0718 PATRIC:32023360 OMA:VFESQTK
BioCyc:CTRA315277:GI4C-739-MONOMER Uniprot:Q3KL33
Length = 605
Score = 344 (126.2 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 93/293 (31%), Positives = 143/293 (48%)
Query: 333 DLALQWC-SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391
DLA + ++ S+ + N T DGGTH+ K + + +N K+
Sbjct: 234 DLAFLFSHTETSSEQYFSFVNGQETTDGGTHLVAFKEGIVKGVNEFFGKN---------F 284
Query: 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXX 451
S + +REGL I++++ +P FE QTK +LGN +R + + V+E + L+ +P
Sbjct: 285 SSQDIREGLAGCIAIKIASPIFESQTKNKLGNTNIRAELAKRVKEAVLSSLKKNPSSAER 344
Query: 452 XXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADC------SSTTPEESEIFIVE 505
++ K +P KL DC +S + S IFI E
Sbjct: 345 IQEKIKLNEKTRKNAQFLKQELKDKQKKLHYKIP-KLRDCKFHLTDNSLYGKNSSIFITE 403
Query: 506 GDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFK 565
G+SA S R+ QA+ LRGK +NV E +YKN+E+ L ALGL +D
Sbjct: 404 GESASASILASRNPLTQAVFSLRGKPMNVFSSKEETIYKNDELFYLTTALGLH---KD-S 459
Query: 566 KEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
+ LRY+++I+ TDADVDG HIR L++TFF + L +++ PL+KV
Sbjct: 460 LQNLRYNQVILATDADVDGMHIRNLMITFFLKTFLPLVASNHLFILETPLFKV 512
Score = 156 (60.0 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 58/217 (26%), Positives = 88/217 (40%)
Query: 75 KT-YGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----GLHHLVYEILDNAVDEAQAGYAS 128
KT Y I L L+ +R R MYIG G G++ L E++DNA+DE GY
Sbjct: 4 KTAYSESSIISLASLDHIRLRAGMYIGRLGDGSQAEDGIYTLFKEVVDNAIDEFVMGYGH 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXX 188
I + A + +S+ D GRGIP+ ++ V +
Sbjct: 64 TIHITGDA-HELSIRDEGRGIPLG-------KVIDCVSKI---NTGAKYTQDVFHFSVGL 112
Query: 189 XXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
NALS+ V R+ +S+G + H ++D GT + F P
Sbjct: 113 NGVGLKAVNALSQHFSVRSVRNKKFLKASFSKG-----ILLHTEQGATQDPDGTEVVFSP 167
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE 285
D ++F F + +IR+ +L+P LTI E
Sbjct: 168 DHELFEN-FSFQVEFLKKKIRQYTYLHPGLTIIYNGE 203
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 352 (129.0 bits), Expect = 7.5e-29, P = 7.5e-29
Identities = 138/553 (24%), Positives = 232/553 (41%)
Query: 93 KRPAMYIG---STGPRGLHHLVYEILDNAVDEAQA-GYASNIEVALLA-DNSVSVADNGR 147
K+P YI +T GL + EIL NA D + S I+V + +NS+S+ ++G+
Sbjct: 156 KKPLTYIHPIKATYIPGLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGK 215
Query: 148 GIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTV 207
GIP+ +H N +E V+ L + + ++E
Sbjct: 216 GIPVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVD 275
Query: 208 WRDGMEYHQKYS-----RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 262
G +Y Q++S R +P+ T P+ + T+I F PD + F +D N
Sbjct: 276 KSSGKKYFQRWSNNMGDRSEPIIT------PIGEGESDYTKITFKPDLEKFKIKSLWDDN 329
Query: 263 TIA---GRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD 319
+ R+ ++A N +L + L + ++ YN F ++ Y LN K +
Sbjct: 330 ILQLMERRLYDIAGCNTELMVTL-----NGKRLNYN---FQSYVKLYEHHLNNSTKREDN 381
Query: 320 VVGFRKDVDGITIDLALQW-----CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
+R++ +++ +W S+ T + + NSI T+ GGTH+ + + R +
Sbjct: 382 EEQYREESFEFG-EISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVRYV 440
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN-PEVRKVVDQS 433
G+K K K D+ + +++ L ++ V NP F+ Q+K L P + +
Sbjct: 441 ---GEKLKK-KHSDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEI 496
Query: 434 VQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCS- 492
+ L ++++ + RQ S+ KL D +
Sbjct: 497 PESLLAQFVKNSKIIERVAGWALMKQKADLIHSTSG----RQSKTTLIKSI-SKLDDANW 551
Query: 493 --STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEE 547
+E + I EGDSA A G R + PLRGK+LNV + NEE
Sbjct: 552 AGGLKSKECTLIITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEE 611
Query: 548 IQNLIRALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD 604
I NL LGL K D E LRY +++I+ D D DG+HI+ L++ F + + L
Sbjct: 612 INNLTTILGLSHKNSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLK 671
Query: 605 EGCIYVGVPPLYK 617
G + V P+ K
Sbjct: 672 RGFLVEFVTPIIK 684
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 217 (81.4 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 50/128 (39%), Positives = 75/128 (58%)
Query: 495 TPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551
T E+ + + EGDSA A G + R + PL+GK+LNV D+A KNEEI NL
Sbjct: 471 TAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNL 530
Query: 552 IRALGLGVKGED-FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIY 609
+R LGL + + +E+LRY +++IL D D DG+HI+ L++ F +++ +L +G I
Sbjct: 531 LRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQ 590
Query: 610 VGVPPLYK 617
PL K
Sbjct: 591 SFRTPLLK 598
Score = 137 (53.3 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 81/328 (24%), Positives = 131/328 (39%)
Query: 102 TGPRGLHHLVYEILDNAVD-EAQAGYASNIEVALLADNS-VSVADNGRGIPIDLHPATNK 159
T P GL + EIL NA D +A+ + +EV L + + +SV +NG G+P+++HP T
Sbjct: 91 TYPPGLLKIFDEILVNAADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHP-TEG 149
Query: 160 SALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEV-TV-WRDGMEYHQK 217
+ T L + N S+ V TV R + QK
Sbjct: 150 IYVPT-LVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQK 208
Query: 218 -YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFL 274
Y K V +D + T++ F PD + F D + I R+ E+A
Sbjct: 209 WYDNMKKCNEAEV-VEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAAT 267
Query: 275 NPK-LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
P+ + + L + D + G E+YV+ N L R V G+
Sbjct: 268 LPRDVDVYLNGQKCDVD-----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKR 315
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
S ++ + N+I T GG+H++ V + + + SK + D S+
Sbjct: 316 NNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKP 373
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRL 421
++ L+ I+ + NP FE QTK L
Sbjct: 374 AVIKNNLSIFINCLIENPSFESQTKETL 401
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 217 (81.4 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 50/128 (39%), Positives = 75/128 (58%)
Query: 495 TPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551
T E+ + + EGDSA A G + R + PL+GK+LNV D+A KNEEI NL
Sbjct: 471 TAEKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNL 530
Query: 552 IRALGLGVKGED-FKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIY 609
+R LGL + + +E+LRY +++IL D D DG+HI+ L++ F +++ +L +G I
Sbjct: 531 LRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQ 590
Query: 610 VGVPPLYK 617
PL K
Sbjct: 591 SFRTPLLK 598
Score = 137 (53.3 bits), Expect = 3.9e-23, Sum P(2) = 3.9e-23
Identities = 81/328 (24%), Positives = 131/328 (39%)
Query: 102 TGPRGLHHLVYEILDNAVD-EAQAGYASNIEVALLADNS-VSVADNGRGIPIDLHPATNK 159
T P GL + EIL NA D +A+ + +EV L + + +SV +NG G+P+++HP T
Sbjct: 91 TYPPGLLKIFDEILVNAADNKARDSSMNRLEVWLDRETARISVWNNGSGLPVEIHP-TEG 149
Query: 160 SALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEV-TV-WRDGMEYHQK 217
+ T L + N S+ V TV R + QK
Sbjct: 150 IYVPT-LVFGNLFTSSNYDDSEIKTVGGRNGYGAKLCNIFSKEFIVETVDTRIKRRFRQK 208
Query: 218 -YSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFL 274
Y K V +D + T++ F PD + F D + I R+ E+A
Sbjct: 209 WYDNMKKCNEAEV-VEILDETVKDYTKVEFVPDLERFQIDKLSDDVIDLIGRRVFEVAAT 267
Query: 275 NPK-LTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
P+ + + L + D + G E+YV+ N L R V G+
Sbjct: 268 LPRDVDVYLNGQKCDVD-----------GFEDYVKMFNDSSSLLFLHPTPRWHV-GVAKR 315
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
S ++ + N+I T GG+H++ V + + + SK + D S+
Sbjct: 316 NNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPI-VDSK-LGDPTKSVKP 373
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRL 421
++ L+ I+ + NP FE QTK L
Sbjct: 374 AVIKNNLSIFINCLIENPSFESQTKETL 401
>UNIPROTKB|Q8EYL9 [details] [associations]
symbol:LA_4194 "DNA gyrase subunit B" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR001241 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211 GO:GO:0009295
GO:GO:0006265 GO:GO:0003918 SUPFAM:SSF56719 KO:K02470
Gene3D:3.40.50.670 EMBL:AE010300 GenomeReviews:AE010300_GR
HSSP:P06786 RefSeq:NP_714374.1 ProteinModelPortal:Q8EYL9
GeneID:1153536 KEGG:lil:LA_4194 PATRIC:22389227
HOGENOM:HOG000040411 OMA:EATIESK ProtClustDB:CLSK575166
BioCyc:LINT189518:GJBB-3320-MONOMER Uniprot:Q8EYL9
Length = 711
Score = 282 (104.3 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 103/405 (25%), Positives = 182/405 (44%)
Query: 229 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT-IAGRIRELAFLNPKLT--IALRKE 285
C++L D D+ ++ +++ A + DH T + + F N ++ + L K+
Sbjct: 218 CNLLTKDQIDKLSPLLKKTNMQELIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQ 277
Query: 286 D-SDPEKNQYN---EYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKD--VDGITIDLALQW 338
D ++ F G E+Y D+ H D+V ++ D G L L+
Sbjct: 278 YLQDIAMTNPGLEVQFVFKGKKEKYKFKKGLDEIFSHSDLVYYKMDYVAPGSASQLHLET 337
Query: 339 CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK-DKDISLSGEH-- 395
+ L + NSI GG+ IE ++ R + + KKS+ V +K + S
Sbjct: 338 YLVIGQNKNLTWVNSIFAPQGGSAIEYLE---NRICDEVRKKSQIVALEKKLKTSSTRND 394
Query: 396 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXX 455
VR ++ R+ NP F+ Q K+ L N ++ + + +V ++L ++++
Sbjct: 395 VRNCFHMYVNARLLNPRFKSQDKSYLIN-DLNEDIRNAVDKHLDKFIK-------KTGLL 446
Query: 456 XXXXXXXXXXXXXXXXXVRQKSVLRSS--SLPGKLADCSSTTPEESEIFIVEGDSAGGSA 513
QK + ++S ++P + +F+ EGDSA
Sbjct: 447 EEIKLQMEKRTQLKAFEDAQKGLKKASRMNIPKLMPPTGKQGDPGRVLFVAEGDSAIAGL 506
Query: 514 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 573
+ R+ + + PLRGK LN + A NEE++N++ +GL + + + L Y K
Sbjct: 507 RPARNPKLHGLFPLRGKPLNCKGLSIAKAIANEELKNIVAIVGLPLDQKVKSLDELNYEK 566
Query: 574 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
+ I+TDAD DG IR+L+L+FFY Y LF+ G I++ PLY+V
Sbjct: 567 VSIITDADFDGYAIRSLMLSFFYEYWPELFELGFIHISSAPLYEV 611
Score = 58 (25.5 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 128 SNIEVALLADNS-VSVADNGRGIP 150
S + V L +D V++ADNGRGIP
Sbjct: 100 SKLIVQLSSDRKCVTIADNGRGIP 123
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 276 (102.2 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 144/547 (26%), Positives = 219/547 (40%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVAL-LADNSVSVADNGRGIPIDLHPATNKSALE 163
GL + EI+ NA D + + IEV + +N + V ++G GIPI++H E
Sbjct: 62 GLFKIFDEIIVNAADNKVRDPSMKKIEVVINREENYIEVKNDGNGIPIEVHAKEGIYIPE 121
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSES--LEVTVWRDGMEYHQKYSRG 221
+ H N S LE + + G +Y QK+
Sbjct: 122 LIFG--HLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTEFILETSDPKSGQKYVQKWESN 179
Query: 222 KPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLT 279
V CH + S K T+I F PD Q F + D I G +R + +
Sbjct: 180 MNV----CHPPKITSYKKGPSYTKITFKPDLQRFGMEVLDDD--ILGVMRRRVY---DIN 230
Query: 280 IALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKD-----VDGITI-- 332
++R + F +E Y++ L +KK L D G + V+ TI
Sbjct: 231 GSVRDVNVSLNGKSLKIRNFKSYMELYMRSL--EKKRLIDS-GMAPESASEKVNAPTILY 287
Query: 333 -DLALQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKASLTRTLNSL-GKKSKTVKD 386
+ +W A SD + + NSI T GGTH+ + + + ++ L KK KTVK
Sbjct: 288 EKVNDRWELGFAVSDISFQQISFVNSIATTSGGTHVNYLTDQIVKKVSELLSKKKKTVKP 347
Query: 387 KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHP 446
I R + I+ + NP F QTK +L V+++ ++ E+
Sbjct: 348 FQI-------RNNIFIFINCLIENPAFTSQTKEQLTT---------RVRDFGSK-CEVSS 390
Query: 447 DVXXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPG--KLADCSSTTPEESE---I 501
D ++Q R + + KL D + +E +
Sbjct: 391 DFINKIMKTELATKIFEIADENAAKLLKQTDGTRKNRITDYPKLEDANKAGTKEGHKCTL 450
Query: 502 FIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG 556
+ EGDSA G + GRD + PL+GKILNV + KN EIQ + + +G
Sbjct: 451 VLTEGDSALSLAVAGLSVVGRD--YYGCFPLKGKILNVRDASVEQIRKNTEIQAIKKIMG 508
Query: 557 LGVKG----EDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVG 611
L K ED K LRY ++I+TD D DG+HI+ LL+ FF L D G +
Sbjct: 509 LQHKKQYTIEDMK--TLRYGHVMIMTDQDHDGSHIKGLLINFFESTFPGLLDIPGFLIEF 566
Query: 612 VPPLYKV 618
+ P+ KV
Sbjct: 567 ITPIMKV 573
Score = 69 (29.3 bits), Expect = 2.4e-22, Sum P(2) = 2.4e-22
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
KE S+TY Q + LE + KRP YIGS + H V++ + + E Q
Sbjct: 7 KEKNASETY-----QKITQLEHILKRPDTYIGSVEMQDFHMWVHDAEMDCMVEKQVNIVP 61
Query: 129 NIEVALLADNSVSVADN 145
+ + + V+ ADN
Sbjct: 62 GL-FKIFDEIIVNAADN 77
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 282 (104.3 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 139/541 (25%), Positives = 224/541 (41%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALE 163
GL + EIL NA D + + I+V + A+ +++ V ++G+GIPI++H N E
Sbjct: 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPE 118
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSES--LEVTVWRDGMEYHQKYSRG 221
+ H N S LE G +Y QK+
Sbjct: 119 MIFG--HLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENN 176
Query: 222 KPVTTLTCHVLPVDS--KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF-LNPKL 278
+ CH + S K T++ F PD F + D N I G +R + +N +
Sbjct: 177 MSI----CHPPKITSYKKGPSYTKVTFKPDLTRFGMK-ELD-NDILGVMRRRVYDINGSV 230
Query: 279 T-IALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRK-DVDGITID-LA 335
I + + + Y +E Y++ L ++ + G K D+ I + +
Sbjct: 231 RDINVYLNGKSLKIRNFKNY-----VELYLKSLEKKRQLDNGEDGAAKSDIPTILYERIN 285
Query: 336 LQW-CSDAYSDT---MLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391
+W + A SD + + NSI T GGTH+ + + + ++ + KK K K
Sbjct: 286 NRWEVAFAVSDISFQQISFVNSIATTMGGTHVNYITDQIVKKISEILKKKKKKSVKSFQ- 344
Query: 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ-EYLTEYLE--LHPDV 448
++ + I+ + NP F QTK +L +V D + E EY+ + D+
Sbjct: 345 ----IKNNMFIFINCLIENPAFTSQTKEQL----TTRVKDFGSRCEIPLEYINKIMKTDL 396
Query: 449 XXXXXXXXXXXXXXXXXXXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEES---EIFIVE 505
+KS R ++ P KL D + +E + + E
Sbjct: 397 ATRMFEIADANEENALKKSDGT----RKS--RITNYP-KLEDANKAGTKEGYKCTLVLTE 449
Query: 506 GDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLG-- 558
GDSA G A GRD + PLRGK+LNV + KN EIQ + + +GL
Sbjct: 450 GDSALSLAVAGLAVVGRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHR 507
Query: 559 VKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYK 617
K ED K +LRY ++I+TD D DG+HI+ L++ F L D +G + + P+ K
Sbjct: 508 KKYEDTK--SLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIK 565
Query: 618 V 618
V
Sbjct: 566 V 566
Score = 56 (24.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 72 PVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIE 131
PVS S++ Q + LE + KRP YIGS + +Y+ + + E +
Sbjct: 5 PVS---ASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGL- 60
Query: 132 VALLADNSVSVADN 145
+ + V+ ADN
Sbjct: 61 FKIFDEILVNAADN 74
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 193 (73.0 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 46/136 (33%), Positives = 76/136 (55%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D S +E + + EGDSA G + GRDR + PL+GK+LNV +
Sbjct: 490 DAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDR--YGVFPLKGKLLNVRDASFKQLMD 547
Query: 545 NEEIQNLIRALGLGVKGEDFKK-EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLF 603
N+EIQN+ + +GL + ++ + + LRY ++I+TD D DG+HI+ LL+ +++ +L
Sbjct: 548 NKEIQNIFKIMGLDITDKNKQDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLL 607
Query: 604 D-EGCIYVGVPPLYKV 618
+G + V P+ KV
Sbjct: 608 KHKGFLCEFVTPIVKV 623
Score = 113 (44.8 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 340 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 399
+D + + NSI T GGTH+ + L LNSL KK+ + + H+R
Sbjct: 344 TDGSQFQQVSFVNSICTTKGGTHVSYIVDQL---LNSLSKKANAKNKGGMEIKAGHIRNH 400
Query: 400 LTCIISVRVPNPEFEGQTKTRLGNPEVR 427
L ++ + NP F+ QTK L + +
Sbjct: 401 LWVFVNCLIVNPTFDSQTKETLTTKQAK 428
Score = 65 (27.9 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASN-----IEVALLADNS-VSVADNGRGIPIDLHPATN 158
GL+ + EI+ NA D +A+ S I++ + + +SV ++G GIP+D+H N
Sbjct: 58 GLYKIFDEIIVNAADVKAREKEKSENPMTCIKIEINREQKKISVYNDGEGIPVDIHKEMN 117
Score = 43 (20.2 bits), Expect = 0.00074, Sum P(4) = 0.00073
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 556 GLGVKGE-DFKK--EALRYHKIIILTDADVDGAHI 587
GLG + +FK+ ++ HKI L D DG I
Sbjct: 657 GLGTSTDKEFKQYFSDIQSHKIFFLWTGDRDGDSI 691
Score = 39 (18.8 bits), Expect = 2.6e-19, Sum P(4) = 2.6e-19
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGS 101
+KT E+ Q +E + RP YIGS
Sbjct: 4 NKTI-EERYQKKSQIEHILLRPDTYIGS 30
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 200 (75.5 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 56/154 (36%), Positives = 82/154 (53%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 454 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 511
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 512 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 571
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 572 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 605
Score = 83 (34.3 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 315 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
K +H+VV R DV L + + + NSI T GG H++ V + L
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 375 NSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
+ KK K+K +S+ V+ + ++ + NP F+ QTK +
Sbjct: 364 IEVVKK----KNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENM 407
Score = 70 (29.7 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I++++ + N +S+ +NG+GIP+ H
Sbjct: 106 GLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEH 156
Score = 56 (24.8 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
+E+ +N SK E++ Q LE + RP YIGS P
Sbjct: 42 SESVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEP 82
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 200 (75.5 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 56/154 (36%), Positives = 82/154 (53%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 454 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 511
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 512 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 571
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 572 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 605
Score = 83 (34.3 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 29/108 (26%), Positives = 48/108 (44%)
Query: 315 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
K +H+VV R DV L + + + NSI T GG H++ V + L
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 375 NSLGKKSKTVKDK-DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
+ KK K+K +S+ V+ + ++ + NP F+ QTK +
Sbjct: 364 IEVVKK----KNKAGVSVKPFQVKNHIWVFVNCLIENPSFDSQTKENM 407
Score = 70 (29.7 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I++++ + N +S+ +NG+GIP+ H
Sbjct: 106 GLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEH 156
Score = 56 (24.8 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
+E+ +N SK E++ Q LE + RP YIGS P
Sbjct: 42 SESVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEP 82
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 200 (75.5 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 56/154 (36%), Positives = 82/154 (53%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 456 SSVKHSKIKGIPKLDDANDAGGKHSLDCTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 513
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 514 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYEDPESLKSLRYGKIMIMTDQDQD 573
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 574 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 607
Score = 83 (34.3 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 315 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT-RT 373
K +H+VV R DV L + + + NSI T GG H++ V + +
Sbjct: 313 KVIHEVVNERWDV-------CLTLSEKGFQQ--ISFVNSIATTKGGRHVDYVVDQVVGKL 363
Query: 374 LNSLGKKSKT-VKDKDISLSG-EHVREGLTCIISVRVPNPEFEGQTKTRL 421
+ + KK+K V K S H+ + C+I NP F+ QTK +
Sbjct: 364 IEVVKKKNKAGVSVKPFQASNFNHIWVFVNCLIE----NPSFDSQTKENM 409
Score = 70 (29.7 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I++++ + N +S+ +NG+GIP+ H
Sbjct: 106 GLYKIFDEILVNAADNKQRDKNMTCIKISIDPESNIISIWNNGKGIPVVEH 156
Score = 56 (24.8 bits), Expect = 4.2e-19, Sum P(4) = 4.2e-19
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
+E+ +N SK E++ Q LE + RP YIGS P
Sbjct: 42 SESVNKNDTSKKMSVERVYQKKTQLEHILLRPDTYIGSVEP 82
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 197 (74.4 bits), Expect = 9.4e-19, Sum P(3) = 9.4e-19
Identities = 52/138 (37%), Positives = 71/138 (51%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 444 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 501
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 502 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 560
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 561 SLLRHRFLEEFITPIVKV 578
Score = 86 (35.3 bits), Expect = 9.4e-19, Sum P(3) = 9.4e-19
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V ++ +N +S+ +NG+GIP+ H
Sbjct: 79 GLYKIFDEILVNAADNKQRDPKMSCIRVTMMRNNLISIWNNGKGIPVVEH 128
Score = 79 (32.9 bits), Expect = 9.4e-19, Sum P(3) = 9.4e-19
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +++ + V+ + +
Sbjct: 309 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKADQVKNHMWIFGNA 364
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 365 VIENPTFDSQTKENM 379
Score = 38 (18.4 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYA 127
K K E+I Q LE + RP YIGS VY+ D ++ + +
Sbjct: 19 KNEDGKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDE-DVGINYREVTFV 77
Query: 128 SNIEVALLADNSVSVADNGRGIP 150
+ + + V+ ADN + P
Sbjct: 78 PGL-YKIFDEILVNAADNKQRDP 99
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 178 (67.7 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 46/128 (35%), Positives = 69/128 (53%)
Query: 480 RSSSLPG--KLADCSSTTPEES---EIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKI 531
+SS + G KL D + + S + + EGDSA A G R + PLRGK+
Sbjct: 411 KSSKIKGIPKLEDANEAGGKNSIKCTLILTEGDSAKSLAVSGLGVIGRDLYGVFPLRGKL 470
Query: 532 LNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE---ALRYHKIIILTDADVDGAHIR 588
LNV + + +N EI NL + +GL K + ++ LRY K++I+TD D DG+HI+
Sbjct: 471 LNVREANFKQLSENAEINNLCKIIGLQYKKKYLTEDDLKTLRYGKVMIMTDQDQDGSHIK 530
Query: 589 TLLLTFFY 596
LL+ F +
Sbjct: 531 GLLINFIH 538
Score = 136 (52.9 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 84/332 (25%), Positives = 137/332 (41%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D Q + N I++ + + N VSV +NG+GIP+ +H K +
Sbjct: 61 GLYKIFDEILVNAADNKQRDKSMNTIKIDIDPERNMVSVWNNGQGIPVTMHKE-QKMYVP 119
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEV-TVWRDGMEYHQKYSR-- 220
T++ H N S S V T R EY + + +
Sbjct: 120 TMIFG-HLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSTSFTVETATR---EYKKSFKQTW 175
Query: 221 GKPVTTLTCHVLPVDSKDRQGT---RIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFL 274
G + + V KD GT RI F PD F + D + +A R ++A
Sbjct: 176 GNNMGKAS----DVQIKDFNGTDYTRITFSPDLAKFKMD-RLDEDIVALMSRRAYDVAAS 230
Query: 275 NPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP----LHDVVGFRKDVDGI 330
+ +++ L +N + +Y ++ +++ + D P +H+V R +V
Sbjct: 231 SKGVSVFLNGNKLGV-RN-FKDY-----IDLHIKNTDDDSGPPIKIVHEVANERWEVACC 283
Query: 331 TIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDI 389
D Q S + NSI T GG H++ V +L + L L KK+K I
Sbjct: 284 PSDRGFQQVS---------FVNSIATYKGGRHVDHVVDNLIKQLLEVLKKKNKG----GI 330
Query: 390 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
++ VR L ++ + NP F+ QTK +
Sbjct: 331 NIKPFQVRNHLWVFVNCLIENPTFDSQTKENM 362
Score = 48 (22.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 24/92 (26%), Positives = 38/92 (41%)
Query: 74 SKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+K EQ+ Q LE + RP YIGS VY+ N + + + + +
Sbjct: 5 NKALSIEQMYQKKSQLEHILLRPDSYIGSVEFTKELMWVYDNSQNRMVQKEISFVPGL-Y 63
Query: 133 ALLADNSVSVADNGRG------IPIDLHPATN 158
+ + V+ ADN + I ID+ P N
Sbjct: 64 KIFDEILVNAADNKQRDKSMNTIKIDIDPERN 95
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 505 EGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 539
E +S+GG+ K+ ++ +A++ + ++ D+
Sbjct: 1406 EDESSGGAKKKAPPKKRRAVIESDDDDIEIDEDDD 1440
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 250 (93.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 93/384 (24%), Positives = 171/384 (44%)
Query: 233 PVDSKDRQG---TRIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFLNPKLTIALRKED 286
P +K +QG TR+ F PD F +++ +A R+ ++A K T+ + +
Sbjct: 201 PQITKCKQGENWTRVTFKPDLAKFNMT-HLENDVVALMRKRVVDMAGTLGK-TVKVELDH 258
Query: 287 SDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDT 346
+ +++Y ++ Y++ + D+ ++++ + V+ ++ + +
Sbjct: 259 QKVPVHSFSDY-----VKLYIKSASKDRDDVNELPSISQKVND-RWEVCVSLSEGQFQQ- 311
Query: 347 MLGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 405
+ + N I TI GGTH++ V + T +N + K++K K +V+ L ++
Sbjct: 312 -VSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKNAHMK-----AHNVKSHLWVFVN 365
Query: 406 VRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXX 465
+ NP F+ QTK L R+ S E ++L+
Sbjct: 366 ALIDNPAFDSQTKETL---TTRQASFGSKCELSDDFLKKVGSSAIVLNLLSWAEFKLSKE 422
Query: 466 XXXXXXXVRQKSVLRSSSLPGKLADCSSTTPEESE---IFIVEGDSAGGSAKQGRD---R 519
R R + +P KL D + ++S + + EGDSA A G R
Sbjct: 423 LQKTDGSKRS----RLTGIP-KLEDANGAGGKDSNNCTLILTEGDSAKALAMAGISVVGR 477
Query: 520 RFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKK-EALRYHKIIILT 578
+ + PLRGK+LNV + +N EIQN+ + LGL G+ + + LRY ++I+T
Sbjct: 478 DYYGVFPLRGKLLNVREASHKQIMENAEIQNIKQILGLQ-HGKQYDSTKGLRYGHLMIMT 536
Query: 579 DADVDGAHIRTLLLTFFYRYQKTL 602
D D DG+HI+ LL+ F + + +L
Sbjct: 537 DQDHDGSHIKGLLINFIHSFWPSL 560
Score = 158 (60.7 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 71/327 (21%), Positives = 135/327 (41%)
Query: 106 GLHHLVYEILDNAVDEAQAGYA-SNIEVALLADNS-VSVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D Q + ++ V + AD +SV +NG GIP+++H E
Sbjct: 77 GLYKIFDEILVNAADNKQRDPSMDSLRVEIDADEGRISVYNNGDGIPVEIHQEEGVYVPE 136
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSES--LEVTVWRDGMEYHQKYSRG 221
+ H N S +E R +Y Q +S
Sbjct: 137 MIFG--HLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFVIETADGRRQKKYKQVFSEN 194
Query: 222 KPVTTLTCHVLPVDSKDRQG---TRIRFWPDKQVFTTAIQFDHNTIA---GRIRELAFLN 275
+ P +K +QG TR+ F PD F +++ +A R+ ++A
Sbjct: 195 MGKKSE-----PQITKCKQGENWTRVTFKPDLAKFNMT-HLENDVVALMRKRVVDMAGTL 248
Query: 276 PKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLA 335
K T+ + + + +++Y ++ Y++ + D+ ++++ + V+ ++
Sbjct: 249 GK-TVKVELDHQKVPVHSFSDY-----VKLYIKSASKDRDDVNELPSISQKVND-RWEVC 301
Query: 336 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGE 394
+ + + + N I TI GGTH++ V + T +N + K++K K
Sbjct: 302 VSLSEGQFQQ--VSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKNAHMK-----AH 354
Query: 395 HVREGLTCIISVRVPNPEFEGQTKTRL 421
+V+ L ++ + NP F+ QTK L
Sbjct: 355 NVKSHLWVFVNALIDNPAFDSQTKETL 381
Score = 55 (24.4 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 27/92 (29%), Positives = 34/92 (36%)
Query: 59 LSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNA 118
L SS A KT E Q LE + RP YIGS VYE D A
Sbjct: 10 LQSSSGHNAAAGGGGGKTI-EEMYQKKTQLEHILLRPDTYIGSVEKHTAQLWVYE--DGA 66
Query: 119 VDEAQAGYASNIEVALLADNSVSVADNGRGIP 150
+ Y + + + V+ ADN + P
Sbjct: 67 MVSRSVTYVPGL-YKIFDEILVNAADNKQRDP 97
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 184 (69.8 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 50/156 (32%), Positives = 81/156 (51%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++S L G KL D + + S+ + + EGDSA G + GRD+ + P
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFP 520
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-----EDFKKEALRYHKIIILTDAD 581
LRGK+LNV + + N E+ +I+ LGL K +DFK LRY K++++ D D
Sbjct: 521 LRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK--TLRYGKLMVMADQD 578
Query: 582 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
DG+HI+ L++ F + + +L + + P+ K
Sbjct: 579 QDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVK 614
Score = 92 (37.4 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 291
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 292 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 351
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 352 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 409
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 410 NPEFEGQTK 418
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
Score = 83 (34.3 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q N I++ + + N +SV +NG+GIP+ H
Sbjct: 115 GLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQH 165
Score = 53 (23.7 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 62 SIATEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHL-VYEILDNAV 119
++ T K+ SK E I Q LE + RP YIGS + VY + ++ +
Sbjct: 46 NVFTSIDKKGGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKL 105
Query: 120 DEAQAGYASNIEVALLADNSVSVADNGRGIP 150
++ Y + + + V+ ADN + P
Sbjct: 106 EQRDISYVPGL-YKIYDEILVNAADNKQRDP 135
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 184 (69.8 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 50/156 (32%), Positives = 81/156 (51%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++S L G KL D + + S+ + + EGDSA G + GRD+ + P
Sbjct: 463 SKTKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFP 520
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-----EDFKKEALRYHKIIILTDAD 581
LRGK+LNV + + N E+ +I+ LGL K +DFK LRY K++++ D D
Sbjct: 521 LRGKLLNVREGNMKQIADNAEVNAMIKILGLQYKKKYETEDDFK--TLRYGKLMVMADQD 578
Query: 582 VDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
DG+HI+ L++ F + + +L + + P+ K
Sbjct: 579 QDGSHIKGLVINFIHHFWPSLIQRNFVEEFITPIVK 614
Score = 92 (37.4 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 43/189 (22%), Positives = 84/189 (44%)
Query: 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDH--NTIAGRIRELAFLNPKLTIALRKEDSDPEK 291
V S D T+I F PD F D + +A R ++A + + + L + P K
Sbjct: 242 VKSTDEDFTKITFSPDLAKFKMKELDDDICHLMARRAYDVAGSSKGVAVFLNGKRI-PIK 300
Query: 292 NQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYA 351
+ +Y ++ Y N + +PL + + + D + LAL + + +
Sbjct: 301 G-FEDY-----VQMYTSQFNNEGEPLK--IAYEQVGDRWQVALALS--EKGFQQ--VSFV 348
Query: 352 NSIRTIDGGTHIEGVKASLT-RTLNSLGKK-SKTVKDKDISLSGEHVREGLTCIISVRVP 409
NSI T GG H++ V + + ++S+ +K +KT +++ ++ + ++ +
Sbjct: 349 NSIATTKGGRHVDYVADQMVAKFIDSIKRKLTKT----SMNIKPFQIKNHMWVFVNCLIE 404
Query: 410 NPEFEGQTK 418
NP F+ QTK
Sbjct: 405 NPTFDSQTK 413
Score = 83 (34.3 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q N I++ + + N +SV +NG+GIP+ H
Sbjct: 115 GLYKIYDEILVNAADNKQRDPKMNTIKITINKEKNEISVYNNGKGIPVTQH 165
Score = 53 (23.7 bits), Expect = 2.7e-15, Sum P(3) = 2.7e-15
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 62 SIATEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHL-VYEILDNAV 119
++ T K+ SK E I Q LE + RP YIGS + VY + ++ +
Sbjct: 46 NVFTSIDKKGGGSKQMAIEDIYQKKSQLEHILLRPDTYIGSVEHTEKTPMWVYNMEESKL 105
Query: 120 DEAQAGYASNIEVALLADNSVSVADNGRGIP 150
++ Y + + + V+ ADN + P
Sbjct: 106 EQRDISYVPGL-YKIYDEILVNAADNKQRDP 135
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 197 (74.4 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 52/138 (37%), Positives = 71/138 (51%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 562 SLLRHRFLEEFITPIVKV 579
Score = 85 (35.0 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 365
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 366 LIENPTFDSQTKENM 380
Score = 76 (31.8 bits), Expect = 2.4e-18, Sum P(3) = 2.4e-18
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNSV-SVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + +N+V S+ +NG+GIP+ H
Sbjct: 79 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNVISIWNNGKGIPVVEH 129
Score = 38 (18.4 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYA 127
K K E+I Q LE + RP YIGS VY+ D ++ + +
Sbjct: 19 KNEDGKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDE-DVGINYREVTFV 77
Query: 128 SNIEVALLADNSVSVADNGRGIP 150
+ + + V+ ADN + P
Sbjct: 78 PGL-YKIFDEILVNAADNKQRDP 99
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 197 (74.4 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 55/154 (35%), Positives = 81/154 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 426 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 483
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 484 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 543
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 544 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 577
Score = 81 (33.6 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 309 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 364
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 365 LIENPTFDSQTKENM 379
Score = 71 (30.1 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I+V++ + N +S+ +NG+GIP+ H
Sbjct: 78 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH 128
Score = 52 (23.4 bits), Expect = 2.7e-18, Sum P(4) = 2.7e-18
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
+E +N SK E++ Q LE + RP YIGS P
Sbjct: 14 SETANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEP 54
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 197 (74.4 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 55/154 (35%), Positives = 81/154 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 441 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 498
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 499 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 558
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 559 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 592
Score = 81 (33.6 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 324 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 379
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 380 LIENPTFDSQTKENM 394
Score = 71 (30.1 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I+V++ + N +S+ +NG+GIP+ H
Sbjct: 93 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH 143
Score = 52 (23.4 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
+E +N SK E++ Q LE + RP YIGS P
Sbjct: 29 SETANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEP 69
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 195 (73.7 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 55/154 (35%), Positives = 82/154 (53%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 448 SSVKHSKIKGIPKLDDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 505
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ LGL K +D + ++LRY +I+I+TD D D
Sbjct: 506 LRGKILNVREATHKQIMENAEINNIIKILGLQYKKSYDDPESLKSLRYGRIMIMTDQDQD 565
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ FF+ +L + + P+ K
Sbjct: 566 GSHIKGLLINFFHHNWPSLLKHTFLEEFITPIVK 599
Score = 84 (34.6 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG HI+ + + L + KK K+K +S+ V+ L ++
Sbjct: 331 ISFVNSIATTKGGRHIDYIVDQIVGKLIEVVKK----KNKAGVSVKPFQVKNHLWVFVNA 386
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 387 LIENPTFDSQTKENM 401
Score = 76 (31.8 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 106 GLHHLVYEILDNAVDEAQAGY-ASNIEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q + I++ + + N++SV +NG+GIP+ H
Sbjct: 100 GLYKIFDEILVNAADNKQRDKNMTTIKITIDPESNTISVWNNGKGIPVVEH 150
Score = 46 (21.3 bits), Expect = 3.0e-18, Sum P(4) = 3.0e-18
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
+E K+ SK E+I Q LE + RP YIGS P
Sbjct: 37 SEVVKKES-SKKMSVERIYQKKTQLEHILLRPDTYIGSVEP 76
Score = 37 (18.1 bits), Expect = 2.5e-14, Sum P(4) = 2.5e-14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 132 VALLADNSVSVADNGRGIPIDLH 154
VALL + VA + RG+ + L+
Sbjct: 256 VALLTRRAYDVAGSCRGVKVILN 278
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 197 (74.4 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 52/138 (37%), Positives = 71/138 (51%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 562 SLLRHRFLEEFITPIVKV 579
Score = 85 (35.0 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 365
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 366 LIENPTFDSQTKENM 380
Score = 75 (31.5 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + +N+ +S+ +NG+GIP+ H
Sbjct: 79 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEH 129
Score = 41 (19.5 bits), Expect = 9.2e-15, Sum P(3) = 9.2e-15
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYA 127
K K E+I Q LE + RP YIGS VY+ D ++ + +
Sbjct: 19 KNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDE-DVGINYREVTFV 77
Query: 128 SNIEVALLADNSVSVADNGRGIP 150
+ + + V+ ADN + P
Sbjct: 78 PGL-YKIFDEILVNAADNKQRDP 99
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 197 (74.4 bits), Expect = 3.4e-18, Sum P(4) = 3.4e-18
Identities = 55/154 (35%), Positives = 81/154 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 428 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 485
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 486 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 545
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 546 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 579
Score = 81 (33.6 bits), Expect = 3.4e-18, Sum P(4) = 3.4e-18
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 311 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 366
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
Score = 71 (30.1 bits), Expect = 3.4e-18, Sum P(4) = 3.4e-18
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I+V++ + N +S+ +NG+GIP+ H
Sbjct: 78 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH 128
Score = 51 (23.0 bits), Expect = 3.4e-18, Sum P(4) = 3.4e-18
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
+E +N SK E++ Q LE + RP YIGS P
Sbjct: 14 SEIANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEP 54
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 197 (74.4 bits), Expect = 3.5e-18, Sum P(4) = 3.5e-18
Identities = 55/154 (35%), Positives = 81/154 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 437 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 494
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 495 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 554
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 555 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 588
Score = 81 (33.6 bits), Expect = 3.5e-18, Sum P(4) = 3.5e-18
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 320 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 375
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 376 LIENPTFDSQTKENM 390
Score = 71 (30.1 bits), Expect = 3.5e-18, Sum P(4) = 3.5e-18
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I+V++ + N +S+ +NG+GIP+ H
Sbjct: 89 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH 139
Score = 51 (23.0 bits), Expect = 3.5e-18, Sum P(4) = 3.5e-18
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 66 EAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
E +N SK E++ Q LE + RP YIGS P
Sbjct: 26 ETSNKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEP 65
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 197 (74.4 bits), Expect = 5.6e-18, Sum P(4) = 5.6e-18
Identities = 55/154 (35%), Positives = 81/154 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 437 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 494
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 495 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 554
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 555 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 588
Score = 82 (33.9 bits), Expect = 5.6e-18, Sum P(4) = 5.6e-18
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 320 ISFVNSIATTKGGRHVDYVVDQVVSKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 375
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 376 LIENPTFDSQTKENM 390
Score = 71 (30.1 bits), Expect = 5.6e-18, Sum P(4) = 5.6e-18
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I+V++ + N +S+ +NG+GIP+ H
Sbjct: 89 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH 139
Score = 48 (22.0 bits), Expect = 5.6e-18, Sum P(4) = 5.6e-18
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 66 EAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
E +N +K E++ Q LE + RP YIGS P
Sbjct: 26 ETANKNDSTKKLSVERVYQKKTQLEHILLRPDTYIGSVEP 65
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 193 (73.0 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 51/138 (36%), Positives = 70/138 (50%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 563 SLLRHRFLEEFITPIVKV 580
Score = 86 (35.3 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
Score = 75 (31.5 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + +N+ +S+ +NG+GIP+ H
Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEH 130
Score = 43 (20.2 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 24/100 (24%), Positives = 41/100 (41%)
Query: 53 VLPRAFLSSSIATEAFKENP-VSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHL 110
V P ++ ++ K+N K E+I Q LE + RP YIGS
Sbjct: 3 VSPLQPVNENMQVNKIKKNEDAKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMW 62
Query: 111 VYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIP 150
VY+ D ++ + + + + + V+ ADN + P
Sbjct: 63 VYDE-DVGINYREVTFVPGL-YKIFDEILVNAADNKQRDP 100
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 197 (74.4 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
Identities = 55/154 (35%), Positives = 81/154 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 444 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 501
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 502 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 561
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 562 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 595
Score = 81 (33.6 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 327 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 382
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 383 LIENPTFDSQTKENM 397
Score = 71 (30.1 bits), Expect = 7.2e-18, Sum P(3) = 7.2e-18
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I+V++ + N +S+ +NG+GIP+ H
Sbjct: 96 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH 146
Score = 54 (24.1 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYE 113
+E +N SK E++ Q LE + RP YIGS P VY+
Sbjct: 32 SETANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYD 81
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 193 (73.0 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 51/138 (36%), Positives = 70/138 (50%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 563 SLLRHRFLEEFITPIVKV 580
Score = 86 (35.3 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
Score = 74 (31.1 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I + + +N+ +S+ +NG+GIP+ H
Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRITIDPENNLISIWNNGKGIPVVEH 130
Score = 47 (21.6 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 22/83 (26%), Positives = 33/83 (39%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYA 127
K K E+I Q LE + RP YIGS VY+ D ++ + Y
Sbjct: 20 KNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDE-DIGINYREVTYV 78
Query: 128 SNIEVALLADNSVSVADNGRGIP 150
+ + + V+ ADN + P
Sbjct: 79 PGL-YKIFDEILVNAADNKQRDP 100
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 193 (73.0 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 51/138 (36%), Positives = 70/138 (50%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 446 DAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 503
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 504 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 563 SLLRHRFLEEFITPIVKV 580
Score = 85 (35.0 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD-ISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYVADQIVAKLVDVVKK----KNKGGVAVKAHQVKNHMWIFVNA 366
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 367 LIENPTFDSQTKENM 381
Score = 75 (31.5 bits), Expect = 8.6e-18, Sum P(3) = 8.6e-18
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + +N+ +S+ +NG+GIP+ H
Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEH 130
Score = 43 (20.2 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYA 127
K K E+I Q LE + RP YIGS VY+ D ++ + +
Sbjct: 20 KNEEAKKRLSIERIYQKKTQLEHILLRPDTYIGSVESVTQQMWVYDE-DIGINYREVTFV 78
Query: 128 SNIEVALLADNSVSVADNGRGIP 150
+ + + V+ ADN + P
Sbjct: 79 PGL-YKIFDEILVNAADNKQRDP 100
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 224 (83.9 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 84/332 (25%), Positives = 142/332 (42%)
Query: 295 NEYFFAGGLEEYVQ-WLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANS 353
NE G ++YV+ +L +D KP + + D+A SD + + N+
Sbjct: 305 NERISISGFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFA-VSDGQFK-QVSFVNN 362
Query: 354 IRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEF 413
I TI GGTH+ V + ++ + KK ++K + ++ + ++ ++ NP F
Sbjct: 363 ISTIRGGTHVNYVANKIVDAIDEVVKK----ENKKAPVKAFQIKNYVQVFVNCQIENPSF 418
Query: 414 EGQTKTRLGNPEVRKVVDQSVQEYLTE-YLELHPDVXXXXXXXXXXXXXXXXXXXXXXXX 472
+ QTK L KV Q L++ +L+
Sbjct: 419 DSQTKETL----TTKVSAFGSQCTLSDKFLKAIKKSSVVEEVLKFATAKADQQLSKGDGG 474
Query: 473 VRQKSVLRSSSLPGKLADCSSTTPEESE---IFIVEGDSAGGSAKQGRD---RRFQAILP 526
+R R + L KL D + +ES + + EGDSA A G R + + P
Sbjct: 475 LRS----RITGLT-KLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFP 529
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAH 586
LRGK+LNV + + N+EIQ + + +G K + LRY ++I+TD D DG+H
Sbjct: 530 LRGKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSH 589
Query: 587 IRTLLLTFFYR-YQKTLFDEGCIYVGVPPLYK 617
I+ L++ + Y L G + + P+ K
Sbjct: 590 IKGLIINYLESSYPSLLQIPGFLIQFITPIIK 621
Score = 79 (32.9 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EI+ NA D + + + ++V L + N +S+ +NG+GIPI++H
Sbjct: 125 GLYKIFDEIIVNAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIH 175
Score = 64 (27.6 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN 138
S Q Q L E V +RP YIGS P V++ N +D Y + + +
Sbjct: 75 STQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGL-YKIFDEI 133
Query: 139 SVSVADN 145
V+ ADN
Sbjct: 134 IVNAADN 140
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 193 (73.0 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 49/137 (35%), Positives = 73/137 (53%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D S + + + EGDSA G GRD+ + PLRGK+LNV + +
Sbjct: 447 DAGSKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKMLNVREASHKQIME 504
Query: 545 NEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKT 601
N EI N+I+ +GL K ED + ++LRY KI+I+TD D DG+HI+ LL+ F + +
Sbjct: 505 NAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPS 564
Query: 602 LFDEGCIYVGVPPLYKV 618
L + + P+ KV
Sbjct: 565 LLRHNFLEEFITPIIKV 581
Score = 81 (33.6 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + T+ ++ + KK+K + + V+ + ++
Sbjct: 312 VSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNS 367
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 368 LIENPTFDSQTKENM 382
Score = 79 (32.9 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 106 GLHHLVYEILDNAVDEAQAGYA-SNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q + S I+V + +N+ +SV +NG+GIP+ H
Sbjct: 81 GLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEH 131
Score = 39 (18.8 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGS 101
K + K E+I Q LE + RP YIGS
Sbjct: 21 KADGAQKRLSVERIYQKKTQLEHILLRPDTYIGS 54
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 231 (86.4 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 76/284 (26%), Positives = 126/284 (44%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ + + T+ ++ + KK+K +++ V+ + ++
Sbjct: 311 ISFVNSIATSKGGRHVDYIADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 366
Query: 407 RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXX 466
+ NP F+ QTK + +V+ S + ++++
Sbjct: 367 LIENPTFDSQTKENM-TLQVKSF--GSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQL 423
Query: 467 XXXXXXVRQKSVLRSSSLPGKLADCSST---TPEESEIFIVEGDSA-----GGSAKQGRD 518
V+ R +P KL D + E + + EGDSA G GRD
Sbjct: 424 NKKCSAVKHN---RIKGIP-KLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRD 479
Query: 519 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKKEALRYHKI 574
+ + PLRGKILNV + +N EI N+I+ +GL K ED K LRY KI
Sbjct: 480 K--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLK-TLRYGKI 536
Query: 575 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
+I+TD D DG+HI+ LL+ F + +L + + P+ KV
Sbjct: 537 MIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKV 580
Score = 75 (31.5 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + +N+ +S+ +NG+GIP+ H
Sbjct: 80 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEH 130
Score = 40 (19.1 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGS 101
K K E+I Q LE + RP YIGS
Sbjct: 20 KNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGS 53
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 231 (86.4 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 76/284 (26%), Positives = 126/284 (44%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ + + T+ ++ + KK+K +++ V+ + ++
Sbjct: 320 ISFVNSIATSKGGRHVDYIADQIVTKLVDVVKKKNKG----GVAVKAHQVKNHMWIFVNA 375
Query: 407 RVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXX 466
+ NP F+ QTK + +V+ S + ++++
Sbjct: 376 LIENPTFDSQTKENM-TLQVKSF--GSTCQLSEKFIKAATGCGIVESILNWVKFKAQIQL 432
Query: 467 XXXXXXVRQKSVLRSSSLPGKLADCSST---TPEESEIFIVEGDSA-----GGSAKQGRD 518
V+ R +P KL D + E + + EGDSA G GRD
Sbjct: 433 NKKCSAVKHN---RIKGIP-KLDDANDAGGRNSNECTLILTEGDSAKTLAVSGLGVVGRD 488
Query: 519 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKKEALRYHKI 574
+ + PLRGKILNV + +N EI N+I+ +GL K ED K LRY KI
Sbjct: 489 K--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYDDEDSLK-TLRYGKI 545
Query: 575 IILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
+I+TD D DG+HI+ LL+ F + +L + + P+ KV
Sbjct: 546 MIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFLEEFITPIVKV 589
Score = 75 (31.5 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + +N+ +S+ +NG+GIP+ H
Sbjct: 89 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEH 139
Score = 40 (19.1 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGS 101
K K E+I Q LE + RP YIGS
Sbjct: 29 KNEDAKKRLSIERIYQKKTQLEHILLRPDTYIGS 62
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 197 (74.4 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 55/154 (35%), Positives = 81/154 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ S + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 449 SSVKYSKIKGIPKLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFP 506
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGKILNV + +N EI N+I+ +GL K +D + + LRY KI+I+TD D D
Sbjct: 507 LRGKILNVREASHKQIMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQD 566
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L G + + P+ K
Sbjct: 567 GSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVK 600
Score = 81 (33.6 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + L + KK K+K +S+ V+ + I+
Sbjct: 332 ISFVNSIATTKGGRHVDYVVDQVVGKLIEVVKK----KNKAGVSVKPFQVKNHIWVFINC 387
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 388 LIENPTFDSQTKENM 402
Score = 71 (30.1 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EIL NA D Q I+V++ + N +S+ +NG+GIP+ H
Sbjct: 101 GLYKIFDEILVNAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEH 151
Score = 54 (24.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 65 TEAFKENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYE 113
+E +N SK E++ Q LE + RP YIGS P VY+
Sbjct: 37 SETANKNDSSKKLSVERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYD 86
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 192 (72.6 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ + + G KL D + + S + + EGDSA G GRD+ + P
Sbjct: 429 SAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFP 486
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGK+LNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 487 LRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQD 546
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
G+HI+ LL+ F + +L + + P+ KV
Sbjct: 547 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKV 581
Score = 81 (33.6 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISV 406
+ + NSI T GG H++ V + T+ ++ + KK+K + + V+ + ++
Sbjct: 312 VSFVNSIATTKGGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNS 367
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 368 LIENPTFDSQTKENM 382
Score = 79 (32.9 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 106 GLHHLVYEILDNAVDEAQAGYA-SNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q + S I+V + +N+ +SV +NG+GIP+ H
Sbjct: 81 GLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEH 131
Score = 39 (18.8 bits), Expect = 2.7e-17, Sum P(4) = 2.7e-17
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGS 101
K + K E+I Q LE + RP YIGS
Sbjct: 21 KADGAQKRLSVERIYQKKTQLEHILLRPDTYIGS 54
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 205 (77.2 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 72/275 (26%), Positives = 118/275 (42%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 407
+ + NSI T GGTH++ + + + ++ K SK K ++ V+ L ++
Sbjct: 311 VSFVNSISTQKGGTHVDYIVNQVVK--HATEKLSKKTT-KTAAIKPAMVKNHLWVFLNCY 367
Query: 408 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXX 467
V NP F+ QTK L +R S E L+ +
Sbjct: 368 VENPAFDSQTKETL---TLRATAFGSKCELPVPLLD--KVLKAGLSDSIIRFAEFKSQKE 422
Query: 468 XXXXXVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRD---RRFQAI 524
++S L + D E + + EGDSA A G R +
Sbjct: 423 LKKGDGTKRSRLHGITKLDDANDAGGPRSRECTLILTEGDSAKALAISGLGVVGRDHYGV 482
Query: 525 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE-ALRYHKIIILTDADVD 583
PLRGK+LNV A + N EIQN+ + +GL G+ ++ +LRY ++I+TD D D
Sbjct: 483 FPLRGKLLNVREASAAQIAANAEIQNIKQIMGLQ-HGKVYENTTSLRYGHLMIMTDQDHD 541
Query: 584 GAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYK 617
G+HI+ L++ F + + +L G + + P+ K
Sbjct: 542 GSHIKGLIMNFLHSFFPSLLRIPGFLLEFITPIVK 576
Score = 93 (37.8 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 104 PRGLHHLVYEILDNAVD-EAQAGYASNIEVAL-LADNSVSVADNGRGIPIDLH 154
P GL+ + EIL NA D + + I+V + A NS+ V +NG+GIP+D+H
Sbjct: 66 PPGLYKIFDEILVNAADNKVRDATMDTIKVDIDAATNSIRVWNNGKGIPVDVH 118
Score = 56 (24.8 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 27/85 (31%), Positives = 37/85 (43%)
Query: 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNI-----EVAL 134
E Q LE + RP YIGST R +H V+ ++ Q Y + E+ +
Sbjct: 21 EMYQKKTQLEHIILRPDTYIGST-ERQPNH-VWVHTGQKMEYKQVSYPPGLYKIFDEILV 78
Query: 135 -LADNSVSVADNGRGIPIDLHPATN 158
ADN V A I +D+ ATN
Sbjct: 79 NAADNKVRDATMDT-IKVDIDAATN 102
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 177 (67.4 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 43/104 (41%), Positives = 61/104 (58%)
Query: 497 EESEIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
+E + + EGDSA G A GR D + PLRGK+LNV + KN+E++N+ +
Sbjct: 546 QECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRDASADQILKNKEVENIKK 605
Query: 554 ALGL--GVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFF 595
LGL G D K LRY ++I+ D D+DG+HI+ LL+ FF
Sbjct: 606 FLGLKHGKVYTDTKD--LRYGHLMIMADQDLDGSHIKGLLINFF 647
Score = 85 (35.0 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLADNS-VSVADNGRGIPIDLHPATNK 159
GL+ + EIL NA D +Q + ++V + ++ +SV +NG+GIP+++H T K
Sbjct: 178 GLYKIFDEILVNAADNSQRDSSMTFLKVTINRESGEISVENNGKGIPVEIH-GTEK 232
Score = 82 (33.9 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 340 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 398
SD S + + N+I T GG+H+ + + L L KK K K L +V+
Sbjct: 399 SDG-SFQQVSFVNNIATTSGGSHVNYIADQIIEVLMKELQKK----KGKGHGLKTANVKN 453
Query: 399 GLTCIISVRVPNPEFEGQTKTRL 421
I+ + NP F QTK +L
Sbjct: 454 QFFIFINCLIDNPAFSSQTKEQL 476
Score = 63 (27.2 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
K+ +KT +E Q L LE + KRP YIGS V+ ++ Q +
Sbjct: 119 KKTGAAKT-ATEMYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVP 177
Query: 129 NIEVALLADNSVSVADNGR 147
+ + + V+ ADN +
Sbjct: 178 GL-YKIFDEILVNAADNSQ 195
Score = 37 (18.1 bits), Expect = 7.4e-12, Sum P(3) = 7.4e-12
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 267 RIRELAFLNPKLTIALRKEDSDPEKN 292
++R+ ++ L+ A +K D D KN
Sbjct: 496 KVRQSEAIDNLLSFADKKRDKDLAKN 521
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 168 (64.2 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 43/114 (37%), Positives = 62/114 (54%)
Query: 487 KLADCSSTTPEES---EIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEA 540
KL D + ++ + + EG+SA G A GR + PLRGK+LNV
Sbjct: 529 KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFD 588
Query: 541 AMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTF 594
+ KNEEIQ++ +GL K E + LRY ++I+TD D DG+HI+ LL+ F
Sbjct: 589 QISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINF 642
Score = 95 (38.5 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 340 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 399
SD S + + NSI T GGTH+ + + L+ KK+K K L +R
Sbjct: 394 SDG-SFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNY 450
Query: 400 LTCIISVRVPNPEFEGQTKTRLGNPEV----RKVVDQS 433
++ ++ NP F QTK +L + + ++D+S
Sbjct: 451 CFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSKPILDES 488
Score = 79 (32.9 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EI+ NA D Q I V + N +SV +NG+GIP+++H
Sbjct: 167 GLYKIFDEIVVNAADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMH 217
Score = 44 (20.5 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN 138
S + Q L E + RP YIGS VY + ++ + Y + + +
Sbjct: 117 SSKYQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGL-YKIFDEI 175
Query: 139 SVSVADN 145
V+ ADN
Sbjct: 176 VVNAADN 182
Score = 37 (18.1 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 201 ESLEVTVWRDG----MEYHQKY 218
E+ E++VW +G +E H+++
Sbjct: 199 ETNEISVWNNGKGIPVEMHEEH 220
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 168 (64.2 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 43/114 (37%), Positives = 62/114 (54%)
Query: 487 KLADCSSTTPEES---EIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEA 540
KL D + ++ + + EG+SA G A GR + PLRGK+LNV
Sbjct: 529 KLTDANRAGTKDGYKCTLILTEGESAKGLAMAGRAVVGADLFGVYPLRGKMLNVRDASFD 588
Query: 541 AMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTF 594
+ KNEEIQ++ +GL K E + LRY ++I+TD D DG+HI+ LL+ F
Sbjct: 589 QISKNEEIQSIKNFMGLQHKKEYTDTKGLRYGHLMIMTDQDHDGSHIKGLLINF 642
Score = 95 (38.5 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 340 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREG 399
SD S + + NSI T GGTH+ + + L+ KK+K K L +R
Sbjct: 394 SDG-SFKQVSFVNSIATTSGGTHVNYIADQIAGKLSESLKKNK--KGTGSILKPAQIRNY 450
Query: 400 LTCIISVRVPNPEFEGQTKTRLGNPEV----RKVVDQS 433
++ ++ NP F QTK +L + + ++D+S
Sbjct: 451 CFLFVNAKIVNPAFSSQTKEQLTTKQTQFGSKPILDES 488
Score = 79 (32.9 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLAD-NSVSVADNGRGIPIDLH 154
GL+ + EI+ NA D Q I V + N +SV +NG+GIP+++H
Sbjct: 167 GLYKIFDEIVVNAADNKQNDDNMDEIRVTYSRETNEISVWNNGKGIPVEMH 217
Score = 44 (20.5 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN 138
S + Q L E + RP YIGS VY + ++ + Y + + +
Sbjct: 117 SSKYQKLNLREHITIRPDSYIGSVERTTQEMWVYNSEIDGMEFREVSYVPGL-YKIFDEI 175
Query: 139 SVSVADN 145
V+ ADN
Sbjct: 176 VVNAADN 182
Score = 37 (18.1 bits), Expect = 3.4e-12, Sum P(4) = 3.4e-12
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 201 ESLEVTVWRDG----MEYHQKY 218
E+ E++VW +G +E H+++
Sbjct: 199 ETNEISVWNNGKGIPVEMHEEH 220
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 217 (81.4 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 72/282 (25%), Positives = 126/282 (44%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNS-LGKKSKTVKDKDISLSGEHVREGLTCIISV 406
+ + NSI T+ GGTH+ +++ + + KK+K D + H+ + C+I
Sbjct: 381 VSFVNSICTVKGGTHVTHALSNIVTAIQEQVNKKNKGSADIKPAFIKNHLSVFVNCLIE- 439
Query: 407 RVPNPEFEGQTKTRLGNPEVRKVVD--QSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXX 464
NP F+ QTK L + ++ + ++++ L+ +
Sbjct: 440 ---NPHFDSQTKETLTS-KISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSAL 495
Query: 465 XXXXXXXXVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD--- 518
+ K S+P KL D + T E+ + + EGDSA A G
Sbjct: 496 KRSTSSGGKKGKV-----SIP-KLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVG 549
Query: 519 RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEA-LRYHKIIIL 577
+ PL+GK+LNV R + N+EI N++ LGL G+ ++ + LRY ++I+
Sbjct: 550 KDHYGAFPLKGKLLNV-RDQSTKVINNDEINNIVTILGLKY-GKVYETLSDLRYGHLMIM 607
Query: 578 TDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKV 618
TD D DG+HI+ L++ + + TL G + + P+ KV
Sbjct: 608 TDQDHDGSHIKGLIINMVHHFWPTLLRMPGFLVEFITPIVKV 649
Score = 74 (31.1 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 106 GLHHLVYEILDNAVDEAQA-GYASNIEVALLADNS-VSVADNGRGIPIDLH 154
G++ + EIL NA D Q G I+V + + +SV ++G GIPI +H
Sbjct: 152 GIYKIFDEILVNAADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVH 202
Score = 52 (23.4 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 60 SSSIATEAFKENPVSKTYGS--EQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILD 116
SSS FK S G E+I Q E L+ + RP YIGST + V+E D
Sbjct: 82 SSSDNENVFKNIASSAKKGKSIEEIYQKKELLDQILLRPDTYIGSTERQEEELWVWE--D 139
Query: 117 NAVDEAQAGYASNIEVALLADNSVSVADN 145
+ + + I + + V+ ADN
Sbjct: 140 KRMVHRKVSFVPGI-YKIFDEILVNAADN 167
Score = 44 (20.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 204 EVTVWRDGMEYHQKYSRGKPVTTLTCHVL--PVDSKDRQG 241
E+ VW D H+K S + + +L D+K R+G
Sbjct: 133 ELWVWEDKRMVHRKVSFVPGIYKIFDEILVNAADNKQREG 172
Score = 39 (18.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 234 VDSKDRQGTRIRFWPDKQVFTTAIQF 259
+ S +RQ + W DK++ + F
Sbjct: 124 IGSTERQEEELWVWEDKRMVHRKVSF 149
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 189 (71.6 bits), Expect = 6.1e-16, Sum P(4) = 6.1e-16
Identities = 51/154 (33%), Positives = 79/154 (51%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ + + G KL D + + S + + EGDSA G GRDR + P
Sbjct: 427 SAVKHTKIKGVPKLDDANDAGGKNSNSCTLILTEGDSAKTLAVSGLGVVGRDR--YGVFP 484
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK---GEDFKKEALRYHKIIILTDADVD 583
LRGK+LNV + +N EI N+I+ LGL K + ++LRY K++I+TD D D
Sbjct: 485 LRGKMLNVREASHKQIMENAEINNIIKILGLQYKKNYSDPESLKSLRYGKLMIMTDQDQD 544
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
G+HI+ LL+ F + +L + + P+ K
Sbjct: 545 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIK 578
Score = 80 (33.2 bits), Expect = 6.1e-16, Sum P(4) = 6.1e-16
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 106 GLHHLVYEILDNAVDEAQAGYASN-IEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q N I+V + +N+ +SV +NG+GIP+ H
Sbjct: 79 GLYKIFDEILVNAADNKQRDKTMNCIKVNIDPENNTISVWNNGKGIPVVEH 129
Score = 67 (28.6 bits), Expect = 6.1e-16, Sum P(4) = 6.1e-16
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDK-DISLSGEHVREGLTCIISV 406
+ + NSI GG H + V + L + KK K+K +++ V+ + ++
Sbjct: 310 VSFVNSIDKNKGGRHTDYVADQIVSKLIEVVKK----KNKAGVAVKPFQVKNHMWLFVNC 365
Query: 407 RVPNPEFEGQTKTRL 421
+ NP F+ QTK +
Sbjct: 366 LIENPSFDSQTKENM 380
Score = 42 (19.8 bits), Expect = 6.1e-16, Sum P(4) = 6.1e-16
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 59 LSSSIATEAF-KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGP 104
L S +A K K E+I Q LE + RP YIGS P
Sbjct: 8 LKSLFENKALSKPKKDEKRLSVERIYQKKTQLEHILLRPDTYIGSVEP 55
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 197 (74.4 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 52/138 (37%), Positives = 71/138 (51%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 562 SLLRHRFLEEFITPIVKV 579
Score = 80 (33.2 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + A+N+ +S+ +NG+GIP+ H
Sbjct: 79 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEH 129
Score = 53 (23.7 bits), Expect = 1.8e-15, Sum P(3) = 1.8e-15
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSKT-VKDKDISLSGEHVR 397
+ + NSI T GG H++ V + ++ ++ + KK+K V K L G H++
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNKGGVAVKAHQLPG-HIQ 360
Score = 38 (18.4 bits), Expect = 3.3e-11, Sum P(3) = 3.3e-11
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYA 127
K K E+I Q LE + RP YIGS VY+ D ++ + +
Sbjct: 19 KNEDGKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDE-DVGINYREVTFV 77
Query: 128 SNIEVALLADNSVSVADNGRGIP 150
+ + + V+ ADN + P
Sbjct: 78 PGL-YKIFDEILVNAADNKQRDP 99
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 239 (89.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 75/278 (26%), Positives = 124/278 (44%)
Query: 348 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 407
+ + NSI TI GGTH++ V + +T + + K K+K+ ++ +V+ L ++
Sbjct: 314 VSFVNSIATIKGGTHVDYVTSQITNHIVAAVNK----KNKNANVKAHNVKNHLWVFVNAL 369
Query: 408 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXXXXXXXXXXX 467
+ NP F+ QTK L +R Q EL D
Sbjct: 370 IDNPAFDSQTKETL---TLR-------QSSFGSKCELSEDFLKKVGKSGVVENLLSWADF 419
Query: 468 XXXXXVRQKSVLRSSS-LPGKLADCSSTTPEESEI---FIVEGDSAGGSAKQGRD---RR 520
+++ ++ L KL D + + S + + EGDSA A GR
Sbjct: 420 KQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNN 479
Query: 521 FQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDA 580
+ + PLRGK+LNV + N+EI+NL + LGL + +LRY +++I+TD
Sbjct: 480 YCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQ 539
Query: 581 DVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG-VPPLYK 617
D DG+HI+ LL+ F + + +L V + P+ K
Sbjct: 540 DHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVK 577
Score = 157 (60.3 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 84/358 (23%), Positives = 149/358 (41%)
Query: 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA-GYASNIEVAL-LA 136
++ + V E E V+ RP Y+ P GL+ + EIL NA D Q +++V + +
Sbjct: 59 TQTLWVYEKDEMVQ-RPVTYV----P-GLYKIFDEILVNAADNKQRDAKMDSVQVVIDVE 112
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXX 196
N +SV ++G G+P+++H E + H
Sbjct: 113 QNLISVCNSGAGVPVEIHQEEGIYVPEMIFG--HLLTSSNYDDNVKKTTGGRNGYGAKLT 170
Query: 197 NALSESLEVTVWRDGM---EYHQKYSR--GK---PVTTLTCHVLPVDSKDRQGTRIRFWP 248
N S + DG +Y Q + GK PV T C+ K T++ F P
Sbjct: 171 NIFSTEFIIET-ADGKRLKKYKQVFENNMGKKSEPVIT-KCN------KSENWTKVTFKP 222
Query: 249 DKQVFT-TAIQFDHNTIAG-RIRELA-FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEE 305
D + F T ++ D + R+ ++A L + + L + P K+ + +Y ++
Sbjct: 223 DLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQI-PVKS-FTDY-----VDL 275
Query: 306 YVQWLNTDKK--PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 363
Y+ N + PL + D + + L S+ + + NSI TI GGTH+
Sbjct: 276 YLSAANKSRTEDPLPRLTEKVNDRWEVCVSL-----SEGQFQ-QVSFVNSIATIKGGTHV 329
Query: 364 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRL 421
+ V + +T + + K K+K+ ++ +V+ L ++ + NP F+ QTK L
Sbjct: 330 DYVTSQITNHIVAAVNK----KNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETL 383
Score = 42 (19.8 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS 139
E Q LE + RP YIGS VYE D V + Y + + +
Sbjct: 33 EMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYE-KDEMV-QRPVTYVPGL-YKIFDEIL 89
Query: 140 VSVADN 145
V+ ADN
Sbjct: 90 VNAADN 95
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 197 (74.4 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 52/138 (37%), Positives = 71/138 (51%)
Query: 490 DCSSTTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
D S E + + EGDSA G GRD+ + PLRGKILNV + +
Sbjct: 445 DAGSRNSAECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIME 502
Query: 545 NEEIQNLIRALGLGVK----GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQK 600
N EI N+I+ +GL K ED K LRY KI+I+TD D DG+HI+ LL+ F +
Sbjct: 503 NAEINNIIKIVGLQYKKNYEDEDSLK-TLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 561
Query: 601 TLFDEGCIYVGVPPLYKV 618
+L + + P+ KV
Sbjct: 562 SLLRHRFLEEFITPIVKV 579
Score = 80 (33.2 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q S I V + A+N+ +S+ +NG+GIP+ H
Sbjct: 79 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDAENNLISIWNNGKGIPVVEH 129
Score = 52 (23.4 bits), Expect = 2.2e-15, Sum P(3) = 2.2e-15
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 348 LGYANSIRTIDGGTHIEGVKASL-TRTLNSLGKKSK 382
+ + NSI T GG H++ V + ++ ++ + KK+K
Sbjct: 310 ISFVNSIATSKGGRHVDYVADQIVSKLVDVVKKKNK 345
Score = 38 (18.4 bits), Expect = 4.2e-11, Sum P(3) = 4.2e-11
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYA 127
K K E+I Q LE + RP YIGS VY+ D ++ + +
Sbjct: 19 KNEDGKKRLSVERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDE-DVGINYREVTFV 77
Query: 128 SNIEVALLADNSVSVADNGRGIP 150
+ + + V+ ADN + P
Sbjct: 78 PGL-YKIFDEILVNAADNKQRDP 99
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 192 (72.6 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 477 SVLRSSSLPG--KLADCSSTTPEES---EIFIVEGDSA-----GGSAKQGRDRRFQAILP 526
S ++ + + G KL D + + S + + EGDSA G GRD+ + P
Sbjct: 450 SAVKHTKIKGVPKLDDANDAGNKNSIDCTLILTEGDSAKTLAVSGLGVVGRDK--YGVFP 507
Query: 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG--EDFKK-EALRYHKIIILTDADVD 583
LRGK+LNV + +N EI N+I+ +GL K ED + ++LRY KI+I+TD D D
Sbjct: 508 LRGKMLNVREASHKQIMENAEINNIIKIVGLQYKKNYEDRESLKSLRYGKIMIMTDQDQD 567
Query: 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
G+HI+ LL+ F + +L + + P+ KV
Sbjct: 568 GSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKV 602
Score = 79 (32.9 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 106 GLHHLVYEILDNAVDEAQAGYA-SNIEVALLADNS-VSVADNGRGIPIDLH 154
GL+ + EIL NA D Q + S I+V + +N+ +SV +NG+GIP+ H
Sbjct: 77 GLYKIFDEILVNAADNKQRDKSMSCIKVTIDPENNTISVWNNGKGIPVVEH 127
Score = 61 (26.5 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 359 GGTHIEGVKASL-TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 417
GG H++ V + T+ ++ + KK+K + + V+ + ++ + NP F+ QT
Sbjct: 344 GGRHVDYVADQIVTKLIDVVKKKNKN----GVGVKPFQVKNHMWIFVNSLIENPTFDSQT 399
Query: 418 KTRL 421
K +
Sbjct: 400 KENM 403
Score = 39 (18.8 bits), Expect = 3.0e-15, Sum P(4) = 3.0e-15
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 69 KENPVSKTYGSEQI-QVLEGLEAVRKRPAMYIGS 101
K + K E+I Q LE + RP YIGS
Sbjct: 17 KADGAQKRLSVERIYQKKTQLEHILLRPDTYIGS 50
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 214 (80.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 80/293 (27%), Positives = 126/293 (43%)
Query: 340 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 398
SD S + + NSI T GGTH++ V + L +L KK K K + + + VR+
Sbjct: 344 SDG-SFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVRD 400
Query: 399 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXX 458
+ I+ + NP F QTK +L KV ++ + ++
Sbjct: 401 NMFLFINCLIENPAFTSQTKEQL----TTKVSQFGGKDKFVA----NDNLINRILKTSIV 452
Query: 459 XXXXXXXXXXXXXXVRQKSVLRSSSLPGK--LADCSSTTPEESE---IFIVEGDSAGGSA 513
+++ R S + G+ L D + ++ + + EG SA A
Sbjct: 453 DKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLA 512
Query: 514 KQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKK 566
G R + PLRGK+LNV + KN EI +L + +GL K E+ K
Sbjct: 513 VAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIK- 571
Query: 567 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKV 618
+LRY I+I+TD D DG+HI+ L++ F L D G + + P+ KV
Sbjct: 572 -SLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKV 623
Score = 157 (60.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 78/324 (24%), Positives = 129/324 (39%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLADNSV-SVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D + + NI V + A+N++ V ++G+GIPI++H N E
Sbjct: 109 GLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPE 168
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKP 223
+ L N S EV M K S
Sbjct: 169 LIFGNL--LTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNN 226
Query: 224 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 283
++ ++ + ++ T+I F PD F D N + +R + L ++
Sbjct: 227 MSNVSKPKITTLRPKKEYTKITFRPDLSKFDMDC-LD-NDLLSVLRRRVY---DLCGTVK 281
Query: 284 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL-QW-CSD 341
+ + N F G +E YV+ + G K+ I ++ +W +
Sbjct: 282 NCNIYLNDKRLNISSFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAF 341
Query: 342 AYSD---TMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVR 397
A SD + + NSI T GGTH++ V + L +L KK K K + + + VR
Sbjct: 342 AVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVR 399
Query: 398 EGLTCIISVRVPNPEFEGQTKTRL 421
+ + I+ + NP F QTK +L
Sbjct: 400 DNMFLFINCLIENPAFTSQTKEQL 423
Score = 60 (26.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 55 PRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGS 101
P ++S + + P T SE Q L LE + KRP YIGS
Sbjct: 36 PLGDATNSTVSSSRSSTP-KPTNASETYQKLSQLEHILKRPDTYIGS 81
Score = 37 (18.1 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 40 RGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYG 78
+G+ ++ T+ N+ +P + + + + ++ T G
Sbjct: 152 KGIPIEMHTKENMYIPELIFGNLLTSSNYDDDQKKVTGG 190
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 214 (80.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 80/293 (27%), Positives = 126/293 (43%)
Query: 340 SDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVRE 398
SD S + + NSI T GGTH++ V + L +L KK K K + + + VR+
Sbjct: 344 SDG-SFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVRD 400
Query: 399 GLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVXXXXXXXXXX 458
+ I+ + NP F QTK +L KV ++ + ++
Sbjct: 401 NMFLFINCLIENPAFTSQTKEQL----TTKVSQFGGKDKFVA----NDNLINRILKTSIV 452
Query: 459 XXXXXXXXXXXXXXVRQKSVLRSSSLPGK--LADCSSTTPEESE---IFIVEGDSAGGSA 513
+++ R S + G+ L D + ++ + + EG SA A
Sbjct: 453 DKIRAIANANEDKALQKADGSRKSRIKGQVNLVDANKAGTKDGHNCTLILTEGLSAMNLA 512
Query: 514 KQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK----GEDFKK 566
G R + PLRGK+LNV + KN EI +L + +GL K E+ K
Sbjct: 513 VAGLSVVGRDYYGCFPLRGKLLNVREASADQISKNAEINSLKQIIGLQHKKVYTAENIK- 571
Query: 567 EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKV 618
+LRY I+I+TD D DG+HI+ L++ F L D G + + P+ KV
Sbjct: 572 -SLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLEFITPIVKV 623
Score = 157 (60.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 78/324 (24%), Positives = 129/324 (39%)
Query: 106 GLHHLVYEILDNAVD-EAQAGYASNIEVALLADNSV-SVADNGRGIPIDLHPATNKSALE 163
GL+ + EIL NA D + + NI V + A+N++ V ++G+GIPI++H N E
Sbjct: 109 GLYKIFDEILVNAADNKIRDPSMKNIRVKIDAENNIIEVMNDGKGIPIEMHTKENMYIPE 168
Query: 164 TVLTVLHAXXXXXXXXXXXXXXXXXXXXXXXXXNALSESLEVTVWRDGMEYHQKYSRGKP 223
+ L N S EV M K S
Sbjct: 169 LIFGNL--LTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNMGKLYKQSWTNN 226
Query: 224 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 283
++ ++ + ++ T+I F PD F D N + +R + L ++
Sbjct: 227 MSNVSKPKITTLRPKKEYTKITFRPDLSKFDMDC-LD-NDLLSVLRRRVY---DLCGTVK 281
Query: 284 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLAL-QW-CSD 341
+ + N F G +E YV+ + G K+ I ++ +W +
Sbjct: 282 NCNIYLNDKRLNISSFKGYVEMYVKAIKERSPEPEPQDGTIKNFTTIVHEVFNDRWEVAF 341
Query: 342 AYSD---TMLGYANSIRTIDGGTHIEGVKASLTRTL-NSLGKKSKTVKDKDISLSGEHVR 397
A SD + + NSI T GGTH++ V + L +L KK K K + + + VR
Sbjct: 342 AVSDGSFNQVSFVNSIATTSGGTHVKYVSDQIINKLVETLSKKEKG--KKKLMIKPQEVR 399
Query: 398 EGLTCIISVRVPNPEFEGQTKTRL 421
+ + I+ + NP F QTK +L
Sbjct: 400 DNMFLFINCLIENPAFTSQTKEQL 423
Score = 60 (26.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 55 PRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGS 101
P ++S + + P T SE Q L LE + KRP YIGS
Sbjct: 36 PLGDATNSTVSSSRSSTP-KPTNASETYQKLSQLEHILKRPDTYIGS 81
Score = 37 (18.1 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 40 RGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYG 78
+G+ ++ T+ N+ +P + + + + ++ T G
Sbjct: 152 KGIPIEMHTKENMYIPELIFGNLLTSSNYDDDQKKVTGG 190
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 155 (59.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 50/153 (32%), Positives = 78/153 (50%)
Query: 480 RSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 529
++S L G KL D + + S+ + + EGDSA G + GRD+ + P R
Sbjct: 33 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFRR 90
Query: 530 KILNVERKDEAAMYKNEEIQNLIRALGLGV--KGE---DFKKEALRYHKIIILTDADVDG 584
K+LNV + + + E+ +I+ LGL K E DFK LRY K++I+ + D DG
Sbjct: 91 KLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFK--TLRYGKLLIMANHDSDG 148
Query: 585 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
+ + LLL FF+R+ LF + + P+ K
Sbjct: 149 SQFKGLLLNFFHRFWPALFKRDFVEDFITPIAK 181
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 155 (59.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 50/153 (32%), Positives = 78/153 (50%)
Query: 480 RSSSLPG--KLADCSSTTPEESE---IFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 529
++S L G KL D + + S+ + + EGDSA G + GRD+ + P R
Sbjct: 33 KTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDK--YGVFPFRR 90
Query: 530 KILNVERKDEAAMYKNEEIQNLIRALGLGV--KGE---DFKKEALRYHKIIILTDADVDG 584
K+LNV + + + E+ +I+ LGL K E DFK LRY K++I+ + D DG
Sbjct: 91 KLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFK--TLRYGKLLIMANHDSDG 148
Query: 585 AHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYK 617
+ + LLL FF+R+ LF + + P+ K
Sbjct: 149 SQFKGLLLNFFHRFWPALFKRDFVEDFITPIAK 181
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 622 562 0.0010 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 97
No. of states in DFA: 614 (65 KB)
Total size of DFA: 294 KB (2153 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.59u 0.09s 42.68t Elapsed: 00:00:02
Total cpu time: 42.63u 0.10s 42.73t Elapsed: 00:00:02
Start: Sat May 11 10:18:37 2013 End: Sat May 11 10:18:39 2013