BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007003
(622 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana
benthamiana GN=GYRB PE=2 SV=1
Length = 731
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/630 (81%), Positives = 558/630 (88%), Gaps = 16/630 (2%)
Query: 4 LLLKAPYLHIRVLMASRCFC---------SFSS------SLFFKPRTNFAIRGVSSQVLT 48
LL P H MASR SFSS S+ PR +R +S +L
Sbjct: 3 LLKPFPLQHSLRCMASRFLLHSHYHTHTLSFSSISLSRPSIVLNPRVINKLRRLSDAILI 62
Query: 49 RSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLH 108
R N+V RAF+SSS TEAF+EN SK YGSEQIQVLEGL+ VRKRP MYIGSTGPRGLH
Sbjct: 63 R-NMVSLRAFMSSSTTTEAFQENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGSTGPRGLH 121
Query: 109 HLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTV 168
HLVYEILDNAVDEAQAG+A+ I+V L ADNSVS+ADNGRGIP +LHP T KS+LETVLTV
Sbjct: 122 HLVYEILDNAVDEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHPVTKKSSLETVLTV 181
Query: 169 LHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLT 228
LHAGGKFGGSSSGY+VSGGLHGVGLSVVNALS++LEVT+WRDG EY QKYSRGKP+TTL
Sbjct: 182 LHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLI 241
Query: 229 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSD 288
CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELAFLNP+LTIAL+KED D
Sbjct: 242 CHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDID 301
Query: 289 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTML 348
PEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITID+ALQWCSDAYSDTML
Sbjct: 302 PEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCSDAYSDTML 361
Query: 349 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 408
GYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLSGEHVREGLTC+ISV+V
Sbjct: 362 GYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKV 421
Query: 409 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKR 468
PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL+ALKAALAAKR
Sbjct: 422 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKR 481
Query: 469 ARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLR 528
AR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGSAKQGRDRRFQAILPLR
Sbjct: 482 ARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLR 541
Query: 529 GKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 588
GKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR
Sbjct: 542 GKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 601
Query: 589 TLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
TLLLTFF+RYQ+ LF+EGCIYVGVPPLYKV
Sbjct: 602 TLLLTFFFRYQRALFEEGCIYVGVPPLYKV 631
>sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana
GN=GYRBM PE=2 SV=1
Length = 732
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/585 (82%), Positives = 529/585 (90%), Gaps = 5/585 (0%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R F + V SQ L + N + R FLS TEA +E SK Y SEQIQVLEGL+ VRK
Sbjct: 53 RLKFQLTSVLSQRLIQRNAISSR-FLS----TEASQETTTSKGYSSEQIQVLEGLDPVRK 107
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153
RP MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD SVSV DNGRGIP DL
Sbjct: 108 RPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDL 167
Query: 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGME 213
HPAT KS+LETVLTVLHAGGKFGG+SSGYSVSGGLHGVGLSVVNALSE+LEV+VWRDGME
Sbjct: 168 HPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGME 227
Query: 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 273
+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAF
Sbjct: 228 HKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAF 287
Query: 274 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 333
LNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D
Sbjct: 288 LNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVD 347
Query: 334 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393
+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSG
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407
Query: 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 453
EHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+SI+
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467
Query: 454 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 513
SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSA
Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527
Query: 514 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 573
KQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHK
Sbjct: 528 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 587
Query: 574 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
IIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KV
Sbjct: 588 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKV 632
>sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana
GN=GYRBC PE=2 SV=3
Length = 730
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/586 (82%), Positives = 533/586 (90%), Gaps = 2/586 (0%)
Query: 33 PRTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVR 92
PR F + V SQ L + N V P++F+SS++ E+ +E+ SK Y SE IQVLEGL+ VR
Sbjct: 47 PRIKFQLANVFSQRLVQRNAVSPKSFMSSTM--ESLQESSTSKDYSSEHIQVLEGLDPVR 104
Query: 93 KRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPID 152
KRP MYIGSTG RGLHHLVYEILDNA+DEAQAG+AS I+V L +D+SVS++DNGRGIP D
Sbjct: 105 KRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVVLHSDDSVSISDNGRGIPTD 164
Query: 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM 212
LHPAT KS+LETVLTVLHAGGKFGG SSGYSVSGGLHGVGLSVVNALSE+LEV V RDGM
Sbjct: 165 LHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGM 224
Query: 213 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 272
E+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIRELA
Sbjct: 225 EFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIRELA 284
Query: 273 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 332
FLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T+
Sbjct: 285 FLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTV 344
Query: 333 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392
D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KDISLS
Sbjct: 345 DVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLS 404
Query: 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 452
GEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDVL+SI
Sbjct: 405 GEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESI 464
Query: 453 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 512
+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDSAGGS
Sbjct: 465 ISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGS 524
Query: 513 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 572
AKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE LRYH
Sbjct: 525 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYH 584
Query: 573 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KV
Sbjct: 585 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKV 630
>sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=GYRB PE=2 SV=1
Length = 729
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/568 (78%), Positives = 506/568 (89%), Gaps = 1/568 (0%)
Query: 51 NVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHL 110
N V RAF++S+ A+EA +E V+ Y + +QVLE L+ VR RP MYIGSTG RGLHHL
Sbjct: 63 NGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHL 122
Query: 111 VYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLH 170
VYEILDNAVDEAQAGYA+ ++V L DNSVSV DNGRGIP D+HP T KS +ETVLT++H
Sbjct: 123 VYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMH 182
Query: 171 AGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCH 230
AGGKFGGS SGY+VSGGLHGVGLSVVNALSE+LEVTVWRDG EY Q YSRGK +T LT
Sbjct: 183 AGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSR 242
Query: 231 VLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE 290
L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAFLNP+LTIAL KE+ D +
Sbjct: 243 TLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQ 302
Query: 291 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGY 350
Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D++LQWCSD+YSDT+LGY
Sbjct: 303 V-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYSDTVLGY 361
Query: 351 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 410
ANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSGEHVREG+TCII+V+VPN
Sbjct: 362 ANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPN 421
Query: 411 PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRAR 470
PEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSILSKSL+ALKAALAAKRAR
Sbjct: 422 PEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRAR 481
Query: 471 DLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGK 530
+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSAKQGRDR+FQAILPLRGK
Sbjct: 482 ELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGK 541
Query: 531 ILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTL 590
ILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYHKI+ILTDADVDGAHIRTL
Sbjct: 542 ILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTL 601
Query: 591 LLTFFYRYQKTLFDEGCIYVGVPPLYKV 618
LLTFF+RYQK LFDEGCIYVGVPPLYKV
Sbjct: 602 LLTFFFRYQKALFDEGCIYVGVPPLYKV 629
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2
Length = 636
Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust.
Identities = 297/550 (54%), Positives = 398/550 (72%), Gaps = 22/550 (4%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y +E I+VL+GLE VR RP MYIGSTG RGLHHLVYE++DN+VDEA AGY I V L
Sbjct: 4 YSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHE 63
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D SV V DNGRGIP+D+HP +SALE V TVLHAGGKF S Y +SGGLHGVG+SVV
Sbjct: 64 DGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKF--SKDSYKISGGLHGVGVSVV 121
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV V RDG Y Q+Y RGKPVT + + D+ GT +RF PD +F+
Sbjct: 122 NALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET 177
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+FD + + R+RE+AFL P L I E D + + F GG+ EYV++LN KK
Sbjct: 178 -EFDPDILEHRLREIAFLVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKA 232
Query: 317 LHDVVGFRKDV--------DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
LHDV+ ++ D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K+
Sbjct: 233 LHDVIHIKRTEKVKTKNGEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKS 291
Query: 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 428
+LTR +N GKK +K KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++
Sbjct: 292 TLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKE 350
Query: 429 VVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKL 488
V ++++E L + + +P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKL
Sbjct: 351 AVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKL 410
Query: 489 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEI 548
ADCSST E++E+FIVEGDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I
Sbjct: 411 ADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQI 470
Query: 549 QNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 608
++I A+G G+ G+DF + LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +
Sbjct: 471 SDIIVAVGTGI-GDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRV 529
Query: 609 YVGVPPLYKV 618
Y+ +PPLY++
Sbjct: 530 YIALPPLYRI 539
>sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB
PE=3 SV=2
Length = 637
Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust.
Identities = 291/549 (53%), Positives = 391/549 (71%), Gaps = 17/549 (3%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
++ Y QIQVLEGLEAVRKRP MYIGSTG RGLHHLVYEI+DN++DEA AGY S+I+V
Sbjct: 5 NEIYDESQIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEIVDNSIDEALAGYCSHIKVF 64
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DNSV+V+D+GRG+PI +H K +E ++T+LHAGGKFGG + Y VSGGLHGVG
Sbjct: 65 IHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGA--YRVSGGLHGVGA 122
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALSE+ EV V +G + Q Y RGK + + D GT+I F PD ++F
Sbjct: 123 SVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFE----KIGDSDEHGTKIYFKPDPEIF 178
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNT 312
++D++T++ R+RELAFLN + I L E D NE F + GGL+ +V +LN
Sbjct: 179 EDT-EYDYDTLSQRLRELAFLNKGIKIELTDERHDK-----NEIFHYEGGLKSFVSYLNR 232
Query: 313 DKKPL-HDVVGFRKDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K+ + + + +D ++++ALQ+ +D Y++ + +AN+I TI+GGTH+ G K +L
Sbjct: 233 NKEVVFKEPIYVEGSIDSNYSVEIALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTAL 291
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TR +N KK +K+ D +LSGE +REGLT ++SV++ P+FEGQTKT+LGN EVR +V
Sbjct: 292 TRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIV 351
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
D + E ++ YLE +P + ++ K+L A +A AAK+AR++ R+KSVL S+SLPGKLAD
Sbjct: 352 DSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLAD 411
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550
CSS EE EI+IVEGDSAGGSAKQGR+RRFQAILPLRGKI+NVE++ + +EEI+
Sbjct: 412 CSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKA 471
Query: 551 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 610
+ A G G+ G+DF LRYHKIII+TDADVDGAHIRTL+LTFFYRY L EG +++
Sbjct: 472 MATAFGGGI-GKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFI 530
Query: 611 GVPPLYKVC 619
PPLYKV
Sbjct: 531 AQPPLYKVT 539
>sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3
SV=1
Length = 638
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/544 (52%), Positives = 383/544 (70%), Gaps = 11/544 (2%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY ++I + +
Sbjct: 7 SYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIE 66
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
DNS++V DNGRGIP+ +H + A+E ++TVLHAGGKF GS GY VSGGLHGVG SV
Sbjct: 67 KDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGS--GYKVSGGLHGVGASV 124
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS L+VTV RDG + Q Y RG PVT L + D GT F PD ++F+
Sbjct: 125 VNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSE 180
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
++D++ +A R+RELAFL + I + ED + + NEY + GG++ YV++LN K+
Sbjct: 181 TTEYDYDLLANRVRELAFLTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKE 238
Query: 316 PLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
+H+ + + DGIT+++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +
Sbjct: 239 VVHEEPIYIEGEKDGITVEVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVI 297
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N +K +K+ D +LSG+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D
Sbjct: 298 NDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLF 357
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
+ ++ +PD I+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS
Sbjct: 358 STAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSK 417
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 554
P SE++IVEGDSAGGSAKQGRDR FQAILPLRGKILNVE+ + N E++++I A
Sbjct: 418 DPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 477
Query: 555 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 614
LG G+ GEDF E RYHK++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PP
Sbjct: 478 LGTGI-GEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPP 536
Query: 615 LYKV 618
LYKV
Sbjct: 537 LYKV 540
>sp|Q9Z8R3|GYRB_CHLPN DNA gyrase subunit B OS=Chlamydia pneumoniae GN=gyrB PE=3 SV=1
Length = 805
Score = 554 bits (1427), Expect = e-157, Method: Compositional matrix adjust.
Identities = 289/559 (51%), Positives = 377/559 (67%), Gaps = 21/559 (3%)
Query: 71 NPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNI 130
+P K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AGY S I
Sbjct: 2 DPKEKNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRI 61
Query: 131 EVALLADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAGGKFGGSSSGYSV 184
+V +L D + + DNGRGIPI++H + SALE VLTVLHAGGKF S Y V
Sbjct: 62 DVRILEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDS--YKV 119
Query: 185 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244
SGGLHGVG+S VNALSE L TV++D Y ++SRG PVT L V DRQGT I
Sbjct: 120 SGGLHGVGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQY----VSVSDRQGTEI 175
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 304
F+PD ++F+T FD + + R+RELAFLN +TI ++D D ++ +F+ GG++
Sbjct: 176 VFYPDPKIFSTC-TFDRSILMKRLRELAFLNRGITIVF-EDDRDVSFDKVT-FFYEGGIQ 232
Query: 305 EYVQWLNTDKKPLHD----VVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDG 359
+V +LN +K+ L + G R DG I + ALQW S YS+ + YAN+I T G
Sbjct: 233 SFVSYLNQNKESLFSEPIYICGTRVGDDGEIEFEAALQWNS-GYSELVYSYANNIPTRQG 291
Query: 360 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 419
GTH+ G +LTR +N+ K K+ ++L+GE +REGLT +ISV+VPNP+FEGQTK
Sbjct: 292 GTHLTGFSTALTRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQ 351
Query: 420 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 479
+LGN +V V Q V E LT + E +P + I+ K A +A AAK+AR+L +KS L
Sbjct: 352 KLGNSDVSSVAQQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSAL 411
Query: 480 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 539
S+ LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQAILP+RGKILNVE+
Sbjct: 412 DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARL 471
Query: 540 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 599
+++N+EI +I ALG G+ ++F LRY +III+TDADVDG+HIRTLLLTFFYR+
Sbjct: 472 QKIFQNQEIGTIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHM 531
Query: 600 KTLFDEGCIYVGVPPLYKV 618
L + C+Y+ PPLYKV
Sbjct: 532 TALIENECVYIAQPPLYKV 550
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrB PE=3 SV=1
Length = 643
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/547 (54%), Positives = 380/547 (69%), Gaps = 11/547 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+G YHQ Y +G P L + D+ GT IRF DK++F
Sbjct: 129 SVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I L+ E E+ + + Y + GG++ YV LN +
Sbjct: 185 TETTVYNYETLQKRIRELAFLNKGIQITLKDERE--EEVREDSYHYEGGIKSYVDLLNEN 242
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+PLHD + + D I +++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 243 KEPLHDEPIYIHQSKDDIEVEIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 301
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G +SK +K+ LSGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 302 VLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDR 361
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V I+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCS
Sbjct: 362 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCS 421
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S PEESEIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 422 SKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 481
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ GE F RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 482 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 540
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 541 PPLYKLT 547
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrB PE=3 SV=1
Length = 643
Score = 550 bits (1416), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/547 (54%), Positives = 380/547 (69%), Gaps = 11/547 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+G YHQ Y +G P L + D+ GT IRF DK++F
Sbjct: 129 SVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I L+ E E+ + + Y + GG++ YV LN +
Sbjct: 185 TETTVYNYETLQKRIRELAFLNKGIQITLKDERE--EEVREDSYHYEGGIKSYVDLLNEN 242
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+PLHD + + D I +++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 243 KEPLHDEPIYIHQSKDDIEVEIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 301
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G +SK +K+ LSGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 302 VLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDR 361
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V I+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCS
Sbjct: 362 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCS 421
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S PEESEIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 422 SKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 481
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ GE F RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 482 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 540
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 541 PPLYKLT 547
>sp|O67137|GYRB_AQUAE DNA gyrase subunit B OS=Aquifex aeolicus (strain VF5) GN=gyrB PE=3
SV=1
Length = 792
Score = 548 bits (1412), Expect = e-155, Method: Compositional matrix adjust.
Identities = 280/552 (50%), Positives = 385/552 (69%), Gaps = 16/552 (2%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
+++ + Y +E I+ + GLE VR RPAMYIG G RGLHHL++EILDNAVDEA AGYA
Sbjct: 4 RQSQTPQEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGYAR 63
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGL 188
NI V + DNSV+V D+GRGIP+D+HP T K A+E V T+L AGGKF Y+ SGGL
Sbjct: 64 NISVTIHRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKF--EKKVYTYSGGL 121
Query: 189 HGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
HGVG SVVNALSE L V V+RDG Y + RG+ V L HV V ++GT++ F P
Sbjct: 122 HGVGASVVNALSEWLIVEVYRDGKIYRMAFKRGEVVEPL--HV--VGETKKRGTKVSFKP 177
Query: 249 DKQVF-TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 307
D ++F TT I+FD + R+RELA+LNP++ L +D ++ Y F G+EE V
Sbjct: 178 DPEIFETTEIKFD--IVEKRVRELAYLNPEVKFEL----TDERLGKHLIYKFDRGIEELV 231
Query: 308 QWLNTDKKPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
++LN K+PL D++ + + +G+ +D+A Q+ D Y + + + N+I+T++GGTH+ G
Sbjct: 232 KYLNEGKEPLFKDIIRIQGEKEGVIVDIAFQYVKD-YKERIESFVNNIKTVEGGTHVTGF 290
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
++ L++ + + + K K+ S +GE VREGLT +++ +VPNP+FEGQTKT+LGN V
Sbjct: 291 RSGLSKAVIRMAQGLKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNV 350
Query: 427 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 486
+++V+ ++LT Y E DVL +I+ K++ A A AAK+A++LVR+KS L LPG
Sbjct: 351 KQIVESITYDFLTSYFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPG 410
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 546
KLADCS T P + EIF+VEGDSAGGSAKQ RDRR+QAILPLRGKI+NVE+ + N+
Sbjct: 411 KLADCSETDPSKCEIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSND 470
Query: 547 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 606
EI+ ++ ALG G+ GED + LRYHKII++TDADVDG+HIRTLLLTFFYR+ L +EG
Sbjct: 471 EIKAIVSALGCGI-GEDLDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEG 529
Query: 607 CIYVGVPPLYKV 618
+Y+ PPLY+V
Sbjct: 530 YVYIAEPPLYRV 541
>sp|P0DG05|GYRB_STRPQ DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrB PE=3 SV=1
Length = 650
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 278/545 (51%), Positives = 388/545 (71%), Gaps = 11/545 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 554 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 614 PLYKV 618
P+Y V
Sbjct: 543 PIYGV 547
>sp|P0DG04|GYRB_STRP3 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrB PE=3 SV=1
Length = 650
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 278/545 (51%), Positives = 388/545 (71%), Gaps = 11/545 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 554 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 614 PLYKV 618
P+Y V
Sbjct: 543 PIYGV 547
>sp|O87667|GYRB_CAMJE DNA gyrase subunit B OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=gyrB PE=3 SV=2
Length = 769
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/544 (50%), Positives = 374/544 (68%), Gaps = 14/544 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEV 132
+ + YG+ I+VL+GLEAVRKRP MYIG T GLHH++YE++DN++DEA AG+ I+V
Sbjct: 1 MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVDNSIDEAMAGHCDTIDV 60
Query: 133 ALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVG 192
+ + S V+DNGRGIP+D+HP N L VLTVLHAGGKF + Y VSGGLHGVG
Sbjct: 61 EITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGKFDKDT--YKVSGGLHGVG 118
Query: 193 LSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 252
+SVVNALS+ L TV R+G Y Q++S GK ++ + + GT I FWPD Q+
Sbjct: 119 VSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGV----IGKSKKTGTTIEFWPDDQI 174
Query: 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312
F +FD+ +A R RELA+LNPK+TI + D ++ + F GG+ ++V LN
Sbjct: 175 FEVT-EFDYEILAKRFRELAYLNPKITINFK----DNRVGKHESFHFEGGISQFVTDLNK 229
Query: 313 DKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+ L + F D + + +++AL + +D YS+ +L + N+I+T DGGTH G + LTR
Sbjct: 230 -KEALTKAIFFSVDEEDVNVEVALLY-NDTYSENLLSFVNNIKTPDGGTHEAGFRMGLTR 287
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+++ + + + ++KD ++G+ VREGL I+SV+VP P+FEGQTK +LG+ VR +V +
Sbjct: 288 VISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKGKLGSTYVRPIVSK 347
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
+ EYLT+Y E +P +I++K+L A + AAK+AR+L R+K L +LPGKLADC
Sbjct: 348 ASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKESLSVGTLPGKLADCQ 407
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S P ESEI++VEGDSAGGSAKQGR+R FQAILPLRGKILNVE+ + K+E+IQN+I
Sbjct: 408 SKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVEKARLDKILKSEQIQNMI 467
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ GEDF LRYHKIII+TDADVDG+HI+TLLLTFF+R+ L G IY+
Sbjct: 468 TAFGCGI-GEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTFFFRFMNELVANGHIYLAQ 526
Query: 613 PPLY 616
PPLY
Sbjct: 527 PPLY 530
>sp|Q9PKK3|GYRB_CHLMU DNA gyrase subunit B OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=gyrB PE=3 SV=1
Length = 804
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 281/555 (50%), Positives = 375/555 (67%), Gaps = 21/555 (3%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AG+ + + V +
Sbjct: 6 KKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRI 65
Query: 135 LADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAGGKFGGSSSGYSVSGGL 188
L D +SV+DNGRGIP+ +H + SALE VLTVLHAGGKF S Y VSGGL
Sbjct: 66 LEDGGISVSDNGRGIPVQIHEKESAKQGREISALEVVLTVLHAGGKFDKDS--YKVSGGL 123
Query: 189 HGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
HGVG+S VNALSE V++DG Y ++S+G P+T L + S D++GT I F+P
Sbjct: 124 HGVGVSCVNALSEKFIANVFKDGQAYSMEFSKGAPLTALQV----LGSTDKRGTEILFYP 179
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
D VF+T + FD + R+RELAFLN +TI ++D D ++ +F+ GG++ +V
Sbjct: 180 DPTVFSTCV-FDRAILMKRLRELAFLNRGITIIF-EDDRDAGFDKVT-FFYEGGIQSFVS 236
Query: 309 WLNTDKKPLHD----VVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 363
+LN +K+ L + G ++ DG I + ALQW S YS+ + YAN+I T GGTH+
Sbjct: 237 YLNQNKESLFPTPIYIQGSKRGDDGDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTHL 295
Query: 364 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN 423
G +LTR +NS K K +SL+GE +REGL I+SV+VPNP+FEGQTK +LGN
Sbjct: 296 TGFSTALTRAVNSYIKSHNLAKSDKLSLTGEDIREGLVAIVSVKVPNPQFEGQTKQKLGN 355
Query: 424 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSS 483
+V V Q E LT + E +P + +I+ K A +A AAKRAR+L +KS L S+
Sbjct: 356 SDVGSVAQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTIRKSALDSAR 415
Query: 484 LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMY 543
LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQAILP+RGKILNVE+ ++
Sbjct: 416 LPGKLVDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIF 475
Query: 544 KNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLF 603
+N+EI ++I ALG G+ ++F LRY ++II+TDADVDG+HIRTLLLTFFYR+ L
Sbjct: 476 QNQEIGSIIAALGCGIGTDNFNLSKLRYKRVIIMTDADVDGSHIRTLLLTFFYRHMSALI 535
Query: 604 DEGCIYVGVPPLYKV 618
+ GC+Y+ PPLY+V
Sbjct: 536 ENGCVYIAQPPLYRV 550
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3
SV=1
Length = 637
Score = 543 bits (1399), Expect = e-153, Method: Compositional matrix adjust.
Identities = 285/546 (52%), Positives = 373/546 (68%), Gaps = 12/546 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ Y QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AG+ I V
Sbjct: 5 QQAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVV 64
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DNS++V DNGRGIP+ +H + A+E ++TVLHAGGKFGG S LHGVG
Sbjct: 65 IEEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGA 122
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS LEV V R+G ++QK+ RG P L + + DR GT+I F PD +F
Sbjct: 123 SVVNALSTMLEVEVHREGKVHYQKFHRGVPAADLEV----IGTTDRTGTKIHFKPDGDIF 178
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T F+++T+A R+RELAFLN L I + E+ + +E+ + GG+ +V+ LN
Sbjct: 179 TETTVFEYDTLASRLRELAFLNKGLRIKITDM---REEEKSDEFHYEGGIASFVEHLNRT 235
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
++ LH+ + + G+ +++A+Q+ +D ++ + +AN+I T +GGTH G K LTR
Sbjct: 236 RETLHETPIHIEGEKQGVYVEIAVQY-NDGFTSNIYSFANNINTHEGGTHESGFKTGLTR 294
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+N +K K+ D +L+GE VREGLT IISV++P+P+FEGQTKT+LGN E R + D
Sbjct: 295 VINDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDS 354
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ + +L HP V ++ K L A +A AAK+AR+L R+KS L SSLPGKLADCS
Sbjct: 355 LFTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCS 414
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S SEI+IVEGDSAGGSAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I
Sbjct: 415 SRDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAII 474
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
ALG G+ G+DF E RYHKIII+TDADVDGAHIRTL+LTFFYRY + L + G +Y+
Sbjct: 475 TALGTGI-GDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQ 533
Query: 613 PPLYKV 618
PPLYKV
Sbjct: 534 PPLYKV 539
>sp|D4GZ01|GYRB_HALVD DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM
3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 /
DS2) GN=gyrB PE=1 SV=1
Length = 639
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/546 (53%), Positives = 383/546 (70%), Gaps = 11/546 (2%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ QIQVLEGLEAVRKRPAMYIGST RGLHHLVYE++DN++DEA AG+ IEVAL
Sbjct: 7 YGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHE 66
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D SVSV DNGRGIP+D H ++ ALE ++TVLHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 67 DGSVSVTDNGRGIPVDTHEQYDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVSVV 124
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LEV V RDG + ++ G+P V ++ + GT IRFWPD +F T
Sbjct: 125 NALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT 184
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+FD T+ R+RELAFLN + I+L SD ++ + + F GG+ E+V++LN K
Sbjct: 185 -EFDFKTLENRLRELAFLNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTA 239
Query: 317 LHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LHD V+ + + +GI +++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N
Sbjct: 240 LHDDVIYYDDESEGIEVEIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVN 298
Query: 376 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
+ D D +L GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR +V+
Sbjct: 299 DYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESVT 358
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
+ L + E +PD +I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S
Sbjct: 359 HQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSR 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 554
P ESE+FIVEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A
Sbjct: 419 DPAESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITA 478
Query: 555 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 614
+G GV G++F E RY ++I++TDADVDGAHIRTLLLT YR+ + L + G +Y PP
Sbjct: 479 IGGGV-GDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPP 537
Query: 615 LYKVCF 620
LY+V +
Sbjct: 538 LYRVRY 543
>sp|P21558|GYRB_HALL2 DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 /
JCM 9276 / NCIMB 13854 / Aa 2.2) GN=gyrB PE=3 SV=1
Length = 639
Score = 536 bits (1380), Expect = e-151, Method: Compositional matrix adjust.
Identities = 288/546 (52%), Positives = 381/546 (69%), Gaps = 11/546 (2%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ QIQVLEGLEAVRKRPAMYIGST RGLHHLVYE++DN++DEA AG+ IEVAL
Sbjct: 7 YGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHE 66
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D SVSV DNGRGIP+ H ++ ALE ++TVLHAGGKF S Y VSGGLHGVG++VV
Sbjct: 67 DGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVTVV 124
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALS LEV V DG + ++ G+P V ++ + GT IRFWPD +F T
Sbjct: 125 NALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT 184
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+FD T+ R+RELAFLN + I+L SD ++ + + F GG+ E+V++LN K
Sbjct: 185 -EFDFKTLENRLRELAFLNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTA 239
Query: 317 LHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
LHD V+ + + +GI +++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N
Sbjct: 240 LHDDVIYYDDESEGIEVEIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVN 298
Query: 376 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
+ D D +L GE VREGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+
Sbjct: 299 DYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVT 358
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
+ L + E +PD +I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S
Sbjct: 359 HQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSR 418
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 554
P ESE+FIVEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A
Sbjct: 419 DPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITA 478
Query: 555 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 614
+G GV G++F E RY ++I++TDADVDGAHIRTLLLT YR+ + L + G +Y PP
Sbjct: 479 IGGGV-GDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPP 537
Query: 615 LYKVCF 620
LY+V +
Sbjct: 538 LYRVRY 543
>sp|O84193|GYRB_CHLTR DNA gyrase subunit B OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=gyrB PE=3 SV=1
Length = 804
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/556 (50%), Positives = 375/556 (67%), Gaps = 23/556 (4%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
K Y + I VLEGL+AVR+RP MYIG TG GLHHLVYE++DN++DEA AG+ + + V +
Sbjct: 6 KKYDASAITVLEGLQAVRERPGMYIGDTGVTGLHHLVYEVVDNSIDEAMAGFCTEVVVRI 65
Query: 135 LADNSVSVADNGRGIPIDLHPATNK------SALETVLTVLHAGGKFGGSSSGYSVSGGL 188
L D +S++DNGRGIPI +H + SALE VLTVLHAGGKF S Y VSGGL
Sbjct: 66 LEDGGISISDNGRGIPIQIHEKESAKQGREISALEVVLTVLHAGGKFDKDS--YKVSGGL 123
Query: 189 HGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248
HGVG+S VNALSE V++DG Y ++SRG P+TTL + D++GT + F+P
Sbjct: 124 HGVGVSCVNALSEKFIAKVFKDGQAYSMEFSRGAPLTTLQV----LGPTDKRGTEVLFYP 179
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 308
D +F+T + FD + R+RELAFLN +TI ++D D ++ +F+ GG++ +V
Sbjct: 180 DPAIFSTCV-FDRAILMKRLRELAFLNRGVTIVF-EDDRDTGFDKVV-FFYEGGIQSFVS 236
Query: 309 WLNTDKK-----PLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362
+LN +K+ P++ + G R DG I + ALQW S YS+ + YAN+I T GGTH
Sbjct: 237 YLNQNKEILFPNPIY-MQGSRPGDDGDIEFEAALQWNS-GYSELIYSYANNIPTRQGGTH 294
Query: 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG 422
+ G +LTR +NS K K +SL+GE ++EGL I+SV+VPNP+FEGQTK +LG
Sbjct: 295 LTGFSTALTRAVNSYIKAHNLSKSDKLSLTGEDIKEGLVAIVSVKVPNPQFEGQTKQKLG 354
Query: 423 NPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSS 482
N +V V Q E LT + E +P + +I+ K A +A AAKRAR+L +KS L S+
Sbjct: 355 NSDVGSVSQQISGEVLTTFFEENPQIAKTIVDKVFVAAQAREAAKRARELTLRKSALDSA 414
Query: 483 SLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAM 542
LPGKL DC PE+ E++IVEGDSAGGSAKQGRDRRFQAILP+RGKILNVE+ +
Sbjct: 415 RLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKV 474
Query: 543 YKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTL 602
++N+EI ++I ALG G+ ++F LRY +III+TDADVDG+HIRTLLLTFFYR+ L
Sbjct: 475 FQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSAL 534
Query: 603 FDEGCIYVGVPPLYKV 618
+ C+Y+ PPLY+V
Sbjct: 535 IENECVYIAQPPLYRV 550
>sp|P0A0K7|GYRB_STAAW DNA gyrase subunit B OS=Staphylococcus aureus (strain MW2) GN=gyrB
PE=3 SV=2
Length = 644
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/547 (53%), Positives = 380/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|P0A0K8|GYRB_STAAU DNA gyrase subunit B OS=Staphylococcus aureus GN=gyrB PE=1 SV=2
Length = 644
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/547 (53%), Positives = 380/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|Q6GD85|GYRB_STAAS DNA gyrase subunit B OS=Staphylococcus aureus (strain MSSA476)
GN=gyrB PE=3 SV=3
Length = 644
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/547 (53%), Positives = 380/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|Q2FKQ1|GYRB_STAA3 DNA gyrase subunit B OS=Staphylococcus aureus (strain USA300)
GN=gyrB PE=3 SV=3
Length = 644
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/547 (53%), Positives = 380/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB
PE=1 SV=2
Length = 644
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/547 (53%), Positives = 380/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|P66936|GYRB_STAAM DNA gyrase subunit B OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrB PE=1 SV=2
Length = 644
Score = 534 bits (1376), Expect = e-151, Method: Compositional matrix adjust.
Identities = 292/547 (53%), Positives = 380/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B OS=Staphylococcus aureus (strain MRSA252)
GN=gyrB PE=3 SV=3
Length = 644
Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust.
Identities = 292/547 (53%), Positives = 379/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K+ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|Q5HJZ1|GYRB_STAAC DNA gyrase subunit B OS=Staphylococcus aureus (strain COL) GN=gyrB
PE=3 SV=3
Length = 644
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/547 (53%), Positives = 379/547 (69%), Gaps = 10/547 (1%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEA RKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAARKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 193
+ DN + V DNGRGIP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 194 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 253
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 613 PPLYKVC 619
PPLYK+
Sbjct: 542 PPLYKLT 548
>sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2
Length = 640
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 284/546 (52%), Positives = 376/546 (68%), Gaps = 16/546 (2%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY I V++
Sbjct: 10 SYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIE 69
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
DNS+ V DNGRGIP+ + + A+E ++TVLHAGGKFGG S LHGVG SV
Sbjct: 70 EDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGASV 127
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS LEV V R+G ++QKY RG PV L + D+ GT RF PD ++F
Sbjct: 128 VNALSTELEVFVHREGKIHYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQE 183
Query: 256 AIQFDHNTIAGRIRELAFLNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
++ +T+A R+RELAFLN KLTI ++E Q E+ + GG++ YV+ LN
Sbjct: 184 TTVYEFDTLATRMRELAFLNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRS 238
Query: 314 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 372
K+P+H+ V DGI ++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR
Sbjct: 239 KQPIHEEPVYVEGSKDGIQVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTR 297
Query: 373 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 432
+N G+K+ +KD D +L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + +
Sbjct: 298 VINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 357
Query: 433 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 492
E ++L +P+V I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCS
Sbjct: 358 VFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 417
Query: 493 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552
S P SEI+IVEGDSAGGSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I
Sbjct: 418 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 477
Query: 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 612
A+G + G DF E RYHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+
Sbjct: 478 TAIGTNIGG-DFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 536
Query: 613 PPLYKV 618
PPL+KV
Sbjct: 537 PPLFKV 542
>sp|O29720|GYRB_ARCFU DNA gyrase subunit B OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=gyrB PE=3
SV=2
Length = 632
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 275/542 (50%), Positives = 375/542 (69%), Gaps = 14/542 (2%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I+VL+ LEAVRKRP MYIG G RGLHHL++E++DNAVDEA AGY I+V+L
Sbjct: 10 YTAKDIEVLDDLEAVRKRPGMYIGGVGVRGLHHLLWEVVDNAVDEALAGYCDTIKVSLHK 69
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
D S SV DNGRGIP ++H KSALE V+T LHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 70 DGSASVEDNGRGIPTEMHE-LGKSALEIVMTKLHAGGKF--SKKVYRVSGGLHGVGVSVV 126
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 256
NALSE LEV V R+G Y+QKY RG + GT +RF PD+++F T
Sbjct: 127 NALSEWLEVWVKRNGKIYYQKYQRGSRSPEAGHRTEVLGETKEHGTTVRFKPDREIFETT 186
Query: 257 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316
+F + +A R++ELA+LN L I L E E+ + F G+ V+ LN ++KP
Sbjct: 187 -EFKYEIVAQRLKELAYLNRGLKIILFDEREGKEET----FHFEDGIIGLVRSLNRNRKP 241
Query: 317 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 376
LH+ + DG+++++A+Q+ +D+ + + +AN+I T +GG+H+ G +A LTR +N
Sbjct: 242 LHEPIYIETTKDGVSVEVAIQF-TDSDVENIQAFANNINTSEGGSHVVGFRAGLTRAVNE 300
Query: 377 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 436
GKK K ++G +REGLT +ISV+VP P+FEGQTKT+L N +V+ VV+ +V
Sbjct: 301 YGKKHLK---KFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYS 357
Query: 437 YLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTP 496
+ +LE +P +++L+K + KA AAKRA++LV++K+ L ++LPGKLADCSS P
Sbjct: 358 GVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNEL-ITTLPGKLADCSSKNP 416
Query: 497 EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG 556
EE E+FIVEG+SAGGSAKQ RDRRFQAILP++GKI+NVE+ A + KN+EI+ +I A+G
Sbjct: 417 EERELFIVEGESAGGSAKQARDRRFQAILPIKGKIINVEKAGMARVLKNDEIKAIISAIG 476
Query: 557 LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY 616
G+ G+DF RY +III+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY
Sbjct: 477 AGI-GKDFDITKARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLY 535
Query: 617 KV 618
++
Sbjct: 536 QI 537
>sp|Q9A0L0|GYRB_STRP1 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M1 GN=gyrB
PE=3 SV=1
Length = 650
Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/545 (50%), Positives = 383/545 (70%), Gaps = 11/545 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S LHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FLYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 554 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 614 PLYKV 618
P+Y V
Sbjct: 543 PIYGV 547
>sp|O08399|GYRB_TREPA DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) GN=gyrB
PE=1 SV=1
Length = 637
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 286/555 (51%), Positives = 375/555 (67%), Gaps = 28/555 (5%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + I VLEGLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AGY I V L
Sbjct: 5 YSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQ 64
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
N V V DNGRGIP+D+HP SALE VLT LHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 65 GNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKS--YKVSGGLHGVGVSVV 122
Query: 197 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVF 253
NALS +EVTV+RDG EY+QK++ G P+ PV+ + +++GT IR+ D +F
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIF 175
Query: 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313
+ +D + + R+RELAFLN + I LR E K E+ F GG+ +V +LN
Sbjct: 176 KETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRG 233
Query: 314 K-----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
K +PL+ + G + DV +++ALQ+ D Y++ + + N I T +GGTH+EG K+
Sbjct: 234 KSVVPERPLY-IEGSKSDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKS 288
Query: 369 SLTRTLNSLGKKSKTVKDK---DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 425
+LTR N KKS + K + L GE VR GLT ++SV++P P+FEGQTKT+LGN E
Sbjct: 289 ALTRVANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSE 348
Query: 426 VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLP 485
VR +VD V E LT Y E +P VL IL KS++ +A LAA+RA++ R+KS + S LP
Sbjct: 349 VRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLP 408
Query: 486 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 545
GKLADCS P + E++IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + N
Sbjct: 409 GKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHN 468
Query: 546 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 605
E++Q +I LG GV G+DF +RYHK+II+ DADVDG+HIRTLLLTFF+RY + +
Sbjct: 469 EKLQPIIATLGTGV-GKDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEA 527
Query: 606 GCIYVGVPPLYKVCF 620
G +Y+ +PPLY++ +
Sbjct: 528 GYVYLAMPPLYRIAW 542
>sp|Q8P1M4|GYRB_STRP8 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrB PE=3 SV=1
Length = 650
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/545 (50%), Positives = 383/545 (70%), Gaps = 11/545 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S LHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 554 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 614 PLYKV 618
P+Y V
Sbjct: 543 PIYGV 547
>sp|Q5XD05|GYRB_STRP6 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrB PE=3 SV=1
Length = 650
Score = 514 bits (1325), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/545 (50%), Positives = 383/545 (70%), Gaps = 11/545 (2%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
ADNS++V D+GRGIP+D+ T + A+ETV TVLHAGGKFGG S LHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSS 130
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFT 186
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 315 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 433
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 493
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 494 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 554 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 614 PLYKV 618
P+Y V
Sbjct: 543 PIYGV 547
>sp|Q9L7L3|GYRB_MYCPA DNA gyrase subunit B OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=gyrB PE=3 SV=1
Length = 677
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 279/583 (47%), Positives = 382/583 (65%), Gaps = 38/583 (6%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++ YG+ I VLEGLEAVRKRP MYIGSTG RGLHHL++E++DN+VDEA AGY
Sbjct: 2 AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 186
A ++V +L D SV VADNGRGIP+ +H AT ++ V+T LHAGGKFGG +SGY+VSG
Sbjct: 62 ADRVDVRILDDGSVEVADNGRGIPVAMH-ATGAPTVDVVMTQLHAGGKFGGENSGYNVSG 120
Query: 187 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
GLHGVG+SVVNALS LEV + RDG E+ Q Y P T ++ R GT IRF
Sbjct: 121 GLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTLKQG-----EATKRTGTTIRF 175
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE--------------------- 285
W D +F T ++D T+A R++E+AFLN LTI L E
Sbjct: 176 WADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKS 234
Query: 286 -------DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ 337
+ P K ++ + + GGL ++V+ +N K P+H ++ F G +++A+Q
Sbjct: 235 AQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVEIAMQ 294
Query: 338 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 397
W + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +R
Sbjct: 295 W-NGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353
Query: 398 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 457
EGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P I++K++
Sbjct: 354 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAV 413
Query: 458 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 517
S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GR
Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473
Query: 518 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIIL 577
D FQAILPLRGKI+NVE+ + KN E+Q +I ALG G+ E F LRYHKI+++
Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDITKLRYHKIVLM 532
Query: 578 TDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620
DADVDG HI TLLLT +R+ + L + G +++ PPLYK+ +
Sbjct: 533 ADADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPLYKLKW 575
>sp|O87545|GYRB_TREDE DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=gyrB PE=3 SV=1
Length = 638
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/548 (50%), Positives = 375/548 (68%), Gaps = 16/548 (2%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + I VL+GLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AG+ I V L
Sbjct: 5 NYSANNITVLKGLEAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDKILVVLE 64
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
++ V V DNGRGIP+D+HP SALE VLT LHAGGKF S Y VSGGLHGVG+SV
Sbjct: 65 PNDIVRVEDNGRGIPVDIHPTEKISALELVLTRLHAGGKFDKGS--YKVSGGLHGVGVSV 122
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS +E V++DG E++ K+ +G ++ V + ++ GT IR+ D +FT
Sbjct: 123 VNALSVWMEAKVYKDGFEHYAKFEKG----SILEPVKKIGETEKSGTVIRWAVDPSIFTE 178
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKED-SDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
++ +A R+RELAFLN K++I +R E S P++ + F GG+ ++V +LN K
Sbjct: 179 TTVYNFEVLATRLRELAFLNSKISITMRDERLSTPKEVTFA---FEGGISQFVSYLNESK 235
Query: 315 KPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
+ V + + I ++A+Q+ +D Y++ +L + N I T +GGTH+EG K +LTR
Sbjct: 236 QVFPKSPVFIEGEKNDILCEVAIQY-NDGYNENLLSFVNDINTREGGTHLEGFKTALTRV 294
Query: 374 LNSLGKK-SKTVK--DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
+N KK K VK DK+ L+GE VR GLT I+SV+VP P+FEGQTKT+LGN +VR +V
Sbjct: 295 MNDFLKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIV 354
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
D V E LT + E +P+ ++ +L K ++ A +AA+RA++ R+KS L S LPGKLAD
Sbjct: 355 DSFVNEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLAD 414
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550
CS PE E++IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + NE++Q
Sbjct: 415 CSLKDPESCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEKLQP 474
Query: 551 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 610
+I LG G+ G+DF E LRYHK+II+ DADVDG+HIRTLLLTFF+RY + ++G +Y+
Sbjct: 475 IIATLGTGI-GKDFNIEKLRYHKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHVYL 533
Query: 611 GVPPLYKV 618
+PPLYK+
Sbjct: 534 AMPPLYKI 541
>sp|P57126|GYRB_BUCAI DNA gyrase subunit B OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=gyrB PE=3 SV=1
Length = 803
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/544 (48%), Positives = 369/544 (67%), Gaps = 13/544 (2%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y S I++L GL+AVRKRP MYIG T GLHH+V+EI+DN++DEA +GY I V +
Sbjct: 5 YDSSNIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALSGYCKEIIVTIH 64
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
+DNSVSV D+GRGIP D+HP N SA E +LTVLH+GGKF +S Y +SGGLHGVG+SV
Sbjct: 65 SDNSVSVKDDGRGIPTDIHPEENISAAEVILTVLHSGGKFDNAS--YQISGGLHGVGISV 122
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALSE LE+ + ++ +Y Q Y GKP L+ + + D GT IRFWP + FT
Sbjct: 123 VNALSEKLELIIDKNKKKYQQIYRHGKPENPLSI----IGTTDTTGTYIRFWPSYKTFTN 178
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
I+F + ++ R+REL+FLN + I L D + N Y + GG++ ++++LN K
Sbjct: 179 NIKFQYEILSKRLRELSFLNSNIAIYLE----DNRTSIKNCYHYKGGIKAFIKFLNAKKT 234
Query: 316 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 374
P+H + FR D I +++A+QW ++++ + +L + N+I DGGTH+ G ++ +TRTL
Sbjct: 235 PIHTHIFYFRSTKDQIELEIAMQW-NNSHQENILCFTNNIPQKDGGTHLAGFRSGMTRTL 293
Query: 375 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 434
N ++ K ++ GE VREGLT IIS+++P+P+F QTK +L + E R V++ +
Sbjct: 294 NLHIEREGYNKKNKTTIIGEDVREGLTAIISIKIPDPKFSSQTKDKLVSSEARSVIESLI 353
Query: 435 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 494
E L EYL +P I+ K ++A K AA+RAR++ ++KS+L +LPGKL+DC
Sbjct: 354 NENLIEYLLENPSDSKFIIQKIINAAKVREAARRAREINKKKSILDLGALPGKLSDCQEN 413
Query: 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 554
P+ SEI++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+ +LI A
Sbjct: 414 DPKFSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKSKFDKMILSQEVASLITA 473
Query: 555 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 614
LG G+ ++ + LRYH III+TDADVDGAHIRTLLLTFFYR L ++G +Y+ PP
Sbjct: 474 LGCGIGKNEYNIDKLRYHYIIIMTDADVDGAHIRTLLLTFFYRQLPELIEKGYVYIAQPP 533
Query: 615 LYKV 618
LYK+
Sbjct: 534 LYKL 537
>sp|P34031|GYRB_SPICI DNA gyrase subunit B OS=Spiroplasma citri GN=gyrB PE=3 SV=1
Length = 640
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/549 (48%), Positives = 370/549 (67%), Gaps = 17/549 (3%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y SE IQ+LEGLEA+RKRP MYIG+T RGLHHLV+EI+DN++DE A +A+ I++ L
Sbjct: 4 NYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKIILN 63
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
D S++V DNGRGIPI++HP T S LETV T+LHAGGKF S+ Y +SGGLHGVG SV
Sbjct: 64 KDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKF--DSNTYKISGGLHGVGASV 121
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS+ L+V V ++ +Y ++ G + T + V S GT + F PD+++F
Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILT---PIKEVGSTSETGTTVTFLPDEKIFKE 178
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLN- 311
F +TI RI++L FLN L I+L R+ED EK Y F G+++YV LN
Sbjct: 179 TTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDE--EKTVL--YQFNNGIKDYVLELNK 234
Query: 312 TDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 371
T PL+DV D I ++ LQ+ +D YS+ + + N+I T +GGTH EG + ++
Sbjct: 235 TIGTPLNDVFYVEGIEDNIVVEFGLQY-NDNYSENIFSFCNNINTHEGGTHEEGARLAIV 293
Query: 372 RTLNSLGKK--SKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
R +N+ K +K K + + + ++EG+T IIS+R P P++EGQT +L N EV+K+
Sbjct: 294 REINNYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKI 353
Query: 430 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 489
V V + L+ YL +P+ I+ K +LKA + A+RA+++ R+K V+ S SLPGKL+
Sbjct: 354 VSNIVGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLS 413
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC + + +E++IVEGDSAGGSAK GR+R+FQAILPLRGKILNVE+ + +++N EI
Sbjct: 414 DCETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEIN 473
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
++I ALG G+K ++F + LRY K+II+TDADVDGAHIR LLLTFFYRY K L + G IY
Sbjct: 474 SIITALGAGIK-DNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIY 532
Query: 610 VGVPPLYKV 618
+ PPLYKV
Sbjct: 533 IAQPPLYKV 541
>sp|P33769|GYRB_BORBU DNA gyrase subunit B OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrB PE=3 SV=4
Length = 634
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 273/550 (49%), Positives = 379/550 (68%), Gaps = 20/550 (3%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVL+GLEAVRKRP MYIGS GLHHLVYE++DN++DEA AG+ I+V +
Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
DN+++V DNGRGIP D+H SALE VLT LH+GGKF + Y VSGGLHGVG+SV
Sbjct: 62 LDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGT--YKVSGGLHGVGISV 119
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
VNALS LEV V RDG + Q +S+G P T V V GT++ F D ++F T
Sbjct: 120 VNALSSFLEVYVNRDGKIFRQTFSKGIP----TSKVEVVGESSVTGTKVTFLADSEIFET 175
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
+ ++ + + R++ELAFLN K+ I++ ED K + ++++F GG++ +V +L D K
Sbjct: 176 -LDYNFDVLEKRLKELAFLNDKIYISI--EDKRIGKEKSSKFYFEGGIKSFVDYLTNDSK 232
Query: 316 PLHD----VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 371
+ GF DV +++ L+W +++YSD +L + N+I T +GGTH+ G ++ LT
Sbjct: 233 AFQSEPYYIDGFINDV---IVNVGLKW-TESYSDNILSFVNNINTREGGTHVMGFRSGLT 288
Query: 372 RTLNSLGKKSKTVKDKDI-SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
+ +N K SK K KDI +L+G+ +EGLT +ISV+VP P+FEGQTK++LGN E+RK+V
Sbjct: 289 KAMNEAFKNSKISK-KDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIV 347
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
+ V E+L E + L+P +D+IL K++ A +A AA++AR+ R+K+ S +LPGKLAD
Sbjct: 348 EVVVYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLAD 407
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550
C+S P E EI+IVEGDSAGGSAK GR+R FQAILPL GK+LNVE+ E + N+++
Sbjct: 408 CTSKNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIP 467
Query: 551 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 610
+I +LG GV G+ F LRYHKIII+ DADVDG+HIRTLLL FF+RY + L + G IY+
Sbjct: 468 IIASLGAGV-GKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYI 526
Query: 611 GVPPLYKVCF 620
+PPLYK+ +
Sbjct: 527 AMPPLYKIKY 536
>sp|Q89B37|GYRB_BUCBP DNA gyrase subunit B OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=gyrB PE=3 SV=1
Length = 804
Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/550 (46%), Positives = 369/550 (67%), Gaps = 15/550 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+ TY S I++L+GL+AV+KRP MYIG+T GLHH+V+E++DN++DEA AG+ NI
Sbjct: 1 MKNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNII 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGV 191
V + DNS+S+ D+GRGIP D+H SA E ++TVLHAGGKF +S Y VSGGLHGV
Sbjct: 61 VTIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTS--YKVSGGLHGV 118
Query: 192 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
G+SVVNALS+ LE+ ++RD Y+Q Y G P TL+ + GT+IRFWP+ +
Sbjct: 119 GVSVVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSI----IGYTKITGTKIRFWPNLE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA-GGLEEYVQWL 310
+FT QF+ ++ R+REL+FLN ++I L D K NE F+ GGL+E++ +L
Sbjct: 175 IFTNVTQFNWEILSKRLRELSFLNSNVSIYL-----DDAKKHINENFYQQGGLKEFIIYL 229
Query: 311 NTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
N +KKP+H + F + + +++A+QW + + + + Y N+I DGGTH+ G +++
Sbjct: 230 NKNKKPIHSKIFYFSSKKNNVEVEIAMQW-NKGFQENIYCYTNNIPQQDGGTHLSGFRSA 288
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRT+N+ K +K I++ G+ REGLT IIS+++ +P+F QTK +L + EV+
Sbjct: 289 LTRTMNNYLDKEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSA 348
Query: 430 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 489
++ V E+L E+L +P +I++K + + + AA+RAR++ R+K L LPGKL+
Sbjct: 349 LESLVNEFLMEFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLS 408
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC P SEI++VEGDSAGGSAKQ R+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 409 DCQERDPALSEIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVT 468
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
LI ALG G+ ++ E LRYH+III+TDADVDG+HIRTLLLTFFYRY + G +Y
Sbjct: 469 TLITALGCGIGKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLY 528
Query: 610 VGVPPLYKVC 619
+ PPLYKV
Sbjct: 529 IAQPPLYKVT 538
>sp|P0A2I3|GYRB_SALTY DNA gyrase subunit B OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=gyrB PE=3 SV=2
Length = 804
Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/548 (47%), Positives = 370/548 (67%), Gaps = 13/548 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S +Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ +I
Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGV 191
V + ADNSVSV D+GRGIP +HP SA E ++TVLHAGGKF +S Y VSGGLHGV
Sbjct: 61 VTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGV 118
Query: 192 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
G+SVVNALS+ LE+ + RDG + Q Y G P L D+ GT +RFWP +
Sbjct: 119 GVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAV----TGDTDKTGTMVRFWPSHE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT +F++ +A R+REL+FLN ++I LR D + + + + GG++ +V++LN
Sbjct: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLN 230
Query: 312 TDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+H ++ F + DGI +++ALQW +D + + + + N+I DGGTH+ G +A++
Sbjct: 231 KNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +L + EV+ V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
+Q + E L+EYL +P ++ K + A +A AA+RAR++ R+K L + LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550
C P SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469
Query: 551 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 610
LI ALG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR + + G +Y+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529
Query: 611 GVPPLYKV 618
PPLYKV
Sbjct: 530 AQPPLYKV 537
>sp|P0A2I4|GYRB_SALTI DNA gyrase subunit B OS=Salmonella typhi GN=gyrB PE=3 SV=2
Length = 804
Score = 510 bits (1314), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/548 (47%), Positives = 370/548 (67%), Gaps = 13/548 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S +Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ +I
Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGV 191
V + ADNSVSV D+GRGIP +HP SA E ++TVLHAGGKF +S Y VSGGLHGV
Sbjct: 61 VTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGV 118
Query: 192 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
G+SVVNALS+ LE+ + RDG + Q Y G P L D+ GT +RFWP +
Sbjct: 119 GVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAV----TGDTDKTGTMVRFWPSHE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT +F++ +A R+REL+FLN ++I LR D + + + + GG++ +V++LN
Sbjct: 175 TFTNVTEFEYEILAKRLRELSFLNSGVSIRLR----DKRDGKEDHFHYEGGIKAFVEYLN 230
Query: 312 TDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370
+K P+H ++ F + DGI +++ALQW +D + + + + N+I DGGTH+ G +A++
Sbjct: 231 KNKTPIHPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 289
Query: 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 430
TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +L + EV+ V
Sbjct: 290 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 349
Query: 431 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 490
+Q + E L+EYL +P ++ K + A +A AA+RAR++ R+K L + LPGKLAD
Sbjct: 350 EQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLAD 409
Query: 491 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550
C P SE+++VEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 410 CQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVAT 469
Query: 551 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 610
LI ALG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR + + G +Y+
Sbjct: 470 LITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYI 529
Query: 611 GVPPLYKV 618
PPLYKV
Sbjct: 530 AQPPLYKV 537
>sp|Q9ZAQ6|GYRB_MYCAT DNA gyrase subunit B OS=Mycoplasma arthritidis GN=gyrB PE=3 SV=1
Length = 638
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/559 (48%), Positives = 374/559 (66%), Gaps = 21/559 (3%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
K+ +SK YG++ IQ LEGLEAVRKRP MYIGS G RGLHHL++EI+DN+VDEA AG+A+
Sbjct: 3 KQEEISK-YGAKNIQFLEGLEAVRKRPGMYIGSIGFRGLHHLIWEIVDNSVDEAMAGFAT 61
Query: 129 NIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGL 188
NIEV L +N + V DNGRG+P+D+HP T KSA+ET+LTVL+AGGKF S+ Y VSGGL
Sbjct: 62 NIEVKLHPNNEIEVIDNGRGMPVDIHPTTKKSAVETILTVLYAGGKF--DSTNYKVSGGL 119
Query: 189 HGVGLSVVNALSESLEVTVWRDGMEYHQKY-SRGKPVTTLTCHVLPVDSKDRQGTRIRFW 247
HGVG+SVVNALS+S EV V R G Y+QKY + G PV L V+ +KD GTRI+F
Sbjct: 120 HGVGVSVVNALSDSFEVWVKRGGKFYYQKYINGGHPVKPL--EVIGEVNKDETGTRIKFH 177
Query: 248 PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 307
PD Q+ + FD TI +++A+LN L+I+ D KN + F GG+ +YV
Sbjct: 178 PDYQIMD-KVAFDFGTIIDHAKQIAYLNKGLSISCE----DITKNTIRNFCFEGGIIDYV 232
Query: 308 QWLNTDKKPL-HDVV----GFRK---DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDG 359
LN KK + D++ FR + + +++A+Q+ ++ Y+ ++ YAN+I+T +G
Sbjct: 233 SELNRGKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQY-NETYTSNIVSYANNIQTGEG 291
Query: 360 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 419
GTH +G +LTR N + +K K+ + +S E ++GL IIS++ +P FEGQTK
Sbjct: 292 GTHEQGFYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKG 351
Query: 420 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 479
+L N + R ++ + E L Y+ +P +I+ K L ++ LAA AR+ R+K
Sbjct: 352 KLENKDARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGS 411
Query: 480 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 539
+LPGKLADCSS E E+FIVEG+SAGGSAK GRDR QAILPLRGKI+N E++D
Sbjct: 412 EFGNLPGKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDF 471
Query: 540 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 599
++ N+E+ ++I ALG G+ E F L+YHKI+I+TDADVDGAHI TLLLTFFYRY
Sbjct: 472 TSVMSNKEVSSMIHALGTGITDE-FNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYM 530
Query: 600 KTLFDEGCIYVGVPPLYKV 618
+ L + G +Y+ PPLYK+
Sbjct: 531 RPLIEYGFVYIAQPPLYKI 549
>sp|Q1RHT8|GYRB_RICBR DNA gyrase subunit B OS=Rickettsia bellii (strain RML369-C) GN=gyrB
PE=3 SV=1
Length = 808
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/554 (48%), Positives = 378/554 (68%), Gaps = 12/554 (2%)
Query: 68 FKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGY 126
F+E +YG++ I+VL+GLEAVRKRP MYIG G GLHH++YE++DNA+DEA AGY
Sbjct: 4 FEEKLNESSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGY 63
Query: 127 ASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 186
+ V L + SV+V+DNGRGIP+++H SA E ++T LHAGGKF +S Y VSG
Sbjct: 64 CDLVRVVLNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNS--YKVSG 121
Query: 187 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246
GLHGVG+SVVNALS+ LE+ +WR+ E+ +++ G +T V+ ++ D++GT + F
Sbjct: 122 GLHGVGVSVVNALSDWLELRIWRNNTEHLIRFNNG--ITEAPLAVVK-ENVDKKGTEVTF 178
Query: 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEY 306
+P + FT I+FD + I R+RELAFLN + I L D+ E+ + E+++ GG+E Y
Sbjct: 179 FPSVETFTN-IEFDFSIIEHRLRELAFLNSGVKILLT--DNRFEEVKEVEFYYTGGIEAY 235
Query: 307 VQWLNTDKKPLHDVVGFRKD--VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIE 364
V++L+ K +H + D GI+++LA+ W +D+Y + +L + N+IR DGGTH+
Sbjct: 236 VKYLDRAKHAVHSCIVVNADNTESGISLELAMHW-NDSYHENILCFTNNIRQRDGGTHLS 294
Query: 365 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNP 424
K+ LTR + + + + K + SGE REG+ C++SV+VP+P+F QTK +L +
Sbjct: 295 AFKSGLTRVITAYLENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSS 354
Query: 425 EVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSL 484
EVR +V+ +V + E+ E HP I++K + A A AA++AR+L R+KSVL S+L
Sbjct: 355 EVRPIVENAVYTKVLEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNL 414
Query: 485 PGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYK 544
PGKLADC + P SE+FIVEGDSAGG+AKQGRD + QAILPLRGKILNVER M
Sbjct: 415 PGKLADCHAKDPAVSELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLG 474
Query: 545 NEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD 604
+++I LI ALG GV +F E LRYHK+II+TDADVDG+HIRTLLLTFFYR+ L +
Sbjct: 475 SDQIGTLITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELIN 534
Query: 605 EGCIYVGVPPLYKV 618
+G +Y+ PPLYKV
Sbjct: 535 KGYLYIAQPPLYKV 548
>sp|Q4UKX5|GYRB_RICFE DNA gyrase subunit B OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=gyrB PE=3 SV=1
Length = 808
Score = 508 bits (1308), Expect = e-143, Method: Compositional matrix adjust.
Identities = 277/562 (49%), Positives = 380/562 (67%), Gaps = 28/562 (4%)
Query: 66 EAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQA 124
E F E+ +YG++ I+VL+GLEAVRKRP MYIG G GLHH++YE++DNA+DE+ A
Sbjct: 6 EKFNES----SYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDESLA 61
Query: 125 GYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 184
GY + V L + SV+V+DNGRGIP+++H SA E ++T LHAGGKF +S Y V
Sbjct: 62 GYCDLVRVTLNKNGSVTVSDNGRGIPVEIHQEEGISAAEVIMTQLHAGGKFDQNS--YKV 119
Query: 185 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 244
SGGLHGVG+SVVNALSE LE+ +WR+ EY +++ G +T V+ D +++GT +
Sbjct: 120 SGGLHGVGVSVVNALSEWLELRIWRNNKEYLIRFNNG--ITEAPLAVVNEDI-NKKGTEV 176
Query: 245 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 304
F+P + FT I+FD TI R+RELAFLN + I L D+ E+ + E+++ GG+E
Sbjct: 177 TFFPSVETFTN-IEFDFGTIEHRLRELAFLNSGVKILLV--DNRFEEAKEVEFYYTGGIE 233
Query: 305 EYVQWLNTDKKPLHD--VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362
YV++++ K +H VV GI+++LA+ W +D+Y + +L + N+IR DGGTH
Sbjct: 234 AYVKYIDRAKHAVHPCIVVNTENTESGISLELAMHW-NDSYHENILCFTNNIRQRDGGTH 292
Query: 363 IEGVKASLTRTLNS------LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 416
+ K+++TR + S L KKSK SGE REGL C++SV+VP+P+F Q
Sbjct: 293 LSAFKSAITRVITSYLDTTGLNKKSKN------DFSGEDTREGLCCVLSVKVPDPKFSSQ 346
Query: 417 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 476
TK +L + EVR VV+ +V + E+ E HP +I++K + A A AA++AR+L R+K
Sbjct: 347 TKDKLVSSEVRPVVENAVYTKVLEWFEEHPAESKAIIAKIMEAANAREAARKARELTRRK 406
Query: 477 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 536
S L S+LPGKLADC + P SE+FIVEGDSAGG+AKQGRD + QAILPLRGKILNVER
Sbjct: 407 SALEVSNLPGKLADCHAKDPAISELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVER 466
Query: 537 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 596
M +++I LI ALG GV +F E LRYHK+II+TDADVDG+HIRTLLLTFFY
Sbjct: 467 ARFDKMLGSDQIGTLITALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFY 526
Query: 597 RYQKTLFDEGCIYVGVPPLYKV 618
R+ L ++G +Y+ PPLYKV
Sbjct: 527 RHMPELINKGYLYIAQPPLYKV 548
>sp|Q9KVX3|GYRB_VIBCH DNA gyrase subunit B OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=gyrB PE=3 SV=1
Length = 805
Score = 507 bits (1306), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/549 (48%), Positives = 373/549 (67%), Gaps = 14/549 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AGY +I
Sbjct: 1 MSNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGV 191
V + DNSVSV+D+GRGIP ++HP SA E ++TVLHAGGKF +S Y VSGGLHGV
Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGV 118
Query: 192 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
G+SVVNALSE + +T++R G + Q Y G P L V +R GT +RFWP Q
Sbjct: 119 GVSVVNALSEKVLLTIYRGGKIHSQTYHHGVPQAPLAV----VGETERTGTTVRFWPSAQ 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
FT I+F ++ +A R+REL+FLN ++I L E E+++ + + + GG++ +V LN
Sbjct: 175 TFTN-IEFHYDILAKRLRELSFLNSGVSIKLTDER---EEDKKDHFMYEGGIQAFVTHLN 230
Query: 312 TDKKPLHD-VVGFRKD-VDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 369
+K P+H+ V F ++ DGI++++A+QW +D + + + + N+I DGGTH+ G + +
Sbjct: 231 RNKTPIHEKVFHFNQEREDGISVEVAMQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRGA 289
Query: 370 LTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 429
LTRTLN+ K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+
Sbjct: 290 LTRTLNNYMDKEGFSKKAQAATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSA 349
Query: 430 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 489
V+ ++ E L ++L +P ++ SK + A +A AA++AR++ R+K L + LPGKLA
Sbjct: 350 VESAMNEKLADFLAENPSEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLA 409
Query: 490 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549
DC P SE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 410 DCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 469
Query: 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 609
LI ALG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR L + G IY
Sbjct: 470 TLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIY 529
Query: 610 VGVPPLYKV 618
+ PPLYKV
Sbjct: 530 IAQPPLYKV 538
>sp|P29435|GYRB_BUCAP DNA gyrase subunit B OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=gyrB PE=3 SV=3
Length = 803
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/551 (46%), Positives = 374/551 (67%), Gaps = 25/551 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
TY S +I++L GL+AVRKRP MYIG T GLHH+V+EI+DN++DEA AG+ I+V +
Sbjct: 4 TYDSSKIKILRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIVDNSIDEALAGFCKEIKVVI 63
Query: 135 LADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 194
+DNSVS+ D+GRGIP D+HP SA E ++TVLH+GGKF +S Y +SGGLHGVG+S
Sbjct: 64 HSDNSVSIKDDGRGIPTDIHPEEKISAAEVIMTVLHSGGKFDNAS--YKISGGLHGVGIS 121
Query: 195 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 254
VVNALSE LE+ ++++ +Y Q+Y G P + L + + + GT IRFWP ++FT
Sbjct: 122 VVNALSEKLELIIYKNKKKYRQQYKNGNPESPLCI----IGATEITGTYIRFWPSYKIFT 177
Query: 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314
QF + ++ R+REL+FLN + I L+ D N +Y + GG++ ++++LN +K
Sbjct: 178 NKTQFQYEILSKRLRELSFLNSNILIHLK----DNRTNLEEKYHYKGGIKAFIKFLNKNK 233
Query: 315 KPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373
P++ ++ FR + I +++A+QW ++++ + +L + N+I DGGTH+ G +A +TRT
Sbjct: 234 FPINLNIFYFRCIKNQIELEIAIQW-NNSHQENILCFTNNIPQKDGGTHLSGFRAGITRT 292
Query: 374 LN------SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 427
LN KK+KT+ ++GE REGLT IIS+++P+P+F QTK +L + EV+
Sbjct: 293 LNLHIEREGYNKKNKTI------ITGEDTREGLTAIISIKIPDPKFSSQTKDKLVSSEVK 346
Query: 428 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGK 487
V++ + E L EYL +P I+ K +++ K AA+RAR++ ++K L +LPGK
Sbjct: 347 SVIESLINENLIEYLLENPIDAKFIIQKIINSAKIREAARRAREINKKKGTLDLGTLPGK 406
Query: 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 547
L+DC P+ SEI++VEGDSAGGSAKQGR+R+ QAILPL+GKILNV++ + ++E
Sbjct: 407 LSDCQENDPKLSEIYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVQKTKFDKIILSQE 466
Query: 548 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGC 607
+ +LI ALG + ++ + LRY+ III+TDADVDGAHIRTLLLTFFYR L +G
Sbjct: 467 LTSLITALGCSITKSEYSLDKLRYNHIIIMTDADVDGAHIRTLLLTFFYRQLPELIKKGY 526
Query: 608 IYVGVPPLYKV 618
+Y+ PPLYKV
Sbjct: 527 VYIAQPPLYKV 537
>sp|Q59192|PARE_BACSU DNA topoisomerase 4 subunit B OS=Bacillus subtilis (strain 168)
GN=parE PE=3 SV=2
Length = 655
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 271/548 (49%), Positives = 358/548 (65%), Gaps = 19/548 (3%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE AG+ +I V +
Sbjct: 9 YNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHK 68
Query: 137 DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 196
DNS+SV D GRG+P +H K E +LTVLHAGGKFG GY SGGLHGVG SVV
Sbjct: 69 DNSISVQDRGRGMPTGMHK-LGKPTPEVILTVLHAGGKFG--QGGYKTSGGLHGVGASVV 125
Query: 197 NALSESLEVTVWRDGMEYHQKYSR-GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 255
NALSE L VT+ RDG Y Q++ GKPVT+L + + GT F PD +F+T
Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLE----KIGKTKKTGTLTHFKPDPTMFST 181
Query: 256 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315
++ T++ R+RE AFL L I L E +D Q +++ G+E +V +LN +K
Sbjct: 182 TT-YNFETLSERLRESAFLLKGLKIELIDERND----QREVFYYENGIEAFVAYLNEEKD 236
Query: 316 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 375
L +VV F + I +D A Q+ +D YS+ +L + N++RT DGGTH G K ++TR N
Sbjct: 237 VLSEVVSFEGEHHSIEVDFAFQF-NDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFN 295
Query: 376 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQS 433
+K +K+KD +L G +REGL+ IISVR+P +FEGQTK +LG E R VD
Sbjct: 296 EYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAI 355
Query: 434 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADC 491
V E L +LE + D ++ K++ A +A AA++AR+ R +K ++L GKL
Sbjct: 356 VSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPA 415
Query: 492 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551
S P ++E+++VEGDSAGGSAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +
Sbjct: 416 GSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTI 475
Query: 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 611
I A+G GV G DF + + Y KIII+TDAD DGAHI+ LLLTFFYRY K L + G +++
Sbjct: 476 IHAIGGGV-GADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIA 534
Query: 612 VPPLYKVC 619
+PPLYKV
Sbjct: 535 LPPLYKVS 542
>sp|P0CAX1|GYRB_CAUCR DNA gyrase subunit B OS=Caulobacter crescentus (strain ATCC 19089 /
CB15) GN=gyrB PE=3 SV=1
Length = 805
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 276/553 (49%), Positives = 373/553 (67%), Gaps = 17/553 (3%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
YG++ I+VL+GL+AVRKRP MYIG T GLHH+VYE++DNA+DEA AG+A+ ++V L
Sbjct: 10 YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQVILN 69
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
AD SV+V D+GRGIP+D+H SA E ++T LHAGGKF +S Y VSGGLHGVG+SV
Sbjct: 70 ADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNS--YKVSGGLHGVGVSV 127
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTL-TCHVLPVDSKDRQ------GTRIRFWP 248
VNALS+ LE+ + R+G + ++ RG VT+L PV ++ + GT + F+P
Sbjct: 128 VNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFFP 187
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-DSDPEKNQYNEYFFAGGLEEYV 307
K F I+FD T+ R+RELAFLN +TI + D +P + + F+ GG+E +V
Sbjct: 188 SKDTFAF-IEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKL---FYEGGIEAFV 243
Query: 308 QWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
+ L+ K PL + + D + IDLAL W +D+Y + ML + N+I DGGTH+
Sbjct: 244 RHLDKAKTPLLKAPIAVKGVKDKVEIDLAL-WWNDSYHEQMLCFTNNIPQRDGGTHLSAF 302
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
+A+LTR + S + S +K + +SL GE REGLTC++SV+VP+P+F QTK +L + EV
Sbjct: 303 RAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 362
Query: 427 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 486
R V+ V E L+ + E HP+ +I++K A A AA++AR+L R+KS L +SLPG
Sbjct: 363 RPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPG 422
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 546
KLADCS P +SEIFIVEGDSAGGSAKQ R+R QA+LPLRGKILNVER M ++
Sbjct: 423 KLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSD 482
Query: 547 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 606
+I LI ALG G+ +DF + +RYHKI+++TDADVDGAHIRTLLLTFFYR L + G
Sbjct: 483 QIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERG 542
Query: 607 CIYVGVPPLYKVC 619
IY+ PPLYK
Sbjct: 543 YIYIAQPPLYKAS 555
>sp|B8GXQ0|GYRB_CAUCN DNA gyrase subunit B OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=gyrB PE=3 SV=1
Length = 805
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 276/553 (49%), Positives = 373/553 (67%), Gaps = 17/553 (3%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
YG++ I+VL+GL+AVRKRP MYIG T GLHH+VYE++DNA+DEA AG+A+ ++V L
Sbjct: 10 YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQVILN 69
Query: 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 195
AD SV+V D+GRGIP+D+H SA E ++T LHAGGKF +S Y VSGGLHGVG+SV
Sbjct: 70 ADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNS--YKVSGGLHGVGVSV 127
Query: 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTL-TCHVLPVDSKDRQ------GTRIRFWP 248
VNALS+ LE+ + R+G + ++ RG VT+L PV ++ + GT + F+P
Sbjct: 128 VNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFFP 187
Query: 249 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-DSDPEKNQYNEYFFAGGLEEYV 307
K F I+FD T+ R+RELAFLN +TI + D +P + + F+ GG+E +V
Sbjct: 188 SKDTFAF-IEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKL---FYEGGIEAFV 243
Query: 308 QWLNTDKKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 366
+ L+ K PL + + D + IDLAL W +D+Y + ML + N+I DGGTH+
Sbjct: 244 RHLDKAKTPLLKAPIAVKGVKDKVEIDLAL-WWNDSYHEQMLCFTNNIPQRDGGTHLSAF 302
Query: 367 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 426
+A+LTR + S + S +K + +SL GE REGLTC++SV+VP+P+F QTK +L + EV
Sbjct: 303 RAALTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEV 362
Query: 427 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 486
R V+ V E L+ + E HP+ +I++K A A AA++AR+L R+KS L +SLPG
Sbjct: 363 RPAVEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPG 422
Query: 487 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 546
KLADCS P +SEIFIVEGDSAGGSAKQ R+R QA+LPLRGKILNVER M ++
Sbjct: 423 KLADCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSD 482
Query: 547 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 606
+I LI ALG G+ +DF + +RYHKI+++TDADVDGAHIRTLLLTFFYR L + G
Sbjct: 483 QIGTLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERG 542
Query: 607 CIYVGVPPLYKVC 619
IY+ PPLYK
Sbjct: 543 YIYIAQPPLYKAS 555
>sp|O51859|GYRB_VIBPA DNA gyrase subunit B OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=gyrB PE=3 SV=2
Length = 805
Score = 504 bits (1298), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/550 (48%), Positives = 375/550 (68%), Gaps = 16/550 (2%)
Query: 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIE 131
+S+ Y S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DN++DEA AG+ +I
Sbjct: 1 MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV 60
Query: 132 VALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGV 191
V + DNSVSV+D+GRGIP ++HP SA E ++TVLHAGGKF +S Y VSGGLHGV
Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGV 118
Query: 192 GLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251
G+SVVNALSE + +T+ R G + Q Y G+P L V D+ GT+IRFWP +
Sbjct: 119 GVSVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAV----VGDTDKTGTQIRFWPSAE 174
Query: 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311
F+ +F ++ +A R+REL+FLN ++I L E E ++ + + + GG++ +VQ LN
Sbjct: 175 TFSNT-EFHYDILAKRLRELSFLNSGVSIKLIDE---READKQDHFMYEGGIQAFVQHLN 230
Query: 312 TDKKPLHDVVGFRKDV---DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368
T+K P+ + + F D+ DGI++++A+QW +D + + + + N+I DGGTH+ G +A
Sbjct: 231 TNKTPIIEKI-FHFDLEREDGISVEVAMQW-NDGFQENIFCFTNNIPQRDGGTHLAGFRA 288
Query: 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 428
+LTRTLNS K K + SG+ REGLT ++SV+VP+P+F QTK +L + EV+
Sbjct: 289 ALTRTLNSFMDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKS 348
Query: 429 VVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKL 488
V+ ++ E L+E+L +P + SK + A +A AA++AR++ R+K L + LPGKL
Sbjct: 349 AVESAMGEKLSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKL 408
Query: 489 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEI 548
ADC P SE++IVEGDSAGGSAKQGR+R+ QAILPL+GKILNVE+ M ++E+
Sbjct: 409 ADCQEKDPALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEV 468
Query: 549 QNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 608
LI ALG G+ +++ + LRYH III+TDADVDG+HIRTLLLTFFYR L + G +
Sbjct: 469 ATLITALGCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYV 528
Query: 609 YVGVPPLYKV 618
Y+ PPLYKV
Sbjct: 529 YIAQPPLYKV 538
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,389,118
Number of Sequences: 539616
Number of extensions: 9614453
Number of successful extensions: 29408
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 28322
Number of HSP's gapped (non-prelim): 233
length of query: 622
length of database: 191,569,459
effective HSP length: 124
effective length of query: 498
effective length of database: 124,657,075
effective search space: 62079223350
effective search space used: 62079223350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)