Query 007003
Match_columns 622
No_of_seqs 231 out of 1578
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 17:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0187 GyrB Type IIA topoisom 100.0 3E-182 6E-187 1476.2 47.4 535 74-620 3-539 (635)
2 PTZ00109 DNA gyrase subunit b; 100.0 6E-170 1E-174 1434.6 49.5 542 74-620 97-729 (903)
3 PRK14939 gyrB DNA gyrase subun 100.0 9E-169 2E-173 1430.7 53.3 536 73-620 3-540 (756)
4 TIGR01058 parE_Gpos DNA topois 100.0 2E-167 5E-172 1409.0 52.8 533 75-620 3-540 (637)
5 PRK05644 gyrB DNA gyrase subun 100.0 5E-160 1E-164 1354.1 54.9 536 74-620 5-541 (638)
6 PRK05559 DNA topoisomerase IV 100.0 1E-159 3E-164 1350.7 53.6 530 73-620 4-536 (631)
7 TIGR01055 parE_Gneg DNA topois 100.0 2E-158 3E-163 1337.4 53.7 529 74-620 1-530 (625)
8 TIGR01059 gyrB DNA gyrase, B s 100.0 2E-157 4E-162 1341.1 54.9 533 77-620 1-534 (654)
9 PHA02569 39 DNA topoisomerase 100.0 2E-149 4E-154 1256.5 46.3 489 80-620 2-524 (602)
10 smart00433 TOP2c Topoisomerase 100.0 2E-147 3E-152 1246.6 48.8 500 106-620 1-502 (594)
11 PLN03128 DNA topoisomerase 2; 100.0 1E-145 3E-150 1281.3 49.7 510 79-620 4-553 (1135)
12 PTZ00108 DNA topoisomerase 2-l 100.0 2E-145 5E-150 1287.0 49.3 510 79-620 7-561 (1388)
13 PLN03237 DNA topoisomerase 2; 100.0 3E-143 7E-148 1262.3 50.4 503 78-620 28-577 (1465)
14 KOG0355 DNA topoisomerase type 100.0 8E-100 2E-104 842.8 26.6 510 79-619 5-548 (842)
15 cd03366 TOPRIM_TopoIIA_GyrB TO 100.0 1.5E-58 3.3E-63 409.1 11.4 114 499-613 1-114 (114)
16 cd01030 TOPRIM_TopoIIA_like TO 100.0 2.4E-57 5.1E-62 403.8 11.0 115 499-613 1-115 (115)
17 cd03365 TOPRIM_TopoIIA TOPRIM_ 100.0 3.4E-54 7.5E-59 385.8 8.6 115 499-613 1-120 (120)
18 cd00822 TopoII_Trans_DNA_gyras 100.0 2.3E-41 4.9E-46 327.2 18.8 170 301-471 1-171 (172)
19 PF00204 DNA_gyraseB: DNA gyra 100.0 2.6E-40 5.6E-45 320.5 18.3 168 302-471 1-172 (173)
20 cd03481 TopoIIA_Trans_ScTopoII 100.0 3.3E-30 7.1E-35 244.0 15.4 146 302-459 2-150 (153)
21 PRK00095 mutL DNA mismatch rep 99.9 1.5E-26 3.3E-31 263.9 25.8 260 104-414 20-295 (617)
22 COG1389 DNA topoisomerase VI, 99.9 1.3E-22 2.8E-27 214.8 22.9 332 80-445 10-465 (538)
23 TIGR01052 top6b DNA topoisomer 99.9 2.4E-22 5.3E-27 220.6 12.6 284 80-412 2-307 (488)
24 COG0323 MutL DNA mismatch repa 99.8 1.2E-20 2.7E-25 215.2 18.1 259 105-410 22-296 (638)
25 PRK04184 DNA topoisomerase VI 99.8 7.5E-20 1.6E-24 203.0 12.3 283 80-412 10-313 (535)
26 TIGR00585 mutl DNA mismatch re 99.8 7.7E-18 1.7E-22 178.0 24.9 261 104-414 20-301 (312)
27 PRK14867 DNA topoisomerase VI 99.7 5.5E-17 1.2E-21 183.4 16.5 206 80-308 10-232 (659)
28 PRK14868 DNA topoisomerase VI 99.6 6.3E-16 1.4E-20 175.2 12.8 251 80-370 20-286 (795)
29 KOG1978 DNA mismatch repair pr 99.5 5.1E-14 1.1E-18 156.6 14.1 236 104-382 18-272 (672)
30 KOG1979 DNA mismatch repair pr 99.3 3E-12 6.6E-17 139.5 9.2 160 106-285 27-197 (694)
31 PF01751 Toprim: Toprim domain 99.1 2.9E-11 6.3E-16 106.8 3.1 97 500-611 1-98 (100)
32 PRK05218 heat shock protein 90 99.0 3.3E-08 7.1E-13 113.6 23.5 157 108-284 28-210 (613)
33 KOG1977 DNA mismatch repair pr 98.8 4E-09 8.7E-14 117.2 5.6 174 92-288 12-197 (1142)
34 PF02518 HATPase_c: Histidine 98.8 4E-09 8.7E-14 93.8 4.5 87 104-207 3-92 (111)
35 PF13589 HATPase_c_3: Histidin 98.8 1.4E-09 3.1E-14 101.5 1.6 97 107-219 3-106 (137)
36 cd00329 TopoII_MutL_Trans MutL 98.8 1.6E-08 3.5E-13 89.0 7.6 100 304-421 2-106 (107)
37 PRK14083 HSP90 family protein; 98.5 1.4E-06 3E-11 99.7 16.0 159 107-284 24-196 (601)
38 COG0326 HtpG Molecular chapero 98.3 1.8E-05 4E-10 89.3 17.8 130 111-254 32-186 (623)
39 PTZ00272 heat shock protein 83 98.2 8.4E-06 1.8E-10 94.5 11.6 154 110-282 29-205 (701)
40 cd00075 HATPase_c Histidine ki 97.8 6E-05 1.3E-09 63.5 7.7 79 107-202 1-82 (103)
41 PTZ00130 heat shock protein 90 97.8 0.00011 2.3E-09 85.9 11.4 156 111-283 93-271 (814)
42 smart00387 HATPase_c Histidine 97.4 0.00071 1.5E-08 57.8 7.6 83 105-204 4-89 (111)
43 COG3290 CitA Signal transducti 97.3 0.00035 7.5E-09 77.8 6.1 78 106-203 427-509 (537)
44 PF13581 HATPase_c_2: Histidin 97.3 0.0014 3E-08 59.5 8.7 90 106-217 31-124 (125)
45 PRK11086 sensory histidine kin 97.2 0.001 2.2E-08 74.7 8.6 76 106-201 433-511 (542)
46 TIGR02938 nifL_nitrog nitrogen 97.2 0.0015 3.2E-08 71.7 9.3 81 106-203 387-472 (494)
47 TIGR01386 cztS_silS_copS heavy 97.1 0.0013 2.7E-08 72.0 8.3 82 105-202 352-436 (457)
48 PRK04069 serine-protein kinase 97.1 0.0018 4E-08 62.1 8.3 93 105-214 41-137 (161)
49 PRK10364 sensor protein ZraS; 97.1 0.0012 2.6E-08 73.1 7.7 76 105-202 347-425 (457)
50 TIGR01925 spIIAB anti-sigma F 97.0 0.0041 9E-08 57.3 9.2 82 105-206 38-123 (137)
51 PRK11006 phoR phosphate regulo 97.0 0.0021 4.6E-08 70.6 8.3 83 104-202 315-400 (430)
52 PRK10604 sensor protein RstB; 96.9 0.002 4.4E-08 71.1 7.7 82 104-203 317-401 (433)
53 COG3920 Signal transduction hi 96.9 0.006 1.3E-07 61.8 10.2 94 95-219 111-214 (221)
54 PRK15053 dpiB sensor histidine 96.9 0.0038 8.3E-08 70.5 9.9 82 104-202 430-516 (545)
55 PRK09303 adaptive-response sen 96.8 0.0035 7.5E-08 68.2 8.3 80 104-201 270-353 (380)
56 PRK03660 anti-sigma F factor; 96.8 0.01 2.2E-07 55.3 10.2 83 105-207 38-124 (146)
57 PRK10549 signal transduction h 96.8 0.0024 5.2E-08 70.4 6.9 83 105-203 351-436 (466)
58 PRK11100 sensory histidine kin 96.7 0.0058 1.3E-07 67.0 9.2 81 106-203 368-451 (475)
59 PRK10337 sensor protein QseC; 96.7 0.0039 8.4E-08 68.6 7.6 78 106-203 352-429 (449)
60 COG4191 Signal transduction hi 96.7 0.0046 1E-07 69.6 8.0 49 105-153 496-547 (603)
61 COG2205 KdpD Osmosensitive K+ 96.6 0.004 8.7E-08 72.3 7.4 74 108-199 777-853 (890)
62 PRK09835 sensor kinase CusS; P 96.6 0.0075 1.6E-07 66.7 8.8 82 104-201 373-457 (482)
63 TIGR03785 marine_sort_HK prote 96.5 0.0059 1.3E-07 72.0 8.1 82 105-202 596-680 (703)
64 TIGR01924 rsbW_low_gc serine-p 96.5 0.019 4E-07 55.1 10.1 91 106-213 42-136 (159)
65 PRK11073 glnL nitrogen regulat 96.5 0.0072 1.6E-07 64.0 8.0 77 104-201 235-324 (348)
66 PRK10755 sensor protein BasS/P 96.5 0.007 1.5E-07 64.5 7.9 78 105-202 246-326 (356)
67 PRK10815 sensor protein PhoQ; 96.3 0.012 2.6E-07 66.3 8.6 76 105-202 377-455 (485)
68 TIGR02966 phoR_proteo phosphat 96.3 0.011 2.5E-07 61.1 7.7 81 105-201 228-311 (333)
69 TIGR02916 PEP_his_kin putative 96.2 0.0096 2.1E-07 69.8 7.4 77 105-202 578-657 (679)
70 PRK09470 cpxA two-component se 96.2 0.012 2.6E-07 64.6 7.5 79 105-201 352-433 (461)
71 PRK11644 sensory histidine kin 96.1 0.023 4.9E-07 64.3 9.8 44 106-152 410-456 (495)
72 PRK09467 envZ osmolarity senso 96.1 0.021 4.5E-07 62.4 9.0 78 106-203 331-411 (435)
73 PRK13837 two-component VirA-li 96.0 0.03 6.5E-07 67.2 10.7 94 105-220 559-675 (828)
74 PRK11360 sensory histidine kin 96.0 0.017 3.8E-07 64.8 7.9 75 106-202 500-578 (607)
75 PRK15347 two component system 95.9 0.019 4.1E-07 69.1 8.3 78 105-203 512-592 (921)
76 COG3850 NarQ Signal transducti 95.9 0.016 3.4E-07 64.7 6.6 47 106-155 481-530 (574)
77 PRK11466 hybrid sensory histid 95.8 0.026 5.6E-07 68.1 9.0 95 104-219 559-661 (914)
78 PRK10490 sensor protein KdpD; 95.8 0.021 4.6E-07 69.2 8.1 82 104-203 776-860 (895)
79 PRK13560 hypothetical protein; 95.6 0.031 6.7E-07 65.8 8.4 46 107-152 712-762 (807)
80 COG0642 BaeS Signal transducti 95.5 0.021 4.6E-07 58.0 5.7 47 104-153 226-275 (336)
81 TIGR02956 TMAO_torS TMAO reduc 95.5 0.043 9.3E-07 66.6 9.0 82 103-203 576-661 (968)
82 PRK13557 histidine kinase; Pro 95.3 0.1 2.3E-06 58.2 11.0 96 105-220 276-394 (540)
83 PRK11091 aerobic respiration c 95.3 0.051 1.1E-06 64.5 8.7 100 104-219 396-504 (779)
84 COG2172 RsbW Anti-sigma regula 95.2 0.13 2.8E-06 48.9 9.4 84 106-211 40-130 (146)
85 COG4585 Signal transduction hi 95.1 0.035 7.5E-07 60.0 6.0 47 105-154 278-327 (365)
86 PRK10841 hybrid sensory kinase 95.0 0.052 1.1E-06 66.1 7.7 82 105-203 561-645 (924)
87 PRK11107 hybrid sensory histid 94.8 0.06 1.3E-06 64.8 7.5 100 105-219 407-517 (919)
88 PRK10600 nitrate/nitrite senso 94.8 0.054 1.2E-06 62.0 6.7 43 107-152 470-515 (569)
89 COG5002 VicK Signal transducti 94.7 0.044 9.6E-07 58.4 5.2 94 90-199 325-422 (459)
90 PRK10618 phosphotransfer inter 94.4 0.22 4.7E-06 60.4 11.0 99 103-219 562-671 (894)
91 PRK10547 chemotaxis protein Ch 94.4 0.12 2.7E-06 60.4 8.4 43 111-153 390-445 (670)
92 PRK13559 hypothetical protein; 94.3 0.15 3.2E-06 54.5 8.4 47 106-152 267-319 (361)
93 COG5000 NtrY Signal transducti 93.7 0.08 1.7E-06 60.1 4.9 56 98-153 592-655 (712)
94 PRK09959 hybrid sensory histid 93.6 0.17 3.7E-06 63.0 8.3 99 104-219 826-935 (1197)
95 KOG0787 Dehydrogenase kinase [ 93.5 0.19 4.1E-06 54.1 7.1 106 85-203 243-358 (414)
96 COG3852 NtrB Signal transducti 92.7 0.46 9.9E-06 50.2 8.3 76 104-199 239-329 (363)
97 PRK10935 nitrate/nitrite senso 92.6 0.16 3.4E-06 57.7 5.4 43 107-152 472-518 (565)
98 KOG0020 Endoplasmic reticulum 92.0 0.71 1.5E-05 51.2 9.0 149 110-272 99-271 (785)
99 cd00188 TOPRIM Topoisomerase-p 91.7 0.22 4.7E-06 40.3 3.8 71 500-596 2-72 (83)
100 PF14501 HATPase_c_5: GHKL dom 91.5 1.4 3.1E-05 38.4 9.0 73 105-203 4-80 (100)
101 COG3851 UhpB Signal transducti 91.3 0.32 6.9E-06 52.3 5.3 45 106-153 410-457 (497)
102 COG4192 Signal transduction hi 90.8 0.44 9.6E-06 52.6 6.0 78 105-203 563-644 (673)
103 COG4564 Signal transduction hi 90.5 0.51 1.1E-05 50.1 6.0 63 88-153 330-406 (459)
104 KOG0019 Molecular chaperone (H 89.2 1.2 2.6E-05 50.7 8.0 161 110-287 61-239 (656)
105 COG0643 CheA Chemotaxis protei 88.7 0.44 9.6E-06 56.3 4.4 84 113-198 439-546 (716)
106 COG4251 Bacteriophytochrome (l 87.5 1.1 2.3E-05 51.5 6.1 100 105-221 635-742 (750)
107 cd00823 TopoIIB_Trans TopoIIB_ 87.0 4.4 9.5E-05 38.6 9.0 87 330-430 33-124 (151)
108 COG3275 LytS Putative regulato 83.7 1.8 3.9E-05 48.3 5.5 44 110-153 460-508 (557)
109 PF09239 Topo-VIb_trans: Topoi 82.5 9.7 0.00021 36.6 9.2 85 330-428 42-131 (160)
110 COG2972 Predicted signal trans 82.5 1.3 2.8E-05 49.7 4.0 48 106-153 350-402 (456)
111 PRK04017 hypothetical protein; 75.8 0.55 1.2E-05 43.8 -1.4 29 570-598 64-92 (132)
112 TIGR01052 top6b DNA topoisomer 75.4 23 0.0005 40.3 11.0 99 330-443 348-455 (488)
113 PRK14867 DNA topoisomerase VI 73.7 21 0.00046 41.9 10.5 99 330-443 498-613 (659)
114 PRK04184 DNA topoisomerase VI 72.2 31 0.00066 39.7 11.1 101 330-444 353-461 (535)
115 PRK14868 DNA topoisomerase VI 68.2 31 0.00068 41.1 10.2 104 330-444 542-655 (795)
116 PRK04031 DNA primase; Provisio 62.7 5.3 0.00011 43.9 2.5 24 570-593 209-232 (408)
117 COG1658 Small primase-like pro 60.3 1.8 3.8E-05 40.2 -1.4 28 568-595 52-79 (127)
118 cd01027 TOPRIM_RNase_M5_like T 60.0 0.82 1.8E-05 39.0 -3.4 27 571-597 45-71 (81)
119 PF10691 DUF2497: Protein of u 54.2 17 0.00037 30.5 3.6 32 426-457 35-67 (73)
120 PF13662 Toprim_4: Toprim doma 46.1 3.3 7.2E-05 34.8 -1.9 17 571-587 46-62 (81)
121 cd01028 TOPRIM_TopoIA TOPRIM_T 45.5 14 0.00031 34.5 2.1 26 571-596 91-116 (142)
122 COG2865 Predicted transcriptio 40.4 46 0.001 37.6 5.4 44 108-153 272-316 (467)
123 PHA02540 61 DNA primase; Provi 34.9 36 0.00078 36.9 3.4 50 549-611 238-288 (337)
124 KOG4518 Hydroxypyruvate isomer 34.1 47 0.001 33.3 3.7 38 96-133 69-106 (264)
125 PF14484 FISNA: Fish-specific 32.8 25 0.00054 29.4 1.4 14 498-511 30-43 (73)
126 cd03363 TOPRIM_TopoIA_TopoI TO 30.0 33 0.00072 31.4 1.9 24 572-595 74-97 (123)
127 cd03362 TOPRIM_TopoIA_TopoIII 27.6 52 0.0011 31.1 2.8 26 571-596 99-124 (151)
128 PF00640 PID: Phosphotyrosine 26.7 83 0.0018 28.6 3.9 58 97-155 4-78 (140)
129 TIGR00334 5S_RNA_mat_M5 ribonu 25.0 48 0.001 32.5 2.0 25 570-594 46-70 (174)
130 KOG3938 RGS-GAIP interacting p 22.7 82 0.0018 33.0 3.2 33 121-153 121-154 (334)
131 cd01026 TOPRIM_OLD TOPRIM_OLD: 22.6 44 0.00095 29.0 1.2 58 501-586 6-70 (97)
132 PF11169 DUF2956: Protein of u 20.1 1.4E+02 0.0031 26.6 3.8 24 414-443 18-41 (103)
No 1
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-182 Score=1476.17 Aligned_cols=535 Identities=56% Similarity=0.946 Sum_probs=511.9
Q ss_pred CCCCCcccceeccchhhHhhCCCeeeccCCC-ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCC
Q 007003 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPID 152 (622)
Q Consensus 74 ~~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~-~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~ 152 (622)
..+|++++||+|+|||||||||||||||++. +|||||||||||||+||++||+|+.|.|+|++||+|+|.|||||||++
T Consensus 3 ~~~Y~a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~sisV~DnGRGIPvd 82 (635)
T COG0187 3 TNNYDASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGSISVEDNGRGIPVD 82 (635)
T ss_pred cCcCCHhHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCCeEEEEECCCCCccc
Confidence 4679999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeec
Q 007003 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVL 232 (622)
Q Consensus 153 ~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~ 232 (622)
+||++++|++|+|||+|||||||+++ .|++|||+||||+|||||||++|+|+|+|+|+.|+|+|++|+++.+++.+.
T Consensus 83 iH~~~~~~~vEvI~T~LHAGGKFd~~--~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G~~~~~l~~ig- 159 (635)
T COG0187 83 IHPKEKVSAVEVIFTVLHAGGKFDND--SYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERGVPVTPLEVIG- 159 (635)
T ss_pred cCCCCCCCceEEEEEeeccCcccCCC--ccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeCCCcCCCceecc-
Confidence 99999999999999999999999997 999999999999999999999999999999999999999999998876441
Q ss_pred CCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHcc
Q 007003 233 PVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312 (622)
Q Consensus 233 ~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~ 312 (622)
....+++||+|+|+||+++|++ ..|+++.|.+|++++|+|||||+|.|+|++.... .. .|||++||++||++++.
T Consensus 160 -~~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~--~~-~~~y~~Gl~~yv~~l~~ 234 (635)
T COG0187 160 -STDTKKTGTKVRFKPDPEIFGE-TEFDYEILKRRLRELAFLNKGVKITLTDERTGEE--KK-EFHYEGGLKDYVEYLNK 234 (635)
T ss_pred -cCCCCCCccEEEEEcChHhcCC-cccCHHHHHHHHHHHhccCCCCEEEEEeccCCcc--cc-eeecccHHHHHHHHHhc
Confidence 1235678999999999999986 5799999999999999999999999999996522 12 59999999999999999
Q ss_pred CCCCCCc-eeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 007003 313 DKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 391 (622)
Q Consensus 313 ~~~~~~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l 391 (622)
+++++|+ ++++..+.+++.||||+||+ ++|+++++||||||+|++||||+.||++||+++||+|+++.++.|+++ +
T Consensus 235 ~k~~l~~~~~~~~~~~~~~~vEvA~q~~-d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~~k~~~--l 311 (635)
T COG0187 235 GKTPLHEEIFYFNGEKDGIAVEVALQWN-DGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNLLKEGD--L 311 (635)
T ss_pred CCCccccCceecccCccceEEEEEEEEe-cCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHHhCcCcccC--C
Confidence 9999995 66667778899999999999 899999999999999999999999999999999999999999988776 9
Q ss_pred CHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 392 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 471 (622)
Q Consensus 392 ~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~ 471 (622)
+++||||||++||||+||||+|+||||+||+|++++.+|++++.+.|..||++||.+++.|++|++.+++||++||+|||
T Consensus 312 ~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~aa~aR~aarkare 391 (635)
T COG0187 312 TGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAAAKAREAARKARE 391 (635)
T ss_pred CHHHHhhccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHH
Q 007003 472 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551 (622)
Q Consensus 472 ~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~l 551 (622)
++|+|+.++...|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||++|
T Consensus 392 ~~R~k~~~~~~~LpGKLadC~skd~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGKiLNVeka~~~kil~N~EI~~i 471 (635)
T COG0187 392 LTRRKSALDIPGLPGKLADCTSKDPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARLDKILKNEEIQTI 471 (635)
T ss_pred HHhhhcccccCCCCCcCcccccCCcccceEEEEecCCcchhhhhccCccceEEecccCcchhhhhccHhhhhhhHHHHHH
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 552 i~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
++|||||++ ++||+++||||||||||||||||+|||+|||||||||||+||++||||+|+||||||+.
T Consensus 472 i~AlG~g~~-~~fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~~ 539 (635)
T COG0187 472 ITALGTGIG-KDFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVKK 539 (635)
T ss_pred HHHhCCCCC-CCCChhhCccCcEEEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEEEcCceEEEEc
Confidence 999999995 45999999999999999999999999999999999999999999999999999999985
No 2
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=100.00 E-value=6.3e-170 Score=1434.58 Aligned_cols=542 Identities=48% Similarity=0.776 Sum_probs=506.8
Q ss_pred CCCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCC
Q 007003 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (622)
Q Consensus 74 ~~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~ 153 (622)
+.+|++++|++|+|+|||||||||||||++.+|||||||||||||+||+++|+|+.|+|+|++||+|+|+|||||||+++
T Consensus 97 ~~~Y~a~~I~vLeGLEaVRkRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~DgsItV~DnGRGIPvd~ 176 (903)
T PTZ00109 97 CSEYDADDIVVLEGLEAVRKRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDGSVEISDNGRGIPCDV 176 (903)
T ss_pred CCCCChHhCeehhccHHHhcCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCCeEEEEeCCccccccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHhhhhccCCCCCCCC--------------------------------------CCceeeecCcccccchh
Q 007003 154 HPATNKSALETVLTVLHAGGKFGGS--------------------------------------SSGYSVSGGLHGVGLSV 195 (622)
Q Consensus 154 h~~~g~~~~e~v~t~lhag~kf~~~--------------------------------------~~~y~~sgG~~GvGls~ 195 (622)
||++|+|++|+|||+|||||||+++ ++.|++|||+||||+||
T Consensus 177 h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SV 256 (903)
T PTZ00109 177 SEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSV 256 (903)
T ss_pred cccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceee
Confidence 9999999999999999999999874 14799999999999999
Q ss_pred hhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCCCCC-CCCCcEEEEEeC-ccccccccc-------------cC
Q 007003 196 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK-DRQGTRIRFWPD-KQVFTTAIQ-------------FD 260 (622)
Q Consensus 196 vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~~~~-~~~GT~V~F~PD-~~iF~~~~~-------------~d 260 (622)
|||||++|+|+|+|+|+.|+|+|++|+++.++... +.+ .++||+|+|||| +++|..+.. |+
T Consensus 257 VNALS~~l~VeV~RdGK~y~q~F~rG~~v~pLkvi----g~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~ 332 (903)
T PTZ00109 257 VNALSSFLKVDVFKGGKIYSIELSKGKVTKPLSVF----SCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFN 332 (903)
T ss_pred eeeccCeEEEEEEECCEEEEEEeCCCcccCCcccc----CCcCCCCceEEEEEeCcchhcCccccccccccccccccccC
Confidence 99999999999999999999999999998876543 333 579999999999 999965332 78
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeeCCCCCC--CCceeEEEeCCcHHHHHHHHccCCCCCC-c--eeEEEeeccceEEEEE
Q 007003 261 HNTIAGRIRELAFLNPKLTIALRKEDSDPE--KNQYNEYFFAGGLEEYVQWLNTDKKPLH-D--VVGFRKDVDGITIDLA 335 (622)
Q Consensus 261 ~~~i~~rl~elA~lnpgl~I~l~d~~~~~~--~~~~~~f~~~~Gl~dyv~~l~~~~~~~~-~--~i~~~~~~~~~~veva 335 (622)
++.|.+||+++|+|||||+|+|+|++.+.+ ....+.|+|+|||.+||++++.++++++ + ++++.++.+++.||||
T Consensus 333 ~d~L~~RLrElAfLNpGL~I~L~DeR~~~~~~~~~~e~f~~egGi~dfv~~ln~~k~~l~~~~~~I~~~g~~~~i~VEVA 412 (903)
T PTZ00109 333 LDLIKNRIHELSYLNPGLTFYLVDERIANENNFYPYETIKHEGGTREFLEELIKDKTPLYKDINIISIRGVIKNVNVEVS 412 (903)
T ss_pred HHHHHHHHHHHhccCCCcEEEEEecCccccCCcceEEEEEecCCHHHHHHHhcCCCCccCCCCceEEEEeeecCeEEEEE
Confidence 999999999999999999999999985321 1134679999999999999999888886 3 6778777778999999
Q ss_pred EEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCC
Q 007003 336 LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEG 415 (622)
Q Consensus 336 l~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~Feg 415 (622)
+||++++|+++++||||+|+|+ ||||++||++||+++||+|+++++++|+++.+++++||||||++||||+++||+|||
T Consensus 413 lq~s~~~y~e~i~SFVNnI~T~-GGTHv~Gfr~ALTr~In~y~kk~~llK~k~~~i~gedIREGLtavISvki~~PqFeG 491 (903)
T PTZ00109 413 LSWSLESYTALIKSFANNVSTT-AGTHIDGFKYAITRCVNGNIKKNGYFKGNFVNIPGEFIREGMTAIISVKLNGAEFDG 491 (903)
T ss_pred EEecCCCCceEEEEEECCccCC-CCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCCHHHHhhccEEEEEEeccCCcccC
Confidence 9998558889999999999999 999999999999999999999999888777899999999999999999999999999
Q ss_pred cccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccCCCCCCcCCCCCC
Q 007003 416 QTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL-RSSSLPGKLADCSST 494 (622)
Q Consensus 416 QTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~~r~k~~~-~~~~lpgKL~Dc~~~ 494 (622)
|||+||+|++++.+|+++|.++|..||++||++++.|++|++++++||++||+||+++|+|+.. ....|||||+||+++
T Consensus 492 QTK~KLgn~~vk~~ve~iv~e~L~~~l~~np~~a~~I~~Ka~~a~~AreaAk~arel~R~K~~~~~~~~lPgKL~DC~s~ 571 (903)
T PTZ00109 492 QTKTKLGNHLLKTILESIVFEQLSEILEFEPNLLLAIYNKSLAAKKAFEEAKAAKDLIRQKNNQYYSTILPGKLVDCISD 571 (903)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhhcccccCCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999998776 346799999999999
Q ss_pred CCCcceEEEEecCCCCCcccccCCCCceeecccCCeeccccccc-HHHHhhCHhHHHHHHHhCCCCCCC---CCCc----
Q 007003 495 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKD-EAAMYKNEEIQNLIRALGLGVKGE---DFKK---- 566 (622)
Q Consensus 495 ~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~-~~ki~~N~Ei~~li~alG~~~~~~---~~~~---- 566 (622)
|+++|||||||||||||||||||||+|||||||||||||||+++ .+||++|+||++||+|||||++.. +||+
T Consensus 572 d~~~~ELfIVEGDSAgGSAKqgRdR~~QAILPLRGKILNVeka~~~~kil~N~EI~~Li~alG~gig~~~~~~~dl~~~~ 651 (903)
T PTZ00109 572 DIERNELFIVEGESAAGNAKQARNREFQAVLPLKGKILNIEKIKNNKKVFENSEIKLLITSIGLSVNPVTWRQYDLSHGT 651 (903)
T ss_pred CCcccEEEEEcccCCCcccccccCccceeecccCCceehhcccccHHHHHhcHHHHHHHHHhCCCCCcccccccCccccc
Confidence 99999999999999999999999999999999999999999995 999999999999999999999542 6888
Q ss_pred ------------------------CCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 567 ------------------------EALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 567 ------------------------~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
++||||||||||||||||+|||+|||||||||||+||++||||+|+||||||+.
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~LRYgKIIIMTDADVDGsHIrtLLLTff~r~~p~Lie~G~vyia~pPLyki~~ 729 (903)
T PTZ00109 652 KASKDESVQNNNSTLTKKKNSLFDTPLRYGKIILLTDADVDGEHLRILLLTLLYRFCPSLYEHGRVYVACPPLYRITN 729 (903)
T ss_pred ccccccccccccccccccccccccccCCcCeEEEEeCCCCChhHHHHHHHHHHHHhCHHhhhCCEEEEecCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999985
No 3
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=100.00 E-value=8.7e-169 Score=1430.70 Aligned_cols=536 Identities=52% Similarity=0.891 Sum_probs=512.2
Q ss_pred CCCCCCcccceeccchhhHhhCCCeeeccCCC-ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccC
Q 007003 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPI 151 (622)
Q Consensus 73 ~~~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~-~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~ 151 (622)
.+.+|++++||+|+|+|||||||||||||++. +||||+||||||||+||+++|+|+.|+|+|++||+|+|+|||||||+
T Consensus 3 ~~~~Y~a~~i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dgsIsV~DnGrGIPv 82 (756)
T PRK14939 3 MSNSYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADGSVSVSDNGRGIPT 82 (756)
T ss_pred ccCCCCHHHCeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCCeEEEEEcCCcccC
Confidence 34569999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeee
Q 007003 152 DLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHV 231 (622)
Q Consensus 152 ~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~ 231 (622)
+.||++|+|++|++||++||||||+++ .|++|||+||||+++|||||++|+|+|+|+|+.|+|+|++|+++.++...
T Consensus 83 d~h~~~g~~~~Elvlt~lhAggKfd~~--~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~~~q~f~~G~~~~~l~~~- 159 (756)
T PRK14939 83 DIHPEEGVSAAEVIMTVLHAGGKFDQN--SYKVSGGLHGVGVSVVNALSEWLELTIRRDGKIHEQEFEHGVPVAPLKVV- 159 (756)
T ss_pred CcccccCCchhhheeeeecccCCCCCC--cccccCCccCccceEeehccCeEEEEEEeCCeEEEEEEecCccccCcccc-
Confidence 999999999999999999999999986 99999999999999999999999999999999999999999998766443
Q ss_pred cCCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHc
Q 007003 232 LPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311 (622)
Q Consensus 232 ~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~ 311 (622)
+.+.++||+|+|+||+++|+ ...|+++.|.+|++++|++||||+|+|+|++.+ ..+.|+|+||+.+|+++++
T Consensus 160 ---g~~~~~GT~V~F~PD~~iF~-~~~~~~~~i~~rl~elA~lnpgl~i~l~der~~----~~~~f~~egGi~~fv~~l~ 231 (756)
T PRK14939 160 ---GETDKTGTEVRFWPSPEIFE-NTEFDYDILAKRLRELAFLNSGVRIRLKDERDG----KEEEFHYEGGIKAFVEYLN 231 (756)
T ss_pred ---CCcCCCCcEEEEEECHHHcC-CcccCHHHHHHHHHHHhhcCCCCEEEEeccCCC----ceeEEEeCChHHHHHHHHh
Confidence 44467999999999999996 457999999999999999999999999999853 3568999999999999999
Q ss_pred cCCCCCC-ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007003 312 TDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 390 (622)
Q Consensus 312 ~~~~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~ 390 (622)
.++.+++ ++++|.++.+++.||||+||+ ++|+++++||||+|+|++||||++||++||+++||+|+++.++.|+++.+
T Consensus 232 ~~~~~~~~~~i~~~~~~~~~~veval~~~-~~~~e~~~SFvN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~K~~~~~ 310 (756)
T PRK14939 232 RNKTPLHPNIFYFSGEKDGIGVEVALQWN-DSYQENVLCFTNNIPQRDGGTHLAGFRAALTRTINNYIEKEGLAKKAKVS 310 (756)
T ss_pred cCCCcCCCCceEEEeeeCCeEEEEEEEEc-CCCceeEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCC
Confidence 8888887 678888888889999999999 78999999999999999999999999999999999999998888777789
Q ss_pred CCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 391 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRAR 470 (622)
Q Consensus 391 l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar 470 (622)
++++||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||..++.|+++++.+++||+||++||
T Consensus 311 l~~~diregl~~vvsvki~~P~FegQTK~kL~n~ev~~~v~~~v~e~l~~~l~~np~~a~~ii~k~~~aa~aR~aa~kar 390 (756)
T PRK14939 311 LTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLVNEKLSEFLEENPNEAKIIVGKIIDAARAREAARKAR 390 (756)
T ss_pred CCHhHHhhceEEEEEEecCCCcccCchhccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHH
Q 007003 471 DLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 550 (622)
Q Consensus 471 ~~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~ 550 (622)
++.|||+.++...|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||++
T Consensus 391 ~~~rrK~~~~~~~lpgKL~Dc~~~d~~~~eLfivEGDSAgGsAk~gRdr~~qailPLRGKiLNveka~~~kil~N~Ei~~ 470 (756)
T PRK14939 391 ELTRRKGALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARFDKMLSSQEIGT 470 (756)
T ss_pred HHhccccccccCCCCCCccccccCCCCceEEEEEeCCCCccccccccCccceeccccCCccchhccCCHHHHhcCHHHHH
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 551 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 551 li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
||+|||||++.++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||+.
T Consensus 471 li~alG~gig~~~fd~~~LRY~kIiIMTDADvDGsHIrtLLltff~r~~p~Lie~G~vyia~pPLykv~~ 540 (756)
T PRK14939 471 LITALGCGIGRDEFNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHLYIAQPPLYKVKK 540 (756)
T ss_pred HHHHhCCCCCcccCChhhCCcCeEEEEcCCCCCchHHHHHHHHHHHHhChhhccCCeEEEecCcEEEEec
Confidence 9999999995468999999999999999999999999999999999999999999999999999999974
No 4
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=100.00 E-value=2.1e-167 Score=1408.97 Aligned_cols=533 Identities=50% Similarity=0.828 Sum_probs=505.2
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCc
Q 007003 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (622)
Q Consensus 75 ~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h 154 (622)
.+|++++||+|+++||||+||||||||++.+||||+||||||||+||+++|+|+.|+|+|++||+|+|+|||||||++.|
T Consensus 3 ~~Y~~~~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dgsitV~DnGrGIPv~~h 82 (637)
T TIGR01058 3 SKYNADAIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDNSITVQDDGRGIPTGIH 82 (637)
T ss_pred CccCHHHCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCCeEEEEECCCcccCccc
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCC-cccccceeeecC
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLP 233 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G-~~~~~~~~~~~~ 233 (622)
++++++++|+|||+||||||||++ .|++|||+||||+|+|||||++|+|+|+|+|+.|.|+|++| .++.++...
T Consensus 83 ~~~~~~~~E~v~t~LhaGgkfd~~--~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~~~~~l~~~--- 157 (637)
T TIGR01058 83 QDGNISTVETVFTVLHAGGKFDQG--GYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGKIVQSLKKI--- 157 (637)
T ss_pred CcCCCccceeEEEEecccCcCCCC--cccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCcCcCCcccc---
Confidence 999999999999999999999987 99999999999999999999999999999999999999996 777765432
Q ss_pred CCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccC
Q 007003 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313 (622)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~ 313 (622)
+...++||+|+||||+++|++ ..|+++.|.+||+++|+|||||+|+|+|++.+ .++.|+|++||.+|+++++.+
T Consensus 158 -~~~~~~GT~V~F~PD~~iF~~-~~f~~d~l~~RlrelA~Ln~GL~I~l~der~~----~~~~f~~~~Gl~~yv~~l~~~ 231 (637)
T TIGR01058 158 -GTTKKTGTLVHFHPDPTIFKT-TQFNSNIIKERLKESAFLLKKLKLTFTDKRTN----KTTVFFYENGLVDFVDYINET 231 (637)
T ss_pred -cCCCCCceEEEEEeCHHHcCC-CccCHHHHHHHHHHHhccCCCcEEEEEecCCC----ceEEEEcCcCHHHHHHHhcCC
Confidence 445679999999999999974 47999999999999999999999999999853 245799999999999999988
Q ss_pred CCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCH
Q 007003 314 KKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393 (622)
Q Consensus 314 ~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~ 393 (622)
+++++++++|.++.+++.||||++|+ ++|+++++||||+|+|++|||||+||++||+++||+|+++.+++|+++.++++
T Consensus 232 k~~l~~~i~~~~~~~~~~vevAl~~~-~~~~e~~~SFvN~I~T~~GGTHv~g~~~aLtr~in~~~~~~~~lK~~~~~i~~ 310 (637)
T TIGR01058 232 KETLSQVTYFEGEKNGIEVEVAFQFN-DGDSENILSFANSVKTKEGGTHENGFKLAITDVINSYARKYNLLKEKDKNLEG 310 (637)
T ss_pred CCcCCccEEEEEEECCcEEEEEEEEc-CCCCeEEEEeECCccCCCCCcHHHHHHHHHHHHHHHHHHHhchhccccccCCh
Confidence 88777788888877789999999999 78889999999999999999999999999999999999998888877789999
Q ss_pred HhHhcccEEEEEEeecCC--CCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 394 EHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 471 (622)
Q Consensus 394 ~diregL~~vvsv~i~nP--~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~ 471 (622)
+||||||++||||++++| +|+||||++|+|++++.+|++++.+.|..||++||+.++.|+++++.++++|++||++|+
T Consensus 311 ~diregL~~vIsvki~~pnP~FegQTK~kL~n~~v~~~v~~~v~e~l~~~l~~np~~a~~Iiek~~~~a~aR~aa~~ar~ 390 (637)
T TIGR01058 311 SDIREGLSAIISVRIPEELIQFEGQTKSKLFSPEARNVVDEIVQDHLFFFLEENNNDAKLLIDKAIKARDAKEAAKKARE 390 (637)
T ss_pred hhHhhccEEEEEEecCCCcccccCcccccccChhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999755 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc--cccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHH
Q 007003 472 LVRQK--SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549 (622)
Q Consensus 472 ~~r~k--~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~ 549 (622)
+.|+| +......|||||+||+++++++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||+
T Consensus 391 ~~r~~~k~~~~~~~lpgKL~dc~~~~~~~~eLfivEGDSAggsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~ 470 (637)
T TIGR01058 391 EKKSGKKPKKEKGILSGKLTPAQSKNPAKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAKLADILKNEEIN 470 (637)
T ss_pred HHhhccccccccCCCCcccccccCCCCCccEEEEEecCccccccccccccceEEEeccCCcccccccCCHHHHhcchHHH
Confidence 99974 4566667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 550 ~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
+|++|||||+ +++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||+.
T Consensus 471 ~l~~alG~~~-g~~~~~~~LRY~kIiImTDADvDGsHIr~LLltff~r~~p~Li~~G~v~~~~~Pl~kv~~ 540 (637)
T TIGR01058 471 TIIFCIGTGI-GADFSIKDLKYDKIIIMTDADTDGAHIQVLLLTFFYRYMRPLIELGHVYIALPPLYKLSK 540 (637)
T ss_pred HHHHHhCCCc-CccCCccccccceEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEecCCEEEEEe
Confidence 9999999999 567999999999999999999999999999999999999999999999999999999975
No 5
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=100.00 E-value=4.5e-160 Score=1354.10 Aligned_cols=536 Identities=60% Similarity=0.984 Sum_probs=507.8
Q ss_pred CCCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCC
Q 007003 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (622)
Q Consensus 74 ~~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~ 153 (622)
+++|++++||+|+++||||+||||||||++.+||||+|+||||||+||+++|+|++|+|+|+.+|+|+|+|||||||++.
T Consensus 5 ~~~Y~~~~i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 84 (638)
T PRK05644 5 AQEYDASQIQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDGSITVTDNGRGIPVDI 84 (638)
T ss_pred cCCCCHHHCeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCCcEEEEEeCccccCCc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecC
Q 007003 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLP 233 (622)
Q Consensus 154 h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~ 233 (622)
|+++|++.+|++|+++||||||+++ .|++|+|+||+|+++|||||++|+|+|+++|+.|+|+|++|+++.++...
T Consensus 85 h~~~ki~~~e~i~~~lhag~kfd~~--~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~~~~~~~~~G~~~~~~~~~--- 159 (638)
T PRK05644 85 HPKTGKPAVEVVLTVLHAGGKFGGG--GYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYYQEYERGVPVTPLEVI--- 159 (638)
T ss_pred cCCCCCCchHHheeeecccCccCCC--cccccCCccccchhhhhheeceEEEEEEeCCcEEEEEEECCeEccCcccc---
Confidence 9999999999999999999999987 89999999999999999999999999999999999999999998665432
Q ss_pred CCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccC
Q 007003 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313 (622)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~ 313 (622)
+...++||+|+|+||+++|. +..++++.|.+|++++|++||||+|+|++++.+. ...+.|+|++||.+|+++++.+
T Consensus 160 -~~~~~~GT~I~F~Pd~~~F~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~--~~~~~f~~~~Gl~dyv~~l~~~ 235 (638)
T PRK05644 160 -GETDETGTTVTFKPDPEIFE-TTEFDYDTLATRLRELAFLNKGLKITLTDEREGE--EKEETFHYEGGIKEYVEYLNRN 235 (638)
T ss_pred -CCcCCCCcEEEEEECHHHcC-CcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCC--cceeEEEcCCCHHHHHHHHhcC
Confidence 33467999999999999995 4679999999999999999999999999997431 1356799999999999999988
Q ss_pred CCCCC-ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 007003 314 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392 (622)
Q Consensus 314 ~~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~ 392 (622)
+++++ +++++..+.++++||||++|+ ++|+++++||||+|+|++|||||+||+++|+++||+|+++++++|+++.+++
T Consensus 236 ~~~~~~~~i~~~~~~~~~~veval~~~-~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~~~~Kk~~~~i~ 314 (638)
T PRK05644 236 KEPLHEEPIYFEGEKDGIEVEVAMQYN-DGYSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNKLLKEKDDNLT 314 (638)
T ss_pred CCcCCCCCeEEEeeccCeEEEEEEEec-CCCceEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccCCCCC
Confidence 88886 578787776778999999999 6788899999999999999999999999999999999999888777678999
Q ss_pred HHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (622)
Q Consensus 393 ~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~ 472 (622)
++|||+||++||||+|+||+|+||||++|+|++++.+|++++.+.|..||++||+.++.|+++++.++++|++++++|+.
T Consensus 315 ~~dIregl~~vVsv~i~nP~F~gQTKekL~~~~v~~~v~~~v~~~l~~~l~~n~~~~~~I~~~~~~~a~~r~~a~~~k~~ 394 (638)
T PRK05644 315 GEDVREGLTAVISVKHPEPQFEGQTKTKLGNSEVRGIVDSVVSEALSEFLEENPNVAKKIVEKAILAARAREAARKAREL 394 (638)
T ss_pred hhHHhhceEEEEEEecCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHH
Q 007003 473 VRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552 (622)
Q Consensus 473 ~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li 552 (622)
.|+|+..+...|||||+||+++++++|||||||||||||||+|||||+|||||||||||||||+++.+|+++|+||++|+
T Consensus 395 ~r~k~~~~~~~lpgKL~dc~~~~~~~~eLflvEGDSA~gsak~grdr~~qailPLrGKiLNv~~a~~~ki~~N~Ei~~l~ 474 (638)
T PRK05644 395 TRRKSALESSSLPGKLADCSSKDPEESELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILKNEEIRALI 474 (638)
T ss_pred hhcccccccCCCCchhcccccCCCCccEEEEEecCCCccccccccCccceeecccCCceeccccCCHHHHHhCHHHHHHH
Confidence 99888887789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 553 ~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
+|||||+ +++||+++|||||||||||||+||+|||+|||||||||||+||++||||+|+||||||+.
T Consensus 475 ~alG~~~-~~~~~~~~LRY~kiiImtDaD~DG~HI~~Llltff~~~~p~Li~~G~l~~~~~Pl~kv~~ 541 (638)
T PRK05644 475 TALGTGI-GDDFDISKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMRPLIEAGYVYIAQPPLYKIKK 541 (638)
T ss_pred HHhCCCC-CCcCChhhCccCeEEEEeCCCCCchHHHHHHHHHHHHhCHHhccCCeEEEecCCEEEEEe
Confidence 9999999 577999999999999999999999999999999999999999999999999999999974
No 6
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=100.00 E-value=1.2e-159 Score=1350.66 Aligned_cols=530 Identities=49% Similarity=0.838 Sum_probs=501.3
Q ss_pred CCCCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCC
Q 007003 73 VSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPID 152 (622)
Q Consensus 73 ~~~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~ 152 (622)
.+++|++++||+|+++|||||||+|||||++.+||+|+|+||||||+||+++|+|+.|+|+|++||+|+|+|||||||++
T Consensus 4 ~~~~y~~~~i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg~I~V~DnGrGIP~~ 83 (631)
T PRK05559 4 MTNNYNADSIEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADGSVSVRDNGRGIPVG 83 (631)
T ss_pred ccCCCCHHHCeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCCcEEEEEcCCCCCcc
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeec
Q 007003 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVL 232 (622)
Q Consensus 153 ~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~ 232 (622)
.|+.+|+|++|++|+++||||||++. .|++|||+||+|+++|||||++|+|+|+++|+.|.|+|++|+++.++...
T Consensus 84 ~~~~~~~~~~E~v~t~lhagsKf~~~--~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~~G~~~~~l~~~-- 159 (631)
T PRK05559 84 IHPEEGKSGVEVILTKLHAGGKFSNK--AYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFEGGDPVGPLEVV-- 159 (631)
T ss_pred cccccCCcchheeeeeccccCccCCc--cccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEECCcCccCcccc--
Confidence 99999999999999999999999987 89999999999999999999999999999999999999999998765332
Q ss_pred CCCCC-CCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHc
Q 007003 233 PVDSK-DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLN 311 (622)
Q Consensus 233 ~~~~~-~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~ 311 (622)
. ..+ .++||+|+|+||+++|+ +..++++.|.+|++++|++|||++|+|++++ . ++.|+|++||.+|+.+++
T Consensus 160 ~-~~~~~~~GT~V~f~PD~~iF~-~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~-~-----~~~f~~~~gl~~~v~~~~ 231 (631)
T PRK05559 160 G-TAGKRKTGTRVRFWPDPKIFD-SPKFSPERLKERLRSKAFLLPGLTITLNDER-E-----RQTFHYENGLKDYLAELN 231 (631)
T ss_pred c-cccCCCCCcEEEEEECHHHcC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeCC-c-----eEEEECCccHHHHHHHHh
Confidence 1 222 67999999999999995 4579999999999999999999999999986 2 467999999999999999
Q ss_pred cCCCCCCc--eeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCC
Q 007003 312 TDKKPLHD--VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 389 (622)
Q Consensus 312 ~~~~~~~~--~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~ 389 (622)
.+++++++ ++++.++.+++.||||++|+ ++|+++++||||+|+|++|||||+||+++|+++||+|+++++++| ++.
T Consensus 232 ~~~~~i~~~~~i~~~~~~~~~~veval~~~-~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~l~k-~~~ 309 (631)
T PRK05559 232 EGKETLPEEFVGSFEGEAEGEAVEWALQWT-DEGGENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRNLLP-KGK 309 (631)
T ss_pred CCCCccCCCCceEEeeeeccceEEEEEEec-CCCCeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhCccc-ccc
Confidence 88788874 78888877789999999999 678889999999999999999999999999999999999998887 578
Q ss_pred CCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 390 SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRA 469 (622)
Q Consensus 390 ~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakka 469 (622)
+++++|||+||++||||+|+||+|+||||++|+|++++.+|++++.+.|..||++||++++.|+++++.++++|++ ++
T Consensus 310 ~l~~~diregl~~vvsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~ii~k~~~~a~ar~~--~~ 387 (631)
T PRK05559 310 KLEGEDVREGLAAVLSVKIPEPQFEGQTKEKLGSREARRFVSGVVKDAFDLWLNQNPELAEKLAEKAIKAAQARLR--AA 387 (631)
T ss_pred CCChhhHhhceEEEEEEEcCCCcccCcccccccCHhHhhhhhhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH--HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997 47
Q ss_pred HHHHhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHH
Q 007003 470 RDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 549 (622)
Q Consensus 470 r~~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~ 549 (622)
|++.|+|+..+ ..|||||+||+++++++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||+
T Consensus 388 ~~~~r~k~~~~-~~lpgKL~dc~~~~~~~~eL~lvEGDSAggsak~grdr~~qailPLRGKiLNv~~a~~~ki~~N~Ei~ 466 (631)
T PRK05559 388 KKVKRKKKTSG-PALPGKLADCTSQDPERTELFLVEGDSAGGSAKQARDREFQAILPLRGKILNTWEASLDDVLANEEIH 466 (631)
T ss_pred HHHhhhccccC-CCCCCcCcccccCCCCCCEEEEEeCCCCccccccccCccceeecccCCeecccccCCHHHHhcChhHH
Confidence 88888888777 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 550 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 550 ~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
+|++|||||+ +++||+++||||||||||||||||+|||||||||||||||+||++||||+|+||||||+.
T Consensus 467 ~l~~alG~~~-~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 536 (631)
T PRK05559 467 DIIVAIGIGP-GDSFDLEDLRYGKIIIMTDADVDGAHIATLLLTFFYRHFPPLVEAGHVYIALPPLYRVDK 536 (631)
T ss_pred HHHHHhCCCC-CCccCccccccCeEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEecCCEEEEEc
Confidence 9999999999 578999999999999999999999999999999999999999999999999999999974
No 7
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=100.00 E-value=1.6e-158 Score=1337.42 Aligned_cols=529 Identities=38% Similarity=0.645 Sum_probs=487.6
Q ss_pred CCCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCC
Q 007003 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (622)
Q Consensus 74 ~~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~ 153 (622)
+++|++++|++|+|+|||||||||||||+++ ||+||||||||+||+++|+|++|.|+|+.||+|+|+|||||||++.
T Consensus 1 ~~~y~~~~i~~L~gle~VRkRPgMYigs~~~---~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d~~I~V~DnGrGIp~~~ 77 (625)
T TIGR01055 1 TTNYSAKDIEVLDGLEPVRKRPGMYTDTTRP---NHLVQEVIDNSVDEALAGFASIIMVILHQDQSIEVFDNGRGMPVDI 77 (625)
T ss_pred CCccChhhceeecccHHhhcCCCCeeCCCCc---ceeehhhhhcccchhhcCCCCEEEEEEeCCCeEEEEecCCccCccc
Confidence 3569999999999999999999999999964 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecC
Q 007003 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLP 233 (622)
Q Consensus 154 h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~ 233 (622)
||++|+|++|++||++||||||++. .|++|+||||+|+++|||||++|+|+++++|+.|+|+|++|+++.+++.+ .
T Consensus 78 h~~~g~~~~e~v~t~lhagsK~~~~--~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~i--~ 153 (625)
T TIGR01055 78 HPKEGVSAVEVILTTLHAGGKFSNK--NYHFSGGLHGVGISVVNALSKRVKIKVYRQGKLYSIAFENGAKVTDLISA--G 153 (625)
T ss_pred ccccCCcHHHHhhhcccccCCCCCC--cceecCCCcchhHHHHHHhcCeEEEEEEECCeEEEEEEECCeEccccccc--c
Confidence 9999999999999999999999987 89999999999999999999999999999999999999999997665432 1
Q ss_pred CCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccC
Q 007003 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313 (622)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~ 313 (622)
......+||+|+|+||+++|.. ..++++.|.+|++++|++||||+|+|+|++.+ ..+.|+|++||++|+++++.+
T Consensus 154 ~~~~~~~GT~V~F~PD~~~F~~-~~~e~~~i~~~l~~lA~lnpgi~~~l~der~~----~~~~f~~~~Gi~~yv~~l~~~ 228 (625)
T TIGR01055 154 TCGKRLTGTSVHFTPDPEIFDS-LHFSVSRLYHILRAKAVLCRGVEIEFEDEVNN----TKALWNYPDGLKDYLSEAVNG 228 (625)
T ss_pred ccCCCCCCeEEEEEECHHHCCC-CccCHHHHHHHHHHHHhhCCCcEEEEeecCCC----ceeEEecCchHHHHHHHHhcC
Confidence 0113469999999999999974 57999999999999999999999999999853 235799999999999999887
Q ss_pred CCCCCcee-EEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 007003 314 KKPLHDVV-GFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392 (622)
Q Consensus 314 ~~~~~~~i-~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~ 392 (622)
++++++++ ....+.+++.++||++|+.+++++.++||||+|+|++|||||+||++||+++||+|++++++.|+ +.+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~ve~al~~~~~~~~~~~~SFvN~I~T~~GGTHv~gf~~alt~~in~~~~~~~~~kk-~~~i~ 307 (625)
T TIGR01055 229 DNTLPPKPFSGNFEGDDEAVEWALLWLPEGGELFMESYVNLIPTPQGGTHVNGLRQGLLDALREFCEMRNNLPR-GVKLT 307 (625)
T ss_pred CCCCCCCceEEEEeeCCceEEEEEEEecCCCCEEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHHhCcccc-cCCCC
Confidence 77776433 33333467889999999855577889999999999999999999999999999999998877654 57899
Q ss_pred HHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (622)
Q Consensus 393 ~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~ 472 (622)
++||||||++||||+++||+|+||||++|+|++++.+|++++.+.|..||++||..++.|+++++.++++|+ +++|++
T Consensus 308 ~~diregl~~vVsvki~~P~FegQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n~~~a~~i~~k~~~~a~ar~--~~a~~~ 385 (625)
T TIGR01055 308 AEDIWDRCSYVLSIKMQDPQFAGQTKERLSSRQVAKFVSGVIKDAFDLWLNQNVQLAEHLAEHAISSAQRRK--RAAKKV 385 (625)
T ss_pred HHHHhhccEEEEEEeccCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 778887
Q ss_pred HhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHH
Q 007003 473 VRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 552 (622)
Q Consensus 473 ~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li 552 (622)
.| |+.++...|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+++.+|+++|+||++|+
T Consensus 386 ~r-k~~~~~~~lpgKL~dc~~~~~~~~eLfivEGDSA~gsak~grdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li 464 (625)
T TIGR01055 386 VR-KKLTSGPALPGKLADCTRQDLEGTELFLVEGDSAGGSAKQARDREYQAILPLWGKILNTWEVSLDKVLNSQEIHDIE 464 (625)
T ss_pred hh-cccccCCCCCccccccccCCCCceEEEEEecCCCCccccccCCcceeEEeccCCceeecccCCHHHhhcCHHHHHHH
Confidence 66 44667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 553 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 553 ~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
+|||||++ ++ ++++||||||||||||||||+|||||||||||||||+||++||||+|+||||||+.
T Consensus 465 ~alG~g~~-~~-~~~~LRY~kiiImTDADvDG~HI~~LLltff~r~~p~Li~~G~vy~~~~Pl~kv~~ 530 (625)
T TIGR01055 465 VALGIDPD-SN-DLSQLRYGKICILADADSDGLHIATLLCALFFLHFPKLVEEGHVYVAKPPLYRIDL 530 (625)
T ss_pred HHhCCCcc-cc-cccccccceEEEEeCCCCCcchhHHHHHHHHHHhCHhhccCCeEEEEeCCEEEEec
Confidence 99999995 44 59999999999999999999999999999999999999999999999999999974
No 8
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=100.00 E-value=1.9e-157 Score=1341.06 Aligned_cols=533 Identities=56% Similarity=0.965 Sum_probs=507.9
Q ss_pred CCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcCC
Q 007003 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 156 (622)
Q Consensus 77 Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~~ 156 (622)
|++++||+|+++||||+||||||||++++||||+|+||||||+||+.+|+|+.|+|+|+++|+|+|+|||+|||++.|++
T Consensus 1 Y~~~~i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g~I~V~DnG~GIp~~~h~~ 80 (654)
T TIGR01059 1 YDASSIKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDGSVTVEDNGRGIPVDIHPE 80 (654)
T ss_pred CChHHCeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCCcEEEEEeCCCcCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCCCC
Q 007003 157 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS 236 (622)
Q Consensus 157 ~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~~~ 236 (622)
+|++.+|++|+.+||||||+++ .|++|+|+||+|++++||||++|+|+++++|+.|+|+|++|+++.++... +.
T Consensus 81 ~ki~~~e~i~~~l~ag~kf~~~--~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~~~~~~~~G~~~~~l~~~----~~ 154 (654)
T TIGR01059 81 EGISAVEVVLTVLHAGGKFDKD--SYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKIYRQEFERGIPLGPLEVV----GE 154 (654)
T ss_pred CCCCchHHheeeecccCccCCC--cceecCCccchhHHHHHHhcCeEEEEEEECCeEEEEEEeCCCcccCceec----cC
Confidence 9999999999999999999987 89999999999999999999999999999999999999999998765432 45
Q ss_pred CCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccCCCC
Q 007003 237 KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 316 (622)
Q Consensus 237 ~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~ 316 (622)
+.++||+|+|+||+++|. +..++++.|.+|++++|++||||+|+|++++.+. ...+.|+|++||++|+++++.++++
T Consensus 155 ~~~~GT~V~F~pdp~~F~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~--~~~~~f~~~~Gl~~yv~~l~~~~~~ 231 (654)
T TIGR01059 155 TKKTGTTVRFWPDPEIFE-TTEFDFDILAKRLRELAFLNSGVKISLEDERDGK--GKSVTFHYEGGIKSFVKYLNRNKEP 231 (654)
T ss_pred CCCCCcEEEEEEChHHhC-CcccCHHHHHHHHHHhhccCCCeEEEEEeecCCC--CceeEEEcCCcHHHHHHHHhcCCCc
Confidence 668999999999999998 5679999999999999999999999999998521 1356899999999999999888888
Q ss_pred CC-ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHh
Q 007003 317 LH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEH 395 (622)
Q Consensus 317 ~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~d 395 (622)
++ +++++.++.++++||||++|+ ++|+++++||||+|+|++|||||+||+++|+++||+|++++++.|+++.+++++|
T Consensus 232 l~~~~i~~~~~~~~~~veva~~~~-~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~l~K~~~~~i~~~d 310 (654)
T TIGR01059 232 LHEEIIYIKGEKEGIEVEVALQWN-DGYSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNKLLKESKPNLTGED 310 (654)
T ss_pred CCCCCeEEEecccCeEEEEEEEec-CCCceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCCCCHHH
Confidence 76 678888777789999999999 6788899999999999999999999999999999999999888887778999999
Q ss_pred HhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007003 396 VREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQ 475 (622)
Q Consensus 396 iregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~~r~ 475 (622)
||+||++||||+|+||+|+||||++|+|++++.+|.+++.+.|..||++||+.++.|+++++.++++|++++++|++.|+
T Consensus 311 iregl~~vvsv~i~~P~F~gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n~~~a~~iv~k~~~~a~~r~~a~~~k~~~r~ 390 (654)
T TIGR01059 311 IREGLTAVISVKVPDPQFEGQTKTKLGNSEVRSIVESLVYEKLTEFFEENPQEAKAIVEKAILAAQAREAARKARELTRR 390 (654)
T ss_pred HhhccEEEEEEecCCCcccCcccccccChhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHh
Q 007003 476 KSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 555 (622)
Q Consensus 476 k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~al 555 (622)
|+..+...|||||+||+++|+++|||||||||||||||||||||+|||||||||||||||+++.+|+++|+||++|++||
T Consensus 391 k~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSA~gsak~gRd~~~qai~PLrGKiLNv~~~~~~ki~~n~Ei~~l~~~l 470 (654)
T TIGR01059 391 KSALDSGGLPGKLADCSSKDPSKSELYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARLDKILSNQEIGAIITAL 470 (654)
T ss_pred ccccccCCCCcCccCcccCCCCCCEEEEEecCCCCcccccccccccccccccCCccchhccCCHHHHhhChHHHHHHHHh
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 556 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 556 G~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
|||+ +++||+++|||||||||||||+||+|||+|||||||||||+||++||||+|+||||||+.
T Consensus 471 G~~~-~~~~~~~~LrY~kiiImtDaD~DG~HI~~Lll~ff~~~~p~Li~~g~~~~~~~Pl~kv~~ 534 (654)
T TIGR01059 471 GCGI-GKDFDLEKLRYHKIIIMTDADVDGSHIRTLLLTFFYRYMRPLIENGYVYIAQPPLYKVKK 534 (654)
T ss_pred CCCc-cccccccccccceEEEEeCCCCCcchhHHHHHHHHHHhcHhhccCCeEEEecCCEEEEEe
Confidence 9999 578999999999999999999999999999999999999999999999999999999974
No 9
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=100.00 E-value=1.6e-149 Score=1256.50 Aligned_cols=489 Identities=31% Similarity=0.483 Sum_probs=446.3
Q ss_pred ccceeccchhhHhhCCCeeeccCCC-----------------ChhhHHHHHHHHhhHHhhhc---CCCCeEEEEEeCCCe
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGP-----------------RGLHHLVYEILDNAVDEAQA---GYASNIEVALLADNS 139 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~-----------------~gL~~lv~EildNaiDe~~~---g~~~~I~V~i~~dg~ 139 (622)
++||+|+++||||+||||||||++. +||||+||||||||+||+++ |+|+.|+|+|+ ||+
T Consensus 2 ~~i~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dgs 80 (602)
T PHA02569 2 DEFKVLSDREHILKRPGMYIGSVAYEAHERFLFGKFTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NNQ 80 (602)
T ss_pred CceeEccchHHHhcCCCceeCCCCcccccceeecccccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CCE
Confidence 6899999999999999999999998 99999999999999999999 99999999999 999
Q ss_pred EEEEECCCCccCCCcCC-CC--cchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEE
Q 007003 140 VSVADNGRGIPIDLHPA-TN--KSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQ 216 (622)
Q Consensus 140 IsV~DnGrGIP~~~h~~-~g--~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q 216 (622)
|+|+|||||||++.|++ +| +|.+|+|||+|||||||+ + .|++|||+||||+|||||||++|+|+++++++.|+|
T Consensus 81 isV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd-~--~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q 157 (602)
T PHA02569 81 VTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFD-D--TNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTV 157 (602)
T ss_pred EEEEECCCcccCCcccccccccccceEEEEEeeccccccC-C--cceeeCCcCCccceeeeccchhhheEEEcCCEEEEE
Confidence 99999999999999986 55 889999999999999994 4 799999999999999999999999999999999999
Q ss_pred EEeCCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccC---HHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCc
Q 007003 217 KYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFD---HNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQ 293 (622)
Q Consensus 217 ~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d---~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~ 293 (622)
+|++|++..++.. +.+.++||+|+|+||+++|++ ..|+ ++.|.+||+++|+|||||+|+|+|++.+
T Consensus 158 ~f~~G~~~~~~~~-----~~~~~~GT~V~F~PD~~iF~~-~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~der~~----- 226 (602)
T PHA02569 158 NCSNGAENISWST-----KPGKGKGTSVTFIPDFSHFEV-NGLDQQYLDIILDRLQTLAVVFPDIKFTFNGKKVS----- 226 (602)
T ss_pred EecCCcccCCccc-----CCCCCCccEEEEEECHHHhCC-CccCccHHHHHHHHHHHHhcCCCCCEEEEEecCCC-----
Confidence 9999998766431 445679999999999999975 3575 6899999999999999999999998731
Q ss_pred eeEEEeCCcHHHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHH
Q 007003 294 YNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 373 (622)
Q Consensus 294 ~~~f~~~~Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ 373 (622)
+|+++|+++++. +++++. .+ .|+||++|+.++| +++||||+|+|++|||||+||+++|+++
T Consensus 227 -------~g~~~yv~~~~~------~~i~~~--~~--~veva~~~~~~~~--~~~SFvN~I~T~~GGTHv~gf~~altr~ 287 (602)
T PHA02569 227 -------GKFKKYAKQFGD------DTIVQE--ND--NVSIALAPSPDGF--RQLSFVNGLHTKNGGHHVDCVMDDICEE 287 (602)
T ss_pred -------CCHHHHHHHhCC------CCeEEe--cC--cEEEEEEecCCCc--EEEEEECcccCCCCCCHHHHHHHHHHHH
Confidence 689999999953 244443 23 5889999985566 4799999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEe-ecCCCCCCcccccccCc--ccccchhhhhhHHHHHHHhhCHHHHH
Q 007003 374 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR-VPNPEFEGQTKTRLGNP--EVRKVVDQSVQEYLTEYLELHPDVLD 450 (622)
Q Consensus 374 ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~-i~nP~FegQTK~kL~n~--ev~~~v~~~v~~~l~~~l~~np~~~~ 450 (622)
||+|+++. ++.+++++||||||++||+|+ ++||+|+||||++|+|+ +++..| +++.+.|..||++||++++
T Consensus 288 in~~~~kk-----~~~~l~~~diregL~avVsvk~i~~P~FegQTK~kL~~~~~~~~~~v-~~~~~~l~~~l~~n~~~~~ 361 (602)
T PHA02569 288 LIPMIKKK-----HKIEVTKARVKECLTIVLFVRNMSNPRFDSQTKERLTSPFGEIRNHI-DLDYKKIAKQILKTEAIIM 361 (602)
T ss_pred HHHHHHhc-----ccCCCCHHHHHhCCEEEEEEeccCCCcccCcccccccCChHHhccce-eehHHHHHHHHHHCHHHHH
Confidence 99999762 235799999999999999998 99999999999999999 799999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhcccc-ccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecc
Q 007003 451 SILSKSLSALKAALAAKRAR---DLVRQKSVL-RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILP 526 (622)
Q Consensus 451 ~I~~k~~~~~ka~~aakkar---~~~r~k~~~-~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailP 526 (622)
.|+++++.+++||++++++| ++.|+|... ..+.|||| |++|||||||||||||||||||||+||||||
T Consensus 362 ~i~~~a~~~~~ar~a~~~~k~~k~~~r~k~~~~~~a~lpGk--------~~~~eL~ivEGDSAggsAk~~RdR~~qaIlP 433 (602)
T PHA02569 362 PIIEAALARKLAAEKAAETKAAKKAKKAKVAKHIKANLIGK--------DAETTLFLTEGDSAIGYLIEVRDEELHGGYP 433 (602)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCC--------CCCceEEEEecCCCCcccccccCccceeecc
Confidence 99999999999999886433 666666544 46789998 7899999999999999999999999999999
Q ss_pred cCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCC-CchHHHHHHHHHhhcHhhhhc
Q 007003 527 LRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG-AHIRTLLLTFFYRYQKTLFDE 605 (622)
Q Consensus 527 LrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDG-sHI~~Llltff~~~~p~Li~~ 605 (622)
|||||||||+++.+|+++|+||++|++|||||+ +++|+ +|||||||||||||||| ||||||||||||| ||+||++
T Consensus 434 LRGKiLNV~ka~~~ki~~N~Ei~~li~alG~g~-g~~~~--~LRY~kIiImTDADvDG~sHIr~LLltff~~-~p~Li~~ 509 (602)
T PHA02569 434 LRGKVLNTWGMSYADILKNKELFDICAITGLVL-GEKAE--NMNYKNIAIMTDADVDGKGSIYPLLLAFFSR-WPELFEQ 509 (602)
T ss_pred cCCcccchhhCCHHHhhcchhHHHHHHHhCCCc-Ccccc--ccccCcEEEEecCCCcchHHHHHHHHHHHHh-chhhccC
Confidence 999999999999999999999999999999999 45664 99999999999999999 9999999999999 9999999
Q ss_pred CcEEEEcCcEEEEEe
Q 007003 606 GCIYVGVPPLYKVCF 620 (622)
Q Consensus 606 G~v~~~~~Pl~kv~~ 620 (622)
||||+|+||||||+.
T Consensus 510 G~v~~~~~Pl~kv~~ 524 (602)
T PHA02569 510 GRIRFVKTPVIIAQV 524 (602)
T ss_pred CeEEEecCCEEEEEc
Confidence 999999999999975
No 10
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=100.00 E-value=1.5e-147 Score=1246.63 Aligned_cols=500 Identities=53% Similarity=0.863 Sum_probs=472.9
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeee
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVS 185 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~s 185 (622)
||||+|+||||||+||+++|+|+.|+|+|+++|+|+|+|||||||++.|++++++.+|++|+++||||||+++ .|++|
T Consensus 1 GL~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~--~~k~s 78 (594)
T smart00433 1 GLHHLVDEIVDNAADEALAGYMDTIKVTIDKDNSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDD--AYKVS 78 (594)
T ss_pred CceEEEeeehhcccchhccCCCCEEEEEEeCCCeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCC--Ccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred cCcccccchhhhhccCceEEEEEeCCEEEEEEEeC-CcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHH
Q 007003 186 GGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSR-GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTI 264 (622)
Q Consensus 186 gG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~-G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i 264 (622)
+|+||+|+++|||||++|+|+|+++|+.|+|+|++ |.++.++... +.+.++||+|+|+||+++|.....++++.|
T Consensus 79 ~G~~G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~~G~~~~~~~~~----~~~~~~GT~V~F~Pd~~~F~~~~~~~~~~i 154 (594)
T smart00433 79 GGLHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSEPKII----GDTKKDGTKVTFKPDLEIFGMTTDDDFELL 154 (594)
T ss_pred CCcccchHHHHHHhcCceEEEEEeCCcEEEEEEeCCCeECccceec----CCCCCCCcEEEEEECHHHhCCcccchHHHH
Confidence 99999999999999999999999999999999987 8887655332 345679999999999999986547899999
Q ss_pred HHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccCCCCCC-ceeEEEeeccceEEEEEEEecCCCC
Q 007003 265 AGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAY 343 (622)
Q Consensus 265 ~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~-~~i~~~~~~~~~~veval~~s~~~~ 343 (622)
.+|++++|++||||+|+|+|++.+ .+++|+|++||.+|+++++.++++++ +++++..+.+++.||||++|+ ++|
T Consensus 155 ~~rl~~~A~l~pgl~i~l~der~~----~~~~f~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~~~~~veval~~~-~~~ 229 (594)
T smart00433 155 KRRLRELAFLNKGVKITLNDERSD----EEETFLFEGGIKDYVELLNKNKELLSPEPTYIEGEKDNIRVEVAFQYT-DGY 229 (594)
T ss_pred HHHHHHHHhcCCCcEEEEeccCCC----cceEEECCCCHHHHHHHHhCCCCcccCCCeEEEEEeCCcEEEEEEEcc-CCC
Confidence 999999999999999999999843 24679999999999999998887776 677777777789999999999 678
Q ss_pred CceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccC
Q 007003 344 SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN 423 (622)
Q Consensus 344 ~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n 423 (622)
+++++||||+|+|++|||||+||+++|+++||+|++++++.|+ .+++++|||+||++||||+++||+||||||++|+|
T Consensus 230 ~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~--~~i~~~diregl~~vIsvki~~P~FegQTK~kL~n 307 (594)
T smart00433 230 SENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKE--KNIKGEDVREGLTAFISVKIPEPQFEGQTKEKLGT 307 (594)
T ss_pred CcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCcccc--CCCChhhHhhCeEEEEEEEEchheecccccccccC
Confidence 8999999999999999999999999999999999999887764 78999999999999999999999999999999999
Q ss_pred cccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCCCCCCCCcceEEE
Q 007003 424 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFI 503 (622)
Q Consensus 424 ~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~l 503 (622)
++++.+|++++.+.|..||++||..++.|+++++.++++|++|+++|++.|+| ..+...|||||+||+++++++|||||
T Consensus 308 ~~~~~~v~~~v~~~l~~~l~~n~~~a~~ii~k~~~~a~ar~~a~~~~~~~r~k-~~~~~~l~~KL~dc~~~~~~~~eL~i 386 (594)
T smart00433 308 SEVRFGVEKIVSECLLSFLEENPVEASKIVEKVLLAAKARAAAKKARELTRKK-KLSKISLPGKLADASSAGPKKCELFL 386 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-ccccccccccccccccCCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999988 66778899999999999999999999
Q ss_pred EecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCC
Q 007003 504 VEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVD 583 (622)
Q Consensus 504 vEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvD 583 (622)
||||||||||||||||+|||||||||||||||+++.+|+++|+||++|++|||||+ +++||+++|||||||||||||||
T Consensus 387 vEGDSA~gsak~grdr~~qailPLrGKiLNv~~~~~~ki~~N~Ei~~li~alG~~~-~~~~~~~~LRY~kIiImtDaDvD 465 (594)
T smart00433 387 VEGDSAGGSAKSGRDRDFQAILPLRGKLLNVEKASLDKILKNEEIQALITALGLGI-GKDFDIEKLRYGKIIIMTDADVD 465 (594)
T ss_pred EecCCCccccccccCccceeecccCCeecchhhccHHHHhhCHHHHHHHHHhCCCc-CcccCccccccceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 56799999999999999999999
Q ss_pred CCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 584 GAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 584 GsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
|+|||||||||||||||+||++||||+|+||||||+.
T Consensus 466 G~HI~~Llltff~r~~p~Li~~G~vy~~~~Pl~ki~~ 502 (594)
T smart00433 466 GSHIKGLLLTFFYRYMPPLIEAGFVYIAIPPLYKVTK 502 (594)
T ss_pred cchhHHHHHHHHHHhChhhhhCCeEEEecCCEEEEEe
Confidence 9999999999999999999999999999999999975
No 11
>PLN03128 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=1.3e-145 Score=1281.31 Aligned_cols=510 Identities=26% Similarity=0.399 Sum_probs=459.6
Q ss_pred cccceeccchhhHhhCCCeeeccCCC---------------------ChhhHHHHHHHHhhHHhhh-cCCCCeEEEEEeC
Q 007003 79 SEQIQVLEGLEAVRKRPAMYIGSTGP---------------------RGLHHLVYEILDNAVDEAQ-AGYASNIEVALLA 136 (622)
Q Consensus 79 ~~~i~~L~~~E~Vr~RP~mYiGs~~~---------------------~gL~~lv~EildNaiDe~~-~g~~~~I~V~i~~ 136 (622)
++.||+|+++||||+||||||||++. +||||+|+||||||+||++ +|+|+.|+|+|+.
T Consensus 4 ~~~yqk~s~lEhV~~RP~mYIGS~~~~~~~~wv~~~~~~~~~~v~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~ 83 (1135)
T PLN03128 4 EETYQKKTQLEHILLRPDTYIGSTEKHTQTLWVYEGGEMVNREVTYVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDV 83 (1135)
T ss_pred HHhhhhhcchhHHhcCCCCeeCCCCCccceeeEecccceeeeccccchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc
Confidence 46799999999999999999999998 7999999999999999996 5999999999997
Q ss_pred -CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEE--eCCEE
Q 007003 137 -DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGME 213 (622)
Q Consensus 137 -dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~--r~g~~ 213 (622)
||+|+|+|||||||++.|+++|+|+||+|||+||||||||++ .|++|||+||||+|||||||++|+|+|+ |+|+.
T Consensus 84 ~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~--~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~ 161 (1135)
T PLN03128 84 EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDN--EKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKK 161 (1135)
T ss_pred CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCc--cceeeccccCCCCeEEEeecCeEEEEEEECCCCeE
Confidence 799999999999999999999999999999999999999987 8999999999999999999999999999 89999
Q ss_pred EEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHH---HHHHHHHHHh-hhCCCcEEEEeeCCCCC
Q 007003 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN---TIAGRIRELA-FLNPKLTIALRKEDSDP 289 (622)
Q Consensus 214 y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~---~i~~rl~elA-~lnpgl~I~l~d~~~~~ 289 (622)
|+|+|++|+++.+++.+ .......+||+|+|+||+++|++ ..|+++ .+.+|++++| ++||||+|+|+|++..
T Consensus 162 y~q~f~~G~~~~~~p~i--~~~~~~~~GT~ItF~PD~~iF~~-~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder~~- 237 (1135)
T PLN03128 162 YKQVFTNNMSVKSEPKI--TSCKASENWTKITFKPDLAKFNM-TRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKKLP- 237 (1135)
T ss_pred EEEEeCCCcccCCCcee--ccCCCCCCceEEEEEECHHHcCC-CccChHHHHHHHHHHHHHHHhCCCCcEEEEecCCCC-
Confidence 99999999998765433 11223469999999999999985 468876 5899999999 9999999999998742
Q ss_pred CCCceeEEEeCCcHHHHHHHHc-cCCCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHH
Q 007003 290 EKNQYNEYFFAGGLEEYVQWLN-TDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368 (622)
Q Consensus 290 ~~~~~~~f~~~~Gl~dyv~~l~-~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~ 368 (622)
.+||++||+++. .++++...++.+..+ +..||||++|++ + +++++||||+|+|++|||||+||++
T Consensus 238 ----------~~G~~dyv~~~~~~~~~~~~~~i~~~~~--~~~~eva~~~s~-~-~~~~~SFVN~I~T~~GGTHv~g~~~ 303 (1135)
T PLN03128 238 ----------VKSFQDYVGLYLGPNSREDPLPRIYEKV--NDRWEVCVSLSD-G-SFQQVSFVNSIATIKGGTHVDYVAD 303 (1135)
T ss_pred ----------CCCHHHHHHHHhcCCCCCCCCCeEEEec--CceEEEEEEEcC-C-CceEEEEECcEecCCCCchHHHHHH
Confidence 369999999654 443333345666554 446999999994 4 5679999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHH
Q 007003 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDV 448 (622)
Q Consensus 369 al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ 448 (622)
+|++.+++++++++ | ++.+++++|||+||++||||+|+||+|+||||++|+|++++..|++.+.+.|..|++
T Consensus 304 ~i~~~i~~~~~kk~--K-~~~~l~~~diregL~~vIs~ki~nP~FesQTKekL~s~~~~~~v~~~v~e~~~~~l~----- 375 (1135)
T PLN03128 304 QIVKHIQEKVKKKN--K-NATHVKPFQIKNHLWVFVNCLIENPTFDSQTKETLTTRPSSFGSKCELSEEFLKKVE----- 375 (1135)
T ss_pred HHHHHHHHHHHHcc--C-CCCCCCHHHHHhCcEEEEEEecCCCcccCcccccccChhHHHHHHHHHHHHHHHHHh-----
Confidence 99999999987754 2 245799999999999999999999999999999999999999999999999999995
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCCC---CCCCCcceEEEEecCCCCCccccc---CCCCce
Q 007003 449 LDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQG---RDRRFQ 522 (622)
Q Consensus 449 ~~~I~~k~~~~~ka~~aakkar~~~r~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gsak~g---Rdr~~q 522 (622)
...|+++++.++++|++++++|+..++|+.. ..+ +||+||+ ++++++|||||||||||||||||| |||+||
T Consensus 376 ~~~Ivekil~~a~aR~aa~~~k~~~~kk~~~--~~i-pKL~Dc~~ag~k~~~~ceLflvEGDSAggsAk~Gl~~rdR~~q 452 (1135)
T PLN03128 376 KCGVVENILSWAQFKQQKELKKKDGAKRQRL--TGI-PKLDDANDAGGKKSKDCTLILTEGDSAKALAMSGLSVVGRDHY 452 (1135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCC-cccccccccCCCChhHcEEEEEecCCCCcchhhcccccCccce
Confidence 3478888888999999998888877776432 234 4999997 899999999999999999999999 999999
Q ss_pred eecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCC---CcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhc
Q 007003 523 AILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDF---KKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 599 (622)
Q Consensus 523 ailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~---~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~ 599 (622)
|||||||||||||+++.+||++|+||++|++||||+++ ++| |+++|||||||||||||||||||||||||||||||
T Consensus 453 aIlPLRGKiLNV~ka~~~ki~~N~EI~~li~alG~~~g-~~~~~~d~~~LRYgkIiIMTDaDvDGsHIr~LLltff~~~~ 531 (1135)
T PLN03128 453 GVFPLRGKLLNVREASHKQIMKNAEITNIKQILGLQFG-KTYDEENTKSLRYGHLMIMTDQDHDGSHIKGLIINFFHSFW 531 (1135)
T ss_pred eeeccCCceeccccCCHHHHhcchHHHHHHHHhCCCcC-ccccccChhhcccCeEEEEeCCCCCcchhHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999995 556 99999999999999999999999999999999999
Q ss_pred Hhhhhc-CcEEEEcCcEEEEEe
Q 007003 600 KTLFDE-GCIYVGVPPLYKVCF 620 (622)
Q Consensus 600 p~Li~~-G~v~~~~~Pl~kv~~ 620 (622)
|+||+. ||||+|+||||||+.
T Consensus 532 p~Li~~~G~l~~~~tPl~kv~~ 553 (1135)
T PLN03128 532 PSLLKIPGFLVEFITPIVKATK 553 (1135)
T ss_pred HHhhccCCeEEEccCCEEEEEc
Confidence 999996 999999999999974
No 12
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=100.00 E-value=2.2e-145 Score=1286.99 Aligned_cols=510 Identities=26% Similarity=0.398 Sum_probs=460.7
Q ss_pred cccceeccchhhHhhCCCeeeccCCC-----------------------ChhhHHHHHHHHhhHHhhh----cCCCCeEE
Q 007003 79 SEQIQVLEGLEAVRKRPAMYIGSTGP-----------------------RGLHHLVYEILDNAVDEAQ----AGYASNIE 131 (622)
Q Consensus 79 ~~~i~~L~~~E~Vr~RP~mYiGs~~~-----------------------~gL~~lv~EildNaiDe~~----~g~~~~I~ 131 (622)
++.||+|+++||||+||||||||++. +|||||||||||||+||++ +|+|+.|+
T Consensus 7 ~~~yq~L~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~ 86 (1388)
T PTZ00108 7 EERYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIK 86 (1388)
T ss_pred HHhhhcccchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEE
Confidence 56799999999999999999999987 7999999999999999999 58999999
Q ss_pred EEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeC
Q 007003 132 VALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRD 210 (622)
Q Consensus 132 V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~ 210 (622)
|+|+.| |+|+|+|||||||++.|+++|+|+||+|||+||||||||++ .|++|||+||||++||||||++|+|+|+|+
T Consensus 87 V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~--~yKvSGGlhGVGasvvNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 87 VTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDT--EKRVTGGRNGFGAKLTNIFSTKFTVECVDS 164 (1388)
T ss_pred EEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCC--ceeeecccccCCccccccccceEEEEEEEC
Confidence 999987 99999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred --CEEEEEEEeCCcccccceeeecCCCCCC-CCCcEEEEEeCccccccccccCHHH---HHHHHHHHhhhCCCcEEEEee
Q 007003 211 --GMEYHQKYSRGKPVTTLTCHVLPVDSKD-RQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRK 284 (622)
Q Consensus 211 --g~~y~q~f~~G~~~~~~~~~~~~~~~~~-~~GT~V~F~PD~~iF~~~~~~d~~~---i~~rl~elA~lnpgl~I~l~d 284 (622)
|+.|.|+|++||.+...+.+ . .... ++||+|+|+||+++|++ ..|++++ |.+|++++|++||||+|+|+|
T Consensus 165 ~~gk~y~q~f~~Gm~~~~~p~i--~-~~~~~~~GT~VtF~PD~~iF~~-~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnd 240 (1388)
T PTZ00108 165 KSGKKFKMTWTDNMSKKSEPRI--T-SYDGKKDYTKVTFYPDYAKFGM-TEFDDDMLRLLKKRVYDLAGCFGKLKVYLNG 240 (1388)
T ss_pred CCCCEEEEEecCCCcCCCCCcc--C-CCCCCCCceEEEEEeCHHHcCC-CccChHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 99999999999743222222 1 1123 79999999999999975 4699988 999999999999999999999
Q ss_pred CCCCCCCCceeEEEeCCcHHHHHHHH---ccCCCCCCceeE-EEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCc
Q 007003 285 EDSDPEKNQYNEYFFAGGLEEYVQWL---NTDKKPLHDVVG-FRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 360 (622)
Q Consensus 285 ~~~~~~~~~~~~f~~~~Gl~dyv~~l---~~~~~~~~~~i~-~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GG 360 (622)
++. |+++|++++ +.+..+.+++++ +.++.++..||||++|+ + ++++++||||+|+|++||
T Consensus 241 er~--------------gi~~F~~y~~ly~~~~~~~~~~~~~~~~~~~~~~~eVal~~s-~-~~~~~~SFVN~I~T~~GG 304 (1388)
T PTZ00108 241 ERI--------------AIKSFKDYVDLYLPDGEEGKKPPYPFVYTSVNGRWEVVVSLS-D-GQFQQVSFVNSICTTKGG 304 (1388)
T ss_pred ccc--------------cHHHHHHHHHhhccCCccCCCCceeeeccccCceEEEEEEEe-C-CCceEEEEEcccccCCCC
Confidence 863 455555544 555555544544 56666678999999999 4 578899999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHH
Q 007003 361 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTE 440 (622)
Q Consensus 361 THv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~ 440 (622)
|||+||+++|+++|++|++++ |+++.+++++|||+||++||+|+|+||+|+||||++|+|++++..+...+.+.|..
T Consensus 305 THv~g~~~alt~~i~~~~k~k---kk~~~~i~~~dIregl~~~Vs~~i~nP~FdsQTKekL~~~~~~~~~~~~v~e~l~~ 381 (1388)
T PTZ00108 305 THVNYILDQLISKLQEKAKKK---KKKGKEIKPNQIKNHLWVFVNCLIVNPSFDSQTKETLTTKPSKFGSTCELSEKLIK 381 (1388)
T ss_pred CHHHHHHHHHHHHHHHHHHHh---cccCCCCCHHHHHhCcEEEEEEecCCCccCCcccccccChhhHHHHHHHHHHHHHH
Confidence 999999999999999999873 33457899999999999999999999999999999999999999999999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCCC---CCCCCcceEEEEecCCCCCccccc-
Q 007003 441 YLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQG- 516 (622)
Q Consensus 441 ~l~~np~~~~~I~~k~~~~~ka~~aakkar~~~r~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gsak~g- 516 (622)
||++ ..|+++++.++++|++++++|++.++| ......+ +||+||+ ++++++|||||||||||||||+||
T Consensus 382 ~l~~-----~~Ivekil~~a~aR~aa~~ak~~~~~K-~~~~~~i-pKL~Dc~~aG~k~~~~ceL~lvEGDSAggsAk~Gl 454 (1388)
T PTZ00108 382 YVLK-----SPILENIVEWAQAKLAAELNKKMKAGK-KSRILGI-PKLDDANDAGGKNSEECTLILTEGDSAKALALAGL 454 (1388)
T ss_pred HHhh-----hHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcccCc-hhhhhcccccCCChhhcEEEEEecCcccchhhhcc
Confidence 9987 358999999999999999999988877 3333344 4999998 689999999999999999999999
Q ss_pred --CCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHH
Q 007003 517 --RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTF 594 (622)
Q Consensus 517 --Rdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltf 594 (622)
|||+|||||||||||||||+++.+||++|+||++|++|||||++.++||+++||||||||||||||||+|||||||||
T Consensus 455 ~vrdR~~qaVfPLRGKiLNV~kas~~ki~~N~EI~~li~aLGlg~g~~y~d~~~LRYgkIiIMTDADvDGsHIr~LLlnf 534 (1388)
T PTZ00108 455 SVVGRDYYGVFPLRGKLLNVRDASLKQLMNNKEIQNLFKILGLDIGKKYEDPKGLRYGSLMIMTDQDHDGSHIKGLLINM 534 (1388)
T ss_pred cccCccceeeeccCCcccccccccHhhhhccHHHHHHHHHhCCCcCccccccccCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 799999999999999999999999999999999999999999965568999999999999999999999999999999
Q ss_pred HHhhcHhhhh-cCcEEEEcCcEEEEEe
Q 007003 595 FYRYQKTLFD-EGCIYVGVPPLYKVCF 620 (622)
Q Consensus 595 f~~~~p~Li~-~G~v~~~~~Pl~kv~~ 620 (622)
||+|||+||+ +||||+|+||||||+.
T Consensus 535 f~~~~p~Li~~~Gfl~~~~tPl~kv~k 561 (1388)
T PTZ00108 535 IHHFWPSLLKNPGFLKEFITPIVKATK 561 (1388)
T ss_pred HHHhhHHhcccCCEEEEecCCEEEEEE
Confidence 9999999999 9999999999999975
No 13
>PLN03237 DNA topoisomerase 2; Provisional
Probab=100.00 E-value=3.1e-143 Score=1262.31 Aligned_cols=503 Identities=25% Similarity=0.412 Sum_probs=440.4
Q ss_pred CcccceeccchhhHhhCCCeeeccCC---------------------CChhhHHHHHHHHhhHHhhh-cCCCCeEEEEEe
Q 007003 78 GSEQIQVLEGLEAVRKRPAMYIGSTG---------------------PRGLHHLVYEILDNAVDEAQ-AGYASNIEVALL 135 (622)
Q Consensus 78 ~~~~i~~L~~~E~Vr~RP~mYiGs~~---------------------~~gL~~lv~EildNaiDe~~-~g~~~~I~V~i~ 135 (622)
-++.||+|+++||||+||||||||++ .+||||||||||+||+||++ +|+|+.|+|+|+
T Consensus 28 ~~~~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~ 107 (1465)
T PLN03237 28 IEEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVID 107 (1465)
T ss_pred HHHhhhccccchHHhcCCCCEeCCCCcccceeeeeccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEE
Confidence 46689999999999999999999999 59999999999999999995 599999999999
Q ss_pred -CCCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEE--eCCE
Q 007003 136 -ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGM 212 (622)
Q Consensus 136 -~dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~--r~g~ 212 (622)
++|+|+|+|||||||+++|+++|+|+||+|||+||||||||++ .|++|||+||||+|||||||++|+|+|+ ++|+
T Consensus 108 ~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~--~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk 185 (1465)
T PLN03237 108 VEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDN--EKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQK 185 (1465)
T ss_pred cCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCC--cceeeccccccCccccccccCeeEEEEEECCCCe
Confidence 6799999999999999999999999999999999999999987 9999999999999999999999999999 5589
Q ss_pred EEEEEEeC--CcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHH---HHHHHHHh-hhCCCcEEEEeeCC
Q 007003 213 EYHQKYSR--GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTI---AGRIRELA-FLNPKLTIALRKED 286 (622)
Q Consensus 213 ~y~q~f~~--G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i---~~rl~elA-~lnpgl~I~l~d~~ 286 (622)
.|+|+|++ |.+..+. + .......+||+|+|+||+++|++ ..|+++++ .+|++++| ++||||+|+|+|++
T Consensus 186 ~y~Q~f~~nmG~~~~p~--i--~~~~~~~~GT~VtF~PD~eiF~~-~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 186 KYKQVFSNNMGKKSEPV--I--TKCKKSENWTKVTFKPDLAKFNM-THLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EEEEEEeCCCCccCCce--e--ccCCCCCCceEEEEEECHHHhCC-ceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 99999998 5555442 1 11223479999999999999975 46999876 58899999 99999999999998
Q ss_pred CCCCCCceeEEEeCCcHHHHHHHHccC----CCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccc
Q 007003 287 SDPEKNQYNEYFFAGGLEEYVQWLNTD----KKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTH 362 (622)
Q Consensus 287 ~~~~~~~~~~f~~~~Gl~dyv~~l~~~----~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTH 362 (622)
.+ .+||++||+++... +.+.++++ +. ..+..||||++|+ ++ .++++||||+|+|++||||
T Consensus 261 ~~-----------~~G~kdYV~~yl~~~~k~k~~~~~~i-~e--~~~~~~EVAl~~s-d~-~~~~~SFVNnI~T~~GGTH 324 (1465)
T PLN03237 261 IP-----------VKSFSDYVDLYLESANKSRPENLPRI-YE--KVNDRWEVCVSLS-EG-QFQQVSFVNSIATIKGGTH 324 (1465)
T ss_pred CC-----------CCCHHHHHHHHhhcccccCCCCCCcc-Ee--cCCCeEEEEEEEe-CC-CceEEEEECcccCCCCCcH
Confidence 43 25999999975432 12223322 33 3456799999999 45 4789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHH---
Q 007003 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLT--- 439 (622)
Q Consensus 363 v~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~--- 439 (622)
|+||+++|++.|+++++++ +++.+++++|||+||++||||+|+||+|+||||++|+|+++. +.+++.
T Consensus 325 v~g~~~aIt~~l~~~~~kK----~k~~~l~~~DIregL~a~IsvkI~nP~FesQTKekLtn~~~~------f~s~l~l~~ 394 (1465)
T PLN03237 325 VDYVTNQIANHVMEAVNKK----NKNANIKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSS------FGSKCELSE 394 (1465)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCCCCHHHHHhCcEEEEEEeCCCCccCCcccCcccChHHH------HHHHhccCH
Confidence 9999999999999998763 234589999999999999999999999999999999998753 455565
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cccCCCCCCcCCCC---CCCCCcceEEEEecCCCCCccc
Q 007003 440 EYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSV--LRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSAK 514 (622)
Q Consensus 440 ~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~~r~k~~--~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gsak 514 (622)
.|++ +..++.|+++++.++++ +++|++.|+|.. .....+| ||+||+ ++++++|||||||||||||||+
T Consensus 395 ~flk--~~~~~~Ivekil~~A~a----k~arel~k~k~~k~~~~~~ip-KL~Dc~~aG~kd~~~ceLfLvEGDSAgGsAk 467 (1465)
T PLN03237 395 DFLK--KVMKSGIVENLLSWADF----KQSKELKKTDGAKTTRVTGIP-KLEDANEAGGKNSEKCTLILTEGDSAKALAV 467 (1465)
T ss_pred HHHh--HHHHHHHHHHHHHHHHH----HHHHHHHhhhcccccccCCCc-ccccccccccCCccccEEEEEecCcCCchhh
Confidence 6665 34667799999877765 567777776544 2333455 999997 6899999999999999999999
Q ss_pred ccC---CCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHH
Q 007003 515 QGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLL 591 (622)
Q Consensus 515 ~gR---dr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Ll 591 (622)
||| ||+|||||||||||||||+++.+||++|+||++|++|||||++.++||+++|||||||||||||||||||||||
T Consensus 468 ~GR~vvdR~~qaIlPLRGKILNV~kAs~~kil~N~EI~~ii~aLGlgig~~y~d~~~LRYgkIiIMTDADvDGsHIrgLL 547 (1465)
T PLN03237 468 AGLSVVGRNYYGVFPLRGKLLNVREASHKQIMNNAEIENIKQILGLQHGKQYESVKSLRYGHLMIMTDQDHDGSHIKGLL 547 (1465)
T ss_pred hhhcccCccceeeeccCCceehhccCcHHhhhcchHHHHHHHHhCCCcCcccCcccccccCcEEEEeCCCCCccHHHHHH
Confidence 999 89999999999999999999999999999999999999999965667999999999999999999999999999
Q ss_pred HHHHHhhcHhhhh-cCcEEEEcCcEEEEEe
Q 007003 592 LTFFYRYQKTLFD-EGCIYVGVPPLYKVCF 620 (622)
Q Consensus 592 ltff~~~~p~Li~-~G~v~~~~~Pl~kv~~ 620 (622)
|||||+|||+||+ .||||+|+||||||+.
T Consensus 548 LtFF~r~~P~Li~~~Gfl~~~~tPL~Kv~~ 577 (1465)
T PLN03237 548 INFIHSFWPSLLKVPSFLVEFITPIVKATR 577 (1465)
T ss_pred HHHHHHhhHHhcccCCEEEEecCCeEEEEE
Confidence 9999999999999 8999999999999975
No 14
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=100.00 E-value=8.3e-100 Score=842.84 Aligned_cols=510 Identities=32% Similarity=0.454 Sum_probs=446.7
Q ss_pred cccceeccchhhHhhCCCeeeccCCC---------------------ChhhHHHHHHHHhhHHhhhcC-CCCeEEEEEe-
Q 007003 79 SEQIQVLEGLEAVRKRPAMYIGSTGP---------------------RGLHHLVYEILDNAVDEAQAG-YASNIEVALL- 135 (622)
Q Consensus 79 ~~~i~~L~~~E~Vr~RP~mYiGs~~~---------------------~gL~~lv~EildNaiDe~~~g-~~~~I~V~i~- 135 (622)
++.||+.+++||++.||+.||||+++ |||+|+++||++||+| .+++ .++.|.|+|+
T Consensus 5 ~~~yqkks~~ehiL~rPdtyig~ve~~~~~~wv~~~e~~k~~~~t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~~ 83 (842)
T KOG0355|consen 5 EDIYQKKSQLEHILLRPDTYIGSVEPTEQLMWVYDMEKRKMVQRTYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTIDK 83 (842)
T ss_pred HHHHhhhhhhhhhhcCCcccccccccceeEEeeeccccCceeEeecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEcc
Confidence 45789999999999999999999974 7999999999999999 7775 4899999999
Q ss_pred CCCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEE--eCCEE
Q 007003 136 ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW--RDGME 213 (622)
Q Consensus 136 ~dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~--r~g~~ 213 (622)
+++.|+|+|||+|||++.||.+++++||++|+.|||++||+++ ..+++||+||+|++++|++|..|.++|. +.++.
T Consensus 84 e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~d~--ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~ 161 (842)
T KOG0355|consen 84 EKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMA 161 (842)
T ss_pred CCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccccCCC--ccccccCCCccceeeeeeccccceeeeeehHhHHH
Confidence 5889999999999999999999999999999999999999998 8899999999999999999999999996 45788
Q ss_pred EEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHH---HHHHHHHHhhhCCCcEEEEeeCCCCCC
Q 007003 214 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDPE 290 (622)
Q Consensus 214 y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~---i~~rl~elA~lnpgl~I~l~d~~~~~~ 290 (622)
|+|+|.+||+.+..+.++. ..++.||+|+|+||.+.|.+. ++|-|+ +.+|+.++|....++++.+++++..
T Consensus 162 ~kQ~w~~nm~~~~~~~i~~---~~~~~yTkitF~PDl~~F~m~-eLD~Div~l~~rr~~d~a~~~~~vkv~ln~~~~~-- 235 (842)
T KOG0355|consen 162 FKQTWINNMTRDEEPKIVP---STDEDYTKITFSPDLEKFKMK-ELDDDIVALMARRAYDLAGSVKSVKVELNGKNIP-- 235 (842)
T ss_pred HHHhhhcCCcccCCceeec---CCCCCcceEEeCcChHhcCch-hhcchHHHhHHhhhhhhcccccceeeeecCCCCc--
Confidence 9999999999987765543 344559999999999999975 588765 5789999998779999999998854
Q ss_pred CCceeEEEeCCcHHHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHH
Q 007003 291 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370 (622)
Q Consensus 291 ~~~~~~f~~~~Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al 370 (622)
-+|+.+|+..+.. ..+...+.....+..+-+||++++-++.+|+ ++||||+|+|.+|||||+++++++
T Consensus 236 ---------~~~f~~yv~~~~~-~~~~~~~~~~ihe~~~~RwEv~~a~s~~~fq--qisfvNsI~T~kGGThVd~V~D~i 303 (842)
T KOG0355|consen 236 ---------VKGFYDYVKMYLE-VLWLNDDLKPLHEVLNFRWEVALALSDVGFQ--QVSFVNSIATTKGGTHVDYVVDQI 303 (842)
T ss_pred ---------cchHHHHHhhccc-cccccCcchhhhcccchHHHHhhhccccccc--eeeeecceeecCCCcccchhhhhH
Confidence 2589999999886 3333222222233445567788877754554 599999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHH
Q 007003 371 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLD 450 (622)
Q Consensus 371 ~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~ 450 (622)
++.++...++.+.. ++.++++.+++++|+++|+|.|+||.|+||||++|+++..+..+.+.+++.+.+.+.+++ +++
T Consensus 304 v~~l~~vvkKk~~~--~~~svk~f~vkn~L~vfVN~lIENPtFesQTke~lt~~~~~fgs~~elsek~~k~~~~~~-i~e 380 (842)
T KOG0355|consen 304 VAKLIDVVKKKKVK--KDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKRFGSDCELSEKFTKAIELKG-VVE 380 (842)
T ss_pred HHHHHHHhcccccc--cccccchhhhhcceEEEEEEEecCccccccchhhcccccccccceEeehhHHHHHHHhCc-hHH
Confidence 99999998876543 457899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCCC---CCCCCcceEEEEecCCCCCcc---cccCCCCceee
Q 007003 451 SILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGSA---KQGRDRRFQAI 524 (622)
Q Consensus 451 ~I~~k~~~~~ka~~aakkar~~~r~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gsa---k~gRdr~~qai 524 (622)
.|++++..+.+...+.+++++..+.+ .+| ||.|+. .+.+..|+|+++|||||+..| +...+|++++|
T Consensus 381 sils~s~~~~~~dL~kk~~~~~s~~e------~I~-KleDa~~ag~k~s~kctlIltEgdsaksLavsGl~vvgRd~~gV 453 (842)
T KOG0355|consen 381 SILSKSLNKYKDDLAKKRGKLTSRSK------GIP-KLEDANDAGTKTSEKCTLILTEGDSAKSLAVSGLSVVGRDYYGV 453 (842)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhcccc------chh-HhhhcccccccccccceeEEeccccchhheecccccccceeEee
Confidence 99999988888777666666443333 234 888864 467889999999999997544 44467889999
Q ss_pred cccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhh
Q 007003 525 LPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD 604 (622)
Q Consensus 525 lPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~ 604 (622)
||||||+|||++++.+++++|+||++|+.+||++....+|+.++|||||+|||||||+|||||+||||||||+|||+|++
T Consensus 454 fplrgklLNv~e~s~kqilkn~EI~aIikIlgl~~~~~y~~~eslryg~~mimtDQd~dgshikgllInf~~~~~psl~~ 533 (842)
T KOG0355|consen 454 FPLRGKLLNVREASHKQILKNAEINAIIKILGLQYKKKYFDVESLRYGKLMIMTDQDHDGSHIKGLLINFIHHFWPSLLQ 533 (842)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhheEeeeccccccchHHHHHHHHHHHhhHHhhc
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCcEEEEcCcEEEEE
Q 007003 605 EGCIYVGVPPLYKVC 619 (622)
Q Consensus 605 ~G~v~~~~~Pl~kv~ 619 (622)
.+||+.|.||++|++
T Consensus 534 ~~fleefitpi~k~~ 548 (842)
T KOG0355|consen 534 IPFLEEFITPIVKAT 548 (842)
T ss_pred CCcceecCCcceEec
Confidence 999999999999986
No 15
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. DNA gyrase is more effective at relaxing supercoils than decatentating DNA. DNA gyrase in addition inserts negative supercoils in the presence of ATP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleava
Probab=100.00 E-value=1.5e-58 Score=409.15 Aligned_cols=114 Identities=73% Similarity=1.166 Sum_probs=112.1
Q ss_pred ceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEee
Q 007003 499 SEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 578 (622)
Q Consensus 499 ~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImT 578 (622)
|||||||||||||||||||||+||||||||||||||||++.+|+++|+||++|++||||++ +++||+++||||||||||
T Consensus 1 ~eL~lvEGDSAggsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~-~~~~~~~~lrY~kiiimt 79 (114)
T cd03366 1 SELYIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDKILKNEEIRALITALGTGI-GEDFDLEKLRYHKIIIMT 79 (114)
T ss_pred CEEEEEeCCCCccccccccCcCceEEeccCCccchHhhccHHHHhcChHHHHHHHHhCCCC-CCCCChhhCCcCeEEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999999 478999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcC
Q 007003 579 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613 (622)
Q Consensus 579 DaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~ 613 (622)
|||+||+||++|||||||||||+|+++||||+++|
T Consensus 80 DaD~DG~hI~~Llltff~~~~p~Li~~G~vyia~p 114 (114)
T cd03366 80 DADVDGAHIRTLLLTFFFRYMRPLIENGHVYIAQP 114 (114)
T ss_pred CCCCCchHHHHHHHHHHHHHhHHHHhCCeEEEecC
Confidence 99999999999999999999999999999999987
No 16
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=100.00 E-value=2.4e-57 Score=403.80 Aligned_cols=115 Identities=64% Similarity=1.060 Sum_probs=113.1
Q ss_pred ceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEee
Q 007003 499 SEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 578 (622)
Q Consensus 499 ~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImT 578 (622)
|||||||||||||||||||||+||||||||||||||||++.+|+++|+||++|++||||+++.+++|+++||||||||||
T Consensus 1 ~eL~lvEGDSA~gsak~gR~~~~qailPLrGKiLNv~ka~~~k~~~n~Ei~~l~~alG~~~~~~~~~~~~lrY~kiiimt 80 (115)
T cd01030 1 CELILVEGDSAGGSAKQGRDRVFQAVFPLRGKILNVEKASLKKILKNEEIQNIIKALGLGIGKDDFDLDKLRYGKIIIMT 80 (115)
T ss_pred CEEEEEecCCcchhhhhhcCcccEEEeccCCeeccHhcCCHHHHhcChHHHHHHHHhCCCCCcccCChhhcCcCeEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999997688999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcC
Q 007003 579 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613 (622)
Q Consensus 579 DaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~ 613 (622)
|||+||+||++|||||||||||+|+++||||+++|
T Consensus 81 DaD~DG~hI~~Llltff~~~~p~Li~~G~v~~~~~ 115 (115)
T cd01030 81 DADVDGSHIRTLLLTFFYRFWPSLLENGFLYIAQT 115 (115)
T ss_pred CCCCCccHhHHHHHHHHHHHhhHhhhCCEEEEeeC
Confidence 99999999999999999999999999999999987
No 17
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofact
Probab=100.00 E-value=3.4e-54 Score=385.77 Aligned_cols=115 Identities=35% Similarity=0.597 Sum_probs=110.5
Q ss_pred ceEEEEecCCCCCcccccC---CCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCC-CCCCcCCCCCCce
Q 007003 499 SEIFIVEGDSAGGSAKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKG-EDFKKEALRYHKI 574 (622)
Q Consensus 499 ~eL~lvEGDSA~Gsak~gR---dr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~-~~~~~~~LRY~kI 574 (622)
||||||||||||||||||| ||+||||||||||||||||++.+|+++|+||++|++||||+++. +++|+++|||+||
T Consensus 1 ~eLflvEGDSA~gsak~gr~~~dr~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~li~alG~g~~~~~~~~~~~lrY~ki 80 (120)
T cd03365 1 CTLILTEGDSAKALAVAGLSVVGRDYYGVFPLRGKLLNVREASHKQIMENAEIQNIKKILGLQHGKSDYESTKSLRYGRL 80 (120)
T ss_pred CEEEEEeCCCchhhHHhhhccCCCceEEEeccCCccchhhcCCHHHHhcCHHHHHHHHHhCCCCCcccccccccCCcCeE
Confidence 8999999999999999999 89999999999999999999999999999999999999999964 3489999999999
Q ss_pred EEeeCCCCCCCchHHHHHHHHHhhcHhhhhc-CcEEEEcC
Q 007003 575 IILTDADVDGAHIRTLLLTFFYRYQKTLFDE-GCIYVGVP 613 (622)
Q Consensus 575 iImTDaDvDGsHI~~Llltff~~~~p~Li~~-G~v~~~~~ 613 (622)
|||||||+||+||++|||||||||||+|+++ |||+.+.|
T Consensus 81 iimtDaD~DG~hI~~Llltff~r~~p~Li~~~~fi~~~~t 120 (120)
T cd03365 81 MIMTDQDHDGSHIKGLLINFIHSFWPSLLKIPGFLVEFIT 120 (120)
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHhHHHhcCCCHHHHhcC
Confidence 9999999999999999999999999999997 99988765
No 18
>cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are heterodimers composed of two subunits. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. E.coli DNA gyrase is a
Probab=100.00 E-value=2.3e-41 Score=327.22 Aligned_cols=170 Identities=48% Similarity=0.851 Sum_probs=162.0
Q ss_pred CcHHHHHHHHccCCCCCC-ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHh
Q 007003 301 GGLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGK 379 (622)
Q Consensus 301 ~Gl~dyv~~l~~~~~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~k 379 (622)
|||.+||++++.++++++ ++++|.++.+++.|||||+|+ ++|+++++||||+|+|.+||||++||+++|+++||+|++
T Consensus 1 gGl~~fl~~l~~~~~~l~~~~i~~~~~~~~~~veva~~~~-~~~~~~~~sfvN~i~T~~GGTH~~g~~~~l~~~i~~~~~ 79 (172)
T cd00822 1 GGLKDFVEELNKDKEPLHEEPIYIEGEKDGVEVEVALQWT-DSYSENILSFVNNIPTPEGGTHETGFRAALTRAINDYAK 79 (172)
T ss_pred CCHHHHHHHHhCCCCcCCCCCeEEEEEecceEEEEEEEEe-CCCCeEEEEeECcccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999998887 788888887789999999999 688899999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 007003 380 KSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSA 459 (622)
Q Consensus 380 k~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~ 459 (622)
+.++.|+++.+++++||+++|+++|+|+++||+|+||||++|+|++++.+|++++.+.|..||++||+.++.|+++++.+
T Consensus 80 ~~~~~k~~~~~~~~~di~~~l~~vvsv~~~~P~F~gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n~~~a~~i~~k~~~~ 159 (172)
T cd00822 80 KNNLLKKKDVKLTGDDIREGLTAVISVKVPEPQFEGQTKDKLGNSEVRSIVESAVREALEEWLEENPEEAKKILEKAILA 159 (172)
T ss_pred HhCcccccCCCCCHHHHHhCcEEEEEEEcCCCccCCcccccccCHhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 98888776679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 007003 460 LKAALAAKRARD 471 (622)
Q Consensus 460 ~ka~~aakkar~ 471 (622)
+++|++++++|+
T Consensus 160 ~~aR~aa~~ar~ 171 (172)
T cd00822 160 AKAREAARKARE 171 (172)
T ss_pred HHHHHHHHHhhc
Confidence 999999999886
No 19
>PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions, domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents the second domain found in subunit B (gyrB and parE) of bacterial gyrase and topoisomerase IV, and the equivalent N-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3LPS_A 3LNU_A 1KIJ_B 1EI1_B 1S16_B 1QZR_B 1PVG_A 3CWV_B 1ZXN_A 1ZXM_B ....
Probab=100.00 E-value=2.6e-40 Score=320.52 Aligned_cols=168 Identities=43% Similarity=0.817 Sum_probs=152.8
Q ss_pred cHHHHHHHHccCCCCCC-ceeEEEeec--cc-eEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHH
Q 007003 302 GLEEYVQWLNTDKKPLH-DVVGFRKDV--DG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL 377 (622)
Q Consensus 302 Gl~dyv~~l~~~~~~~~-~~i~~~~~~--~~-~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~ 377 (622)
||+||+++++.++++++ +++++..+. ++ +.|+||++|+ +++.+.++||||+|+|++||||++||+++|+++|++|
T Consensus 1 G~~dyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~va~~~~-~~~~~~~~SfvN~i~T~~GGtHv~g~~~~i~~~i~~~ 79 (173)
T PF00204_consen 1 GFKDYVKLLNKDKEPLHPEPIYFEGEDKENDRWEVEVAFQWT-SGYDEKIVSFVNNIPTPEGGTHVDGFKDAITKAINDY 79 (173)
T ss_dssp SHHHHHHHHCTTS-BSSSSEEEEEEEEE-TTTEEEEEEEEEB-SSSSCEEEEEETTEE-TTEBHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCcCCCCCeEEEEEeccCCcEEEEEEEEec-CCCceeeeeeeccccccccccHHHHHHHHHHHHHHHh
Confidence 79999999999988887 578888776 54 9999999999 6777799999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHH
Q 007003 378 GKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 457 (622)
Q Consensus 378 ~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~ 457 (622)
++++++.|++. +++++||++||++||+|+|+||+|+||||++|+|++++..|+.++.+.|..||++||++++.|+++++
T Consensus 80 ~~k~~~~k~~~-~i~~~di~~~l~~vv~~~i~nP~F~gQTK~~L~~~~~~~~v~~~v~~~l~~~l~~n~~~~~~i~~~~~ 158 (173)
T PF00204_consen 80 AKKKNKLKKKD-KITPEDIREGLTAVVSVKIPNPQFEGQTKEKLTNPEVRSIVEKAVSEKLEKWLEKNPEIAKAIIEKAL 158 (173)
T ss_dssp HHHTTCCCTTT-GSSHHHHHTTEEEEEEEEESSG-BSSTTTTSB--HHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHH
T ss_pred HhhhCcccccc-ccchhhcccccEEEEEEEEecccccccccceeeHHHhhhhhhhhhHHHHHHHHHHCHHHHHHHHHHHH
Confidence 99999887766 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007003 458 SALKAALAAKRARD 471 (622)
Q Consensus 458 ~~~ka~~aakkar~ 471 (622)
.++++|+++|+|||
T Consensus 159 ~~~~~r~~ak~are 172 (173)
T PF00204_consen 159 QAAKAREAAKKARE 172 (173)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999986
No 20
>cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA. S. cerevisiae Topo IIA is a homodimer encoded by a single gene. The type IIA enzymes are the predominant form of topoisomerase and are found in some bacteriophages, viruses and archaea, and in all bacteria and eukaryotes. All type IIA topoisomerases are related to each other at amino acid sequence level, though their oligomeric organization sometimes differs. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. TopoIIA enzymes also catenate/ decatenate duplex rings. This transducer domain is homologous to t
Probab=99.97 E-value=3.3e-30 Score=243.99 Aligned_cols=146 Identities=23% Similarity=0.286 Sum_probs=116.3
Q ss_pred cHHHHHHHHccCCCCC---CceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHH
Q 007003 302 GLEEYVQWLNTDKKPL---HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLG 378 (622)
Q Consensus 302 Gl~dyv~~l~~~~~~~---~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~ 378 (622)
++++|++++..+..+. .+++.+ +..+-+||||++|+ ++ +++++||||+|+|.+||||++||+++|+++|++|+
T Consensus 2 ~f~~Y~~ly~~~~~~~~~~~~~~~~--~~~~~~veva~~~s-~~-~~~~~SFvN~I~T~~GGTHv~g~~~~lt~~i~~~~ 77 (153)
T cd03481 2 SFKDYVKLYLKDANKEDGPPPPVVY--EPVNDRWEVAVALS-DG-QFQQVSFVNSIATTKGGTHVDYVADQIVKKLDEVV 77 (153)
T ss_pred CHHHHHHHHhcccccccCCCCCeEe--ccCCCcEEEEEEEc-CC-CcEEEEEECCcCCCCCCchHHHHHHHHHHHHHHHH
Confidence 5899999986432110 123333 22234689999999 44 68899999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHH
Q 007003 379 KKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLS 458 (622)
Q Consensus 379 kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~ 458 (622)
++++ | ++.+++++|||+||++||+|+++||+|+||||++|+|++-.......+.+.|.+|+.++ .|+++++.
T Consensus 78 ~kk~--k-~~~~i~~~dire~l~~vvs~~i~~P~FegQTK~kL~s~~~~~~~~~~~~~~~~~~~~k~-----~ii~~i~~ 149 (153)
T cd03481 78 KKKN--K-GGINVKPFQVKNHLWIFVNCLIENPSFDSQTKETLTTKPKSFGSKCELSEKFLKKAVKS-----GIVESVLS 149 (153)
T ss_pred HHcC--C-CCCCcCHHHHhcCeEEEEEEecCCCccCCcccccccCcccccccccccCHHHHHHHHHc-----hHHHHHHH
Confidence 8765 2 24689999999999999999999999999999999999855444558899999999876 55555554
Q ss_pred H
Q 007003 459 A 459 (622)
Q Consensus 459 ~ 459 (622)
+
T Consensus 150 ~ 150 (153)
T cd03481 150 W 150 (153)
T ss_pred H
Confidence 3
No 21
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.95 E-value=1.5e-26 Score=263.95 Aligned_cols=260 Identities=18% Similarity=0.235 Sum_probs=198.1
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
...+.++|+|||+||+|+ | |+.|.|+++.+| +|+|.|||+|||.+. ++.++. .|++||+...++.
T Consensus 20 I~~~~svvkElveNsiDA---g-at~I~v~i~~~g~~~i~V~DnG~Gi~~~~--------~~~~~~-~~~tsKi~~~~dl 86 (617)
T PRK00095 20 VERPASVVKELVENALDA---G-ATRIDIEIEEGGLKLIRVRDNGCGISKED--------LALALA-RHATSKIASLDDL 86 (617)
T ss_pred ccCHHHHHHHHHHHHHhC---C-CCEEEEEEEeCCeEEEEEEEcCCCCCHHH--------HHHHhh-ccCCCCCCChhHh
Confidence 367899999999999996 6 999999998888 899999999999986 445666 5999999875446
Q ss_pred ee-eecCcccccchhhhhccCceEEEEEeC--CEEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEE------eCccc
Q 007003 182 YS-VSGGLHGVGLSVVNALSESLEVTVWRD--GMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW------PDKQV 252 (622)
Q Consensus 182 y~-~sgG~~GvGls~vNalS~~~~V~t~r~--g~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~------PD~~i 252 (622)
+. .|.||||+||++++++| +++|+|+++ +..|.+.|++|.+.... +...++||+|+|+ |++.+
T Consensus 87 ~~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~-------~~~~~~GT~V~v~~LF~n~P~Rrk 158 (617)
T PRK00095 87 EAIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVK-------PAAHPVGTTIEVRDLFFNTPARRK 158 (617)
T ss_pred hccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCccee-------cccCCCCCEEEechhhccCcHHHH
Confidence 65 68999999999999998 799999986 56899999999765321 2345799999997 99999
Q ss_pred cccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeC--CcHHHHHHHHccCCCCCCceeEEEeeccce
Q 007003 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEEYVQWLNTDKKPLHDVVGFRKDVDGI 330 (622)
Q Consensus 253 F~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~--~Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~ 330 (622)
|..+...+++.|.++++++|++||+++|.|.+++ +..|+++ +++.+++..+.+.. ...+.+.+..+.+++
T Consensus 159 flk~~~~e~~~i~~~v~~~Al~~p~i~f~l~~~~-------~~~~~~~~~~~~~~~i~~i~g~~-~~~~l~~~~~~~~~~ 230 (617)
T PRK00095 159 FLKSEKTELGHIDDVVNRLALAHPDVAFTLTHNG-------KLVLQTRGAGQLLQRLAAILGRE-FAENALPIDAEHGDL 230 (617)
T ss_pred hccCcHHHHHHHHHHHHHHhhcCCCcEEEEEECC-------EEEEEeCCCCCHHHHHHHHhCHH-hHhheEEEeccCCCE
Confidence 9765567888999999999999999999999864 3568887 45999998876532 223455566666677
Q ss_pred EEE--EEE-EecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEe
Q 007003 331 TID--LAL-QWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 407 (622)
Q Consensus 331 ~ve--val-~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~ 407 (622)
.++ ++. .|+ ......++.|||++++.. ..|.++|++..+.... + ...-.+++++.
T Consensus 231 ~i~g~is~p~~~-~~~~~~~~~fvN~R~v~~---------~~l~~ai~~~y~~~~~-~-----------~~~P~~~l~i~ 288 (617)
T PRK00095 231 RLSGYVGLPTLS-RANRDYQYLFVNGRYVRD---------KLLNHAIRQAYHDLLP-R-----------GRYPAFVLFLE 288 (617)
T ss_pred EEEEEEeCcccc-cCCCcceEEEECCcEecC---------HHHHHHHHHHHHHhcc-C-----------CCCcEEEEEEE
Confidence 777 554 455 445577899999999874 3455555443332111 1 11227788888
Q ss_pred ecCCCCC
Q 007003 408 VPNPEFE 414 (622)
Q Consensus 408 i~nP~Fe 414 (622)
++.-.+|
T Consensus 289 ~~~~~~D 295 (617)
T PRK00095 289 LDPHQVD 295 (617)
T ss_pred eChHhcc
Confidence 8755555
No 22
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.3e-22 Score=214.76 Aligned_cols=332 Identities=22% Similarity=0.328 Sum_probs=221.3
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhh-cCCCCeEEEEEeCCC----eEEEEECCCCccCCCc
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLADN----SVSVADNGRGIPIDLH 154 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~-~g~~~~I~V~i~~dg----~IsV~DnGrGIP~~~h 154 (622)
+.++.++..|++||++.|.--+...++|...|+|+|+||+|++. +|..+.|.|+|+.-| .|.|+|||.|||.+..
T Consensus 10 e~~re~SvAEFF~kNk~mlGf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~I 89 (538)
T COG1389 10 EKFRELSVAEFFRKNKEMLGFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQI 89 (538)
T ss_pred hhhhhcCHHHHHHhCHHhcCCCCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHh
Confidence 45889999999999999996666789999999999999999997 799999999999643 7999999999999876
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCce-----EEEEEeC--CEEEEEEEe----CCcc
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWRD--GMEYHQKYS----RGKP 223 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~-----~V~t~r~--g~~y~q~f~----~G~~ 223 (622)
| .||+++++||||+ ..++|.|+.|+|+|.+..+|+.. +|.++.. +..|..+.. .|.|
T Consensus 90 P--------kvFGk~LygSKfh----~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp 157 (538)
T COG1389 90 P--------KVFGKMLYGSKFH----RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEP 157 (538)
T ss_pred H--------HHHHHHhccchhh----hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcc
Confidence 6 5999999999997 44899999999999999999765 3666655 355555553 3444
Q ss_pred cccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHH-HHHHHHHHhhhCCCcEEEEeeCCCCC--------C--CC
Q 007003 224 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT-IAGRIRELAFLNPKLTIALRKEDSDP--------E--KN 292 (622)
Q Consensus 224 ~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~-i~~rl~elA~lnpgl~I~l~d~~~~~--------~--~~ 292 (622)
..-.. ... ....+++||+|+.. |....--.... +.++|+++|..||+.+|.|.|...+. + ++
T Consensus 158 ~Iv~r-~~~-~~~~~~hGT~Vel~-----~~~~~~~~~~qgi~eYlkrtaiinPhA~I~l~dPdG~~~vf~r~t~~lP~p 230 (538)
T COG1389 158 EIVER-GEV-ENPGGWHGTRVELE-----LKGVWYRAKRQGIYEYLKRTAIINPHARIVLKDPDGNLVVFPRSTDKLPKP 230 (538)
T ss_pred hhhhc-ccc-cCCCCCCceEEEEE-----ecccchhhcccCHHHHHHHHhhcCCceEEEEECCCCcEEEeccchhhCCCC
Confidence 32110 001 14456899999998 43221111234 89999999999999999999987420 0 01
Q ss_pred ceeEEEeCCc-----------------HH----------------HHHHHHc--cCC-----------------------
Q 007003 293 QYNEYFFAGG-----------------LE----------------EYVQWLN--TDK----------------------- 314 (622)
Q Consensus 293 ~~~~f~~~~G-----------------l~----------------dyv~~l~--~~~----------------------- 314 (622)
.++..=+|.| +. +++++.. .++
T Consensus 231 P~E~kPHP~gvd~~~L~~M~~~T~~~tv~~fL~sef~rig~~ta~e~~e~~g~~~~~~p~~L~~~~~~eea~~lv~a~~~ 310 (538)
T COG1389 231 PKEIKPHPHGVDLDTLKKMAHRTRRSTVREFLVSEFSRIGEKTADELLEYAGFDPDKKPRELTKKKTREEAEKLVEAFKK 310 (538)
T ss_pred ccccCCCCccccHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhHHHHHHHhcCCcccCHHHhhcccCHHHHHHHHHHHHh
Confidence 1111111222 11 1111110 000
Q ss_pred -CCCC------cee---------------EEEe----e---c--cceEEEEEEEecCC---CCCceeeeeeCceec-cCC
Q 007003 315 -KPLH------DVV---------------GFRK----D---V--DGITIDLALQWCSD---AYSDTMLGYANSIRT-IDG 359 (622)
Q Consensus 315 -~~~~------~~i---------------~~~~----~---~--~~~~veval~~s~~---~~~~~~~SFVN~I~T-~~G 359 (622)
+.+. .|| .|.. . . .-..||+|+.|-.+ +..-.+.-|+|-|+- .+-
T Consensus 311 ~~fm~Pptd~LsPIGee~ie~gLk~~~~pefv~avTRkPkvy~G~pFiVEvgiAYGG~i~~~e~~~llRyANrvPLlyd~ 390 (538)
T COG1389 311 MKFMAPPTDGLSPIGEELIEKGLKSILNPEFVAAVTRKPKVYRGHPFIVEVGIAYGGNIPGGEKPLLLRYANRVPLLYDA 390 (538)
T ss_pred CcccCCCccccCcccHHHHHHHHHHhcCchheeeeccCccccCCCceEEEEEeeccCCCCCCcchhhhhhcccCceeeec
Confidence 0000 011 0110 0 0 12578999999631 112358899999983 333
Q ss_pred ccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCccccccc-Ccccccchhhhh---h
Q 007003 360 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLG-NPEVRKVVDQSV---Q 435 (622)
Q Consensus 360 GTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~-n~ev~~~v~~~v---~ 435 (622)
|. .++++++.++ .+++. ++...+ .-|.++|+|--+|-.|.|--|+..+ .|++..-+..++ .
T Consensus 391 g~------cv~tk~V~~i-~WkrY------gl~~~~--aplvvlVhv~St~VPyts~gKqsIa~vpeIe~Eir~Al~eva 455 (538)
T COG1389 391 GS------CVITKVVESI-DWKRY------GLDQPD--APLVVLVHVASTNVPYTSAGKQSIADVPEIENEIRLALMEVA 455 (538)
T ss_pred Cc------chhhHhhhhc-cceec------CcCCCC--CcEEEEEEecccCCCcCCccchhccccHHHHHHHHHHHHHHH
Confidence 33 3556777554 22221 122222 5689999999999999999999998 566655555544 3
Q ss_pred HHHHHHHhhC
Q 007003 436 EYLTEYLELH 445 (622)
Q Consensus 436 ~~l~~~l~~n 445 (622)
.+|..||...
T Consensus 456 RkL~~yLsrk 465 (538)
T COG1389 456 RKLKLYLSRK 465 (538)
T ss_pred HHHHHHHHHH
Confidence 5788888654
No 23
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.87 E-value=2.4e-22 Score=220.61 Aligned_cols=284 Identities=24% Similarity=0.292 Sum_probs=196.4
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhh-cCCCCeEEEEEeC-C-C--eEEEEECCCCccCCCc
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLA-D-N--SVSVADNGRGIPIDLH 154 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~-~g~~~~I~V~i~~-d-g--~IsV~DnGrGIP~~~h 154 (622)
++.+.++..|+++|++.|---+...++|.++++|+|+||+|+.. .|....|.|.+.. + + .|+|.|||.|||.+..
T Consensus 2 ~~~~~~s~aEFF~kN~~~~Gf~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl 81 (488)
T TIGR01052 2 EKFREMSVAEFFRKNKHMLGYSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYI 81 (488)
T ss_pred CcccccCHHHHHHhCCccccccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHH
Confidence 45788999999999999996666678999999999999999975 3555689998874 2 2 6999999999999864
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCc-----eEEEEEeCCEE--EEEEEe------CC
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDGME--YHQKYS------RG 221 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~-----~~V~t~r~g~~--y~q~f~------~G 221 (622)
+.+|..+|+|+||... ..+.|++|+|+++++++|+. ++|+++++|.. |++++. +|
T Consensus 82 --------~~iF~rf~~tsK~~~~----~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G 149 (488)
T TIGR01052 82 --------PKVFGKMLAGSKFHRI----IQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEG 149 (488)
T ss_pred --------HhhhhhccccCccccc----cccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCC
Confidence 4689999999999643 56889999999999999975 88999987754 578874 46
Q ss_pred cccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCC
Q 007003 222 KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (622)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~ 301 (622)
....... . +...++||+|+++++.... .+....|.++|+++|++||+++|.|.++.. +.+.|+.
T Consensus 150 ~i~~~~~-~----~~~~~~GT~V~v~f~~~~~----r~~k~~i~e~l~~~Al~nP~~~i~l~~~~~-------~~~~f~R 213 (488)
T TIGR01052 150 EIVEKGE-W----NKPGWRGTRIELEFKGVSY----RRSKQGVYEYLRRTAVANPHAKIVLVDPDG-------EIYVFPR 213 (488)
T ss_pred eecceee-c----CCCCCCceEEEEEECCcee----eccHHHHHHHHHHHHhhCCCeEEEEEeCCC-------CEEEeec
Confidence 5544321 1 2233689999999655432 124579999999999999999999998752 3466665
Q ss_pred cHHHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhc
Q 007003 302 GLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS 381 (622)
Q Consensus 302 Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~ 381 (622)
-. +.-|. +|..+..+..|++++.-++.-..+-...+.+|..+-.+.-|..+.+-+ ++..
T Consensus 214 ~~---------~~~P~-~p~e~kpHP~gv~~~~l~~m~~~t~~~~l~~fL~~~f~~v~~~~a~~~-----------~~~~ 272 (488)
T TIGR01052 214 ST---------DEIPK-PPKEMKPHPHGVTIDDLKSMARSTRASTLRSFLVSEFSRIGEKKIKEL-----------LEKY 272 (488)
T ss_pred cc---------ccCCC-CCccCCCCCCccCHHHHHHHHHhcCcccHHHHHHHhhcccCHHHHHHH-----------HHHh
Confidence 31 11111 244455555665443211111111123577787777777774444333 3333
Q ss_pred cCC----CCCCCCCCHHhHhcccEEEEEEeecCCC
Q 007003 382 KTV----KDKDISLSGEHVREGLTCIISVRVPNPE 412 (622)
Q Consensus 382 ~~~----k~~~~~l~~~diregL~~vvsv~i~nP~ 412 (622)
+.. +....+++.+++..-+-++=..++..|.
T Consensus 273 g~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~P~ 307 (488)
T TIGR01052 273 GIDVDPLDKKPKELTWDEAEKIVNAFKEMKFMAPP 307 (488)
T ss_pred CCCccccCCChhhCCHHHHHHHHHHHHhcCCCCCC
Confidence 322 2223467777777766666555555554
No 24
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.2e-20 Score=215.20 Aligned_cols=259 Identities=18% Similarity=0.255 Sum_probs=182.3
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCce
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y 182 (622)
....++|+|||+||||+ | |++|.|+++.+| .|.|.|||.||+.+. +++++.+ ||+||..+.+|.+
T Consensus 22 erPaSVVKELVENSlDA---G-At~I~I~ve~gG~~~I~V~DNG~Gi~~~D--------l~la~~r-HaTSKI~~~~DL~ 88 (638)
T COG0323 22 ERPASVVKELVENSLDA---G-ATRIDIEVEGGGLKLIRVRDNGSGIDKED--------LPLALLR-HATSKIASLEDLF 88 (638)
T ss_pred ecHHHHHHHHHhccccc---C-CCEEEEEEccCCccEEEEEECCCCCCHHH--------HHHHHhh-hccccCCchhHHH
Confidence 56789999999999999 5 999999999887 699999999999986 4466665 9999988765554
Q ss_pred -eeecCcccccchhhhhccCceEEEEEeCC--EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEE------eCcccc
Q 007003 183 -SVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW------PDKQVF 253 (622)
Q Consensus 183 -~~sgG~~GvGls~vNalS~~~~V~t~r~g--~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~------PD~~iF 253 (622)
..|.||+|++|+++..+| +++|++++.+ ..|++.+++|....... +...+.||+|++. |.+.+|
T Consensus 89 ~I~TlGFRGEAL~SIasVs-rlti~Srt~~~~~~~~~~~~g~~~~~~~~------p~a~~~GTtVeV~dLF~NtPaRrKf 161 (638)
T COG0323 89 RIRTLGFRGEALASIASVS-RLTITSRTAEASEGTQIYAEGGGMEVTVK------PAAHPVGTTVEVRDLFYNTPARRKF 161 (638)
T ss_pred HhhccCccHHHHHHHHhhh-eeEEEeecCCcCceEEEEecCCccccccc------CCCCCCCCEEEehHhhccChHHHHh
Confidence 569999999999999998 8999998544 45666666665432321 3466779999987 999999
Q ss_pred ccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEe--CCcHHHHHHHHccCCCCCCceeEEEeeccceE
Q 007003 254 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLNTDKKPLHDVVGFRKDVDGIT 331 (622)
Q Consensus 254 ~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~--~~Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~~ 331 (622)
..+...++..|.+.++++|.++|.++|+|...... ..+.... .+...+.+..+.+.. .....+.++.+.+++.
T Consensus 162 lks~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~----~~~~~~~~~~~~~~~ri~~i~G~~-~~~~~l~i~~~~~~~~ 236 (638)
T COG0323 162 LKSEKTEFGHITELINRYALAHPDISFSLSHNGKL----RIELLKLPGTGDLEERIAAVYGTE-FLKNALPIENEHEDLR 236 (638)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCCeEEEEEECCce----eeEEEecCCCCcHHHHHHHHhCHH-HHHhhcccccCCCceE
Confidence 87777889999999999999999999999987421 1122222 233555566655431 1112333444445554
Q ss_pred EE--EEEE-ecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEee
Q 007003 332 ID--LALQ-WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 408 (622)
Q Consensus 332 ve--val~-~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i 408 (622)
+. ++.. ++ .+-.+.++.|||+.+-.+ ..|.++|.+-... .+.+ ...-++|+.+.+
T Consensus 237 l~G~v~~P~~~-r~~~~~q~~fVNgR~V~~---------~~l~~Ai~~aY~~-~L~~-----------~r~P~~vL~l~l 294 (638)
T COG0323 237 LSGYVSLPEFT-RASRDYQYLFVNGRPVRD---------KLLNHALREAYAD-YLPR-----------GRYPVFVLFLEL 294 (638)
T ss_pred EEEEecccccc-cCCccceEEEECCCEecc---------HHHHHHHHHHHHh-hccC-----------CCCcEEEEEEee
Confidence 43 2222 22 344578999999998766 3556666442221 1111 123478888888
Q ss_pred cC
Q 007003 409 PN 410 (622)
Q Consensus 409 ~n 410 (622)
+.
T Consensus 295 ~p 296 (638)
T COG0323 295 DP 296 (638)
T ss_pred Ch
Confidence 64
No 25
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.81 E-value=7.5e-20 Score=203.04 Aligned_cols=283 Identities=20% Similarity=0.272 Sum_probs=191.0
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhc-CCCCeEEEEEeC----CC--eEEEEECCCCccCC
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA-GYASNIEVALLA----DN--SVSVADNGRGIPID 152 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~-g~~~~I~V~i~~----dg--~IsV~DnGrGIP~~ 152 (622)
++++.++..|+++|++.|..-+...++|.+++.|+|+||+|+... |....|.|.+.. ++ .|+|.|||.|||.+
T Consensus 10 ~~~~~~s~aEfF~kn~~~~gf~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e 89 (535)
T PRK04184 10 EKFREISVAEFFEKNKELLGFDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPE 89 (535)
T ss_pred hhhhhCCHHHHHHhCccceeecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHH
Confidence 348899999999999999977777799999999999999999753 445678888873 22 69999999999998
Q ss_pred CcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCc-----eEEEEEeCC-E-EEEEEEe----C-
Q 007003 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDG-M-EYHQKYS----R- 220 (622)
Q Consensus 153 ~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~-----~~V~t~r~g-~-~y~q~f~----~- 220 (622)
.. +.+|..+++++||... ..+.|++|+|+++++.+|+. ++|+++.++ . .|.+++. .
T Consensus 90 ~l--------~~iF~~f~~~SK~~~~----~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn 157 (535)
T PRK04184 90 EI--------PKVFGKLLYGSKFHNL----RQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKN 157 (535)
T ss_pred HH--------HHHhhhhhcccccccc----ccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEeccccc
Confidence 63 4689988899998642 35779999999999999874 578877654 3 6888874 2
Q ss_pred -CcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEe
Q 007003 221 -GKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 299 (622)
Q Consensus 221 -G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~ 299 (622)
|...... . .....++||+|++.++..++. ....|.++++++|++||+++|.|.+... +.+.|
T Consensus 158 ~g~i~~~~-~----~~~~~~~GT~V~V~l~~~~~~-----~~~~I~e~i~r~Al~nP~~~~~l~~~~g-------~~~~f 220 (535)
T PRK04184 158 EPIILERE-E----VDWDRWHGTRVELEIEGDWYR-----AKQRIYEYLKRTAIVNPHARITFKDPDG-------EILVF 220 (535)
T ss_pred CCeecccc-c----cCCCCCCCEEEEEEECCcChh-----hHHHHHHHHHHHHHhCCCeEEEEEeCCC-------eEEEE
Confidence 2222111 0 123567999999997765542 3678999999999999999999998642 34666
Q ss_pred CCcHHHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHh
Q 007003 300 AGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGK 379 (622)
Q Consensus 300 ~~Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~k 379 (622)
+... +.-| .+|..+..+..|++++.-.+....+-..++.+|..+-.+.-|..+.+ ++++
T Consensus 221 ~R~~---------~~~P-~~p~e~kpHP~gv~~~~l~~m~~~t~~~~l~~fL~~~f~~v~~~~a~-----------~~~~ 279 (535)
T PRK04184 221 PRAT---------DKLP-KPPKEIKPHPHGVDLGTLKRMAARTKRRTLKEFLVEEFSRVGDKTAD-----------EILE 279 (535)
T ss_pred eccc---------ccCC-CCCccCCCCCCccCHHHHHHHHHhcccCCHHHHHHHhhcccCHHHHH-----------HHHH
Confidence 5531 1111 12444455555654432111111111245677777777777644433 3334
Q ss_pred hccCCCC-CCCCCCHHhHhcccEEEEEEeecCCC
Q 007003 380 KSKTVKD-KDISLSGEHVREGLTCIISVRVPNPE 412 (622)
Q Consensus 380 k~~~~k~-~~~~l~~~diregL~~vvsv~i~nP~ 412 (622)
..+...+ ...+++++++..-+-++=.+++..|.
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~pp 313 (535)
T PRK04184 280 KAGLDPNKKPKELTREELERLVEAFKKYKFMAPP 313 (535)
T ss_pred HcCCCCCCChhhCCHHHHHHHHHHHHhccCcCCC
Confidence 4443222 23456777776666666555555553
No 26
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=7.7e-18 Score=178.02 Aligned_cols=261 Identities=15% Similarity=0.221 Sum_probs=175.2
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC-C
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS-S 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~-~ 180 (622)
...+..++.|+|+||+|+ | ++.|.|.+..+| .|+|.|||.|||.+. ++.++. .++++|+...+ .
T Consensus 20 i~~~~~~l~eLi~Na~dA---~-a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~--------l~~~~~-~~~tsk~~~~~~~ 86 (312)
T TIGR00585 20 IERPASVVKELVENSLDA---G-ATRIDVEIEEGGLKLIEVSDNGSGIDKED--------LPLACE-RHATSKIQSFEDL 86 (312)
T ss_pred hhhHHHHHHHHHHHHHHC---C-CCEEEEEEEeCCEEEEEEEecCCCCCHHH--------HHHHhh-CCCcCCCCChhHh
Confidence 367899999999999997 4 789999998766 599999999999875 345554 46778875421 1
Q ss_pred ceeeecCcccccchhhhhccCceEEEEEe--C-CEEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEE------eCcc
Q 007003 181 GYSVSGGLHGVGLSVVNALSESLEVTVWR--D-GMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW------PDKQ 251 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~~V~t~r--~-g~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~------PD~~ 251 (622)
....+.|++|+|+++++++| +++|+|+. + +..|.+. .+|....+.. +...++||+|++. |+++
T Consensus 87 ~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~-~~g~~~~~~~------~~~~~~GTtV~v~~lf~n~p~r~ 158 (312)
T TIGR00585 87 ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQAL-LEGGMIEEIK------PAPRPVGTTVEVRDLFYNLPVRR 158 (312)
T ss_pred hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEE-ECCCcCcccc------cccCCCccEEEEchhhccCchhh
Confidence 33568899999999999999 89999985 3 3567777 4455333221 3456799999999 9999
Q ss_pred ccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeC----CcHHHH-HHHHccCCCCCCceeEEE-e
Q 007003 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA----GGLEEY-VQWLNTDKKPLHDVVGFR-K 325 (622)
Q Consensus 252 iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~----~Gl~dy-v~~l~~~~~~~~~~i~~~-~ 325 (622)
+|......+++.+.++++++|.++|+++|.|.+.. +..+.+. ..+.+. +..+-+... ....+.+. .
T Consensus 159 ~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~-------~~~~~~~~~~~~~~~~~~i~~v~G~~~-~~~l~~~~~~ 230 (312)
T TIGR00585 159 KFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDG-------KKVLQLSTKPNQSLKERRIRSVFGTAV-LSKLFPLLEW 230 (312)
T ss_pred hhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC-------EEEEEEcCCCCCCHHHHHHHHHhChHh-Hhhceeeecc
Confidence 98754456678999999999999999999999864 1233343 237773 655544321 11223333 2
Q ss_pred eccceEEEEEEEecC--CCCCce-eeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEE
Q 007003 326 DVDGITIDLALQWCS--DAYSDT-MLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTC 402 (622)
Q Consensus 326 ~~~~~~veval~~s~--~~~~~~-~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~ 402 (622)
+.+++.++.-+.-.. ...... ++-|||+.+-.. ..|.++|++..+.... + ...-.+
T Consensus 231 ~~~~~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~---------~~l~k~I~~~y~~~~~-~-----------~~~P~~ 289 (312)
T TIGR00585 231 EDGDLQLEGFISEPNVTRSRRSGWQFLFINGRPVEL---------KLLLKAIREVYHEYLP-K-----------GQYPVF 289 (312)
T ss_pred cCCCEEEEEEEcCcccccCCCCcceEEEECCcEecc---------hHHHHHHHHHHHHhcc-C-----------CCCcEE
Confidence 445566653221110 111223 899999988543 2355666554443321 1 113378
Q ss_pred EEEEeecCCCCC
Q 007003 403 IISVRVPNPEFE 414 (622)
Q Consensus 403 vvsv~i~nP~Fe 414 (622)
++++.+|.-.+|
T Consensus 290 vL~i~~p~~~iD 301 (312)
T TIGR00585 290 VLNLEIDPELVD 301 (312)
T ss_pred EEEEEEChHHcc
Confidence 888888765555
No 27
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.72 E-value=5.5e-17 Score=183.40 Aligned_cols=206 Identities=22% Similarity=0.232 Sum_probs=147.1
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhc-CCCCeEEEEEeCCC----eEEEEECCCCccCCCc
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA-GYASNIEVALLADN----SVSVADNGRGIPIDLH 154 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~-g~~~~I~V~i~~dg----~IsV~DnGrGIP~~~h 154 (622)
++.+.++..|+++|++.|+.-+....+|.++++|+|+||+|+... +....|.|.+...| .|+|.|||+|||.+..
T Consensus 10 ~~~~~~S~aEFF~kNk~~lGf~~~~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l 89 (659)
T PRK14867 10 DEFKEHSISEFFRKNKHMLGYSGKLRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFV 89 (659)
T ss_pred HHHHHhHHHHHHhhCCeeeechhHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHH
Confidence 456788999999999999966666789999999999999999753 44568999988543 4999999999999864
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCce-----EEEEEe-CCEEEEEEEe------CCc
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWR-DGMEYHQKYS------RGK 222 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~-----~V~t~r-~g~~y~q~f~------~G~ 222 (622)
+.+|..+|+|+||.. +..+.|++|+|++++.++|+.. +++++. +|..|.+.+. .|.
T Consensus 90 --------~~iFerF~atSK~~~----~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~ 157 (659)
T PRK14867 90 --------PKVFGKMLAGSKMHR----LIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGD 157 (659)
T ss_pred --------hhhhccccccCcccc----eeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCe
Confidence 468999999999963 4678999999999999999764 677764 4555555543 244
Q ss_pred ccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCc
Q 007003 223 PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGG 302 (622)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~G 302 (622)
..... .....++||+|++.-. ..|-.. .+.. +.++++++|++||++.|.|.++... -...+.++..++.
T Consensus 158 I~~~~------~~~~~~~GT~Ie~~V~-dLFynR--~E~~-i~e~l~r~ALanP~i~f~l~~~~~~-~~~~r~~~~lp~~ 226 (659)
T PRK14867 158 IVSHK------VREGFWRGTRVEGEFK-EVTYNR--REQG-PFEYLRRISLSTPHAKITLKDPEET-VVFDRTVDEIPEK 226 (659)
T ss_pred ecccc------cCCCCCCCcEEEEEEe-eceech--hhHH-HHHHHHHHHHhCCCcEEEEEeCCcc-ccCCcceeecCcC
Confidence 33221 1234579999994210 233211 1223 8999999999999999999987321 0011334455554
Q ss_pred HHHHHH
Q 007003 303 LEEYVQ 308 (622)
Q Consensus 303 l~dyv~ 308 (622)
+.+.+-
T Consensus 227 ~~e~~p 232 (659)
T PRK14867 227 PEEMKP 232 (659)
T ss_pred HHHHhh
Confidence 444433
No 28
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.65 E-value=6.3e-16 Score=175.20 Aligned_cols=251 Identities=23% Similarity=0.300 Sum_probs=175.3
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcC-CCCeEEEEEeCCC---eEEEEECCCCccCCCcC
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLADN---SVSVADNGRGIPIDLHP 155 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g-~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~ 155 (622)
++.+.++..|.+.+++.|+..+.+...|..++.|||+||+|+...+ ....|.|.+..++ .|+|.|||.|||.+.
T Consensus 20 ~~~~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~Ed-- 97 (795)
T PRK14868 20 ESQREISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQ-- 97 (795)
T ss_pred hhccccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHH--
Confidence 4778899999999999999888888899999999999999996432 2337888888544 599999999999986
Q ss_pred CCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCc-----eEEEEEeCC--EE--EEEEEeCCc--cc
Q 007003 156 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDG--ME--YHQKYSRGK--PV 224 (622)
Q Consensus 156 ~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~-----~~V~t~r~g--~~--y~q~f~~G~--~~ 224 (622)
++.+|..++.++||... ..+.|++|+||+++-++|+. ++|+++.++ .. |.+....|. |.
T Consensus 98 ------Lp~IFerf~~tSKf~~~----~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~ 167 (795)
T PRK14868 98 ------IPKVFGKLLYGSRFHAR----EQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPE 167 (795)
T ss_pred ------HHHHhhhhccccccccc----ccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccc
Confidence 45789998889998753 35779999999999999964 588887644 23 455555543 32
Q ss_pred c-cceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcH
Q 007003 225 T-TLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 303 (622)
Q Consensus 225 ~-~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl 303 (622)
. .... .....++||+|++. +|... .-...|.++++.+|..||+++|.|.+++ +.+.|+.+-
T Consensus 168 I~~~~~----~~~~~~~GT~IeV~----Lf~N~--pAR~kI~eyl~r~Al~nP~a~f~l~~~~--------~~~~~~r~t 229 (795)
T PRK14868 168 ISVEET----TTWDRPHGTRIELE----MEANM--RARQQLHDYIKHTAVVNPHARIELREPD--------ESLKFERAT 229 (795)
T ss_pred eeccee----cccCCCCceEEEEE----EEccC--chhhhHHHHHHHHHhhCCCeEEEEEECC--------EEEEecccc
Confidence 1 1111 13457899999998 56532 2245699999999999999999999873 357776552
Q ss_pred HHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHH
Q 007003 304 EEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 370 (622)
Q Consensus 304 ~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al 370 (622)
.+. | ..+..+..+.-|+.++--+..........+.+|++.-.+.-|..+.+-+.+.+
T Consensus 230 ~~l---------p-~~p~eIkPHP~Gve~~~L~~m~~~t~~~~l~gFL~~efsRVg~k~a~~ii~~~ 286 (795)
T PRK14868 230 DQL---------P-AETEEIRPHPHGVELGTLLKMLEATDSYSVSGFLQEEFTRVGKKTADSVIDNF 286 (795)
T ss_pred ccc---------c-cCchhccCCCCCcCHHHHHHHHhccCCcEeHHhhhhhhccccHHHHHHHHHHH
Confidence 111 1 01222322333333221111111112246899998888889988888776544
No 29
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=99.54 E-value=5.1e-14 Score=156.62 Aligned_cols=236 Identities=19% Similarity=0.265 Sum_probs=161.8
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCC---CCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK---FGGS 178 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~k---f~~~ 178 (622)
..+|...|+||||||+|+ | |+.|.|.++..| +|+|.|||.||.....+ .++.-|+.+| |.|-
T Consensus 18 I~sl~sAVKELvENSiDA---G-AT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~---------~l~lkh~TSKi~~f~Dl 84 (672)
T KOG1978|consen 18 ITSLVSAVKELVENSIDA---G-ATAIDIKVKDYGSDSIEVSDNGSGISATDFE---------GLALKHTTSKIVSFADL 84 (672)
T ss_pred eccHHHHHHHHHhcCccc---C-CceeeEecCCCCcceEEEecCCCCCCccchh---------hhhhhhhhhcccchhhh
Confidence 367889999999999999 5 999999999877 79999999999987654 3677788887 5554
Q ss_pred CCceeeecCcccccchhhhhccCceEEEEEe-C-CEEEEEEEeC-CcccccceeeecCCCCCCCCCcEEEEE------eC
Q 007003 179 SSGYSVSGGLHGVGLSVVNALSESLEVTVWR-D-GMEYHQKYSR-GKPVTTLTCHVLPVDSKDRQGTRIRFW------PD 249 (622)
Q Consensus 179 ~~~y~~sgG~~GvGls~vNalS~~~~V~t~r-~-g~~y~q~f~~-G~~~~~~~~~~~~~~~~~~~GT~V~F~------PD 249 (622)
...+|.||+|+++++.+|+|. +.|.++. + ....++.|.+ |...... +.+.+.||+|.+. |-
T Consensus 85 --~~l~T~GFRGEALSsLCa~~d-v~I~Trt~~~~vgt~l~~Dh~G~I~~k~-------~~ar~~GTTV~v~~LF~tLPV 154 (672)
T KOG1978|consen 85 --AVLFTLGFRGEALSSLCALGD-VMISTRSHSAKVGTRLVYDHDGHIIQKK-------PVARGRGTTVMVRQLFSTLPV 154 (672)
T ss_pred --hhhhhhhhHHHHHHhhhhccc-eEEEEeeccCccceeEEEccCCceeeec-------cccCCCCCEEEHhhhcccCCC
Confidence 457899999999999999995 5555554 2 3456777765 5554222 4578899999966 55
Q ss_pred c-cccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCc---HHHHHHHHccCCCCC-CceeEEE
Q 007003 250 K-QVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGG---LEEYVQWLNTDKKPL-HDVVGFR 324 (622)
Q Consensus 250 ~-~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~G---l~dyv~~l~~~~~~~-~~~i~~~ 324 (622)
+ .-|..+.+-+++.+..-++.+|.++++++|.....-.. ..+....-.+| .++++...-+..... ..|+.+
T Consensus 155 R~kef~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~---~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~- 230 (672)
T KOG1978|consen 155 RRKEFQRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLA---GKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIF- 230 (672)
T ss_pred chHHhhcchhhhhhhHHhhHHHHHhhcccceeeeeecccc---CCceeEEecCCcchHHHHHHhhhhhhhhhccccccc-
Confidence 5 66766666778899999999999999999988765421 12344444454 555554433221100 011110
Q ss_pred eeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhcc
Q 007003 325 KDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSK 382 (622)
Q Consensus 325 ~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~ 382 (622)
+.-..-.+.....+.++-|+|..+... ..|.+.+|++.+..+
T Consensus 231 -------is~~~~g~~r~s~drqf~fIn~Rpv~~---------~~i~~~inevy~~~~ 272 (672)
T KOG1978|consen 231 -------ISSCHHGCGRSSEDRQFIFINRRPVFP---------SDICRVINEVYKLYN 272 (672)
T ss_pred -------cccccccccccCccceeeeecCccCCH---------HHHHHHHHHHhhhhc
Confidence 000000111223477899999998755 567888888775544
No 30
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=99.33 E-value=3e-12 Score=139.51 Aligned_cols=160 Identities=22% Similarity=0.332 Sum_probs=124.0
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCce-
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY- 182 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y- 182 (622)
-....++|+|+||+|+ .++.|.|.+.++| .+.|.|||.||--+..| +++.-+++||...-++..
T Consensus 27 RP~NAlKEliENSLDA----~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~---------ilCeRftTSKL~kFEDL~~ 93 (694)
T KOG1979|consen 27 RPVNALKELIENSLDA----NSTSIDVLVKDGGLKLLQISDNGSGIRREDLP---------ILCERFTTSKLTKFEDLFS 93 (694)
T ss_pred chHHHHHHHHhccccC----CCceEEEEEecCCeEEEEEecCCCccchhhhH---------HHHHHhhhhhcchhHHHHh
Confidence 3578899999999999 4999999999888 58899999999988765 566668888744322222
Q ss_pred eeecCcccccchhhhhccCceEEEEEeCC--EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEE------eCccccc
Q 007003 183 SVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW------PDKQVFT 254 (622)
Q Consensus 183 ~~sgG~~GvGls~vNalS~~~~V~t~r~g--~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~------PD~~iF~ 254 (622)
..|.||+|++++++.-++ +.+|+|++.+ ..|+..|.+|+...++ ++..+++||.|+.. |.++.=.
T Consensus 94 lsTyGFRGEALASiShVA-~VtV~TK~~~~~cayrasY~DGkm~~~p------KpcAgk~GT~I~vedLFYN~~~Rrkal 166 (694)
T KOG1979|consen 94 LSTYGFRGEALASISHVA-HVTVTTKTAEGKCAYRASYRDGKMIATP------KPCAGKQGTIITVEDLFYNMPTRRKAL 166 (694)
T ss_pred hhhcCccHHHHhhhhhee-EEEEEEeecCceeeeEEEeeccccccCC------CCccCCCceEEEehHhhccCHHHHHHh
Confidence 568899999999999997 8888888643 4699999999987443 25678999999977 3332211
Q ss_pred cccccCHHHHHHHHHHHhhhCCCcEEEEeeC
Q 007003 255 TAIQFDHNTIAGRIRELAFLNPKLTIALRKE 285 (622)
Q Consensus 255 ~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~ 285 (622)
.+..-++..|...+..+|.-||++.|.+...
T Consensus 167 ~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~ 197 (694)
T KOG1979|consen 167 RNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQ 197 (694)
T ss_pred cCcHHHHHHHHHHHHHHheeCCCcceEEeec
Confidence 1222346689999999999999999999874
No 31
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=99.12 E-value=2.9e-11 Score=106.79 Aligned_cols=97 Identities=22% Similarity=0.327 Sum_probs=86.3
Q ss_pred eEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHH-HhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEee
Q 007003 500 EIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAA-MYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILT 578 (622)
Q Consensus 500 eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~k-i~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImT 578 (622)
|||||||+|+.....++.+...+.++|+.|+++|....+... ..+++.++.|.+.+ .+|+.|||+|
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~~iiiat 67 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLL-------------KKADEIIIAT 67 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHH-------------HSCSEEEEEC
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHh-------------hhccEeeecC
Confidence 699999999999888888877799999999999999987665 88889999999887 4689999999
Q ss_pred CCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEE
Q 007003 579 DADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 611 (622)
Q Consensus 579 DaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~ 611 (622)
|+|.+|.||...++.++...+|.+ .+++++-
T Consensus 68 D~D~EGe~Ia~~i~~~~~~~~~~~--~~R~~~~ 98 (100)
T PF01751_consen 68 DPDREGELIAWEIIELLGKNNPKL--IKRVWFS 98 (100)
T ss_dssp -SSHHHHHHHHHHHHHHHHHSHHH--TTEEEEE
T ss_pred CCChHHHHHHHHHHHHHhHhCCCc--CCEEEEe
Confidence 999999999999999999999999 6777764
No 32
>PRK05218 heat shock protein 90; Provisional
Probab=99.02 E-value=3.3e-08 Score=113.60 Aligned_cols=157 Identities=20% Similarity=0.268 Sum_probs=101.2
Q ss_pred hHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeCCC-eEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLADN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~dg-~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
.-.++|+|-||.|+..+ .....|.|.++.+| .|+|.|||.||..+. ++..|+++-++
T Consensus 28 ~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~ee--------l~~~l~~ia~S 99 (613)
T PRK05218 28 EIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREE--------VIENLGTIAKS 99 (613)
T ss_pred hHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHH--------HHHHHHhhccc
Confidence 55789999999999641 12347888888655 799999999999875 23344442222
Q ss_pred C------CCCCCCCceeeecCcccccchhhhhccCceEEEEEeCC---EEEEEEEeCCcccccceeeecCCCCCCCCCcE
Q 007003 173 G------KFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG---MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 243 (622)
Q Consensus 173 ~------kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g---~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~ 243 (622)
| ++.+....-.-.-|.+|+|..++=+++++++|.|+..+ ..|..+...|... ...+ .....+||+
T Consensus 100 g~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~-~i~~-----~~~~~~GT~ 173 (613)
T PRK05218 100 GTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY-TIEE-----IEKEERGTE 173 (613)
T ss_pred cchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee-EEeE-----CCCCCCCcE
Confidence 2 22111001123569999999999999999999998755 3566666654432 2211 112379999
Q ss_pred EEEEeCccccccccccCHHHHHHHHHHHh--hhCCCcEEEEee
Q 007003 244 IRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRK 284 (622)
Q Consensus 244 V~F~PD~~iF~~~~~~d~~~i~~rl~elA--~lnpgl~I~l~d 284 (622)
|++.+..+- ..-.+...|.+.++.+| .-+| |++++
T Consensus 174 I~l~Lk~~~---~e~~e~~~i~~li~kys~~l~~P---I~~~~ 210 (613)
T PRK05218 174 ITLHLKEDE---DEFLDEWRIRSIIKKYSDFIPVP---IKLEK 210 (613)
T ss_pred EEEEECcch---hhhcCHHHHHHHHHHHHhcCCCC---EEEec
Confidence 998744331 11146678899999999 3345 55543
No 33
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.81 E-value=4e-09 Score=117.18 Aligned_cols=174 Identities=22% Similarity=0.312 Sum_probs=123.5
Q ss_pred hhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhcc
Q 007003 92 RKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLH 170 (622)
Q Consensus 92 r~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lh 170 (622)
+.|.|.- ...|.++|.||+-||+|+ +|+.|.|.++- .-+|.|.|||.|+.-+. ++. ++.-+
T Consensus 12 ~lrSg~~-----~~sla~~VeElv~NSiDA----~At~V~v~V~~~t~sv~ViDdG~G~~rdD--------l~~-lg~ry 73 (1142)
T KOG1977|consen 12 KLRSGLA-----ISSLAQCVEELVLNSIDA----EATCVAVRVNMETFSVQVIDDGFGMGRDD--------LEK-LGNRY 73 (1142)
T ss_pred HHhccch-----HHHHHHHHHHHHhhcccc----CceEEEEEecCceeEEEEEecCCCccHHH--------HHH-HHhhh
Confidence 4455554 346789999999999999 59999999984 55899999999998875 333 45557
Q ss_pred CCCCCCCCCCc-eeeecCcccccchhhhhccCceEEEEEeCCE--EEE-EEEeCCcccccceeeecCCCCCCCCCcEEEE
Q 007003 171 AGGKFGGSSSG-YSVSGGLHGVGLSVVNALSESLEVTVWRDGM--EYH-QKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246 (622)
Q Consensus 171 ag~kf~~~~~~-y~~sgG~~GvGls~vNalS~~~~V~t~r~g~--~y~-q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F 246 (622)
+++||...++. --.+-|++|.+++.+.-+| .++|.++..+. .|. -.|..|.....+.. . -.....||+|++
T Consensus 74 ~TSK~h~~ndl~~~~tyGfRGeALasIsd~s-~l~v~skkk~r~~~~~~kk~~~gs~~~~l~i-D---~~R~~sGTtVtV 148 (1142)
T KOG1977|consen 74 FTSKCHSVNDLENPRTYGFRGEALASISDMS-SLVVISKKKNRTMKTFVKKFQSGSALKALEI-D---VTRASSGTTVTV 148 (1142)
T ss_pred hhhhceeccccccccccccchhhhhhhhhhh-hhhhhhhhcCCchhHHHHHHhccccceeccc-c---cccccCCcEEEe
Confidence 88888743222 2457899999999999998 45555554332 222 23444554333321 1 234568999997
Q ss_pred E------eCccccc-cccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCC
Q 007003 247 W------PDKQVFT-TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSD 288 (622)
Q Consensus 247 ~------PD~~iF~-~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~ 288 (622)
. |-+.+.. ++....++.|++++.++|..+|.+.|++.+...+
T Consensus 149 ~dlfY~lPVRRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~ 197 (1142)
T KOG1977|consen 149 YDLFYQLPVRRRLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSG 197 (1142)
T ss_pred HHhhhcchhhhhhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCc
Confidence 6 7777654 2334457899999999999999999999887644
No 34
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.80 E-value=4e-09 Score=93.80 Aligned_cols=87 Identities=31% Similarity=0.555 Sum_probs=66.4
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
+..|.+++.|+++||+|++..+ ..|.|.+..+ + .|+|+|||.|||.+. ++.+|....++.+ +
T Consensus 3 ~~~l~~il~~ll~Na~~~~~~~--~~I~i~~~~~~~~~~i~i~d~G~gi~~~~--------l~~~~~~~~~~~~-~---- 67 (111)
T PF02518_consen 3 PDRLRQILSELLDNAIKHSPEG--GKIDITIEEDDDHLSIEISDNGVGIPPEE--------LEKLFEPFFTSDK-S---- 67 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--SEEEEEEEEETTEEEEEEEESSSSTTHHH--------HHHHCSTTSHSSS-S----
T ss_pred HHHHHHHHHHHHHHHHHHhcCC--CEEEEEEEEecCeEEEEEEeccccccccc--------cccchhhcccccc-c----
Confidence 4578999999999999998776 7899988864 3 799999999999964 4566665544443 1
Q ss_pred ceeeecCcccccchhhhhccCceEEEE
Q 007003 181 GYSVSGGLHGVGLSVVNALSESLEVTV 207 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~~V~t 207 (622)
.. ..+-+|+|+.+++.+++.+..++
T Consensus 68 ~~--~~~g~GlGL~~~~~~~~~~~g~l 92 (111)
T PF02518_consen 68 ET--SISGHGLGLYIVKQIAERHGGEL 92 (111)
T ss_dssp SG--GSSSSSHHHHHHHHHHHHTTEEE
T ss_pred cc--ccCCCChHHHHHHHHHHHCCCEE
Confidence 11 22339999999999998876553
No 35
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.80 E-value=1.4e-09 Score=101.54 Aligned_cols=97 Identities=26% Similarity=0.403 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC----CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCce
Q 007003 107 LHHLVYEILDNAVDEAQAGYASNIEVALLAD----NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~g~~~~I~V~i~~d----g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y 182 (622)
+..++.|+|+||+|+ .++.|.|.++.+ ..|.|.|||.|||.+. ++.+| .+..+++... .-
T Consensus 3 ~~~al~ElI~Ns~DA----~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~--------l~~~~-~~g~s~k~~~---~~ 66 (137)
T PF13589_consen 3 PEDALRELIDNSIDA----GATNIKISIDEDKKGERYIVIEDNGEGMSRED--------LESFF-RIGRSSKKSE---KD 66 (137)
T ss_dssp CTHHHHHHHHHHHHH----HHHHEEEEEEEETTTTTEEEEEESSS---HHH--------HHHHT-TCHHTHHHHH---HH
T ss_pred HHHHHHHHHHHHHHc----cCCEEEEEEEcCCCCCcEEEEEECCcCCCHHH--------HHHhc-cccCCCCCch---hh
Confidence 368999999999998 378899999964 4899999999999975 33333 3444444311 11
Q ss_pred eeecCccccc-chhhhhccCceEEEEEeCCE--EEEEEEe
Q 007003 183 SVSGGLHGVG-LSVVNALSESLEVTVWRDGM--EYHQKYS 219 (622)
Q Consensus 183 ~~sgG~~GvG-ls~vNalS~~~~V~t~r~g~--~y~q~f~ 219 (622)
..+-|.+|+| ..++..++..++|.++..+. .|.+.+.
T Consensus 67 ~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 67 RQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred hhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 3468999999 44567788999999997763 4444443
No 36
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=98.78 E-value=1.6e-08 Score=88.98 Aligned_cols=100 Identities=23% Similarity=0.437 Sum_probs=77.9
Q ss_pred HHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecCC--CCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhc
Q 007003 304 EEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSD--AYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKS 381 (622)
Q Consensus 304 ~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~--~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~ 381 (622)
++++..+.+.+. ....+.+..+..++.+++++.|... ...+.+++|||++++..||+|..++.+++.+.++
T Consensus 2 ~~~i~~~~g~~~-~~~~~~~~~~~~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~------ 74 (107)
T cd00329 2 KDRLAEILGDKV-ADKLIYVEGESDGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALN------ 74 (107)
T ss_pred HhHHHHHhCHHh-HhhcEEEeccCCCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhc------
Confidence 456666665433 2234556656667889999988732 2457899999999998899999999999988775
Q ss_pred cCCCCCCCCCCHHhHhcccEEEEEEeecC--CCCC-Ccccccc
Q 007003 382 KTVKDKDISLSGEHVREGLTCIISVRVPN--PEFE-GQTKTRL 421 (622)
Q Consensus 382 ~~~k~~~~~l~~~diregL~~vvsv~i~n--P~Fe-gQTK~kL 421 (622)
++++.+...++|++++++ |.|. +|||+++
T Consensus 75 -----------~~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v 106 (107)
T cd00329 75 -----------GDDVRRYPVAVLSLKIPPSLVDVNVHPTKEEV 106 (107)
T ss_pred -----------ccCCCCCCEEEEEEEeChHHeeeCCCCCcccc
Confidence 344677889999999999 9999 9999976
No 37
>PRK14083 HSP90 family protein; Provisional
Probab=98.54 E-value=1.4e-06 Score=99.66 Aligned_cols=159 Identities=21% Similarity=0.270 Sum_probs=100.5
Q ss_pred hhHHHHHHHHhhHHhhhc--C----CCCeEEEEE-eC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCC
Q 007003 107 LHHLVYEILDNAVDEAQA--G----YASNIEVAL-LA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~--g----~~~~I~V~i-~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~ 178 (622)
....+.|+|-||.|+... . ....|.|++ +. ...++|.|||.||+.+.. +-.|+.+-.+++-+..
T Consensus 24 ~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel--------~~~l~~ig~S~k~~~~ 95 (601)
T PRK14083 24 PRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEV--------HEFLATIGRSSKRDEN 95 (601)
T ss_pred cHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHH--------HHHHhhhccchhhhhh
Confidence 467889999999999753 1 124788988 54 458999999999998752 3345555555553311
Q ss_pred -CCceeeecCcccccchhhhhccCceEEEEEeCC--EEEEEEEe-CCcccccceeeecCCCCCCCCCcEEEEEe--Cccc
Q 007003 179 -SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYS-RGKPVTTLTCHVLPVDSKDRQGTRIRFWP--DKQV 252 (622)
Q Consensus 179 -~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g--~~y~q~f~-~G~~~~~~~~~~~~~~~~~~~GT~V~F~P--D~~i 252 (622)
...-...-|..|+|..++=++++..+|.|+..+ ..|..+-. +|.. .... .+ .....+||+|+..+ |..-
T Consensus 96 ~~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y--~i~~--~~-~~~~~~GT~I~L~l~~d~~~ 170 (601)
T PRK14083 96 LGFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTY--SVRK--LE-TERAEPGTTVYLRPRPDAEE 170 (601)
T ss_pred hcccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCce--EEEe--CC-CCCCCCCCEEEEEecCchhh
Confidence 000112459999999999999999999998753 33333222 2322 2211 11 23457999999885 3333
Q ss_pred cccccccCHHHHHHHHHHHhhhCCCcEEEEee
Q 007003 253 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRK 284 (622)
Q Consensus 253 F~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d 284 (622)
| ++.+.+.+-++.++-.-| ..|++++
T Consensus 171 ~-----~~~~~i~~li~~ys~~i~-~pI~l~~ 196 (601)
T PRK14083 171 W-----LERETVEELAKKYGSLLP-VPIRVEG 196 (601)
T ss_pred h-----ccHHHHHHHHHHHhccCC-CCcccCC
Confidence 3 355667776666654332 5566665
No 38
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.8e-05 Score=89.33 Aligned_cols=130 Identities=24% Similarity=0.346 Sum_probs=82.5
Q ss_pred HHHHHHhhHHhhhc-----------CC---CCeEEEEEeCC-CeEEEEECCCCccCCCcCC----CCcchHHHhhhhccC
Q 007003 111 VYEILDNAVDEAQA-----------GY---ASNIEVALLAD-NSVSVADNGRGIPIDLHPA----TNKSALETVLTVLHA 171 (622)
Q Consensus 111 v~EildNaiDe~~~-----------g~---~~~I~V~i~~d-g~IsV~DnGrGIP~~~h~~----~g~~~~e~v~t~lha 171 (622)
++|+|.||.|++.. +. -.+|.|..+.+ ..++|.|||.||.-+.... =.++.-...+..++.
T Consensus 32 LRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~ 111 (623)
T COG0326 32 LRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESLSE 111 (623)
T ss_pred HHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHhcc
Confidence 58999999999852 11 24677888865 5899999999999875211 011111122222222
Q ss_pred CCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCC--EEEEEEEe-CCcccccceeeecCCCCCCC-CCcEEEEE
Q 007003 172 GGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYS-RGKPVTTLTCHVLPVDSKDR-QGTRIRFW 247 (622)
Q Consensus 172 g~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g--~~y~q~f~-~G~~~~~~~~~~~~~~~~~~-~GT~V~F~ 247 (622)
+. . + ..--|+.|||.-++=++|++.+|.|+..| ..| .|+ .|...-.+... ...+ +||+|+..
T Consensus 112 ~~--~-~----~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~--~W~S~g~g~ytv~~~-----~~~~~~GT~I~L~ 177 (623)
T COG0326 112 DQ--K-D----SDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAY--HWESDGEGEYTVEDI-----DKEPRRGTEITLH 177 (623)
T ss_pred cc--c-c----ccccccccchhhheeeeeeeEEEEeccCCCCcce--EEEEcCCCceEEeec-----cCCCCCCcEEEEE
Confidence 21 1 1 12359999999999999999999998766 445 554 35554444332 2334 69999977
Q ss_pred --eCccccc
Q 007003 248 --PDKQVFT 254 (622)
Q Consensus 248 --PD~~iF~ 254 (622)
||-.-|.
T Consensus 178 Lk~~e~efl 186 (623)
T COG0326 178 LKEEEDEFL 186 (623)
T ss_pred ECCchHHHh
Confidence 4444454
No 39
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=98.19 E-value=8.4e-06 Score=94.53 Aligned_cols=154 Identities=23% Similarity=0.336 Sum_probs=92.2
Q ss_pred HHHHHHHhhHHhhhc------------CCCCeEEEE--EeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCC
Q 007003 110 LVYEILDNAVDEAQA------------GYASNIEVA--LLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 174 (622)
Q Consensus 110 lv~EildNaiDe~~~------------g~~~~I~V~--i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~k 174 (622)
.++|+|.||.|+... +....+.|. .+.+ ..++|.|||.||+.+... +-+.+-.+.|++
T Consensus 29 flRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~-------~~LgtIa~SGt~ 101 (701)
T PTZ00272 29 FLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLV-------NNLGTIARSGTK 101 (701)
T ss_pred hHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHH-------HHhhhhhhcchH
Confidence 468999999999642 112344444 4433 489999999999987521 122222233333
Q ss_pred -CC----CCCCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEEe
Q 007003 175 -FG----GSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 248 (622)
Q Consensus 175 -f~----~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~P 248 (622)
|- .. .-....|+.|+|.-++=.+++..+|+|+..+ ..|..+...+.. -..... + .....+||+|+..+
T Consensus 102 ~f~~~~~~~--~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~-y~i~~~--~-~~~~~~GT~I~L~L 175 (701)
T PTZ00272 102 AFMEALEAG--GDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGT-FTITST--P-ESDMKRGTRITLHL 175 (701)
T ss_pred HHHHHhhcc--CCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCc-EEEEeC--C-CCCCCCCCEEEEEE
Confidence 21 11 1134679999999999999999999998643 455555543211 122111 1 22347999999774
Q ss_pred --CccccccccccCHHHHHHHHHHHhhhCCCcEEEE
Q 007003 249 --DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 282 (622)
Q Consensus 249 --D~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l 282 (622)
|..-| ++...|.+.++.++---| .-|++
T Consensus 176 k~d~~ef-----~~~~~i~~li~kYs~fi~-~PI~l 205 (701)
T PTZ00272 176 KEDQMEY-----LEPRRLKELIKKHSEFIG-YDIEL 205 (701)
T ss_pred CCchHHh-----ccHHHHHHHHHHhccccC-cceEE
Confidence 43344 355677777777774322 33555
No 40
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.84 E-value=6e-05 Score=63.45 Aligned_cols=79 Identities=29% Similarity=0.471 Sum_probs=53.8
Q ss_pred hhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCcee
Q 007003 107 LHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYS 183 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~ 183 (622)
|.+++.|+|+||+++... ....|.|.+..++ .|.|.|+|.|+|....+ ..+... . +. ...
T Consensus 1 l~~~~~~ll~Na~~~~~~-~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~--------~~~~~~-~--~~-----~~~ 63 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPE-GGGRITISVERDGDHLEIRVEDNGPGIPEEDLE--------RIFERF-S--DG-----SRS 63 (103)
T ss_pred CHHHHHHHHHHHHHhCcC-CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHH--------HHhhhh-h--cC-----CCC
Confidence 467999999999999543 1356777777543 68899999999876432 122221 1 11 223
Q ss_pred eecCcccccchhhhhccCc
Q 007003 184 VSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 184 ~sgG~~GvGls~vNalS~~ 202 (622)
...+.+|.|+++++.++..
T Consensus 64 ~~~~~~g~gl~~~~~~~~~ 82 (103)
T cd00075 64 RKGGGTGLGLSIVKKLVEL 82 (103)
T ss_pred CCCCccccCHHHHHHHHHH
Confidence 3456789999999999873
No 41
>PTZ00130 heat shock protein 90; Provisional
Probab=97.81 E-value=0.00011 Score=85.95 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=92.9
Q ss_pred HHHHHHhhHHhhhc------------CC--CCeEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCC-
Q 007003 111 VYEILDNAVDEAQA------------GY--ASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK- 174 (622)
Q Consensus 111 v~EildNaiDe~~~------------g~--~~~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~k- 174 (622)
++|||.||.|+... +. .-.|.|..+. .+.++|.|||.||.-+.. .+-+.|-.+.|++
T Consensus 93 LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl-------~~nLgTIA~Sgt~~ 165 (814)
T PTZ00130 93 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDL-------INNLGTIAKSGTSN 165 (814)
T ss_pred eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHH-------HHHhhhhcccccHH
Confidence 58999999999741 11 2256666654 458999999999998753 1222232232322
Q ss_pred C----CCCCCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeC
Q 007003 175 F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 249 (622)
Q Consensus 175 f----~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD 249 (622)
| .... .-..--|+.|||.-++=.++...+|+|+..+ ..|..+.. |.-.-.+.. .+.+....+||+|+..+.
T Consensus 166 F~~~l~~~~-~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~-g~g~y~I~e--~~~~~~~~rGT~I~LhLk 241 (814)
T PTZ00130 166 FLEAISKSG-GDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWEST-ADAKFTIYK--DPRGSTLKRGTRISLHLK 241 (814)
T ss_pred HHHHhhccC-CCcccccccccchhheeeecCEEEEEEcCCCCceEEEEEC-CCCcEEEEE--CCCCCCCCCCcEEEEEEC
Confidence 3 1100 1123569999999999999999999998644 44554433 221112211 111223479999998853
Q ss_pred --ccccccccccCHHHHHHHHHHHhhhCCCcEEEEe
Q 007003 250 --KQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 283 (622)
Q Consensus 250 --~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~ 283 (622)
..-| ++..+|.+.++.++-.-+ .-|++.
T Consensus 242 ed~~ef-----l~~~~ik~likkYS~fI~-~PI~l~ 271 (814)
T PTZ00130 242 EDATNL-----MNDKKLVDLISKYSQFIQ-YPIYLL 271 (814)
T ss_pred Cchhhh-----ccHHHHHHHHHHhhccCC-CCEEEc
Confidence 3333 456678888887774322 335554
No 42
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.35 E-value=0.00071 Score=57.77 Aligned_cols=83 Identities=31% Similarity=0.440 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|..++.|+++||+++... ...|.|.+..+ + .+.|.|+|+|++.+.. +.++...+....
T Consensus 4 ~~l~~~~~~l~~n~~~~~~~--~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~--------~~~~~~~~~~~~------- 66 (111)
T smart00387 4 DRLRQVLSNLLDNAIKYTPE--GGRITVTLERDGDHLEITVEDNGPGIPPEDL--------EKIFEPFFRTDG------- 66 (111)
T ss_pred HHHHHHHHHHHHHHHhcCCC--CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHH--------HHHhcCeEECCC-------
Confidence 45788999999999998543 25677777743 3 6899999999987532 233333221111
Q ss_pred eeeecCcccccchhhhhccCceE
Q 007003 182 YSVSGGLHGVGLSVVNALSESLE 204 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~~~ 204 (622)
.....+.+|+|+++++.+++.+.
T Consensus 67 ~~~~~~~~g~gl~~~~~~~~~~~ 89 (111)
T smart00387 67 RSRKIGGTGLGLSIVKKLVELHG 89 (111)
T ss_pred CCCCCCcccccHHHHHHHHHHcC
Confidence 11234568999999999987763
No 43
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.29 E-value=0.00035 Score=77.83 Aligned_cols=78 Identities=32% Similarity=0.530 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHhhHHhhhcCC-CCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 106 GLHHLVYEILDNAVDEAQAGY-ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~-~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
-+..++--|+|||+|+..++. -..|.+.+..+| .|+|.|||+|||.+.. +.+|.+ .
T Consensus 427 ~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~--------~~iFe~------------G 486 (537)
T COG3290 427 DLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVR--------DKIFEK------------G 486 (537)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHH--------HHHHhc------------C
Confidence 466788999999999998643 478999999765 6999999999999852 345543 3
Q ss_pred eeeec-CcccccchhhhhccCce
Q 007003 182 YSVSG-GLHGVGLSVVNALSESL 203 (622)
Q Consensus 182 y~~sg-G~~GvGls~vNalS~~~ 203 (622)
|.+-+ +-||+|+.+|-.+-+++
T Consensus 487 ~Stk~~~~rGiGL~Lvkq~V~~~ 509 (537)
T COG3290 487 VSTKNTGGRGIGLYLVKQLVERL 509 (537)
T ss_pred ccccCCCCCchhHHHHHHHHHHc
Confidence 32333 67999999999886655
No 44
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=97.25 E-value=0.0014 Score=59.47 Aligned_cols=90 Identities=27% Similarity=0.316 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHhhHHhhhcCCC-CeEEEEEeC--CC-eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 106 GLHHLVYEILDNAVDEAQAGYA-SNIEVALLA--DN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~-~~I~V~i~~--dg-~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
-+.-++.|++.||+.++..+.. ..|.|.+.. ++ .|+|+|+|.|+|....+..... ..
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~------------~~------- 91 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPW------------EP------- 91 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccc------------cC-------
Confidence 4667899999999999765432 567777664 33 6999999999887654321110 00
Q ss_pred eeeecCcccccchhhhhccCceEEEEEeCCEEEEEE
Q 007003 182 YSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQK 217 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~ 217 (622)
......|.|+.++..++..+.+ ...+|+..+++
T Consensus 92 --~~~~~~G~Gl~li~~l~D~~~~-~~~~gn~v~l~ 124 (125)
T PF13581_consen 92 --DSLREGGRGLFLIRSLMDEVDY-REDGGNTVTLR 124 (125)
T ss_pred --CCCCCCCcCHHHHHHHHcEEEE-ECCCeEEEEEE
Confidence 1234569999999999999988 33344544443
No 45
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.19 E-value=0.001 Score=74.71 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCce
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y 182 (622)
-|..++.++++||+++........|.|++.. ++ .|+|.|||.|||.+. .+-+|.... .
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~--------~~~iF~~~~------~----- 493 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDE--------IDAIFDKGY------S----- 493 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHH--------HHHHHhCCC------c-----
Confidence 4788999999999998654445678888874 33 589999999999864 234565321 1
Q ss_pred eeecCcccccchhhhhccC
Q 007003 183 SVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 183 ~~sgG~~GvGls~vNalS~ 201 (622)
..++-+|+|++.|..+.+
T Consensus 494 -~~~~g~GlGL~iv~~iv~ 511 (542)
T PRK11086 494 -TKGSNRGVGLYLVKQSVE 511 (542)
T ss_pred -cCCCCCcCcHHHHHHHHH
Confidence 112347999999888754
No 46
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.16 E-value=0.0015 Score=71.74 Aligned_cols=81 Identities=27% Similarity=0.403 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHhhHHhhhcCC--CCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 106 GLHHLVYEILDNAVDEAQAGY--ASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~--~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
-|..++.+++.||+++...+. ...|.|.... ++ .++|.|||.|||.+.. +-+|....+ +|-.
T Consensus 387 ~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~--------~~iF~~f~~-~~~~---- 453 (494)
T TIGR02938 387 QLRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLR--------YKVFEPFFT-TKGG---- 453 (494)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHH--------HHhcCCCcc-cCCC----
Confidence 378999999999999875542 2356666654 33 6999999999998753 345654322 1110
Q ss_pred ceeeecCcccccchhhhhccCce
Q 007003 181 GYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~ 203 (622)
. ..| .|+||++|.-+.+.+
T Consensus 454 ~---~~G-~GlGL~i~~~iv~~~ 472 (494)
T TIGR02938 454 S---RKH-IGMGLSVAQEIVADH 472 (494)
T ss_pred C---CCC-CcccHHHHHHHHHHc
Confidence 1 123 799999999886543
No 47
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.12 E-value=0.0013 Score=72.01 Aligned_cols=82 Identities=24% Similarity=0.369 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|..++.++++||+++... ...|.|.+..++ .|+|.|||.|||.+.. +-+|...+.+.+ .
T Consensus 352 ~~l~~~~~nll~Nai~~~~~--~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~--------~~~~~~~~~~~~------~ 415 (457)
T TIGR01386 352 QMFRRAISNLLSNALRHTPD--GGTITVRIERRSDEVRVSVSNPGPGIPPEHL--------SRLFDRFYRVDP------A 415 (457)
T ss_pred HHHHHHHHHHHHHHHHcCCC--CceEEEEEEecCCEEEEEEEeCCCCCCHHHH--------HHhccccccCCc------c
Confidence 44777888888888887432 257888888654 6999999999998642 234544332211 0
Q ss_pred eeeecCcccccchhhhhccCc
Q 007003 182 YSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~ 202 (622)
.....+-+|+|++.+.-+.+.
T Consensus 416 ~~~~~~g~GlGL~i~~~~~~~ 436 (457)
T TIGR01386 416 RSNSGEGTGLGLAIVRSIMEA 436 (457)
T ss_pred cCCCCCCccccHHHHHHHHHH
Confidence 001123389999998887654
No 48
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=97.10 E-value=0.0018 Score=62.06 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHhhHHhhhcCC-CCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGY-ASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~-~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
..+.-++.|++.||+.++..+. ...|.|.+.. ++ .|.|+|+|.|++.+..+. .+.. +...+.
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~--------~~~p-~~~~~~----- 106 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKS--------KLGP-YDISKP----- 106 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhcc--------ccCC-CCCCCc-----
Confidence 4577799999999999976542 3467777763 33 699999999998654321 1110 000110
Q ss_pred ceeeecCcccccchhhhhccCceEEEEEeCCEEE
Q 007003 181 GYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEY 214 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y 214 (622)
. ....-.|.|+.++..++..+++.. .+|...
T Consensus 107 ~--~~~~~~G~GL~li~~l~d~v~~~~-~~G~~v 137 (161)
T PRK04069 107 I--EDLREGGLGLFLIETLMDDVTVYK-DSGVTV 137 (161)
T ss_pred c--cccCCCceeHHHHHHHHHhEEEEc-CCCcEE
Confidence 0 011125899999999999877764 345443
No 49
>PRK10364 sensor protein ZraS; Provisional
Probab=97.07 E-value=0.0012 Score=73.10 Aligned_cols=76 Identities=28% Similarity=0.441 Sum_probs=53.3
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|..++..+|+||+++... ...|.|.+..++ .|+|.|||.|||.+. .+-+|...+. .
T Consensus 347 ~~l~~il~NLl~NA~k~~~~--~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~~~~------~--- 407 (457)
T PRK10364 347 DRLTQVLLNLYLNAIQAIGQ--HGVISVTASESGAGVKISVTDSGKGIAADQ--------LEAIFTPYFT------T--- 407 (457)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCeEEEEEEEeCCeEEEEEEECCCCCCHHH--------HHHHhCcccc------C---
Confidence 45788899999999998533 457888877433 699999999999874 3345554211 1
Q ss_pred eeeecCcccccchhhhhccCc
Q 007003 182 YSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~ 202 (622)
..+-+|+|++.|..+.+.
T Consensus 408 ---k~~g~GlGL~iv~~~v~~ 425 (457)
T PRK10364 408 ---KAEGTGLGLAVVHNIVEQ 425 (457)
T ss_pred ---CCCCCcccHHHHHHHHHH
Confidence 112379999999988754
No 50
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.98 E-value=0.0041 Score=57.35 Aligned_cols=82 Identities=20% Similarity=0.258 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHhhHHhhhc-CCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQA-GYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~-g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
..+..++.|++.||+.+... .....|.|++.. ++ .++|.|||.|||.. +.+|.....+ .
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~~----------~~~~~~~~~~-----~-- 100 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIENL----------EEAREPLYTS-----K-- 100 (137)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcCch----------hHhhCCCccc-----C--
Confidence 46788999999999976433 124578888774 33 58999999999832 1122221111 0
Q ss_pred ceeeecCcccccchhhhhccCceEEE
Q 007003 181 GYSVSGGLHGVGLSVVNALSESLEVT 206 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~~V~ 206 (622)
. ..+-.|.|+++++.+...++++
T Consensus 101 ~---~~~~~GlGL~lv~~~~~~l~~~ 123 (137)
T TIGR01925 101 P---ELERSGMGFTVMENFMDDVSVD 123 (137)
T ss_pred C---CCCCCcccHHHHHHhCCcEEEE
Confidence 0 1234799999998877544443
No 51
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.96 E-value=0.0021 Score=70.64 Aligned_cols=83 Identities=25% Similarity=0.296 Sum_probs=54.2
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
..-|.+++..+|+||+++...| ..|.|.+..+ + .++|.|||.|||.+.. +-+|.......+-
T Consensus 315 ~~~l~~vl~NLl~NAik~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~--------~~if~~f~~~~~~----- 379 (430)
T PRK11006 315 EDQLRSAISNLVYNAVNHTPEG--THITVRWQRVPQGAEFSVEDNGPGIAPEHI--------PRLTERFYRVDKA----- 379 (430)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEEcCCEEEEEEEEcCCCCCHHHH--------HHhccCcccccCC-----
Confidence 3568899999999999985433 5677776643 2 6999999999998753 2344433222111
Q ss_pred ceeeecCcccccchhhhhccCc
Q 007003 181 GYSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~ 202 (622)
.....|-.|+|+++|..+.+.
T Consensus 380 -~~~~~~G~GLGL~ivk~iv~~ 400 (430)
T PRK11006 380 -RSRQTGGSGLGLAIVKHALSH 400 (430)
T ss_pred -CCCCCCCCchHHHHHHHHHHH
Confidence 011123379999998877643
No 52
>PRK10604 sensor protein RstB; Provisional
Probab=96.92 E-value=0.002 Score=71.09 Aligned_cols=82 Identities=28% Similarity=0.426 Sum_probs=52.6
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC--CC-eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA--DN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~--dg-~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
..-+..++..+|+||+.+. ...|.|.+.. +. .|+|+|||.|||.+. .+-+|.....+.+ .
T Consensus 317 ~~~l~~vl~NLl~NAik~~----~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~--------~~~if~~f~r~~~---~-- 379 (433)
T PRK10604 317 MRLMERVLDNLLNNALRYA----HSRVRVSLLLDGNQACLIVEDDGPGIPPEE--------RERVFEPFVRLDP---S-- 379 (433)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCeEEEEEEEECCEEEEEEEEcCCCCCHHH--------HhhcCCCCccCCC---C--
Confidence 3457788888999988873 3567777663 33 699999999999874 3345544322211 0
Q ss_pred ceeeecCcccccchhhhhccCce
Q 007003 181 GYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~ 203 (622)
.-..+ |-+|+|++.|.-+.+++
T Consensus 380 ~~~~~-~g~GLGL~ivk~i~~~~ 401 (433)
T PRK10604 380 RDRAT-GGCGLGLAIVHSIALAM 401 (433)
T ss_pred CCCCC-CCccchHHHHHHHHHHC
Confidence 11112 34799999988776544
No 53
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.90 E-value=0.006 Score=61.83 Aligned_cols=94 Identities=28% Similarity=0.453 Sum_probs=64.3
Q ss_pred CCeeeccCCCChhhHHHHHHHHhhHHhhhcC-CCCeEEEEEe--CCC---eEEEEECCCCccCCCcCCCCcchHHHhhhh
Q 007003 95 PAMYIGSTGPRGLHHLVYEILDNAVDEAQAG-YASNIEVALL--ADN---SVSVADNGRGIPIDLHPATNKSALETVLTV 168 (622)
Q Consensus 95 P~mYiGs~~~~gL~~lv~EildNaiDe~~~g-~~~~I~V~i~--~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~ 168 (622)
|..+++....-.|.-+|.|++.||+-++.-+ ....|.|++. .++ ...|||||.|+|++...
T Consensus 111 ~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~~~------------- 177 (221)
T COG3920 111 PNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEAPL------------- 177 (221)
T ss_pred CceEECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCCCC-------------
Confidence 3355555556789999999999999996532 4567777776 344 58999999999987420
Q ss_pred ccCCCCCCCCCCceeeecCcccccchhhhhcc-Cce--EEEEE-eCCEEEEEEEe
Q 007003 169 LHAGGKFGGSSSGYSVSGGLHGVGLSVVNALS-ESL--EVTVW-RDGMEYHQKYS 219 (622)
Q Consensus 169 lhag~kf~~~~~~y~~sgG~~GvGls~vNalS-~~~--~V~t~-r~g~~y~q~f~ 219 (622)
...|+|+.+|+.+. +.+ .++.+ .+|-.|.++|.
T Consensus 178 ------------------~~~g~G~~Lv~~lv~~q~~g~~~~~~~~Gt~~~i~~~ 214 (221)
T COG3920 178 ------------------SRGGFGLQLVERLVPEQLGGELEDERPDGTEFRLRFP 214 (221)
T ss_pred ------------------CCCCcHHHHHHHHHHHHcCCeEEEEcCCCEEEEEEEe
Confidence 13588999999987 333 22222 23555665554
No 54
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.90 E-value=0.0038 Score=70.53 Aligned_cols=82 Identities=23% Similarity=0.411 Sum_probs=56.5
Q ss_pred CChhhHHHHHHHHhhHHhhhcC--CCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAG--YASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g--~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~ 178 (622)
...|..++.++++||+++.... ....|.|.+..+ + .|+|.|||.|||.+.. +-+|...+++ +
T Consensus 430 ~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~--------~~iF~~~~~t-k---- 496 (545)
T PRK15053 430 STEFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLR--------DKIFEQGVST-R---- 496 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHH--------HHHhCCCCCC-C----
Confidence 3468889999999999997532 246788887753 3 5899999999998742 3456543321 1
Q ss_pred CCceeeecCcccccchhhhhccCc
Q 007003 179 SSGYSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 179 ~~~y~~sgG~~GvGls~vNalS~~ 202 (622)
. + ..|-+|+|++.|..+.+.
T Consensus 497 --~-~-~~~g~GlGL~ivk~iv~~ 516 (545)
T PRK15053 497 --A-D-EPGEHGIGLYLIASYVTR 516 (545)
T ss_pred --C-C-CCCCceeCHHHHHHHHHH
Confidence 0 0 113379999999887643
No 55
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.81 E-value=0.0035 Score=68.21 Aligned_cols=80 Identities=26% Similarity=0.460 Sum_probs=52.2
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEe--CCC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALL--ADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~--~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~ 179 (622)
..-|.+++..+|+||+.+...| ..|.|.+. .++ .|+|.|||.|||.+. .+-+|........ +.
T Consensus 270 ~~~l~qvl~NLl~NAik~~~~~--~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~--------~~~iF~pf~~~~~-~~-- 336 (380)
T PRK09303 270 QERIRQVLLNLLDNAIKYTPEG--GTITLSMLHRTTQKVQVSICDTGPGIPEEE--------QERIFEDRVRLPR-DE-- 336 (380)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--ceEEEEEEecCCCEEEEEEEEcCCCCCHHH--------HHHHccCceeCCC-CC--
Confidence 3457889999999999875443 46777653 233 589999999999874 3345544322211 11
Q ss_pred CceeeecCcccccchhhhhccC
Q 007003 180 SGYSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 180 ~~y~~sgG~~GvGls~vNalS~ 201 (622)
..+| .|+|+++|.-+.+
T Consensus 337 ----~~~G-~GLGL~i~~~iv~ 353 (380)
T PRK09303 337 ----GTEG-YGIGLSVCRRIVR 353 (380)
T ss_pred ----CCCc-ccccHHHHHHHHH
Confidence 1123 7999999888764
No 56
>PRK03660 anti-sigma F factor; Provisional
Probab=96.79 E-value=0.01 Score=55.31 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCC-CeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYA-SNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~-~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
.-+..++.|++.||+.++..+.. ..|.|.+.. ++ .++|.|+|.|||... .++.....+..
T Consensus 38 ~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~~~----------~~~~~~~~~~~------ 101 (146)
T PRK03660 38 TEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIEDIE----------EAMQPLYTTKP------ 101 (146)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCChHH----------HhhCCCcccCC------
Confidence 45677899999999987544322 567777663 33 589999999998521 12222111100
Q ss_pred ceeeecCcccccchhhhhccCceEEEE
Q 007003 181 GYSVSGGLHGVGLSVVNALSESLEVTV 207 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~~V~t 207 (622)
..+..|+|++++..+...+.++.
T Consensus 102 ----~~~~~GlGL~i~~~~~~~i~~~~ 124 (146)
T PRK03660 102 ----ELERSGMGFTVMESFMDEVEVES 124 (146)
T ss_pred ----CCCCccccHHHHHHhCCeEEEEe
Confidence 11236999999988876555543
No 57
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.79 E-value=0.0024 Score=70.38 Aligned_cols=83 Identities=19% Similarity=0.355 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-+..++.++|+||+.+...+ ..|.|.+.. ++ .|+|.|||.|||.+. .+-+|...+.+.+ . .
T Consensus 351 ~~l~qvl~nll~NAi~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~--------~~~lf~~~~~~~~---~--~ 415 (466)
T PRK10549 351 DRLMQLFNNLLENSLRYTDSG--GSLHISAEQRDKTLRLTFADSAPGVSDEQ--------LQKLFERFYRTEG---S--R 415 (466)
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEEEEEcCCEEEEEEEecCCCcCHHH--------HHHhccCcccCCC---C--c
Confidence 346778888888888875333 568888774 33 588999999999764 2345554332211 0 1
Q ss_pred eeeecCcccccchhhhhccCce
Q 007003 182 YSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~~ 203 (622)
.+ ..|-+|+|++.|..+.+.+
T Consensus 416 ~~-~~~g~GlGL~iv~~i~~~~ 436 (466)
T PRK10549 416 NR-ASGGSGLGLAICLNIVEAH 436 (466)
T ss_pred CC-CCCCCcHHHHHHHHHHHHc
Confidence 11 2234699999998876543
No 58
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.70 E-value=0.0058 Score=67.03 Aligned_cols=81 Identities=23% Similarity=0.296 Sum_probs=54.0
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCce
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y 182 (622)
-|..++.+++.||+.+.. ....|.|++.. ++ .|+|+|||.|||.+. ++.+|.........+
T Consensus 368 ~l~~vl~nli~Na~~~~~--~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~--------~~~i~~~~~~~~~~~------ 431 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSP--EGGTITLSAEVDGEQVALSVEDQGPGIPDYA--------LPRIFERFYSLPRPA------ 431 (475)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEEEEEEcCCEEEEEEEECCCCCCHHH--------HHHHHHHHccCCCCC------
Confidence 477888899999988742 24678888874 33 599999999999764 344555433221111
Q ss_pred eeecCcccccchhhhhccCce
Q 007003 183 SVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 183 ~~sgG~~GvGls~vNalS~~~ 203 (622)
...+-+|+|+..|+-+.+.+
T Consensus 432 -~~~~~~GlGL~i~~~~~~~~ 451 (475)
T PRK11100 432 -NGRKSTGLGLAFVREVARLH 451 (475)
T ss_pred -CCCCCcchhHHHHHHHHHHC
Confidence 11233699999999886543
No 59
>PRK10337 sensor protein QseC; Provisional
Probab=96.69 E-value=0.0039 Score=68.56 Aligned_cols=78 Identities=31% Similarity=0.423 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeee
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVS 185 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~s 185 (622)
-+..++.++|+||+.+...+ ..|.|.+..+ .|+|.|||.|||.+. .+.+|...+.+.. ...
T Consensus 352 ~l~~vl~Nli~NA~k~~~~~--~~i~i~~~~~-~i~i~D~G~Gi~~~~--------~~~if~~f~~~~~--------~~~ 412 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSPQG--SVVDVTLNAR-NFTVRDNGPGVTPEA--------LARIGERFYRPPG--------QEA 412 (449)
T ss_pred HHHHHHHHHHHHHHhhCCCC--CeEEEEEEee-EEEEEECCCCCCHHH--------HHHhcccccCCCC--------CCC
Confidence 46677788888888874332 4577777654 799999999999764 3345554332111 012
Q ss_pred cCcccccchhhhhccCce
Q 007003 186 GGLHGVGLSVVNALSESL 203 (622)
Q Consensus 186 gG~~GvGls~vNalS~~~ 203 (622)
.| +|+|++.|..+.+..
T Consensus 413 ~g-~GlGL~iv~~i~~~~ 429 (449)
T PRK10337 413 TG-SGLGLSIVRRIAKLH 429 (449)
T ss_pred Cc-cchHHHHHHHHHHHc
Confidence 23 899999999887654
No 60
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=96.67 E-value=0.0046 Score=69.62 Aligned_cols=49 Identities=22% Similarity=0.382 Sum_probs=40.1
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDL 153 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~ 153 (622)
-=|.+++--+|.||+|+...-.-..|.|.+-.+| .|+|.|||+|||.+.
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~ 547 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEA 547 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHH
Confidence 3588999999999999854434567999988644 699999999999984
No 61
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.64 E-value=0.004 Score=72.35 Aligned_cols=74 Identities=28% Similarity=0.469 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceee
Q 007003 108 HHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 184 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~ 184 (622)
.+++.-+||||+-. ++.+++|.|....++ .++|+|||+|||.+. .|.+|.....++|+++
T Consensus 777 eQVLiNLleNA~Ky--ap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~--------~~~IFD~F~r~~~~~~------- 839 (890)
T COG2205 777 EQVLINLLENALKY--APPGSEIRINAGVERENVVFSVIDEGPGIPEGE--------LERIFDKFYRGNKESA------- 839 (890)
T ss_pred HHHHHHHHHHHHhh--CCCCCeEEEEEEEecceEEEEEEeCCCCCChhH--------HHHhhhhhhcCCCCCC-------
Confidence 34455555555544 366788888877543 689999999999985 5679999999999764
Q ss_pred ecCcccccchhhhhc
Q 007003 185 SGGLHGVGLSVVNAL 199 (622)
Q Consensus 185 sgG~~GvGls~vNal 199 (622)
+.| -|+|+++|-.+
T Consensus 840 ~~G-~GLGLsIc~~i 853 (890)
T COG2205 840 TRG-VGLGLAICRGI 853 (890)
T ss_pred CCC-ccccHHHHHHH
Confidence 223 48899988776
No 62
>PRK09835 sensor kinase CusS; Provisional
Probab=96.55 E-value=0.0075 Score=66.70 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=52.1
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC--CC-eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA--DN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~--dg-~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
..-|..++.++|+||+.+...+ ..|.|.+.. ++ .|+|.|||.|||.+. .+.+|........ .
T Consensus 373 ~~~l~~vl~nll~Na~~~~~~~--~~I~i~~~~~~~~~~i~v~d~G~gi~~~~--------~~~if~~f~~~~~---~-- 437 (482)
T PRK09835 373 PLMLRRAISNLLSNALRYTPAG--EAITVRCQEVDHQVQLVVENPGTPIAPEH--------LPRLFDRFYRVDP---S-- 437 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEEeCCEEEEEEEECCCCcCHHH--------HHHHhCCcccCCC---C--
Confidence 3457888889999988875333 467777764 33 599999999999864 3345554322211 0
Q ss_pred ceeeecCcccccchhhhhccC
Q 007003 181 GYSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~ 201 (622)
. ....+-.|+|++.|..+-+
T Consensus 438 ~-~~~~~g~GlGL~i~~~i~~ 457 (482)
T PRK09835 438 R-QRKGEGSGIGLAIVKSIVV 457 (482)
T ss_pred C-CCCCCCcchHHHHHHHHHH
Confidence 0 1112236999998877654
No 63
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.52 E-value=0.0059 Score=72.00 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|..++..+|+||+++...+ ..|.|.+..+ + .|+|.|||.|||.+. .+.+|....++..-..
T Consensus 596 ~~L~~il~NLI~NAik~s~~~--~~I~I~~~~~~~~v~I~V~D~G~GI~~e~--------~~~IFe~F~t~~~~~~---- 661 (703)
T TIGR03785 596 ELIAQMLDKLVDNAREFSPED--GLIEVGLSQNKSHALLTVSNEGPPLPEDM--------GEQLFDSMVSVRDQGA---- 661 (703)
T ss_pred HHHHHHHHHHHHHHHHHCCCC--CeEEEEEEEcCCEEEEEEEEcCCCCCHHH--------HHHHhCCCeecCCCCC----
Confidence 457888889999999875433 4588887743 3 599999999999875 3456655433221111
Q ss_pred eeeecCcccccchhhhhccCc
Q 007003 182 YSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~ 202 (622)
..++-.|+|+++|.-+.+.
T Consensus 662 --~~~~g~GLGL~Ivr~Iv~~ 680 (703)
T TIGR03785 662 --QDQPHLGLGLYIVRLIADF 680 (703)
T ss_pred --CCCCCccHHHHHHHHHHHH
Confidence 1122379999999888754
No 64
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=96.51 E-value=0.019 Score=55.10 Aligned_cols=91 Identities=24% Similarity=0.321 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHhhHHhhhcC-CCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g-~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.+.-++.|++.||+.++..+ ....|.|++.. ++ .|+|+|+|.|++.+..+. .+.. ++...+.
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~--------~~~~------~~~~~~~ 107 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQ--------SLGP------YDGSEPI 107 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhcc--------ccCC------CCCCCCc
Confidence 46678999999999997653 23567777763 33 688999999998764321 0110 0000000
Q ss_pred eeeecCcccccchhhhhccCceEEEEEeCCEE
Q 007003 182 YSVSGGLHGVGLSVVNALSESLEVTVWRDGME 213 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~ 213 (622)
- ...-+|.|+.++..|+..+.++. .+|..
T Consensus 108 ~--~~~~~G~GL~Li~~L~D~v~~~~-~~G~~ 136 (159)
T TIGR01924 108 D--DLREGGLGLFLIETLMDEVEVYE-DSGVT 136 (159)
T ss_pred c--cCCCCccCHHHHHHhccEEEEEe-CCCEE
Confidence 0 01124899999999999888764 44544
No 65
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=96.51 E-value=0.0072 Score=63.97 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=50.7
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-------------CeEEEEECCCCccCCCcCCCCcchHHHhhhhcc
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-------------NSVSVADNGRGIPIDLHPATNKSALETVLTVLH 170 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-------------g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lh 170 (622)
..-|..++..+++||+++.. .....|.|.+... -.|+|.|||.|||.+.. +.+|...+
T Consensus 235 ~~~l~~vl~nLl~NA~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~--------~~iF~~~~ 305 (348)
T PRK11073 235 PDQIEQVLLNIVRNALQALG-PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQ--------DTLFYPMV 305 (348)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHH--------hhccCCcc
Confidence 34588999999999999853 2245676665321 14899999999998742 23443321
Q ss_pred CCCCCCCCCCceeeecCcccccchhhhhccC
Q 007003 171 AGGKFGGSSSGYSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 171 ag~kf~~~~~~y~~sgG~~GvGls~vNalS~ 201 (622)
+ ...+-.|+|++++..+.+
T Consensus 306 ~------------~~~~g~GlGL~i~~~iv~ 324 (348)
T PRK11073 306 S------------GREGGTGLGLSIARNLID 324 (348)
T ss_pred c------------CCCCCccCCHHHHHHHHH
Confidence 1 112237999999888764
No 66
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.50 E-value=0.007 Score=64.52 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=50.3
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-+..++..+|+||+..... .+.|.|.+..+ + .++|+|||.|||.+.. +-+|..... ++.
T Consensus 246 ~~l~~il~nLi~NA~k~~~~--~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~--------~~if~~f~~---~~~---- 308 (356)
T PRK10755 246 TLLRLLLRNLVENAHRYSPE--GSTITIKLSQEDGGAVLAVEDEGPGIDESKC--------GELSKAFVR---MDS---- 308 (356)
T ss_pred HHHHHHHHHHHHHHHhhCCC--CCcEEEEEEEcCCEEEEEEEECCCCCCHHHH--------HHhCCCeEe---CCC----
Confidence 34677888888888887432 36788887643 3 6899999999998742 234433211 110
Q ss_pred eeeecCcccccchhhhhccCc
Q 007003 182 YSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~ 202 (622)
..+-.|+|++.|.-+.+.
T Consensus 309 ---~~~g~GlGL~i~~~i~~~ 326 (356)
T PRK10755 309 ---RYGGIGLGLSIVSRITQL 326 (356)
T ss_pred ---CCCCcCHHHHHHHHHHHH
Confidence 122368999988777643
No 67
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.31 E-value=0.012 Score=66.31 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
..|..++..+|+||+++. ...|.|.+.. ++ .|+|.|||.|||.+. .+.+|...+.+. .
T Consensus 377 ~~l~~vl~NLi~NAik~~----~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~--------~~~iF~~f~~~~---~---- 437 (485)
T PRK10815 377 NDFMEVMGNVLDNACKYC----LEFVEISARQTDEHLHIVVEDDGPGIPESK--------RELIFDRGQRAD---T---- 437 (485)
T ss_pred HHHHHHHHHHHHHHHHhc----CCcEEEEEEEeCCEEEEEEEECCCCcCHHH--------HHHHhCCcccCC---C----
Confidence 346777777888887764 2346666653 33 589999999999874 334565422111 0
Q ss_pred eeeecCcccccchhhhhccCc
Q 007003 182 YSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~ 202 (622)
...| +|+|+++|..+.+.
T Consensus 438 --~~~G-~GLGL~Ivk~iv~~ 455 (485)
T PRK10815 438 --LRPG-QGLGLSVAREITEQ 455 (485)
T ss_pred --CCCC-cchhHHHHHHHHHH
Confidence 1123 69999999888654
No 68
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.27 E-value=0.011 Score=61.08 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|..++.++|.||++.... ...|.|.+.. ++ .++|.|||.|||.+.. +.+|.......+ .
T Consensus 228 ~~l~~vl~nll~Nai~~~~~--~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~--------~~if~~~~~~~~------~ 291 (333)
T TIGR02966 228 DELRSAFSNLVSNAIKYTPE--GGTITVRWRRDGGGAEFSVTDTGIGIAPEHL--------PRLTERFYRVDK------S 291 (333)
T ss_pred HHHHHHHHHHHHHhheeCCC--CCeEEEEEEEcCCEEEEEEEecCCCCCHHHH--------hhhccCceecCc------c
Confidence 45788999999999987433 3568887764 23 5899999999998753 234443221111 0
Q ss_pred eeeecCcccccchhhhhccC
Q 007003 182 YSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~ 201 (622)
.....+-.|+|++++.-+.+
T Consensus 292 ~~~~~~g~glGL~~~~~~~~ 311 (333)
T TIGR02966 292 RSRDTGGTGLGLAIVKHVLS 311 (333)
T ss_pred cccCCCCCcccHHHHHHHHH
Confidence 01112236899999888764
No 69
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.20 E-value=0.0096 Score=69.78 Aligned_cols=77 Identities=16% Similarity=0.328 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-+.+++.++++||+++... ...|.|.+.. ++ .|+|.|||.|||.+.. .+.+|.. |...
T Consensus 578 ~~l~~vl~nLl~NAik~~~~--~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i-------~~~lF~p------f~~~--- 639 (679)
T TIGR02916 578 ERLERVLGHLVQNALEATPG--EGRVAIRVERECGAARIEIEDSGCGMSPAFI-------RERLFKP------FDTT--- 639 (679)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CCcEEEEEEEcCCEEEEEEEEcCCCcChHHH-------HHhcCCC------CCCC---
Confidence 45889999999999998533 3568888874 33 6899999999998641 1234433 2221
Q ss_pred eeeecCcccccchhhhhccCc
Q 007003 182 YSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~ 202 (622)
.++-.|+|++.+..+.+.
T Consensus 640 ---~~~G~GLGL~i~~~iv~~ 657 (679)
T TIGR02916 640 ---KGAGMGIGVYECRQYVEE 657 (679)
T ss_pred ---CCCCcchhHHHHHHHHHH
Confidence 113368999988877543
No 70
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.16 E-value=0.012 Score=64.61 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=51.8
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|.+++.++|+||+.+. .+.|.|.+.. ++ .++|.|||.|||.+. ++.+|...+.+.+-
T Consensus 352 ~~l~~~l~nli~NA~~~~----~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~~~~~~~~------ 413 (461)
T PRK09470 352 NALASALENIVRNALRYS----HTKIEVAFSVDKDGLTITVDDDGPGVPEEE--------REQIFRPFYRVDEA------ 413 (461)
T ss_pred HHHHHHHHHHHHHHHHhC----CCcEEEEEEEECCEEEEEEEECCCCCCHHH--------HHHhcCCCccCCcc------
Confidence 347888899999999873 3567777663 33 589999999999874 34455544332211
Q ss_pred eeeecCcccccchhhhhccC
Q 007003 182 YSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~ 201 (622)
.....+-.|+|++.|+-+.+
T Consensus 414 ~~~~~~g~GlGL~iv~~~v~ 433 (461)
T PRK09470 414 RDRESGGTGLGLAIVENAIQ 433 (461)
T ss_pred cCCCCCCcchhHHHHHHHHH
Confidence 11122346999999887654
No 71
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=96.15 E-value=0.023 Score=64.32 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCC
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPID 152 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~ 152 (622)
.+.+++.|+++||+.+. .++.|.|++.. ++ .++|.|||.|||.+
T Consensus 410 ~L~ril~nlL~NAiKha---~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 410 TLFRVCQEGLNNIVKHA---DASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 47788999999999984 35678888774 33 59999999999965
No 72
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.09 E-value=0.021 Score=62.41 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCce
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y 182 (622)
-|..++..+|+||+.+ + ...|.|++..++ .|+|.|||.|||.+. .+-+|...+.+.. .
T Consensus 331 ~l~~il~NLl~NA~k~---~-~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~~~~~f~~~~~------~- 391 (435)
T PRK09467 331 AIKRALANLVVNAARY---G-NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQ--------LKHLFQPFTRGDS------A- 391 (435)
T ss_pred HHHHHHHHHHHHHHHh---C-CCeEEEEEEecCCEEEEEEEecCCCcCHHH--------HHHhcCCcccCCC------C-
Confidence 4677888888888876 3 467888877533 599999999999764 3345544322111 1
Q ss_pred eeecCcccccchhhhhccCce
Q 007003 183 SVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 183 ~~sgG~~GvGls~vNalS~~~ 203 (622)
. ..+-+|+|++.|..+.+.+
T Consensus 392 ~-~~~g~GlGL~iv~~i~~~~ 411 (435)
T PRK09467 392 R-GSSGTGLGLAIVKRIVDQH 411 (435)
T ss_pred C-CCCCeehhHHHHHHHHHHC
Confidence 1 1233899999998887543
No 73
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.04 E-value=0.03 Score=67.25 Aligned_cols=94 Identities=18% Similarity=0.356 Sum_probs=60.6
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC---------------C---eEEEEECCCCccCCCcCCCCcchHHHhh
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD---------------N---SVSVADNGRGIPIDLHPATNKSALETVL 166 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d---------------g---~IsV~DnGrGIP~~~h~~~g~~~~e~v~ 166 (622)
.-|.+++..+++||+++...+ ..|.|.+..+ | .|+|.|||.|||.+. .+-+|
T Consensus 559 ~~L~qvl~NLl~NAik~~~~~--g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~--------~~~iF 628 (828)
T PRK13837 559 AELQQVLMNLCSNAAQAMDGA--GRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAV--------LPHIF 628 (828)
T ss_pred HHHHHHHHHHHHHHHHHcccC--CeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHH--------HHHhh
Confidence 458889999999999985433 5676666532 2 589999999999874 33455
Q ss_pred hhccCCCCCCCCCCceeeecCcccccchhhhhccCce----EEEEEeC-CEEEEEEEeC
Q 007003 167 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL----EVTVWRD-GMEYHQKYSR 220 (622)
Q Consensus 167 t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~----~V~t~r~-g~~y~q~f~~ 220 (622)
...+++ . . +-.|+|+++|..+.+.+ ++++..+ |..+.+.+-.
T Consensus 629 e~F~~~-----~------~-~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~ 675 (828)
T PRK13837 629 EPFFTT-----R------A-GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPP 675 (828)
T ss_pred CCcccC-----C------C-CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeC
Confidence 543211 0 1 33799999887776544 3433322 4566666643
No 74
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.97 E-value=0.017 Score=64.81 Aligned_cols=75 Identities=27% Similarity=0.421 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC--CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA--DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~--dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
-|..++.++++||+.+... ...|.|.+.. ++ .|+|.|||+|||.+.. +.+|....
T Consensus 500 ~l~~~~~nli~na~~~~~~--~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~--------~~~f~~~~----------- 558 (607)
T PRK11360 500 LLKQVLLNILINAVQAISA--RGKIRIRTWQYSDGQVAVSIEDNGCGIDPELL--------KKIFDPFF----------- 558 (607)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHH--------hhhcCCce-----------
Confidence 4788889999999987543 3467777652 32 6999999999998742 22333221
Q ss_pred eeeecCcccccchhhhhccCc
Q 007003 182 YSVSGGLHGVGLSVVNALSES 202 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~ 202 (622)
....+-.|+|+..++-+.+.
T Consensus 559 -~~~~~g~glGL~~~~~~~~~ 578 (607)
T PRK11360 559 -TTKAKGTGLGLALSQRIINA 578 (607)
T ss_pred -eCCCCCCchhHHHHHHHHHH
Confidence 11123379999998887643
No 75
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.91 E-value=0.019 Score=69.10 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=53.6
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|..++..+|.||+++... ..|.|.+..+ + .|+|.|||.|||.+. .+-+|.....+.
T Consensus 512 ~~l~~il~NLl~NAik~~~~---g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~-------- 572 (921)
T PRK15347 512 LRLRQILVNLLGNAVKFTET---GGIRLRVKRHEQQLCFTVEDTGCGIDIQQ--------QQQIFTPFYQAD-------- 572 (921)
T ss_pred HHHHHHHHHHHHHHhhcCCC---CCEEEEEEEcCCEEEEEEEEcCCCCCHHH--------HHHHhcCcccCC--------
Confidence 45788899999999987533 3587877643 3 689999999999874 344565432211
Q ss_pred eeeecCcccccchhhhhccCce
Q 007003 182 YSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~~ 203 (622)
...|-.|+|++.+.-+.+.+
T Consensus 573 --~~~~g~GLGL~i~~~~~~~~ 592 (921)
T PRK15347 573 --THSQGTGLGLTIASSLAKMM 592 (921)
T ss_pred --CCCCCCchHHHHHHHHHHHc
Confidence 01233799999999887654
No 76
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.87 E-value=0.016 Score=64.75 Aligned_cols=47 Identities=40% Similarity=0.560 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcC
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHP 155 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~ 155 (622)
-+..||.|-+-||+-++ .+++|+|++.. +| .++|+|||+|||...+|
T Consensus 481 HlLqIvREAlsNa~KHa---~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~~e~ 530 (574)
T COG3850 481 HLLQIVREALSNAIKHA---QASEIKVTVSQNDGQVTLTVEDNGVGIDEAAEP 530 (574)
T ss_pred HHHHHHHHHHHHHHHhc---ccCeEEEEEEecCCeEEEEEeeCCcCCCCccCC
Confidence 35678999999999995 68999999985 36 79999999999998544
No 77
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.84 E-value=0.026 Score=68.08 Aligned_cols=95 Identities=22% Similarity=0.337 Sum_probs=61.0
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
+.-|..++..+|+||+.+.. ...|.|.+..++ .|+|.|||.|||.+. .+.+|.......
T Consensus 559 ~~~l~qil~NLl~NAik~~~---~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~------- 620 (914)
T PRK11466 559 PRRIRQVITNLLSNALRFTD---EGSIVLRSRTDGEQWLVEVEDSGCGIDPAK--------LAEIFQPFVQVS------- 620 (914)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCeEEEEEEEcCCEEEEEEEECCCCCCHHH--------HHHHhchhhcCC-------
Confidence 34577889999999998743 346888877443 589999999999875 234554332110
Q ss_pred ceeeecCcccccchhhhhccCce----EEEEEe-CCEEEEEEEe
Q 007003 181 GYSVSGGLHGVGLSVVNALSESL----EVTVWR-DGMEYHQKYS 219 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~----~V~t~r-~g~~y~q~f~ 219 (622)
...|-.|+|+++|.-+.+.+ ++.+.. .|..+.+.+.
T Consensus 621 ---~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP 661 (914)
T PRK11466 621 ---GKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP 661 (914)
T ss_pred ---CCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEE
Confidence 01133799999998887655 333332 2455666553
No 78
>PRK10490 sensor protein KdpD; Provisional
Probab=95.81 E-value=0.021 Score=69.15 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=55.2
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
..-|.+++..+|+||+.+... .+.|.|.+..+ + .|+|.|||.|||.+. .+-+|...+.+.+ ..
T Consensus 776 ~~~L~qVL~NLL~NAik~s~~--g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~--------~~~IFepF~~~~~-~~--- 841 (895)
T PRK10490 776 GPLFERVLINLLENAVKYAGA--QAEIGIDAHVEGERLQLDVWDNGPGIPPGQ--------EQLIFDKFARGNK-ES--- 841 (895)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEEeCCEEEEEEEECCCCCCHHH--------HHHhcCCCccCCC-CC---
Confidence 345788999999999988533 35687777743 3 589999999999874 3456665433211 10
Q ss_pred ceeeecCcccccchhhhhccCce
Q 007003 181 GYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~ 203 (622)
...| .|+|++++..+.+.+
T Consensus 842 ---~~~G-~GLGL~Ivk~ive~h 860 (895)
T PRK10490 842 ---AIPG-VGLGLAICRAIVEVH 860 (895)
T ss_pred ---CCCC-ccHHHHHHHHHHHHc
Confidence 1123 799999988876543
No 79
>PRK13560 hypothetical protein; Provisional
Probab=95.64 E-value=0.031 Score=65.77 Aligned_cols=46 Identities=33% Similarity=0.509 Sum_probs=36.3
Q ss_pred hhHHHHHHHHhhHHhhhcC-CCCeEEEEEeCC--C--eEEEEECCCCccCC
Q 007003 107 LHHLVYEILDNAVDEAQAG-YASNIEVALLAD--N--SVSVADNGRGIPID 152 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~g-~~~~I~V~i~~d--g--~IsV~DnGrGIP~~ 152 (622)
+..++.++|.||++++..+ ....|.|.+... + .|+|.|||.|||.+
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 4568899999999987543 346788887743 4 58999999999976
No 80
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.52 E-value=0.021 Score=58.02 Aligned_cols=47 Identities=30% Similarity=0.594 Sum_probs=38.8
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDL 153 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~ 153 (622)
..-+.+++..+++||+++.. ...|.|.+..++ .++|.|||.|||.+.
T Consensus 226 ~~~l~~vl~nLi~NAi~~~~---~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~ 275 (336)
T COG0642 226 PERLRQVLVNLLSNAIKYTP---GGEITISVRQDDEQVTISVEDTGPGIPEEE 275 (336)
T ss_pred HHHHHHHHHHHHHHHhccCC---CCeEEEEEEecCCeEEEEEEcCCCCCCHHH
Confidence 35578899999999999854 578999988643 699999999999875
No 81
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.46 E-value=0.043 Score=66.55 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=55.7
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEe--CCC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALL--ADN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~--~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~ 178 (622)
+..-|..++..+|+||+.+.. ...|.|.+. +++ .|+|.|||.|||.+. .+.+|.....+. ..
T Consensus 576 d~~~l~~il~nLi~NAik~~~---~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~--~~- 641 (968)
T TIGR02956 576 DGPRIRQVLINLVGNAIKFTD---RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEE--------QATLFDAFTQAD--GR- 641 (968)
T ss_pred CHHHHHHHHHHHHHHHHhhCC---CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHH--------HHHHHhhhhccC--CC-
Confidence 346688999999999999853 345666665 333 499999999999875 345665433322 10
Q ss_pred CCceeeecCcccccchhhhhccCce
Q 007003 179 SSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 179 ~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
... |-.|+|++.|.-+.+.+
T Consensus 642 ----~~~-~g~GLGL~i~~~l~~~~ 661 (968)
T TIGR02956 642 ----RRS-GGTGLGLAISQRLVEAM 661 (968)
T ss_pred ----CCC-CCccHHHHHHHHHHHHc
Confidence 011 33799999998887665
No 82
>PRK13557 histidine kinase; Provisional
Probab=95.34 E-value=0.1 Score=58.19 Aligned_cols=96 Identities=20% Similarity=0.350 Sum_probs=59.4
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEe----------------CCC--eEEEEECCCCccCCCcCCCCcchHHHhh
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALL----------------ADN--SVSVADNGRGIPIDLHPATNKSALETVL 166 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~----------------~dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~ 166 (622)
.-|.+++..++.||+++...+ ..|.|... .++ .|+|.|||.|||.+.. +.+|
T Consensus 276 ~~l~~vl~nll~NA~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~--------~~if 345 (540)
T PRK13557 276 TQAEVALLNVLINARDAMPEG--GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEIL--------ARVM 345 (540)
T ss_pred HHHHHHHHHHHHHHHHhcccC--CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHH--------Hhcc
Confidence 457889999999999986444 44555543 122 5899999999998742 3455
Q ss_pred hhccCCCCCCCCCCceeeecCcccccchhhhhccCc----eEEEEEe-CCEEEEEEEeC
Q 007003 167 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES----LEVTVWR-DGMEYHQKYSR 220 (622)
Q Consensus 167 t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~----~~V~t~r-~g~~y~q~f~~ 220 (622)
...++... .++-.|+|++++.-+-+. +.+++.. .|..+.+.+-.
T Consensus 346 ~~~~~~~~----------~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~ 394 (540)
T PRK13557 346 DPFFTTKE----------EGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPA 394 (540)
T ss_pred CCCcccCC----------CCCCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeC
Confidence 54332211 122358899887766544 3454443 25566776643
No 83
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.29 E-value=0.051 Score=64.52 Aligned_cols=100 Identities=23% Similarity=0.373 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC--C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD--N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d--g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~ 179 (622)
..-|.+++..+|+||+++.. ...|.|.+..+ + .++|.|||.|||.+. .+-+|........-.
T Consensus 396 ~~~l~qvl~NLl~NAik~~~---~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~iF~~f~~~~~~~--- 461 (779)
T PRK11091 396 GTRLRQILWNLISNAVKFTQ---QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDE--------LDKIFAMYYQVKDSH--- 461 (779)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CCcEEEEEEEccCCEEEEEEEecCCCCCHHH--------HHHHHHHhhcccCCC---
Confidence 34588999999999999852 34566666532 3 689999999999874 334666543321100
Q ss_pred CceeeecCcccccchhhhhccCce----EEEEEe-CCEEEEEEEe
Q 007003 180 SGYSVSGGLHGVGLSVVNALSESL----EVTVWR-DGMEYHQKYS 219 (622)
Q Consensus 180 ~~y~~sgG~~GvGls~vNalS~~~----~V~t~r-~g~~y~q~f~ 219 (622)
.-. ..+-.|+|+++|.-+-+.+ +|++.. .|..|.+.+.
T Consensus 462 -~~~-~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP 504 (779)
T PRK11091 462 -GGK-PATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIH 504 (779)
T ss_pred -CCC-CCCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEe
Confidence 001 1233699999988776544 344332 2455666553
No 84
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=95.19 E-value=0.13 Score=48.87 Aligned_cols=84 Identities=27% Similarity=0.296 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHhhHHhhhcCCC--CeEEEEEe--CCC-eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 106 GLHHLVYEILDNAVDEAQAGYA--SNIEVALL--ADN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~--~~I~V~i~--~dg-~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
-+...+.|++.|++.++-++-. ..|.|... ++. .|.|+|.|.||+.- +..+... |
T Consensus 40 ~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~~----------~~~~~~~-----~----- 99 (146)
T COG2172 40 DLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIEDL----------EESLGPG-----D----- 99 (146)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCCCH----------HHhcCCC-----C-----
Confidence 4677899999999999876422 34555544 343 69999999777642 1222211 1
Q ss_pred ceeeecCc--ccccchhhhhccCceEEEEEeCC
Q 007003 181 GYSVSGGL--HGVGLSVVNALSESLEVTVWRDG 211 (622)
Q Consensus 181 ~y~~sgG~--~GvGls~vNalS~~~~V~t~r~g 211 (622)
....++ .|+|+.++.-+...|+++...++
T Consensus 100 --~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~~~ 130 (146)
T COG2172 100 --TTAEGLQEGGLGLFLAKRLMDEFSYERSEDG 130 (146)
T ss_pred --CCCcccccccccHHHHhhhheeEEEEeccCC
Confidence 111222 48999999999899999876666
No 85
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.09 E-value=0.035 Score=60.04 Aligned_cols=47 Identities=34% Similarity=0.489 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLH 154 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h 154 (622)
..|+.++.|.|.|++=+ +.+++|.|++.. ++ .++|.|||+|.+++..
T Consensus 278 ~~l~rivQEaltN~~rH---a~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 278 DALFRIVQEALTNAIRH---AQATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHHHHHhc---cCCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 57899999999999999 579999999984 44 6999999999999863
No 86
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=95.00 E-value=0.052 Score=66.07 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=52.8
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|.+++..+|+||+.....| .|.|.+.. ++ .|+|.|||.|||.+. .+-+|........ .
T Consensus 561 ~~L~qvl~NLl~NAik~t~~G---~I~I~v~~~~~~l~i~V~DtG~GI~~e~--------~~~lFepF~~~~~------~ 623 (924)
T PRK10841 561 MRLQQVISNLLSNAIKFTDTG---CIVLHVRVDGDYLSFRVRDTGVGIPAKE--------VVRLFDPFFQVGT------G 623 (924)
T ss_pred HHHHHHHHHHHHHHHhhCCCC---cEEEEEEEeCCEEEEEEEEcCcCCCHHH--------HHHHhcccccCCC------C
Confidence 457889999999999985333 46666553 33 689999999999874 3345554332211 1
Q ss_pred eeeecCcccccchhhhhccCce
Q 007003 182 YSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~~ 203 (622)
.....+-.|+|+++|.-+.+.+
T Consensus 624 ~~~~~~GtGLGL~I~k~lv~~~ 645 (924)
T PRK10841 624 VQRNFQGTGLGLAICEKLINMM 645 (924)
T ss_pred CCCCCCCeehhHHHHHHHHHHC
Confidence 1111123699999998876554
No 87
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.79 E-value=0.06 Score=64.78 Aligned_cols=100 Identities=20% Similarity=0.331 Sum_probs=58.3
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC--CC----eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA--DN----SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~--dg----~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~ 178 (622)
.-|..++..+|.||+.+...| .-.|.|.+.. ++ .|+|.|||.|||.+. .+.+|.....+.+
T Consensus 407 ~~l~~vl~NLl~NAik~~~~g-~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~~---- 473 (919)
T PRK11107 407 LRLQQIITNLVGNAIKFTESG-NIDILVELRALSNTKVQLEVQIRDTGIGISERQ--------QSQLFQAFRQADA---- 473 (919)
T ss_pred HHHHHHHHHHHHHHhhcCCCC-cEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHH--------HHHHhhhhccCCC----
Confidence 347788999999999875433 1233444332 22 489999999999864 3345554322111
Q ss_pred CCceeeecCcccccchhhhhccCce----EEEEEe-CCEEEEEEEe
Q 007003 179 SSGYSVSGGLHGVGLSVVNALSESL----EVTVWR-DGMEYHQKYS 219 (622)
Q Consensus 179 ~~~y~~sgG~~GvGls~vNalS~~~----~V~t~r-~g~~y~q~f~ 219 (622)
......|-.|+|+++|.-+.+.+ +|++.. .|..+.+.+.
T Consensus 474 --~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp 517 (919)
T PRK11107 474 --SISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLP 517 (919)
T ss_pred --CCCCCCCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEE
Confidence 11111234799999888776554 343332 2555666554
No 88
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=94.76 E-value=0.054 Score=62.01 Aligned_cols=43 Identities=40% Similarity=0.585 Sum_probs=34.3
Q ss_pred hhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCC
Q 007003 107 LHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPID 152 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~ 152 (622)
+.+++.|+|.||+.++ .++.|.|.+..+ + .++|.|||.|||.+
T Consensus 470 l~~il~ell~NA~kha---~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHA---QASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhC---CCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 6788899999998884 356788888743 3 58999999999975
No 89
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.70 E-value=0.044 Score=58.38 Aligned_cols=94 Identities=27% Similarity=0.417 Sum_probs=67.6
Q ss_pred hHhhCCCeee-ccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHh
Q 007003 90 AVRKRPAMYI-GSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETV 165 (622)
Q Consensus 90 ~Vr~RP~mYi-Gs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v 165 (622)
.||+-|.-=+ =..++.-+.++++-||.||+-..-+| .+|.|.+...+ .|+|.|.|-|||... ++.+
T Consensus 325 ~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~G--g~Itv~~~~~~~~v~iSI~D~G~gIPk~d--------~~~i 394 (459)
T COG5002 325 FVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDG--GRITVSVKQRETWVEISISDQGLGIPKED--------LEKI 394 (459)
T ss_pred HHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCC--CeEEEEEeeeCcEEEEEEccCCCCCCchh--------HHHH
Confidence 6777776321 23467889999999999999886555 77888887533 699999999999875 4567
Q ss_pred hhhccCCCCCCCCCCceeeecCcccccchhhhhc
Q 007003 166 LTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNAL 199 (622)
Q Consensus 166 ~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNal 199 (622)
|.+.+-.-| +-..++|=-|+|++.+--+
T Consensus 395 FdrfyRvdk------ARsR~~gGTGLGLaIakei 422 (459)
T COG5002 395 FDRFYRVDK------ARSRKMGGTGLGLAIAKEI 422 (459)
T ss_pred HHHHhhhhh------hhhhcCCCCchhHHHHHHH
Confidence 877554433 2223566689999877654
No 90
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.44 E-value=0.22 Score=60.45 Aligned_cols=99 Identities=15% Similarity=0.263 Sum_probs=61.0
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC--C--C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA--D--N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFG 176 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~--d--g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~ 176 (622)
+..-|.+++..+|.||++.... ..|.|.+.. + + .|+|.|+|.|||.+.. +-+|.........
T Consensus 562 D~~~L~QVL~NLL~NAik~t~~---G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l--------~~IFePF~t~~~~- 629 (894)
T PRK10618 562 DRDALRKILLLLLNYAITTTAY---GKITLEVDQDESSPDRLTIRILDTGAGVSIKEL--------DNLHFPFLNQTQG- 629 (894)
T ss_pred cHHHHHHHHHHHHHHHHHhCCC---CeEEEEEEEccCCCcEEEEEEEECCCCCCHHHH--------HHhcCccccCCCC-
Confidence 3456889999999999987533 356666652 2 2 5899999999998752 3345433221110
Q ss_pred CCCCceeeecCcccccchhhhhccCce----EEEEEe-CCEEEEEEEe
Q 007003 177 GSSSGYSVSGGLHGVGLSVVNALSESL----EVTVWR-DGMEYHQKYS 219 (622)
Q Consensus 177 ~~~~~y~~sgG~~GvGls~vNalS~~~----~V~t~r-~g~~y~q~f~ 219 (622)
+ + .++-.|+|+++|.-+.+.+ +|++.. .|..|.+.+.
T Consensus 630 ~-----~-~~~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LP 671 (894)
T PRK10618 630 D-----R-YGKASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLK 671 (894)
T ss_pred C-----C-CCCCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEE
Confidence 0 1 1223699999998887655 333322 2455666554
No 91
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.35 E-value=0.12 Score=60.43 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=31.5
Q ss_pred HHHHHHhhHHhhhc--------C--CCCeEEEEEeCC-C--eEEEEECCCCccCCC
Q 007003 111 VYEILDNAVDEAQA--------G--YASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (622)
Q Consensus 111 v~EildNaiDe~~~--------g--~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~ 153 (622)
+..+|.||+|+... | ....|.|....+ + .|+|.|||+|||.+.
T Consensus 390 L~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~ 445 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRER 445 (670)
T ss_pred HHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHH
Confidence 35899999998532 1 134688887743 3 589999999999863
No 92
>PRK13559 hypothetical protein; Provisional
Probab=94.34 E-value=0.15 Score=54.45 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHhhHHhhh-cCCCCeEEEEE--eC-CC--eEEEEECCCCccCC
Q 007003 106 GLHHLVYEILDNAVDEAQ-AGYASNIEVAL--LA-DN--SVSVADNGRGIPID 152 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~-~g~~~~I~V~i--~~-dg--~IsV~DnGrGIP~~ 152 (622)
.|..++.|++.||+.+.. ......|.|.+ .. ++ .+.|.|||.|+|.+
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 578999999999999832 11246788888 43 33 68889999887654
No 93
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=93.71 E-value=0.08 Score=60.11 Aligned_cols=56 Identities=32% Similarity=0.437 Sum_probs=44.5
Q ss_pred eeccCCCChhhHHHHHHHHhhHHhhhc-----CCCCeEEEEEeC-CC--eEEEEECCCCccCCC
Q 007003 98 YIGSTGPRGLHHLVYEILDNAVDEAQA-----GYASNIEVALLA-DN--SVSVADNGRGIPIDL 153 (622)
Q Consensus 98 YiGs~~~~gL~~lv~EildNaiDe~~~-----g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~ 153 (622)
.+|.-+.+-|.+++.-|+.||.++..+ +....|.++.+. || .+.|.|||+|.|.+.
T Consensus 592 l~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~ 655 (712)
T COG5000 592 LIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPREN 655 (712)
T ss_pred eeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHH
Confidence 556667788999999999999998753 123358888884 67 688999999999986
No 94
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.64 E-value=0.17 Score=63.04 Aligned_cols=99 Identities=18% Similarity=0.410 Sum_probs=58.4
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEe---CCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALL---ADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGG 177 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~---~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~ 177 (622)
..-|.+++..+|+||+++...| .-.|.+... .++ .|+|.|||.|||.+. .+-+|.....+ +..
T Consensus 826 ~~~l~qvl~NLl~NAik~~~~g-~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~--------~~~iF~~f~~~-~~~- 894 (1197)
T PRK09959 826 PQAFKQVLSNLLSNALKFTTEG-AVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEE--------QQQLFKRYSQT-SAG- 894 (1197)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC-CEEEEEEEeeecCCceEEEEEEEEcCCCCCHHH--------HHHhhcccccc-ccC-
Confidence 3468899999999999986443 223333221 222 479999999999874 23455543222 111
Q ss_pred CCCceeeecCcccccchhhhhccCceE--EEE--EeC-CEEEEEEEe
Q 007003 178 SSSGYSVSGGLHGVGLSVVNALSESLE--VTV--WRD-GMEYHQKYS 219 (622)
Q Consensus 178 ~~~~y~~sgG~~GvGls~vNalS~~~~--V~t--~r~-g~~y~q~f~ 219 (622)
...+| .|+|+++|.-+.+.+- +++ ..+ |..+++.+-
T Consensus 895 -----~~~~G-~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP 935 (1197)
T PRK09959 895 -----RQQTG-SGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIP 935 (1197)
T ss_pred -----CCCCC-cCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEE
Confidence 11123 7999999988766542 333 222 455666553
No 95
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=93.50 E-value=0.19 Score=54.10 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=68.9
Q ss_pred ccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhc-----CC-CCeEEEEEeC---CCeEEEEECCCCccCCCcC
Q 007003 85 LEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA-----GY-ASNIEVALLA---DNSVSVADNGRGIPIDLHP 155 (622)
Q Consensus 85 L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~-----g~-~~~I~V~i~~---dg~IsV~DnGrGIP~~~h~ 155 (622)
|.--+|.-++++.|| +.-|+|++.||+.||.-+.+. +. -..|+|+|-. |=.|.|+|-|-|||.+.
T Consensus 243 l~i~~~~a~~~~vyv----PshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~-- 316 (414)
T KOG0787|consen 243 LIIEGHNALSFTVYV----PSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRD-- 316 (414)
T ss_pred eEecCcccccCcccc----chHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhH--
Confidence 334445555555563 467999999999999999875 21 4558888873 34899999999999875
Q ss_pred CCCcchHHHhhhhccCCCCCCCCCCc-eeeecCcccccchhhhhccCce
Q 007003 156 ATNKSALETVLTVLHAGGKFGGSSSG-YSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 156 ~~g~~~~e~v~t~lhag~kf~~~~~~-y~~sgG~~GvGls~vNalS~~~ 203 (622)
.+.+|.-..++..-...++. ..--.| -|.|+...-.+.+.|
T Consensus 317 ------~drlf~Y~ySTa~~~~~d~~~~~plaG-fG~GLPisrlYa~yf 358 (414)
T KOG0787|consen 317 ------IDRLFSYMYSTAPAPSSDNNRTAPLAG-FGFGLPISRLYARYF 358 (414)
T ss_pred ------HHHHHhhhcccCCCCCCCCCCcCcccc-cccCCcHHHHHHHHh
Confidence 34566655444322111111 111122 478899999988776
No 96
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=92.72 E-value=0.46 Score=50.18 Aligned_cols=76 Identities=25% Similarity=0.492 Sum_probs=47.1
Q ss_pred CChhhHHHHHHHHhhHHhhhc--CCCCe--------EEEEEeCC-----CeEEEEECCCCccCCCcCCCCcchHHHhhhh
Q 007003 104 PRGLHHLVYEILDNAVDEAQA--GYASN--------IEVALLAD-----NSVSVADNGRGIPIDLHPATNKSALETVLTV 168 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~--g~~~~--------I~V~i~~d-----g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~ 168 (622)
..-|.++|+-||.||+.+.-. ..... +.++|... -.+.|.|||+|||.+.- +.+|--
T Consensus 239 ~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~--------~~lF~P 310 (363)
T COG3852 239 RDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQ--------DHLFYP 310 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHh--------hhcccc
Confidence 356889999999999987531 10122 34444421 16899999999999853 345543
Q ss_pred ccCCCCCCCCCCceeeecCcccccchhhhhc
Q 007003 169 LHAGGKFGGSSSGYSVSGGLHGVGLSVVNAL 199 (622)
Q Consensus 169 lhag~kf~~~~~~y~~sgG~~GvGls~vNal 199 (622)
+- ++|-+ | -|+|++++.=+
T Consensus 311 ~V-s~r~~----------G-sGLGLala~~l 329 (363)
T COG3852 311 MV-SGREG----------G-TGLGLALAQNL 329 (363)
T ss_pred cc-ccCCC----------C-ccccHHHHHHH
Confidence 32 22322 2 48888876544
No 97
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=92.64 E-value=0.16 Score=57.66 Aligned_cols=43 Identities=37% Similarity=0.459 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhhHHhhhcCCCCeEEEEEeC--CC--eEEEEECCCCccCC
Q 007003 107 LHHLVYEILDNAVDEAQAGYASNIEVALLA--DN--SVSVADNGRGIPID 152 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~g~~~~I~V~i~~--dg--~IsV~DnGrGIP~~ 152 (622)
+..++.|++.||+.+. ....|.|.+.. ++ .++|.|||+|||.+
T Consensus 472 l~qv~~nll~NA~k~~---~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHA---NASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcC---CCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 6678899999998873 35678888763 34 58999999999964
No 98
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.71 Score=51.20 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=90.2
Q ss_pred HHHHHHHhhHHhhhc------------CCCCe--EEEEEeC-CCeEEEEECCCCccCCCc-------CCCCcchHHHhhh
Q 007003 110 LVYEILDNAVDEAQA------------GYASN--IEVALLA-DNSVSVADNGRGIPIDLH-------PATNKSALETVLT 167 (622)
Q Consensus 110 lv~EildNaiDe~~~------------g~~~~--I~V~i~~-dg~IsV~DnGrGIP~~~h-------~~~g~~~~e~v~t 167 (622)
.++|+|.||-|+.-. |.... |+|..+. .....|.|.|.||.-+.. .++|- ...+.
T Consensus 99 FLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGT---s~Fl~ 175 (785)
T KOG0020|consen 99 FLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGT---SEFLE 175 (785)
T ss_pred HHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccH---HHHHH
Confidence 468999999998531 22333 4444443 347999999999987531 12222 22333
Q ss_pred hccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeC-CEEEEEEEeCCcc-cccceeeecCCCCCCCCCcEEE
Q 007003 168 VLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRD-GMEYHQKYSRGKP-VTTLTCHVLPVDSKDRQGTRIR 245 (622)
Q Consensus 168 ~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~-g~~y~q~f~~G~~-~~~~~~~~~~~~~~~~~GT~V~ 245 (622)
.+...+.-.+ .-.---|+.|||.-++=.++.+..|+++.+ ...|..+-..+.- +++. |.+.+-.+||.|+
T Consensus 176 Km~~~~~~~~---~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESdan~FsvseD-----prg~tL~RGt~It 247 (785)
T KOG0020|consen 176 KMQDSGDSEG---LMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESDANSFSVSED-----PRGNTLGRGTEIT 247 (785)
T ss_pred Hhhccccchh---hHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeeccCcceeeecC-----CCCCcccCccEEE
Confidence 3333332211 111235899999999999999999998764 4566665544432 2221 2356678999999
Q ss_pred EEeCccccccccccCHHHHHHHHHHHh
Q 007003 246 FWPDKQVFTTAIQFDHNTIAGRIRELA 272 (622)
Q Consensus 246 F~PD~~iF~~~~~~d~~~i~~rl~elA 272 (622)
...--+- ..-++.+++...++.++
T Consensus 248 L~LkeEA---~dyLE~dtlkeLvkkYS 271 (785)
T KOG0020|consen 248 LYLKEEA---GDYLEEDTLKELVKKYS 271 (785)
T ss_pred EEehhhh---hhhcchhHHHHHHHHHH
Confidence 8722111 11245678888888877
No 99
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=91.74 E-value=0.22 Score=40.34 Aligned_cols=71 Identities=35% Similarity=0.419 Sum_probs=47.3
Q ss_pred eEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeC
Q 007003 500 EIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTD 579 (622)
Q Consensus 500 eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTD 579 (622)
.++||||++-.-+..+.... ...++++.|+..+ .....+...++. +.+|+|++|
T Consensus 2 ~viivEg~~d~~~l~~~~~~-~~~~~~~~G~~~~------------~~~~~~~~~~~~-------------~~~v~i~~D 55 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGY-GGAVVALGGHALN------------KTRELLKRLLGE-------------AKEVIIATD 55 (83)
T ss_pred EEEEEecHHHHHHHHHHcCC-CEEEEEEccEEcH------------HHHHHHHHHhcC-------------CCEEEEEcC
Confidence 58999999977666555443 3578899998876 112222222211 678999999
Q ss_pred CCCCCCchHHHHHHHHH
Q 007003 580 ADVDGAHIRTLLLTFFY 596 (622)
Q Consensus 580 aDvDGsHI~~Llltff~ 596 (622)
.|..|..+...+.....
T Consensus 56 ~D~~g~~~~~~~~~~~~ 72 (83)
T cd00188 56 ADREGEAIALRLLELLK 72 (83)
T ss_pred CChhHHHHHHHHHHHHH
Confidence 99999866655554443
No 100
>PF14501 HATPase_c_5: GHKL domain
Probab=91.46 E-value=1.4 Score=38.40 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=48.1
Q ss_pred ChhhHHHHHHHHhhHHhhhcCC-CCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGY-ASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~-~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
-.|..++--++|||++++..-. ...|.|.+.. +| .|+|.+.-.. +. . .+.
T Consensus 4 ~dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~---~~---~----------~~~---------- 57 (100)
T PF14501_consen 4 LDLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK---EI---E----------KLE---------- 57 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC---cc---c----------ccc----------
Confidence 3578899999999999987533 6678888884 45 5677776322 11 0 000
Q ss_pred ceeeecCcccccchhhhhccCce
Q 007003 181 GYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~ 203 (622)
..+..++-||.|++.+..+-++.
T Consensus 58 ~~~~~~~~~G~GL~~v~~i~~~y 80 (100)
T PF14501_consen 58 SSSSKKKGHGIGLKNVKKILEKY 80 (100)
T ss_pred ccccCCCCCCcCHHHHHHHHHHC
Confidence 01224567999999999886544
No 101
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=91.29 E-value=0.32 Score=52.25 Aligned_cols=45 Identities=29% Similarity=0.486 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCC
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDL 153 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~ 153 (622)
-|+.++.|++.|-+-++ .|+.|.|.+..++ ..+|+|||.|+|.+.
T Consensus 410 TLyRl~QE~LNNI~KHA---~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~~ 457 (497)
T COG3851 410 TLYRLCQELLNNICKHA---DASAVTIQLWQQDERLMLEIEDDGSGLPPGS 457 (497)
T ss_pred eHHHHHHHHHHHHHhcc---ccceEEEEEeeCCcEEEEEEecCCcCCCCCC
Confidence 68999999999998885 4788999998766 479999999999873
No 102
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=90.85 E-value=0.44 Score=52.59 Aligned_cols=78 Identities=28% Similarity=0.490 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
--+..++--++.||+|++.- +++.|+|+...+ + .|-|.|||.|-|.+..+ -.|+ ..+++|-
T Consensus 563 v~ieQVlvNl~~NaldA~~h-~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~d--------kLl~-PFttsK~----- 627 (673)
T COG4192 563 VSIEQVLVNLIVNALDASTH-FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVD--------KLLT-PFTTSKE----- 627 (673)
T ss_pred hhHHHHHHHHHHHHHhhhcc-CCceEEEEeecCcccceEEEEecCCCCCchhHHH--------HhcC-Ccccccc-----
Confidence 46789999999999998643 357888888752 2 79999999999987533 2333 2344442
Q ss_pred ceeeecCcccccchhhhhccCce
Q 007003 181 GYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~ 203 (622)
-| -|+|+|.+-.+-+.+
T Consensus 628 -----vg-LGlGLSIsqSlmeqm 644 (673)
T COG4192 628 -----VG-LGLGLSISQSLMEQM 644 (673)
T ss_pred -----cc-cccchhHHHHHHHHh
Confidence 12 288999887775554
No 103
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=90.52 E-value=0.51 Score=50.14 Aligned_cols=63 Identities=29% Similarity=0.368 Sum_probs=46.5
Q ss_pred hhhHhhCCCeeeccCC-----------CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCC
Q 007003 88 LEAVRKRPAMYIGSTG-----------PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDL 153 (622)
Q Consensus 88 ~E~Vr~RP~mYiGs~~-----------~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~ 153 (622)
+|..+.||||-|---. ...|+.++.|-|.|-=-+ +| +++|.|-+..++ ..+|.|||+|.|+..
T Consensus 330 ~~~f~~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErH--a~-Atrv~ill~~~~d~vql~vrDnG~GF~~~~ 406 (459)
T COG4564 330 LEDFKERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERH--AG-ATRVTILLQQMGDMVQLMVRDNGVGFSVKE 406 (459)
T ss_pred HHHhhhccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhh--cC-CeEEEEEeccCCcceEEEEecCCCCccchh
Confidence 4666789998874321 146788888888775433 34 899999998654 689999999999974
No 104
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=89.19 E-value=1.2 Score=50.71 Aligned_cols=161 Identities=18% Similarity=0.192 Sum_probs=88.8
Q ss_pred HHHHHHHhhHHhhhc-------C-C--CCe--EEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCC-C
Q 007003 110 LVYEILDNAVDEAQA-------G-Y--ASN--IEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK-F 175 (622)
Q Consensus 110 lv~EildNaiDe~~~-------g-~--~~~--I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~k-f 175 (622)
.++|+|-||-|+..- + . ... |.++-+. ++.+++.|.|.||.-+.... -+=|-...|+| |
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvn-------nLGTIAkSGtK~F 133 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLVN-------NLGTIAKSGSKAF 133 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHHh-------hhhhhhhcccHHH
Confidence 468899888887631 1 1 233 4444443 56899999999998764211 01111122222 1
Q ss_pred CCC---CCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeCcc
Q 007003 176 GGS---SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQ 251 (622)
Q Consensus 176 ~~~---~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~ 251 (622)
-.. +..-..--|+.|||.-+...++.+..|+++.+. ..|..++..|..-. ... ...-.+||+|...---
T Consensus 134 mealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~-v~~-----~~~~~rGTki~l~lKe- 206 (656)
T KOG0019|consen 134 LEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYE-IAE-----ASGLRTGTKIVIHLKE- 206 (656)
T ss_pred HHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceE-Eee-----ccCccccceEEeeehh-
Confidence 000 001122459999999999999999999987543 45666665543321 111 2236799999866110
Q ss_pred ccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCC
Q 007003 252 VFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 287 (622)
Q Consensus 252 iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~ 287 (622)
-+. .-.+.++|.+.+..... +=+..|+|+.++.
T Consensus 207 ~~~--ey~ee~rikeiVKK~S~-Fv~yPI~l~~ek~ 239 (656)
T KOG0019|consen 207 GDC--EFLEEKRIKEVVKKYSN-FVSYPIYLNGERV 239 (656)
T ss_pred hhh--hhccHhHHHHHHhhccc-cccccchhhhhhh
Confidence 000 11344556655555442 2234567766654
No 105
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.72 E-value=0.44 Score=56.25 Aligned_cols=84 Identities=29% Similarity=0.388 Sum_probs=47.9
Q ss_pred HHHHhhHHhhh--------cCC--CCeEEEEEeC-CC--eEEEEECCCCccCCCcC----CCCcchHHHh-------hhh
Q 007003 113 EILDNAVDEAQ--------AGY--ASNIEVALLA-DN--SVSVADNGRGIPIDLHP----ATNKSALETV-------LTV 168 (622)
Q Consensus 113 EildNaiDe~~--------~g~--~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~----~~g~~~~e~v-------~t~ 168 (622)
.+|-||+|+-+ +|. ..+|.+.-.. +| .|+|+|||+||..+..- +.|.-..+.. ...
T Consensus 439 HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~ 518 (716)
T COG0643 439 HLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILN 518 (716)
T ss_pred HHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHH
Confidence 46789999976 242 4567777664 44 69999999999988421 1222222211 011
Q ss_pred ccCCCCCCCCCCceeeecCcccccchhhhh
Q 007003 169 LHAGGKFGGSSSGYSVSGGLHGVGLSVVNA 198 (622)
Q Consensus 169 lhag~kf~~~~~~y~~sgG~~GvGls~vNa 198 (622)
|..-.-|...+..--+|| +|||+=||.-
T Consensus 519 LIF~PGFSTa~~VtdvSG--RGVGMDVVk~ 546 (716)
T COG0643 519 LIFAPGFSTAEQVTDVSG--RGVGMDVVKT 546 (716)
T ss_pred HHhcCCCCcchhhhcccC--CccCHHHHHH
Confidence 112233433222234455 8999998864
No 106
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=87.49 E-value=1.1 Score=51.55 Aligned_cols=100 Identities=23% Similarity=0.369 Sum_probs=67.7
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC--CC-eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA--DN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~--dg-~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.=|-.++.-++.||+-....+ ...|.|..+. |. .++|.|||-||...... -.=.+|-++|+...|.
T Consensus 635 ~~l~qv~~NLi~Naik~~~~e-~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~-----riF~iFqRl~s~~~y~----- 703 (750)
T COG4251 635 TQLGQVFQNLIANAIKFGGPE-NPDIEISAERQEDEWTFSVRDNGIGIDPAYFE-----RIFVIFQRLHSRDEYL----- 703 (750)
T ss_pred HHHHHHHHHHHhhheecCCCC-CCceEEeeeccCCceEEEecCCCCCcCHHHHH-----HHHHHHHhcCchhhhc-----
Confidence 345678888888888774333 5789999884 44 79999999999887532 1335788888776653
Q ss_pred eeeecCcccccchhhhhccCce----EEEEE-eCCEEEEEEEeCC
Q 007003 182 YSVSGGLHGVGLSVVNALSESL----EVTVW-RDGMEYHQKYSRG 221 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~~~----~V~t~-r~g~~y~q~f~~G 221 (622)
| +|.|+.++-.+.+.- .|++. .+|..|.+..-.|
T Consensus 704 -----g-tG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~~ 742 (750)
T COG4251 704 -----G-TGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPVG 742 (750)
T ss_pred -----C-CCccHHHHHHHHHHhCceEEEeecCCCceeEEEEeecC
Confidence 3 799999988876543 34443 3445555554433
No 107
>cd00823 TopoIIB_Trans TopoIIB_Trans: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIB family of DNA topoisomerases similar to Sulfolobus shibatae topoisomerase VI (topoVI). The sole representative of the Type IIB family is topo VI. Topo VI enzymes are heterotetramers found in archaea and plants. S. shibatae topoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes.
Probab=86.97 E-value=4.4 Score=38.57 Aligned_cols=87 Identities=17% Similarity=0.370 Sum_probs=54.9
Q ss_pred eEEEEEEEecCC---CCCceeeeeeCcee-ccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEE
Q 007003 330 ITIDLALQWCSD---AYSDTMLGYANSIR-TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 405 (622)
Q Consensus 330 ~~veval~~s~~---~~~~~~~SFVN~I~-T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvs 405 (622)
..||+|+.|--+ ...-.++=|+|-|| ..+.|. .++++++..+ .+.+.. +.... ..-+.+||+
T Consensus 33 FiVEagiayGG~~~~~~~~~i~RfANRVPLlf~~g~------cvit~av~~i-~W~~Yg------i~~~~-~~p~~v~Vh 98 (151)
T cd00823 33 FIVEVGIAYGGDIPADEKVELLRFANRVPLLYDAGA------CVITKAVESI-NWKRYG------LEQPG-QGPLVVLVH 98 (151)
T ss_pred eEEEEeeeecCccCCCCCceEEEEcccCceeecccc------hHHHHHHHhC-ChhhcC------cCCCC-CCCEEEEEE
Confidence 458889888522 11257899999998 345555 3455555443 222210 11111 246789999
Q ss_pred EeecCCCCCCcccccccC-cccccch
Q 007003 406 VRVPNPEFEGQTKTRLGN-PEVRKVV 430 (622)
Q Consensus 406 v~i~nP~FegQTK~kL~n-~ev~~~v 430 (622)
+--.+-.|.|-.|+..++ ||+..-+
T Consensus 99 i~St~VPfts~~KeaIadvpEI~~EI 124 (151)
T cd00823 99 VASTKVPFTSEGKEAIADIPEIEEEI 124 (151)
T ss_pred EeecCCCcCCcchhhhcCCHHHHHHH
Confidence 999999999999999886 4444333
No 108
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=83.71 E-value=1.8 Score=48.26 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=31.7
Q ss_pred HHHHHHHhhHHhhhcCC--CCeEEEEEeC-CC--eEEEEECCCCccCCC
Q 007003 110 LVYEILDNAVDEAQAGY--ASNIEVALLA-DN--SVSVADNGRGIPIDL 153 (622)
Q Consensus 110 lv~EildNaiDe~~~g~--~~~I~V~i~~-dg--~IsV~DnGrGIP~~~ 153 (622)
++.=+|+||+-+..... ...|.|.+.. |+ .|.|+|||+||+.+.
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~~ 508 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPDE 508 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCCC
Confidence 56788999999976421 3345555553 33 699999999999963
No 109
>PF09239 Topo-VIb_trans: Topoisomerase VI B subunit, transducer; InterPro: IPR015320 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents subunit B of topoisomerase VI, an ATP-dependent type IIB enzyme. Members of this family adopt a structure consisting of a four-stranded beta-sheet backed by three alpha-helices, the last of which is over 50 amino acids long and extends from the body of the protein by several turns. This domain has been proposed to mediate intersubunit communication by structurally transducing signals from the ATP binding and hydrolysis domains to the DNA binding and cleavage domains of the gyrase holoenzyme []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0005694 chromosome; PDB: 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A 2Q2E_B.
Probab=82.54 E-value=9.7 Score=36.60 Aligned_cols=85 Identities=16% Similarity=0.350 Sum_probs=51.1
Q ss_pred eEEEEEEEecCCC---CCceeeeeeCcee-ccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEE
Q 007003 330 ITIDLALQWCSDA---YSDTMLGYANSIR-TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 405 (622)
Q Consensus 330 ~~veval~~s~~~---~~~~~~SFVN~I~-T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvs 405 (622)
..||+|+.|--+. ..-.++-|+|-|+ ..+.|. .++++++..+ .+.+. ++...+ ..-+.++|+
T Consensus 42 FiVEagiayGG~~~~~~~~~ilRfANRVPLly~~g~------cvit~av~~i-~W~~Y------~l~~~~-~~p~~v~Vh 107 (160)
T PF09239_consen 42 FIVEAGIAYGGEIPPEGKIEILRFANRVPLLYDQGS------CVITKAVKSI-NWKRY------GLDQPG-NGPLVVFVH 107 (160)
T ss_dssp EEEEEEEEESTTS-SCSS-EEEEEETTEEE-STGCC------SHHHHHHHHS--GCCC------T--SSS--CSEEEEEE
T ss_pred EEEEEehhhccCCCCCCCceEEEEccCCceeecCCc------hHHHHHHHhC-Cchhc------CcCCCC-CCCEEEEEE
Confidence 5689999886221 2347899999998 445555 4567777653 33322 111111 346799999
Q ss_pred EeecCCCCCCcccccccC-ccccc
Q 007003 406 VRVPNPEFEGQTKTRLGN-PEVRK 428 (622)
Q Consensus 406 v~i~nP~FegQTK~kL~n-~ev~~ 428 (622)
+--.+-.|.|--|+...+ +|+..
T Consensus 108 i~ST~VPfts~~KeaIa~~pEI~~ 131 (160)
T PF09239_consen 108 IASTKVPFTSEGKEAIADVPEIEK 131 (160)
T ss_dssp EEESS--BSSTTSSSB---HHHHH
T ss_pred EeecccCccccchhhhcCcHHHHH
Confidence 999999999999999883 44443
No 110
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=82.51 E-value=1.3 Score=49.66 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhhHHhhhc--CCCCeEEEEEeC-CC--eEEEEECCCCccCCC
Q 007003 106 GLHHLVYEILDNAVDEAQA--GYASNIEVALLA-DN--SVSVADNGRGIPIDL 153 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~--g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~ 153 (622)
-+.-++-=+||||+-+... .....|.|.+.. ++ .++|.|||.||.-..
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~ 402 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEK 402 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhH
Confidence 3456778899999999763 235577777764 45 588999999998753
No 111
>PRK04017 hypothetical protein; Provisional
Probab=75.75 E-value=0.55 Score=43.82 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=25.6
Q ss_pred CCCceEEeeCCCCCCCchHHHHHHHHHhh
Q 007003 570 RYHKIIILTDADVDGAHIRTLLLTFFYRY 598 (622)
Q Consensus 570 RY~kIiImTDaDvDGsHI~~Llltff~~~ 598 (622)
.+..|||+||.|-=|..|+..|...|..+
T Consensus 64 ~~r~VIILTD~D~~GekIr~~l~~~l~~~ 92 (132)
T PRK04017 64 RGKEVIILTDFDRKGEELAKKLSEYLQGY 92 (132)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhC
Confidence 46789999999999999999998887664
No 112
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=75.40 E-value=23 Score=40.26 Aligned_cols=99 Identities=17% Similarity=0.362 Sum_probs=62.1
Q ss_pred eEEEEEEEecCCCC---CceeeeeeCceec-cCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHh-cccEEEE
Q 007003 330 ITIDLALQWCSDAY---SDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR-EGLTCII 404 (622)
Q Consensus 330 ~~veval~~s~~~~---~~~~~SFVN~I~T-~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~dir-egL~~vv 404 (622)
..||+|+.|--+.- .-.++=|+|-|+- .+.|. .++++++... .+.+.. + +++- .-+.++|
T Consensus 348 fiVE~~iayGg~~~~~~~~~i~RfaNrvPLl~~~g~------~~~t~~v~~i-~w~~Y~------~--~~~~~~p~~v~v 412 (488)
T TIGR01052 348 FIVEVGIAYGGNIGRRSEPEILRYANKVPLLYDAGS------CVLTKAVKSI-NWKRYG------I--RDFPSAPLVVLV 412 (488)
T ss_pred eEEEEeeecCCcCCCCCceeEEEecccCceeecccc------cHHHHHHHhC-ChhhcC------C--CCCCCCCEEEEE
Confidence 56899998862211 2468999999983 44554 4566666543 222221 1 1122 2478999
Q ss_pred EEeecCCCCCCcccccccC-cccccchhhhhh---HHHHHHHh
Q 007003 405 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLE 443 (622)
Q Consensus 405 sv~i~nP~FegQTK~kL~n-~ev~~~v~~~v~---~~l~~~l~ 443 (622)
++--.+-.|.|--|+..++ ||+..-|+.++. .+|..||.
T Consensus 413 hi~St~vPf~s~~Ke~ia~~~ei~~ei~~al~~~~r~L~~~l~ 455 (488)
T TIGR01052 413 NLASTNVPYTSTGKQSVADIPEIYNEIRLALMEVARRLRLYLS 455 (488)
T ss_pred EEeecCCCCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999964 565555544443 34555543
No 113
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=73.65 E-value=21 Score=41.91 Aligned_cols=99 Identities=14% Similarity=0.288 Sum_probs=63.6
Q ss_pred eEEEEEEEecCC---CC----CceeeeeeCceec-cCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhc-cc
Q 007003 330 ITIDLALQWCSD---AY----SDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVRE-GL 400 (622)
Q Consensus 330 ~~veval~~s~~---~~----~~~~~SFVN~I~T-~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~dire-gL 400 (622)
..||+|+.|--+ .. .-.++=|+|-||- .+.|. .++++++..+ .+.+.. +. +.-. -+
T Consensus 498 FiVE~giayGG~~~~~~~~~~~~~i~RfANrvPLly~~g~------c~~t~~v~~i-~W~~Y~------l~--~~~~~p~ 562 (659)
T PRK14867 498 FAVEVGLAYGGNAGRQGDEGRKMEIMRFSNHVPLLFDTSG------CGLTNAVKSV-NWRRYG------LR--SDEDAPI 562 (659)
T ss_pred EEEEEeeecCCcCCCCCccCCcceEEEeeccCceeecCcc------cHHHHHHHhC-ChhhcC------cC--CCCCCCE
Confidence 468999988632 11 2369999999984 34444 4566666543 222221 11 1112 37
Q ss_pred EEEEEEeecCCCCCCccccccc-----Ccccccchhhhhh---HHHHHHHh
Q 007003 401 TCIISVRVPNPEFEGQTKTRLG-----NPEVRKVVDQSVQ---EYLTEYLE 443 (622)
Q Consensus 401 ~~vvsv~i~nP~FegQTK~kL~-----n~ev~~~v~~~v~---~~l~~~l~ 443 (622)
+++|+|--.+-.|.|--|+.+. +||+..-++..+. ..|..||.
T Consensus 563 ~v~vhv~St~vPfts~~Keaia~~~~~~~eI~~Ei~lAl~~~~r~L~~~l~ 613 (659)
T PRK14867 563 TVFVNLISTHIPYTSAGKQAIACSEEENEEIFNEIRQALMICARELEKYIS 613 (659)
T ss_pred EEEEEEeecCCCCCCccHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998 6776666655543 35666654
No 114
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=72.24 E-value=31 Score=39.72 Aligned_cols=101 Identities=17% Similarity=0.369 Sum_probs=64.4
Q ss_pred eEEEEEEEecCCC---CCceeeeeeCcee-ccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEE
Q 007003 330 ITIDLALQWCSDA---YSDTMLGYANSIR-TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 405 (622)
Q Consensus 330 ~~veval~~s~~~---~~~~~~SFVN~I~-T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvs 405 (622)
..||+|+.|--+. ..-.++=|+|-|+ ..+.|. .++++++..+ .+.+..-+.. =..-+.++|+
T Consensus 353 fiVE~~iayGg~~~~~~~~~i~RfANrvPLl~~~g~------~~~t~~v~~i-~w~~Y~~~~~-------~~~p~~v~vh 418 (535)
T PRK04184 353 FIVEVGIAYGGEIPPDDKPELLRFANRVPLLYDEGS------CVITKAVESI-DWKRYGIEQP-------PQAPLVVLVH 418 (535)
T ss_pred eEEEEEeeecCCCCCCCCceEEEEccCCceeecCCc------cHHHHHHHhC-ChhhcCcCCC-------CCCCEEEEEE
Confidence 5689999885221 1237899999998 445555 4556666443 2322210000 0135689999
Q ss_pred EeecCCCCCCcccccccC-cccccchhhhhh---HHHHHHHhh
Q 007003 406 VRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLEL 444 (622)
Q Consensus 406 v~i~nP~FegQTK~kL~n-~ev~~~v~~~v~---~~l~~~l~~ 444 (622)
|--.+-.|.|--|+..++ ||+..-+...+. .+|..||.+
T Consensus 419 i~St~vP~~s~~Ke~ia~~~ei~~ei~~al~~~~r~L~~~l~~ 461 (535)
T PRK04184 419 VASTKVPYTSEGKEAIADVPEIEKEIRLALQEVARKLKKYLSR 461 (535)
T ss_pred EeecCCCCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 666655555543 356666653
No 115
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=68.22 E-value=31 Score=41.14 Aligned_cols=104 Identities=17% Similarity=0.359 Sum_probs=64.9
Q ss_pred eEEEEEEEecCCCC---CceeeeeeCceec-cCCccchHHHHHHHHHHHHHHH-hhccCCCCCCCCCCHHhHhc-ccEEE
Q 007003 330 ITIDLALQWCSDAY---SDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLG-KKSKTVKDKDISLSGEHVRE-GLTCI 403 (622)
Q Consensus 330 ~~veval~~s~~~~---~~~~~SFVN~I~T-~~GGTHv~g~~~al~~~ln~~~-kk~~~~k~~~~~l~~~dire-gL~~v 403 (622)
..||+|+.|--+-- .-.++=|+|-||- .+.|. .+++++++.+- +..++...+ +..+-. -+.++
T Consensus 542 FiVEagiAYGG~~~~~g~~~i~RfANRVPLly~~ga------c~iT~~v~~i~Wr~Ygl~q~~-----g~g~p~~P~~v~ 610 (795)
T PRK14868 542 FIVEAGIAYGGEIDSEGSVDVMRFANRVPLVYQRGA------CATTDVVKSIGWRNYGLDQPG-----GSGLPNGPAVIM 610 (795)
T ss_pred eEEEEEeecCCcCCCCCCceEEEecccCceeecccc------cHHHHHHHhCChhhcCcCCCC-----CCCCCCCCEEEE
Confidence 56899998862211 2368999999984 34444 35566665432 223332111 111122 37899
Q ss_pred EEEeecCCCCCCcccccccC-cccccchhhhhh---HHHHHHHhh
Q 007003 404 ISVRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLEL 444 (622)
Q Consensus 404 vsv~i~nP~FegQTK~kL~n-~ev~~~v~~~v~---~~l~~~l~~ 444 (622)
|+|--.|-.|.|-.|+.+.+ ||+..-++..+. ..|+.||.+
T Consensus 611 VhvaST~VPfts~sKeaIA~vpEI~~EI~lAl~~~aR~Lk~yl~k 655 (795)
T PRK14868 611 VHVASTNVPFTSESKDAIANVPEIEDEIELAIREAARELKSYLNK 655 (795)
T ss_pred EEEeecCCCCCCcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999975 666655555543 356666654
No 116
>PRK04031 DNA primase; Provisional
Probab=62.73 E-value=5.3 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=18.2
Q ss_pred CCCceEEeeCCCCCCCchHHHHHH
Q 007003 570 RYHKIIILTDADVDGAHIRTLLLT 593 (622)
Q Consensus 570 RY~kIiImTDaDvDGsHI~~Lllt 593 (622)
+-.+|++++|-|--|--|+--|+.
T Consensus 209 k~~~Vil~~DgD~aGe~I~k~l~~ 232 (408)
T PRK04031 209 KKKTVTAFLDGDRGGELILKELLQ 232 (408)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh
Confidence 356899999999999766554443
No 117
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=60.33 E-value=1.8 Score=40.22 Aligned_cols=28 Identities=43% Similarity=0.707 Sum_probs=23.4
Q ss_pred CCCCCceEEeeCCCCCCCchHHHHHHHH
Q 007003 568 ALRYHKIIILTDADVDGAHIRTLLLTFF 595 (622)
Q Consensus 568 ~LRY~kIiImTDaDvDGsHI~~Llltff 595 (622)
.++|..|||+||.|.=|.-||--|.-.|
T Consensus 52 ~~~~k~VIILTD~D~~Ge~Irk~l~~~l 79 (127)
T COG1658 52 AQKYKGVIILTDPDRKGERIRKKLKEYL 79 (127)
T ss_pred hhccCCEEEEeCCCcchHHHHHHHHHHh
Confidence 3578889999999999999998765444
No 118
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=59.96 E-value=0.82 Score=38.97 Aligned_cols=27 Identities=41% Similarity=0.655 Sum_probs=24.0
Q ss_pred CCceEEeeCCCCCCCchHHHHHHHHHh
Q 007003 571 YHKIIILTDADVDGAHIRTLLLTFFYR 597 (622)
Q Consensus 571 Y~kIiImTDaDvDGsHI~~Llltff~~ 597 (622)
+..|||+||.|-=|..|+.-+...+-.
T Consensus 45 ~~~VIiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 45 YRGVIILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhcc
Confidence 799999999999999999988877744
No 119
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=54.24 E-value=17 Score=30.53 Aligned_cols=32 Identities=16% Similarity=0.520 Sum_probs=25.7
Q ss_pred cccchhhhhhHHHHHHHhhC-HHHHHHHHHHHH
Q 007003 426 VRKVVDQSVQEYLTEYLELH-PDVLDSILSKSL 457 (622)
Q Consensus 426 v~~~v~~~v~~~l~~~l~~n-p~~~~~I~~k~~ 457 (622)
+...|...+...|++||++| |.+++.++++-+
T Consensus 35 lE~lvremLRPmLkeWLD~nLP~lVErlVr~EI 67 (73)
T PF10691_consen 35 LEDLVREMLRPMLKEWLDENLPGLVERLVREEI 67 (73)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56677788889999999999 888888776543
No 120
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=46.07 E-value=3.3 Score=34.75 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=13.8
Q ss_pred CCceEEeeCCCCCCCch
Q 007003 571 YHKIIILTDADVDGAHI 587 (622)
Q Consensus 571 Y~kIiImTDaDvDGsHI 587 (622)
+.+|||++|.|..|--.
T Consensus 46 ~~~Vii~~D~D~~G~~~ 62 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKA 62 (81)
T ss_dssp -SEEEEEEESSHHHHHH
T ss_pred CceEEEEeCcCHHHHHH
Confidence 58999999999988543
No 121
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=45.53 E-value=14 Score=34.50 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=22.8
Q ss_pred CCceEEeeCCCCCCCchHHHHHHHHH
Q 007003 571 YHKIIILTDADVDGAHIRTLLLTFFY 596 (622)
Q Consensus 571 Y~kIiImTDaDvDGsHI~~Llltff~ 596 (622)
...|||+||+|--|.+|--.+++++-
T Consensus 91 ~d~iiiAtD~DrEGE~I~~~i~~~~~ 116 (142)
T cd01028 91 ADEIVLATDPDREGELIAWEILEVLK 116 (142)
T ss_pred CCEEEEcCCCCcchHHHHHHHHHHhC
Confidence 46899999999999999988887764
No 122
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=40.40 E-value=46 Score=37.60 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhHHhhhcCC-CCeEEEEEeCCCeEEEEECCCCccCCC
Q 007003 108 HHLVYEILDNAVDEAQAGY-ASNIEVALLADNSVSVADNGRGIPIDL 153 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~g~-~~~I~V~i~~dg~IsV~DnGrGIP~~~ 153 (622)
..+++|+|.||+=+-.--. ...|.|.+.+| .|+|++.| |.|.+.
T Consensus 272 ~~alREai~NAv~HRDYs~~~~~v~I~iydD-RieI~NPG-gl~~gi 316 (467)
T COG2865 272 LEALREAIINAVIHRDYSIRGRNVHIEIYDD-RIEITNPG-GLPPGI 316 (467)
T ss_pred HHHHHHHHHHHHHhhccccCCCceEEEEECC-eEEEECCC-CCCCCC
Confidence 4689999999997643222 24888888866 89999988 677664
No 123
>PHA02540 61 DNA primase; Provisional
Probab=34.86 E-value=36 Score=36.87 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=33.1
Q ss_pred HHHHHHhCCCCCCCCCCcCCCCCC-ceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEE
Q 007003 549 QNLIRALGLGVKGEDFKKEALRYH-KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 611 (622)
Q Consensus 549 ~~li~alG~~~~~~~~~~~~LRY~-kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~ 611 (622)
.|-++.||+.+..+ ..||. +||++-|.| .| | +.. .|-++-|++.|+-.+.
T Consensus 238 ~naVAtlGTaLT~~-----~~~~~~~vvl~~D~D-a~-~-~at-----~r~~~~l~~~g~~v~v 288 (337)
T PHA02540 238 PNSIAITGGDLDLN-----EVPFKDTRVWVLDNE-PR-H-PDT-----IKRISKLIDAGEKVVI 288 (337)
T ss_pred ccceeeCccccCHh-----HhCccceEEEEECCc-hh-H-HHH-----HHHHHHHHHCCCeEEE
Confidence 46678888876433 34775 899999999 55 4 332 2456778888864433
No 124
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=34.10 E-value=47 Score=33.32 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=34.3
Q ss_pred CeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEE
Q 007003 96 AMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133 (622)
Q Consensus 96 ~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~ 133 (622)
+|..|++..+|-.+.|++=||-|||.+.+=.|.+|.+.
T Consensus 69 ~~~~G~~svpg~~k~FR~~Ld~ai~yAkalgC~rIHlm 106 (264)
T KOG4518|consen 69 DGFRGLASVPGAKKEFRKSLDTAIEYAKALGCCRIHLM 106 (264)
T ss_pred hhccCcccCCchHHHHHHHHHHHHHHHHHhCCceEEEe
Confidence 58999999999999999999999999988558888765
No 125
>PF14484 FISNA: Fish-specific NACHT associated domain
Probab=32.76 E-value=25 Score=29.45 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=12.0
Q ss_pred cceEEEEecCCCCC
Q 007003 498 ESEIFIVEGDSAGG 511 (622)
Q Consensus 498 ~~eL~lvEGDSA~G 511 (622)
-++||||||+|.+-
T Consensus 30 YTeLyIteg~~~~v 43 (73)
T PF14484_consen 30 YTELYITEGGSGEV 43 (73)
T ss_pred ceeeeEeccCCCcc
Confidence 48999999999863
No 126
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=30.00 E-value=33 Score=31.43 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.4
Q ss_pred CceEEeeCCCCCCCchHHHHHHHH
Q 007003 572 HKIIILTDADVDGAHIRTLLLTFF 595 (622)
Q Consensus 572 ~kIiImTDaDvDGsHI~~Llltff 595 (622)
.-|||.||+|..|.+|--.++..+
T Consensus 74 ~eiiiAtD~drEGe~i~~~i~~~~ 97 (123)
T cd03363 74 DEIYLATDPDREGEAIAWHLAEVL 97 (123)
T ss_pred CEEEEcCCCCcchHHHHHHHHHHc
Confidence 369999999999999988776664
No 127
>cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=27.58 E-value=52 Score=31.07 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.3
Q ss_pred CCceEEeeCCCCCCCchHHHHHHHHH
Q 007003 571 YHKIIILTDADVDGAHIRTLLLTFFY 596 (622)
Q Consensus 571 Y~kIiImTDaDvDGsHI~~Llltff~ 596 (622)
...||++||+|--|.+|--.++..+-
T Consensus 99 ad~ii~atD~DrEGE~I~~~i~~~~~ 124 (151)
T cd03362 99 ADEIVIATDADREGELIGREILEYAK 124 (151)
T ss_pred CCeEEEccCCCccccHHHHHHHHHhC
Confidence 46799999999999999888877664
No 128
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=26.68 E-value=83 Score=28.56 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=38.0
Q ss_pred eeeccCCCChh--------hHHHHHHHHhhHHh-------hh--cCCCCeEEEEEeCCCeEEEEECCCCccCCCcC
Q 007003 97 MYIGSTGPRGL--------HHLVYEILDNAVDE-------AQ--AGYASNIEVALLADNSVSVADNGRGIPIDLHP 155 (622)
Q Consensus 97 mYiGs~~~~gL--------~~lv~EildNaiDe-------~~--~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~ 155 (622)
-|+||+..... .+++.+.+.....+ .. ......|.+.|..+ .|.|.|.-.+-.+..||
T Consensus 4 kYLGs~~V~~~~~~~~~~g~~~v~~ai~~~~~~~~~~~~~~~~~~~~~~~V~l~vs~~-gI~v~~~~t~~~l~~~~ 78 (140)
T PF00640_consen 4 KYLGSVEVSSSRRGDKSRGSDVVREAIQRLKAEKIAKSKKSKSNKKKPQKVTLNVSSD-GIKVIDPDTGEVLMSHP 78 (140)
T ss_dssp EEEEEEEESSSSSTCHHHHHHHHHHHHHHHHHHCCCSHHHHHTTTSTSEEEEEEEETT-EEEEEETTTTCEEEEEE
T ss_pred EEEEEEEECCccCCCcchhHHHHHHHHHHHHhhhhhhhhccccccccCeEEEEEEcCC-eEEEecCccccccccCC
Confidence 59999875544 45666666666655 11 23456677777766 58899887777776665
No 129
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=25.00 E-value=48 Score=32.53 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=21.1
Q ss_pred CCCceEEeeCCCCCCCchHHHHHHH
Q 007003 570 RYHKIIILTDADVDGAHIRTLLLTF 594 (622)
Q Consensus 570 RY~kIiImTDaDvDGsHI~~Llltf 594 (622)
...-|||+||+|-=|-.||--|.-.
T Consensus 46 ~~rgVIIfTDpD~~GekIRk~i~~~ 70 (174)
T TIGR00334 46 KKQGVIILTDPDFPGEKIRKKIEQH 70 (174)
T ss_pred hcCCEEEEeCCCCchHHHHHHHHHH
Confidence 4667999999999999999877543
No 130
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.69 E-value=82 Score=32.95 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=27.0
Q ss_pred hhhcCCCCeEEEEEeCCC-eEEEEECCCCccCCC
Q 007003 121 EAQAGYASNIEVALLADN-SVSVADNGRGIPIDL 153 (622)
Q Consensus 121 e~~~g~~~~I~V~i~~dg-~IsV~DnGrGIP~~~ 153 (622)
++.+|.++.|+|.=++|. -++|.|||-|--.-.
T Consensus 121 AHvkGq~kEv~v~KsedalGlTITDNG~GyAFIK 154 (334)
T KOG3938|consen 121 AHVKGQAKEVEVVKSEDALGLTITDNGAGYAFIK 154 (334)
T ss_pred hhhcCcceeEEEEecccccceEEeeCCcceeeeE
Confidence 567788999999988776 599999999876643
No 131
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=22.57 E-value=44 Score=28.95 Aligned_cols=58 Identities=38% Similarity=0.558 Sum_probs=37.0
Q ss_pred EEEEecCCCCCc----ccc-c--CCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCc
Q 007003 501 IFIVEGDSAGGS----AKQ-G--RDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 573 (622)
Q Consensus 501 L~lvEGDSA~Gs----ak~-g--Rdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~k 573 (622)
.+||||+|=-.. ++. + .+...-.|.|..|| |+... ..++..+|. +
T Consensus 6 vIlVEG~tE~~~l~~~~~~~~~~~~~~~i~ii~~gG~--~~~~~-----------~~ll~~~~i---------------~ 57 (97)
T cd01026 6 VILVEGDSEEILLPALAKKLGLDLDEAGISIIPVGGK--NFKPF-----------IKLLNALGI---------------P 57 (97)
T ss_pred EEEEecHHHHHHHHHHHHHhCCCHHHCCEEEEEeCCc--chHHH-----------HHHHHHcCC---------------C
Confidence 689999997532 111 2 23344577888886 55433 245555553 5
Q ss_pred eEEeeCCCCCCCc
Q 007003 574 IIILTDADVDGAH 586 (622)
Q Consensus 574 IiImTDaDvDGsH 586 (622)
+.+++|.|..+.+
T Consensus 58 ~~vi~D~D~~~~~ 70 (97)
T cd01026 58 VAVLTDLDAKRNE 70 (97)
T ss_pred EEEEEeCCCCCCc
Confidence 7889999998865
No 132
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.11 E-value=1.4e+02 Score=26.65 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=12.9
Q ss_pred CCcccccccCcccccchhhhhhHHHHHHHh
Q 007003 414 EGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 443 (622)
Q Consensus 414 egQTK~kL~n~ev~~~v~~~v~~~l~~~l~ 443 (622)
.|||||. .+.+.+-+.+.+..|-+
T Consensus 18 pGQTKEQ------TKLIAqGIeKGIa~YKK 41 (103)
T PF11169_consen 18 PGQTKEQ------TKLIAQGIEKGIAEYKK 41 (103)
T ss_pred CCCCHHH------HHHHHHHHHHHHHHHHH
Confidence 4788875 22344444555555543
Done!