Query 007003
Match_columns 622
No_of_seqs 231 out of 1578
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 2E-142 6E-147 1272.1 32.2 518 75-620 5-568 (1177)
2 3lnu_A Topoisomerase IV subuni 100.0 2E-109 9E-114 891.2 36.8 386 75-476 22-408 (408)
3 1ei1_A DNA gyrase B, GYRB; ATP 100.0 2E-105 8E-110 862.1 38.6 387 75-472 2-390 (391)
4 1s16_A Topoisomerase IV subuni 100.0 3E-102 1E-106 837.8 40.7 381 75-471 3-387 (390)
5 1kij_A DNA gyrase subunit B; t 100.0 7.3E-96 3E-100 789.4 36.1 386 76-472 2-389 (390)
6 1pvg_A DNA topoisomerase II; G 100.0 4.7E-94 1.6E-98 777.8 31.5 361 75-467 10-416 (418)
7 1zxm_A TOPO IIA ATPase, DNA to 100.0 3.3E-94 1.1E-98 775.8 28.1 361 79-463 3-394 (400)
8 3cwv_A DNA gyrase, B subunit, 100.0 8.6E-88 3E-92 720.5 29.3 344 84-460 8-362 (369)
9 4duh_A DNA gyrase subunit B; s 100.0 1.6E-65 5.6E-70 511.7 19.6 216 76-301 4-220 (220)
10 3k9f_C DNA topoisomerase 4 sub 100.0 5.2E-66 1.8E-70 513.9 9.1 148 472-620 21-168 (268)
11 4emv_A DNA topoisomerase IV, B 100.0 1.2E-63 4.2E-68 499.5 17.4 218 74-301 8-226 (226)
12 3nuh_B DNA gyrase subunit B; t 100.0 4E-64 1.4E-68 528.2 9.0 153 468-620 3-155 (420)
13 3m4i_A DNA gyrase subunit B; G 100.0 4.6E-60 1.6E-64 466.6 8.7 132 488-620 9-140 (242)
14 2xkj_E Topoisomerase IV; type 100.0 2.4E-59 8.1E-64 529.6 7.9 162 454-620 2-163 (767)
15 3ttz_A DNA gyrase subunit B; p 100.0 1.2E-55 4E-60 434.4 15.9 197 77-303 2-198 (198)
16 3fv5_A DNA topoisomerase 4 sub 100.0 2.5E-54 8.6E-59 426.3 19.6 201 87-299 1-201 (201)
17 2xcs_B DNA gyrase subunit B, D 100.0 6E-54 2.1E-58 480.4 6.5 134 481-615 3-136 (692)
18 3l4j_A DNA topoisomerase 2; to 100.0 3E-53 1E-57 475.1 7.2 137 482-619 4-147 (757)
19 3qx3_A DNA topoisomerase 2-bet 100.0 9.3E-53 3.2E-57 471.6 8.8 136 482-620 34-180 (803)
20 2q2e_B Type 2 DNA topoisomeras 100.0 3.6E-40 1.2E-44 371.9 5.6 304 80-443 11-334 (621)
21 3na3_A DNA mismatch repair pro 99.9 2.8E-26 9.5E-31 242.8 20.6 284 79-414 6-305 (348)
22 3h4l_A DNA mismatch repair pro 99.9 4.9E-26 1.7E-30 242.8 20.8 283 81-414 5-328 (367)
23 1b63_A MUTL; DNA mismatch repa 99.9 1.1E-25 3.9E-30 238.0 18.8 244 81-358 4-267 (333)
24 2zbk_B Type 2 DNA topoisomeras 99.9 2.3E-27 7.7E-32 264.3 4.1 281 80-412 5-310 (530)
25 1h7s_A PMS1 protein homolog 2; 99.9 8.5E-24 2.9E-28 226.0 19.3 284 80-414 13-333 (365)
26 1mu5_A Type II DNA topoisomera 99.8 1.1E-19 3.8E-24 200.1 22.5 183 80-285 6-209 (471)
27 3t0h_A Heat shock protein HSP 99.2 1E-10 3.5E-15 117.0 11.5 161 107-285 33-215 (228)
28 3o0i_A HSP90AA1 protein; HSP90 99.1 1.5E-10 5.2E-15 117.3 11.8 160 108-285 62-243 (256)
29 2ior_A Chaperone protein HTPG; 99.1 1.6E-10 5.6E-15 116.1 11.5 151 107-276 48-227 (235)
30 1y4s_A Chaperone protein HTPG; 99.1 4.4E-09 1.5E-13 117.6 20.5 154 107-280 28-210 (559)
31 2wer_A ATP-dependent molecular 99.0 1.5E-09 5.3E-14 107.9 13.0 160 108-286 28-211 (220)
32 2ioq_A Chaperone protein HTPG; 99.0 4.5E-09 1.5E-13 118.9 16.7 155 108-280 29-210 (624)
33 2gqp_A Endoplasmin; GRP94, HSP 99.0 3.1E-09 1E-13 106.9 12.8 164 107-286 33-221 (236)
34 1yc1_A HSP 86, heat shock prot 98.9 5.3E-09 1.8E-13 106.8 13.2 161 106-286 68-252 (264)
35 2o1u_A Endoplasmin; GRP94, HSP 98.8 7.4E-08 2.5E-12 109.5 17.1 159 108-284 47-232 (666)
36 3peh_A Endoplasmin homolog; st 98.7 2E-07 6.7E-12 95.5 15.3 160 108-286 48-232 (281)
37 3nmq_A Heat shock protein HSP 98.7 7.4E-08 2.5E-12 96.6 11.1 159 108-286 41-223 (239)
38 1qy5_A Endoplasmin; GRP94, NEC 98.7 4.7E-08 1.6E-12 100.0 9.5 163 108-286 30-217 (269)
39 2cg9_A ATP-dependent molecular 98.6 3.2E-07 1.1E-11 104.4 14.1 158 108-282 28-207 (677)
40 3ied_A Heat shock protein; HSP 98.2 4.3E-06 1.5E-10 84.2 10.0 129 129-272 120-260 (272)
41 1th8_A Anti-sigma F factor; SP 98.0 2.4E-05 8.3E-10 71.1 9.4 94 105-218 38-136 (145)
42 3a0y_A Sensor protein; ATP-LID 97.8 4.4E-05 1.5E-09 69.0 8.1 77 103-201 44-123 (152)
43 3jz3_A Sensor protein QSEC; he 97.7 2.8E-05 9.7E-10 74.7 5.3 79 105-203 116-194 (222)
44 1id0_A PHOQ histidine kinase; 97.7 0.00012 4.2E-09 66.2 9.4 79 103-203 41-122 (152)
45 3ehg_A Sensor kinase (YOCF pro 97.7 6.8E-05 2.3E-09 66.7 7.3 46 105-153 39-87 (128)
46 3sl2_A Sensor histidine kinase 97.7 8.1E-05 2.8E-09 69.7 7.9 85 103-203 40-129 (177)
47 1ysr_A Sensor-type histidine k 97.7 0.00013 4.4E-09 66.2 8.7 81 103-203 43-126 (150)
48 3zxo_A Redox sensor histidine 97.7 6.7E-05 2.3E-09 66.3 6.6 45 105-152 42-88 (129)
49 2e0a_A Pyruvate dehydrogenase 97.6 9.3E-05 3.2E-09 79.1 8.8 92 104-203 228-327 (394)
50 1bxd_A ENVZ(290-450), protein 97.6 0.00011 3.7E-09 67.6 7.0 81 103-203 44-127 (161)
51 2q8g_A [pyruvate dehydrogenase 97.6 0.00012 3.9E-09 78.7 8.2 92 104-203 241-340 (407)
52 3zxq_A Hypoxia sensor histidin 97.5 0.00013 4.3E-09 64.1 6.0 45 105-152 38-84 (124)
53 1gkz_A [3-methyl-2-oxobutanoat 97.5 0.00022 7.6E-09 75.9 9.0 92 104-203 236-350 (388)
54 2btz_A Pyruvate dehydrogenase 97.5 0.00016 5.5E-09 77.2 7.8 91 104-203 229-327 (394)
55 1r62_A Nitrogen regulation pro 97.5 0.00012 3.9E-09 66.7 5.6 80 103-203 45-137 (160)
56 1y8o_A [pyruvate dehydrogenase 97.5 0.00011 3.8E-09 79.3 6.3 92 104-203 251-351 (419)
57 4ew8_A Sensor protein DIVL; si 97.4 0.00023 7.8E-09 70.7 7.7 78 104-203 153-233 (268)
58 2c2a_A Sensor histidine kinase 97.4 0.00026 8.9E-09 70.1 7.9 87 103-203 135-225 (258)
59 3ehh_A Sensor kinase (YOCF pro 97.4 0.0002 6.8E-09 68.9 6.5 45 106-153 130-177 (218)
60 3d36_A Sporulation kinase B; G 97.2 0.00039 1.3E-08 67.6 6.5 80 103-203 120-202 (244)
61 3a0r_A Sensor protein; four he 97.2 0.00029 1E-08 72.4 5.7 75 105-201 243-320 (349)
62 1b3q_A Protein (chemotaxis pro 97.1 0.0005 1.7E-08 73.3 6.8 48 106-153 106-166 (379)
63 1i58_A Chemotaxis protein CHEA 97.1 0.00045 1.5E-08 65.3 5.7 48 106-153 47-107 (189)
64 3ke6_A Protein RV1364C/MT1410; 96.6 0.0039 1.3E-07 66.8 8.8 84 106-220 297-385 (399)
65 4fpp_A Phosphotransferase; fou 96.4 0.0026 9E-08 63.3 4.9 76 106-201 146-224 (247)
66 2zbk_B Type 2 DNA topoisomeras 84.3 5.1 0.00017 44.4 11.4 100 330-444 350-457 (530)
67 1ixm_A SPO0B, protein (sporula 82.4 1.3 4.4E-05 42.5 5.0 28 126-153 129-161 (192)
68 2q2e_B Type 2 DNA topoisomeras 57.1 27 0.00092 39.4 8.8 93 330-433 353-451 (621)
69 1t6t_1 Putative protein; struc 35.7 8.9 0.00031 33.9 0.4 27 570-596 60-87 (118)
70 3hqc_A Tensin-like C1 domain-c 30.3 36 0.0012 31.5 3.5 48 97-147 19-70 (157)
71 1wvh_A Tensin, tensin1; beta s 25.5 58 0.002 29.3 3.9 50 97-149 7-60 (134)
72 2fcj_A Small toprim domain pro 24.2 16 0.00053 32.4 -0.1 26 570-595 49-74 (119)
73 4h62_V Mediator of RNA polymer 21.6 75 0.0026 20.5 2.7 18 108-125 11-28 (31)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-142 Score=1272.14 Aligned_cols=518 Identities=25% Similarity=0.383 Sum_probs=428.1
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCC-----------------------hhhHHHHHHHHhhHHhhhcCC-CCeE
Q 007003 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----------------------GLHHLVYEILDNAVDEAQAGY-ASNI 130 (622)
Q Consensus 75 ~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~-----------------------gL~~lv~EildNaiDe~~~g~-~~~I 130 (622)
..|.+++||+|+++||||||||||||||+.. |||||||||||||+||+++|+ |+.|
T Consensus 5 ~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I 84 (1177)
T 4gfh_A 5 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 84 (1177)
T ss_dssp --CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeE
Confidence 4577889999999999999999999999865 999999999999999999997 6899
Q ss_pred EEEEe-CCCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEE-
Q 007003 131 EVALL-ADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW- 208 (622)
Q Consensus 131 ~V~i~-~dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~- 208 (622)
+|+|+ +||+|+|+|||||||+++||++|+|++|+|||+||||||||++ +|++|||+||||+|||||||++|.|+|+
T Consensus 85 ~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 85 DVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETAD 162 (1177)
T ss_dssp EEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEE
Confidence 99999 5999999999999999999999999999999999999999988 9999999999999999999999998885
Q ss_pred -eCCEEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCC---CcEEEEee
Q 007003 209 -RDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNP---KLTIALRK 284 (622)
Q Consensus 209 -r~g~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnp---gl~I~l~d 284 (622)
|+|+.|+|+|++|+++.+++.+. ....+++||+|+||||+++|++. .|+++.+..|++++|++|+ ++.+.+++
T Consensus 163 ~r~Gk~y~q~f~~g~~~~~~~~i~--~~~~~~tGT~V~F~PD~~iF~~~-~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g 239 (1177)
T 4gfh_A 163 LNVGQKYVQKWENNMSICHPPKIT--SYKKGPSYTKVTFKPDLTRFGMK-ELDNDILGVMRRRVYDINGSVRDINVYLNG 239 (1177)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEE--ECCSSCCCEEEEEEECHHHHTCS-SCCHHHHHHHHHHHHHHHHHSSSCEEEESS
T ss_pred EcCCEEEEEEEECCcccCCCCeee--cCCCCCCceEEEEEeCHHhcCCc-EeCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 78999999999999987765431 13345789999999999999864 6999999999999888875 56788887
Q ss_pred CCCCCCCCceeEEEeCCcHHHHHHHHccCCCCCC--------ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceec
Q 007003 285 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 356 (622)
Q Consensus 285 ~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~--------~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T 356 (622)
++. ..++|++|+.+|+..++..+...+ +...+..+..+.+||||++|+ +++ .+++||||+|+|
T Consensus 240 ~~~-------~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T 310 (1177)
T 4gfh_A 240 KSL-------KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIAT 310 (1177)
T ss_dssp CBC-------CCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEE
T ss_pred Cee-------EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeec
Confidence 653 467889999999988766543322 112233445566789999998 554 456799999999
Q ss_pred cCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhh-
Q 007003 357 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQ- 435 (622)
Q Consensus 357 ~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~- 435 (622)
++||||++||++||+++||+|+++.+. .+++++||||||++||||+|+||+|+||||+||+|+.........+.
T Consensus 311 ~~GGTHv~gfr~altr~in~~~~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~ 385 (1177)
T 4gfh_A 311 TMGGTHVNYITDQIVKKISEILKKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL 385 (1177)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCH
T ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchH
Confidence 999999999999999999999876543 46999999999999999999999999999999999865443333222
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCCC---CCCCCcceEEEEecCCCCCc
Q 007003 436 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGS 512 (622)
Q Consensus 436 ~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~~r~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gs 512 (622)
+.+..+++ .. |+++++.+++++++++++++..++|+.+ ..+ +||+||+ ++|+++||||||||||||||
T Consensus 386 ~~~~~~~~--~~----i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGs 456 (1177)
T 4gfh_A 386 EYINKIMK--TD----LATRMFEIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSL 456 (1177)
T ss_dssp HHHHHHTT--SH----HHHHHHHHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHH
T ss_pred HHhhhhhh--HH----HHHHHHHHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhh
Confidence 23333332 23 4444444444444443444444444433 233 3999987 68999999999999999999
Q ss_pred ccccC---CCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHH
Q 007003 513 AKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 589 (622)
Q Consensus 513 ak~gR---dr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~ 589 (622)
||+|| +|+|||||||||||||||+++.+||++|+||++|++|||||++.+.+|+++||||||||||||||||+||||
T Consensus 457 Ak~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrt 536 (1177)
T 4gfh_A 457 AVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 536 (1177)
T ss_dssp HHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHH
T ss_pred HhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHH
Confidence 99998 889999999999999999999999999999999999999999655559999999999999999999999999
Q ss_pred HHHHHHHhhcHhhhh-cCcEEEEcCcEEEEEe
Q 007003 590 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVCF 620 (622)
Q Consensus 590 Llltff~~~~p~Li~-~G~v~~~~~Pl~kv~~ 620 (622)
|||||||||||+||+ +||||+|+||||||+.
T Consensus 537 LLltfF~r~~p~Lie~~G~vyia~pPLykv~~ 568 (1177)
T 4gfh_A 537 LIINFLESSFPGLLDIQGFLLEFITPIIKVSI 568 (1177)
T ss_dssp HHHHHHHHHSTTSTTSTTCEEEECCCSEEEEE
T ss_pred HHHHHHHHhChhhEeeCCEEEEEecceEEEEE
Confidence 999999999999999 9999999999999973
No 2
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=2.5e-109 Score=891.23 Aligned_cols=386 Identities=34% Similarity=0.593 Sum_probs=321.1
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCc
Q 007003 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (622)
Q Consensus 75 ~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h 154 (622)
++|++++||+|+|+|||||||||||||+++ ||+||||||||+||+++|+|+.|+|+|++||+|+|+|||||||++.|
T Consensus 22 ~~Y~a~~I~vL~glE~VRkRPgMYiGst~~---~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~~h 98 (408)
T 3lnu_A 22 TRYNAADIEVLSGLDPVKRRPGMYTDTARP---NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIH 98 (408)
T ss_dssp ------------CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCcCHhHceeccccHHHhcCCccEECCCCc---chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCcccc
Confidence 479999999999999999999999999976 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCC
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~ 234 (622)
|++|+|++|++||+|||||||+++ .|++||||||||+|+|||||++|+|+++|+|+.|+|+|++|+++.++..+..
T Consensus 99 ~~~~~~~~e~i~t~lhaggKfd~~--~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~ig~-- 174 (408)
T 3lnu_A 99 PEEKIPGVELILTRLHAGGKFNNR--NYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVGT-- 174 (408)
T ss_dssp TTTCSBHHHHHHHCC----------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEEEE--
T ss_pred cccCCcchheEEEecccCCCcCCC--ceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEecc--
Confidence 999999999999999999999988 9999999999999999999999999999999999999999999887754310
Q ss_pred CCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccCC
Q 007003 235 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314 (622)
Q Consensus 235 ~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~~ 314 (622)
....++||+|+|+||+++|.+ ..|+++.|.+||+++|++||||+|+|+|++.+ .+++|+|++||++||++++.++
T Consensus 175 ~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~----~~~~f~yegGi~~yv~~l~~~k 249 (408)
T 3lnu_A 175 VGKKNTGTRLRFWADPKYFDT-PKFNVRALRHLLRAKAVLCPGLTVKLHDEATG----EQDSWYFENGLRDYLKGEMAEH 249 (408)
T ss_dssp CCTTCCEEEEEEEECGGGSSC-SCCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEEECSSSHHHHHHHHTTTS
T ss_pred CcCCCCCcEEEEEECHHHhCC-CCcCHHHHHHHHHHHHhhcCCCEEEEEeccCC----ceeEEEcCchHHHHHHHHhcCC
Confidence 112579999999999999974 57999999999999999999999999999854 3679999999999999999988
Q ss_pred CCCCceeEEEeeccc-eEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCH
Q 007003 315 KPLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393 (622)
Q Consensus 315 ~~~~~~i~~~~~~~~-~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~ 393 (622)
+++++++++..+.++ +.||||+||+ ++|+++++||||+|+|++||||++||++||+++||+|+++.+++|++ .++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~ve~Al~~~-~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~-~~l~~ 327 (408)
T 3lnu_A 250 EMLPADLFVGSLKKDTEIVDWAAGWV-PEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRG-VKLAP 327 (408)
T ss_dssp CCEEEEEEEEEEECSSCEEEEEEEEC-SSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTT-CCCCH
T ss_pred CcCCCCCeEeeEecCceeEEEEEEEc-CCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCC-CCCCH
Confidence 877755555556666 8999999999 67999999999999999999999999999999999999998888875 89999
Q ss_pred HhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 473 (622)
Q Consensus 394 ~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~~ 473 (622)
+||||||++||||+|+||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+ |||||++
T Consensus 328 ~DiregL~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~aa~aR~--rkare~~ 405 (408)
T 3lnu_A 328 EDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASARL--KTEKQIV 405 (408)
T ss_dssp HHHHTTEEEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhhCeEEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred hhc
Q 007003 474 RQK 476 (622)
Q Consensus 474 r~k 476 (622)
|||
T Consensus 406 rrK 408 (408)
T 3lnu_A 406 RKK 408 (408)
T ss_dssp ---
T ss_pred ccC
Confidence 876
No 3
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=2.4e-105 Score=862.08 Aligned_cols=387 Identities=44% Similarity=0.794 Sum_probs=365.4
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCC-hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCC
Q 007003 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-GLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (622)
Q Consensus 75 ~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~-gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~ 153 (622)
.+|++++||+|+++|||||||||||||++.. ||+|+|+||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.
T Consensus 2 ~~y~~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 81 (391)
T 1ei1_A 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 81 (391)
T ss_dssp CCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCCEEEEEECCCCcccCc
Confidence 4799999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecC
Q 007003 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLP 233 (622)
Q Consensus 154 h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~ 233 (622)
||++|+|++|++|+++||||||+++ .|++||||||+|+++|||||++|+|+|+++|+.|+|+|++|+++.++...
T Consensus 82 ~~~~~~~~~elv~~~lhagsKf~~~--~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~--- 156 (391)
T 1ei1_A 82 HPEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT--- 156 (391)
T ss_dssp CTTTSSBHHHHHHHSTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE---
T ss_pred ccccCcchHHHhheeccccCCcCCC--cccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceec---
Confidence 9999999999999999999999986 99999999999999999999999999999999999999999988765432
Q ss_pred CCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccC
Q 007003 234 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 313 (622)
Q Consensus 234 ~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~ 313 (622)
+...++||+|+|+||+++|.+...++++.|.+||+++|++||||+|+|+|++.+ .++.|+|++||++|+.+++++
T Consensus 157 -~~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~ 231 (391)
T 1ei1_A 157 -GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG----KEDHFHYEGGIKAFVEYLNKN 231 (391)
T ss_dssp -EECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEECCCSHHHHHHHHHHHT
T ss_pred -cCcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc----ceEEEEcCchHHHHHHHHcCC
Confidence 223579999999999999954157999999999999999999999999999843 357899999999999999998
Q ss_pred CCCCC-ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 007003 314 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 392 (622)
Q Consensus 314 ~~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~ 392 (622)
+++++ +++++..+.+++.||+|++|+ ++|.+.++||||+|+|.+||||++||++||+++||+|+++.++.|+++.+++
T Consensus 232 ~~~~~~~~i~~~~~~~~i~veva~~~~-~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~ 310 (391)
T 1ei1_A 232 KTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 310 (391)
T ss_dssp SCBSSSCCEEEEEEETTEEEEEEEEEB-SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCC
T ss_pred CcccccccEEEEEecCCEEEEEEEEcc-CCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccC
Confidence 88887 678888888899999999998 8898999999999999999999999999999999999999888777778899
Q ss_pred HHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 393 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (622)
Q Consensus 393 ~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~ 472 (622)
++||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+|||||||+
T Consensus 311 ~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 311 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp HHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccEEEEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
No 4
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=3.4e-102 Score=837.80 Aligned_cols=381 Identities=34% Similarity=0.581 Sum_probs=355.6
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCc
Q 007003 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (622)
Q Consensus 75 ~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h 154 (622)
++|++++||+|+++|||||||||||||++. ||+|+||||||+||+++|+|+.|.|+|+.||+|+|+|||+|||++.|
T Consensus 3 ~~y~~~~i~~L~gle~vr~RPgmYiGs~~~---~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~ 79 (390)
T 1s16_A 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIH 79 (390)
T ss_dssp -CCSGGGCEECCTTHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCCCHHHcEEcchhHHHhhCCceeecCCcH---HHHHHHHHHHHHHHHhcCCCCEEEEEEecCCEEEEEECCCCcCcccc
Confidence 469999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCC
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~ 234 (622)
|++|+|++|++|+++||||||+++ .|++||||||+|+++|||||++|+|+|+++|+.|+|+|++|+++.++.+.
T Consensus 80 ~~~~~~~~e~v~~~lhagsKf~~~--~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~---- 153 (390)
T 1s16_A 80 PEEGVPAVELILCRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVV---- 153 (390)
T ss_dssp TTTCSBHHHHHHHCTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----
T ss_pred cccCcchhhheeeeecccCCcCCC--cccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceec----
Confidence 999999999999999999999986 99999999999999999999999999999999999999999987765433
Q ss_pred CCC--CCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHcc
Q 007003 235 DSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 312 (622)
Q Consensus 235 ~~~--~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~ 312 (622)
+.. .++||+|+|+||+++|. +..++++.|.+||+++|++|||++|+|+|++.+ .++.|+|++||++||.++++
T Consensus 154 g~~~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~ 228 (390)
T 1s16_A 154 GTCGKRNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCYQDGLNDYLAEAVN 228 (390)
T ss_dssp EECCTTCCEEEEEEEECGGGSS-CCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECCSSCHHHHHHHHHT
T ss_pred ccccCCCCceEEEEEECccccC-cccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc----eeEEEEcCCcHHHHHHHHhC
Confidence 222 37999999999999995 457999999999999999999999999999842 35789999999999999998
Q ss_pred CCCCCC-ceeEEEeeccceEEEEEEEe-cCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 007003 313 DKKPLH-DVVGFRKDVDGITIDLALQW-CSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDIS 390 (622)
Q Consensus 313 ~~~~~~-~~i~~~~~~~~~~veval~~-s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~ 390 (622)
++++++ +++++..+.+++.|++|++| + ++|++.++||||+|+|.+||||++||++||+++||+|+++.++.| ++.+
T Consensus 229 ~~~~~~~~~i~~~~~~~~~~ve~a~~~~~-~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k-~~~~ 306 (390)
T 1s16_A 229 GLPTLPEKPFIGNFAGDTEAVDWALLWLP-EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVK 306 (390)
T ss_dssp TSCCEEEEEEEEEEECSSEEEEEEEEECT-TCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSC-TTCC
T ss_pred CCcccCCCcEEEEEeeCCEEEEEEEEecc-CCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCc-cCCc
Confidence 877777 67888888889999999999 6 788899999999999999999999999999999999999999888 6789
Q ss_pred CCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 391 LSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRAR 470 (622)
Q Consensus 391 l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar 470 (622)
++++||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+||+|||
T Consensus 307 l~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~aR~aa~kar 386 (390)
T 1s16_A 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386 (390)
T ss_dssp CCHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCHHHHhhccEEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H
Q 007003 471 D 471 (622)
Q Consensus 471 ~ 471 (622)
|
T Consensus 387 e 387 (390)
T 1s16_A 387 V 387 (390)
T ss_dssp -
T ss_pred h
Confidence 8
No 5
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=7.3e-96 Score=789.41 Aligned_cols=386 Identities=43% Similarity=0.688 Sum_probs=359.1
Q ss_pred CCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcC
Q 007003 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHP 155 (622)
Q Consensus 76 ~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~ 155 (622)
+|++++||+|+++||||+||+|||||++.+|++++++|+|+||+||+++++++.|.|+++.+|+|+|+|||+|||++.|+
T Consensus 2 ~y~~~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~~ 81 (390)
T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMP 81 (390)
T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEET
T ss_pred CCCHHHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCCEEEEEEcCCCCCHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCCC
Q 007003 156 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVD 235 (622)
Q Consensus 156 ~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~~ 235 (622)
.+|+|++|++|+++|+|+||+++ .|++++|+||+|+++||++|++++|+|+++|+.|.|+|++|++..++.+.. .
T Consensus 82 ~~~~~~~e~if~~~~~~~kf~~~--~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~~---~ 156 (390)
T 1kij_A 82 EEGKPAVEVIYNTLHSGGKFEQG--AYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVG---E 156 (390)
T ss_dssp TTTEEHHHHHHHSSCEESGGGGS--SCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEE---E
T ss_pred hccccchhhheeeeeecccccCc--cccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceeec---c
Confidence 99999999999999999999876 889999999999999999999999999999999999999999876554331 1
Q ss_pred CC-CCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccCC
Q 007003 236 SK-DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 314 (622)
Q Consensus 236 ~~-~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~~ 314 (622)
.. .++||+|+|+||+++|. +..++++.|.+||+++|++|||++|+|+|++.+ .++.|+|++||++||.++++++
T Consensus 157 ~~~~~~GT~V~f~Pd~~~F~-~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~----~~~~f~~~~Gl~~~v~~l~~~~ 231 (390)
T 1kij_A 157 APRGKTGTRVTFKPDPEIFG-NLRFDPSKIRARLREVAYLVAGLKLVFQDRQHG----KEEVFLDKGGVASFAKALAEGE 231 (390)
T ss_dssp CGGGCCEEEEEEEECHHHHT-TCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT----EEEEECCTTHHHHHHHHHTTTS
T ss_pred ccCCCCCcEEEEEEChHHhC-CccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc----ceEEEEcCCcHHHHHHHHhCCC
Confidence 12 57999999999999995 457999999999999999999999999998742 3578999999999999999988
Q ss_pred CCCC-ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCH
Q 007003 315 KPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 393 (622)
Q Consensus 315 ~~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~ 393 (622)
++++ +++++..+.+++.|++|++|+ ++|.+.++||||+|+|.+||||++||++||++++|+|+++.++.|+++.++++
T Consensus 232 ~~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~~ 310 (390)
T 1kij_A 232 DLLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTG 310 (390)
T ss_dssp CBSCSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCCT
T ss_pred CcCCCCcEEEEeecCCeEEEEEEEec-CCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcCH
Confidence 7777 688888888899999999998 78989999999999999999999999999999999999999988887889999
Q ss_pred HhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007003 394 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 472 (622)
Q Consensus 394 ~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aakkar~~ 472 (622)
+||||||++||||+++||+|+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.+++||+||+||||+
T Consensus 311 ~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 311 DDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp TTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcEEEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=4.7e-94 Score=777.85 Aligned_cols=361 Identities=22% Similarity=0.328 Sum_probs=302.8
Q ss_pred CCCCcccceeccchhhHhhCCCeeeccCCC-----------------------ChhhHHHHHHHHhhHHhhh-cCCCCeE
Q 007003 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-----------------------RGLHHLVYEILDNAVDEAQ-AGYASNI 130 (622)
Q Consensus 75 ~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~-----------------------~gL~~lv~EildNaiDe~~-~g~~~~I 130 (622)
...-+++||+|+++|||||||||||||++. +||||+|+||||||+||++ +|+|+.|
T Consensus 10 ~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I 89 (418)
T 1pvg_A 10 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 89 (418)
T ss_dssp --CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred ccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEE
Confidence 345677999999999999999999999998 8999999999999999995 6999999
Q ss_pred EEEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEE-
Q 007003 131 EVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW- 208 (622)
Q Consensus 131 ~V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~- 208 (622)
+|+|++| |+|+|+|||||||++.||++|+|++|+|||+|||||||+++ .|++||||||||+|||||||++|+|+|+
T Consensus 90 ~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~--~ykvSGGLhGVG~SvVNALS~~l~V~v~r 167 (418)
T 1pvg_A 90 DVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETAD 167 (418)
T ss_dssp EEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT--SCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC--ceeccCCccceeeeeeeeccceEEEEEEE
Confidence 9999988 59999999999999999999999999999999999999987 9999999999999999999999999999
Q ss_pred -eCCEEEEEEEeCCc--ccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHH---HHHHHHHHhhhCCCcEEEE
Q 007003 209 -RDGMEYHQKYSRGK--PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIAL 282 (622)
Q Consensus 209 -r~g~~y~q~f~~G~--~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~---i~~rl~elA~lnpgl~I~l 282 (622)
|+|+.|+|+|++|+ +..+ ... .....++||+|+||||+++|.+ ..|+++. |.+||+++|+|||||+|+|
T Consensus 168 ~rdGk~y~q~f~~G~~~~~~p-~i~---~~~~~~tGT~V~F~PD~~iF~~-~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l 242 (418)
T 1pvg_A 168 LNVGQKYVQKWENNMSICHPP-KIT---SYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYL 242 (418)
T ss_dssp TTTTEEEEEEEETTTTEECCC-EEE---ECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CCCCcEEEEEEEcCCCccCCC-eec---ccCCCCCceEEEEEEChHHcCC-cccCHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 58999999999985 5444 111 0112579999999999999975 4799998 6899999999999999999
Q ss_pred eeCCCCCCCCceeEEEeCCcHHHHHHH----HccCCC---------CCC-ceeEEEeeccceEEEEEEEecCCCCCceee
Q 007003 283 RKEDSDPEKNQYNEYFFAGGLEEYVQW----LNTDKK---------PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTML 348 (622)
Q Consensus 283 ~d~~~~~~~~~~~~f~~~~Gl~dyv~~----l~~~~~---------~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~ 348 (622)
+|++.+ .+|+++|+++ ++.+++ +++ +++++.++.+ .||||+||+ +++ ++++
T Consensus 243 ~der~~-----------~~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~~--~vevA~~~~-~~~-~~~~ 307 (418)
T 1pvg_A 243 NGKSLK-----------IRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN--RWEVAFAVS-DIS-FQQI 307 (418)
T ss_dssp TTEECC-----------CCSHHHHHHTTTTTC-----------------CCSCEEEEEET--TEEEEEEEC-SSS-CEEE
T ss_pred eccccc-----------cccHHHHHHHHHHhhhcccccccccccccCCCCCCEEEEEecc--eEEEEEEEc-CCC-ceEE
Confidence 998742 1478888875 455555 566 5777776644 589999998 565 6799
Q ss_pred eeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCccccc
Q 007003 349 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 428 (622)
Q Consensus 349 SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~ 428 (622)
||||+|+|++||||++||+++|++++++|+++++ +.+++++||||||++||||+++||+|+||||+||+|++.+.
T Consensus 308 SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k~~-----~~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~~ 382 (418)
T 1pvg_A 308 SFVNSIATTMGGTHVNYITDQIVKKISEILKKKK-----KKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDF 382 (418)
T ss_dssp EEETTEECTTCBHHHHHHHHHHHHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGGS
T ss_pred EEeCceeCCCCCcHHHHHHHHHHHHHHHHHHhcc-----cCCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCccccc
Confidence 9999999999999999999999999999987532 35799999999999999999999999999999999987754
Q ss_pred chhhhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Q 007003 429 VVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAK 467 (622)
Q Consensus 429 ~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ka~~aak 467 (622)
+.++++.++|..||++ +.|+++++.+++||+||+
T Consensus 383 v~~~~v~e~l~~~l~~-----~~iv~ki~~~a~ar~aa~ 416 (418)
T 1pvg_A 383 GSRCEIPLEYINKIMK-----TDLATRMFEIADANEENA 416 (418)
T ss_dssp SSCCCCCHHHHHHHTT-----SHHHHHHHHHHHC-----
T ss_pred ccccchhHHHHHHHhh-----hHHHHHHHHHHHHHHHhh
Confidence 4457999999999985 566666666777766553
No 7
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=3.3e-94 Score=775.77 Aligned_cols=361 Identities=21% Similarity=0.283 Sum_probs=306.5
Q ss_pred cccceeccchhhHhhCCCeeeccCC----------------------CChhhHHHHHHHHhhHHhhh-cCCCCeEEEEEe
Q 007003 79 SEQIQVLEGLEAVRKRPAMYIGSTG----------------------PRGLHHLVYEILDNAVDEAQ-AGYASNIEVALL 135 (622)
Q Consensus 79 ~~~i~~L~~~E~Vr~RP~mYiGs~~----------------------~~gL~~lv~EildNaiDe~~-~g~~~~I~V~i~ 135 (622)
++.||+|+++|||||||||||||++ .+||||+|+||||||+||++ +|+|+.|.|+|+
T Consensus 3 ~~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~ 82 (400)
T 1zxm_A 3 ERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTID 82 (400)
T ss_dssp HHHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred hHhheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE
Confidence 4689999999999999999999999 68999999999999999995 799999999999
Q ss_pred CC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEe--CCE
Q 007003 136 AD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWR--DGM 212 (622)
Q Consensus 136 ~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r--~g~ 212 (622)
.| |+|+|+|||||||++.||++|+|++|++|+++||||||+++ .|++||||||+|+++|||||++|+|++++ +|+
T Consensus 83 ~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~--~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~ 160 (400)
T 1zxm_A 83 PENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 160 (400)
T ss_dssp TTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG--GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTE
T ss_pred CCCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC--cccccCCccccceeeeEEeccceEEEEecCCCCc
Confidence 86 89999999999999999999999999999999999999986 99999999999999999999999999997 589
Q ss_pred EEEEEEeCCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCHHH---HHHHHHHHhhhCCCcEEEEeeCCCCC
Q 007003 213 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDP 289 (622)
Q Consensus 213 ~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~---i~~rl~elA~lnpgl~I~l~d~~~~~ 289 (622)
.|+|+|++|++..+...+. ....++||+|+|+||+++|. ...|+++. |.+|++++|++||||+|+|+|++.+
T Consensus 161 ~~~~~~~~G~~~~~~~~ig---~~~~~~GT~V~F~Pd~~iF~-~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der~~- 235 (400)
T 1zxm_A 161 MFKQTWMDNMGRAGEMELK---PFNGEDYTCITFQPDLSKFK-MQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP- 235 (400)
T ss_dssp EEEEEEETTTTEECCCEEE---ECCSCCEEEEEEEECGGGGT-CSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC-
T ss_pred EEEEEEccCccccCcceec---cCCCCCccEEEEEEChHHhC-ceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC-
Confidence 9999999998876653321 12356899999999999996 45799988 8899999999999999999998732
Q ss_pred CCCceeEEEeCCcHHHHHHHHccCCCCCCc-eeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHH
Q 007003 290 EKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 368 (622)
Q Consensus 290 ~~~~~~~f~~~~Gl~dyv~~l~~~~~~~~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~ 368 (622)
.+||++||++++.+++++++ ++.+..+.+++.||||+||++++| +++||||+|+|++||||++||++
T Consensus 236 ----------~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~--~~~sfvN~I~T~~GGTH~~gfr~ 303 (400)
T 1zxm_A 236 ----------VKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGF--QQISFVNSIATSKGGRHVDYVAD 303 (400)
T ss_dssp ----------CCSHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSC--EEEEEETTEECTTEEHHHHHHHH
T ss_pred ----------CCCHHHHHHHHhcCCCccCCCCcceEEeecCcEEEEEEEEcCCCc--eEEEEeCCccCCCCCcHHHHHHH
Confidence 37999999999988877763 333333456678999999985477 37999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhh-hhhHHHHHHHhhCHH
Q 007003 369 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ-SVQEYLTEYLELHPD 447 (622)
Q Consensus 369 al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~-~v~~~l~~~l~~np~ 447 (622)
||+++||+|+++++ +++.+++++||||||++||||+++||+|+||||+||+|+++ .++++ .+.+.|..|| .||+
T Consensus 304 altr~i~~y~~k~~---k~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~~~~~l-~~~~ 378 (400)
T 1zxm_A 304 QIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEKFIKAA-IGCG 378 (400)
T ss_dssp HHHHHHHHHHTTCC-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHHHHHHH-TTC-
T ss_pred HHHHHHHHHHHHhc---ccCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHHHHHHH-cChH
Confidence 99999999998762 34568999999999999999999999999999999999988 78888 9999999999 8999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007003 448 VLDSILSKSLSALKAA 463 (622)
Q Consensus 448 ~~~~I~~k~~~~~ka~ 463 (622)
+++.|+++++.+++++
T Consensus 379 ~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 379 IVESILNWVKFKAQVQ 394 (400)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987765543
No 8
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=8.6e-88 Score=720.45 Aligned_cols=344 Identities=30% Similarity=0.530 Sum_probs=312.0
Q ss_pred eccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcCCCCcchHH
Q 007003 84 VLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALE 163 (622)
Q Consensus 84 ~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~~~g~~~~e 163 (622)
.++++|||||||||||||++.+||+|+||||||||+||+++|+|++|+|+|++||+|+|+|||||||+ |
T Consensus 8 ~~~~lE~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~DnGrGIp~-----------e 76 (369)
T 3cwv_A 8 PGGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTA-----------E 76 (369)
T ss_dssp -CCHHHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEEESSCCH-----------H
T ss_pred CccHhHHHHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEECCCCcCH-----------h
Confidence 45679999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred HhhhhccCCCCCCCCC--CceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcc------cccceeeecCCC
Q 007003 164 TVLTVLHAGGKFGGSS--SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP------VTTLTCHVLPVD 235 (622)
Q Consensus 164 ~v~t~lhag~kf~~~~--~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~------~~~~~~~~~~~~ 235 (622)
++| ++||||||++.+ +.|+++| |+++|||||++|+|+|+++|+.|+|+|++|++ +.++.+. +
T Consensus 77 ~v~-~lhagsKf~~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G~~~~~~~~~~~l~~~----g 146 (369)
T 3cwv_A 77 NLV-RVATGAGFLGRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPM----P 146 (369)
T ss_dssp HHH-HHHTTTTGGGSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCC----S
T ss_pred Hee-eeecCCCcCCCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCCcccccccccCCceEe----c
Confidence 889 999999999833 4898884 79999999999999999999999999999998 5544322 3
Q ss_pred CCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcHHHHHHHHccCCC
Q 007003 236 SKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 315 (622)
Q Consensus 236 ~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl~dyv~~l~~~~~ 315 (622)
...++||+|+|+||+++|. +..++++.|.+|++++|++|||++|+|++++.+ .++.|+|++||++|+.+++++++
T Consensus 147 ~~~~~GT~V~f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~ 221 (369)
T 3cwv_A 147 VSAERGVRVHFVPDATIFE-VLAFDRARLSRRCNELAALAPGLRVSFADLQRG----ERTLWHLPGGVAQWAHVLTEARP 221 (369)
T ss_dssp SCCSEEEEEEEEECTTTCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEEECTTHHHHHHHHHHTTSC
T ss_pred ccCCCCCEEEEEECHHHhC-CccccHHHHHHHHHHHcCcCCCcEEEEEeCCCC----eeEEEEeCchHHHHHHHHhcCCc
Confidence 3458999999999999995 467999999999999999999999999999843 36789999999999999999887
Q ss_pred CCC-ceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHH
Q 007003 316 PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGE 394 (622)
Q Consensus 316 ~~~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~ 394 (622)
+++ ++++++.+.+++.|++|++|+ ++|++.++||||+|+|.+||||++||++||++++++|+| +++.+++++
T Consensus 222 ~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k------~~~~~l~~~ 294 (369)
T 3cwv_A 222 QLHPEPVVFDFTWDGLRVQCALQWC-EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWA 294 (369)
T ss_dssp BSSSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHH
T ss_pred ccCCCcEEEEEecCCEEEEEEEEec-CCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHh------hcCCCcCHH
Confidence 777 678889888899999999998 789999999999999999999999999999999999992 234579999
Q ss_pred hHhcccEEEEEEeecCCC--CCCcccccccCcccccchhhhhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 007003 395 HVREGLTCIISVRVPNPE--FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 460 (622)
Q Consensus 395 diregL~~vvsv~i~nP~--FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~~~~I~~k~~~~~ 460 (622)
||||||++||||+++||+ |+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.++
T Consensus 295 dvregl~avisvk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 295 RVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369)
T ss_dssp HHTTTEEEEEEEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred HHhhccEEEEEeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 999999999999999999 999999999999999999999999999999999999999999998664
No 9
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=1.6e-65 Score=511.67 Aligned_cols=216 Identities=50% Similarity=0.871 Sum_probs=183.1
Q ss_pred CCCcccceeccchhhHhhCCCeeeccCCC-ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCc
Q 007003 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLH 154 (622)
Q Consensus 76 ~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~-~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h 154 (622)
+|++++||+|+++|||||||||||||++. +||+|+|+||||||+||+++|+|+.|+|+|+.||+|+|+|||||||++.|
T Consensus 4 ~y~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIH 83 (220)
T ss_dssp -----------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTSCEEEEECSSCCCCSEE
T ss_pred ccChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcEEEEECCcCcccccc
Confidence 79999999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCC
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 234 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~ 234 (622)
|++|+|++|++|+++||||||+++ .|++||||||+|+|+|||||++|+|+++|+|+.|+|+|++|+++.++...
T Consensus 84 ~~~~~~~~e~i~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~~---- 157 (220)
T 4duh_A 84 PEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT---- 157 (220)
T ss_dssp TTTTEEHHHHHHHSTTCSSCCCTT--C--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSSCEEE----
T ss_pred cccCcchhhheeeecccCCCcCCC--ccccccCccceecchhcccccceEEEEEECCEEEEEEecCCcCcCCceec----
Confidence 999999999999999999999987 89999999999999999999999999999999999999999998876543
Q ss_pred CCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCC
Q 007003 235 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (622)
Q Consensus 235 ~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~ 301 (622)
+.+.++||+|+|+||+++|.++..|+++.|.+||+++|++||||+|+|+|++.+ +.++|+|+|
T Consensus 158 g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~~~y~g 220 (220)
T 4duh_A 158 GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG----KEDHFHYEG 220 (220)
T ss_dssp EECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTC----CEEEEC---
T ss_pred cccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCC----cEEEEEcCC
Confidence 345689999999999999986547999999999999999999999999999853 467899975
No 10
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=5.2e-66 Score=513.91 Aligned_cols=148 Identities=55% Similarity=0.916 Sum_probs=128.5
Q ss_pred HHhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHH
Q 007003 472 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 551 (622)
Q Consensus 472 ~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~l 551 (622)
..|||++++.+.|||||+||+++||++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 35667888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 552 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 552 i~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
++|||||+ +++||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||+.
T Consensus 101 i~alG~g~-g~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~ 168 (268)
T 3k9f_C 101 IYTIGAGV-GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK 168 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC
T ss_pred HHHhCCCC-CccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEe
Confidence 99999998 577999999999999999999999999999999999999999999999999999999974
No 11
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=1.2e-63 Score=499.45 Aligned_cols=218 Identities=51% Similarity=0.845 Sum_probs=181.1
Q ss_pred CCCCCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCC
Q 007003 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDL 153 (622)
Q Consensus 74 ~~~Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~ 153 (622)
.++|++++||+|+++|||||||+|||||++.+||+|+|+|||+||+||+++|+|+.|+|+|+.||+|+|+|||||||++.
T Consensus 8 ~~~y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~ 87 (226)
T 4emv_A 8 INNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGM 87 (226)
T ss_dssp ---------CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred hhcCChhhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCC-cccccceeeec
Q 007003 154 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVL 232 (622)
Q Consensus 154 h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G-~~~~~~~~~~~ 232 (622)
| ++|+|++|++|+++||||||+++ .|++|||+||||+|+|||||++|+|+++|+|+.|+|+|++| +++.+++.+..
T Consensus 88 h-~~~~~~~e~v~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg~~~~~l~~ig~ 164 (226)
T 4emv_A 88 H-AMGIPTVEVIFTILHAGGKFGQG--GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIGT 164 (226)
T ss_dssp C-GGGCBHHHHHHHCBC----------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTTEESSCSEEEEE
T ss_pred c-ccCceehheeEEeecccCccCcc--ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCCEEcCCceEecc
Confidence 9 89999999999999999999987 99999999999999999999999999999999999999999 88877654310
Q ss_pred CCCCCCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCC
Q 007003 233 PVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 301 (622)
Q Consensus 233 ~~~~~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~ 301 (622)
....++||+|+|+||+++|.+ ..|+++.|.+||+++|++||||+|+|+|++.+ +.++|+|+|
T Consensus 165 --~~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~f~y~g 226 (226)
T 4emv_A 165 --ALKSKTGTKVTFMPDATIFST-TDFKYNTISERLNESAFLLKNVTLSLTDKRTD----EAIEFHYEN 226 (226)
T ss_dssp --CCTTCCEEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHHCSCEEEEEETTTC----CEEEECCCC
T ss_pred --cCCCCCCeEEEEEECHHHcCC-CCcCHHHHHHHHHHHhhcCCCCEEEEEecCCC----cEEEEEcCC
Confidence 112679999999999999965 57999999999999999999999999999964 357899975
No 12
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=4e-64 Score=528.19 Aligned_cols=153 Identities=56% Similarity=0.950 Sum_probs=111.0
Q ss_pred HHHHHHhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHh
Q 007003 468 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 547 (622)
Q Consensus 468 kar~~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~E 547 (622)
+||+++|||+.+..+.|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+|
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~E 82 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 82 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCHH
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCHH
Confidence 57889999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 548 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 548 i~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
|++||+|||||++.++||+++||||||||||||||||+|||+|||||||||||+||++||||+|+||||||+.
T Consensus 83 i~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~ 155 (420)
T 3nuh_B 83 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKK 155 (420)
T ss_dssp HHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEE
T ss_pred HHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEc
Confidence 9999999999996678999999999999999999999999999999999999999999999999999999974
No 13
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=4.6e-60 Score=466.61 Aligned_cols=132 Identities=53% Similarity=0.946 Sum_probs=106.5
Q ss_pred cCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcC
Q 007003 488 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 567 (622)
Q Consensus 488 L~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~ 567 (622)
..|-.++||++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||++||+|||||+ +++||++
T Consensus 9 ~~~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~-g~~~d~~ 87 (242)
T 3m4i_A 9 VDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIG 87 (242)
T ss_dssp ------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCS-GGGCCGG
T ss_pred CCCccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCc-Ccccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999999999999 5779999
Q ss_pred CCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 568 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 568 ~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
+||||||||||||||||+||++|||||||||||+||++||||+|+||||||+.
T Consensus 88 ~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~ 140 (242)
T 3m4i_A 88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKW 140 (242)
T ss_dssp GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECC
T ss_pred ccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999963
No 14
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=2.4e-59 Score=529.61 Aligned_cols=162 Identities=46% Similarity=0.740 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecc
Q 007003 454 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILN 533 (622)
Q Consensus 454 ~k~~~~~ka~~aakkar~~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLN 533 (622)
++++.+++||++++++ .+||+.++...|||||+||+++||++|||||||||||||||||||||+|||||||||||||
T Consensus 2 ~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiLN 78 (767)
T 2xkj_E 2 EMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKILN 78 (767)
T ss_dssp --------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCCC
T ss_pred hHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchhh
Confidence 5777888888755443 3467888888999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHhhCHhHHHHHHHhCCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcC
Q 007003 534 VERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 613 (622)
Q Consensus 534 v~k~~~~ki~~N~Ei~~li~alG~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~ 613 (622)
||+++.+||++|+||++|++|||||++ + .|+++||||||||||||||||+||+||||||||||||+||++||||+|+|
T Consensus 79 v~ka~~~ki~~n~Ei~~i~~alG~~~g-~-~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~p 156 (767)
T 2xkj_E 79 TWEVSSDEVLASQEVHDIAIAIGVDPG-S-DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAMP 156 (767)
T ss_dssp CTTSCTTTGGGSHHHHHHHHHHTCCTT-C-CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEECC
T ss_pred hhcCCHHHHhccHHHHHHHHHhCCCcc-c-ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEecC
Confidence 999999999999999999999999995 3 39999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEe
Q 007003 614 PLYKVCF 620 (622)
Q Consensus 614 Pl~kv~~ 620 (622)
|||||+.
T Consensus 157 Pl~kv~~ 163 (767)
T 2xkj_E 157 PLFRIDI 163 (767)
T ss_dssp CSEEEEE
T ss_pred CEEEEEE
Confidence 9999974
No 15
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=1.2e-55 Score=434.35 Aligned_cols=197 Identities=53% Similarity=0.845 Sum_probs=179.7
Q ss_pred CCcccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcCC
Q 007003 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPA 156 (622)
Q Consensus 77 Y~~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~~ 156 (622)
|++++||+|+++|||||||||||||++.+||+|+|+||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++.|++
T Consensus 2 y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~DnG~Gip~~~h~~ 81 (198)
T 3ttz_A 2 YGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 81 (198)
T ss_dssp CCHHHHHHHHHHHHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEECSSCCCCSBCTT
T ss_pred CChhHeEEecchHHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEECCCCccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCCCC
Q 007003 157 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS 236 (622)
Q Consensus 157 ~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~~~ 236 (622)
+|++.+|++|+ +|+|||||++|+|+++|+|+.|+|+|++|+++.++..+ +.
T Consensus 82 ~~~~~~e~i~t-------------------------~SvVNALS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~i----~~ 132 (198)
T 3ttz_A 82 MGRPAVEVILT-------------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV----GT 132 (198)
T ss_dssp TSSBHHHHHHH-------------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EE
T ss_pred CCCccccccce-------------------------eEehhhhcCeEEEEEEECCcEEEEEEeCCEECCCceec----cC
Confidence 99999999987 99999999999999999999999999999998877543 33
Q ss_pred CCCCCcEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCCcH
Q 007003 237 KDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 303 (622)
Q Consensus 237 ~~~~GT~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~Gl 303 (622)
..++||+|+|+||+++|..+..++++.|.+||+++|++||||+|+|+|++.+.+ .+.++|+|+|||
T Consensus 133 ~~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~-~~~~~f~~~gGi 198 (198)
T 3ttz_A 133 TDKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDERDEEN-VREDSYHYEGGI 198 (198)
T ss_dssp CSCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTS-CEEEEECCC---
T ss_pred CCCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCC-cceEEEEcCCCC
Confidence 467999999999999994456799999999999999999999999999985421 135799999996
No 16
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=2.5e-54 Score=426.28 Aligned_cols=201 Identities=43% Similarity=0.756 Sum_probs=164.0
Q ss_pred chhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcCCCCcchHHHhh
Q 007003 87 GLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVL 166 (622)
Q Consensus 87 ~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~ 166 (622)
|+|||||||||||||+++ +|+|+|||+||+||+++|+|+.|+|+|+.+|+|+|+|||+|||++.||++|++++|++|
T Consensus 1 gle~vr~rpgmyig~~~~---~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~ 77 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIL 77 (201)
T ss_dssp CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHHH
T ss_pred CchhhccCCccEECCCCh---hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCcCcccccccCcchhheee
Confidence 689999999999999876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeCCcccccceeeecCCCCCCCCCcEEEE
Q 007003 167 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246 (622)
Q Consensus 167 t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F 246 (622)
+.+||||||+++ .|++|+||||+|++++||||++|+|+++++|+.|+|+|++|+++.++..+.. ....++||+|+|
T Consensus 78 ~~~hatsK~~~~--~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G~~~~~~~~~g~--~~~~~~GT~V~f 153 (201)
T 3fv5_A 78 CRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT--CGKRNTGTSVHF 153 (201)
T ss_dssp HCC-----------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEE--CCTTCCEEEEEE
T ss_pred eeeccccCcCCC--cccccCcccceecchhhcccceEEEEEEecCceEEEEEeCCEEcccceeccc--CCCCCCCeEEEE
Confidence 999999999986 8999999999999999999999999999999999999999998866543310 112679999999
Q ss_pred EeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEe
Q 007003 247 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 299 (622)
Q Consensus 247 ~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~ 299 (622)
+||+++|. +..++++.|.+||+++|++||+|+|+|++++.+ +.+.|||
T Consensus 154 ~Pdr~~F~-~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~----~~~~~~y 201 (201)
T 3fv5_A 154 WPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCY 201 (201)
T ss_dssp EECGGGSS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECC
T ss_pred EECHHHcC-CCccCHHHHHHHHHHHHHhCCCCEEEEEecCCC----cEEEEEC
Confidence 99999995 567999999999999999999999999999854 3567876
No 17
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=6e-54 Score=480.40 Aligned_cols=134 Identities=64% Similarity=1.074 Sum_probs=126.1
Q ss_pred cCCCCCCcCCCCCCCCCcceEEEEecCCCCCcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHHHhCCCCC
Q 007003 481 SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK 560 (622)
Q Consensus 481 ~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~alG~~~~ 560 (622)
...|||||+||+++|+++|||||||||||||||||||||+|||||||||||||||+++.+|+++|+||++|++|||||+
T Consensus 3 ~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~- 81 (692)
T 2xcs_B 3 VASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI- 81 (692)
T ss_dssp ------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC-
T ss_pred CCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCc-
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcE
Q 007003 561 GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPL 615 (622)
Q Consensus 561 ~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl 615 (622)
+++||+++||||||||||||||||+||+||||||||||||+||++||||+++||+
T Consensus 82 g~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~ 136 (692)
T 2xcs_B 82 GGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT 136 (692)
T ss_dssp GGGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS
T ss_pred CccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch
Confidence 5669999999999999999999999999999999999999999999999999997
No 18
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=3e-53 Score=475.10 Aligned_cols=137 Identities=34% Similarity=0.559 Sum_probs=131.0
Q ss_pred CCCCCCcCCCC---CCCCCcceEEEEecCCCCCcccccCC---CCceeecccCCeecccccccHHHHhhCHhHHHHHHHh
Q 007003 482 SSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 555 (622)
Q Consensus 482 ~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gsak~gRd---r~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~al 555 (622)
.++| ||+||+ ++||++|||||||||||||||+|||+ |+|||||||||||||||+++.+||++|+||++|++||
T Consensus 4 ~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~al 82 (757)
T 3l4j_A 4 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIM 82 (757)
T ss_dssp CSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHT
T ss_pred CCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHHh
Confidence 3577 999995 79999999999999999999999884 8899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhh-cCcEEEEcCcEEEEE
Q 007003 556 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVC 619 (622)
Q Consensus 556 G~~~~~~~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~-~G~v~~~~~Pl~kv~ 619 (622)
||+++.++||+++||||||||||||||||+|||||||||||||||+||+ +||||+|+||||||+
T Consensus 83 G~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~ 147 (757)
T 3l4j_A 83 GLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVS 147 (757)
T ss_dssp TCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEE
T ss_pred CCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEe
Confidence 9999666679999999999999999999999999999999999999999 899999999999998
No 19
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=9.3e-53 Score=471.58 Aligned_cols=136 Identities=38% Similarity=0.620 Sum_probs=123.0
Q ss_pred CCCCCCcCCC---CCCCCCcceEEEEecCCCC-----CcccccCCCCceeecccCCeecccccccHHHHhhCHhHHHHHH
Q 007003 482 SSLPGKLADC---SSTTPEESEIFIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 553 (622)
Q Consensus 482 ~~lpgKL~Dc---~~~~~~~~eL~lvEGDSA~-----Gsak~gRdr~~qailPLrGKiLNv~k~~~~ki~~N~Ei~~li~ 553 (622)
.++| ||+|| +++||++|||||||||||| ||||||||| ||||||||||||||+++.+||++|+||++|++
T Consensus 34 ~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~ 110 (803)
T 3qx3_A 34 KGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 110 (803)
T ss_dssp CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred CCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHHH
Confidence 4678 99999 6899999999999999999 999999998 89999999999999999999999999999999
Q ss_pred HhCCCCCCC---CCCcCCCCCCceEEeeCCCCCCCchHHHHHHHHHhhcHhhhhcCcEEEEcCcEEEEEe
Q 007003 554 ALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVCF 620 (622)
Q Consensus 554 alG~~~~~~---~~~~~~LRY~kIiImTDaDvDGsHI~~Llltff~~~~p~Li~~G~v~~~~~Pl~kv~~ 620 (622)
|||||++.+ .+|+++||||||||||||||||+||+||||||||||||+||+.||||+|+||||||+.
T Consensus 111 alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~ 180 (803)
T 3qx3_A 111 IVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASK 180 (803)
T ss_dssp HHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC-------
T ss_pred HhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEec
Confidence 999999543 2589999999999999999999999999999999999999999999999999999963
No 20
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=3.6e-40 Score=371.89 Aligned_cols=304 Identities=19% Similarity=0.197 Sum_probs=238.5
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhh-cCCCCeEEEEEeCCC----eEEEEECCCCccCCCc
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLADN----SVSVADNGRGIPIDLH 154 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~-~g~~~~I~V~i~~dg----~IsV~DnGrGIP~~~h 154 (622)
++.+.++..++++++|+||....+..+|+++++|||+||+|+.. +|++..|.|+++.++ .|+|+|||+|||.+.+
T Consensus 11 e~~k~isi~~~~~~~~~~~~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l 90 (621)
T 2q2e_B 11 KKQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQI 90 (621)
T ss_dssp CCCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGH
T ss_pred HHhhcCceEEEecCCCceeEEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHH
Confidence 35667788899999999998788889999999999999999988 577889999998755 6999999999999874
Q ss_pred CCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCce-----EEEEEeCC--EEEEEEE----eCCcc
Q 007003 155 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWRDG--MEYHQKY----SRGKP 223 (622)
Q Consensus 155 ~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~-----~V~t~r~g--~~y~q~f----~~G~~ 223 (622)
+.+|+.+|++++|.. ++.++|.||+|+++++++|+.+ +|++++++ ..|.++| ++|.+
T Consensus 91 --------~~iF~~~~atskf~~----~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~ 158 (621)
T 2q2e_B 91 --------PKVFAKLLYGSRFHA----LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEP 158 (621)
T ss_dssp --------HHHHSCCCCC--CCC----CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSC
T ss_pred --------HHHhhhhccCCcccc----ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccc
Confidence 468999999999974 4578899999999999999985 99998876 7899999 77776
Q ss_pred cccceeeecCCCCCCCCCcEEEEEeCccccccccccCH---HHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeC
Q 007003 224 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH---NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA 300 (622)
Q Consensus 224 ~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~---~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~ 300 (622)
....... .+...++||+|+|+ |.. .++. +.|.++++++|++||+++|+|++++ .+.|+|+
T Consensus 159 ~~~~~~~---~~~~~~~GT~V~~~-----f~~--~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~-------~~~~~~~ 221 (621)
T 2q2e_B 159 DILVDEV---RDWFRPHGTQIELE-----MRA--AYVKGRRQSIYEYLKATAIVNPHARITLIDPD-------GNEEVFE 221 (621)
T ss_dssp CCCCEEE---CCCSCSSCCCEEEE-----CSC--CCCCCSSSSSHHHHHHHHHHCCSCEEEECCTT-------SCCEEEE
T ss_pred ccccccc---ccCCCCCCCEEEEE-----ecC--ccchHHHHHHHHHHHHHHhhCCCCEEEEEECC-------ceEEEeC
Confidence 5422111 13456799999999 432 2343 7899999999999999999999986 2579999
Q ss_pred CcHHHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecCCCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhh
Q 007003 301 GGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK 380 (622)
Q Consensus 301 ~Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk 380 (622)
+|+ .+++....++++.+ .+...+ .++++++|+ ++| ++.||||+++|.+|| +++|+|+++
T Consensus 222 gg~----~~L~~~~~~i~p~~--~G~~~~-~~eval~~~-~~~--~i~sFvN~i~T~~GG-----------r~in~~~~~ 280 (621)
T 2q2e_B 222 RAT----DKMPEPAEEILPHP--EGIELG-TLMKMLHYT-ERQ--KLAPFLRYSFCKIGL-----------LTAEEICKA 280 (621)
T ss_dssp CCC----CCCCCCCCCCCCCS--TTCCHH-HHHHHHHHC-C-------CTTSSSSCC--C-----------HHHHHHHHT
T ss_pred Ccc----cchhcccccccCCc--eeeccC-eEEEEEeeC-CCe--EEEEEeCCcccCCCH-----------HHHHHHHHH
Confidence 986 34455555555322 122222 466788887 677 589999999999999 678899998
Q ss_pred ccCCCC-CCCCCCHHhHhcccEEEEEEeecCCCCCCcccccccCcccccchhhhhhHHHHHHHh
Q 007003 381 SKTVKD-KDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 443 (622)
Q Consensus 381 ~~~~k~-~~~~l~~~diregL~~vvsv~i~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~ 443 (622)
.++.|+ ++.+++++|||+||++|+||+++||+|+ +++.+++..+.+.|.+||.
T Consensus 281 ~~l~k~~~~~~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 281 AGLDPEIDPHALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp TTCCTTSCSSSCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred hCccccccCCCCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 888776 5678999999999999999999999755 6788889999999998874
No 21
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.8e-26 Score=242.84 Aligned_cols=284 Identities=13% Similarity=0.157 Sum_probs=196.0
Q ss_pred cccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCC
Q 007003 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPA 156 (622)
Q Consensus 79 ~~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~ 156 (622)
+..|+.|.....-+.++|++| ..+.++++|||+||+|+ .++.|.|+++.+| .|+|.|||+|||.+..+
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi-----~~~~~vv~eLv~NAidA----~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~- 75 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVI-----QRPANAIKEMIENCLDA----KSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLD- 75 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHC-----CSHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEECSCCCCGGGGG-
T ss_pred ccccccCCHHHHHhhcccCcc-----cCHHHHHHHHHHHHHHc----CCCEEEEEEEeCCEEEEEEEECCcCcChHHhh-
Confidence 446999999999999999996 46789999999999999 3899999999766 49999999999998753
Q ss_pred CCcchHHHhhhhccCCCCCCCCCCce-eeecCcccccchhhhhccCceEEEEEeCC--EEEEEEEeCCcccccceeeecC
Q 007003 157 TNKSALETVLTVLHAGGKFGGSSSGY-SVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLP 233 (622)
Q Consensus 157 ~g~~~~e~v~t~lhag~kf~~~~~~y-~~sgG~~GvGls~vNalS~~~~V~t~r~g--~~y~q~f~~G~~~~~~~~~~~~ 233 (622)
.+| ..|+++|+.+.++.+ ..|+|+||+|++++|++| +++|+|+++| ..|+++|++|.+..+..+
T Consensus 76 -------~~~-~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~---- 142 (348)
T 3na3_A 76 -------IVC-ERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKP---- 142 (348)
T ss_dssp -------TTT-STTCCSSCCCC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEE----
T ss_pred -------hhh-ccccccccCcchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeE----
Confidence 344 468999997654455 579999999999999999 8999999987 489999999987654332
Q ss_pred CCCCCCCCcEEEE------EeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeC--CcHHH
Q 007003 234 VDSKDRQGTRIRF------WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEE 305 (622)
Q Consensus 234 ~~~~~~~GT~V~F------~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~--~Gl~d 305 (622)
...++||+|+| +|++.+|..+...+++.|.++++++|++||+++|.|.++... ...|... +.+.+
T Consensus 143 --~~~~~GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~-----~~~~~~~~~~~~~~ 215 (348)
T 3na3_A 143 --CAGNQGTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGET-----VADVRTLPNASTVD 215 (348)
T ss_dssp --ECCCSEEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCS-----SCSEECCTTCCHHH
T ss_pred --ecCCCCcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEE-----EEEeecCCCCCHHH
Confidence 24579999999 599999965556788999999999999999999999987521 1123332 34777
Q ss_pred HHHHHccCCCCCCceeEEEeecc--ceEEEEEEEecC-CCCCceeeeeeCceeccCCccchHHHHHHHHHHHHHHHhhcc
Q 007003 306 YVQWLNTDKKPLHDVVGFRKDVD--GITIDLALQWCS-DAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSK 382 (622)
Q Consensus 306 yv~~l~~~~~~~~~~i~~~~~~~--~~~veval~~s~-~~~~~~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~~~kk~~ 382 (622)
.+..+-+..- ..+.+.+..+.+ ++.++--+.-.. ..-...++-|||+.+-..- .|.++|++..+...
T Consensus 216 ~i~~i~G~~~-~~~l~~v~~~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~---------~l~~ai~~~y~~~l 285 (348)
T 3na3_A 216 NIRSIFGNAV-SRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVEST---------SLRKAIETVYAAYL 285 (348)
T ss_dssp HHHHHHCHHH-HTTEEEEEEEEGGGTEEEEEEEECSSCCBSSCEEEEEETTEECCCT---------THHHHHHHHHHTTS
T ss_pred HHHHHhChHh-HhhcEEEEeecCCccEEEEEEEeCCccCCCcccEEEEECCeEecCH---------HHHHHHHHHHHHhC
Confidence 7776654211 112333443333 355553222111 0112467999999997653 34555544333311
Q ss_pred CCCCCCCCCCHHhHhcccEEEEEEeecCCCCC
Q 007003 383 TVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (622)
Q Consensus 383 ~~k~~~~~l~~~diregL~~vvsv~i~nP~Fe 414 (622)
.+. ..=.+++++.++.-..|
T Consensus 286 -~~~-----------~~P~~~L~l~~~p~~vD 305 (348)
T 3na3_A 286 -PKN-----------THPFLYLSLEISPQNVD 305 (348)
T ss_dssp -CTT-----------CBCEEEEEEECC-----
T ss_pred -cCC-----------CceEEEEEEEeChhhee
Confidence 111 13378888888755555
No 22
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.9e-26 Score=242.85 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=190.8
Q ss_pred cceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCCC
Q 007003 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATN 158 (622)
Q Consensus 81 ~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~g 158 (622)
.|+.|.....-+.++|++| ..+.++|+|||+||+|+ | ++.|.|++..+| .|+|.|||+|||.+.++
T Consensus 5 ~I~~L~~~~~~~I~agevi-----~~~~~vv~eLv~NaiDA---~-a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~--- 72 (367)
T 3h4l_A 5 QIHQINDIDVHRITSGQVI-----TDLTTAVKELVDNSIDA---N-ANQIEIIFKDYGLESIECSDNGDGIDPSNYE--- 72 (367)
T ss_dssp --------CTHHHHHHHHC-----CSHHHHHHHHHHHHHHT---T-CSEEEEEEETTTTSEEEEEECSCCCCGGGTT---
T ss_pred cceeCCHHHHHHhcCCCcc-----cCHHHHHHHHHHHHHHC---C-CCEEEEEEEeCCEEEEEEEECCCCcChhHhc---
Confidence 5888888888888888885 56799999999999998 4 899999998766 89999999999998765
Q ss_pred cchHHHhhhhccCCCCCCCCCCce-eeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEe-CCcccccceeeecCCC
Q 007003 159 KSALETVLTVLHAGGKFGGSSSGY-SVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYS-RGKPVTTLTCHVLPVD 235 (622)
Q Consensus 159 ~~~~e~v~t~lhag~kf~~~~~~y-~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~-~G~~~~~~~~~~~~~~ 235 (622)
.+ ...|+++|+.+.++.+ ..|+|+||+|++++|++| +++|+|++++ ..|+++|. +|.+.... +
T Consensus 73 -----~~-~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-------~ 138 (367)
T 3h4l_A 73 -----FL-ALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-------T 138 (367)
T ss_dssp -----TT-TCCEEC---------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-------E
T ss_pred -----cc-eeccccCcCCchhhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-------c
Confidence 23 3458889986543344 579999999999999999 6999999887 78999997 67775432 1
Q ss_pred CCCCCCcEEEE------EeCccc-cccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeC--CcHHHH
Q 007003 236 SKDRQGTRIRF------WPDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFA--GGLEEY 306 (622)
Q Consensus 236 ~~~~~GT~V~F------~PD~~i-F~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~--~Gl~dy 306 (622)
...++||+|+| +|++.+ |..+...++..|.++++++|++||+++|+|.+..... .....|... +.+.+.
T Consensus 139 ~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~--~~~~~~~t~~~~~~~~~ 216 (367)
T 3h4l_A 139 TSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKG--KKNLILSTMRNSSMRKN 216 (367)
T ss_dssp ECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCSSCCHHHH
T ss_pred ccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCC--cceEEEECCCCCCHHHH
Confidence 25579999999 599998 9766667889999999999999999999998753210 123445443 348888
Q ss_pred HHHHccCCCCCCceeEEEe-----------------------eccceEEEEEEEe-c---CCCCCceeeeeeCceeccCC
Q 007003 307 VQWLNTDKKPLHDVVGFRK-----------------------DVDGITIDLALQW-C---SDAYSDTMLGYANSIRTIDG 359 (622)
Q Consensus 307 v~~l~~~~~~~~~~i~~~~-----------------------~~~~~~veval~~-s---~~~~~~~~~SFVN~I~T~~G 359 (622)
+..+-+.... .+.+.+.. +..++.++--+.- + .....+.++-|||+.+...
T Consensus 217 i~~i~G~~~~-~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~- 294 (367)
T 3h4l_A 217 ISSVFGAGGM-RGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEY- 294 (367)
T ss_dssp HHHHHCTTTT-TTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECC-
T ss_pred HHHHhCHHHH-hccEEEecccccccccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecC-
Confidence 8777664321 22222222 2234555422221 1 1122456899999999765
Q ss_pred ccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCC
Q 007003 360 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (622)
Q Consensus 360 GTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~Fe 414 (622)
..|.++|++..+... + ...=.+++++.++.-.+|
T Consensus 295 --------~~l~~ai~~~y~~~~--~-----------~~~P~~~L~l~~~p~~vD 328 (367)
T 3h4l_A 295 --------STLLKCCNEVYKTFN--N-----------VQFPAVFLNLELPMSLID 328 (367)
T ss_dssp --------HHHHHHHHHHHHTTC--S-----------SCBCCEEEEEECCGGGEE
T ss_pred --------HHHHHHHHHHHHhcC--C-----------CCCcEEEEEEEcChHHcc
Confidence 356777766554422 1 123368888888754444
No 23
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.93 E-value=1.1e-25 Score=238.03 Aligned_cols=244 Identities=21% Similarity=0.255 Sum_probs=188.3
Q ss_pred cceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCCC
Q 007003 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPATN 158 (622)
Q Consensus 81 ~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~g 158 (622)
.|+.|.+...-+-.+|..| ..+.++++|+|+||+|+ + ++.|.|+++.+| .|+|.|||.|||.+.
T Consensus 4 ~I~~L~~~~~~~I~agevi-----~~~~~~v~ELi~NaidA---~-a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~----- 69 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVV-----ERPASVVKELVENSLDA---G-ATRIDIDIERGGAKLIRIRDNGCGIKKDE----- 69 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHC-----SSHHHHHHHHHHHHHHT---T-CSEEEEEEEGGGTSEEEEEECSCCCCGGG-----
T ss_pred cceECCHHHHHHHhcCCch-----hCHHHHHHHHHHHHHHC---C-CCeEEEEEEeCCceEEEEEEcCCCcCHHH-----
Confidence 4888888888888888886 57899999999999997 4 899999999766 799999999999986
Q ss_pred cchHHHhhhhccCCCCCCCCCCce-eeecCcccccchhhhhccCceEEEEEeCC--EEEEEEEeCCcc-cccceeeecCC
Q 007003 159 KSALETVLTVLHAGGKFGGSSSGY-SVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKP-VTTLTCHVLPV 234 (622)
Q Consensus 159 ~~~~e~v~t~lhag~kf~~~~~~y-~~sgG~~GvGls~vNalS~~~~V~t~r~g--~~y~q~f~~G~~-~~~~~~~~~~~ 234 (622)
++.+|.. |+++|+.+.++.+ ..+.|++|+|+++++++| +++|+|++++ ..|++ +.+|.. ..+..
T Consensus 70 ---l~~~~~~-~~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~-~~~g~~~~~~~~------ 137 (333)
T 1b63_A 70 ---LALALAR-HATSKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQA-YAEGRDMNVTVK------ 137 (333)
T ss_dssp ---HHHHHST-TCCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEE-EEETTTTEEEEE------
T ss_pred ---HHHhhhc-ccccCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEE-EEcCCcceEeee------
Confidence 4467765 6788886421233 357899999999999999 7999999876 35666 555543 22221
Q ss_pred CCCCCCCcEEEEE------eCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCC-----cH
Q 007003 235 DSKDRQGTRIRFW------PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG-----GL 303 (622)
Q Consensus 235 ~~~~~~GT~V~F~------PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~-----Gl 303 (622)
+...++||+|+|+ |++.+|..+...+++.|.++++++|+++|+++|.|.++. +..+.+++ ++
T Consensus 138 ~~~~~~GT~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-------~~~~~~~~~~~~~~~ 210 (333)
T 1b63_A 138 PAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG-------KIVRQYRAVPEGGQK 210 (333)
T ss_dssp EECCCSEEEEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-------EEEEEECCCCTTCCT
T ss_pred cccCCCCCEEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC-------EEEEecCCCCCCchH
Confidence 1245799999999 999999655556788999999999999999999998853 34566654 68
Q ss_pred HHHHHHHccCCCCCCceeEEEeeccceEEEEEEEecC--CCC-CceeeeeeCceeccC
Q 007003 304 EEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCS--DAY-SDTMLGYANSIRTID 358 (622)
Q Consensus 304 ~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~~s~--~~~-~~~~~SFVN~I~T~~ 358 (622)
.+++..+.+. ....+.+.+..+.+++.++..+.+.. .++ .+.++.|||+++..+
T Consensus 211 ~~~i~~i~G~-~~~~~li~i~~~~~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~ 267 (333)
T 1b63_A 211 ERRLGAICGT-AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD 267 (333)
T ss_dssp HHHHHHHHCH-HHHHHEEEEEEEETTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC
T ss_pred HHHHHHHhCh-hhHhheEEEEecCCCEEEEEEEEcCccccCCCCCcEEEEECCEEecC
Confidence 8888887642 22224566777777888887777763 134 567999999999876
No 24
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.93 E-value=2.3e-27 Score=264.29 Aligned_cols=281 Identities=16% Similarity=0.169 Sum_probs=199.6
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCC-CCeEEEEEeCCC------eEEEEECCCCccCC
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY-ASNIEVALLADN------SVSVADNGRGIPID 152 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~-~~~I~V~i~~dg------~IsV~DnGrGIP~~ 152 (622)
++++.++..|+++++|+||+.+.+...|++++.|||+||+|+...|. ...|.|++..++ .|+|.|||+|||.+
T Consensus 5 ~~~k~isi~eff~~~~~l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 84 (530)
T 2zbk_B 5 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 84 (530)
T ss_dssp ---------CGGGTCCGGGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HHhhhcChhheeecCCCceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHH
Confidence 46677888899999999999888778999999999999999976541 227888888644 79999999999988
Q ss_pred CcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccC-----ceEEEEEeCCE--EEEEEE--e----
Q 007003 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE-----SLEVTVWRDGM--EYHQKY--S---- 219 (622)
Q Consensus 153 ~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~-----~~~V~t~r~g~--~y~q~f--~---- 219 (622)
.. +.+|..+++++|+. +..+.|.+|+|+++++.+++ .++|++..++. .+.+.+ .
T Consensus 85 ~l--------~~iF~~f~~tsk~~-----~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~ 151 (530)
T 2zbk_B 85 EV--------PNAFGRVLYSSKYV-----NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN 151 (530)
T ss_dssp GS--------HHHHTSCCCSCCCC-----CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTT
T ss_pred HH--------HHHhccccccCCcc-----cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEeccccc
Confidence 64 46899988998873 23567889999999999997 58898887642 444443 2
Q ss_pred CCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCH-HHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEE
Q 007003 220 RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF 298 (622)
Q Consensus 220 ~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~-~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~ 298 (622)
.|.. .+.... + ....++||+|+|+ |..+ .++. ..+.++++++|++||+++|.|.+++ .+.|+
T Consensus 152 ~g~~-~~~~~~--~-~~~~~~GT~V~v~-----l~~~-~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~-------~~~~~ 214 (530)
T 2zbk_B 152 EPII-VERGSV--E-NTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPE-------GNVTY 214 (530)
T ss_dssp EEEE-EEEEEE--E-CCSSCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCCEEEECTT-------SCEEE
T ss_pred CCcc-cccccc--C-CCCCCCCcEEEEE-----eccc-hhhHHHHHHHHHHHHHHHCCCcEEEEEECC-------CeEEE
Confidence 2222 121111 0 2235799999999 4332 2455 7899999999999999999999864 24677
Q ss_pred eCCcHHHHHHHHccCCCCCCceeEEEeeccceEEEEEEE-ecCCCCCc-eeeeeeCceeccCCccchHHHHHHHHHHHHH
Q 007003 299 FAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQ-WCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLNS 376 (622)
Q Consensus 299 ~~~Gl~dyv~~l~~~~~~~~~~i~~~~~~~~~~veval~-~s~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~al~~~ln~ 376 (622)
+++.. +..|- .+........|+.++.+++ |. .++.. .+.+|+|+++|..||+|+++|++++
T Consensus 215 ~~~~~---------~~lp~-~~~~~~~~~~Gi~~~~~l~~~~-~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~------ 277 (530)
T 2zbk_B 215 YPRLT---------NKIPK-PPQEVKPHPYGVDREEIKILIN-NLKRDYTIKEFLVNEFQSIGDTTADKILELA------ 277 (530)
T ss_dssp ECCCC---------CCCCC-CCCCCCCCGGGCCHHHHHHHHT-TCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT------
T ss_pred ecCcc---------ccccC-CcceeccCCCChhHHHHHHHHh-ccCCCceeHhhhcCccccccHHHHHHHHHhh------
Confidence 76631 11010 0111122345666666665 55 56666 7899999999999999999998864
Q ss_pred HHhhccCCCCC-CCCCCHHhHhcccEEEEEEe-ecCCC
Q 007003 377 LGKKSKTVKDK-DISLSGEHVREGLTCIISVR-VPNPE 412 (622)
Q Consensus 377 ~~kk~~~~k~~-~~~l~~~diregL~~vvsv~-i~nP~ 412 (622)
++.+++ +.+++++|++++|.++++++ +++|.
T Consensus 278 -----gl~~~~~~~~l~~~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 278 -----GLKPNKKVKNLTEEEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp -----TCCSSCBSSCCCHHHHHHHHHHHHHCCCCCCCC
T ss_pred -----CCCCCCCcccCCHHHHHHHHHHHHhccCCCCCC
Confidence 443443 45899999999999999998 77764
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.91 E-value=8.5e-24 Score=226.02 Aligned_cols=284 Identities=16% Similarity=0.218 Sum_probs=178.1
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCCCcCCC
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPIDLHPAT 157 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~~h~~~ 157 (622)
..|+.|.....-+.++|++| ..+.++++|||+||+|+ + ++.|.|.+..+| .|+|.|||+|||.+..+
T Consensus 13 ~~I~~L~~~~~~~i~agevi-----~~~~~vl~eLv~NAiDA---~-a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~-- 81 (365)
T 1h7s_A 13 KAIKPIDRKSVHQICSGQVV-----LSLSTAVKELVENSLDA---G-ATNIDLKLKDYGVDLIEVSDNGCGVEEENFE-- 81 (365)
T ss_dssp ----------------CEEE-----CCHHHHHHHHHHHHHHT---T-CSEEEEEEEGGGTSEEEEEECSCCCCGGGSG--
T ss_pred hhhccCCHHHHHHhcCCCch-----hhHHHHHHHHHHHHHHC---C-CCEEEEEEEeCCcEEEEEEECCCCcCHHHHH--
Confidence 46999999999999999996 56799999999999997 4 889999998655 89999999999998754
Q ss_pred CcchHHHhhhhccCCCCCCCCCCcee-eecCcccccchhhhhccCceEEEEEeCCE--EEEEEEe-CCcccccceeeecC
Q 007003 158 NKSALETVLTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDGM--EYHQKYS-RGKPVTTLTCHVLP 233 (622)
Q Consensus 158 g~~~~e~v~t~lhag~kf~~~~~~y~-~sgG~~GvGls~vNalS~~~~V~t~r~g~--~y~q~f~-~G~~~~~~~~~~~~ 233 (622)
.+|.. |+++|+.+.++.+. .+.|+||+|+++++++| +++|+|++++. .|+++|. +|......
T Consensus 82 ------~~f~~-~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~------ 147 (365)
T 1h7s_A 82 ------GLTLK-HHTSKIQEFADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT------ 147 (365)
T ss_dssp ------GGGC-----------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE------
T ss_pred ------HHhhh-ccccccccccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec------
Confidence 35554 67788865434565 58999999999999999 99999998775 7999997 57654321
Q ss_pred CCCCCCCCcEEEEE------eCccc-cccccccCHHHHHHHHHHHhhhCCCcEEEEeeCCCCCCCCceeEEEeCC--cHH
Q 007003 234 VDSKDRQGTRIRFW------PDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLE 304 (622)
Q Consensus 234 ~~~~~~~GT~V~F~------PD~~i-F~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~~~~~~~~~~~f~~~~--Gl~ 304 (622)
+...++||+|+|+ |.+.+ |..+...+++.|.++++++|+++|+++|.|.++.... .....|..++ ++.
T Consensus 148 -~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~--~~~~~~~~~~~~~~~ 224 (365)
T 1h7s_A 148 -PYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQG--KRQPVVCTGGSPSIK 224 (365)
T ss_dssp -ECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCCCSSHH
T ss_pred -ccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCC--cEEEEEEcCCCchHH
Confidence 2345799999998 33333 6444456788999999999999999999999876221 1245677765 688
Q ss_pred HHHHHHccCCCCCCceeEEEee------------------ccceEEEEEEEecC----CCCCceeeeeeCceeccCCccc
Q 007003 305 EYVQWLNTDKKPLHDVVGFRKD------------------VDGITIDLALQWCS----DAYSDTMLGYANSIRTIDGGTH 362 (622)
Q Consensus 305 dyv~~l~~~~~~~~~~i~~~~~------------------~~~~~veval~~s~----~~~~~~~~SFVN~I~T~~GGTH 362 (622)
+.+..+.+... ..+.+.+..+ ..++.+.--+.-.. ......++-|||+.+...
T Consensus 225 ~~i~~i~G~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~---- 299 (365)
T 1h7s_A 225 ENIGSVFGQKQ-LQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDP---- 299 (365)
T ss_dssp HHHHHHHCHHH-HHTEEECCCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECC----
T ss_pred HHHHHhcChHh-HhceEEEeccCCcccccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecC----
Confidence 88887755310 0111122111 13455553222111 122356899999999764
Q ss_pred hHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEEEeecCCCCC
Q 007003 363 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 414 (622)
Q Consensus 363 v~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvsv~i~nP~Fe 414 (622)
..|.++|++..+.... ...=.+++++.++.-.+|
T Consensus 300 -----~~l~~ai~~~y~~~~~-------------~~~P~~~L~l~~~p~~vD 333 (365)
T 1h7s_A 300 -----AKVCRLVNEVYHMYNR-------------HQYPFVVLNISVDSECVD 333 (365)
T ss_dssp -----HHHHHHHHHHHHTTCT-------------TCBCCEEEEEECCGGGEE
T ss_pred -----HHHHHHHHHHHHhhCc-------------cCCcEEEEEEEeChHHcc
Confidence 3466666655443211 034477888888644444
No 26
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.84 E-value=1.1e-19 Score=200.10 Aligned_cols=183 Identities=19% Similarity=0.241 Sum_probs=135.4
Q ss_pred ccceeccchhhHhhCCCeeeccCCCChhhHHHHHHHHhhHHhhhcC-CCCeEEEEEeCCC------eEEEEECCCCccCC
Q 007003 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLADN------SVSVADNGRGIPID 152 (622)
Q Consensus 80 ~~i~~L~~~E~Vr~RP~mYiGs~~~~gL~~lv~EildNaiDe~~~g-~~~~I~V~i~~dg------~IsV~DnGrGIP~~ 152 (622)
++++.++..|+++++|+||+.+.+...|++++.|||+||+|+...| ....|.|++..++ .|+|+|||+|||.+
T Consensus 6 ~~~k~is~~eff~~~~~~~~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e 85 (471)
T 1mu5_A 6 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ 85 (471)
T ss_dssp -----CCHHHHHHHCGGGTTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGG
T ss_pred HHHhhcCHHHhhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHH
Confidence 4677888999999999999999988999999999999999997654 1227999988643 69999999999988
Q ss_pred CcCCCCcchHHHhhhhccCCCCCCCCCCceeeecCcccccchhhhhccCc-----eEEEEEeCCE--EEEEEEe------
Q 007003 153 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDGM--EYHQKYS------ 219 (622)
Q Consensus 153 ~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~sgG~~GvGls~vNalS~~-----~~V~t~r~g~--~y~q~f~------ 219 (622)
. ++.+|..+++++|+.. + .+.|.+|+|+++++.+++. ++|++..++. .+.+++.
T Consensus 86 ~--------l~~iF~~f~~tsk~~~----~-~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~ 152 (471)
T 1mu5_A 86 E--------VPNAFGRVLYSSKYVN----R-QTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKN 152 (471)
T ss_dssp G--------HHHHHHCCCCC-CCCC----S-CCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTC
T ss_pred H--------HHHHhccccccccccc----c-cCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccccc
Confidence 6 4578998888888732 1 2446699999999999987 8998887642 4444432
Q ss_pred CCcccccceeeecCCCCCCCCCcEEEEEeCccccccccccCH-HHHHHHHHHHhhhCCCcEEEEeeC
Q 007003 220 RGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKE 285 (622)
Q Consensus 220 ~G~~~~~~~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~~d~-~~i~~rl~elA~lnpgl~I~l~d~ 285 (622)
.|.+.... +. + ....++||+|+|+ |..+ ..+. +.|.++++++|+++|+++|.|.++
T Consensus 153 ~g~~~~~~-~~--~-~~~~~~GT~V~v~-----l~~~-~~e~~~~I~~~l~~~al~~p~v~i~l~~~ 209 (471)
T 1mu5_A 153 EPIIVERG-SV--E-NTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDP 209 (471)
T ss_dssp CEEEEEEE-EE--E-CCTTCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCEEEEECT
T ss_pred CCcccccc-cc--c-CCCCCCCEEEEEE-----EcCC-cchHHHHHHHHHHHHHhHCCCeEEEEEEC
Confidence 23332221 11 0 2245799999999 4322 2344 689999999999999999999976
No 27
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.17 E-value=1e-10 Score=116.97 Aligned_cols=161 Identities=17% Similarity=0.228 Sum_probs=103.3
Q ss_pred hhHHHHHHHHhhHHhhhc-------C-------CCCeEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccC
Q 007003 107 LHHLVYEILDNAVDEAQA-------G-------YASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~-------g-------~~~~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (622)
-...++|||.||+|+... + ..-.|.|..+. ...|+|.|||.||+.+.. +..|.++.+
T Consensus 33 ~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl--------~~~l~~ia~ 104 (228)
T 3t0h_A 33 KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADL--------INNLGTIAK 104 (228)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HTGGGSCHH
T ss_pred cHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHH--------HHHHHhhcc
Confidence 367899999999999742 1 12245555554 348999999999998753 223333222
Q ss_pred CCC--CCCC--CCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEE
Q 007003 172 GGK--FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 246 (622)
Q Consensus 172 g~k--f~~~--~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F 246 (622)
+++ |.+. +..-..+.|++|+|+.++-++|++++|.|+.++ ..|.+++..|.... ..+. + +...++||+|++
T Consensus 105 S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~-v~~~--~-~~~~~~GT~I~v 180 (228)
T 3t0h_A 105 SGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFT-VRTD--T-GEPMGRGTKVIL 180 (228)
T ss_dssp HHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEE-EEEC--C-SSCCSSEEEEEE
T ss_pred ccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEE-Eeec--C-CCCCCCCcEEEE
Confidence 221 2110 001135789999999999999999999998754 56887777664321 1111 1 234579999999
Q ss_pred EeCccccccccccCHHHHHHHHHHHh--hhCCCcEEEEeeC
Q 007003 247 WPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRKE 285 (622)
Q Consensus 247 ~PD~~iF~~~~~~d~~~i~~rl~elA--~lnpgl~I~l~d~ 285 (622)
..-... +.-.+...|.+.++.+| ..+| |++..+
T Consensus 181 ~Lk~~~---~E~~e~~~i~~iv~~~a~~l~~P---i~~~~~ 215 (228)
T 3t0h_A 181 HLKEDQ---TEYLEERRIKEIVKKHSQFIGYP---ITLFVE 215 (228)
T ss_dssp EECGGG---GGGGSHHHHHHHHHHHSTTCSSC---EEECCC
T ss_pred EECCch---hhhhhHHHHHHHHHHHHhhCCCC---eEEeec
Confidence 822111 01134578999999999 6677 666544
No 28
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.15 E-value=1.5e-10 Score=117.27 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=104.6
Q ss_pred hHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
...++|||.||.|+... +..-.|.|..+. ...|+|.|||.||+.+.. +..|+++.++
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl--------~~~l~~ia~S 133 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADL--------INNLGTIAKS 133 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HTHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHH--------HHHHHhhccc
Confidence 57899999999999642 112256666664 348999999999998753 2233332222
Q ss_pred CC--CCCC--CCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEEEE
Q 007003 173 GK--FGGS--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 247 (622)
Q Consensus 173 ~k--f~~~--~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~F~ 247 (622)
++ |.+. ...-..+.|++|+|+.++-++|++++|.|+.++ ..|..+...|.... ..+. + +...++||+|++.
T Consensus 134 ~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~-v~~~--~-~~~~~~GT~I~l~ 209 (256)
T 3o0i_A 134 GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFT-VRTD--T-GEPMGRGTKVILH 209 (256)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEE-EEEC--C-SSCCSSEEEEEEE
T ss_pred cccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceEE-EeeC--C-CCCCCCCcEEEEE
Confidence 21 2110 001135789999999999999999999998754 56777777665321 1111 1 2345799999998
Q ss_pred eCccccccccccCHHHHHHHHHHHh--hhCCCcEEEEeeC
Q 007003 248 PDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRKE 285 (622)
Q Consensus 248 PD~~iF~~~~~~d~~~i~~rl~elA--~lnpgl~I~l~d~ 285 (622)
-++..+.-.+...|.+.++.+| ..+| |++..+
T Consensus 210 ---LK~~~~e~~e~~~I~~iv~k~s~~l~~P---I~~~~~ 243 (256)
T 3o0i_A 210 ---LKEDQTEYLEERRIKEIVKKHSQFIGYP---ITLFVE 243 (256)
T ss_dssp ---ECGGGGGGGCHHHHHHHHHHHCTTCSSC---EEECCC
T ss_pred ---EcCcchhhccHHHHHHHHHHHHhhCCCC---eEEeee
Confidence 2333222246678999999999 6677 555544
No 29
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.14 E-value=1.6e-10 Score=116.14 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=100.0
Q ss_pred hhHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccC
Q 007003 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (622)
...+|+|||+||+|+... .....|.|.++.+ ..|+|.|||.||+.+. ++..|..+.+
T Consensus 48 ~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~DnG~GMs~ed--------l~~~~~~ia~ 119 (235)
T 2ior_A 48 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE--------VIDHLGTIAK 119 (235)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHH--------HHHHHTTCCC
T ss_pred HHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEECCCCCCHHH--------HHHHHHHHcc
Confidence 457899999999999631 1124577777754 4799999999999875 3345555433
Q ss_pred CCC--CCCC-C---CceeeecCcccccchhhhhccCceEEEEEeCCE----EEEEEEeCCcccccceeeecCCCCCCCCC
Q 007003 172 GGK--FGGS-S---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM----EYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (622)
Q Consensus 172 g~k--f~~~-~---~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~----~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 241 (622)
+++ |.+. . ..-....|+.|+|+.++-+++++++|.|+..+. .|..++..+... ...+ .....+|
T Consensus 120 S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~i~~-----~~~~~~G 193 (235)
T 2ior_A 120 SGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVAD-----ITKEDRG 193 (235)
T ss_dssp TTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE-EEEE-----ECCCSCE
T ss_pred ccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE-EEee-----CCCCCCC
Confidence 332 2100 0 011235699999999888888999999997653 677777654322 1111 1244799
Q ss_pred cEEEEE--eCccccccccccCHHHHHHHHHHHh--hhCC
Q 007003 242 TRIRFW--PDKQVFTTAIQFDHNTIAGRIRELA--FLNP 276 (622)
Q Consensus 242 T~V~F~--PD~~iF~~~~~~d~~~i~~rl~elA--~lnp 276 (622)
|+|++. ++...| ++...|.+.++.+| ..+|
T Consensus 194 T~V~v~Lk~~~~~~-----~e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 194 TEITLHLREGEDEF-----LDDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp EEEEEEECTTCGGG-----GCHHHHHHHHHHHTTSCCSC
T ss_pred EEEEEEEcCchhhh-----CCHHHHHHHHHHHhccCCCC
Confidence 999976 333223 46788999999999 5566
No 30
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.07 E-value=4.4e-09 Score=117.57 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=102.5
Q ss_pred hhHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccC
Q 007003 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (622)
....++|||.||+|+... .....|.|.++.+ +.|+|.|||.||+.+. +...|+++.+
T Consensus 28 ~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~ed--------l~~~l~tiA~ 99 (559)
T 1y4s_A 28 KEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE--------VIDHLGTIAK 99 (559)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHHH--------HHHHHSCCSC
T ss_pred hHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEECCCCCCHHH--------HHHHHhhhcc
Confidence 357899999999999721 1235788888865 4899999999999875 2334555333
Q ss_pred CCC--C----CCCCCceeeecCcccccchhhhhccCceEEEEEeCC----EEEEEEEeCCcccccceeeecCCCCCCCCC
Q 007003 172 GGK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (622)
Q Consensus 172 g~k--f----~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g----~~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 241 (622)
+++ | .+....-..+.|+.|+|..++-+++++++|.|+..+ ..|..+...|... ...+. ....+|
T Consensus 100 Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~-----~~~~~G 173 (559)
T 1y4s_A 100 SGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRG 173 (559)
T ss_dssp CCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEE-EEEEE-----CCCSCE
T ss_pred cccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCee-EEeEC-----CCCCCC
Confidence 332 2 110001234679999999999999999999998765 3566666554322 12111 234799
Q ss_pred cEEEEEeC--ccccccccccCHHHHHHHHHHHh--hhCCCcEE
Q 007003 242 TRIRFWPD--KQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 280 (622)
Q Consensus 242 T~V~F~PD--~~iF~~~~~~d~~~i~~rl~elA--~lnpgl~I 280 (622)
|+|++... ..-| ++..+|.+.++.+| ..+| +.+
T Consensus 174 T~I~L~Lk~d~~Ef-----le~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 174 TEITLHLREGEDEF-----LDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp EEEEEEECTTCGGG-----SCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred eEEEEEEcchhhhc-----chHHHHHHHHHHHhccCCCc-eEE
Confidence 99998732 2222 35678999999999 6788 666
No 31
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.03 E-value=1.5e-09 Score=107.89 Aligned_cols=160 Identities=18% Similarity=0.256 Sum_probs=101.6
Q ss_pred hHHHHHHHHhhHHhhhc------------CCCC--eEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA------------GYAS--NIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~------------g~~~--~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
..+++|||+||+|+... +..+ .|.|.++. ...|+|.|||.||+.+. +...|..+.++
T Consensus 28 ~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~ed--------l~~~l~~ia~S 99 (220)
T 2wer_A 28 EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAE--------LINNLGTIAKS 99 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHH--------HHHHTTTSCCT
T ss_pred hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHH--------HHHHHHhHhcc
Confidence 57999999999999652 1123 45666654 34899999999999874 22344443333
Q ss_pred CC------CCCCCCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEE
Q 007003 173 GK------FGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (622)
Q Consensus 173 ~k------f~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 245 (622)
++ .... .-...-|..|+|..++-+++++++|.++..+ ..|..++.+|... ...+. +......+||+|+
T Consensus 100 ~~~~f~~k~~~~--~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~GT~I~ 174 (220)
T 2wer_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILR 174 (220)
T ss_dssp THHHHHHHHTTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEE-EEEEC--SSSCCCSSEEEEE
T ss_pred cchhHHHHhhcc--CCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCce-Eeecc--cCCCCCCCCeEEE
Confidence 21 1111 1124678999999999999999999998754 4566666654322 11111 0022457899999
Q ss_pred EEeC--ccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCC
Q 007003 246 FWPD--KQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (622)
Q Consensus 246 F~PD--~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~ 286 (622)
+... ...| ++...|.+.++.+|..-+ .-|+++.++
T Consensus 175 l~Lk~~~~~~-----~e~~~i~~~v~~~a~~l~-~PI~~~~~~ 211 (220)
T 2wer_A 175 LFLKDDQLEY-----LEEKRIKEVIKRHSEFVA-YPIQLVVTK 211 (220)
T ss_dssp EEECTTCGGG-----GCHHHHHHHHHHHCTTCC-SCEEECCCC
T ss_pred EEECcchHHh-----CCHHHHHHHHHHHHhcCC-CceEEEecc
Confidence 8832 2222 467789999999884432 457777654
No 32
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.00 E-value=4.5e-09 Score=118.89 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=100.5
Q ss_pred hHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
...++|+|.||+|+... .....|.|.++.+ +.|+|.|||.||+.+. +...|+++.++
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~ed--------l~~~l~tiA~S 100 (624)
T 2ioq_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE--------VIDHLGTIAKS 100 (624)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEECCCCCCHHH--------HHHHHHhhccc
Confidence 57899999999999721 1124788888864 4899999999999875 23345553333
Q ss_pred CC--C----CCCCCceeeecCcccccchhhhhccCceEEEEEeCC----EEEEEEEeCCcccccceeeecCCCCCCCCCc
Q 007003 173 GK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (622)
Q Consensus 173 ~k--f----~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g----~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT 242 (622)
++ | .+....-..+.|+.|+|..++-++|++++|.|+..+ ..|..+...|... ...+. ....+||
T Consensus 101 g~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~~~-----~~~~~GT 174 (624)
T 2ioq_A 101 GTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRGT 174 (624)
T ss_dssp --------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCC-EEEEE-----CCSSSEE
T ss_pred ccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeE-EEEEC-----CCCCCCe
Confidence 32 2 110001124679999999999999999999999765 3566666554322 22111 2347999
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHh--hhCCCcEE
Q 007003 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTI 280 (622)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~rl~elA--~lnpgl~I 280 (622)
+|++...... ..-++..+|.+.++.+| ..+| +.+
T Consensus 175 ~I~L~Lk~d~---~Efl~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 175 EITLHLREGE---DEFLDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp EEEEEECTTC---GGGGCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred EEEEEEcchh---hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 9998832211 11134678999999999 6778 666
No 33
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=98.98 E-value=3.1e-09 Score=106.92 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=101.1
Q ss_pred hhHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccC
Q 007003 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHA 171 (622)
Q Consensus 107 L~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lha 171 (622)
....++|||.||+|+... +....|.|.++.+ ..|+|.|||.||+.+. +...|..+-.
T Consensus 33 ~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~ed--------l~~~l~~ia~ 104 (236)
T 2gqp_A 33 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE--------LVKNLGTIAK 104 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHCC--
T ss_pred chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHH--------HHHHHhhhcc
Confidence 468899999999999641 1124677777754 3799999999999875 2234544333
Q ss_pred CCC--C----CCCC---CceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCC
Q 007003 172 GGK--F----GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQG 241 (622)
Q Consensus 172 g~k--f----~~~~---~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~G 241 (622)
+++ | .... ..-...-|..|+|..++-.++++++|.|+..+ ..|..+...|.. ...+. +......+|
T Consensus 105 Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~~--~i~~~--~~~~~~~~G 180 (236)
T 2gqp_A 105 SGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRG 180 (236)
T ss_dssp -------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSCE--EEEEC--TTCSCSSSE
T ss_pred cccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCEE--EEEec--cCCCCCCCC
Confidence 332 2 1100 01123458899999999999999999998754 345555444332 11111 111235799
Q ss_pred cEEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCC
Q 007003 242 TRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (622)
Q Consensus 242 T~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~ 286 (622)
|+|++...... ..-++...|.+.++.+|-..| ..|.+++++
T Consensus 181 T~I~l~Lk~~~---~~~le~~~i~~lv~~~s~~i~-~pI~~~~~~ 221 (236)
T 2gqp_A 181 TTITLVLKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSK 221 (236)
T ss_dssp EEEEEEECGGG---GGGGCHHHHHHHHHHHHTTCS-SCEEEEEEC
T ss_pred eEEEEEECCcc---hhhChHHHHHHHHHHHhhhCC-CceEEeeee
Confidence 99998732211 111367889999999885443 567887765
No 34
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.94 E-value=5.3e-09 Score=106.80 Aligned_cols=161 Identities=18% Similarity=0.273 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHhhHHhhhc------------CCCCeEEEEE--eC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhcc
Q 007003 106 GLHHLVYEILDNAVDEAQA------------GYASNIEVAL--LA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLH 170 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~------------g~~~~I~V~i--~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lh 170 (622)
....+++|||.||+|+... +..+.|.|.| +. ...|+|.|||.||+.+. +...|..+-
T Consensus 68 ~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~ed--------L~~~l~~ia 139 (264)
T 1yc1_A 68 NKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKAD--------LINNLGTIA 139 (264)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHH--------HHHHHHhhc
Confidence 3457999999999999641 0125555555 43 34899999999999875 223444433
Q ss_pred CCCC--C----CCCCCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcE
Q 007003 171 AGGK--F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTR 243 (622)
Q Consensus 171 ag~k--f----~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~ 243 (622)
++++ | ... .-....|..|+|..++-+++++++|.|+..+ ..|..+...+... ...+. + ....++||+
T Consensus 140 ~S~~~~f~~~l~~~--~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~-~i~~~--~-~~~~~~GT~ 213 (264)
T 1yc1_A 140 KSGTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTK 213 (264)
T ss_dssp TSCHHHHHHHHHTT--CCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EEEEC--C-SSCCSSEEE
T ss_pred cccchhhhhhhccc--cchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceE-EEeec--C-CCCCCCCeE
Confidence 3322 1 001 1123678999999999999999999998754 4566666554322 11111 1 224579999
Q ss_pred EEEEe--CccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCC
Q 007003 244 IRFWP--DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (622)
Q Consensus 244 V~F~P--D~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~ 286 (622)
|++.. |...| ++...|.+.++.+|-.-| .-|++++++
T Consensus 214 I~l~Lk~~~~e~-----~e~~~i~~lv~k~s~fi~-~PI~~~~~~ 252 (264)
T 1yc1_A 214 VILHLKEDQTEY-----LEERRIKEIVKKHSQFIG-YPITLFVEK 252 (264)
T ss_dssp EEEEECGGGGGG-----GSHHHHHHHHHHHTTTCS-SCEEECCCC
T ss_pred EEEEECCchhhh-----hhHHHHHHHHHHHHhhCC-CCEEEeecc
Confidence 99883 22222 467889999999985443 557887765
No 35
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=98.79 E-value=7.4e-08 Score=109.46 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=90.9
Q ss_pred hHHHHHHHHhhHHhhhc------------CCC--CeEEEEEeCCC-eEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA------------GYA--SNIEVALLADN-SVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~------------g~~--~~I~V~i~~dg-~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
...++|+|.||+|+... +.+ ..|.|.++.++ .|+|.|||.||+.+. +...|+++-.+
T Consensus 47 eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~DnGiGMt~ed--------l~~~l~tIA~S 118 (666)
T 2o1u_A 47 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE--------LVKNLGTIAKS 118 (666)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCCHHH--------HHHHTTC----
T ss_pred hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEECCCCCCHHH--------HHHHHhhhccc
Confidence 46899999999999720 113 46888887654 899999999999874 22334433223
Q ss_pred CC--C----CCCC--C-ceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCc
Q 007003 173 GK--F----GGSS--S-GYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (622)
Q Consensus 173 ~k--f----~~~~--~-~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT 242 (622)
|+ | .+.. . .-...-|..|+|..++-+++++++|.|+..+ ..|..+...|.. ...+. ..+....+||
T Consensus 119 Gtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~--ti~~~--~~~~~~~~GT 194 (666)
T 2o1u_A 119 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGT 194 (666)
T ss_dssp ---------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCC--EEEEC--TTCCSSSSEE
T ss_pred ccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeE--EEEec--ccCCCCCCCe
Confidence 22 2 1100 0 1123569999999999999999999998754 345544444333 12111 1112357999
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHh--hhCCCcEEEEee
Q 007003 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELA--FLNPKLTIALRK 284 (622)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~rl~elA--~lnpgl~I~l~d 284 (622)
+|++...... +.-++..+|.+.++.+| ..+| |.|.+
T Consensus 195 ~I~L~Lk~d~---~Efle~~~I~~ivkkys~fi~~P---I~~~~ 232 (666)
T 2o1u_A 195 TITLVLKEEA---SDYLELDTIKNLVKKYSQFINFP---IYVWS 232 (666)
T ss_dssp EEEEEECTTT---TTSSSTTHHHHHHHHHSTTCCSC---EEEEE
T ss_pred EEEEEEccch---hhhccHHHHHHHHHHHHhhCCCc---eEEec
Confidence 9998732211 11134678899999999 6677 55543
No 36
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=98.70 E-value=2e-07 Score=95.52 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=100.8
Q ss_pred hHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
...++|||.||.|+... +..-.|.|.++. ...|+|.|||.||+.+.. ...|+.+-.+
T Consensus 48 ~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL--------~~~LgtIa~S 119 (281)
T 3peh_A 48 EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDL--------INNLGTIAKS 119 (281)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHH--------HHHHHHHHhH
Confidence 56789999999999741 123467777775 458999999999998752 2233333223
Q ss_pred CC--C-------CCCCCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCc
Q 007003 173 GK--F-------GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (622)
Q Consensus 173 ~k--f-------~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT 242 (622)
|+ | ..+ ....|+.|+|..++=+++++++|.|+.++ ..|..+...|... .+.. .+.+....+||
T Consensus 120 gtk~f~e~l~~~~~d----~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~f-ti~~--~~~~~~~~~GT 192 (281)
T 3peh_A 120 GTSNFLEAISKSGGD----MSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAKF-TIYK--DPRGATLKRGT 192 (281)
T ss_dssp CHHHHHHHHHHTTCC----STTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSCE-EEEE--CTTCSTTSSEE
T ss_pred hhhhHHHhhhccccc----cccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCccE-EEEE--cCCCCCCCCCe
Confidence 21 1 111 23569999999999999999999998754 4566655554321 1111 11123457999
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCC
Q 007003 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (622)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~ 286 (622)
+|+......-- .-++..+|.+.++.++-.-| ..|.|..++
T Consensus 193 ~I~L~Lked~~---e~le~~~ik~ivkkys~fi~-~pI~l~~~k 232 (281)
T 3peh_A 193 RISLHLKEDAT---NLLNDKKLMDLISKYSQFIQ-FPIYLLHEN 232 (281)
T ss_dssp EEEEEECGGGG---GGGSHHHHHHHHHHHTTTCC-SCEEEEEEE
T ss_pred EEEEEECCchh---hhcCHHHHHHHHHHhhccCC-cceEEeeee
Confidence 99988433211 12456778888887774332 446665543
No 37
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=98.68 E-value=7.4e-08 Score=96.64 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=98.9
Q ss_pred hHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
...++|||.||.|+... +..-.|.|..+. ...++|.|||.||+.+... ..++.+-.+
T Consensus 41 ~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~--------~~LgtIA~S 112 (239)
T 3nmq_A 41 EIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLI--------NNLGTIAKS 112 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHH--------THHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHH--------HHHHHHhcc
Confidence 57899999999999642 112357777775 4589999999999987531 112222111
Q ss_pred C-C-C----CCCCCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEE
Q 007003 173 G-K-F----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (622)
Q Consensus 173 ~-k-f----~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 245 (622)
+ + | ... .-...-|+.|+|..++=.++++++|.+++++ ..|..+...+... .+... + +....+||+|+
T Consensus 113 gtk~f~e~~~~~--~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~f-ti~~~--~-~~~~~~GT~I~ 186 (239)
T 3nmq_A 113 GTKAFMEALQAG--ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSF-TVRAD--H-GEPIGRGTKVI 186 (239)
T ss_dssp HHHHHHHHHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEE-EEEEC--C-SSCCSSEEEEE
T ss_pred cchhhhhhhccc--CCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcE-EEEec--C-CCcCCCCCEEE
Confidence 1 1 1 011 0124679999999999999999999998754 4565554443221 11111 1 23447999999
Q ss_pred EEeCc--cccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCC
Q 007003 246 FWPDK--QVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (622)
Q Consensus 246 F~PD~--~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~ 286 (622)
..... .-| ++..+|.+.++.++-.-| .-|++..++
T Consensus 187 L~lk~d~~e~-----l~~~~i~~lv~kys~fi~-~pI~~~~~~ 223 (239)
T 3nmq_A 187 LHLKEDQTEY-----LEERRVKEVVKKHSQFIG-YPITLYLEK 223 (239)
T ss_dssp EEECGGGGGG-----GSHHHHHHHHHHHCTTCS-SCEEECCCS
T ss_pred EEECCChHHh-----cCHHHHHHHHHHHHhccC-CceEEeeee
Confidence 88332 223 455677777777764322 457776655
No 38
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.66 E-value=4.7e-08 Score=99.96 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=96.2
Q ss_pred hHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
...++|||.||+|+... +..-.|.|.++.+ ..|+|.|||.||+.+.. ...|+.+-.+
T Consensus 30 eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl--------~~~l~tia~S 101 (269)
T 1qy5_A 30 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREEL--------VKNLGTIAKS 101 (269)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHH--------HHHHHSCCSH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHH--------HHHhhhhccc
Confidence 35899999999999641 1224577777653 48999999999998742 2234333222
Q ss_pred -CC-CC----CC---CCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCc
Q 007003 173 -GK-FG----GS---SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGT 242 (622)
Q Consensus 173 -~k-f~----~~---~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT 242 (622)
.+ |- .. ...-...-|..|+|..++-.++.+++|.|+..+ ..|..+...|... .... +.+....+||
T Consensus 102 gtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~--i~~~--~~~~~~~~GT 177 (269)
T 1qy5_A 102 GTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFS--VIAD--PRGNTLGRGT 177 (269)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEE--EEEC--TTCSCSSSEE
T ss_pred ccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEE--EEec--cCCCcCCCCe
Confidence 11 20 00 000012458999999999999999999998754 3455444443321 1111 1112346999
Q ss_pred EEEEEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEEeeCC
Q 007003 243 RIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKED 286 (622)
Q Consensus 243 ~V~F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l~d~~ 286 (622)
+|++...... ..-++..+|.+.++.++-.-| .-|+|..++
T Consensus 178 ~I~L~Lk~d~---~e~le~~~i~~lvkkys~fi~-~PI~l~~~k 217 (269)
T 1qy5_A 178 TITLVLKEEA---SDYLELDTIKNLVKKYSQFIN-FPIYVWSSK 217 (269)
T ss_dssp EEEEEECGGG---GGGGSHHHHHHHHHTTCTTCS-SCEEEEEEC
T ss_pred EEEEEEcccc---hhhhhHHHHHHHHHhhhcccc-eeeEEeeee
Confidence 9998732211 111355677777777763332 446776654
No 39
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.2e-07 Score=104.39 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=98.5
Q ss_pred hHHHHHHHHhhHHhhhc--------------CCCCeEEEEEeCC-CeEEEEECCCCccCCCcCCCCcchHHHhhhhccCC
Q 007003 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLAD-NSVSVADNGRGIPIDLHPATNKSALETVLTVLHAG 172 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~--------------g~~~~I~V~i~~d-g~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag 172 (622)
...++|+|.||+|+... +....|.|.++.+ ..|+|.|||.||+.+.. ...|+++-.+
T Consensus 28 eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGiGMt~edl--------~~~l~tIA~S 99 (677)
T 2cg9_A 28 EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAEL--------INNLGTIAKS 99 (677)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCCHHHH--------HGGGSSSSSC
T ss_pred hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCCCCCHHHH--------HHHHHhHhcc
Confidence 45899999999999731 1234688888764 48999999999998742 2234332222
Q ss_pred C------CCCCCCCceeeecCcccccchhhhhccCceEEEEEeCC-EEEEEEEeCCcccccceeeecCCCCCCCCCcEEE
Q 007003 173 G------KFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIR 245 (622)
Q Consensus 173 ~------kf~~~~~~y~~sgG~~GvGls~vNalS~~~~V~t~r~g-~~y~q~f~~G~~~~~~~~~~~~~~~~~~~GT~V~ 245 (622)
| ++.+. .-...-|+.|+|..++=+++++++|.|++.+ ..|..+...|... ..... +.+....+||+|+
T Consensus 100 gt~~f~~kl~~~--~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~-ti~~~--~~~~~~~~GT~I~ 174 (677)
T 2cg9_A 100 GTKAFMEALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILR 174 (677)
T ss_dssp TTHHHHSCCCSS--CCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEE-EEEEC--CSSCCCSSEEEEE
T ss_pred ccHHHHHhhhcc--cchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceE-EEeec--CCCCCCCCCeEEE
Confidence 2 22211 1123579999999988888999999999765 4566555554322 11110 1123457999999
Q ss_pred EEeCccccccccccCHHHHHHHHHHHhhhCCCcEEEE
Q 007003 246 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIAL 282 (622)
Q Consensus 246 F~PD~~iF~~~~~~d~~~i~~rl~elA~lnpgl~I~l 282 (622)
......- ..-++..+|.+.++.+|-.- +.-|++
T Consensus 175 L~Lk~d~---~e~l~~~~i~~lvkkys~fi-~~PI~l 207 (677)
T 2cg9_A 175 LFLKDDQ---LEYLEEKRIKEVIKRHSEFV-AYPIQL 207 (677)
T ss_dssp EEECTTG---GGGGCHHHHHHHHHHHSTTC-SSCEEE
T ss_pred EEEcchh---hccccHHHHHHHHHHHHhhC-CCCeEE
Confidence 8832211 11135677888888877433 344666
No 40
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=98.20 E-value=4.3e-06 Score=84.25 Aligned_cols=129 Identities=17% Similarity=0.198 Sum_probs=77.1
Q ss_pred eEEEEEeC-CCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCC--CC----CCCCceeeecCcccccchhhhhccC
Q 007003 129 NIEVALLA-DNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK--FG----GSSSGYSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 129 ~I~V~i~~-dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~k--f~----~~~~~y~~sgG~~GvGls~vNalS~ 201 (622)
.|.|.++. +..|+|+|||.||+.+.. ...|+.+-.+|+ |- .. ..-....|+.|+|..++=.+++
T Consensus 120 ~I~I~~Dk~~~tLtI~DNGiGMTkeeL--------~~~LgtIA~SGtk~Fle~l~~~-~~d~~~IGqFGVGFySaFmVAd 190 (272)
T 3ied_A 120 IIKIKPDKEKKTLTITDNGIGMDKSEL--------INNLGTIAQSGTAKFLKQIEEG-KADSNLIGQFGVGFYSSFLVSN 190 (272)
T ss_dssp CEEEEEETTTTEEEEEECSCCCCHHHH--------HHHTTCSCCHHHHHHHHHHHTT-SSCTTCGGGSCCGGGGGGGTEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCCCHHHH--------HHHHHHHhhcchhhHHHHhhcc-cccccccCcccceeheeeccCC
Confidence 58888885 458999999999998752 222322222211 10 00 0002246999999999999999
Q ss_pred ceEEEEEeCCEEEEEEEeCCcccccceeeec---CCCCCCCCCcEEEEEeCc--cccccccccCHHHHHHHHHHHh
Q 007003 202 SLEVTVWRDGMEYHQKYSRGKPVTTLTCHVL---PVDSKDRQGTRIRFWPDK--QVFTTAIQFDHNTIAGRIRELA 272 (622)
Q Consensus 202 ~~~V~t~r~g~~y~q~f~~G~~~~~~~~~~~---~~~~~~~~GT~V~F~PD~--~iF~~~~~~d~~~i~~rl~elA 272 (622)
+++|.++.++..|..+...+..- .+..... ..+....+||+|...... .-| ++..+|.+.++.++
T Consensus 191 kV~V~Sk~dd~~~~WeS~g~gsf-ti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~-----le~~~ik~likkys 260 (272)
T 3ied_A 191 RVEVYTKKEDQIYRWSSDLKGSF-SVNEIKKYDQEYDDIKGSGTKIILHLKEECDEY-----LEDYKLKELIKKYS 260 (272)
T ss_dssp EEEEEEESSSCEEEEEECSSSEE-EEEECTTCTTCC--CCSSEEEEEEEECGGGGGG-----GSHHHHHHHHHHHC
T ss_pred EEEEEEcCCCceEEEEECCCCCE-EEEECcccccccCCCCCCCcEEEEEECCChHHh-----cCHHHHHHHHHHHH
Confidence 99999996667777766543321 1111100 012245799999987333 333 34556777777665
No 41
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.97 E-value=2.4e-05 Score=71.05 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHhhHHhhhcCC-CCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGY-ASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~-~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
.-+..++.|+|+||+.++..+. ...|.|.+.. ++ .|+|+|||.||| + ++.+|.....+..
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~-~---------~~~~~~~~~~~~~------ 101 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D---------IEEARQPLFTTKP------ 101 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C---------HHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC-h---------HHHhhcccccCCC------
Confidence 4578899999999999865421 3678888774 33 699999999999 3 2334443221110
Q ss_pred ceeeecCcccccchhhhhccCceEEEEEeC-CEEEEEEE
Q 007003 181 GYSVSGGLHGVGLSVVNALSESLEVTVWRD-GMEYHQKY 218 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~~V~t~r~-g~~y~q~f 218 (622)
..+-+|+|+.++..+.+.+.++...+ |..+.+.+
T Consensus 102 ----~~~~~GlGL~iv~~~~~~i~~~~~~~~Gt~v~~~l 136 (145)
T 1th8_A 102 ----ELERSGMGFTIMENFMDEVIVESEVNKGTTVYLKK 136 (145)
T ss_dssp ------CCCSCHHHHHHHHSSEEEEEEETTTEEEEEEEE
T ss_pred ----CCCCCcchHHHHHHHHheEEEEeCCCCCEEEEEEE
Confidence 12347999999999988555554432 33444443
No 42
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.81 E-value=4.4e-05 Score=69.02 Aligned_cols=77 Identities=19% Similarity=0.360 Sum_probs=53.8
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~ 179 (622)
+..-|..++.++|+||+.++.. ...|.|.+..++ .++|.|||.|||.+..+ .+|..... .
T Consensus 44 d~~~l~~il~nll~NAi~~~~~--~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~--------~~f~~~~~------~- 106 (152)
T 3a0y_A 44 DRTRIKQVLINLVQNAIEATGE--NGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFT------T- 106 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCT--TCEEEEEEEECSSEEEEEEEEESCCCCGGGTT--------GGGSTTCC------C-
T ss_pred CHHHHHHHHHHHHHHHHHhcCC--CCEEEEEEEecCCEEEEEEEeCCCCcCHHHHH--------hHhhhhcc------C-
Confidence 3467899999999999998633 467888887543 69999999999987532 24433211 1
Q ss_pred CceeeecCcccccchhhhhccC
Q 007003 180 SGYSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 180 ~~y~~sgG~~GvGls~vNalS~ 201 (622)
..+-+|+|++.+..+.+
T Consensus 107 -----~~~g~GlGL~i~~~~~~ 123 (152)
T 3a0y_A 107 -----KTQGTGLGLSICRKIIE 123 (152)
T ss_dssp -----C--CCCCSHHHHHHHHH
T ss_pred -----CCCCCCcCHHHHHHHHH
Confidence 12337999999987764
No 43
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.70 E-value=2.8e-05 Score=74.67 Aligned_cols=79 Identities=30% Similarity=0.340 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCCeEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCceee
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 184 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y~~ 184 (622)
.-|..++.++|+||+.+... ...|.|.+..++ |+|+|||.|||.+..+ .+|.....+.+ .
T Consensus 116 ~~l~~il~nLl~NAi~~~~~--~~~i~i~~~~~~-i~V~D~G~Gi~~~~~~--------~if~~f~~~~~---------~ 175 (222)
T 3jz3_A 116 LLLSLLVRNLLDNAVRYSPQ--GSVVDVTLNADN-FIVRDNGPGVTPEALA--------RIGERFYRPPG---------Q 175 (222)
T ss_dssp HHHHHHHHHHHHHHHHTCCT--TCEEEEEECSSE-EEEECSCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCC--CCeEEEEEccCe-EEEEECCCCCCHHHHH--------HHHhhhccCCC---------C
Confidence 45888999999999998533 356888887665 9999999999987532 34543322111 1
Q ss_pred ecCcccccchhhhhccCce
Q 007003 185 SGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 185 sgG~~GvGls~vNalS~~~ 203 (622)
..+-.|+|++++..+.+.+
T Consensus 176 ~~~g~GlGL~i~~~i~~~~ 194 (222)
T 3jz3_A 176 TATGSGLGLSIVQRIAKLH 194 (222)
T ss_dssp ------CTHHHHHHHHHHT
T ss_pred CCCcccccHHHHHHHHHHc
Confidence 1223799999999886543
No 44
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.70 E-value=0.00012 Score=66.23 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=55.2
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~ 179 (622)
+..-|..++.++|+||+.+.. ..|.|.+..++ .|+|.|||.|||.+..+ .+|.....+.
T Consensus 41 d~~~l~~il~nLl~NAi~~~~----~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~--------~~f~~~~~~~------ 102 (152)
T 1id0_A 41 EQNDFVEVMGNVLDNACKYCL----EFVEISARQTDEHLYIVVEDDGPGIPLSKRE--------VIFDRGQRVD------ 102 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHCS----SEEEEEEEECSSCEEEEEEESSSCCCGGGTT--------GGGSCCCCTT------
T ss_pred CHHHHHHHHHHHHHHHHHhCc----CeEEEEEEecCCEEEEEEEeCCCCcCHHHHH--------HHhccceecc------
Confidence 456789999999999999842 27888877533 69999999999987532 3444322111
Q ss_pred CceeeecCcccccchhhhhccCce
Q 007003 180 SGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 180 ~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
...+-+|+|++.+..+.+.+
T Consensus 103 ----~~~~g~GlGL~i~~~~~~~~ 122 (152)
T 1id0_A 103 ----TLRPGQGVGLAVAREITEQY 122 (152)
T ss_dssp ----CCCTTCCSCHHHHHHHHHHT
T ss_pred ----CCCCCcccCHHHHHHHHHHc
Confidence 11234899999999886544
No 45
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.69 E-value=6.8e-05 Score=66.74 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=36.8
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~ 153 (622)
.-|..++.|+|+||+.++ .++.|.|.+..+ + .++|.|||.|||.+.
T Consensus 39 ~~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 87 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 87 (128)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCSCSS
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEEEEEEEEeCCEEEEEEEECCcCcCccc
Confidence 456778999999999884 357888888743 3 699999999999864
No 46
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.67 E-value=8.1e-05 Score=69.68 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=54.6
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEE--eCC-C--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVAL--LAD-N--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGG 177 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i--~~d-g--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~ 177 (622)
+..-|..++.++|+||++++..+ ..|.|.+ ..+ + .|+|.|||.|||.+..+ .+|.....+..
T Consensus 40 d~~~l~~il~nLl~NAi~~~~~~--~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~--------~lf~~~~~~~~--- 106 (177)
T 3sl2_A 40 DQDKITQVLDNIISNALKYSPEG--GHVTFSIDVNEEEELLYISVKDEGIGIPKKDVE--------KVFDRFYRVDK--- 106 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTT--CCEEEEEEEETTTTEEEEEEECCSSCCCTTTTT--------TTTSTTCCCC----
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEEccCCCEEEEEEEECCCCCCHHHHH--------HHHhhhccCCC---
Confidence 34568999999999999986443 4455555 543 3 58999999999987532 24444332211
Q ss_pred CCCceeeecCcccccchhhhhccCce
Q 007003 178 SSSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 178 ~~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
......+-+|+|++++..+.+.+
T Consensus 107 ---~~~~~~~g~GlGL~iv~~~~~~~ 129 (177)
T 3sl2_A 107 ---ARTRKLGGTGLGLAIAKEMVQAH 129 (177)
T ss_dssp --------CCCCCCHHHHHHHHHHHT
T ss_pred ---CCCCCCCCCCcCHHHHHHHHHHc
Confidence 11122345899999998876544
No 47
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.66 E-value=0.00013 Score=66.20 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=53.0
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~ 179 (622)
+..-|..++.++|+||+.+.. ...|.|.+.. ++ .|+|.|||.|||.+. .+.+|.....+..
T Consensus 43 d~~~l~~il~nLl~NA~~~~~---~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~--------~~~if~~f~~~~~----- 106 (150)
T 1ysr_A 43 LPAGLRLAVDNAIANAVKHGG---ATLVQLSAVSSRAGVEIAIDDNGSGVPEGE--------RQVVFERFSRGST----- 106 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC---CSEEEEEEEEETTEEEEEEEESSSCCCGGG--------HHHHHTSCC---------
T ss_pred CHHHHHHHHHHHHHHHHhcCC---CcEEEEEEEecCCEEEEEEEECCCCCCHHH--------HHHHhcccccCCC-----
Confidence 356789999999999999842 3378888774 33 699999999999875 3456654332211
Q ss_pred CceeeecCcccccchhhhhccCce
Q 007003 180 SGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 180 ~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
...+-+|+|++++..+.+.+
T Consensus 107 ----~~~~g~GlGL~i~~~~~~~~ 126 (150)
T 1ysr_A 107 ----ASHSGSGLGLALVAQQAQLH 126 (150)
T ss_dssp -----------CCCHHHHHHHHHT
T ss_pred ----CCCCCCCcCHHHHHHHHHHc
Confidence 01233799999999887544
No 48
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.65 E-value=6.7e-05 Score=66.27 Aligned_cols=45 Identities=38% Similarity=0.561 Sum_probs=36.4
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPID 152 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~ 152 (622)
.-|..++.|+|+||+.++ ..+.|.|.+..++ .|+|.|||.|||.+
T Consensus 42 ~~l~~il~nll~NA~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 88 (129)
T 3zxo_A 42 DQAEAVVREAVSNAVRHA---AASTLTVRVKVDDDLCIEVTDNGRGMPDE 88 (129)
T ss_dssp HHHHHHHHHHHHHCCCCS---SCCEEEEEEEESSEEEEEEEECCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHhC---CCceEEEEEEEcCCEEEEEecCCCCCCcc
Confidence 467888899999999884 3578988888554 58999999999865
No 49
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.64 E-value=9.3e-05 Score=79.11 Aligned_cols=92 Identities=18% Similarity=0.398 Sum_probs=62.6
Q ss_pred CChhhHHHHHHHHhhHHhhhcCC-----CCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 175 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~-----~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf 175 (622)
..-|.+++.+||+||+.+...|. ...|.|.+..++ .|+|.|||.|||.+. ++-+|...+.+.+-
T Consensus 228 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~--------~~~if~~f~~~~~~ 299 (394)
T 2e0a_A 228 PSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRI--------IDRLFSYTYSTAPT 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGG--------HHHHTSTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHH--------HHHHhCcCccCCCC
Confidence 35689999999999999987654 347999988543 699999999999875 44577665444321
Q ss_pred CCCCCceeeecCcccccchhhhhccCce
Q 007003 176 GGSSSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 176 ~~~~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
...++......+-.|+||++|..+.+.+
T Consensus 300 ~~~~~~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2e0a_A 300 PVMDNSRNAPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp C------CCCSSCSSCHHHHHHHHHHHT
T ss_pred CCcCcCCCCCCCCcccCHHHHHHHHHHh
Confidence 0000001112234799999999987654
No 50
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.57 E-value=0.00011 Score=67.61 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=55.8
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~ 179 (622)
+..-|..++.++|+||+.+. ...|.|.+.. ++ .|+|.|||.|||.+..+ .+|.....+.+
T Consensus 44 d~~~l~~il~nll~NAik~~----~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~--------~~f~~f~~~~~----- 106 (161)
T 1bxd_A 44 HPLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRK--------HLFQPFVRGDS----- 106 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEESSCSCTTGGG--------CSSCCCCCCSC-----
T ss_pred CHHHHHHHHHHHHHHHHhhc----CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHH--------HhCCCceeCCC-----
Confidence 44568999999999999985 5678888774 33 59999999999987532 24443322211
Q ss_pred CceeeecCcccccchhhhhccCce
Q 007003 180 SGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 180 ~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
. ...+-+|+|++++..+.+.+
T Consensus 107 -~--~~~~g~GlGL~i~~~~~~~~ 127 (161)
T 1bxd_A 107 -A--RTISGTGLGLAIVQRIVDNH 127 (161)
T ss_dssp -C--CCCCCCSCCCCTTHHHHHHH
T ss_pred -C--CCCCCcccCHHHHHHHHHHc
Confidence 0 11234799999998886654
No 51
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.57 E-value=0.00012 Score=78.74 Aligned_cols=92 Identities=21% Similarity=0.370 Sum_probs=61.7
Q ss_pred CChhhHHHHHHHHhhHHhhhcCC-----CCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 175 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~-----~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf 175 (622)
..-|.+++.+||+||+.+...|. ...|.|.+..++ .|+|.|||.|||.+. ++-+|...+.+.+-
T Consensus 241 ~~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~--------~~~if~~f~~~~~~ 312 (407)
T 2q8g_A 241 PSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRK--------IDRLFNYMYSTAPR 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHH--------HGGGGCTTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHH--------HHHHhCccccCCCC
Confidence 34689999999999999987653 347988887543 699999999999875 34566655444321
Q ss_pred CCCCCceeeecCcccccchhhhhccCce
Q 007003 176 GGSSSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 176 ~~~~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
...++......+-.|+||++|..+.+.+
T Consensus 313 ~~~~~~~~~~~~G~GLGL~Ivr~i~~~~ 340 (407)
T 2q8g_A 313 PRVETSRAVPLAGFGYGLPISRLYAQYF 340 (407)
T ss_dssp CCSSCCSCCCSSCTTCHHHHHHHHHHHT
T ss_pred CCccccCCCCCCCcCCCHHHHHHHHHHh
Confidence 0000000112234799999999887654
No 52
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.48 E-value=0.00013 Score=64.09 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=35.5
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC--eEEEEECCCCccCC
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLADN--SVSVADNGRGIPID 152 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg--~IsV~DnGrGIP~~ 152 (622)
.-|..++.|+++||+.++ ..+.|.|.+..++ .++|+|||.|||.+
T Consensus 38 ~~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~i~v~D~G~gi~~~ 84 (124)
T 3zxq_A 38 NHAEAVLREAVSNAVRHA---NATSLAINVSVEDDVRVEVVDDGVGISGD 84 (124)
T ss_dssp HHHHHHHHHHHHHHHTCT---TCCEEEEEEEEEEEEEEEEEECCCSSCGG
T ss_pred HHHHHHHHHHHHHHHHhC---CCCEEEEEEEeCCCEEEEEEECCCCCCcc
Confidence 457788899999998874 3568888887433 68999999999975
No 53
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.48 E-value=0.00022 Score=75.87 Aligned_cols=92 Identities=24% Similarity=0.337 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCC------CeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYA------SNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 174 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~------~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~k 174 (622)
+.-|.+++.++|+||+.+...|.. ..|.|.+..++ .|+|.|||.|||.+..+ .+|....++.+
T Consensus 236 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~--------~iF~~f~~~~~ 307 (388)
T 1gkz_A 236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLD--------RVMDYHFTTAE 307 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTT--------TTTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHH--------HhcCcccccCC
Confidence 456899999999999999877632 27999988543 59999999999987643 35554433322
Q ss_pred -----------CCCC---CCceeeecCcccccchhhhhccCce
Q 007003 175 -----------FGGS---SSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 175 -----------f~~~---~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
|+.- ........+-.|+||++|..+.+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~ 350 (388)
T 1gkz_A 308 ASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYL 350 (388)
T ss_dssp ------------------------CCSCSSCHHHHHHHHHHHT
T ss_pred CcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHh
Confidence 1100 0000111233799999999998765
No 54
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.48 E-value=0.00016 Score=77.21 Aligned_cols=91 Identities=19% Similarity=0.352 Sum_probs=59.6
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCC-----CeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYA-----SNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKF 175 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~-----~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf 175 (622)
..-|.+++.+||+||+.+...|.. ..|.|.+..++ .|+|.|||.|||.+. ++-+|...+.+..-
T Consensus 229 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~--------~~~iF~~f~~~~~~ 300 (394)
T 2btz_A 229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRK--------IERLFSYMYSTAPT 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHH--------HHHHTCTTTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHH--------HHHHhcccccCCCC
Confidence 356899999999999999877642 46988887543 699999999999874 44567655443321
Q ss_pred CCCCCceeeecCcccccchhhhhccCce
Q 007003 176 GGSSSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 176 ~~~~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
...+ ......+-.|+||++|..+.+.+
T Consensus 301 ~~~~-~~~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2btz_A 301 PQPG-TGGTPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp --------------CCHHHHHHHHHHHT
T ss_pred CCcc-cCCCCCCCccCCHHHHHHHHHHh
Confidence 0000 01111233799999999987655
No 55
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.46 E-value=0.00012 Score=66.68 Aligned_cols=80 Identities=26% Similarity=0.459 Sum_probs=47.3
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C------------eEEEEECCCCccCCCcCCCCcchHHHhhhhc
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N------------SVSVADNGRGIPIDLHPATNKSALETVLTVL 169 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g------------~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~l 169 (622)
+..-|..++.++|+||+.+...+ ...|.|.+..+ + .|+|.|||.|||.+..+ .+|...
T Consensus 45 d~~~l~~il~nLl~NAik~~~~~-~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~--------~lf~~~ 115 (160)
T 1r62_A 45 DPDQIEQVLLNIVRNALQALGPE-GGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQD--------TLFYPM 115 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGG-CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------------
T ss_pred CHHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHH--------HhhCcc
Confidence 44568999999999999987542 46787777632 1 48999999999987532 244332
Q ss_pred cCCCCCCCCCCceeeecCcccccchhhhhccCce
Q 007003 170 HAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 170 hag~kf~~~~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
..+ ..+-+|+|++++..+.+.+
T Consensus 116 ~~~------------~~~g~GlGL~i~~~~~~~~ 137 (160)
T 1r62_A 116 VSG------------REGGTGLGLSIARNLIDQH 137 (160)
T ss_dssp --------------------CHHHHHHHHHHHHT
T ss_pred ccC------------CCCCCccCHHHHHHHHHHC
Confidence 111 1123799999999887644
No 56
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.46 E-value=0.00011 Score=79.28 Aligned_cols=92 Identities=15% Similarity=0.334 Sum_probs=59.3
Q ss_pred CChhhHHHHHHHHhhHHhhhcCC------CCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGY------ASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGK 174 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~------~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~k 174 (622)
+.-|.+++.+||+||+.+...|. ...|.|.+..++ .|+|.|||.|||.+. ++-+|.....+.+
T Consensus 251 ~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~--------l~~iF~~f~~~~~ 322 (419)
T 1y8o_A 251 PSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRK--------IDRLFNYMYSTAP 322 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHH--------HGGGGCTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHH--------HHHHhCcccccCC
Confidence 35689999999999999987653 347999887543 699999999999875 3456665444322
Q ss_pred CCCCCCceeeecCcccccchhhhhccCce
Q 007003 175 FGGSSSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 175 f~~~~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
-...++......+-.|+||++|..+.+.+
T Consensus 323 ~~~~~~~~~~~~~G~GLGL~I~k~iv~~~ 351 (419)
T 1y8o_A 323 RPSLEPTRAAPLAGFGYGLPISRLYARYF 351 (419)
T ss_dssp ----------CC--CTTHHHHHHHHHHHT
T ss_pred CCCccccCCCCcCCeecCHHHHHHHHHHh
Confidence 10000001112233799999999887654
No 57
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.42 E-value=0.00023 Score=70.66 Aligned_cols=78 Identities=24% Similarity=0.470 Sum_probs=54.5
Q ss_pred CChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCCC---eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN---SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 104 ~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~dg---~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
..-|..++.++|+||+++...+ ..|.|.+..++ .|+|.|||.|||.+.. +.+|.... .
T Consensus 153 ~~~l~~il~nLl~NA~~~~~~~--~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~--------~~if~~~~------~--- 213 (268)
T 4ew8_A 153 GKRLAQTLDHLVENALRQTPPG--GRVTLSARRALGEVRLDVSDTGRGVPFHVQ--------AHIFDRFV------G--- 213 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEECSSEEEEEEEESSCCCCHHHH--------TTTTSTTC------C---
T ss_pred HHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEecCCEEEEEEEcCCCCCCHHHH--------HHHHHHHh------c---
Confidence 3458899999999999986443 67888887543 6999999999998642 22343221 1
Q ss_pred ceeeecCcccccchhhhhccCce
Q 007003 181 GYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~ 203 (622)
...+-.|+|++++..+.+.+
T Consensus 214 ---~~~~g~GlGL~i~~~~~~~~ 233 (268)
T 4ew8_A 214 ---RDRGGPGLGLALVKALVELH 233 (268)
T ss_dssp ---CSSCCCTTHHHHHHHHHHHT
T ss_pred ---CCCCCCcccHHHHHHHHHHc
Confidence 11234799999998876544
No 58
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.41 E-value=0.00026 Score=70.14 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=56.3
Q ss_pred CCChhhHHHHHHHHhhHHhhhcC-CCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAG-YASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGS 178 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g-~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~ 178 (622)
+..-|..++..+|+||+++...+ ....|.|.+.. ++ .|+|.|||.|||.+..+ -+|...+.+..-
T Consensus 135 d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~--------~if~~f~~~~~~--- 203 (258)
T 2c2a_A 135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKD--------RIFEQFYRVDSS--- 203 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTT--------GGGSTTCCCC-----
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHH--------hhccccccCCCC---
Confidence 45678999999999999986543 23568887764 33 58999999999987532 356543322110
Q ss_pred CCceeeecCcccccchhhhhccCce
Q 007003 179 SSGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 179 ~~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
.-....| .|+|+++|..+.+.+
T Consensus 204 --~~~~~~G-~GLGL~i~~~iv~~~ 225 (258)
T 2c2a_A 204 --LTYEVPG-TGLGLAITKEIVELH 225 (258)
T ss_dssp ----------CCCTHHHHHHHHHHT
T ss_pred --CCCCCCC-cchHHHHHHHHHHHc
Confidence 0011223 799999998886543
No 59
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.38 E-value=0.0002 Score=68.91 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeCC-C--eEEEEECCCCccCCC
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~ 153 (622)
.|..++.|+|+||+.++ .++.|.|.+..+ + .|+|.|||.|||.+.
T Consensus 130 ~l~~il~nll~Na~k~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~ 177 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHS---QAKTCRVDIQQLWKEVVITVSDDGTFKGEEN 177 (218)
T ss_dssp HHHHHHHHHHHHHHHHT---CCSEEEEEEEEETTEEEEEEEESSCCCC---
T ss_pred HHHHHHHHHHHHHHHhC---CCCEEEEEEEEeCCEEEEEEEECCcCCCCCC
Confidence 46678899999999884 356888888743 3 699999999999864
No 60
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.21 E-value=0.00039 Score=67.57 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=54.3
Q ss_pred CCChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCC
Q 007003 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSS 179 (622)
Q Consensus 103 ~~~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~ 179 (622)
+..-|..++.++|+||+.+... ...|.|.+.. ++ .|+|.|||.|||.+. .+.+|.....+.
T Consensus 120 d~~~l~~il~nLl~NA~~~~~~--~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~--------~~~if~~~~~~~------ 183 (244)
T 3d36_A 120 EREKFRQCLLNVMKNAIEAMPN--GGTLQVYVSIDNGRVLIRIADTGVGMTKEQ--------LERLGEPYFTTK------ 183 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHTCTT--CEEEEEEEEEETTEEEEEEEECSSCCCHHH--------HHHTTSTTCCSS------
T ss_pred CHHHHHHHHHHHHHHHHHhccC--CCeEEEEEEEeCCEEEEEEEecCCCCCHHH--------HHHHhcccccCC------
Confidence 3456889999999999998532 4678877774 33 699999999999764 233444322111
Q ss_pred CceeeecCcccccchhhhhccCce
Q 007003 180 SGYSVSGGLHGVGLSVVNALSESL 203 (622)
Q Consensus 180 ~~y~~sgG~~GvGls~vNalS~~~ 203 (622)
..+-+|+|++.+..+.+.+
T Consensus 184 -----~~~g~GlGL~i~~~i~~~~ 202 (244)
T 3d36_A 184 -----GVKGTGLGMMVVYRIIESM 202 (244)
T ss_dssp -----GGGCCSCHHHHHHHHHHHT
T ss_pred -----CCCCcchhHHHHHHHHHHc
Confidence 0123799999988886544
No 61
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.20 E-value=0.00029 Score=72.36 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCc
Q 007003 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG 181 (622)
Q Consensus 105 ~gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~ 181 (622)
.-|..++.++|+||+++.. ....|.|.+.. ++ .|+|.|||.|||.+..+ .+|....+ .
T Consensus 243 ~~l~~vl~nLl~NA~k~~~--~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~--------~if~~f~~------~--- 303 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATG--ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKE--------KIFSPFFT------T--- 303 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTC--TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGT--------TTSSSCCC------C---
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCEEEEEEEecCCEEEEEEEECCCCCChHHHh--------hcCCCCcc------C---
Confidence 4588999999999999852 24678888774 33 68999999999987532 24433211 1
Q ss_pred eeeecCcccccchhhhhccC
Q 007003 182 YSVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 182 y~~sgG~~GvGls~vNalS~ 201 (622)
..+-+|+|++++.-+.+
T Consensus 304 ---~~~g~GlGL~i~~~~v~ 320 (349)
T 3a0r_A 304 ---KTQGTGLGLSICRKIIE 320 (349)
T ss_dssp ---------CCCTHHHHHHH
T ss_pred ---CCCCccchHHHHHHHHH
Confidence 11237999999887653
No 62
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.13 E-value=0.0005 Score=73.26 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhhHHhhhc--------C--CCCeEEEEEeC-CC--eEEEEECCCCccCCC
Q 007003 106 GLHHLVYEILDNAVDEAQA--------G--YASNIEVALLA-DN--SVSVADNGRGIPIDL 153 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~--------g--~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~ 153 (622)
-+..++.++|.||+|+... | ....|.|.+.. ++ .|+|.|||+|||.+.
T Consensus 106 ~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~ 166 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 166 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHH
Confidence 3445599999999999632 1 35678888775 33 599999999999874
No 63
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.12 E-value=0.00045 Score=65.28 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHhhHHhhhc----------CCCCeEEEEEeCC-C--eEEEEECCCCccCCC
Q 007003 106 GLHHLVYEILDNAVDEAQA----------GYASNIEVALLAD-N--SVSVADNGRGIPIDL 153 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~----------g~~~~I~V~i~~d-g--~IsV~DnGrGIP~~~ 153 (622)
-+..++.++|+||+.++.. .....|.|.+..+ + .|+|.|||.|||.+.
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~ 107 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEK 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHH
Confidence 4555699999999999632 2356788888753 3 699999999999864
No 64
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=96.65 E-value=0.0039 Score=66.80 Aligned_cols=84 Identities=25% Similarity=0.264 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHhhHHhhhcC-CCCeEEEEEeC--CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCC
Q 007003 106 GLHHLVYEILDNAVDEAQAG-YASNIEVALLA--DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSS 180 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g-~~~~I~V~i~~--dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~ 180 (622)
.+.-++.|++.||+.++... ....|.|.+.. ++ .|+|+|+|+|+|.. + +
T Consensus 297 ~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~--~---------------------~--- 350 (399)
T 3ke6_A 297 DIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR--D---------------------G--- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC--------------------------------
T ss_pred HHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC--C---------------------C---
Confidence 35678999999999996432 24678888763 44 69999999999864 0 0
Q ss_pred ceeeecCcccccchhhhhccCceEEEEEeCCEEEEEEEeC
Q 007003 181 GYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSR 220 (622)
Q Consensus 181 ~y~~sgG~~GvGls~vNalS~~~~V~t~r~g~~y~q~f~~ 220 (622)
.+-+|.|+.+|..|+..+.+....+|+...++|.-
T Consensus 351 -----~~~~G~GL~lv~~l~~~~~~~~~~~G~~v~~~~~~ 385 (399)
T 3ke6_A 351 -----ARGRGRGLAMAEALVSEARIMHGAGGTTATLTHRL 385 (399)
T ss_dssp -----------CHHHHHTTSSEEEEEEETTEEEEEEEEEC
T ss_pred -----CCCCCcHHHHHHHHHHheeeEECCCcEEEEEEEEc
Confidence 12358899999999998887665566666666653
No 65
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=96.37 E-value=0.0026 Score=63.26 Aligned_cols=76 Identities=22% Similarity=0.156 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHhhHHhhhcCCCCeEEEEEeC-CC--eEEEEECCCCccCCCcCCCCcchHHHhhhhccCCCCCCCCCCce
Q 007003 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA-DN--SVSVADNGRGIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGY 182 (622)
Q Consensus 106 gL~~lv~EildNaiDe~~~g~~~~I~V~i~~-dg--~IsV~DnGrGIP~~~h~~~g~~~~e~v~t~lhag~kf~~~~~~y 182 (622)
-+.+++.-++.||+++...| ..|.|.+.. ++ .|+|.|+|.||+++.+ ..+-+|.. |...
T Consensus 146 ~~~qvl~NLl~NA~~a~~~g--g~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~------~~~~~f~~------~~~~---- 207 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAG--GVATVKGVAADGRFSIIADAKGPRARLRPE------VLAGLKGE------PLAE---- 207 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTC--CEEEEEEEEETTEEEEEEEEESTTCCCCHH------HHHHHTTC------CCCS----
T ss_pred HHHHHHHHHHHHHHHhcCCC--CeEEEEEEEECCEEEEEEEEcCCCCCCCHH------HHHHhcCC------CCCC----
Confidence 46778888888888875444 578888774 34 6899999999987632 22333321 2111
Q ss_pred eeecCcccccchhhhhccC
Q 007003 183 SVSGGLHGVGLSVVNALSE 201 (622)
Q Consensus 183 ~~sgG~~GvGls~vNalS~ 201 (622)
+ ..| +|+|+++|-.+.+
T Consensus 208 ~-~~G-~GLGLai~~~iv~ 224 (247)
T 4fpp_A 208 G-LGG-PWVQAAYLNALVR 224 (247)
T ss_dssp S-CHH-HHHHHHHHHHHHH
T ss_pred C-CCC-ccHHHHHHHHHHH
Confidence 1 123 6999998877753
No 66
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=84.28 E-value=5.1 Score=44.38 Aligned_cols=100 Identities=14% Similarity=0.250 Sum_probs=64.4
Q ss_pred eEEEEEEEecCCCC---CceeeeeeCceecc-CCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHhcccEEEEE
Q 007003 330 ITIDLALQWCSDAY---SDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 405 (622)
Q Consensus 330 ~~veval~~s~~~~---~~~~~SFVN~I~T~-~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~diregL~~vvs 405 (622)
..||+|+.|--+.- .-.++-|+|-|+.. +.|. .++++++... .+.+.. .++ =...+.++|+
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~~------~~~~~~~~~~-~w~~y~----~~~----~~~~~~~~v~ 414 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKS------DVIWKVVEEL-DWKRYG----IES----DQYQMVVMVH 414 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGGG------CHHHHHHHHS-CTTSSS----CCC----SSBCEEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCCc------chhhhhhccC-ChhhcC----cCC----CCCCEEEEEE
Confidence 56899999963211 23799999999986 4552 4566666442 222211 111 0136789999
Q ss_pred EeecCCCCCCcccccccC-cccccchhhhhh---HHHHHHHhh
Q 007003 406 VRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLEL 444 (622)
Q Consensus 406 v~i~nP~FegQTK~kL~n-~ev~~~v~~~v~---~~l~~~l~~ 444 (622)
+--++-.|.|-.|+.+++ +|+...+...+. .+|..|+.+
T Consensus 415 i~st~vp~~~~~Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~ 457 (530)
T 2zbk_B 415 LCSTKIPYKSAGKESIAEVENIEKEIKNALMEVARKLKQYLSE 457 (530)
T ss_dssp EEESSCCBSSSSCSCBCCCHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred eccCCCCcCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 565555554443 355556543
No 67
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=82.43 E-value=1.3 Score=42.50 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=23.1
Q ss_pred CCCeEEEEEeCC--C---eEEEEECCCCccCCC
Q 007003 126 YASNIEVALLAD--N---SVSVADNGRGIPIDL 153 (622)
Q Consensus 126 ~~~~I~V~i~~d--g---~IsV~DnGrGIP~~~ 153 (622)
....|.|.+..+ + .|.|.|+|++||.+.
T Consensus 129 ~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~ 161 (192)
T 1ixm_A 129 SENHLTVSLQTDHPDRQLILYLDFHGAFADPSA 161 (192)
T ss_dssp SCCEEEEEEECCCSSSSCEEEEEEESCBSCGGG
T ss_pred CCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHH
Confidence 467899988865 3 699999999999875
No 68
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=57.08 E-value=27 Score=39.38 Aligned_cols=93 Identities=14% Similarity=0.309 Sum_probs=57.3
Q ss_pred eEEEEEEEecCCC---CCceeeeeeCcee-ccCCccchHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHhHh-cccEEEE
Q 007003 330 ITIDLALQWCSDA---YSDTMLGYANSIR-TIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR-EGLTCII 404 (622)
Q Consensus 330 ~~veval~~s~~~---~~~~~~SFVN~I~-T~~GGTHv~g~~~al~~~ln~~~kk~~~~k~~~~~l~~~dir-egL~~vv 404 (622)
..||+|+.|--+. -.-.++=|+|-|| ..+.|. .++++++... .+.+.. .+-.+..+- .-+.+||
T Consensus 353 fivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~-~w~~y~----~~~~~~~~p~~~~~~~v 421 (621)
T 2q2e_B 353 FVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDI-KWKQYG----LNQPGGGIPVGPVILLI 421 (621)
T ss_dssp EEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHS-CCTTTT----CCCCSSSSCCSSCCEEE
T ss_pred eEEEEeeecCCCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhC-ChhhcC----cCCCCCCCCCCCEEEEE
Confidence 5689999996221 1247899999998 455555 3556766543 222211 000000111 2468999
Q ss_pred EEeecCCCCCCcccccccC-cccccchhhh
Q 007003 405 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQS 433 (622)
Q Consensus 405 sv~i~nP~FegQTK~kL~n-~ev~~~v~~~ 433 (622)
++--.+-.|.|--|+..++ ||+..-|...
T Consensus 422 ~~~st~vp~~~~~ke~ia~~~ei~~ei~~a 451 (621)
T 2q2e_B 422 HVASINVPFTSESKDAIADIPVIKEEIDLA 451 (621)
T ss_dssp EEECSSCCBSSSSSSSBCCCHHHHHHHHHH
T ss_pred EEeecCCCcCCcchhhhcCCHHHHHHHHHH
Confidence 9999999999999999985 4554444433
No 69
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=35.73 E-value=8.9 Score=33.89 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.9
Q ss_pred CCCc-eEEeeCCCCCCCchHHHHHHHHH
Q 007003 570 RYHK-IIILTDADVDGAHIRTLLLTFFY 596 (622)
Q Consensus 570 RY~k-IiImTDaDvDGsHI~~Llltff~ 596 (622)
||.. |||+||.|.=|-.|+.-+...|-
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l~ 87 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELLS 87 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhcC
Confidence 4666 99999999999999998877663
No 70
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=30.26 E-value=36 Score=31.53 Aligned_cols=48 Identities=19% Similarity=0.296 Sum_probs=28.2
Q ss_pred eeeccCCCChhhHHHHHHHHhhHHhhhc---C-CCCeEEEEEeCCCeEEEEECCC
Q 007003 97 MYIGSTGPRGLHHLVYEILDNAVDEAQA---G-YASNIEVALLADNSVSVADNGR 147 (622)
Q Consensus 97 mYiGs~~~~gL~~lv~EildNaiDe~~~---g-~~~~I~V~i~~dg~IsV~DnGr 147 (622)
+|+||++...|.- .|+|..|+...+. + ..+.|...+..+ .|++.||-|
T Consensus 19 ~yLgSvevesltG--~~av~kAv~~~l~~~~~~~~t~V~fkVS~q-GItLtD~~r 70 (157)
T 3hqc_A 19 LYLTSVETESLTG--PQAVARASSAALSCSPRPTPAVVHFKVSAQ-GITLTDNQR 70 (157)
T ss_dssp EEEEEEECTTCCH--HHHHHHHHHHHHHCC---CCEEEEEEEETT-EEEEEEEET
T ss_pred EEeceEecCCCCC--hHHHHHHHHHHHhcCCCCCCeEEEEEEeCC-CceEEeccc
Confidence 7999997654321 1334444443332 1 245566667766 499999976
No 71
>1wvh_A Tensin, tensin1; beta sandwich, cell adhesion; 1.50A {Gallus gallus} SCOP: b.55.1.2 PDB: 2gjy_A
Probab=25.50 E-value=58 Score=29.27 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=28.5
Q ss_pred eeeccCCCChhhHHHHHHHHhhHHhhhc---C-CCCeEEEEEeCCCeEEEEECCCCc
Q 007003 97 MYIGSTGPRGLHHLVYEILDNAVDEAQA---G-YASNIEVALLADNSVSVADNGRGI 149 (622)
Q Consensus 97 mYiGs~~~~gL~~lv~EildNaiDe~~~---g-~~~~I~V~i~~dg~IsV~DnGrGI 149 (622)
+|+||++...|.- -|+|--|+...++ . ..+.+...+..+ .|++.||.|-.
T Consensus 7 ~yLgSvevesltG--~~av~~Ai~~~l~~~~~~~~t~vh~kVS~q-GItLtD~~rk~ 60 (134)
T 1wvh_A 7 LFINSVEMESLTG--PQAISKAVAETLVADPTPTATIVHFKVSAQ-GITLTDNQRKL 60 (134)
T ss_dssp EEEEEEEEETCCH--HHHHHHHHHHHHTCSSCCCCEEEEEEEETT-EEEEEESSSCS
T ss_pred EEEEEEEecCCcC--HHHHHHHHHHHHhcCCCCCCeEEEEEEEcC-CCeEEccCcce
Confidence 6999997543322 1333333333332 1 245566666655 59999997644
No 72
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=24.25 E-value=16 Score=32.36 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCCceEEeeCCCCCCCchHHHHHHHH
Q 007003 570 RYHKIIILTDADVDGAHIRTLLLTFF 595 (622)
Q Consensus 570 RY~kIiImTDaDvDGsHI~~Llltff 595 (622)
.+..|||+||.|-=|.-||..|...|
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~l 74 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMF 74 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHC
Confidence 46789999999999999998775544
No 73
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.55 E-value=75 Score=20.51 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhHHhhhcC
Q 007003 108 HHLVYEILDNAVDEAQAG 125 (622)
Q Consensus 108 ~~lv~EildNaiDe~~~g 125 (622)
.+-+.|++||+|+-+.+.
T Consensus 11 ekqieelldncietfvae 28 (31)
T 4h62_V 11 EKQIEELLDNCIETFVAE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 467899999999987764
Done!