BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007004
(622 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/540 (29%), Positives = 278/540 (51%), Gaps = 43/540 (7%)
Query: 18 FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIH 77
K E+++ +++ + K + WKVLI+D+L+++++S CKM +I EG++LVEDI+
Sbjct: 3 LKTAVHEKIMNDVVLAVK---KNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDIN 59
Query: 78 RRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDS 136
RRR+PLP +EA+Y I PT+E+V ++D +P Y+ A +FF+ EL + K S
Sbjct: 60 RRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-S 118
Query: 137 TVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVF 196
T I L+E+N+ + +SQ F D +++ + ++ G A +IAT+
Sbjct: 119 TTARFIKTLKEINIAFLPYESQIFSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLC 177
Query: 197 ASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256
A+L E+P VRYR+ D +F+ L+ KL A + ++ PQ + LL
Sbjct: 178 ATLGEYPSVRYRS----DFDENASFAQLVQQKLDAYRAD-----DPTMGEGPQKDRSQLL 228
Query: 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGP--PEKKEVLLEEHDPL 314
ILDR D ++P++HE T+ A+ DLL +E + Y + TGG PE KEVLL+E D L
Sbjct: 229 ILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKY---VNTGGNEVPE-KEVLLDEKDDL 284
Query: 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQ 374
W+E+RH HIA S+ + +K+ F + + A KDL +M++ +PQY +
Sbjct: 285 WVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKE 338
Query: 375 IDKLSLHVEIAGKINKIIXXXXXXXXXXXXXXXVFGDAG-------LKDVVKFFTTNEDV 427
+ K S H+ +A K + DA ++++V ++ +
Sbjct: 339 LSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPIL-LDQKI 397
Query: 428 SRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTG 487
S +K+R+++ L I+ E +++ A + +++ +N+M+ L G I+
Sbjct: 398 SAYDKIRIIL-LYIIHKGGISEENLAKLVQHAHIPAEEKWIINDMQNL-GVPIIQDGGRR 455
Query: 488 AFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSP 547
+ + RK+R + T+Q+SR+ P +++++E + +L YP +N P
Sbjct: 456 KIPQPYHTHN-----RKERQA-DHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGP 509
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 157/540 (29%), Positives = 278/540 (51%), Gaps = 54/540 (10%)
Query: 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDI 76
K + E++++++++ K WKVL++D+L+++++S CKM DI EG+++VEDI
Sbjct: 5 GLKAVVGEKIMHDVIKKV---KKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDI 61
Query: 77 HRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKD 135
++RR+PLPS+EA+Y I P++++V +SD + Y+ A VFF+ L + K
Sbjct: 62 NKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK- 120
Query: 136 STVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATV 195
S I L E+N+ + +SQ + D + + + + ++ + L +A +IAT+
Sbjct: 121 SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATL 179
Query: 196 FASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTET 252
A+L+E+P VRYR + + + LI KL A YK ++ P
Sbjct: 180 CATLKEYPAVRYRGEYKDNAL----LAQLIQDKLDA--------YKADDPTMGEGPDKAR 227
Query: 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHD 312
LLILDR D +P++HE T+ A+ DLL +E + Y +E + G KEVLL+E D
Sbjct: 228 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDD 285
Query: 313 PLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYS 372
LW+ LRH HIA+ S+ + + F S + G + + +DL +M++ +PQY
Sbjct: 286 DLWIALRHKHIAEVSQEVTRSLKDFSSSKR-------MNTGEKTTMRDLSQMLKKMPQYQ 338
Query: 373 DQIDKLSLHVEIA--------GKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTN 424
++ K S H+ +A G ++K+ D ++ +V +
Sbjct: 339 KELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDP-MRAIVPIL-LD 396
Query: 425 EDVSRENKLRLLMILAAIYPEKFQGEKGQN-IMKLARLQSDDITAVNNMRLLGGASDIKK 483
+VS +K+R+ IL I+ + E+ N +++ A++ +D + NM LG I
Sbjct: 397 ANVSTYDKIRI--ILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVP--IVT 452
Query: 484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMN 543
ST + ++ + RK+R EQT+QLSR+ P+I++++E + +L YP ++
Sbjct: 453 DST--------LRRRSKPERKERIS-EQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYIS 503
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 214 bits (544), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 157/540 (29%), Positives = 278/540 (51%), Gaps = 54/540 (10%)
Query: 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDI 76
K + E++++++++ K WKVL++D+L+++++S CKM DI EG+++VEDI
Sbjct: 17 GLKAVVGEKIMHDVIKKV---KKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDI 73
Query: 77 HRRRQPLPSMEAIYFIQPTKENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKD 135
++RR+PLPS+EA+Y I P++++V +SD + Y+ A VFF+ L + K
Sbjct: 74 NKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK- 132
Query: 136 STVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATV 195
S I L E+N+ + +SQ + D + + + + ++ + L +A +IAT+
Sbjct: 133 SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK-AQMKNPILERLAEQIATL 191
Query: 196 FASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQ---SIENFPQTET 252
A+L+E+P VRYR + + + LI KL A YK ++ P
Sbjct: 192 CATLKEYPAVRYRGEYKDNAL----LAQLIQDKLDA--------YKADDPTMGEGPDKAR 239
Query: 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHD 312
LLILDR D +P++HE T+ A+ DLL +E + Y +E + G KEVLL+E D
Sbjct: 240 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDD 297
Query: 313 PLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYS 372
LW+ LRH HIA+ S+ + + F S + G + + +DL +M++ +PQY
Sbjct: 298 DLWIALRHKHIAEVSQEVTRSLKDFSSSKR-------MNTGEKTTMRDLSQMLKKMPQYQ 350
Query: 373 DQIDKLSLHVEIA--------GKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTN 424
++ K S H+ +A G ++K+ D ++ +V +
Sbjct: 351 KELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDP-MRAIVPIL-LD 408
Query: 425 EDVSRENKLRLLMILAAIYPEKFQGEKGQN-IMKLARLQSDDITAVNNMRLLGGASDIKK 483
+VS +K+R+ IL I+ + E+ N +++ A++ +D + NM LG I
Sbjct: 409 ANVSTYDKIRI--ILLYIFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVP--IVT 464
Query: 484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMN 543
ST + ++ + RK+R EQT+QLSR+ P+I++++E + +L YP ++
Sbjct: 465 DST--------LRRRSKPERKERIS-EQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYIS 515
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 204 bits (520), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 144/565 (25%), Positives = 271/565 (47%), Gaps = 43/565 (7%)
Query: 26 LLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPS 85
+L LRS G WKVL++DK ++++S +M++I GV++VED+ ++R+ LP
Sbjct: 11 VLTNSLRSVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQ 67
Query: 86 MEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGAL 145
+YFI+PT+EN+ + D + R+P Y+ A +FF SP+ L+ + V + L
Sbjct: 68 FHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAV-KYVKTL 126
Query: 146 REMNLEYFAIDSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLV 205
+E+N + + + F ++ L + +G SR ++ + R++T+ ++ P+V
Sbjct: 127 KEINTLFIPKEHRVFTLNEPHGLVQYYG----SRSSSYNIDHLVRRLSTLCTTMNVAPIV 182
Query: 206 RYRAAKSLDTMTMT-TFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQ 264
RY + + T M I ++ G+ N +S LILDR+VD
Sbjct: 183 RYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKS----------QFLILDRAVDL 232
Query: 265 VAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIA 324
+P++HE TY A DLLN+E + Y + GG ++++V+L E D +WL++RH HI+
Sbjct: 233 KSPLVHELTYQAAAYDLLNIENDIYSYST-VDAGGREQQRQVVLGEDDDIWLQMRHLHIS 291
Query: 325 DASERLHEKMTSF-ISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVE 383
+ ++ F +S + ++ S + GE L++M++ LPQ+ +Q+ K SLH++
Sbjct: 292 EVFRKVKSSFDEFCVSARRLQGLRDSQQ--GEGGAGALKQMLKDLPQHREQMQKYSLHLD 349
Query: 384 IAGKINKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFF------TTNEDVSRENKLRLLM 437
++ IN + V F + VS E+KLR LM
Sbjct: 350 MSNAINMAFSSTIDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLM 409
Query: 438 ILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINK 497
L + + N++ A + + +A+ N+ +LG ++ D
Sbjct: 410 -LCVLAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGA------------TVVADRRG 456
Query: 498 KKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAA 557
+K K R + + LSR+ P++++L+E + +L + YP + + V K S +
Sbjct: 457 RKPKTMK-RIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKS 515
Query: 558 ISQPPVAHSMRSRRTPTWARPRNSD 582
+ + + +R+ WA+ + ++
Sbjct: 516 VEEDDDGPATSARKRGNWAKNKGNN 540
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 152/517 (29%), Positives = 252/517 (48%), Gaps = 40/517 (7%)
Query: 41 STWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVI 100
+ WKVLI+D+L+ + +S CK +I EG++LVEDI+RRR+PLP +EA+Y I PT+E+V
Sbjct: 23 AEWKVLIVDQLSXRXVSACCKXHEIXSEGITLVEDINRRREPLPLLEAVYLITPTEESVK 82
Query: 101 MFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQG 159
+D +P Y+ A +FF+ EL + K ST I L+E+N+ + +SQ
Sbjct: 83 CLXADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYESQI 141
Query: 160 FVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMT 219
F D +++ + ++ G A +IAT+ A+L E+P VRYR+ D
Sbjct: 142 FSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRS----DFDENA 196
Query: 220 TFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICR 279
+F+ L+ KL A + PQ + LLILDR D ++P++HE T+ A
Sbjct: 197 SFAQLVQQKLDA-----YRADDPTXGEGPQKDRSQLLILDRGFDPISPLLHELTFQAXAY 251
Query: 280 DLLNMEGNKYVHEVPSKTGGP--PEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSF 337
DLL +E + Y + TGG PE KEVLL+E D LW+E RH HIA S+ + +K+ F
Sbjct: 252 DLLPIENDVYKY---VNTGGNEVPE-KEVLLDEKDDLWVEXRHQHIAVVSQNVTKKLKQF 307
Query: 338 ISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIXXXXX 397
+ + A KDL + ++ PQY ++ K S H+ +A K
Sbjct: 308 ADEKRXGTAADKA------GIKDLSQXLKKXPQYQKELSKYSTHLHLAEDCXKQYQQHVD 361
Query: 398 XXXXXXXXXXVFGDAG-------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGE 450
DA +++V ++ +S +K+R+++ L I+ E
Sbjct: 362 KLCKVEQDLAXGTDADGEKIRDHXRNIVPIL-LDQKISAYDKIRIIL-LYIIHKGGISEE 419
Query: 451 KGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRTGEE 510
+++ A + +++ +N+ + L G I+ + + RK+R +
Sbjct: 420 NLAKLVQHAHIPAEEKWIINDXQNL-GVPIIQDGGRRKIPQPYHTHN-----RKERQA-D 472
Query: 511 QTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSP 547
T+Q SR+ P +++ E + +L YP +N P
Sbjct: 473 HTYQXSRWTPYXKDIXEAAVEDKLDTRHYPFLNGGGP 509
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 152/533 (28%), Positives = 258/533 (48%), Gaps = 68/533 (12%)
Query: 43 WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMF 102
WK++++D+ T K++S CKM D+ +EG++++E+I++ R+P+ M+A+YFI PT ++V F
Sbjct: 32 WKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCF 91
Query: 103 LSDMSGRS-PLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFV 161
L D +S YK A+++F+ L IK ++ I +E+N+ + +SQ +
Sbjct: 92 LRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIK--ASCSKSIRRCKEINISFIPQESQVYT 149
Query: 162 TDDERALEELFG-DEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTT 220
D A + D N+ R + + MA +I TV A+L E P VRY+ +K LD
Sbjct: 150 LDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYK-SKPLDNA---- 204
Query: 221 FSDLIPTKLAAGVWNCLMKY-----KQSIENFPQTETCDLLILDRSVDQVAPIIHEWTYD 275
+KLA V L Y K I+ Q++ LLI+DR D V+ ++HE T+
Sbjct: 205 ------SKLAQLVEKKLEDYYKIDEKGLIKGKTQSQ---LLIIDRGFDPVSTVLHELTFQ 255
Query: 276 AICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMT 335
A+ DLL +E + Y + KT G ++KE +LEE D LW+ +RH HIA E + + M
Sbjct: 256 AMAYDLLPIENDTYKY----KTDG--KEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMK 309
Query: 336 SFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAG--------K 387
S KA + G+ S L ++++ +P + QI K +H+ +A
Sbjct: 310 EISSTKKATE--------GKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKLN 361
Query: 388 INKIIXXXXXXXXXXXXXXXVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKF 447
I K+ D+ L + N D + + LL I
Sbjct: 362 IEKLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFG------I 415
Query: 448 QGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAVRKDRT 507
G +N+ +L ++N+++ + I+ S + +++ + +RKDR+
Sbjct: 416 NGTTEENLDRL----------IHNVKIEDDSDMIRNWSHLGVPI-VPPSQQAKPLRKDRS 464
Query: 508 GEEQTWQLSRFYPMIEELIEKLGKRELPKDDYP-CMNEPSPTVHAKNQSAAIS 559
EE T+QLSR+ P I++++E L ++P C P+ N S A+S
Sbjct: 465 AEE-TFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPA----VWNGSGAVS 512
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/373 (24%), Positives = 170/373 (45%), Gaps = 53/373 (14%)
Query: 43 WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMF 102
WKVLI+D + +S ++ D+ + G+++ I + R PLP + AIYF+ PTKEN+ +
Sbjct: 58 WKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDII 117
Query: 103 LSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEY---------- 152
++D+ +S Y + ++ F+S + R L+ + + ++ + ++++ +Y
Sbjct: 118 VNDL--KSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPEL 175
Query: 153 FAID-SQGFVT--DDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRA 209
F+++ S ++T D + EE+ G C N+ TV ++ P++ RA
Sbjct: 176 FSLEISNAYLTLNDPKTTEEEITG---------LCANIADGLFNTVL-TINSIPII--RA 223
Query: 210 AKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLLILDRSVDQVAPII 269
AK ++ + TKL V N +++ E L+ILDR++D +
Sbjct: 224 AKG---GPAEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASXFS 280
Query: 270 HEWTYDAICRDLLNMEGNKYVHEVPSKTGG-------PPEKKEVLLEEHDPLWLELRHAH 322
H W Y D+ + N + SK G P K+ +E +D W E H
Sbjct: 281 HSWIYQCXVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWXENSHLP 340
Query: 323 IADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDL-----------QKMVQALPQY 371
+A+E + + ++ K +AA+I R G + DL Q++V+ LP+
Sbjct: 341 FPEAAENVEAALNTY--KEEAAEI---TRKTGVTNISDLDPNSNNDTVQIQEVVKKLPEL 395
Query: 372 SDQIDKLSLHVEI 384
+ + + + H I
Sbjct: 396 TAKKNTIDTHXNI 408
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 19 KQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHR 78
+ ++ +R+L + K + WKVLI D+ I+S + ++ G++L +H
Sbjct: 26 QTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHS 85
Query: 79 RRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISR 126
R P+ + A+YF+ PT+EN+ D+ R+ LY+ ++ F S ISR
Sbjct: 86 DRDPIRDVPAVYFVMPTEENIDRLCQDL--RNQLYESYYLNFISAISR 131
>pdb|3BYV|A Chain A, Crystal Structure Of Toxoplasma Gondii Specific Rhoptry
Antigen Kinase Domain
Length = 377
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 469 VNNMRLLGGASDIKKSSTGA-FSLKFDINK--KKRAVRKDRTGEEQTWQLSRF--YPMIE 523
V +RLL G + K++ F FD+ K +K+ + + R E W LSRF YP ++
Sbjct: 124 VLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ 183
Query: 524 ELIEKLGK 531
++ G+
Sbjct: 184 SNLQTFGE 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,638,024
Number of Sequences: 62578
Number of extensions: 658568
Number of successful extensions: 1609
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 18
length of query: 622
length of database: 14,973,337
effective HSP length: 105
effective length of query: 517
effective length of database: 8,402,647
effective search space: 4344168499
effective search space used: 4344168499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)