Query 007004
Match_columns 622
No_of_seqs 250 out of 942
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 17:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 6E-117 1E-121 937.4 48.1 542 17-616 2-551 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 2.2E-83 4.8E-88 726.2 42.2 512 43-618 1-534 (564)
3 COG5158 SEC1 Proteins involved 100.0 4.4E-80 9.5E-85 669.5 46.3 533 16-618 2-545 (582)
4 KOG1299 Vacuolar sorting prote 100.0 5.1E-76 1.1E-80 604.1 40.5 503 18-617 3-515 (549)
5 KOG1302 Vacuolar sorting prote 100.0 6.9E-68 1.5E-72 564.8 39.8 531 13-618 12-571 (600)
6 KOG1301 Vesicle trafficking pr 100.0 4.1E-66 8.9E-71 537.2 37.9 443 14-475 8-473 (621)
7 PF14071 YlbD_coat: Putative c 58.5 8.2 0.00018 34.6 2.5 14 306-319 32-45 (124)
8 cd04752 Commd4 COMM_Domain con 27.1 84 0.0018 30.1 4.1 37 431-467 4-42 (174)
9 PF15079 DUF4546: Domain of un 26.2 2.6E+02 0.0055 26.5 6.8 81 273-373 16-96 (205)
10 PF01736 Polyoma_agno: Polyoma 24.3 3.4 7.5E-05 31.0 -4.5 10 598-607 24-33 (62)
11 KOG0011 Nucleotide excision re 23.6 2.4E+02 0.0051 29.8 6.8 96 362-479 216-312 (340)
12 TIGR00601 rad23 UV excision re 22.0 1.8E+02 0.0039 31.6 5.9 96 361-479 247-351 (378)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-117 Score=937.40 Aligned_cols=542 Identities=42% Similarity=0.661 Sum_probs=478.5
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCCH
Q 007004 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (622)
Q Consensus 17 sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt~ 96 (622)
+|+++++++|+.++++ +.+ .++|||||+|+.+++|+|+||+|++++++|||+||+|+++|+|+|+|+|||||+|+.
T Consensus 2 ~l~~l~~~kil~~v~~-~~k---~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~ 77 (593)
T KOG1300|consen 2 GLKELVKKKILEDVLR-VEK---KGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE 77 (593)
T ss_pred chHHHHHHHHHHHhcc-cCC---CCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence 5899999999999988 432 358999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCCCC
Q 007004 97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE 176 (622)
Q Consensus 97 ~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~~~ 176 (622)
++|+|++.||+.+.|+|++|||||++.||+++++.|.+ +.+.+.|++++|+|++|+|+|+|+|+++.|++|..+|++.
T Consensus 78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~- 155 (593)
T KOG1300|consen 78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD- 155 (593)
T ss_pred hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence 99999999998667899999999999999999999985 5678899999999999999999999999999999999976
Q ss_pred cccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCCCCCeeEE
Q 007004 177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256 (622)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p~~~~~~Ll 256 (622)
+.+....+++.+|.+|++||++||+||.|||++.....+ +.+|.++|+.+++.++.|+...+++|..++|.||
T Consensus 156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl 228 (593)
T KOG1300|consen 156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL 228 (593)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence 567778899999999999999999999999998865443 2689999999999999999767788888899999
Q ss_pred EecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHHHHHHH
Q 007004 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTS 336 (622)
Q Consensus 257 IlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~~~~~ 336 (622)
|+||++|++|||||+||||||+|||++|+||+|.|+++..+|+ ++|+++|+++|++|.++||+||+||++.|++++++
T Consensus 229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~ 306 (593)
T KOG1300|consen 229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN 306 (593)
T ss_pred EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--ccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998655553 37899999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC-CCHH
Q 007004 337 FISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD-AGLK 415 (622)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~-~~~~ 415 (622)
|.++|+.++. +++..|++||++||++||||+|++++|++|++||++||+.++. +|.+++.+||||++|. ..++
T Consensus 307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~ 380 (593)
T KOG1300|consen 307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE 380 (593)
T ss_pred HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence 9999975432 3446899999999999999999999999999999999999977 9999999999999994 3332
Q ss_pred -------HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccCcCCCC
Q 007004 416 -------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGA 488 (622)
Q Consensus 416 -------~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~~~~~~ 488 (622)
.+++++. +.++...||+|+|++|.+. ++|+.++++.+|++|.|++.+++.++.|++.+|....++.
T Consensus 381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~~~----- 453 (593)
T KOG1300|consen 381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTKDS----- 453 (593)
T ss_pred cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCccccCc-----
Confidence 3444554 5689999999999999997 5899999999999999999999999999999999887532
Q ss_pred CCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCcccCcc
Q 007004 489 FSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMR 568 (622)
Q Consensus 489 ~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~~~s~r 568 (622)
|..+ ..++.+|+|. .+.+|++|||+|.|++|||++++|+||+++|||+++++...++. +++|+|
T Consensus 454 ~~~k-----~~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~----------~~~Sar 517 (593)
T KOG1300|consen 454 FLLK-----FDPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS----------AATSAR 517 (593)
T ss_pred cccc-----CCCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC----------cccccc
Confidence 2222 2233367775 78999999999999999999999999999999999998432211 236666
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhh
Q 007004 569 SRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLL 616 (622)
Q Consensus 569 ~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~ 616 (622)
+ ++|++.+.... .+++|||+||||+||+|.+|+-
T Consensus 518 ~---~~~~~~k~~~~-----------~~~~g~ri~VfIiGGvT~SEmR 551 (593)
T KOG1300|consen 518 Y---GHPLSNKTPSA-----------FKKPGQRIIVFIIGGVTFSEMR 551 (593)
T ss_pred c---cCcccccCcch-----------hhccCceEEEEEeCCccHHHHH
Confidence 5 46776665421 4678999999999999999984
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=2.2e-83 Score=726.23 Aligned_cols=512 Identities=29% Similarity=0.536 Sum_probs=387.9
Q ss_pred eEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCCHHHHHHHHHHhccCCCCcceEEEEecC
Q 007004 43 WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSS 122 (622)
Q Consensus 43 ~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt~~~i~~i~~d~~~~~p~Y~~~hi~Ft~ 122 (622)
|||||+|+.++++||++|++++|+++||+.|+.|++.|+|+|+++|||||+|+.+|+++|++|++. +.|++|||+|++
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~ 78 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTP 78 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEeh
Confidence 999999999999999999999999999999999999999999999999999999999999999985 799999999999
Q ss_pred CCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhC-CCCcccchhHHHHHHHHHHHHHHHHhCC
Q 007004 123 PISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRIATVFASLRE 201 (622)
Q Consensus 123 ~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~-~~~~~~~~~~~l~~ia~~L~sl~~~lg~ 201 (622)
.+++.+++.|++ .++.++|.++.|++++|+|+|+|+|+|+.|.+|..+|. ..+ .+.++.+|++|+++|.++|.
T Consensus 79 ~~~~~~~~~l~~-~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~ 152 (564)
T PF00995_consen 79 RVSESLLEILAE-SGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGE 152 (564)
T ss_dssp ---HHHHHHHHH-SCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT-
T ss_pred hhhhHHHHhhhh-cCccceecccccceeEEEEccchhhhhcccchHHHHhccccc-----hhHHHHHHHHHHHHHHHhCC
Confidence 999999999987 46899999999999999999999999999999999998 544 67899999999999999999
Q ss_pred ccEEEEccCCCccccccccccchHHHHHHHHHHHHHHH----hhhhCCCCCC---CCCeeEEEecCCCCccchhhhhhhh
Q 007004 202 FPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMK----YKQSIENFPQ---TETCDLLILDRSVDQVAPIIHEWTY 274 (622)
Q Consensus 202 ~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~----~~~~~~~~p~---~~~~~LlIlDRs~D~vTPLlh~~TY 274 (622)
+|.|||+|+. .|+.+|..+.+.+.+ +...++++++ .++++|||+||++|++|||||||||
T Consensus 153 ~p~I~~~g~~-------------~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TY 219 (564)
T PF00995_consen 153 IPNIRYKGNS-------------NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTY 219 (564)
T ss_dssp --EEEE-TTC-------------HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BH
T ss_pred CCeEEEeCch-------------hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCcee
Confidence 9999999982 355566666665555 4444444432 2368999999999999999999999
Q ss_pred HHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHHhHHHhhhhcccCCC
Q 007004 275 DAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGG 354 (622)
Q Consensus 275 qami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 354 (622)
|||+||+|||++|.|+++.+...| ..++++.|+++|++|.++||+||++|++.|.++++++++++ .. ...+
T Consensus 220 e~li~d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~ 290 (564)
T PF00995_consen 220 EGLIDDLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EK------SRSK 290 (564)
T ss_dssp HHHHHHHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------S
T ss_pred eeEHHhhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cc------ccch
Confidence 999999999999999998743333 22578999999999999999999999999999999998664 10 1345
Q ss_pred CCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCH----HHHHHhhhcCCCCChh
Q 007004 355 ELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGL----KDVVKFFTTNEDVSRE 430 (622)
Q Consensus 355 ~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~~~----~~l~~~l~~~~~~~~~ 430 (622)
..++++|+++|++||+++++++.+++|++||++|++.+++++|.+++++||+|++|.+.. +.+.++|. +...+.+
T Consensus 291 ~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~ 369 (564)
T PF00995_consen 291 SKSIQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIE 369 (564)
T ss_dssp TTTHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHH
T ss_pred hhHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHH
Confidence 789999999999999999999999999999999999999999999999999999997432 24788885 4678999
Q ss_pred hHHHHHHHHHHhCCCCCCc---hHHHHHHHHcCCChhhHHHHHHHHHhcCcccccCcCCCCCCcchhhhhhhhhc---cc
Q 007004 431 NKLRLLMILAAIYPEKFQG---EKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKKRAV---RK 504 (622)
Q Consensus 431 dkLRLl~Ly~l~~~~gi~~---~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~~~~~~~~~~f~~~k~~~~~---~k 504 (622)
++|||+|||+++. |++. +++++++.++|++.+++.++.||+++|+...+.+. ..|... ++.++.. .+
T Consensus 370 d~LRLl~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~--~~~~~~---~~~~~l~~~~~~ 442 (564)
T PF00995_consen 370 DKLRLLCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNS--SNFQSI---RKKLNLISKFND 442 (564)
T ss_dssp HHHHHHHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTT--S--CTT---C-TT---HHTTC
T ss_pred HHHHHHHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCc--cchhhh---cccccccccccc
Confidence 9999999999983 4444 34567788887777999999999999998875210 011111 1222221 11
Q ss_pred ---CCCCCccccccccccchHHHHHHHHHcCCCC-CCCCCccCCCCCCccccccccccCCCCcccCccCCCCCCCCCCCC
Q 007004 505 ---DRTGEEQTWQLSRFYPMIEELIEKLGKRELP-KDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRN 580 (622)
Q Consensus 505 ---~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld-~~~fP~~~~~~~~~~~~~~~~~~~~~~~~~s~r~~r~~~W~~~~~ 580 (622)
...+.+..|.++||+|++++++|.+.+++|| +..||++.+.+....+ +..++++.+ +.|++...
T Consensus 443 ~~~~~~~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~ 510 (564)
T PF00995_consen 443 KNDKNNPKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNG-----------SSFSLRSSK-PSRSKTQP 510 (564)
T ss_dssp CCSSSSCSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC----------------SSSSSS------------
T ss_pred cccccccccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCC-----------CCccccccc-cccccccc
Confidence 1135689999999999999999999999998 9999999987632211 114555544 34443311
Q ss_pred CCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004 581 SDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLIL 618 (622)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~~ 618 (622)
...+++++||||+||+|++|+-.+
T Consensus 511 --------------~~~~~~~viVf~vGGvTy~Ei~~l 534 (564)
T PF00995_consen 511 --------------SNKPRKRVIVFFVGGVTYSEIRAL 534 (564)
T ss_dssp ----------------S-SSEEEEEEETEBEHHHHHHH
T ss_pred --------------ccCCCCEEEEEEEcCCcHHHHHHH
Confidence 124578999999999999998643
No 3
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.4e-80 Score=669.48 Aligned_cols=533 Identities=23% Similarity=0.384 Sum_probs=425.1
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCC
Q 007004 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (622)
Q Consensus 16 ~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt 95 (622)
++|+++++++|+. ++..|.+. ..|||||+|+.+..+||+|+++++|++|||++++.|+++|+|.++++|||||+||
T Consensus 2 ~dl~e~q~~~i~~-~i~~v~~~---n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~~~aiy~v~pt 77 (582)
T COG5158 2 MDLLELQKNKILD-EIFLVQPA---NIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISDLPAIYFVRPT 77 (582)
T ss_pred ccHHHHHHHHHHH-HHHhcCCC---cceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCCCCEEEEEcCc
Confidence 4599999999994 88888642 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCCC
Q 007004 96 KENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 175 (622)
Q Consensus 96 ~~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~~ 175 (622)
++|+++|++|+++..|.|..+|++|++.+...+++.+++ .++...|.++.|+++||+++|+++|+++.|..|...+.+.
T Consensus 78 ~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e-s~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~ 156 (582)
T COG5158 78 KENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE-SGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPS 156 (582)
T ss_pred hHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh-cCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCC
Confidence 999999999998656899999999999999999999987 5777889999999999999999999999999999888864
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCC---CCC
Q 007004 176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET 252 (622)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p~---~~~ 252 (622)
. ...+-.|+.+|+++|.++|++|.|||.++. .|.++|+++-..+......+-+++. +.+
T Consensus 157 ~-----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~ 218 (582)
T COG5158 157 T-----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------NAEHMAKKLSDEIRNELSINFDGVVSKNPLR 218 (582)
T ss_pred c-----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------hHHHHHHHHHHHHHHHHHhhcccccccCCCC
Confidence 3 223448999999999999999999998863 2445555544444322222212211 147
Q ss_pred eeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHHH
Q 007004 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE 332 (622)
Q Consensus 253 ~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~ 332 (622)
++|||+||+.|++|||+|+||||||+||+++|++|.|+++.....| .++|...++.+|++|.++||+||.+|+++|.+
T Consensus 219 ~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~ 296 (582)
T COG5158 219 PILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKK 296 (582)
T ss_pred ceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCchhhHHHHHHH
Confidence 9999999999999999999999999999999999999997644444 56676777889999999999999999999999
Q ss_pred HHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC
Q 007004 333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (622)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~ 412 (622)
.+++++.+++. .. ...+.+++||++||.+||++++.++.+.+|++||++|++.+++++|.++.++||++.++.+
T Consensus 297 ~~~~l~~~~~~--~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~ 370 (582)
T COG5158 297 LAKELKTKAQL--RH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGND 370 (582)
T ss_pred HHHHHHHHHhh--hh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 99999988753 21 2335799999999999999999999999999999999999999999999999999998874
Q ss_pred C---HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCC-CCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccCcCC--
Q 007004 413 G---LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEK-FQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSST-- 486 (622)
Q Consensus 413 ~---~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~g-i~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~~~~-- 486 (622)
. ..+++++++. .....+||||+|||+++. +| ....+..+++.+-|++.++...+.+|..+|....+.....
T Consensus 371 ~~~~i~Dli~~l~~--~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~ 447 (582)
T COG5158 371 VKSDISDLIELLES--GVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISL 447 (582)
T ss_pred chhhHHHHHHHHhc--CchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhccccccc
Confidence 3 2456666652 222226999999999987 55 4444567888888999999999999999998865432110
Q ss_pred --CCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCcc
Q 007004 487 --GAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA 564 (622)
Q Consensus 487 --~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~~ 564 (622)
|.-...|.........+..+...+..+++++|.|..+++..++..+.+.+..|+.+.
T Consensus 448 ~~g~~d~l~~~~n~y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~--------------------- 506 (582)
T COG5158 448 KRGDKDSLFQWFNTYSLSREHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQ--------------------- 506 (582)
T ss_pred ccCCcccccCcccccccccccCCCchHHHHHHhhcchhcccchhhhhhhhcccccchhc---------------------
Confidence 100000100001111111022446778889999999999999999888776555433
Q ss_pred cCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004 565 HSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLIL 618 (622)
Q Consensus 565 ~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~~ 618 (622)
.|.|..+ +.| +.++.. +.+.+|++|||+||.|+.|+-.+
T Consensus 507 ~s~~~~~-~k~-~~~~~~-------------~~~~~~~~VfviGG~ty~E~~~~ 545 (582)
T COG5158 507 QSLRLSR-PKG-RSRSNK-------------KIPQQRILVFVIGGVTYEELRVL 545 (582)
T ss_pred cceeecc-ccc-cccccc-------------ccccceEEEEEECCeehHHHHHH
Confidence 1456666 467 444431 34689999999999999998654
No 4
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-76 Score=604.13 Aligned_cols=503 Identities=23% Similarity=0.394 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccC-CCCCCCCCceEEEecCCH
Q 007004 18 FKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHR-RRQPLPSMEAIYFIQPTK 96 (622)
Q Consensus 18 L~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~-~R~~~~~~~aIYfi~Pt~ 96 (622)
|....|.+| +.|+.... ++.|||++|+.|+.++|+|+.+|+++++.|.++|+|++ +|+.+.+++||+||+||+
T Consensus 3 lv~~~k~yi-~~m~~~~g-----~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khLkcvvfiRPT~ 76 (549)
T KOG1299|consen 3 LVSSSKKYI-EKMIQESG-----PGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHLKCVVFIRPTP 76 (549)
T ss_pred hHHHHHHHH-HHHHHhcC-----CCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCceEEEEeccCh
Confidence 455666655 46776543 35999999999999999999999999999999999986 789999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCCCC
Q 007004 97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE 176 (622)
Q Consensus 97 ~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~~~ 176 (622)
+||+.++.++++ |+|..||||||+.+++..++.||++ +....+..++|+++||++.+.++|||+.|..|..-.+
T Consensus 77 eniq~L~~ELrn--Pry~~Y~lyFsN~i~ks~le~LAes-D~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~--- 150 (549)
T KOG1299|consen 77 ENIQLLIEELRN--PRYGEYHLYFSNIISKSDLERLAES-DEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLN--- 150 (549)
T ss_pred HHHHHHHHHhcC--CcceeEEEEEeccCCHHHHHHHHhc-chHHHHHHHHHHHHhhhccCCceeecCCchhhccccc---
Confidence 999999999974 9999999999999999999999984 5677888999999999999999999999998876432
Q ss_pred cccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCCCC-CeeE
Q 007004 177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTE-TCDL 255 (622)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p~~~-~~~L 255 (622)
+....+.++.++|+.++.+||..|.|||++++ ..|+++|+.+...+.+ .+..-+|+..+ .++|
T Consensus 151 ---w~~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~~~~lAe~vs~~i~~-E~~lFdfr~~~~~p~L 214 (549)
T KOG1299|consen 151 ---WDPGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RACKRLAEEVSYRITK-ESTLFDFRRTDSPPLL 214 (549)
T ss_pred ---cChhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HHHHHHHHHHHHHHhh-hhhhcccccCCCCCeE
Confidence 22567889999999999999999999999873 5789999999888876 34445676543 6899
Q ss_pred EEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecC-CCChHHHHhhcCcHHHHHHHHHHHH
Q 007004 256 LILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLE-EHDPLWLELRHAHIADASERLHEKM 334 (622)
Q Consensus 256 lIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~-~~D~lw~~~R~~hi~~v~~~l~~~~ 334 (622)
||+||+.||+||||+|||||||+||++||.||++.+.. ..+...+.++++|+ ++|+||.+.++.+|+|+++.|+..+
T Consensus 215 LiLDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~--~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv 292 (549)
T KOG1299|consen 215 LILDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSK--VPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLV 292 (549)
T ss_pred EEEecCCCCCchhhhHHHHHHHHHHHhccccCEEeecc--CCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865 22333445677776 8999999999999999999999999
Q ss_pred HHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCC-
Q 007004 335 TSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAG- 413 (622)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~~- 413 (622)
.+|+.+.+ .+.+..|+.||+.||..+|||+++...++.|+.+..++++..+.++|.+++++||++++.++.
T Consensus 293 ~~fq~k~~--------~~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~ 364 (549)
T KOG1299|consen 293 SEFQFKTK--------TNSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHG 364 (549)
T ss_pred HHHHHhhh--------hchhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcch
Confidence 99987532 234567999999999999999999999999999999999999999999999999999986543
Q ss_pred --HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHc--CCChhhHHHHHHHHHhcCcccccCcCCCCC
Q 007004 414 --LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLA--RLQSDDITAVNNMRLLGGASDIKKSSTGAF 489 (622)
Q Consensus 414 --~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~--gl~~~~~~~i~nL~~lG~~~~k~~~~~~~~ 489 (622)
..++.++|. +.+++..|++||+|||+|.++ ..+..+..+|++.. +.+ .--.++.-|.+.|+...+... -|
T Consensus 365 ~~~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~e-~~~~~~~~~L~~~l~~~~~-~~~~~v~~ll~~~G~~~R~~d---lf 438 (549)
T KOG1299|consen 365 ADFNDIKKLLQ-NEKVSEIDRLRLVALYALRYE-RHPPNELRQLPQILREQGP-KKPELVPFLLKYAGLHVRQGD---LF 438 (549)
T ss_pred hhHHHHHHHHc-CCcccHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHhcCC-CcchhHHHHHHhcCccccccc---cc
Confidence 346677887 678999999999999999884 66666677765542 222 234566666667766654321 23
Q ss_pred Ccc--hhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCcccCc
Q 007004 490 SLK--FDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSM 567 (622)
Q Consensus 490 ~~~--f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~~~s~ 567 (622)
+.. +...|.+ -+--++.+++|. +|.|+++++++++.+|+|++..|||+.....
T Consensus 439 ~~~~~v~i~R~~---~kglkgvENVyt--QH~P~lk~~l~~~~rgRl~~~~~p~l~~~~s-------------------- 493 (549)
T KOG1299|consen 439 GPNDLVPIARRF---IKGLKGVENVYT--QHQPLLKSTLEDLFRGRLKEIDYPFLGSQTS-------------------- 493 (549)
T ss_pred CcchhHHHHHHH---hhccCcchhhhh--ccCHHHHHHHHHHHhcccccCCCcccccccc--------------------
Confidence 322 2211211 121235677775 9999999999999999999999999985211
Q ss_pred cCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhh
Q 007004 568 RSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLI 617 (622)
Q Consensus 568 r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~ 617 (622)
+.+-|-+||||+||+||.|-..
T Consensus 494 ----------------------------~~~pq~IIVfivGGaTYEEa~~ 515 (549)
T KOG1299|consen 494 ----------------------------RDRPQDIIVFIVGGATYEEARV 515 (549)
T ss_pred ----------------------------cCCCceEEEEEECCccHHHHHH
Confidence 1134789999999999999764
No 5
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-68 Score=564.78 Aligned_cols=531 Identities=19% Similarity=0.304 Sum_probs=420.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCC-CCceEEE
Q 007004 13 GDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLP-SMEAIYF 91 (622)
Q Consensus 13 ~~~~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~-~~~aIYf 91 (622)
.++..+++.+++.++ ++|++++ | -|.||+|+..+++|+++..++.|.+|||..+..++..+-|.. .-..|||
T Consensus 12 ~~l~~lq~~a~~eL~-~lLds~p-G-----~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~~vy~ 84 (600)
T KOG1302|consen 12 LNLQGLQEVARRELI-SLLDSLP-G-----KKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQVVYF 84 (600)
T ss_pred chHHHHHHHHHHHHH-HHHhcCC-C-----ceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCeEEEE
Confidence 578899999999999 5999986 4 799999999999999999999999999988888877653333 3469999
Q ss_pred ecCCHHHHHHHHHHhcc--CCCCcceEEEEecCCCCH--HHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcch
Q 007004 92 IQPTKENVIMFLSDMSG--RSPLYKKAFVFFSSPISR--ELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERA 167 (622)
Q Consensus 92 i~Pt~~~i~~i~~d~~~--~~p~Y~~~hi~Ft~~~~~--~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~ 167 (622)
++|+.++++.|++++++ +...-+.||++| +|+ .+++.+.+..++.+.+ .+.|++++++|+|.|++||+.|++
T Consensus 85 ~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSlEl~~~ 160 (600)
T KOG1302|consen 85 VRPRLENMQLIAEHVENVQRDGFTRDYHVIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSLELPNS 160 (600)
T ss_pred EcCchHHHHHHHHHHhhhhhchhcceeEEEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhccchHH
Confidence 99999999999999874 234578999999 554 3677777778888665 699999999999999999999999
Q ss_pred hhhhhCCCCcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCC--
Q 007004 168 LEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIE-- 245 (622)
Q Consensus 168 f~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~-- 245 (622)
|.++|.+++ .+.+..+|+++.+++.++|.+|.|+..|+ .|+++++.+.+..++..
T Consensus 161 ~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~------------------~ak~~~~l~~~l~~e~~t~ 217 (600)
T KOG1302|consen 161 FLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE------------------CAKRVWELLKKLEREEATE 217 (600)
T ss_pred HHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH------------------HHHHHHHHHHHHhhccccc
Confidence 999999877 56789999999999999999999999988 45666666665554422
Q ss_pred CCCC-CCCeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCC----CC----CCCcceeEecCCCChHHH
Q 007004 246 NFPQ-TETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSK----TG----GPPEKKEVLLEEHDPLWL 316 (622)
Q Consensus 246 ~~p~-~~~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~----~g----~~~e~k~~~L~~~D~lw~ 316 (622)
+.+. +.++.||++||++|++||||+|+||+|++||+|+|.+|.++++.+.. .| +..+++.++++..|++|.
T Consensus 218 n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deIy~ 297 (600)
T KOG1302|consen 218 NNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEIYA 297 (600)
T ss_pred cCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHHHH
Confidence 1222 45789999999999999999999999999999999999988866421 11 234667888899999999
Q ss_pred HhhcCcHHHHHHHHHHHHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHh
Q 007004 317 ELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELR 396 (622)
Q Consensus 317 ~~R~~hi~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~ 396 (622)
++||+||..|++.+++++++++.... .+.+++|++||++||++||.++++++.++.|+++||.+++......
T Consensus 298 eiR~k~f~~v~~~lsk~ak~l~~~~~--------~r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~~~ 369 (600)
T KOG1302|consen 298 EIRNKHFNAVGPLLSKKAKELQAQYE--------TRRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKNED 369 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999987653 1356889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHhhhc--CCCCChhhHHHHHHHHHHhCCCCCCchHH----HHHHHHcCCChhhHHHHH
Q 007004 397 LRELGQLEQDLVFGDAGLKDVVKFFTT--NEDVSRENKLRLLMILAAIYPEKFQGEKG----QNIMKLARLQSDDITAVN 470 (622)
Q Consensus 397 l~~~~~~EQ~la~g~~~~~~l~~~l~~--~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~----~kllq~~gl~~~~~~~i~ 470 (622)
|.++..+||+++.|.+..+. .++|++ ....+...+|||+||.+++. +|++++++ +.++|.||+ +|+.+|.
T Consensus 370 f~~~l~lE~ell~~~d~~k~-~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--ehl~tl~ 445 (600)
T KOG1302|consen 370 FRKLLKLEHELLEGNDSDKD-FDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EHLLTLQ 445 (600)
T ss_pred HHHHHHHHHHHHhccCcccc-hHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HHHHHHH
Confidence 99999999999999865443 333332 24789999999999999987 79988774 568999999 9999999
Q ss_pred HHHHhcCcccccCcCCC--CC-Ccchh-hhhhhhhcccC---CCCCccccccccccchHHHHHHHHHcCCCCCCCCCccC
Q 007004 471 NMRLLGGASDIKKSSTG--AF-SLKFD-INKKKRAVRKD---RTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMN 543 (622)
Q Consensus 471 nL~~lG~~~~k~~~~~~--~~-~~~f~-~~k~~~~~~k~---~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~ 543 (622)
||+++|+...+...+.. .. .-.|+ ..++.+....+ .+|.|++|+||||+|++++|+|++++...-...|--++
T Consensus 446 nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~ 525 (600)
T KOG1302|consen 446 NLEKAGLLREQTGGRKLHTKSSKRNYSTWANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIR 525 (600)
T ss_pred HHHHcCCcccccCCCcchhhHHHHHHHHHHhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHc
Confidence 99999999875422100 00 00232 13344444433 25889999999999999999999999865555554444
Q ss_pred CCCCCccccccccccCCCCcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004 544 EPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLIL 618 (622)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~~ 618 (622)
..|-..- ...+|.+..-... ..+ ...+..++||++||.|+.||.++
T Consensus 526 ~l~g~~~--------------------e~~~~~~~~~~~~------~~~---~g~~R~~lVff~GG~T~~EIAal 571 (600)
T KOG1302|consen 526 NLPGPHF--------------------EEVTWTPSDIASK------NNS---PGALRVTLVFFLGGCTYAEIAAL 571 (600)
T ss_pred cCCCCch--------------------hhcccChhhhccc------ccC---CCCcceEEEEEECCccHHHHHHH
Confidence 3321100 0013332211100 000 01357899999999999999875
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-66 Score=537.18 Aligned_cols=443 Identities=23% Similarity=0.417 Sum_probs=366.7
Q ss_pred CchhHHHHHHHHHHHHHHHhcc----CCC-CCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCce
Q 007004 14 DYKNFKQISRERLLYEMLRSAK----TGT-SKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEA 88 (622)
Q Consensus 14 ~~~sL~~~~r~~ll~~~l~~v~----~~~-~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~a 88 (622)
-..|||+.|-..|. .||+--+ .+. +++-|||||+|..+..|||.+.+++||+++|||+...|.+.|+|+|+++|
T Consensus 8 ~~~slRe~Qi~al~-~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPA 86 (621)
T KOG1301|consen 8 AAASLRERQIVALK-KMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPA 86 (621)
T ss_pred hhhhHHHHHHHHHH-HHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCe
Confidence 46789999999988 5886322 122 25679999999999999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---cCCcccccCeEEEEecceEecCCCceEecCc
Q 007004 89 IYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLEYFAIDSQGFVTDDE 165 (622)
Q Consensus 89 IYfi~Pt~~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~---~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p 165 (622)
||||+||.+||++|++|+++ ..|..||+.|++++|+..+|.||. ..|....|+.+.+-+++|+.+|+|+|+|.++
T Consensus 87 VYFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~ 164 (621)
T KOG1301|consen 87 VYFVSPTEENIDRIIQDLSK--GLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQ 164 (621)
T ss_pred EEEeCCchHhHHHHHHHHHH--hhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhccc
Confidence 99999999999999999985 599999999999999999999984 4678888999999999999999999999999
Q ss_pred chhhhhhCCCCcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhC-
Q 007004 166 RALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSI- 244 (622)
Q Consensus 166 ~~f~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~- 244 (622)
.+|..+..|+......+..+++||++|+++|.+||++|+|||-.+. +++++|++|-+++.+.+-.-++..
T Consensus 165 ~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~---------aAEmvA~kL~qKLRd~l~d~k~~lf 235 (621)
T KOG1301|consen 165 NSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGG---------AAEMVARKLDQKLRDNLRDTKNNLF 235 (621)
T ss_pred ccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCC---------HHHHHHHHHHHHHHHHhHhhcccce
Confidence 9998888876655667889999999999999999999999995442 236778888887777775433321
Q ss_pred ---CCCCCCCCeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcC
Q 007004 245 ---ENFPQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHA 321 (622)
Q Consensus 245 ---~~~p~~~~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~ 321 (622)
+.+..-+|++|+|+||++|++||+-|.||||||+||+|+++.|+++++.+. ....+|...|+.+|+||....+.
T Consensus 236 t~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~---~~~~~k~yDld~~D~fW~~n~~~ 312 (621)
T KOG1301|consen 236 TMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES---KRKKKKSYDLDPNDKFWRRNKGS 312 (621)
T ss_pred eccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc---cCCCCccccCCCccHHHHhcCCC
Confidence 111123589999999999999999999999999999999999999998643 23346788999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhHHHhhhh--c---ccCC---CCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHH
Q 007004 322 HIADASERLHEKMTSFISKNKAAQIQH--S---ARDG---GELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIR 393 (622)
Q Consensus 322 hi~~v~~~l~~~~~~~~~~~~~~~~~~--~---~~~~---~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~ 393 (622)
.|++|.+.|.+.+.+++++. +++++ | ..+. -..+...+++.|.+||++.+.++.+.+|++||.++++.++
T Consensus 313 pFP~VAE~Ve~eL~~Yk~~~--~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~Ik 390 (621)
T KOG1301|consen 313 PFPEVAENVEEELESYKNEE--AEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIK 390 (621)
T ss_pred CCchHHHHHHHHHHHHHhhH--HHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 34432 1 1111 1234458999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHH---HHHHHHcCCChhhHHHHH
Q 007004 394 ELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKG---QNIMKLARLQSDDITAVN 470 (622)
Q Consensus 394 ~~~l~~~~~~EQ~la~g~~~~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~---~kllq~~gl~~~~~~~i~ 470 (622)
+|+|+.+.++|+++..+.- ...+++++.+....+++||||++++|.++.. -+.+.++ +..++.+|.....+..+.
T Consensus 391 eR~lD~ff~~E~~~~~~~l-~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~e-t~~~s~le~~e~al~e~~~d~~Al~yvk 468 (621)
T KOG1301|consen 391 ERKLDDFFEVEKKIMSTTL-DRSLLDILEDGEAGTPEDKLRLFIIYYLSTE-TVPQSDLEAVENALTEAGCDLNALKYVK 468 (621)
T ss_pred HhhhhHHHHHhcccccccc-cHHHHHHHhcccCCChHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999999999987332 3456777765456899999999999999874 4555554 456777888666666666
Q ss_pred HHHHh
Q 007004 471 NMRLL 475 (622)
Q Consensus 471 nL~~l 475 (622)
.+..+
T Consensus 469 r~k~~ 473 (621)
T KOG1301|consen 469 RLKEI 473 (621)
T ss_pred HHHHH
Confidence 55443
No 7
>PF14071 YlbD_coat: Putative coat protein
Probab=58.46 E-value=8.2 Score=34.65 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=13.1
Q ss_pred EecCCCChHHHHhh
Q 007004 306 VLLEEHDPLWLELR 319 (622)
Q Consensus 306 ~~L~~~D~lw~~~R 319 (622)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 68899999999999
No 8
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=27.07 E-value=84 Score=30.06 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhC--CCCCCchHHHHHHHHcCCChhhHH
Q 007004 431 NKLRLLMILAAIY--PEKFQGEKGQNIMKLARLQSDDIT 467 (622)
Q Consensus 431 dkLRLl~Ly~l~~--~~gi~~~~~~kllq~~gl~~~~~~ 467 (622)
-|+||+|.+.+.+ ++.++.++..++.+.+|+...++.
T Consensus 4 v~~k~~~~~v~~~~~~~~~~~~~~~kl~~~~~~~~~~lk 42 (174)
T cd04752 4 VKMKLLCAQVLKDLLGEGIDYEKVLKLTADAKFESGDVK 42 (174)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHhCCCHhhHH
Confidence 4889999887642 566888888889888888665543
No 9
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=26.24 E-value=2.6e+02 Score=26.49 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=44.2
Q ss_pred hhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHHhHHHhhhhcccC
Q 007004 273 TYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARD 352 (622)
Q Consensus 273 TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~~~~~~~~~~~~~~~~~~~~~ 352 (622)
+|-|.+-||-+=-.-+|.|......|.- ..-.-.-++=+++| +|-+.|.+++.++..-....
T Consensus 16 nYkavCleLKpEpTKtydyKgvKqeGpf-----tk~G~T~eLkNeLR-----EVREELkEKmeEIKQIKdiM-------- 77 (205)
T PF15079_consen 16 NYKAVCLELKPEPTKTYDYKGVKQEGPF-----TKTGGTQELKNELR-----EVREELKEKMEEIKQIKDIM-------- 77 (205)
T ss_pred hHHHHHHhcCCccceeechhhhhhcCCc-----cCCcccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH--------
Confidence 6889988886544446666432112210 00112234444554 78888888888876543321
Q ss_pred CCCCCHHHHHHHHHhccchHH
Q 007004 353 GGELSTKDLQKMVQALPQYSD 373 (622)
Q Consensus 353 ~~~~s~~dl~~~v~~Lp~~~~ 373 (622)
..+.+.+.+||.-+.++|+
T Consensus 78 --DKDFDKL~EFVEIMKeMQk 96 (205)
T PF15079_consen 78 --DKDFDKLHEFVEIMKEMQK 96 (205)
T ss_pred --hhhHHHHHHHHHHHHHHHH
Confidence 2356666666665554443
No 10
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=24.34 E-value=3.4 Score=31.03 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=7.9
Q ss_pred CCceEEEEEe
Q 007004 598 IGFIICRFII 607 (622)
Q Consensus 598 ~~~r~ivfv~ 607 (622)
.-|||||||+
T Consensus 24 rAQRifiFiL 33 (62)
T PF01736_consen 24 RAQRIFIFIL 33 (62)
T ss_pred HHHHHHHHHH
Confidence 3599999974
No 11
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=23.62 E-value=2.4e+02 Score=29.81 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=57.0
Q ss_pred HHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCHHHHHHhhhcCCCCChhhHHHHHHHHHH
Q 007004 362 QKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAA 441 (622)
Q Consensus 362 ~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~~~~~l~~~l~~~~~~~~~dkLRLl~Ly~l 441 (622)
.+|++.-|||+.++..+..-=.|+..++..+-+.+ ..+..+=|. ...+++.+|.. + ..+
T Consensus 216 l~fLr~~~qf~~lR~~iqqNP~ll~~~Lqqlg~~n-P~L~q~Iq~------nqe~Fl~mlne-p---~~~---------- 274 (340)
T KOG0011|consen 216 LEFLRNQPQFQQLRQMIQQNPELLHPLLQQLGKQN-PQLLQLIQE------NQEAFLQLLNE-P---VEG---------- 274 (340)
T ss_pred hhhhhccHHHHHHHHHHhhCHHHHHHHHHHHhhhC-HHHHHHHHH------HHHHHHHHhhc-c---ccc----------
Confidence 57899999999999999888888888888774432 111111111 12345556542 1 111
Q ss_pred hCCCCCCchHHHHHH-HHcCCChhhHHHHHHHHHhcCcc
Q 007004 442 IYPEKFQGEKGQNIM-KLARLQSDDITAVNNMRLLGGAS 479 (622)
Q Consensus 442 ~~~~gi~~~~~~kll-q~~gl~~~~~~~i~nL~~lG~~~ 479 (622)
--++|.. .-=.... +...+++++..+|..|+-||+..
T Consensus 275 ~~~~~~~-~~~~~~~~~~I~vtpee~eAIeRL~alGF~r 312 (340)
T KOG0011|consen 275 GDGGGTG-APAAEGPGHQIQVTPEEKEAIERLEALGFPR 312 (340)
T ss_pred ccccccc-cccccCCcceEecCHHHHHHHHHHHHhCCcH
Confidence 1111111 1001111 34578899999999999999853
No 12
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.01 E-value=1.8e+02 Score=31.57 Aligned_cols=96 Identities=9% Similarity=0.105 Sum_probs=57.1
Q ss_pred HHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 007004 361 LQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILA 440 (622)
Q Consensus 361 l~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~~~~~l~~~l~~~~~~~~~dkLRLl~Ly~ 440 (622)
..++++..|+|+..+..+...=.+...++..+.+.+ -+++++|.. +++.-||||.-..
T Consensus 247 ~l~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql~~~n------------------P~l~q~I~~----n~e~Fl~ll~~~~ 304 (378)
T TIGR00601 247 PLEFLRNQPQFQQLRQVVQQNPQLLPPLLQQIGQEN------------------PQLLQQISQ----HPEQFLQMLNEPV 304 (378)
T ss_pred hHHHhhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhC------------------HHHHHHHHH----CHHHHHHHhcCcc
Confidence 458888999999999988888888888887774432 134444432 2344444433221
Q ss_pred Hh---------CCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcc
Q 007004 441 AI---------YPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGAS 479 (622)
Q Consensus 441 l~---------~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~ 479 (622)
-- -.++..+..-... ....+++++...|..|..||+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~lT~eE~~AIeRL~~LGF~r 351 (378)
T TIGR00601 305 GELAGESDMEGGVGAIAEAGLPQM-NQIQVTPEEKEAIERLCALGFDR 351 (378)
T ss_pred cccccccccccccccccccCcccc-cccccCHHHHHHHHHHHHcCCCH
Confidence 00 0011211000000 12458899999999999999864
Done!