Query 007004
Match_columns 622
No_of_seqs 250 out of 942
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 8E-109 3E-113 929.2 45.4 537 16-617 4-552 (594)
2 3puk_A Syntaxin-binding protei 100.0 4E-106 1E-110 907.2 38.4 529 15-617 7-547 (592)
3 3c98_A Syntaxin-binding protei 100.0 3E-102 1E-106 883.6 46.9 540 14-618 14-565 (606)
4 1epu_A S-SEC1; parallel beta-s 100.0 2E-101 8E-106 874.1 44.9 543 16-618 1-555 (591)
5 2xhe_A UNC18; exocytosis, exoc 100.0 2E-100 5E-105 873.7 51.6 564 16-618 2-584 (650)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 1.3E-87 4.3E-92 769.3 38.6 543 14-618 15-627 (671)
7 1y9j_A SEC1 family domain cont 100.0 4.2E-30 1.4E-34 238.5 9.5 133 16-151 20-159 (159)
8 3he4_B Synzip5; heterodimeric 46.0 45 0.0015 22.3 4.9 32 356-387 3-34 (46)
9 3ci9_A Heat shock factor-bindi 20.9 1.8E+02 0.0061 20.7 4.9 31 357-392 3-33 (48)
10 4fmw_A RNA (guanine-9-)-methyl 15.0 45 0.0015 31.3 0.8 10 604-613 122-131 (197)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=8.2e-109 Score=929.24 Aligned_cols=537 Identities=30% Similarity=0.536 Sum_probs=448.9
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCC
Q 007004 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (622)
Q Consensus 16 ~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt 95 (622)
++|++++|++|+++||+++++ .++|||||+|+.+++|||+||++++|+++||++||+|+++|+|+|+++|||||+||
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt 80 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS 80 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence 579999999999889999864 35799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCC
Q 007004 96 KENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD 174 (622)
Q Consensus 96 ~~~i~~i~~d~~~-~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~ 174 (622)
.+||++|++||++ ..++|++|||||++.||+.+++.|++ .++.+.|+++.|+++||+|+|+++|||++|++|..+|++
T Consensus 81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~ 159 (594)
T 1dn1_A 81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 159 (594)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence 9999999999974 13699999999999999999999997 478899999999999999999999999999999999996
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCC---CCC
Q 007004 175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTE 251 (622)
Q Consensus 175 ~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p---~~~ 251 (622)
+++ ......++.+|++|+++|.++|++|.|||+|+. ..|+++|+.|+++|++|..++++++ ...
T Consensus 160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~ 226 (594)
T 1dn1_A 160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226 (594)
T ss_dssp GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence 542 345778999999999999999999999999873 2478899999999999887665543 234
Q ss_pred CeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHH
Q 007004 252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH 331 (622)
Q Consensus 252 ~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~ 331 (622)
+++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..++|++.|+++|++|.++||+||++|++.|.
T Consensus 227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 78999999999999999999999999999999999999998632 2234568899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Q 007004 332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD 411 (622)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~ 411 (622)
+++++|+++++.. ..+..|++||++||++||+|+++++.+++|++||++|++.+++ .|.+++++||+|++|.
T Consensus 305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~ 376 (594)
T 1dn1_A 305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT 376 (594)
T ss_dssp HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 9999999876421 1245688999999999999999999999999999999999987 8999999999999986
Q ss_pred CC--------HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccC
Q 007004 412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK 483 (622)
Q Consensus 412 ~~--------~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~ 483 (622)
+. .+.++++|. +++++.+|||||+|||++++ +|++++++.+|++++|++.+++.+|.||+++|+...++.
T Consensus 377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~ 454 (594)
T 1dn1_A 377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS 454 (594)
T ss_dssp CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence 42 245667776 56899999999999999987 699999999999999999999999999999998876432
Q ss_pred cCCCCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCc
Q 007004 484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPV 563 (622)
Q Consensus 484 ~~~~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~ 563 (622)
.. .|.+++.++++ +.+++|++|||+|+++++||++++|+||+++|||++++++...+ .+
T Consensus 455 ~~----------~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~----------~~ 513 (594)
T 1dn1_A 455 TL----------RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS----------TT 513 (594)
T ss_dssp GG----------GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC------------------
T ss_pred cc----------ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc----------cc
Confidence 10 12233444554 56899999999999999999999999999999999987642110 01
Q ss_pred ccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhh
Q 007004 564 AHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLI 617 (622)
Q Consensus 564 ~~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~ 617 (622)
++|+ |+|+||+.+++. +.++|||+||||+||+||+|.-.
T Consensus 514 ~~s~---r~~~w~~~~~~~------------~~~~~~riivFivGG~Ty~E~r~ 552 (594)
T 1dn1_A 514 AVSA---RYGHWHKNKAPG------------EYRSGPRLIIFILGGVSLNEMRC 552 (594)
T ss_dssp ---------------------------------CCCCEEEEEEETCEEHHHHHH
T ss_pred cccc---ccccccccCCcc------------ccccCCcEEEEEeCCccHHHHHH
Confidence 2344 557999876542 23579999999999999999754
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=3.9e-106 Score=907.19 Aligned_cols=529 Identities=27% Similarity=0.454 Sum_probs=442.0
Q ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecC
Q 007004 15 YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQP 94 (622)
Q Consensus 15 ~~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~P 94 (622)
.++||+++|++|+++||+++++ +++|||||+|+.+++|||+||++++|+++||++||+|+++|+|+|+++|||||+|
T Consensus 7 ~~~lk~~~~~~l~~~~l~~v~~---~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~P 83 (592)
T 3puk_A 7 ERGLKSVVWRKIKTAVFDDCRK---EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISP 83 (592)
T ss_dssp CCCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECS
T ss_pred ChhHHHHHHHHHHHHHHHhhcc---cCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeC
Confidence 4679999999999889999964 3579999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhC
Q 007004 95 TKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG 173 (622)
Q Consensus 95 t~~~i~~i~~d~~~~-~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~ 173 (622)
|.+||++|++||++. .++|+.|||||++.+|+.+++.| + +++.+.|+++.|+++||+|+|+++|||++|++|..+|+
T Consensus 84 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~ 161 (592)
T 3puk_A 84 TPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYS 161 (592)
T ss_dssp CHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSC
T ss_pred CHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcC
Confidence 999999999999842 35899999999999999999999 4 57889999999999999999999999999999999999
Q ss_pred CCCc-ccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHH-hhhhCCCCCC-C
Q 007004 174 DEEN-SRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMK-YKQSIENFPQ-T 250 (622)
Q Consensus 174 ~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~-~~~~~~~~p~-~ 250 (622)
++.+ .......++.+|++|+++|.++|++|.|||+|++. .-|+++|+.++++|++ ++..++.++. .
T Consensus 162 ~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~-----------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~ 230 (592)
T 3puk_A 162 PDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPL-----------DNASKLAQLVEKKLEDYYKIDEKGLIKGK 230 (592)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSS-----------SHHHHHHHHHHHHHHHSSSSCSSCSCCSC
T ss_pred CcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCch-----------HHHHHHHHHHHHHHHHHHhccCCCcCCCC
Confidence 7542 13457899999999999999999999999998742 1256899999999988 5544444433 4
Q ss_pred CCeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHH
Q 007004 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERL 330 (622)
Q Consensus 251 ~~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l 330 (622)
.+++|||+||++|++|||+||||||||+||+|||++|+|+|+. .| ++|++.|+++|++|.++||+||++|++.|
T Consensus 231 ~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l 304 (592)
T 3puk_A 231 TQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEI 304 (592)
T ss_dssp CSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTS
T ss_pred CCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHH
Confidence 5899999999999999999999999999999999999999874 23 56789999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Q 007004 331 HEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFG 410 (622)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g 410 (622)
.+++++|+++++. ..+..|++||++||++||+|+++++.+++|++||++|++.+++ +|.+++++||+|++|
T Consensus 305 ~~~~~~~~~~~~~--------~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g 375 (592)
T 3puk_A 305 PKLMKEISSTKKA--------TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALG 375 (592)
T ss_dssp CSCSTTTTTCC---------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhc--------ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 9999999876542 1245689999999999999999999999999999999999987 899999999999998
Q ss_pred CCC----H----HHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCccccc
Q 007004 411 DAG----L----KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIK 482 (622)
Q Consensus 411 ~~~----~----~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~ 482 (622)
.+. . +.++++|. +++++.+|||||+|||++++ +|++++++.+|++++|+++ ++.+|.||+++|+...++
T Consensus 376 ~d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~ 452 (592)
T 3puk_A 376 TDAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPP 452 (592)
T ss_dssp SCTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSS
T ss_pred CCccchhhHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccC
Confidence 642 1 23455665 56899999999999999987 7999999999999999987 899999999999887643
Q ss_pred CcCCCCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCC
Q 007004 483 KSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPP 562 (622)
Q Consensus 483 ~~~~~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~ 562 (622)
. +..++.+|.+ +.|++|++|||+|+++++||++++|+||++.|||+++++.+... +
T Consensus 453 ~-------------~~~~~~rk~~-~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~---------~- 508 (592)
T 3puk_A 453 S-------------QQAKPLRKDR-SAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNG---------S- 508 (592)
T ss_dssp B-------------SSCCCCCCCC-CCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC---------------------
T ss_pred c-------------cccCcccccC-CCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccC---------C-
Confidence 1 1122344443 56899999999999999999999999999999999987632110 0
Q ss_pred cccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhh
Q 007004 563 VAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLI 617 (622)
Q Consensus 563 ~~~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~ 617 (622)
++. |+|+|+| +.+.+. ++++|||+||||+||+|++|+-.
T Consensus 509 ~~~---s~r~~~w-~~~~~~------------~~~~~~riiVFivGGvTysE~r~ 547 (592)
T 3puk_A 509 GAV---SARQKPR-TNYLEL------------DRKNGSRLIIFVIGGITYSEMRC 547 (592)
T ss_dssp ------------C-CCCCCC------------CCSCCSEEEEEEETCEEHHHHHH
T ss_pred ccc---ccccccc-ccCccc------------cccCCCeEEEEEeCCcCHHHHHH
Confidence 112 4455799 554432 24579999999999999999854
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=2.9e-102 Score=883.63 Aligned_cols=540 Identities=29% Similarity=0.524 Sum_probs=447.0
Q ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEec
Q 007004 14 DYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQ 93 (622)
Q Consensus 14 ~~~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~ 93 (622)
.|++||+++|++|+++||+++++ +++|||||+|+.|++|||+||+++||+++|||+||+|+++|+|+|+++|||||+
T Consensus 14 ~p~~l~~~~~~~~l~~~i~~v~~---~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~ 90 (606)
T 3c98_A 14 APIGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLIT 90 (606)
T ss_dssp --CCHHHHHHHHHHHHTHHHHCB---TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEEC
T ss_pred CcHHHHHHHHHHHHHHHHhccCC---CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEc
Confidence 46779999999999999999974 357999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhh
Q 007004 94 PTKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELF 172 (622)
Q Consensus 94 Pt~~~i~~i~~d~~~~-~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~ 172 (622)
||.+||++|++||++. .++|+.|||||++.+|+.++++|++ .++.+.|+++.|+++||+|+|+++|||++|++|..+|
T Consensus 91 Pt~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~-~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~ 169 (606)
T 3c98_A 91 PSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFY 169 (606)
T ss_dssp CCHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHT-SGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHH
T ss_pred CCHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCcccccCeEEEEecchhhcCCcEEEecCCchHHHhc
Confidence 9999999999999742 3589999999999999999999997 4678899999999999999999999999999999999
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCC---C
Q 007004 173 GDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---Q 249 (622)
Q Consensus 173 ~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p---~ 249 (622)
++++ .......++++|++|+++|.++|++|.|||+|+. ..|+.+|+.++++|+.+.++++.++ .
T Consensus 170 ~~~~-~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~------------~~~~~la~~~~~~l~~~~~~~~~~~~~~~ 236 (606)
T 3c98_A 170 SPHK-AQMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPD 236 (606)
T ss_dssp CGGG-TTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------HHHHHHHHHHHHHHHHHHHHCTTTTCSTT
T ss_pred CCcc-cccchHHHHHHHHHHHHHHHHcCCCCeEEEecCc------------hHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 8653 2334678999999999999999999999999874 2467899999999999988766543 3
Q ss_pred CCCeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHH
Q 007004 250 TETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASER 329 (622)
Q Consensus 250 ~~~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~ 329 (622)
..+++|||+||++|++|||+||||||||+||+|||++|+|+++.+ ..+..++|++.|+++|++|.++||+||++|++.
T Consensus 237 ~~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~--~~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~ 314 (606)
T 3c98_A 237 KARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETS--GIGEARVKEVLLDEDDDLWIALRHKHIAEVSQE 314 (606)
T ss_dssp TTSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEE--SSSSEEEEEEECSTTCHHHHHHTTSBHHHHHHH
T ss_pred CCCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecC--CCCCccceEeecCCCchhHHHHhccCHHHHHHH
Confidence 458999999999999999999999999999999999999999863 223455788999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 007004 330 LHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVF 409 (622)
Q Consensus 330 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~ 409 (622)
|.+++++|+++++. ..++..|++||++||++||+|+++++.+++|++||++|++.++ ++|.+++++||+|++
T Consensus 315 l~~~~~~~~~~~~~-------~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~ 386 (606)
T 3c98_A 315 VTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAM 386 (606)
T ss_dssp HHHHHHHHHHHTTC--------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-------hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 99999999876542 1234568899999999999999999999999999999999995 689999999999999
Q ss_pred CCCC--------HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccc
Q 007004 410 GDAG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDI 481 (622)
Q Consensus 410 g~~~--------~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k 481 (622)
|.+. .+.++++|. +++++..|||||+|||++++ +|++++++.++++++|++..++.++.||..+|+...+
T Consensus 387 ~~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~ 464 (606)
T 3c98_A 387 GTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVT 464 (606)
T ss_dssp SBCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBC
T ss_pred CCCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccc
Confidence 8542 246778886 57899999999999999987 6899999999999999999999999999999988764
Q ss_pred cCcCCCCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCC
Q 007004 482 KKSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQP 561 (622)
Q Consensus 482 ~~~~~~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~ 561 (622)
.... .+..+...+. ...+.+|++|||+|++++++|++++|+|+++.|||+.+++.....
T Consensus 465 ~~~~----------~~~~~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~---------- 523 (606)
T 3c98_A 465 DSTL----------RRRSKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS---------- 523 (606)
T ss_dssp CCTT----------TCCCCCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC----------------
T ss_pred cccc----------ccccchhhcc-CCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc----------
Confidence 4211 0111112222 245788999999999999999999999999999999887643221
Q ss_pred CcccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004 562 PVAHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLIL 618 (622)
Q Consensus 562 ~~~~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~~ 618 (622)
.+..+.|.++|++++.+. ..+++||+||||+||+|+.|+-.+
T Consensus 524 ---~~~~~~~~~~~~~~~~~~------------~~~~~~~iIVFvvGGvTy~E~~~l 565 (606)
T 3c98_A 524 ---TTAVSARYGHWHKNKAPG------------EYRSGPRLIIFILGGVSLNEMRCA 565 (606)
T ss_dssp -----------------------------------CCCSEEEEEEETCEEHHHHHHH
T ss_pred ---ccccccccCCccccCCCC------------CCCCCCEEEEEEECCcCHHHHHHH
Confidence 112233447899876653 245689999999999999998543
No 4
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=2.4e-101 Score=874.10 Aligned_cols=543 Identities=28% Similarity=0.493 Sum_probs=441.8
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCC
Q 007004 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (622)
Q Consensus 16 ~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt 95 (622)
++|++++|++|++++++.+++. ++|||||+|+.++++||+||++++|+++||++|+.|+++|+|+|+++|||||+||
T Consensus 1 ~~l~~~~~~~~~~~i~~~~~~~---~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt 77 (591)
T 1epu_A 1 MALKTAVHEKIMNDVVLAVKKN---AEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPT 77 (591)
T ss_dssp -CHHHHHHHHHHHHTHHHHCSS---SCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCC
T ss_pred CChHHHHHHHHHHHHHHhhccC---CCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCC
Confidence 3699999999999999998642 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCC
Q 007004 96 KENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD 174 (622)
Q Consensus 96 ~~~i~~i~~d~~~~-~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~ 174 (622)
.+||++|++||++. .|+|+.|||||++.+|+.+++.|+++ ++.+.|+++.|+++||+|+|+++|||++|++|..+|++
T Consensus 78 ~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~ 156 (591)
T 1epu_A 78 EESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNP 156 (591)
T ss_dssp HHHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCG
T ss_pred HHHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCC
Confidence 99999999999852 47999999999999999999999985 57889999999999999999999999999999999986
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCCCC---CC
Q 007004 175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TE 251 (622)
Q Consensus 175 ~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~p~---~~ 251 (622)
.+ .......++.+|++|+++|.++|++|.|||+|++ ..|+++|+.++++|.+|.++++.|+. ..
T Consensus 157 ~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~ 223 (591)
T 1epu_A 157 SR-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDF------------DENASFAQLVQQKLDAYRADDPTMGEGPQKD 223 (591)
T ss_dssp GG-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------THHHHHHHHHHHHHHHHHHTCTTTTCHHHHT
T ss_pred cc-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCC------------cHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 42 1234678999999999999999999999999884 25789999999999999877766643 35
Q ss_pred CeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHH
Q 007004 252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH 331 (622)
Q Consensus 252 ~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~ 331 (622)
+++|||+||++|++|||+||||||||+||+|||++|+|+++.+ .++..++|++.|+++|++|+++||+||++|++.|.
T Consensus 224 ~~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 301 (591)
T 1epu_A 224 RSQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVT 301 (591)
T ss_dssp SCEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHH
T ss_pred CceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999753 22345668899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Q 007004 332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD 411 (622)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~ 411 (622)
+++++|+++++..+ .++..|++||++||++||+|+++++.+++|++||++|++.+++ +|.+++++||+|++|.
T Consensus 302 ~~~~~~~~~~~~~~------~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~ 374 (591)
T 1epu_A 302 KKLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGT 374 (591)
T ss_dssp HHHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSB
T ss_pred HHHHHHHHhccccc------cccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 99999998764211 0235688999999999999999999999999999999999999 9999999999999987
Q ss_pred CC--------HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccC
Q 007004 412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK 483 (622)
Q Consensus 412 ~~--------~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~ 483 (622)
+. .+.++++|. +++.+.+|||||+|||++++ +|++++++.++++++|++.+++.+|.||+++|+...+..
T Consensus 375 d~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~ 452 (591)
T 1epu_A 375 DADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDG 452 (591)
T ss_dssp CTTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCT
T ss_pred CccccccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCC
Confidence 42 235777775 56789999999999999998 589999999999999999899999999999999876432
Q ss_pred cCCCCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCc
Q 007004 484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPV 563 (622)
Q Consensus 484 ~~~~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~ 563 (622)
.+...+...+ .+ .++. .+.+..|++|||+|++++++|++++|+|+++.|||+.++++... .
T Consensus 453 ~~~~~~~~~~--~~----~~~~-~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~----------~-- 513 (591)
T 1epu_A 453 GRRKIPQPYH--TH----NRKE-RQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPS----------C-- 513 (591)
T ss_dssp TSCCCCCTTS--GG----GSCC-CCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-----------------
T ss_pred cccccccccc--cc----cccc-CCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCccc----------c--
Confidence 1111111100 00 1122 25677899999999999999999999999999999987643211 0
Q ss_pred ccCccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004 564 AHSMRSRRTPTWARPRNSDDGYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLIL 618 (622)
Q Consensus 564 ~~s~r~~r~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~~ 618 (622)
...+++|+++|++.+++. ..+.++|+||||+||+|++|+-.+
T Consensus 514 -~~~~s~~~~~~~~~~~~~------------~~~~~~~viVF~vGG~Ty~E~~~l 555 (591)
T 1epu_A 514 -QQPVSVRYGHWHKDKGQA------------SYKSGPRLIIFVVGGISYSEMRSA 555 (591)
T ss_dssp ---------------------------------CCCCEEEEEEETCBCHHHHHHH
T ss_pred -CCccccccCcccCCCCcc------------ccCCCCeEEEEEECCCCHHHHHHH
Confidence 111334457999765532 124578999999999999997543
No 5
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.6e-100 Score=873.69 Aligned_cols=564 Identities=25% Similarity=0.453 Sum_probs=445.4
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEEecCC
Q 007004 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (622)
Q Consensus 16 ~sL~~~~r~~ll~~~l~~v~~~~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYfi~Pt 95 (622)
++||+++|++|++++| +++++ ++|||||+|+.++++||+||++++|+++||++|+.|+++|+|+|+++|||||+||
T Consensus 2 ~~l~~~~r~~ll~~~l-~v~~~---~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt 77 (650)
T 2xhe_A 2 MSLKSAVKTVLTNSLR-SVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPT 77 (650)
T ss_dssp CCHHHHHHHHHHHHHT-TCCCC---SSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSC
T ss_pred ccHHHHHHHHHHHHHh-ccccC---CCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCC
Confidence 4699999999997799 88632 4699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccCeEEEEecceEecCCCceEecCcchhhhhhCCC
Q 007004 96 KENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 175 (622)
Q Consensus 96 ~~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~~~~~~~~i~~l~e~~ldf~ple~~lfsl~~p~~f~~l~~~~ 175 (622)
.+||++|++||++..|+|+.|||||++.+|+.+++++++. ++.+.|+++.|+++||+|+|+++|||++|++|..+|++.
T Consensus 78 ~~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~ 156 (650)
T 2xhe_A 78 EENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASA-KAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSR 156 (650)
T ss_dssp HHHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHS-GGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTT
T ss_pred HHHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhc-chhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCc
Confidence 9999999999986447999999999999999999999974 578899999999999999999999999999999999743
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhCCCC---CCCCC
Q 007004 176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENF---PQTET 252 (622)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~~L~~~~~~~~~~---p~~~~ 252 (622)
. ....++.+|++|+++|.++|++|.|||+|++ ...|+++|+.++++|.+ ..+++.+ +...+
T Consensus 157 ~----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~-----------~~~a~~la~~l~~~l~~-~~~~~~~~~~~~~~~ 220 (650)
T 2xhe_A 157 S----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTS-----------TPGTERMAMQLQKEIDM-SVSQGLINAREGKLK 220 (650)
T ss_dssp G----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTC-----------CHHHHHHHHHHHHHHHH-HHTTTSCCCCCCSSC
T ss_pred c----chHHHHHHHHHHHHHHHHcCCCCEEEecCCC-----------chHHHHHHHHHHHHHHh-hccCCcccCCCCCCC
Confidence 2 2567999999999999999999999999873 13578899999988876 3333322 33458
Q ss_pred eeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhcCcHHHHHHHHHH
Q 007004 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE 332 (622)
Q Consensus 253 ~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g~~~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~ 332 (622)
++|||+||++|++|||+||||||||+||+|||++|+|+++.+.. ++..++|++.|+++|++|.++||+||++|++.|.+
T Consensus 221 ~~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 299 (650)
T 2xhe_A 221 SQFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKS 299 (650)
T ss_dssp CEEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHH
T ss_pred CEEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987432 23456789999999999999999999999999999
Q ss_pred HHHHHHHHhHHHhhhhcccCCCCCCHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCC
Q 007004 333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (622)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~ 412 (622)
++++|+++++..+.. +.+.++..+++||++||++||+|+++++.+++|++||++|++.+++ +|.+++++||+|++|.+
T Consensus 300 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 377 (650)
T 2xhe_A 300 SFDEFCVSARRLQGL-RDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEE 377 (650)
T ss_dssp HHHHHHHHHHHTTTC-CCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHHhhhhccc-cccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCc
Confidence 999999887632100 0011245689999999999999999999999999999999999999 99999999999999874
Q ss_pred C--------HHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhhHHHHHHHHHhcCcccccCc
Q 007004 413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS 484 (622)
Q Consensus 413 ~--------~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~gi~~~~~~kllq~~gl~~~~~~~i~nL~~lG~~~~k~~~ 484 (622)
. .+.++++|. +++.+..|||||+|||++++ +|++++++++++++||++.+++.+|.||+++|+...+...
T Consensus 378 ~~g~~~~~~~~~i~~ll~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~ 455 (650)
T 2xhe_A 378 QDGNKVRDFIGEVASVVV-DRRVSTEDKLRCLMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRR 455 (650)
T ss_dssp SSCCBCCCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGGC
T ss_pred ccccchhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccc
Confidence 2 245677776 56889999999999999998 5899999999999999999999999999999998764321
Q ss_pred CCCCCCcchhhhhhhhhcccCCCCCccccccccccchHHHHHHHHHcCCCCCCCCCccCCCCCCccccccccccCCCCcc
Q 007004 485 STGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA 564 (622)
Q Consensus 485 ~~~~~~~~f~~~k~~~~~~k~~~~~~~~Y~~Sry~P~i~~ile~~~~~~Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~~ 564 (622)
. ++.+...++++ +.+|++|||+|+++++||++++++|+++.|||+.++++...+.+.+.+.....+.
T Consensus 456 ~----------~~~~~~~rk~~---~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 522 (650)
T 2xhe_A 456 G----------RKPKTMKRIER---DMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDG 522 (650)
T ss_dssp C----------CCCCCCCCCCC---CCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC------------
T ss_pred c----------ccccccccccc---CCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCcccccccccccccccccc
Confidence 0 01111112222 2389999999999999999999999999999998765321111100000000001
Q ss_pred cCccCCCCCCCCCCCCCCCC----CCcccc----cCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004 565 HSMRSRRTPTWARPRNSDDG----YSRCCC----CSSLHRPIGFIICRFIISCTVDLFLLIL 618 (622)
Q Consensus 565 ~s~r~~r~~~W~~~~~~~~~----~~~~~~----~~~~~~~~~~r~ivfv~GG~~~~~~~~~ 618 (622)
.+.++.|.|+|++.+.+... .++.+. ..+....+++|+||||+||+|++|+-.+
T Consensus 523 ~~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al 584 (650)
T 2xhe_A 523 PATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCA 584 (650)
T ss_dssp ---------------------------------------CCCSCEEEEEEEEEECHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHH
Confidence 11234455899986543211 000000 0001135689999999999999998543
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=1.3e-87 Score=769.33 Aligned_cols=543 Identities=18% Similarity=0.273 Sum_probs=409.4
Q ss_pred CchhHHHHHHHHHHHHHHHhccCC-----C----------CCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccC
Q 007004 14 DYKNFKQISRERLLYEMLRSAKTG-----T----------SKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHR 78 (622)
Q Consensus 14 ~~~sL~~~~r~~ll~~~l~~v~~~-----~----------~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~ 78 (622)
...+||+.||+.|+ .||+...++ . ..++|||||+|+.++++||+||++++|+++||++|+.|++
T Consensus 15 ~~~~lr~~q~~~l~-~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~ 93 (671)
T 1mqs_A 15 KDISLRDMQISAIL-KMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQ 93 (671)
T ss_dssp CCCCHHHHHHHHHH-HHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTS
T ss_pred CcccHHHHHHHHHH-HHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccC
Confidence 56789999999999 699876520 1 1467999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhc---CCcccccCeEEEEecceEec
Q 007004 79 RRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKD---STVLPRIGALREMNLEYFAI 155 (622)
Q Consensus 79 ~R~~~~~~~aIYfi~Pt~~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~~---~~~~~~i~~l~e~~ldf~pl 155 (622)
.|+|+|+++|||||+||.+||++|++||++ |+|+.|||||++.+|+.++++|++. .++.+.|+++.|++++|+|+
T Consensus 94 ~r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfipl 171 (671)
T 1mqs_A 94 DRSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVT 171 (671)
T ss_dssp CCCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEEC
T ss_pred CCCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeec
Confidence 999999999999999999999999999984 7999999999999999999999863 57889999999999999999
Q ss_pred CCCceEecCcchhhhhhCCCCcccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHH
Q 007004 156 DSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWN 235 (622)
Q Consensus 156 e~~lfsl~~p~~f~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Iry~~~~~~~~~~~~~~~~~l~~~lA~~v~~ 235 (622)
|+++|||++|++|..+|.+..+.......++.+|++|+++|.++|++|.|||..+. .|+++|+.+++
T Consensus 172 e~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-------------~a~~va~~L~~ 238 (671)
T 1mqs_A 172 EPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-------------PAEIIAEKLGT 238 (671)
T ss_dssp STTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-------------HHHHHHHHHHH
T ss_pred cCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-------------hHHHHHHHHHH
Confidence 99999999999999999976544445578999999999999999999999986542 35677777777
Q ss_pred HHHHhhhhC--CCC------CCCCCeeEEEecCCCCccchhhhhhhhHHHHHhhccccCCeEEEeccCCCC-------CC
Q 007004 236 CLMKYKQSI--ENF------PQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTG-------GP 300 (622)
Q Consensus 236 ~L~~~~~~~--~~~------p~~~~~~LlIlDRs~D~vTPLlh~~TYqami~Dll~I~~~~v~~~~~~~~g-------~~ 300 (622)
++.++.... ..| ++..+++|||+||++|++|||+||||||||+||+|||++|+|+++.+...+ ..
T Consensus 239 ~l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~ 318 (671)
T 1mqs_A 239 KLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKP 318 (671)
T ss_dssp HHHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC--------------
T ss_pred HHHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCcccccccccc
Confidence 776654332 123 223588999999999999999999999999999999999999997642211 11
Q ss_pred CcceeEecCCCChHHHHhhcCcHHHHHHHHHHHHHHHHHHhHHHhhhh--cc------cCCCCCCHHHHHHHHHhccchH
Q 007004 301 PEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQH--SA------RDGGELSTKDLQKMVQALPQYS 372 (622)
Q Consensus 301 ~e~k~~~L~~~D~lw~~~R~~hi~~v~~~l~~~~~~~~~~~~~~~~~~--~~------~~~~~~s~~dl~~~v~~Lp~~~ 372 (622)
.++|++.|+++|++|.++||+||++|++.|.+++++|+++++. +++ +. ++....+++||++||++||+|+
T Consensus 319 ~~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~ 396 (671)
T 1mqs_A 319 LATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAE--ITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELT 396 (671)
T ss_dssp -CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHH--HHHHC--------------------CCCCSCHHHH
T ss_pred ccceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--HhcccCccCcccccccccccHHHHHHHHHHhHHHH
Confidence 4568899999999999999999999999999999999987642 221 00 0122467999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCCCCHHHHHHhhhcCCCCChhhHHHHHHHHHHhCCC-CCCchH
Q 007004 373 DQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPE-KFQGEK 451 (622)
Q Consensus 373 ~~~~~ls~H~~la~~~~~~~~~~~l~~~~~~EQ~la~g~~~~~~l~~~l~~~~~~~~~dkLRLl~Ly~l~~~~-gi~~~~ 451 (622)
++++++++|++||++|++.+++++|.+++++||+|+ |....+.++++|.+....++.|||||+|||++++ + |+++++
T Consensus 397 ~~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~-~~g~~~~~ 474 (671)
T 1mqs_A 397 AKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTS-TTGLPKDF 474 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHC-SSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHc-CCCCCHHH
Confidence 999999999999999999999999999999999997 4433567888997422359999999999999998 5 888877
Q ss_pred ---HHHHHHHcCCChhhHHHHHHHHHhcCcc---c--cc---Cc-C---CCC-CCcchhhhhhhhhcccCCCCCcccccc
Q 007004 452 ---GQNIMKLARLQSDDITAVNNMRLLGGAS---D--IK---KS-S---TGA-FSLKFDINKKKRAVRKDRTGEEQTWQL 515 (622)
Q Consensus 452 ---~~kllq~~gl~~~~~~~i~nL~~lG~~~---~--k~---~~-~---~~~-~~~~f~~~k~~~~~~k~~~~~~~~Y~~ 515 (622)
++++++++|++...+..+.++..++... . +. .+ . .+. |+..+. +-..+.+...+. ......
T Consensus 475 ~~~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~-r~~~~~~~~g~~--~~~~~v 551 (671)
T 1mqs_A 475 VQNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIY-GLTEGKLQGGVG--SLISGI 551 (671)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------C-HHHHHTTTSSCS--SSHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHH-HHHHHHhccchh--hHHHhH
Confidence 4566788999655555555555443211 1 00 00 0 010 222111 000111111110 112223
Q ss_pred cccc-----chHHHHHHHHHcC-----C--CCCCCCCccCCCCCCccccccccccCCCCcccCccCCCCCCCCCCCCCCC
Q 007004 516 SRFY-----PMIEELIEKLGKR-----E--LPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDD 583 (622)
Q Consensus 516 Sry~-----P~i~~ile~~~~~-----~--Ld~~~fP~~~~~~~~~~~~~~~~~~~~~~~~~s~r~~r~~~W~~~~~~~~ 583 (622)
+||. |.+.+++|++++| + |+.+.|||+.++..... .+. | +
T Consensus 552 ~n~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~~~~~--------------~~~-----~-------~-- 603 (671)
T 1mqs_A 552 KKLLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGS--------------HTR-----K-------P-- 603 (671)
T ss_dssp HHTCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSSCS--------------SSC-----C-------C--
T ss_pred HhhCCCcccchHHHHHHHHHhccccccccCCCccCceeeCCCCcCCC--------------CCC-----C-------c--
Confidence 4555 4588999999998 4 88999999974321100 000 0 0
Q ss_pred CCCcccccCCCCCCCCceEEEEEeCCchhhhhhhh
Q 007004 584 GYSRCCCCSSLHRPIGFIICRFIISCTVDLFLLIL 618 (622)
Q Consensus 584 ~~~~~~~~~~~~~~~~~r~ivfv~GG~~~~~~~~~ 618 (622)
.+.+.+++||||+||+|+.|+-.+
T Consensus 604 -----------~~~~~~~viVFvVGG~Ty~E~~~l 627 (671)
T 1mqs_A 604 -----------KRQSYNKSLVFVVGGGNYLEYQNL 627 (671)
T ss_dssp -----------CCCCCSEEEEEEETCBCHHHHHHH
T ss_pred -----------ccCCCCeEEEEEECCccHHHHHHH
Confidence 012468999999999999998543
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.96 E-value=4.2e-30 Score=238.49 Aligned_cols=133 Identities=25% Similarity=0.455 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHHHHHhccCC----CCCCCeEEEEEeccchhHhhhccCcchhcccCceEEecccCCCCCCCCCceEEE
Q 007004 16 KNFKQISRERLLYEMLRSAKTG----TSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYF 91 (622)
Q Consensus 16 ~sL~~~~r~~ll~~~l~~v~~~----~~~~~~KvLVlD~~t~~ils~~~~~~~ll~~gVt~ie~i~~~R~~~~~~~aIYf 91 (622)
.+||+.||++|+ +||+.+.+. ...++|||||+|+.|++|||+||+++||+++|||+||+|+++|+|+|+++||||
T Consensus 20 ~sLr~~qr~~l~-~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYf 98 (159)
T 1y9j_A 20 ASIRERQTVALK-RMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYF 98 (159)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEE
T ss_pred HHHHHHHHHHHH-HHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEE
Confidence 489999999999 699986531 113679999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---cCCcccccCeEEEEecc
Q 007004 92 IQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLE 151 (622)
Q Consensus 92 i~Pt~~~i~~i~~d~~~~~p~Y~~~hi~Ft~~~~~~l~~~l~~---~~~~~~~i~~l~e~~ld 151 (622)
|+||.+||++|++||++ |+|++|||||++.+|+.++++|++ +.+....|+.+.|+++|
T Consensus 99 v~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 99 VMPTEENIDRLCQDLRN--QLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred ecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 99999999999999985 799999999999999999999996 24667777777776654
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.03 E-value=45 Score=22.31 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHhccchHHHhhhHHHHHHHHHH
Q 007004 356 LSTKDLQKMVQALPQYSDQIDKLSLHVEIAGK 387 (622)
Q Consensus 356 ~s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~ 387 (622)
.++++++++++.|.+-..+.+.+.-|+..+..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 47889999999888888888888888877654
No 9
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=20.90 E-value=1.8e+02 Score=20.68 Aligned_cols=31 Identities=32% Similarity=0.439 Sum_probs=15.8
Q ss_pred CHHHHHHHHHhccchHHHhhhHHHHHHHHHHHHHHH
Q 007004 357 STKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKII 392 (622)
Q Consensus 357 s~~dl~~~v~~Lp~~~~~~~~ls~H~~la~~~~~~~ 392 (622)
+..||..+|..| +++...++. ++...++..+
T Consensus 3 ~~~dLt~~vq~L--L~qmq~kFq---~mS~~I~~ri 33 (48)
T 3ci9_A 3 TVQDLTSVVQTL--LQQMQDKFQ---TISDQIIGRI 33 (48)
T ss_dssp CHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 566777777664 233333332 3555555444
No 10
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=15.00 E-value=45 Score=31.30 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=8.5
Q ss_pred EEEeCCchhh
Q 007004 604 RFIISCTVDL 613 (622)
Q Consensus 604 vfv~GG~~~~ 613 (622)
||||||+++-
T Consensus 122 vYIIGGiVD~ 131 (197)
T 4fmw_A 122 AYVIGGLVDH 131 (197)
T ss_dssp EEEEECCCCT
T ss_pred EEEEEEEEeC
Confidence 7999999873
Done!