Your job contains 1 sequence.
>007007
MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISI
NVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSP
SLTDVRVMGRGGLSSQPSSSIPLSSATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSG
MVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQN
QNEPGQFRGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPLGGNKQFSSQQNPLLQQFNS
QGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADVSHLKVE
EPQQPQNLPEESTPESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDL
SPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKL
PQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQN
TYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGW
CQRIKTEFTFEYNYLEDELIV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007007
(621 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2172389 - symbol:AT5G18230 species:3702 "Arabi... 775 1.1e-95 2
DICTYBASE|DDB_G0272056 - symbol:DDB_G0272056 "putative CC... 431 8.2e-48 3
RGD|1304771 - symbol:Cnot3 "CCR4-NOT transcription comple... 426 2.8e-47 3
UNIPROTKB|E1BCS1 - symbol:CNOT3 "Uncharacterized protein"... 426 3.1e-47 3
UNIPROTKB|F6XXD6 - symbol:CNOT3 "Uncharacterized protein"... 426 7.5e-47 3
UNIPROTKB|O75175 - symbol:CNOT3 "CCR4-NOT transcription c... 426 9.5e-47 3
FB|FBgn0033029 - symbol:l(2)NC136 "lethal (2) NC136" spec... 440 1.6e-46 3
MGI|MGI:2385261 - symbol:Cnot3 "CCR4-NOT transcription co... 426 1.9e-46 3
UNIPROTKB|E2R344 - symbol:CNOT3 "Uncharacterized protein"... 412 2.3e-45 3
ZFIN|ZDB-GENE-040927-6 - symbol:cnot3a "CCR4-NOT transcri... 402 1.3e-38 3
ASPGD|ASPL0000074489 - symbol:AN4585 species:162425 "Emer... 389 3.0e-36 2
UNIPROTKB|H0Y5X7 - symbol:CNOT3 "CCR4-NOT transcription c... 340 1.3e-32 2
POMBASE|SPAC1B3.05 - symbol:not3 "CCR4-Not complex subuni... 355 6.8e-31 2
WB|WBGene00003826 - symbol:ntl-3 species:6239 "Caenorhabd... 328 1.8e-30 2
UNIPROTKB|G5EFX8 - symbol:ntl-3 "Protein NTL-3, isoform a... 328 1.8e-30 2
ZFIN|ZDB-GENE-030131-5838 - symbol:cnot3b "CCR4-NOT trans... 235 2.3e-20 3
UNIPROTKB|H7C5J4 - symbol:CNOT3 "CCR4-NOT transcription c... 195 1.4e-14 1
UNIPROTKB|F1RNH3 - symbol:CNOT3 "Uncharacterized protein"... 169 4.1e-12 2
CGD|CAL0005191 - symbol:orf19.6075 species:5476 "Candida ... 157 1.8e-10 1
UNIPROTKB|F1MID5 - symbol:CNOT2 "Uncharacterized protein"... 153 2.0e-09 2
UNIPROTKB|F1M3V0 - symbol:Cnot2 "Protein Cnot2" species:1... 153 2.7e-09 3
UNIPROTKB|F1SH40 - symbol:CNOT2 "Uncharacterized protein"... 154 2.7e-09 2
MGI|MGI:1919318 - symbol:Cnot2 "CCR4-NOT transcription co... 153 3.5e-09 2
UNIPROTKB|E2QSF5 - symbol:CNOT2 "Uncharacterized protein"... 153 3.5e-09 2
UNIPROTKB|Q9NZN8 - symbol:CNOT2 "CCR4-NOT transcription c... 153 3.5e-09 2
UNIPROTKB|F1LUT7 - symbol:Cnot2 "Protein Cnot2" species:1... 153 3.7e-09 2
UNIPROTKB|F1LY92 - symbol:Cnot2 "Protein Cnot2" species:1... 153 3.9e-09 3
SGD|S000002324 - symbol:CDC36 "Component of the CCR4-NOT ... 143 5.7e-09 1
UNIPROTKB|H0YHT6 - symbol:CNOT2 "CCR4-NOT transcription c... 142 7.3e-09 1
UNIPROTKB|F8VV52 - symbol:CNOT2 "CCR4-NOT transcription c... 153 7.7e-09 3
UNIPROTKB|E1BCE7 - symbol:CNOT2 "Uncharacterized protein"... 153 8.3e-09 3
ZFIN|ZDB-GENE-070410-70 - symbol:zgc:162316 "zgc:162316" ... 162 1.1e-08 2
UNIPROTKB|Q5ZKI3 - symbol:CNOT2 "Uncharacterized protein"... 153 1.4e-08 3
RGD|1311672 - symbol:Cnot2 "CCR4-NOT transcription comple... 142 2.3e-08 3
UNIPROTKB|Q52JK6 - symbol:VIP2 "Probable NOT transcriptio... 154 1.7e-07 2
CGD|CAL0002492 - symbol:NOT5 species:5476 "Candida albica... 134 4.6e-07 2
UNIPROTKB|Q5A755 - symbol:NOT5 "Potential mRNA deadenylas... 134 4.6e-07 2
TAIR|locus:505006107 - symbol:NOT2a "Negative on TATA les... 134 1.7e-06 3
FB|FBgn0017550 - symbol:Rga "Regena" species:7227 "Drosop... 109 6.1e-06 2
TAIR|locus:2174259 - symbol:VIP2 "VIRE2 interacting prote... 132 8.3e-06 2
DICTYBASE|DDB_G0284577 - symbol:DDB_G0284577 "putative CC... 122 1.3e-05 2
POMBASE|SPCC4G3.15c - symbol:not2 "CCR4-Not complex subun... 129 2.4e-05 1
SGD|S000006276 - symbol:NOT5 "Component of the CCR4-NOT t... 123 0.00019 2
WB|WBGene00019273 - symbol:H43E16.1 species:6239 "Caenorh... 128 0.00024 1
WB|WBGene00003825 - symbol:ntl-2 species:6239 "Caenorhabd... 120 0.00047 1
UNIPROTKB|Q10923 - symbol:ntl-2 "Protein NTL-2, isoform a... 120 0.00047 1
>TAIR|locus:2172389 [details] [associations]
symbol:AT5G18230 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
EMBL:CP002688 GO:GO:0006355 KO:K12580 OMA:ESIYHLP IPI:IPI00939040
RefSeq:NP_001154716.1 UniGene:At.7555 ProteinModelPortal:F4JWJ7
PRIDE:F4JWJ7 EnsemblPlants:AT5G18230.2 GeneID:831941
KEGG:ath:AT5G18230 Uniprot:F4JWJ7
Length = 845
Score = 775 (277.9 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
Identities = 156/289 (53%), Positives = 189/289 (65%)
Query: 335 IHQQSSQQTLMSGGQKD-ADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLK 393
+ QQS+ + G Q ADV H++ K + EDD K
Sbjct: 570 LQQQSNAMSQQLGQQPSVADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSK 623
Query: 394 APYAIDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGDSL 453
+ D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 624 VLF--DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDP- 680
Query: 454 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS 513
+ V G MHDQM+N+QMLE+AFYK PQP DSER R Y PR+PA+TP ++PQ QAPI++
Sbjct: 681 --SAV--GPMHDQMHNLQMLEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIIN 736
Query: 514 NPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPK 573
NP WERL D+YGTDTLFFAFYYQQN+YQQYLAAKELKKQSWRYHRK+NTWFQRH+EPK
Sbjct: 737 NPLLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPK 796
Query: 574 VANDEFEQGTYVYFDFHIANDDLQHG-WCQRIKTEFTFEYNYLEDELIV 621
+A DE+EQG YVYFDF D+ Q G WCQRIK EFTFEY+YLEDEL+V
Sbjct: 797 IATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELVV 845
Score = 523 (189.2 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 148/354 (41%), Positives = 184/354 (51%)
Query: 104 STKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSD 163
+ KEED P R+ S+ D + G G + +P+NG+ + ++
Sbjct: 357 AAKEEDATTLPSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISATSAAE 415
Query: 164 VAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRV 223
VAKRNI+G E VQ L SPLS +M+L AKGNDGT S DSN G+ A GR
Sbjct: 416 VAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTAS-DSN-PGDVAASIGRA 466
Query: 224 FTPSM--GMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPL 281
F+PS+ G QWR G+ FQ+QNE RGRTEIAPDQREKF GH NLLG+P
Sbjct: 467 FSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQREKFLQRLQQVQQ-GHGNLLGIPS 523
Query: 282 --GGN-KQFSSQQ-NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQ 337
GGN KQFSSQQ NPLLQQ SSIS LG+GVQAPG N ++SASLQQQ N + Q
Sbjct: 524 LSGGNEKQFSSQQQNPLLQQ----SSSISPHGSLGIGVQAPGFNVMSSASLQQQSNAMSQ 579
Query: 338 QSSQQTLMSGGQKDADVSHLKVXXXXXXXXXXXXXXXXXXXXXGLGKNLIHEDDLKAPYA 397
Q QQ + ADV H++ K + EDD K +
Sbjct: 580 QLGQQPSV------ADVDHVR------NDDQSQQNLPDDSASIAASKAIQSEDDSKVLF- 626
Query: 398 IDSSTGVSASLTEPAQVVRDTDXXXXXXXXXXXXXXXXXVIGRRSVSDLGAIGD 451
D+ +G+ + + +P QV D VIGRRS S+LGAIGD
Sbjct: 627 -DTPSGMPSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGD 679
Score = 196 (74.1 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
Identities = 69/239 (28%), Positives = 113/239 (47%)
Query: 1 MPATVISTHQQVTSV------QEQGEDTASQDSNSDVAARTPPAKS-SGVGSTASTPAVG 53
M +++ ++ QV S+ QE+ EDT+ DS++++ +TPP K+ +G+ S STPA G
Sbjct: 260 MKSSLAASASQVRSISLPTHHQEKTEDTSLPDSSAEMVPKTPPPKNGAGLHSAPSTPAGG 319
Query: 54 PATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNF 113
P S+NVPA N SNTS L S + ++ G +S PV + KEED
Sbjct: 320 --RP-SLNVPA---GNVSNTSVTLSTSIPTQTSIESMGSLS---PV----AAKEEDATTL 366
Query: 114 PGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAE 173
P R+ S+ D + G G + +P+NG+ + ++VAKRNI+G E
Sbjct: 367 PSRKPPSSVADTPLRGIG-RVGIPNQPQPSQPPSPIPANGSRISATSAAEVAKRNIMGVE 425
Query: 174 ERLGS-SGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQ 231
+ + + +V P + + A+ N G + A ++G + P Q
Sbjct: 426 SNVQPLTSPLSKMVLPPTAKGNDGTASDSNPGDVAASIGRAFSPSIVSGSQWRPGSPFQ 484
>DICTYBASE|DDB_G0272056 [details] [associations]
symbol:DDB_G0272056 "putative CCR4-NOT complex
subunit 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007207
InterPro:IPR007282 InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153
PIRSF:PIRSF005290 dictyBase:DDB_G0272056 GO:GO:0005634
GO:GO:0006355 EMBL:AAFI02000007 eggNOG:COG5665 KO:K12580
RefSeq:XP_645358.1 ProteinModelPortal:Q55AA8
EnsemblProtists:DDB0219997 GeneID:8618247 KEGG:ddi:DDB_G0272056
InParanoid:Q55AA8 OMA:GHIKSEE Uniprot:Q55AA8
Length = 866
Score = 431 (156.8 bits), Expect = 8.2e-48, Sum P(3) = 8.2e-48
Identities = 83/157 (52%), Positives = 104/157 (66%)
Query: 462 GMHDQMY-NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER 520
G + M M++ +F LP KD ER ++IPR+P P YPQ P+ +P +E+
Sbjct: 722 GFEEAMILTRHMMDISFKNLPDFKDYERIPTFIPRNPKPVPQYYPQSTLPLFESPNVFEK 781
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFE 580
+D TLFF FY++Q TYQQY AAKELKKQ WRYH+KY TWF+RHEEPK +EFE
Sbjct: 782 FDID-----TLFFIFYFKQGTYQQYQAAKELKKQGWRYHKKYLTWFRRHEEPKEITNEFE 836
Query: 581 QGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
QGTYVYFD+ + GWCQR KTEFTFEY +LE+
Sbjct: 837 QGTYVYFDY-------ETGWCQRKKTEFTFEYRFLEE 866
Score = 62 (26.9 bits), Expect = 8.2e-48, Sum P(3) = 8.2e-48
Identities = 23/89 (25%), Positives = 38/89 (42%)
Query: 28 NSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTL-SNASNTSPVLPGSSSVRGV 86
++ + + P S + +T +G TP + N+ QT + AS SP SS +
Sbjct: 316 STSIQQQLPQPNKSPILQPNNTARIGSPTPTT-NLSQQTQPTKASTPSPTF--SSVTKTS 372
Query: 87 FDNTGPISSSPPVNLTSSTKE-EDVGNFP 114
N S S P +T ++ +GN P
Sbjct: 373 IKNDNKQSHSQPTPVTIPNQQFPSLGNVP 401
Score = 61 (26.5 bits), Expect = 8.2e-48, Sum P(3) = 8.2e-48
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 284 NKQFSSQQN-PLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 342
N+QF S N P+ Q+ Q + A A L Q QQQ QQ QQ
Sbjct: 391 NQQFPSLGNVPMAQRLMQQQAQQQAAAAAQLAAQQAQTQQTQQQQQQQQQQQQQQQQQQQ 450
Score = 58 (25.5 bits), Expect = 2.2e-47, Sum P(3) = 2.2e-47
Identities = 31/110 (28%), Positives = 48/110 (43%)
Query: 17 EQGEDTASQDSNS---DVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNT 73
+ E ++ +DSNS D TP ++ TA+ A PI I+ Q N
Sbjct: 274 DDDESSSKKDSNSENEDEIKETPKVATA----TATATAEKSTQPI-ISTSIQQQLPQPNK 328
Query: 74 SPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLT 123
SP+L +++ R G S +P NL+ T+ P + S+PS T
Sbjct: 329 SPILQPNNTAR-----IG--SPTPTTNLSQQTQ-------PTKASTPSPT 364
Score = 49 (22.3 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 329 QQQPNPIHQQSSQQTLMSGGQKDADVSH 356
QQQ HQQS QQ+ Q+ H
Sbjct: 577 QQQQQQSHQQSHQQSHQQSQQQSQQSQH 604
Score = 45 (20.9 bits), Expect = 3.8e-46, Sum P(3) = 3.8e-46
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 290 QQNPLLQQF-NSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 342
QQ P QQ N+Q + + Q+ + VQ +S++ +++QQ P Q QQ
Sbjct: 467 QQAPQQQQQQNTQFKNKTGQSDIN-DVQ----DSLSQLNIKQQQQPPQQPQQQQ 515
Score = 41 (19.5 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 327 SLQQQPNPIHQQSSQQTLMS 346
S QQ HQQS QQ+ S
Sbjct: 583 SHQQSHQQSHQQSQQQSQQS 602
Score = 40 (19.1 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 329 QQQPNPIHQQSSQQTLMSGGQKDADVSHLK 358
QQQ QQ QQ Q AD+ K
Sbjct: 512 QQQQQQQQQQQQQQQQQQQQQPQADLDDSK 541
Score = 39 (18.8 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 329 QQQPNPIHQQSSQQ 342
Q Q P HQQ S Q
Sbjct: 664 QPQHQPYHQQQSYQ 677
Score = 39 (18.8 bits), Expect = 4.2e-45, Sum P(3) = 4.2e-45
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 317 APGMNSVTSASLQQQPNPIHQQSSQQTL 344
+P +SVT S++ H Q + T+
Sbjct: 362 SPTFSSVTKTSIKNDNKQSHSQPTPVTI 389
>RGD|1304771 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
RGD:1304771 GO:GO:0005634 GO:GO:0006355 GO:GO:0000932 CTD:4849
KO:K12580 OrthoDB:EOG41JZDJ OMA:ESIYHLP EMBL:AC103574 EMBL:AC126217
IPI:IPI00192709 RefSeq:NP_001100941.2 UniGene:Rn.212216
Ensembl:ENSRNOT00000064411 GeneID:308311 KEGG:rno:308311
UCSC:RGD:1304771 NextBio:658574 ArrayExpress:D3ZXE8 Uniprot:D3ZXE8
Length = 751
Score = 426 (155.0 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 80 (33.2 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
Identities = 32/90 (35%), Positives = 46/90 (51%)
Query: 27 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 84
S S V A +P A SS GS+AS+ A+GP + P+ TL +S +P G+ SV
Sbjct: 426 SYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPAPS-TLKESSTAAP--SGAGSVA 482
Query: 85 -GVFDNTG------PISSSPPVNLTSSTKE 107
G +N+G P+ +PP + T S E
Sbjct: 483 SGSGNNSGGPSLLVPLPVNPPSSPTPSFSE 512
Score = 60 (26.2 bits), Expect = 3.4e-45, Sum P(3) = 3.4e-45
Identities = 53/218 (24%), Positives = 76/218 (34%)
Query: 17 EQGEDTASQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASN 72
E ED + ++D PAK S V S +PAV P P S PA ++A +
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---TSALS 335
Query: 73 TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-- 130
++P G+S+ GP +S P + + + P S PS R
Sbjct: 336 STPGNNGASTPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQP 395
Query: 131 -----GGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL 185
GG A NG +V+D L + GSS Q+L
Sbjct: 396 SGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVALSSSG--GSSASSQAL 453
Query: 186 VSPLSN------RMILSQAAKGNDGTGSIDS---NNAG 214
P S + + G GS+ S NN+G
Sbjct: 454 -GPTSGPHNPAPSTLKESSTAAPSGAGSVASGSGNNSG 490
Score = 37 (18.1 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 318
G L G QFS+ + S S++ +A + G++ P
Sbjct: 517 GTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDP 557
>UNIPROTKB|E1BCS1 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:DAAA02047818
IPI:IPI00685943 RefSeq:XP_002695478.1 Ensembl:ENSBTAT00000019836
GeneID:527305 KEGG:bta:527305 NextBio:20874556 Uniprot:E1BCS1
Length = 744
Score = 426 (155.0 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 601 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 658
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 659 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 715
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 716 IYFDYE--------KWGQRKKEGFTFEYRYLED 740
Score = 79 (32.9 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 27 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV-----LPG 79
S S V A +P A SS GS+ + A+GP P N P T S T+PV PG
Sbjct: 419 SYSSVVADSPAEAALSSTGGSSTGSQALGPP-PGPHNPPPSTAKEPSATAPVGAGGVAPG 477
Query: 80 SSSVRGVFDNTGPISSSPPVNLTSSTKE 107
S + G P+ +PP + T S E
Sbjct: 478 SGNNAGGPSLLVPLPVNPPSSPTPSFSE 505
Score = 58 (25.5 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 25/86 (29%), Positives = 35/86 (40%)
Query: 17 EQGEDTASQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNA-- 70
E ED + ++D PAK S V S+ +PAV P+ P A LS
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSSQHPQSPAVPPSYPPGPPPAASALSATPG 339
Query: 71 SNTSPVLPGSSSVRGVFDNTGPISSS 96
SN +P +S G + P S+
Sbjct: 340 SNGAPAAAAPASALGAKASPAPSHSA 365
Score = 43 (20.2 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 306 SAQAGLGLGVQAPGM-NSVTSASLQQQPNPIHQQSS 340
SA A +G G APG N+ SL P P++ SS
Sbjct: 464 SATAPVGAGGVAPGSGNNAGGPSLLV-PLPVNPPSS 498
Score = 37 (18.1 bits), Expect = 3.1e-47, Sum P(3) = 3.1e-47
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 318
G L G QFS+ + S S++ +A + G++ P
Sbjct: 510 GSLLNGPPQFSAAPEIKAPEPLSSLKSMAERAAISSGIEDP 550
>UNIPROTKB|F6XXD6 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 CTD:4849 KO:K12580 GeneTree:ENSGT00390000014743
OMA:ESIYHLP EMBL:AAEX03000741 Ensembl:ENSCAFT00000004262
RefSeq:XP_541428.3 GeneID:484312 KEGG:cfa:484312 Uniprot:F6XXD6
Length = 753
Score = 426 (155.0 bits), Expect = 7.5e-47, Sum P(3) = 7.5e-47
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 76 (31.8 bits), Expect = 7.5e-47, Sum P(3) = 7.5e-47
Identities = 31/88 (35%), Positives = 40/88 (45%)
Query: 27 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 79
S S V A +P A SS GS AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPG 486
Query: 80 SSSVRGVFDNTGPISSSPPVNLTSSTKE 107
S + G P+ +PP + T S E
Sbjct: 487 SGNNTGGPSLLVPLPVNPPSSPTPSFSE 514
Score = 62 (26.9 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 40/180 (22%), Positives = 59/180 (32%)
Query: 17 EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV 76
E ED + ++D PAK+ ++ PA P S ++A +T+P
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPPGPPPATSALSTTPG 339
Query: 77 LPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR---VMGRGGX 133
G+S+ GP +S P + + + P S S T R V GG
Sbjct: 340 NNGASTPAAPTSALGPKASPAPSHSSGTPAPYAQAVAPPAPSGSSTTQPRPPSVQPGGGG 399
Query: 134 XXXXXXXXXXXXATAVPSNG---NLGAVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLS 190
+ + G GA S VA A G SG + P S
Sbjct: 400 GSGGGGSGGSGSSNSSGGGGAGKQNGATSYSSVVADSPAEVALSSSGGSGASSQALGPPS 459
Score = 48 (22.0 bits), Expect = 1.5e-46, Sum P(3) = 1.5e-46
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 288 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 340
S NP S+ S +A AG G GV APG + T P P++ SS
Sbjct: 459 SGPHNP--PPSTSKEPSAAAPAGAG-GV-APGSGNNTGGPSLLVPLPVNPPSS 507
Score = 37 (18.1 bits), Expect = 7.5e-47, Sum P(3) = 7.5e-47
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 318
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>UNIPROTKB|O75175 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS]
[GO:2000036 "regulation of stem cell maintenance" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 GO:GO:0000932
GO:GO:0000289 EMBL:AF180474 EMBL:AB014591 EMBL:AL133647
EMBL:BC016474 IPI:IPI00005015 IPI:IPI00186188 IPI:IPI00478453
PIR:T43456 RefSeq:NP_055331.1 UniGene:Hs.343571
ProteinModelPortal:O75175 DIP:DIP-40297N IntAct:O75175
MINT:MINT-1439009 STRING:O75175 PhosphoSite:O75175 PaxDb:O75175
PRIDE:O75175 Ensembl:ENST00000221232 Ensembl:ENST00000358389
Ensembl:ENST00000406403 Ensembl:ENST00000570333
Ensembl:ENST00000570863 Ensembl:ENST00000570970
Ensembl:ENST00000570997 Ensembl:ENST00000571055
Ensembl:ENST00000571119 Ensembl:ENST00000572058
Ensembl:ENST00000572589 Ensembl:ENST00000572598
Ensembl:ENST00000572852 Ensembl:ENST00000573388
Ensembl:ENST00000573528 Ensembl:ENST00000573769
Ensembl:ENST00000574556 Ensembl:ENST00000574815
Ensembl:ENST00000574965 Ensembl:ENST00000575585
Ensembl:ENST00000576314 Ensembl:ENST00000576558
Ensembl:ENST00000576765 Ensembl:ENST00000577005 GeneID:4849
KEGG:hsa:4849 UCSC:uc002qdj.2 CTD:4849 GeneCards:GC19P054641
HGNC:HGNC:7879 HPA:HPA006408 MIM:604910 neXtProt:NX_O75175
PharmGKB:PA26674 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 InParanoid:O75175 KO:K12580 OMA:IFYYLEP
OrthoDB:EOG41JZDJ PhylomeDB:O75175 GenomeRNAi:4849 NextBio:18674
ArrayExpress:O75175 Bgee:O75175 CleanEx:HS_CNOT3
Genevestigator:O75175 GermOnline:ENSG00000088038 Uniprot:O75175
Length = 753
Score = 426 (155.0 bits), Expect = 9.5e-47, Sum P(3) = 9.5e-47
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDYE--------KWGQRKKEGFTFEYRYLED 749
Score = 72 (30.4 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 29/85 (34%), Positives = 39/85 (45%)
Query: 27 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 79
S S V A +P A SS G+ AS+ A+GP + N P T S +P V PG
Sbjct: 428 SYSSVVADSPAEVALSSSGGNNASSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 486
Query: 80 SSSVRGVFDNTGPISSSPPVNLTSS 104
S + G P+ +PP + T S
Sbjct: 487 SGNNSGGPSLLVPLPVNPPSSPTPS 511
Score = 64 (27.6 bits), Expect = 9.5e-47, Sum P(3) = 9.5e-47
Identities = 45/173 (26%), Positives = 62/173 (35%)
Query: 17 EQGEDTASQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASN 72
E ED + ++D PAK S V S +PAV P P S PA ++A +
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYP-SGPPPA---ASALS 335
Query: 73 TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD-----VRV 127
T+P G + GP +S P + + + P S PS T V+
Sbjct: 336 TTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQP 395
Query: 128 MGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSG 180
G GG ++A G S V + AE L SSG
Sbjct: 396 SGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADS--PAEVALSSSG 446
Score = 48 (22.0 bits), Expect = 9.5e-47, Sum P(3) = 9.5e-47
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 282 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 338
GGN S P N S SA A G G APG + + P P++
Sbjct: 446 GGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 505
Query: 339 SS 340
SS
Sbjct: 506 SS 507
Score = 44 (20.5 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 23/98 (23%), Positives = 33/98 (33%)
Query: 3 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 62
+ V + +V G + +SQ PP +S S A+ G P S N
Sbjct: 431 SVVADSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNN 490
Query: 63 PAQTLSNASNTSPVLPGSSSVRGVFDN--TGPISSSPP 98
+ PV P SS D G + + PP
Sbjct: 491 SGGP--SLLVPLPVNPPSSPTPSFSDAKAAGALLNGPP 526
Score = 37 (18.1 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 318
G L G QFS+ + S S++ +A + G++ P
Sbjct: 519 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 559
>FB|FBgn0033029 [details] [associations]
symbol:l(2)NC136 "lethal (2) NC136" species:7227 "Drosophila
melanogaster" [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 EMBL:AE013599
GO:GO:0005634 GO:GO:0005737 GO:GO:0022008 GO:GO:0006355
GO:GO:0030014 GO:GO:0000289 eggNOG:COG5665 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AY069428
EMBL:BT083390 RefSeq:NP_610176.1 UniGene:Dm.2133 IntAct:Q7K126
STRING:Q7K126 EnsemblMetazoa:FBtr0086062 EnsemblMetazoa:FBtr0331970
GeneID:35501 KEGG:dme:Dmel_CG8426 UCSC:CG8426-RA
FlyBase:FBgn0033029 InParanoid:Q7K126 OrthoDB:EOG4NVX23
ChiTaRS:l(2)NC136 GenomeRNAi:35501 NextBio:793729 Uniprot:Q7K126
Length = 844
Score = 440 (159.9 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
Identities = 84/153 (54%), Positives = 104/153 (67%)
Query: 466 QMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDS 525
QM QM+E+A+Y LPQP D+E+ ++Y R P +TP YPQ Q PI F++RLS
Sbjct: 703 QM-QFQMMEAAYYHLPQPMDTEKLQTYFHRAPVLTPSHYPQAQMPIYDTVEFYQRLS--- 758
Query: 526 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYV 585
T+TLFF FYY + + QYLAAK LKKQSWR+H KY WFQRHEEPK+ ND++EQGTY+
Sbjct: 759 --TETLFFVFYYMEGSKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINDDYEQGTYI 816
Query: 586 YFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 618
YFD+ W QR K FTFEY YLED+
Sbjct: 817 YFDYE--------KWSQRKKEGFTFEYKYLEDK 841
Score = 63 (27.2 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
Identities = 46/215 (21%), Positives = 83/215 (38%)
Query: 22 TASQDSN-SDVAARTPPAKSSGVGSTASTPA-VGPATPISINVPAQTLSNASNTSPVLPG 79
TA+ DSN S+ + +P + +SG GS + +P V S A + S+A++ +
Sbjct: 244 TATTDSNNSNETSGSPSSVTSG-GSPSQSPVTVQQILNTSSQGAASSGSSAASAALFQQQ 302
Query: 80 SSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR-VMGRGGXXXXXX 138
++ + +N G S + + +++T + G L D R
Sbjct: 303 LTAAQSNGNNVGYASDTSAASSSATTSTDPAGGTVAVNCVGGLADKRNKSSESNALKLKP 362
Query: 139 XXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGA-----EERLGSSGMVQSLVSPLSNRM 193
T V + L PL SD I+ + +++L ++ + + + S
Sbjct: 363 QPHQLIKPTPVRATAKL---PLSSDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSS 419
Query: 194 ILSQAAKGNDGTGSIDS--NNAGETVAMAGRVFTP 226
I S ++ G G S NN G A+ TP
Sbjct: 420 IGSCSSTGGTGASQSASSGNNPGNNPAVQPNAPTP 454
Score = 57 (25.1 bits), Expect = 6.9e-46, Sum P(3) = 6.9e-46
Identities = 35/153 (22%), Positives = 58/153 (37%)
Query: 10 QQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSN 69
QQ+T+ Q G + S++ A+ + + G T + VG N ++ SN
Sbjct: 301 QQLTAAQSNGNNVGYA-SDTSAASSSATTSTDPAGGTVAVNCVGGLAD-KRNKSSE--SN 356
Query: 70 ASNTSPV---LPGSSSVRGVFDNTGPISSSPPVN-LTSSTKEEDVGNFPGRRSSPSLTDV 125
A P L + VR P+SS VN + SST ++ P S + + +
Sbjct: 357 ALKLKPQPHQLIKPTPVRATAKL--PLSSDTQVNKIVSSTPSKNQQQLPTAASIVATSAM 414
Query: 126 RVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAV 158
+ G A++ + GN AV
Sbjct: 415 QSQSSIGSCSSTGGTGASQSASSGNNPGNNPAV 447
Score = 51 (23.0 bits), Expect = 2.9e-45, Sum P(3) = 2.9e-45
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 13 TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPIS-INVPAQTLSNAS 71
T + + +N V P SG+ + A++ V AT +S NV Q++ +
Sbjct: 429 TGASQSASSGNNPGNNPAVQPNAPTPGQSGIAAAAASTNVVSATIVSSANVQGQSVIQPT 488
Query: 72 NTSPVLPGSSSVRGVFDNTGPI 93
T + + +N GP+
Sbjct: 489 PTIAFAAVAKHNTSLLEN-GPV 509
Score = 49 (22.3 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 7 STHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 61
+ QQ+TS Q+Q Q N+ +AA T + GS A PIS N
Sbjct: 618 TNQQQLTSQQQQ------QLQNNSLAATTGSNNGTSTGSGLMNVANATGQPISGN 666
Score = 44 (20.5 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 204 GTGSIDSNNAGET 216
GT + DSNN+ ET
Sbjct: 243 GTATTDSNNSNET 255
Score = 37 (18.1 bits), Expect = 1.6e-46, Sum P(3) = 1.6e-46
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 285 KQFSSQQNPLLQQFNSQGSSISAQ 308
+Q SQ++ LLQ FNS+ ++ Q
Sbjct: 600 RQPQSQKS-LLQHFNSETNTNQQQ 622
>MGI|MGI:2385261 [details] [associations]
symbol:Cnot3 "CCR4-NOT transcription complex, subunit 3"
species:10090 "Mus musculus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT
complex" evidence=ISO] [GO:2000036 "regulation of stem cell
maintenance" evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
MGI:MGI:2385261 GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 CTD:4849 eggNOG:COG5665 HOGENOM:HOG000184850
HOVERGEN:HBG051042 KO:K12580 OrthoDB:EOG41JZDJ EMBL:BC030332
EMBL:BC053437 EMBL:BC141041 IPI:IPI00169667 RefSeq:NP_666288.1
UniGene:Mm.358731 ProteinModelPortal:Q8K0V4 DIP:DIP-46844N
IntAct:Q8K0V4 STRING:Q8K0V4 PhosphoSite:Q8K0V4 PaxDb:Q8K0V4
PRIDE:Q8K0V4 Ensembl:ENSMUST00000038913 GeneID:232791
KEGG:mmu:232791 UCSC:uc009evl.2 GeneTree:ENSGT00390000014743
InParanoid:B2RUA7 OMA:ESIYHLP NextBio:381230 Bgee:Q8K0V4
CleanEx:MM_CNOT3 Genevestigator:Q8K0V4
GermOnline:ENSMUSG00000035632 Uniprot:Q8K0V4
Length = 751
Score = 426 (155.0 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 83/153 (54%), Positives = 100/153 (65%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDYE--------KWGQRKKEGFTFEYRYLED 747
Score = 72 (30.4 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 27 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVR 84
S S V A +P SS GS+AS+ A+GP + + PA + S S+T+ +
Sbjct: 426 SYSSVVADSPAEVTLSSSGGSSASSQALGPTS--GPHNPAPSTSKESSTAAPSGAGNVAS 483
Query: 85 GVFDNTG------PISSSPPVNLTSSTKE 107
G +N+G P+ +PP + T S E
Sbjct: 484 GSGNNSGGPSLLVPLPVNPPSSPTPSFSE 512
Score = 65 (27.9 bits), Expect = 1.0e-45, Sum P(3) = 1.0e-45
Identities = 52/217 (23%), Positives = 73/217 (33%)
Query: 17 EQGEDTASQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASN 72
E ED + ++D PAK S V S +PAV P P P T S S+
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSG---PPPTTSALSS 336
Query: 73 TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGR-- 130
T P G+S+ GP +S P + + + P S PS R
Sbjct: 337 T-PGNNGASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQP 395
Query: 131 -----GGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL 185
GG A NG +V+D L + GSS Q+L
Sbjct: 396 SGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSG--GSSASSQAL 453
Query: 186 --------VSPLSNRMILSQAAKGNDGTGSIDSNNAG 214
+P +++ + A G S NN+G
Sbjct: 454 GPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSG 490
Score = 40 (19.1 bits), Expect = 4.1e-43, Sum P(3) = 4.1e-43
Identities = 24/103 (23%), Positives = 37/103 (35%)
Query: 3 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 62
+ V + +VT G +SQ P +S STA+ G NV
Sbjct: 429 SVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKESSTAAPSGAG-------NV 481
Query: 63 PAQTLSNASNTS-----PVLPGSSSVRGVFDN--TGPISSSPP 98
+ + +N+ S PV P SS + G + + PP
Sbjct: 482 ASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLLNGPP 524
Score = 37 (18.1 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 318
G L G QFS+ + S S++ +A + G++ P
Sbjct: 517 GTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDP 557
>UNIPROTKB|E2R344 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 Ensembl:ENSCAFT00000004262 Uniprot:E2R344
Length = 710
Score = 412 (150.1 bits), Expect = 2.3e-45, Sum P(3) = 2.3e-45
Identities = 82/153 (53%), Positives = 100/153 (65%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R++ PR+P TPP + Q+ P F++RLS
Sbjct: 568 EQLYQQAMEEAAWHHMPHPSDSERIRTF-PRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 624
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 625 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 681
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 682 IYFDYE--------KWGQRKKEGFTFEYRYLED 706
Score = 74 (31.1 bits), Expect = 2.3e-45, Sum P(3) = 2.3e-45
Identities = 30/86 (34%), Positives = 39/86 (45%)
Query: 29 SDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPGSS 81
S V A +P A SS GS AS+ A+GP + N P T S +P V PGS
Sbjct: 388 SSVVADSPAEVALSSSGGSGASSQALGPPSGPH-NPPPSTSKEPSAAAPAGAGGVAPGSG 446
Query: 82 SVRGVFDNTGPISSSPPVNLTSSTKE 107
+ G P+ +PP + T S E
Sbjct: 447 NNTGGPSLLVPLPVNPPSSPTPSFSE 472
Score = 59 (25.8 bits), Expect = 4.6e-45, Sum P(3) = 4.6e-45
Identities = 40/146 (27%), Positives = 52/146 (35%)
Query: 201 GNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNEPGQFR------GRTEIA 254
GN+G S A T A+A R P G RT + G F G + +
Sbjct: 339 GNNGA----STPAAPTSALANRTAPPVSG---RTAGGWGGLGLAGSFHSLFPPPGYSSVV 391
Query: 255 PDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLG 314
D + S LG P G + NP S+ S +A AG G G
Sbjct: 392 ADSPAEVALSSSGGSGAS-SQALGPPSGPH-------NP--PPSTSKEPSAAAPAGAG-G 440
Query: 315 VQAPGMNSVTSASLQQQPNPIHQQSS 340
V APG + T P P++ SS
Sbjct: 441 V-APGSGNNTGGPSLLVPLPVNPPSS 465
Score = 49 (22.3 bits), Expect = 4.6e-45, Sum P(3) = 4.6e-45
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 17 EQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPV 76
E ED + ++D PAK+ ++ PA P S ++A +T+P
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPALPPSYPPGPPPATSALSTTPG 339
Query: 77 LPGSSS 82
G+S+
Sbjct: 340 NNGAST 345
Score = 43 (20.2 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 36 PPAKSSGVGSTASTPAV-GPATPISINVPAQTLSNASNTSPVLPGSSS 82
PP + ++TP G +TP + P L+N T+P + G ++
Sbjct: 324 PPGPPPATSALSTTPGNNGASTPAA---PTSALAN--RTAPPVSGRTA 366
Score = 37 (18.1 bits), Expect = 2.3e-45, Sum P(3) = 2.3e-45
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 318
G L G QFS+ + S S++ +A + G++ P
Sbjct: 477 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 517
>ZFIN|ZDB-GENE-040927-6 [details] [associations]
symbol:cnot3a "CCR4-NOT transcription complex,
subunit 3a" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-040927-6 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000014743 EMBL:CR854927 IPI:IPI00996653
Ensembl:ENSDART00000137699 ArrayExpress:E9QGK5 Bgee:E9QGK5
Uniprot:E9QGK5
Length = 901
Score = 402 (146.6 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 80/153 (52%), Positives = 98/153 (64%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A+ +P P DSER R Y+ R+P TPP + Q+ + F++RLS
Sbjct: 758 EQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPPFHHQMPPHHSDSIEFYQRLS-- 815
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYL+AK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 816 ---TETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 872
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 873 IYFDYE--------KWGQRKKEGFTFEYRYLED 897
Score = 66 (28.3 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 43/185 (23%), Positives = 72/185 (38%)
Query: 10 QQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSN 69
QQ T V+ S ++ S + T PA ++ ++STP GP T S++ A ++
Sbjct: 357 QQQTQVKLSSTSIPSNNTPSPPSHPTLPASTASSLPSSSTP--GPITSNSLS-QASSVPG 413
Query: 70 ASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTS--STKEEDVGNFPGRRSSPSLTDVRV 127
++ L G V ++ +S P + LTS S+ G G +P
Sbjct: 414 VESSRLGL-GKGGV--TVTSSSSVSQMPGLGLTSLSSSLNTMAGLLSGSTPAPYAQAAAG 470
Query: 128 MGRGGXXXXXXXXXXXXXATAVPSN----GNLGAVPLVSDV-AKRNILGAEERLGS-SGM 181
GG ++PS N GA + A +LG+ G+ +G
Sbjct: 471 GTTGGASSGPVGSGSSSAGISIPSGVVGGANTGATSNGTGTGASIGLLGSSPGHGTLTGG 530
Query: 182 VQSLV 186
+ +LV
Sbjct: 531 ILNLV 535
Score = 63 (27.2 bits), Expect = 5.2e-38, Sum P(2) = 5.2e-38
Identities = 35/118 (29%), Positives = 44/118 (37%)
Query: 13 TSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASN 72
TS D S S + SS ST T GP+ SI +P T S A
Sbjct: 597 TSYSAVVADNTPDSSLSSASQSQNSHSSSSSSSTNQTLDNGPSLLSSITLPPSTPSPAFT 656
Query: 73 TSPVLPGSSSV-RGVFD---NTGPISS-SPPVNLTSSTKEEDVG-NFPGRRSSPSLTD 124
S PG S+ G NT I + PP +L + + +G G S LTD
Sbjct: 657 DST--PGGGSLLNGPHSYTPNTEAIKAPEPPSSLKAMAERAALGLALDGEIPSLHLTD 712
Score = 62 (26.9 bits), Expect = 6.7e-38, Sum P(2) = 6.7e-38
Identities = 38/177 (21%), Positives = 65/177 (36%)
Query: 173 EERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVA-MAGRVFTPSMGMQ 231
E++ G S + SP+ N + + +GS S+++ ++A + G S G
Sbjct: 281 EDKRGRSTDSEVSQSPVKNGNPSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSS 340
Query: 232 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQ 291
S Q P Q + +T++ H L + SS
Sbjct: 341 LLASFSSAVQQHPPQSQQQTQVKLSSTS--IPSNNTPSPPSHPTLPAST-ASSLPSSSTP 397
Query: 292 NPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPN-PIHQQSSQQTLMSG 347
P+ SQ SS+ LG+ G+ +S+S+ Q P + SS M+G
Sbjct: 398 GPITSNSLSQASSVPGVESSRLGLGKGGVTVTSSSSVSQMPGLGLTSLSSSLNTMAG 454
Score = 57 (25.1 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
Identities = 24/77 (31%), Positives = 34/77 (44%)
Query: 29 SDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFD 88
++VA PP+ G+T+ + V TP S A N+ ++S SSS D
Sbjct: 580 TNVAPARPPSGLKQNGATSYSAVVADNTPDSSLSSASQSQNSHSSS----SSSSTNQTLD 635
Query: 89 NTGPISSSPPVNLTSST 105
N GP S + L ST
Sbjct: 636 N-GP-SLLSSITLPPST 650
Score = 50 (22.7 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 300 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQKDADV 354
+ SS+S GLGL + +N++ P P Q ++ T +GG V
Sbjct: 429 TSSSSVSQMPGLGLTSLSSSLNTMAGLLSGSTPAPYAQAAAGGT--TGGASSGPV 481
Score = 50 (22.7 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 32/116 (27%), Positives = 49/116 (42%)
Query: 12 VTSVQEQGEDTASQDSNSDVAARTP----PAKSSGVGSTAS-TPAVGPATPIS---INVP 63
++S +S S+S V+ T A S G AS + AV P S V
Sbjct: 304 LSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSSLLASFSSAVQQHPPQSQQQTQVK 363
Query: 64 AQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSS 119
+ S SN +P P ++ ++ P SSS P +TS++ + + PG SS
Sbjct: 364 LSSTSIPSNNTPSPPSHPTLPASTASSLP-SSSTPGPITSNSLSQ-ASSVPGVESS 417
Score = 48 (22.0 bits), Expect = 2.1e-38, Sum P(3) = 2.1e-38
Identities = 28/103 (27%), Positives = 45/103 (43%)
Query: 1 MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISI 60
+PAT+++T S Q ED S+S TP + +S +PA G T I
Sbjct: 234 IPATLMAT-----SPQGHIEDEMFLQSSS-----TPTSTTSS-SPIPPSPATG-TTEILE 281
Query: 61 NVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTS 103
+ ++ + + SPV G+ S+ + SSS +L S
Sbjct: 282 DKRGRSTDSEVSQSPVKNGNPSLSSFSSSASSGSSSSSSSLVS 324
>ASPGD|ASPL0000074489 [details] [associations]
symbol:AN4585 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0006355 EMBL:BN001303 HOGENOM:HOG000184850
OMA:ESIYHLP EnsemblFungi:CADANIAT00005852 Uniprot:C8V7V5
Length = 616
Score = 389 (142.0 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 75/149 (50%), Positives = 98/149 (65%)
Query: 471 QMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDT 530
++L ++ P+P DSE+ R Y P++P TP YPQ I+ +P +E +D TDT
Sbjct: 478 RLLTASAANCPEPGDSEKPRHYKPQNPYNTPLYYPQEPLAILDDPRLYETGRID---TDT 534
Query: 531 LFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFH 590
LF+ FYY+Q +YQQYLAAK LK QSWR+H++Y TWFQRHEEPK +EFEQGTY +FD+
Sbjct: 535 LFYLFYYRQGSYQQYLAAKALKGQSWRFHKQYQTWFQRHEEPKTITEEFEQGTYRFFDY- 593
Query: 591 IANDDLQHGWCQRIKTEFTFEYNYLEDEL 619
+ W R K +F F Y YLEDEL
Sbjct: 594 ------ESTWMNRRKADFKFIYKYLEDEL 616
Score = 54 (24.1 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 36 PPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS 95
P A + S+ ++P V A P+ PA + S S V + + S
Sbjct: 352 PSAVPASKASSTASPVVTLAQPVPKATPAAAIVAEEGRSRTPAFSPKVSAAVSASNTVPS 411
Query: 96 SPPVNL--TSSTKEEDVGN 112
+P ++ T+STK N
Sbjct: 412 TPAMDKAETASTKPPAAAN 430
Score = 53 (23.7 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 34/145 (23%), Positives = 57/145 (39%)
Query: 18 QGEDTASQDSNSDVAARTP-PAKSSGVGSTASTPAVG--PATPISINVPAQTLSNASNTS 74
+ E +A+ ++P P ++ S++S+ A G PA P + +P +TL AS +
Sbjct: 268 KAEASATSHRRPSAQMKSPLPVLATLHPSSSSSSASGMKPAPPPT-RLPGETLKYASAAA 326
Query: 75 PVLPGSSSVRGVFDNTGPISSSP------PVNLTSSTKEEDVGNF-PGRRSSPSLTDVRV 127
+ G+ P +SP P + SST V P +++P+ V
Sbjct: 327 AAAASDKNGVGIAPLPPPPGASPAFPSAVPASKASSTASPVVTLAQPVPKATPAAAIVAE 386
Query: 128 MGRGGXXXXXXXXXXXXXAT-AVPS 151
GR A+ VPS
Sbjct: 387 EGRSRTPAFSPKVSAAVSASNTVPS 411
Score = 40 (19.1 bits), Expect = 8.8e-35, Sum P(2) = 8.8e-35
Identities = 16/63 (25%), Positives = 20/63 (31%)
Query: 19 GEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP 78
GE + + PP + S T A P S Q L AS + P
Sbjct: 431 GESNKENQAGEESIYHLPPGLQDLIHSFEVTKNRASANPSSQPPSVQRLLTASAANCPEP 490
Query: 79 GSS 81
G S
Sbjct: 491 GDS 493
>UNIPROTKB|H0Y5X7 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H0Y5X7 Ensembl:ENST00000457463 Uniprot:H0Y5X7
Length = 288
Score = 340 (124.7 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 64/117 (54%), Positives = 79/117 (67%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 142 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 199
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ 581
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ
Sbjct: 200 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQ 253
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 306 SAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSS 340
SA A G G APG + + P P++ SS
Sbjct: 5 SAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPPSS 39
Score = 37 (18.1 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAP 318
G L G QFS+ + S S++ +A + G++ P
Sbjct: 51 GALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDP 91
>POMBASE|SPAC1B3.05 [details] [associations]
symbol:not3 "CCR4-Not complex subunit Not3/5 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006402 "mRNA
catabolic process" evidence=IC] [GO:0030015 "CCR4-NOT core complex"
evidence=ISO] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
PomBase:SPAC1B3.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006351 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850 PIR:T38023
RefSeq:NP_594789.2 STRING:O13870 EnsemblFungi:SPAC1B3.05.1
GeneID:2542126 OrthoDB:EOG4NW2V3 NextBio:20803198 Uniprot:O13870
Length = 640
Score = 355 (130.0 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
Identities = 70/144 (48%), Positives = 88/144 (61%)
Query: 475 SAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFA 534
S Y +P D+ + + YIP+ P P YPQ P+ + E + DTLF+
Sbjct: 505 SCVY-VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYM 558
Query: 535 FYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIAND 594
FYY+ TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+ DEFE G+Y YFDF D
Sbjct: 559 FYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDFE--GD 616
Query: 595 DLQHGWCQRIKTEFTFEYNYLEDE 618
W QR K +F F Y YLED+
Sbjct: 617 -----WVQRKKADFRFTYQYLEDD 635
Score = 49 (22.3 bits), Expect = 6.8e-31, Sum P(2) = 6.8e-31
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 16 QEQGEDTASQDSNSDVAARTPPAKSSGVGS-TASTPAVGPATPISIN---VPAQTLSNAS 71
Q+ G + +++ S+V P A +S V + T T P+TP+S++ V + NA+
Sbjct: 314 QKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNAT 373
Query: 72 NTSP----------------VLPGSSSVRGVFDNTGPIS-SSPPVNLTS-STKEEDVGN 112
+T+P + S S + P + +SP +N T +K + +G+
Sbjct: 374 HTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPETPNSPRLNSTVIQSKWDSLGH 432
>WB|WBGene00003826 [details] [associations]
symbol:ntl-3 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 328 (120.5 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 473 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 531
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 532 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 591
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 592 ANDDLQHGWCQRIKTEFTFEYNYLEDE 618
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 79 (32.9 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 1 MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPA--------------KSSGVGST 46
+P ++ S H +V + + AS+DSN D RTPP S G +
Sbjct: 304 VPLSMPSPH----AVTPELKRLASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRS 358
Query: 47 ASTPAVGPATPISINVPAQTLSNASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NL 101
+TP P+TPIS N PA +L+ A+ SPV P +++ +S P ++
Sbjct: 359 TTTPV--PSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESI 416
Query: 102 TSST 105
TS+T
Sbjct: 417 TSTT 420
Score = 42 (19.8 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 23 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 82
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 83 VRGVFDNTGPISSSPPVNLTSSTKEEDV 110
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
>UNIPROTKB|G5EFX8 [details] [associations]
symbol:ntl-3 "Protein NTL-3, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006355 GO:GO:0040035 KO:K12580
GeneTree:ENSGT00390000014743 OMA:ESIYHLP EMBL:AL132860 EMBL:Z92826
RefSeq:NP_001076652.1 UniGene:Cel.9672 ProteinModelPortal:G5EFX8
IntAct:G5EFX8 EnsemblMetazoa:Y56A3A.1a.1 EnsemblMetazoa:Y56A3A.1a.2
GeneID:176614 KEGG:cel:CELE_Y56A3A.1 CTD:176614 WormBase:Y56A3A.1a
NextBio:893304 Uniprot:G5EFX8
Length = 701
Score = 328 (120.5 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 74/147 (50%), Positives = 88/147 (59%)
Query: 473 LESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPA-FWERLSLDSYGTDTL 531
LE A K P DSE+ R+Y+ + P Y Q AP S+ ++ RL+ DTL
Sbjct: 566 LELACAKATFPLDSEKPRNYLSKVSFPVPSWYGQT-APNTSDSLEYYLRLA-----PDTL 619
Query: 532 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHI 591
FF FYY + T Q LAAK LKK SWR+H KY TWFQRHEEPK D++EQGTYVYFDF
Sbjct: 620 FFIFYYMEGTRAQLLAAKALKKLSWRFHTKYLTWFQRHEEPKQITDDYEQGTYVYFDFE- 678
Query: 592 ANDDLQHGWCQRIKTEFTFEYNYLEDE 618
W QR K FTFEY +LED+
Sbjct: 679 -------KWSQRKKESFTFEYKFLEDK 698
Score = 79 (32.9 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 1 MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPA--------------KSSGVGST 46
+P ++ S H +V + + AS+DSN D RTPP S G +
Sbjct: 304 VPLSMPSPH----AVTPELKRLASKDSNVD-RPRTPPVTPASAAPPPPGIPYNSVAAGRS 358
Query: 47 ASTPAVGPATPISINVPAQTLSNASN---TSPVLPGSSSVRGVFDNTGPISSSPPV--NL 101
+TP P+TPIS N PA +L+ A+ SPV P +++ +S P ++
Sbjct: 359 TTTPV--PSTPISANSPAPSLAQAAPIAAASPVFPPAAAAASKPVLAQSVSEMPQKKESI 416
Query: 102 TSST 105
TS+T
Sbjct: 417 TSTT 420
Score = 42 (19.8 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 20/88 (22%), Positives = 35/88 (39%)
Query: 23 ASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSS 82
AS+ + + P K S +T+ A PAT + T S+ P++ +
Sbjct: 397 ASKPVLAQSVSEMPQKKESITSTTSRGSAAAPAT--TTTTTTTTTSSEPAEVPLVV-QQT 453
Query: 83 VRGVFDNTGPISSSPPVNLTSSTKEEDV 110
V F N G S + LT +++ +
Sbjct: 454 VSETFVN-GVDSPAAATRLTQQERQQQL 480
>ZFIN|ZDB-GENE-030131-5838 [details] [associations]
symbol:cnot3b "CCR4-NOT transcription complex,
subunit 3b" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
ZFIN:ZDB-GENE-030131-5838 GO:GO:0005634 GO:GO:0006355
HOVERGEN:HBG051042 KO:K12580 EMBL:BC045499 IPI:IPI00859465
RefSeq:NP_956134.1 UniGene:Dr.6354 ProteinModelPortal:Q7ZVL4
STRING:Q7ZVL4 PRIDE:Q7ZVL4 GeneID:327627 KEGG:dre:327627 CTD:327627
InParanoid:Q7ZVL4 NextBio:20810115 ArrayExpress:Q7ZVL4 Bgee:Q7ZVL4
Uniprot:Q7ZVL4
Length = 908
Score = 235 (87.8 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 48/95 (50%), Positives = 61/95 (64%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
DQ+Y M ESA+ +P P DSER R Y+ R+P T P + Q+ P + F++RLS
Sbjct: 742 DQLYQQAMQESAWAHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPPHSDSVEFYQRLS-- 799
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYH 559
T+TLFF FYY + T QYLAAK LKKQSWR+H
Sbjct: 800 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 831
Score = 88 (36.0 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 55/238 (23%), Positives = 96/238 (40%)
Query: 7 STHQQVTSVQEQGE--DTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINVPA 64
+T QQ Q+Q + ++AS SNS A+ + +S S +T +GP TP S +
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 65 QTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTD 124
+S +S+ + G+S++ G + S P +L+ G+ P + +
Sbjct: 421 LGMSLSSSLG-LGKGTSALTGTNQMPSLVLSGMPASLSGFLS----GSTPAPYAQAAAAG 475
Query: 125 VRVMGRGGXXXXXXXXXXXXXA-TAVPSNGNLGAVPLVSDVAKRNILGAEERLGSSGMVQ 183
G T++ +NG+LG+ L+ + ILG LGS+
Sbjct: 476 CVGSGLSSAIGTNISSTNSSGVVTSLGTNGSLGSTSLLGSGS--GILG----LGSTFAAV 529
Query: 184 SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMA---GRVFTPSMGMQWRTGNSF 238
+ L+ + S G++ G I S+ A A G P G + G+S+
Sbjct: 530 EPLPLLAPSPVGSTLTSGSN-VGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSY 586
Score = 67 (28.6 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 36/153 (23%), Positives = 55/153 (35%)
Query: 187 SPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSFQNQNE-PG 245
S LS+ LS ++ G I T+A +G + S + QN
Sbjct: 305 SSLSSSSSLSSSSSGASSISLISM----ATLASSGSSASGSSSLLGNISVPLQNSGSYSS 360
Query: 246 QFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQ--FSSQQNPLLQQFNSQ-- 301
+ +T+ + Q + SN + +P + +S PL SQ
Sbjct: 361 ATQQQTQQSQQQHQPKNSASSHSNSTSASNSILLPTSASTSPPNTSTLGPLTPSSQSQTN 420
Query: 302 -GSSISAQAGLGLGVQA-PGMNSVTSASLQQQP 332
G S+S+ GLG G A G N + S L P
Sbjct: 421 LGMSLSSSLGLGKGTSALTGTNQMPSLVLSGMP 453
Score = 53 (23.7 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 300 SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQ 342
S GSS S + L + P NS + +S QQ QQS QQ
Sbjct: 333 SSGSSASGSSSLLGNISVPLQNSGSYSSATQQQT---QQSQQQ 372
Score = 49 (22.3 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 32/132 (24%), Positives = 56/132 (42%)
Query: 2 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGV---GSTASTPAVGPATPI 58
P+ V ST ++V G + + + + T P SG G ++ + VG +T
Sbjct: 537 PSPVGSTLTSGSNVGVIGSSGGTSGTANATGSGTQPRPPSGPKQNGGSSYSAVVGDSTSD 596
Query: 59 S-INVPAQTLSNASN------TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVG 111
S +N +Q+ ++ S+ T+ ++ SS+ G P SS PV S +
Sbjct: 597 SALNSASQSQNSQSSSLNLAVTNQLMDSGSSLLGSM-TLAP-SSPSPVYSESKAGGGSLL 654
Query: 112 NFPGRRSSPSLT 123
N P + P+ T
Sbjct: 655 NGPHSYTQPADT 666
Score = 43 (20.2 bits), Expect = 2.3e-20, Sum P(3) = 2.3e-20
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 283 GNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQ-QQPNPIHQQS 339
G+ S N Q NSQ SS++ L G + + S +L P+P++ +S
Sbjct: 591 GDSTSDSALNSASQSQNSQSSSLNLAVTNQL--MDSGSSLLGSMTLAPSSPSPVYSES 646
Score = 40 (19.1 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 32/142 (22%), Positives = 54/142 (38%)
Query: 60 INVPAQTLSNASNTSP-VLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 118
I +P S A + + SSS ++ PI SP T+S E+ G+
Sbjct: 234 IPLPVVPTSPAGHPDDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDEKKRGHSTDSEI 293
Query: 119 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 178
S S + G ++ S+G ++ L+S +A G+ GS
Sbjct: 294 SQSPI------KNGNQSSSLSSSSSLSSS---SSG-ASSISLIS-MATLASSGSSAS-GS 341
Query: 179 SGMVQSLVSPLSNRMILSQAAK 200
S ++ ++ PL N S A +
Sbjct: 342 SSLLGNISVPLQNSGSYSSATQ 363
Score = 39 (18.8 bits), Expect = 8.3e-18, Sum P(3) = 8.3e-18
Identities = 18/90 (20%), Positives = 41/90 (45%)
Query: 1 MPATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPAT---- 56
+P V+ T E + ++S +++ ++ PP+ ++ ++ G +T
Sbjct: 234 IPLPVVPTSPAGHPDDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDEKKRGHSTDSEI 293
Query: 57 ---PISINVPAQTLSNASNTSPVLPGSSSV 83
PI + +LS++S+ S G+SS+
Sbjct: 294 SQSPIKNGNQSSSLSSSSSLSSSSSGASSI 323
>UNIPROTKB|H7C5J4 [details] [associations]
symbol:CNOT3 "CCR4-NOT transcription complex subunit 3"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7879 EMBL:AC012314
ProteinModelPortal:H7C5J4 Ensembl:ENST00000471126 Bgee:H7C5J4
Uniprot:H7C5J4
Length = 88
Score = 195 (73.7 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/83 (54%), Positives = 48/83 (57%)
Query: 544 QYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQ-GTYVYFDFHIANDDLQ----- 597
QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQ ++ A Q
Sbjct: 2 QYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQIPDHLLVHSLTAFSPGQGTYIY 61
Query: 598 ---HGWCQRIKTEFTFEYNYLED 617
W QR K FTFEY YLED
Sbjct: 62 FDYEKWGQRKKEGFTFEYRYLED 84
>UNIPROTKB|F1RNH3 [details] [associations]
symbol:CNOT3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 GO:GO:0005634
GO:GO:0006355 GO:GO:0000932 CTD:4849 KO:K12580 OMA:IFYYLEP
GeneTree:ENSGT00390000014743 EMBL:FP476135 RefSeq:XP_003356092.1
Ensembl:ENSSSCT00000003625 GeneID:100520963 KEGG:ssc:100520963
Uniprot:F1RNH3
Length = 719
Score = 169 (64.5 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 611 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 668
Query: 525 SYGTDTLFFAFYY 537
T+TLFF FYY
Sbjct: 669 ---TETLFFIFYY 678
Score = 76 (31.8 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 30/88 (34%), Positives = 40/88 (45%)
Query: 27 SNSDVAARTPP--AKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSP-----VLPG 79
S S V A +P A SS G+T S+ A+GP + N P T S +P V PG
Sbjct: 429 SYSSVVADSPAEVALSSSGGNTTSSQALGPPSGPH-NPPPSTSKEPSAAAPTGAGGVAPG 487
Query: 80 SSSVRGVFDNTGPISSSPPVNLTSSTKE 107
S + G P+ +PP + T S E
Sbjct: 488 SGNNSGGPSLLVPLPVNPPSSPTPSFSE 515
Score = 60 (26.2 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 31/114 (27%), Positives = 44/114 (38%)
Query: 17 EQGEDTASQDSNSDVAARTPPAK--SSGVGSTA--STPAVGPATPISINVPAQTLSNASN 72
E ED + ++D PAK S V S +PAV P+ P P T S A +
Sbjct: 280 ENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPSYPSG---PPPTAS-ALS 335
Query: 73 TSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRSSPSLTDVR 126
T+P G+ + GP +S P + + + P S PS R
Sbjct: 336 TTPGNNGAPAPAAPASALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTAQPR 389
Score = 51 (23.0 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 27/100 (27%), Positives = 42/100 (42%)
Query: 7 STHQQVT-SVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS----TP----AVGPATP 57
ST +V+ S + G + + A PP+ SG TAS TP A PA P
Sbjct: 291 STDSEVSQSPAKNGSKPVHSNQHPQSPA-VPPSYPSGPPPTASALSTTPGNNGAPAPAAP 349
Query: 58 ISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSP 97
S P + + + N+ P + +V + GP ++ P
Sbjct: 350 ASALGPKASPAPSHNSGTPAPYAQAVAPPAPS-GPSTAQP 388
Score = 47 (21.6 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 282 GGNKQFSSQQNPLLQQFN---SQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQ 338
GGN S P N S SA A G G APG + + P P++
Sbjct: 447 GGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLLVPLPVNPP 506
Query: 339 SS 340
SS
Sbjct: 507 SS 508
Score = 45 (20.9 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 3 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 61
+ V + +V G T+SQ PP +S S A+ G P S N
Sbjct: 432 SVVADSPAEVALSSSGGNTTSSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGN 490
>CGD|CAL0005191 [details] [associations]
symbol:orf19.6075 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030015 "CCR4-NOT core complex" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA] [GO:0031087 "deadenylation-independent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0051726 "regulation of cell
cycle" evidence=IEA] [GO:0000749 "response to pheromone involved in
conjugation with cellular fusion" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 CGD:CAL0005191 GO:GO:0005634
GO:GO:0006355 EMBL:AACQ01000036 EMBL:AACQ01000035 eggNOG:COG5601
HOGENOM:HOG000246523 KO:K12605 RefSeq:XP_718935.1
RefSeq:XP_719037.1 STRING:Q5AB95 GeneID:3639296 GeneID:3639453
KEGG:cal:CaO19.13496 KEGG:cal:CaO19.6075 Uniprot:Q5AB95
Length = 182
Score = 157 (60.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 523 LDSYGTDTLFFAFYYQ-QNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEF 579
+ ++ +TLF+ FY + ++T Q+Y AA+EL ++WRYH+ W + EP + N +
Sbjct: 95 IQNFTDETLFYIFYMKPRDTLQEY-AARELVARNWRYHKGIQVWLTKDSNVEPVLINPDV 153
Query: 580 EQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 616
E+G Y++FD H W ++IK EF Y+ ++
Sbjct: 154 EKGVYIFFD--------PHNW-EKIKKEFVLHYSLVQ 181
>UNIPROTKB|F1MID5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GeneTree:ENSGT00390000001285 EMBL:DAAA02013212 EMBL:DAAA02013213
EMBL:DAAA02013214 EMBL:DAAA02013215 IPI:IPI00905002
UniGene:Bt.30639 Ensembl:ENSBTAT00000057053 ArrayExpress:F1MID5
Uniprot:F1MID5
Length = 403
Score = 153 (58.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 297 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 356
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 357 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 386
Score = 59 (25.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 31/112 (27%), Positives = 43/112 (38%)
Query: 16 QEQGEDTASQDSNSDVAARTPPAKSSGVGSTAS--TPAVGPATPISI-----NVPAQTLS 68
Q+ G + + SD A + G G+ P G A + + N +Q S
Sbjct: 78 QQNGSENVTGLDLSDFPALADRNRREGSGNPTPLINPLAGRAPYVGMVTKPANEQSQDFS 137
Query: 69 NASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEEDVGNFPGRRSS 119
+ P LPGSS N S+ + TSST D FPG +SS
Sbjct: 138 IHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST---DGPKFPGDKSS 186
>UNIPROTKB|F1M3V0 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00949675 Ensembl:ENSRNOT00000064732
ArrayExpress:F1M3V0 Uniprot:F1M3V0
Length = 493
Score = 153 (58.9 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 387 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 446
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 447 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 476
Score = 60 (26.2 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 210 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 265
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 266 DGPKFPGDKSS 276
Score = 54 (24.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 272 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 331
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 30 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 85
Query: 332 P-NPIHQQSSQQ 342
P NP + + Q
Sbjct: 86 PMNPRNMMNHSQ 97
Score = 40 (19.1 bits), Expect = 2.7e-09, Sum P(3) = 2.7e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 104 IPSRTNSMSSSGLGSPNRSSPSI 126
>UNIPROTKB|F1SH40 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:CU467026
Ensembl:ENSSSCT00000000541 Uniprot:F1SH40
Length = 541
Score = 154 (59.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 41/123 (33%), Positives = 58/123 (47%)
Query: 497 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 556
P + P Y IV A + L YG D LF+ +Y Q LAA EL + W
Sbjct: 414 PFLMPIEYVTTVIHIVFQLA---AIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDW 470
Query: 557 RYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNY 614
RYH++ W R EP + + +E+GTY +FD N W +++ EF EY+
Sbjct: 471 RYHKEERVWITRAPGMEPTMKTNTYERGTYYFFD--CLN------W-RKVAKEFHLEYDK 521
Query: 615 LED 617
LE+
Sbjct: 522 LEE 524
Score = 61 (26.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 203 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 259
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 260 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 319
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 320 MNSVTSASLQQQP-NPIHQQSSQQ 342
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 59 (25.8 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 24/70 (34%), Positives = 30/70 (42%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEED 109
P VG T + N +Q S + P LPGSS N S+ TSS+ D
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTSSST--D 313
Query: 110 VGNFPGRRSS 119
FPG +SS
Sbjct: 314 GPKFPGDKSS 323
Score = 41 (19.5 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 31 VAARTPPAKSSGVGSTA-STPAV 52
+ +RT SSG+GS + S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPSRSSPSI 173
>MGI|MGI:1919318 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010606 "positive
regulation of cytoplasmic mRNA processing body assembly"
evidence=ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000036 "regulation of stem
cell maintenance" evidence=ISO] InterPro:IPR007282 Pfam:PF04153
MGI:MGI:1919318 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 CTD:4848 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
ChiTaRS:CNOT2 EMBL:AK011231 EMBL:AK078121 EMBL:AK149767
EMBL:BC043133 EMBL:BC063105 EMBL:BC065171 IPI:IPI00132821
IPI:IPI00410747 IPI:IPI00410748 RefSeq:NP_001032935.2
RefSeq:NP_001032936.2 RefSeq:NP_001032937.1 RefSeq:NP_082358.2
UniGene:Mm.351553 ProteinModelPortal:Q8C5L3 STRING:Q8C5L3
PhosphoSite:Q8C5L3 PaxDb:Q8C5L3 PRIDE:Q8C5L3
Ensembl:ENSMUST00000105265 Ensembl:ENSMUST00000105267
Ensembl:ENSMUST00000169921 GeneID:72068 KEGG:mmu:72068
UCSC:uc007hca.2 UCSC:uc007hcb.2 UCSC:uc007hcd.2
GeneTree:ENSGT00390000001285 InParanoid:Q8C5L3 NextBio:335352
Bgee:Q8C5L3 CleanEx:MM_CNOT2 Genevestigator:Q8C5L3
GermOnline:ENSMUSG00000020166 Uniprot:Q8C5L3
Length = 540
Score = 153 (58.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 203 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 259
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 260 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 319
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 320 MNSVTSASLQQQP-NPIHQQSSQQ 342
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 60 (26.2 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 312
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|E2QSF5 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
CTD:4848 KO:K12605 OMA:TQDFSIH GeneTree:ENSGT00390000001285
EMBL:AAEX03007054 EMBL:AAEX03007055 RefSeq:XP_850576.1
Ensembl:ENSCAFT00000000701 GeneID:474446 KEGG:cfa:474446
NextBio:20850458 Uniprot:E2QSF5
Length = 540
Score = 153 (58.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 203 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 259
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 260 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 319
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 320 MNSVTSASLQQQP-NPIHQQSSQQ 342
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|Q9NZN8 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=TAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=NAS] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0010606 "positive regulation
of cytoplasmic mRNA processing body assembly" evidence=IMP]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0001226 "RNA polymerase
II transcription corepressor binding" evidence=IDA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:2000036 "regulation of stem cell
maintenance" evidence=IMP] [GO:0033147 "negative regulation of
intracellular estrogen receptor signaling pathway" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR007282
Pfam:PF04153 GO:GO:0005829 GO:GO:0005634 GO:GO:0000289
GO:GO:0001104 EMBL:AF180473 EMBL:AF113226 EMBL:AF161480
EMBL:AK000662 EMBL:AL137674 EMBL:BX641116 EMBL:BC002597
EMBL:BC011826 EMBL:AF044215 IPI:IPI00005011 IPI:IPI00017733
IPI:IPI00410621 IPI:IPI00410622 IPI:IPI00410623 PIR:T46494
RefSeq:NP_001186231.1 RefSeq:NP_001186232.1 RefSeq:NP_055330.1
UniGene:Hs.133350 UniGene:Hs.730666 ProteinModelPortal:Q9NZN8
DIP:DIP-42656N IntAct:Q9NZN8 MINT:MINT-1438957 STRING:Q9NZN8
PhosphoSite:Q9NZN8 DMDM:46396017 PaxDb:Q9NZN8 PRIDE:Q9NZN8
DNASU:4848 Ensembl:ENST00000229195 Ensembl:ENST00000418359
Ensembl:ENST00000551043 Ensembl:ENST00000551483 GeneID:4848
KEGG:hsa:4848 UCSC:uc001svv.3 UCSC:uc001svw.1 CTD:4848
GeneCards:GC12P070636 HGNC:HGNC:7878 MIM:604909 neXtProt:NX_Q9NZN8
PharmGKB:PA26673 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 InParanoid:Q9NZN8 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV PhylomeDB:Q9NZN8 ChiTaRS:CNOT2 GenomeRNAi:4848
NextBio:18670 ArrayExpress:Q9NZN8 Bgee:Q9NZN8 CleanEx:HS_CNOT2
Genevestigator:Q9NZN8 GermOnline:ENSG00000111596 Uniprot:Q9NZN8
Length = 540
Score = 153 (58.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 61 (26.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 203 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 259
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 5 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 64
Query: 260 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 319
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 65 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 120
Query: 320 MNSVTSASLQQQP-NPIHQQSSQQ 342
+++ S S P NP + + Q
Sbjct: 121 LHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 57 (25.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 40 (19.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>UNIPROTKB|F1LUT7 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00734620 Ensembl:ENSRNOT00000058355
ArrayExpress:F1LUT7 Uniprot:F1LUT7
Length = 549
Score = 153 (58.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 443 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 502
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 503 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 532
Score = 61 (26.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 29/144 (20%), Positives = 51/144 (35%)
Query: 203 DGTGSIDSNNAGETVAMAG---RVFTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQRE 259
DG + N T +M G + F + + N + +Q+ R ++
Sbjct: 14 DGHTLSEKRNYQVTNSMFGASRKKFVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPST 73
Query: 260 KFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPG 319
G + LG+P+ G S P L + SQG+ + + GV
Sbjct: 74 SGQLSQFGASLYGQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMS 129
Query: 320 MNSVTSASLQQQP-NPIHQQSSQQ 342
+++ S S P NP + + Q
Sbjct: 130 LHTPPSPSRGILPMNPRNMMNHSQ 153
Score = 60 (26.2 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 266 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 321
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 322 DGPKFPGDKSS 332
Score = 40 (19.1 bits), Expect = 4.5e-09, Sum P(3) = 4.5e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 160 IPSRTNSMSSSGLGSPNRSSPSI 182
>UNIPROTKB|F1LY92 [details] [associations]
symbol:Cnot2 "Protein Cnot2" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 RGD:1311672 GO:GO:0005634
GO:GO:0006355 IPI:IPI00366212 Ensembl:ENSRNOT00000006779
ArrayExpress:F1LY92 Uniprot:F1LY92
Length = 531
Score = 153 (58.9 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 60 (26.2 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 303
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 224 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 283
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 284 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 342
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 40 (19.1 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 142 IPSRTNSMSSSGLGSPNRSSPSI 164
>SGD|S000002324 [details] [associations]
symbol:CDC36 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0051726 "regulation of cell cycle"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0031087 "deadenylation-independent decapping
of nuclear-transcribed mRNA" evidence=IMP] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0000749 "response to pheromone
involved in conjugation with cellular fusion" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IGI;IMP;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IMP] [GO:0016567
"protein ubiquitination" evidence=IMP] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 SGD:S000002324
GO:GO:0005634 GO:GO:0005737 EMBL:BK006938 GO:GO:0016567
GO:GO:0000122 GO:GO:0051726 GO:GO:0006368 EMBL:Z67750 GO:GO:0032968
GO:GO:0000289 GO:GO:0030015 eggNOG:COG5601 HOGENOM:HOG000246523
KO:K12605 GeneTree:ENSGT00390000001285 GO:GO:0031087 EMBL:X03246
EMBL:X68020 GO:GO:0000749 OrthoDB:EOG4TB7MJ EMBL:X04287 EMBL:Z74213
EMBL:AY557644 PIR:S12304 RefSeq:NP_010116.1
ProteinModelPortal:P06100 DIP:DIP-590N IntAct:P06100
MINT:MINT-400720 STRING:P06100 PaxDb:P06100 PeptideAtlas:P06100
EnsemblFungi:YDL165W GeneID:851389 KEGG:sce:YDL165W CYGD:YDL165w
OMA:WAETSRS NextBio:968543 Genevestigator:P06100 GermOnline:YDL165W
Uniprot:P06100
Length = 191
Score = 143 (55.4 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 50/153 (32%), Positives = 77/153 (50%)
Query: 449 IGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYI-PRHPAVTPPSY--- 504
+G LS S G D + ++L++ ++ P +E +RS + PR TP S+
Sbjct: 30 LGADLSSMLYSLGIPRDSQ-DHRVLDT--FQSPW---AETSRSEVEPRF--FTPESFTNI 81
Query: 505 PQVQAPIVSNPAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY 558
P V V+ P F +R++L + +TLFF FY T Q L EL+K++WRY
Sbjct: 82 PGVLQSTVTPPCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRY 139
Query: 559 HRKYNTWFQRHE--EPKVANDEF-EQGTYVYFD 588
H+ W + EP V+ D E+G+YV+FD
Sbjct: 140 HKTLKAWLTKDPMMEPIVSADGLSERGSYVFFD 172
>UNIPROTKB|H0YHT6 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 HGNC:HGNC:7878 ChiTaRS:CNOT2 EMBL:AC025569
EMBL:AC092881 Ensembl:ENST00000551710 Bgee:H0YHT6 Uniprot:H0YHT6
Length = 104
Score = 142 (55.0 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 17 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 76
Query: 579 FEQGTYVYFD 588
+E+GTY +FD
Sbjct: 77 YERGTYYFFD 86
>UNIPROTKB|F8VV52 [details] [associations]
symbol:CNOT2 "CCR4-NOT transcription complex subunit 2"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0006355 IPI:IPI00017733 HGNC:HGNC:7878 ChiTaRS:CNOT2
EMBL:AC025569 EMBL:AC092881 PRIDE:F8VV52 Ensembl:ENST00000548159
ArrayExpress:F8VV52 Bgee:F8VV52 Uniprot:F8VV52
Length = 531
Score = 153 (58.9 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 425 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 484
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 485 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 514
Score = 57 (25.1 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 248 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 303
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 304 DGPKFPGDKSS 314
Score = 56 (24.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 224 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 283
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 20 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 79
Query: 284 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 342
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 80 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 135
Score = 40 (19.1 bits), Expect = 7.7e-09, Sum P(3) = 7.7e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 142 IPSRTNSMSSSGLGSPNRSSPSI 164
>UNIPROTKB|E1BCE7 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
OMA:TQDFSIH GeneTree:ENSGT00390000001285 EMBL:DAAA02013212
EMBL:DAAA02013213 EMBL:DAAA02013214 EMBL:DAAA02013215
IPI:IPI00692269 Ensembl:ENSBTAT00000004880 ArrayExpress:E1BCE7
Uniprot:E1BCE7
Length = 540
Score = 153 (58.9 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 434 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 493
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 494 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 523
Score = 57 (25.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ + TSST
Sbjct: 257 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLNTSGKTTSST--- 312
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 313 DGPKFPGDKSS 323
Score = 56 (24.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 23/120 (19%), Positives = 42/120 (35%)
Query: 224 FTPSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGG 283
F + + N + +Q+ R ++ G + LG+P+ G
Sbjct: 29 FVEGVDSDYHDENMYYSQSSMFPHRSEKDMLASPSTSGQLSQFGASLYGQQSALGLPMRG 88
Query: 284 NKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 342
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 89 ----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 144
Score = 40 (19.1 bits), Expect = 8.3e-09, Sum P(3) = 8.3e-09
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 151 IPSRTNSMSSSGLGSPNRSSPSI 173
>ZFIN|ZDB-GENE-070410-70 [details] [associations]
symbol:zgc:162316 "zgc:162316" species:7955 "Danio
rerio" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR007282 Pfam:PF04153 ZFIN:ZDB-GENE-070410-70
GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601 HOGENOM:HOG000246523
HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH OrthoDB:EOG44MXRV
GeneTree:ENSGT00390000001285 EMBL:CR376836 EMBL:CR382363
EMBL:BC134959 IPI:IPI00799285 RefSeq:NP_001082993.1
UniGene:Dr.78739 STRING:A4QN63 Ensembl:ENSDART00000088383
GeneID:100037372 KEGG:dre:100037372 InParanoid:A4QN63
NextBio:20788534 Uniprot:A4QN63
Length = 520
Score = 162 (62.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNT 473
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD H W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFDCH--------NW-RKVAKEFHLEYDKLEE 503
Score = 46 (21.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 39/192 (20%), Positives = 70/192 (36%)
Query: 35 TPPAKSSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVF--DNTGP 92
+P SSG S GP + + ++ SN +P L S +G ++ P
Sbjct: 40 SPSPSSSGQLSQLGASLYGPQSALGFSIRGM-----SNNNPQL-NRSLTQGTQLPSHSTP 93
Query: 93 ISSSPPVNLTSSTKEEDVGNFP-GRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPS 151
+ P ++L ++ + G P R+ S + MG G + PS
Sbjct: 94 TTGVPTMSLHTTPPSPNRGILPMNTRNMMSSQVGQGMGMSGRTNSMGSSGLGSPNRSSPS 153
Query: 152 NGNLGAVPLVSDVAKRNILGAEERLGSSGMVQSL-VSPLSNRMILSQAAKGNDGTGSIDS 210
+ +P + + + G G Q ++ LSN + G DG+ ++
Sbjct: 154 ---IICMPKQQPARQPFTINSMSGFGM-GRSQGFGMNSLSNNIF-----NGTDGSENVTG 204
Query: 211 NNAGETVAMAGR 222
+ E A+A R
Sbjct: 205 IDLSEFPALADR 216
Score = 42 (19.8 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 22/123 (17%), Positives = 48/123 (39%)
Query: 226 PSMGMQWRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNK 285
P M + + FQ+++E + + Q + G + LG + G
Sbjct: 17 PDESMYYNQASMFQHRSEKDMLPSPSPSSSGQLSQLGASLY-----GPQSALGFSIRG-- 69
Query: 286 QFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLM 345
S NP L + +QG+ + + + GV +++ T S + P++ ++ + +
Sbjct: 70 --MSNNNPQLNRSLTQGTQLPSHSTPTTGVPTMSLHT-TPPSPNRGILPMNTRNMMSSQV 126
Query: 346 SGG 348
G
Sbjct: 127 GQG 129
>UNIPROTKB|Q5ZKI3 [details] [associations]
symbol:CNOT2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR007282
Pfam:PF04153 GO:GO:0005634 GO:GO:0006355 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605 OMA:TQDFSIH
OrthoDB:EOG44MXRV GeneTree:ENSGT00390000001285 EMBL:AADN02009856
EMBL:AJ720101 IPI:IPI00592451 RefSeq:NP_001012826.1
UniGene:Gga.50456 UniGene:Gga.9400 STRING:Q5ZKI3
Ensembl:ENSGALT00000016314 GeneID:417851 KEGG:gga:417851
InParanoid:Q5ZKI3 NextBio:20821090 Uniprot:Q5ZKI3
Length = 520
Score = 153 (58.9 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 35/99 (35%), Positives = 51/99 (51%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 414 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 473
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+GTY +FD N W +++ EF EY+ LE+
Sbjct: 474 YERGTYYFFD--CLN------W-RKVAKEFHLEYDKLEE 503
Score = 54 (24.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 50 PAVGPAT-PISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEE 108
P VG T P S +Q S + P LPGSS N S+ TSS+
Sbjct: 237 PYVGMVTKPASEQ--SQDFSIHNEDFPALPGSSYKDPTSSNDDNKSNLNTSGKTSSST-- 292
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 293 DGPKFPGDKSS 303
Score = 54 (24.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 19/72 (26%), Positives = 31/72 (43%)
Query: 272 GHSNLLGMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ 331
G + LG+P+ G S P L + SQG+ + + GV +++ S S
Sbjct: 57 GQQSALGLPMRG----MSNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGIL 112
Query: 332 P-NPIHQQSSQQ 342
P NP + + Q
Sbjct: 113 PMNPRNMMNHSQ 124
Score = 40 (19.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 131 IPSRTNSMSSSGLGSPNRSSPSI 153
>RGD|1311672 [details] [associations]
symbol:Cnot2 "CCR4-NOT transcription complex, subunit 2"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001226 "RNA polymerase II transcription corepressor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0010606 "positive regulation of
cytoplasmic mRNA processing body assembly" evidence=ISO]
[GO:0030014 "CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative
regulation of intracellular estrogen receptor signaling pathway"
evidence=ISO] [GO:2000036 "regulation of stem cell maintenance"
evidence=ISO] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 RGD:1311672
GO:GO:0005634 GO:GO:0006355 CTD:4848 eggNOG:COG5601
HOGENOM:HOG000246523 HOVERGEN:HBG051041 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:BC087653 IPI:IPI00952054
RefSeq:NP_001011988.1 UniGene:Rn.99836 STRING:Q5PPJ8
Ensembl:ENSRNOT00000066396 GeneID:299805 KEGG:rno:299805
UCSC:RGD:1311672 InParanoid:Q5PPJ8 NextBio:645798
Genevestigator:Q5PPJ8 Uniprot:Q5PPJ8
Length = 429
Score = 142 (55.0 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDE 578
+ L YG D LF+ +Y Q LAA EL + WRYH++ W R EP + +
Sbjct: 349 IKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNT 408
Query: 579 FEQGTYVYFD 588
+E+GTY +FD
Sbjct: 409 YERGTYYFFD 418
Score = 60 (26.2 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 50 PAVGPATPISINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSSTKEE 108
P VG T + N +Q S + P LPGSS N S+ S TSST
Sbjct: 172 PYVGMVTKPA-NEQSQDFSIHNEDFPALPGSSYKDPTSSNDDSKSNLSTSGKTTSST--- 227
Query: 109 DVGNFPGRRSS 119
D FPG +SS
Sbjct: 228 DGPKFPGDKSS 238
Score = 40 (19.1 bits), Expect = 2.3e-08, Sum P(3) = 2.3e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 VAARTPPAKSSGVGS-TASTPAV 52
+ +RT SSG+GS S+P++
Sbjct: 66 IPSRTNSMSSSGLGSPNRSSPSI 88
Score = 39 (18.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 289 SQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP-NPIHQQSSQQ 342
S P L + SQG+ + + GV +++ S S P NP + + Q
Sbjct: 5 SNNTPQLNRSLSQGTQLPSHVTPTTGVPTMSLHTPPSPSRGILPMNPRNMMNHSQ 59
>UNIPROTKB|Q52JK6 [details] [associations]
symbol:VIP2 "Probable NOT transcription complex subunit
VIP2" species:4100 "Nicotiana benthamiana" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0015074 "DNA integration" evidence=IMP]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 GO:GO:0015074 EMBL:DQ000202 Uniprot:Q52JK6
Length = 603
Score = 154 (59.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 469 NMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGT 528
N+ E+ + P E A+ P T P + P N A++ + LD
Sbjct: 463 NLNSAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD---- 514
Query: 529 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVY 586
TLF+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+
Sbjct: 515 -TLFYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYIC 573
Query: 587 FD 588
FD
Sbjct: 574 FD 575
Score = 45 (20.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 39/157 (24%), Positives = 59/157 (37%)
Query: 98 PVNLTSSTKEEDVGNFPGRRSSPSLTDVRVMGRGGXXXXXXXXXXXXXAT--AVPSNGN- 154
P NL S+ + GN G S V+G G + GN
Sbjct: 34 PNNLPSALSQIPQGNSHGHSGMTSRGGTSVVGNPGYSSNTNGVGGSIPGILPTFAAIGNR 93
Query: 155 -----LGAVPLVSDVAKR------NILGAEE--RLGSSGMVQSLVSPLSNRMILSQAAKG 201
LG P++ + R NI+G R SSG S V L++R+ ++
Sbjct: 94 SSVPGLGVSPILGNAGPRMTNSVGNIVGGGNIGRSISSGAGLS-VPGLASRLNMN----A 148
Query: 202 NDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGNSF 238
N G+G++ N G M+G + S + GNS+
Sbjct: 149 NSGSGNL--NVQGPNRLMSGVLQQASPQVLSMLGNSY 183
Score = 43 (20.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 302 GSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 347
G +I G G+ PG+ S + + ++ Q + LMSG
Sbjct: 122 GGNIGRSISSGAGLSVPGLASRLNMNANSGSGNLNVQGPNR-LMSG 166
>CGD|CAL0002492 [details] [associations]
symbol:NOT5 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0016337 "cell-cell adhesion" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015 "CCR4-NOT core
complex" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 CGD:CAL0002492
GO:GO:0005634 GO:GO:0030445 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0016337 EMBL:AACQ01000053
EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1 RefSeq:XP_717644.1
STRING:Q5A755 GeneID:3640763 GeneID:3640828 KEGG:cal:CaO19.12573
KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 134 (52.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 472 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 530
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 531 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 568
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 63 (27.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 25/99 (25%), Positives = 45/99 (45%)
Query: 16 QEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPA--VG----PATPISINV-PAQTLS 68
+ + E+ ++ + + PP SS V S++S+ +G PAT I +V +
Sbjct: 257 RRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIG 316
Query: 69 NASNTSPVLPGSSS--VRGVFDNTGPISSSPPVNLTSST 105
+ +N S S+S V+ + P + PP+ TS T
Sbjct: 317 DQNNNSASSASSTSTPVKKLKPTLAPAPAPPPI--TSGT 353
Score = 62 (26.9 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 92 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 148
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 149 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 207
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 208 IDSNNAGETVAMAGRVFTP 226
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 52 (23.4 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 31/129 (24%), Positives = 55/129 (42%)
Query: 10 QQVTSVQEQGEDTASQDSN-SDVAARTPPA---KSS-----GVG---STASTPAVGPATP 57
QQ + ++S SN +++ TPPA K S +G + +++ A +TP
Sbjct: 273 QQQNPPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTP 332
Query: 58 ISINVPAQTLSNASNTSPVLPGSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGR 116
+ P TL+ A P+ G+S + T SS+ ++ + + + N R
Sbjct: 333 VKKLKP--TLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNR 390
Query: 117 RSSP-SLTD 124
SP + TD
Sbjct: 391 SVSPLASTD 399
>UNIPROTKB|Q5A755 [details] [associations]
symbol:NOT5 "Potential mRNA deadenylase and CCR4-NOT
complex subunit Not5p" species:237561 "Candida albicans SC5314"
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0016337 "cell-cell
adhesion" evidence=IMP] [GO:0030445 "yeast-form cell wall"
evidence=IDA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0071216 "cellular response to biotic stimulus"
evidence=IMP] InterPro:IPR007207 InterPro:IPR007282
InterPro:IPR012270 Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290
CGD:CAL0002492 GO:GO:0005634 GO:GO:0030445 GO:GO:0071216
GO:GO:0036180 GO:GO:0009405 GO:GO:0006355 GO:GO:0016337
EMBL:AACQ01000053 EMBL:AACQ01000052 KO:K12580 RefSeq:XP_717570.1
RefSeq:XP_717644.1 STRING:Q5A755 GeneID:3640763 GeneID:3640828
KEGG:cal:CaO19.12573 KEGG:cal:CaO19.5107 Uniprot:Q5A755
Length = 662
Score = 134 (52.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 31/100 (31%), Positives = 53/100 (53%)
Query: 472 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVS-NPAFWERLSLDSYGTDT 530
+LE++ P D+E+ R Y P + V P S Q P+ N + + + + DT
Sbjct: 493 LLETSLLNCPDSYDAEKPRQYNPVN--VHPSSIDYPQEPMYELNSSHY----MKKFDNDT 546
Query: 531 LFFAFYYQQ--NTYQQYLAAKELKKQSWRYHRKYNTWFQR 568
LFF FYY ++ +Y AAKEL ++ W ++ +++ WF +
Sbjct: 547 LFFCFYYGDGIDSISKYNAAKELSRRGWVFNTEFSQWFSK 586
Score = 63 (27.2 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 25/99 (25%), Positives = 45/99 (45%)
Query: 16 QEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPA--VG----PATPISINV-PAQTLS 68
+ + E+ ++ + + PP SS V S++S+ +G PAT I +V +
Sbjct: 257 RRRDEERKREEKEKEKQQQNPPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIG 316
Query: 69 NASNTSPVLPGSSS--VRGVFDNTGPISSSPPVNLTSST 105
+ +N S S+S V+ + P + PP+ TS T
Sbjct: 317 DQNNNSASSASSTSTPVKKLKPTLAPAPAPPPI--TSGT 353
Score = 62 (26.9 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 31/139 (22%), Positives = 54/139 (38%)
Query: 92 PISSSPPVNLTSSTKEEDVGNF--PGRRSSPSLTDVRVMG-RGGXXXXXXXXXXXXXATA 148
P +S V+ +SS+ + ++GN P + PS+ V +G +
Sbjct: 277 PPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKL 336
Query: 149 VPSNGNLGAVP-LVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGS 207
P+ A P + S + N + A + +S S ++ +N + KGN
Sbjct: 337 KPTLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDN--NNTNKGNRSVSP 394
Query: 208 IDSNNAGETVAMAGRVFTP 226
+ S + T A A V TP
Sbjct: 395 LASTD-NHTHAPAA-VSTP 411
Score = 52 (23.4 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 31/129 (24%), Positives = 55/129 (42%)
Query: 10 QQVTSVQEQGEDTASQDSN-SDVAARTPPA---KSS-----GVG---STASTPAVGPATP 57
QQ + ++S SN +++ TPPA K S +G + +++ A +TP
Sbjct: 273 QQQNPPRTSSSVSSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTP 332
Query: 58 ISINVPAQTLSNASNTSPVLPGSSSVRGV-FDNTGPISSSPPVNLTSSTKEEDVGNFPGR 116
+ P TL+ A P+ G+S + T SS+ ++ + + + N R
Sbjct: 333 VKKLKP--TLAPAPAPPPITSGTSYSNAIKAAQTASTSSTSNSSIAHTANDNNNTNKGNR 390
Query: 117 RSSP-SLTD 124
SP + TD
Sbjct: 391 SVSPLASTD 399
>TAIR|locus:505006107 [details] [associations]
symbol:NOT2a "Negative on TATA less2a" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR007282 Pfam:PF04153 EMBL:CP002684 GO:GO:0005634
GO:GO:0006355 EMBL:AC007583 eggNOG:COG5601 KO:K12605
HOGENOM:HOG000005739 IPI:IPI00852321 RefSeq:NP_001077478.1
UniGene:At.42289 PaxDb:A8MR45 PRIDE:A8MR45
EnsemblPlants:AT1G07705.2 GeneID:837284 KEGG:ath:AT1G07705
TAIR:At1g07705 InParanoid:A8MR45 OMA:RMNDADL PhylomeDB:A8MR45
ProtClustDB:CLSN2693279 Genevestigator:A8MR45 Uniprot:A8MR45
Length = 614
Score = 134 (52.2 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 497 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 556
P+ P + Q NP + +TLF+ FY Q AA EL + W
Sbjct: 492 PSKVDPEFSVPQCYYAKNPPPLHQGLFAKLLVETLFYVFYSMPKDEAQLYAANELYNRGW 551
Query: 557 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 588
YH+++ WF R EP V + +E+G+Y FD
Sbjct: 552 FYHKEHRLWFIRIGEPLVKTNAYERGSYHCFD 583
Score = 53 (23.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 68/297 (22%), Positives = 101/297 (34%)
Query: 59 SINVPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS 118
S N+P LS S+ GSS N G + SP + S +GN G
Sbjct: 93 SSNIPV-ALSQMSH------GSSHGHSGLTNRGGLGVSPILGNVGSRMTSSMGNMVGGG- 144
Query: 119 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 178
T R + GG A S GN+G ++ V + LG+
Sbjct: 145 ----TMGRTLSSGGGLSIPSLGSRLNLAVNSGS-GNIGQNRMMGGVLPQGSPQVLSMLGN 199
Query: 179 S-----GMVQSLVSPLSN--RMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQ 231
S G+ Q+ V +++ M L ND T D NN + + R S G Q
Sbjct: 200 SYPSAGGLSQNHVQAMNSLSSMGLLNDMNSND-TSPFDINN--DFPQLTSR--PSSAGSQ 254
Query: 232 WRTGNSFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHS-NLLGMPLGGNKQFSSQ 290
+ G+ + Q G + I +E G+ + P+ + +
Sbjct: 255 GQLGSRLK------QGLGISPIVQQNQEFSIQNEDFPALPGYKGSSADYPMDLHHKEQLH 308
Query: 291 QNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSG 347
+N +L SQ S+ G LG + TS QQQ SS + G
Sbjct: 309 ENSVLMM-QSQQLSMGRSGGFNLG------GAYTSHRPQQQQQHAQAVSSSGVSLHG 358
Score = 51 (23.0 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 438 IGRRSVSDLG-AIGDSLSGATVSSGG 462
+G R S +G +G G T+SSGG
Sbjct: 129 VGSRMTSSMGNMVGGGTMGRTLSSGG 154
Score = 50 (22.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 22/67 (32%), Positives = 29/67 (43%)
Query: 278 GMPLGGNKQFSSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQ--PNPI 335
G+ L G+ FSS P ++SQ G+GL NS+T QQ
Sbjct: 353 GVSLHGSDIFSSSHPP----YHSQ---TGGAPGIGLR-SMNSANSITGMGYDQQLIQQYQ 404
Query: 336 HQQSSQQ 342
HQQ+S Q
Sbjct: 405 HQQNSAQ 411
Score = 47 (21.6 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 40 SSGVGSTASTPAVGPATPISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGP 92
SSG G S P++G +++N + + VLP GS V + N+ P
Sbjct: 151 SSGGG--LSIPSLGSRLNLAVNSGSGNIGQNRMMGGVLPQGSPQVLSMLGNSYP 202
Score = 44 (20.5 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 299 NSQGS-SISAQAGLGLGVQAPGMNSVTSASLQQQPNPI 335
N G+ ++ AG LG + +N V SA +QQQ I
Sbjct: 50 NIHGNFNVPNLAG-SLGSRNSSLNGVPSAGVQQQNGSI 86
>FB|FBgn0017550 [details] [associations]
symbol:Rga "Regena" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IEA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0046331 "lateral inhibition" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR007282 Pfam:PF04153
EMBL:AE014297 GO:GO:0005634 GO:GO:0005737 GO:GO:0007095
GO:GO:0006355 GO:GO:0006351 GO:GO:0046331 EMBL:U75467 GO:GO:0030014
eggNOG:COG5601 KO:K12605 GeneTree:ENSGT00390000001285 EMBL:AY094772
EMBL:BT025208 RefSeq:NP_524239.2 RefSeq:NP_730966.1 UniGene:Dm.2486
STRING:Q94547 PaxDb:Q94547 PRIDE:Q94547 EnsemblMetazoa:FBtr0078741
GeneID:40683 KEGG:dme:Dmel_CG2161 UCSC:CG2161-RA CTD:40683
FlyBase:FBgn0017550 InParanoid:Q94547 OMA:KVTNIPA OrthoDB:EOG459ZWX
PhylomeDB:Q94547 ChiTaRS:Rga GenomeRNAi:40683 NextBio:820039
Bgee:Q94547 GermOnline:CG2161 Uniprot:Q94547
Length = 585
Score = 109 (43.4 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 24/62 (38%), Positives = 30/62 (48%)
Query: 529 DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVY 586
D LFF FY Q +AA EL + WRYH + W R + N E+GT+ Y
Sbjct: 491 DLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY 550
Query: 587 FD 588
FD
Sbjct: 551 FD 552
Score = 77 (32.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 42/181 (23%), Positives = 65/181 (35%)
Query: 42 GVGSTASTPAVGPAT--PISINVPAQTLSNASNTSPVLP-GSSSVRGVFDNTGPISSSPP 98
G GS STPA+ T P N Q ++P+ P GS F + G +
Sbjct: 149 GGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTS 208
Query: 99 VNLTSSTKEEDVGNFPGRRSSPSLTDV--RVMGRGGXXXXXXXXXXXXXATAVPSNGNLG 156
+ ED PG ++S T+ V G GG T P N ++
Sbjct: 209 EQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGASTENHLD--GTEKPMN-SIV 265
Query: 157 AVPLVSDVAKRNILGAEERLGSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGET 216
S + N+ G +G +G+ ++ S + + G+ G G + N A
Sbjct: 266 VSGSASGSSGSNV-GV---VGGNGL-GAVGSGIGGLAVGGGGGAGSSGGGGVGGNAASGV 320
Query: 217 V 217
V
Sbjct: 321 V 321
>TAIR|locus:2174259 [details] [associations]
symbol:VIP2 "VIRE2 interacting protein 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0015074 "DNA integration" evidence=IMP]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0006351 GO:GO:0015074
eggNOG:COG5601 KO:K12605 EMBL:AB006705 EMBL:AK117230 EMBL:AF295433
IPI:IPI00536853 RefSeq:NP_568912.2 UniGene:At.24144 PaxDb:Q9FPW4
PRIDE:Q9FPW4 EnsemblPlants:AT5G59710.1 GeneID:836092
KEGG:ath:AT5G59710 TAIR:At5g59710 HOGENOM:HOG000005739
InParanoid:Q9FPW4 OMA:PEYLINM PhylomeDB:Q9FPW4
Genevestigator:Q9FPW4 Uniprot:Q9FPW4
Length = 614
Score = 132 (51.5 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 497 PAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 556
PA + + + P R S + + LF+ FY Q AA EL ++ W
Sbjct: 495 PAKSEVEFTVPNCYYATEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGW 554
Query: 557 RYHRKYNTWFQRHEEPKVANDEFEQGTYVYFD 588
YH++ WF R EP V +E+GTY Y D
Sbjct: 555 FYHKELRVWFFRVGEPLVRAATYERGTYEYLD 586
Score = 52 (23.4 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 46/192 (23%), Positives = 76/192 (39%)
Query: 66 TLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGN--FPGRR----SS 119
T N+S S G G F + S++ PVNL+ + G+ P R +
Sbjct: 64 TSRNSSMNSIPSAGVQQPNGSFSSGRFASNNLPVNLSQLSHGSSHGHSGIPNRGLNVVGN 123
Query: 120 PSLTDVRVMGRGGXX-XXXXXXXXXXXATAVPSNGN---LG-AVPLVSDVAKRNILGAEE 174
P + G GG +VP G LG + P +++ + N++G
Sbjct: 124 PGFSS-NANGVGGSIPGILSTSAGLSNRNSVPGMGISQLLGNSGPRITN-SMGNMVGGGN 181
Query: 175 RLGSSGMVQSLVSP-LSNRMILSQAAKGNDGTG-SIDSNNA--GETVAMAGRVFTPSMGM 230
LG + L P LS+R+ L+ N G+G ++ N G + +V + +G
Sbjct: 182 -LGRNISSGGLSIPGLSSRLNLA----ANSGSGLNVQGQNRMMGGVLPQGSQVMS-MLGN 235
Query: 231 QWRTGNSFQNQN 242
+ TG +QN
Sbjct: 236 SYHTGGGPLSQN 247
Score = 43 (20.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 37/164 (22%), Positives = 57/164 (34%)
Query: 177 GSSGMVQSLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 236
G SG+ ++ + N S A I S +AG ++ R P MG+ GN
Sbjct: 109 GHSGIPNRGLNVVGNPGFSSNANGVGGSIPGILSTSAG----LSNRNSVPGMGISQLLGN 164
Query: 237 SFQN-QNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQ-QNPL 294
S N G G + + G S+ L + + Q QN +
Sbjct: 165 SGPRITNSMGNMVGGGNLGRN------ISSGGLSIPGLSSRLNLAANSGSGLNVQGQNRM 218
Query: 295 LQQFNSQGSSISAQAG----LGLGVQAPG-MNSVTSASLQQQPN 333
+ QGS + + G G G + + SV + L PN
Sbjct: 219 MGGVLPQGSQVMSMLGNSYHTGGGPLSQNHVQSVNNMMLSDHPN 262
Score = 40 (19.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 320 MNSVTSASLQQQPN 333
MNS+ SA +QQ PN
Sbjct: 70 MNSIPSAGVQQ-PN 82
>DICTYBASE|DDB_G0284577 [details] [associations]
symbol:DDB_G0284577 "putative CCR4-NOT complex
subunit 2" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISS] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0030015 "CCR4-NOT core complex"
evidence=ISS] [GO:0016567 "protein ubiquitination" evidence=ISS]
InterPro:IPR007282 Pfam:PF04153 dictyBase:DDB_G0284577
GO:GO:0005634 GO:GO:0006355 GO:GO:0016567 EMBL:AAFI02000066
GO:GO:0030015 eggNOG:COG5601 KO:K12605 RefSeq:XP_638512.1
EnsemblProtists:DDB0237628 GeneID:8624662 KEGG:ddi:DDB_G0284577
OMA:HEEYQRK ProtClustDB:CLSZ2846720 Uniprot:Q54PG2
Length = 579
Score = 122 (48.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 510 PIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 569
P + +P F +++L +Y +TLF+ FY Q AA EL + WRYH++ W R
Sbjct: 433 PNLESPTF--KMNLFTY--ETLFYIFYSMPKDVLQLHAAIELYDRDWRYHKEGKIWLTRV 488
Query: 570 E--EPKVANDEFEQGTYVYFDFHI 591
+ EP + + FE G++ +FD I
Sbjct: 489 QGTEPNITST-FEVGSFFFFDVTI 511
Score = 60 (26.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 29/119 (24%), Positives = 49/119 (41%)
Query: 236 NSFQNQNEPGQ---FRGRTE-IAPDQREKFXXXXXXXXXXG----HSNLLGMPLGGNKQF 287
N QNQN+ Q FRG+ + + Q + +SN+ GMP GGN
Sbjct: 52 NQQQNQNQQNQQQNFRGQNQNMMGGQNQNNNNNNSSNINNNRVGNNSNINGMPTGGNMAT 111
Query: 288 SSQQNPLLQQFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMS 346
+ ++ N+ ++ + + P ++S++ QQ P P QQ Q +S
Sbjct: 112 NINNMNMMNNNNNTNNNNNGR---------P----ISSSNSQQPPPPPQQQQQPQQPLS 157
>POMBASE|SPCC4G3.15c [details] [associations]
symbol:not2 "CCR4-Not complex subunit Not2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0030015 "CCR4-NOT core
complex" evidence=ISO] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISO] InterPro:IPR007282 Pfam:PF04153 PomBase:SPCC4G3.15c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0006357 GO:GO:0000289 GO:GO:0030015 GO:GO:0006354
eggNOG:COG5601 HOGENOM:HOG000246523 PIR:T41361 RefSeq:NP_587823.2
STRING:P87240 EnsemblFungi:SPCC4G3.15c.1 GeneID:2538778
OrthoDB:EOG4TB7MJ NextBio:20799960 Uniprot:P87240
Length = 306
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 37/120 (30%), Positives = 55/120 (45%)
Query: 501 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 560
P Y V P PA + + + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPP----PAISK---IFQFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 561 KYNTWFQRHE--EPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>SGD|S000006276 [details] [associations]
symbol:NOT5 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IPI] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0030015 "CCR4-NOT core complex" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IDA;IPI]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0016567 "protein
ubiquitination" evidence=IMP] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR007207 InterPro:IPR007282 InterPro:IPR012270
Pfam:PF04065 Pfam:PF04153 PIRSF:PIRSF005290 SGD:S000006276
GO:GO:0005634 GO:GO:0005737 GO:GO:0016567 EMBL:Z71255 EMBL:BK006949
GO:GO:0006368 EMBL:U51033 EMBL:Z49219 GO:GO:0032968 GO:GO:0000289
GO:GO:0030015 eggNOG:COG5665 HOGENOM:HOG000184850
GeneTree:ENSGT00390000014743 GO:GO:0031087 OrthoDB:EOG4NW2V3
EMBL:AY692887 PIR:S54093 RefSeq:NP_015397.1
ProteinModelPortal:Q12514 DIP:DIP-2257N IntAct:Q12514
MINT:MINT-420084 STRING:Q12514 PaxDb:Q12514 PeptideAtlas:Q12514
EnsemblFungi:YPR072W GeneID:856186 KEGG:sce:YPR072W CYGD:YPR072w
OMA:HPTSIFF NextBio:981366 Genevestigator:Q12514 GermOnline:YPR072W
Uniprot:Q12514
Length = 560
Score = 123 (48.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 526 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRH-EEPKVANDEFEQGT 583
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E+ + E+ +
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEES 531
Query: 584 YVYFDF 589
+ YFD+
Sbjct: 532 WRYFDY 537
Score = 47 (21.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 27 SNSDVAARTP--PAKSSGVGSTASTPAVGPATPISINVPAQTLSNAS 71
S SD A TP P S S +STP TP+S + P T+ + S
Sbjct: 256 SISD-RATTPIAPGVESASQSISSTP-----TPVSTDTPLHTVKDDS 296
>WB|WBGene00019273 [details] [associations]
symbol:H43E16.1 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] eggNOG:NOG12793
GeneTree:ENSGT00700000104630 EMBL:FO080627 RefSeq:NP_495358.1
ProteinModelPortal:Q9N5K0 PaxDb:Q9N5K0 EnsemblMetazoa:H43E16.1
GeneID:174101 KEGG:cel:CELE_H43E16.1 UCSC:H43E16.1 CTD:174101
WormBase:H43E16.1 InParanoid:Q9N5K0 OMA:NVVHSAG NextBio:882515
Uniprot:Q9N5K0
Length = 1203
Score = 128 (50.1 bits), Expect = 0.00024, P = 0.00024
Identities = 81/336 (24%), Positives = 118/336 (35%)
Query: 3 ATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISINV 62
+T+ ST Q S + SQ + PP SS +T ST + T +S+
Sbjct: 622 STIGSTVTQAPSSSTSMGPSPSQSTAGSTMTSAPPVTSSSSANTGSTSS---GTTVSV-- 676
Query: 63 PAQTLSNASNTSPVLPGSSSVRGVFDNTGPISS-SPPVNLTSS---TKEEDVGNFPGRRS 118
QT +S TSPV SS + +G SS VN SS T+ +
Sbjct: 677 --QTTQVSSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRSTASQG 734
Query: 119 SPSLTDVRVMGRGGXXXXXXXXXXXXXATAVPSNGNLGAVPLVSDVAKRNILGAEERLGS 178
S S + G +T+VPS+ GA S V + + L S
Sbjct: 735 SSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSS--TGATSSGSTVGSSTMGSTQSSLPS 792
Query: 179 SGMVQ--SLVSPLSNRMILSQAAKGNDGTGSIDSNNAGETVAMAGRVFTPSMGMQWRTGN 236
S M S S ++N++ S + G T I S+ A + +G+ + G +
Sbjct: 793 STMTNTGSTGSTVTNQLA-SSSTYGASSTEPIASSTANPGSSTSGQTAVTTQG-----SS 846
Query: 237 SFQNQNEPGQFRGRTEIAPDQREKFXXXXXXXXXXGHSNLLGMPLGGNKQFSSQQNPLLQ 296
S Q + G G T P + G G ++Q + Q
Sbjct: 847 STQTNSNTGS-TGSTVTNPPVSSSTSGSSSTQPIASSTANPGSSTSGTTVVTTQGSSSTQ 905
Query: 297 QFNSQGSSISAQAGLGLGVQAPGMNSVTSASLQQQP 332
+ GS+ G V P S TSAS QP
Sbjct: 906 TNPNTGST-------GSTVTQPSAFSSTSASSSTQP 934
>WB|WBGene00003825 [details] [associations]
symbol:ntl-2 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] InterPro:IPR007282 Pfam:PF04153
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006355 GO:GO:0040011 GO:GO:0040018 GO:GO:0019915
GO:GO:0040035 HOGENOM:HOG000246523 KO:K12605
GeneTree:ENSGT00390000001285 EMBL:FO080154 GeneID:173773
KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1 CTD:173773 NextBio:881031
PIR:T15310 RefSeq:NP_494772.1 ProteinModelPortal:Q10923
DIP:DIP-25406N IntAct:Q10923 MINT:MINT-1053402 STRING:Q10923
PRIDE:Q10923 EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 578
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
>UNIPROTKB|Q10923 [details] [associations]
symbol:ntl-2 "Protein NTL-2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007282 Pfam:PF04153 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0006355
GO:GO:0040011 GO:GO:0040018 GO:GO:0019915 GO:GO:0040035
HOGENOM:HOG000246523 KO:K12605 GeneTree:ENSGT00390000001285
EMBL:FO080154 GeneID:173773 KEGG:cel:CELE_B0286.4 UCSC:B0286.4a.1
CTD:173773 NextBio:881031 PIR:T15310 RefSeq:NP_494772.1
ProteinModelPortal:Q10923 DIP:DIP-25406N IntAct:Q10923
MINT:MINT-1053402 STRING:Q10923 PRIDE:Q10923
EnsemblMetazoa:B0286.4a.1 EnsemblMetazoa:B0286.4a.2
WormBase:B0286.4a InParanoid:Q10923 OMA:THNHIRD ArrayExpress:Q10923
Uniprot:Q10923
Length = 444
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 33/99 (33%), Positives = 43/99 (43%)
Query: 521 LSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVAND--E 578
L L+ D LF+ FY N Q AA EL + WR+H+ W R + V
Sbjct: 263 LRLNKVSEDVLFYLFYNCPNEIYQVAAACELYAREWRFHKSEQVWLTRSQYGGVKEQTGN 322
Query: 579 FEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+E+G Y FD Q W ++I E EY LED
Sbjct: 323 YEKGHYNVFD--------QMQW-RKIPKELKLEYKELED 352
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.127 0.365 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 621 560 0.00099 119 3 11 23 0.48 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 613 (65 KB)
Total size of DFA: 294 KB (2152 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 55.42u 0.08s 55.50t Elapsed: 00:00:03
Total cpu time: 55.43u 0.08s 55.51t Elapsed: 00:00:03
Start: Sat May 11 10:40:55 2013 End: Sat May 11 10:40:58 2013