BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007007
(621 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3
PE=1 SV=1
Length = 751
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 665
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 666 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 723 IYFDY--------EKWGQRKKEGFTFEYRYLED 747
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3
PE=1 SV=1
Length = 753
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 100/153 (65%), Gaps = 13/153 (8%)
Query: 465 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLD 524
+Q+Y M E+A++ +P P DSER R Y+PR+P TPP + Q+ P F++RLS
Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-- 667
Query: 525 SYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTY 584
T+TLFF FYY + T QYLAAK LKKQSWR+H KY WFQRHEEPK DEFEQGTY
Sbjct: 668 ---TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724
Query: 585 VYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+YFD+ W QR K FTFEY YLED
Sbjct: 725 IYFDY--------EKWGQRKKEGFTFEYRYLED 749
>sp|O13870|NOT3_SCHPO General negative regulator of transcription subunit 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not3 PE=1 SV=2
Length = 640
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 99/173 (57%), Gaps = 12/173 (6%)
Query: 446 LGAIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYP 505
L + ++L+ + G D+ + L + +P D+ + + YIP+ P P YP
Sbjct: 475 LKDLVNALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYP 534
Query: 506 QVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTW 565
Q P+ + E + DTLF+ FYY+ TYQQY+A +ELKKQSWR+H+KY TW
Sbjct: 535 QQPLPLFDSSEMTELV-----DPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTW 589
Query: 566 FQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 618
FQRHEEPK+ DEFE G+Y YFDF + W QR K +F F Y YLED+
Sbjct: 590 FQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 635
>sp|Q52JK6|VIP2_NICBE Probable NOT transcription complex subunit VIP2 (Fragment)
OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
Length = 603
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 25/212 (11%)
Query: 412 AQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSLSGATVSSGGMHDQMYNMQ 471
Q RD L Q + P G LG++ +SD +L G +++ G+ N+
Sbjct: 412 GQPFRDQSLKSMQSQVAPDPFGMLGLLSVIRMSDPDLTSLAL-GIDLTTLGL-----NLN 465
Query: 472 MLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTL 531
E+ + P E A+ P T P + P N A++ + LD TL
Sbjct: 466 SAENLYKTFGSPWSDEPAKG----DPEFTVPQCYYAKQPPPLNQAYFSKFQLD-----TL 516
Query: 532 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR--HEEPKVANDEFEQGTYVYFDF 589
F+ FY Q AA EL + W YHR++ WF R + EP V + +E+G+Y+ FD
Sbjct: 517 FYIFYSMPKDEAQLYAANELYNRGWFYHREHRLWFMRVANMEPLVKTNAYERGSYICFD- 575
Query: 590 HIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 621
+ W K F LE ++
Sbjct: 576 -------PNTWETIHKDNFVLHCEMLEKRPVL 600
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2
PE=1 SV=1
Length = 540
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 497 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 548
P + P PQ V + ++N ++L+ L YG D LF+ +Y Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461
Query: 549 KELKKQSWRYHRKYNTWFQRH--EEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 606
EL + WRYH++ W R EP + + +E+GTY +FD W +++
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512
Query: 607 EFTFEYNYLEDE 618
EF EY+ LE+
Sbjct: 513 EFHLEYDKLEER 524
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2
PE=2 SV=2
Length = 540
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 497 PAVTPPSYPQ-----VQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAA 548
P + P PQ V + ++N ++L+ L YG D LF+ +Y Q LAA
Sbjct: 402 PWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAA 461
Query: 549 KELKKQSWRYHRKYNTWFQRH--EEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKT 606
EL + WRYH++ W R EP + + +E+GTY +FD W +++
Sbjct: 462 VELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDC--------LNW-RKVAK 512
Query: 607 EFTFEYNYLEDE 618
EF EY+ LE+
Sbjct: 513 EFHLEYDKLEER 524
>sp|Q9FPW4|VIP2_ARATH Probable NOT transcription complex subunit VIP2 OS=Arabidopsis
thaliana GN=VIP2 PE=1 SV=2
Length = 614
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 520 RLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEF 579
R S + + LF+ FY Q AA EL ++ W YH++ WF R EP V +
Sbjct: 518 RASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVGEPLVRAATY 577
Query: 580 EQGTYVYFD 588
E+GTY Y D
Sbjct: 578 ERGTYEYLD 586
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=CDC36 PE=1 SV=1
Length = 191
Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 76/170 (44%), Gaps = 44/170 (25%)
Query: 473 LESAFYKLPQPKDS--------------ERARSYI-PRHPAVTPPSY---PQVQAPIVSN 514
L S Y L P+DS E +RS + PR TP S+ P V V+
Sbjct: 34 LSSMLYSLGIPRDSQDHRVLDTFQSPWAETSRSEVEPRF--FTPESFTNIPGVLQSTVTP 91
Query: 515 PAF------WERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR 568
P F +R++L + +TLFF FY T Q L EL+K++WRYH+ W +
Sbjct: 92 PCFNSIQNDQQRVAL--FQDETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTK 149
Query: 569 --HEEPKVANDEF-EQGTYVYFDFHIANDDLQHGW--CQRIKTEFTFEYN 613
EP V+ D E+G+YV+FD W CQR +F YN
Sbjct: 150 DPMMEPIVSADGLSERGSYVFFD--------PQRWEKCQR---DFLLFYN 188
>sp|P87240|NOT2_SCHPO General negative regulator of transcription subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=not2 PE=1 SV=2
Length = 306
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 501 PPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHR 560
P Y V P + F + +TLF+ FY Q AA+EL ++WR+H+
Sbjct: 196 PACYKNVNPPPAISKIF-------QFSDETLFYIFYTMPRDVMQEAAAQELTNRNWRFHK 248
Query: 561 KYNTWFQRH--EEPKVANDEFEQGTYVYFD-FHIANDDLQHGWCQRIKTEFTFEYNYLED 617
+ W +P +FE+G Y++FD H W +RIK +F Y LED
Sbjct: 249 ELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIH---------W-KRIKKDFLLMYAALED 298
>sp|Q94547|RGA_DROME Regulator of gene activity OS=Drosophila melanogaster GN=Rga PE=2
SV=2
Length = 585
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 500 TPPSYPQVQAPIVSNPAFWERLS---LDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 556
PP Y + N A ++L+ L D LFF FY Q +AA EL + W
Sbjct: 466 VPPEY-------LINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREW 518
Query: 557 RYHRKYNTWFQRHEEPKV----ANDEFEQGTYVYFD 588
RYH + W R P + N E+GT+ YFD
Sbjct: 519 RYHVEEKIWITR--IPGIDQYEKNGTKERGTFYYFD 552
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT5 PE=1 SV=1
Length = 560
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 526 YGTDTLFFAFYYQQNTYQQYLAAKEL-KKQSWRYHRKYNTWFQRHEE---PKVANDEFEQ 581
+ DTLFF FY+ Q +Y+Q+LAA+EL K ++W +++ W+ + E P + E+
Sbjct: 472 FDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKS--EE 529
Query: 582 GTYVYFDF 589
++ YFD+
Sbjct: 530 ESWRYFDY 537
>sp|P06102|NOT3_YEAST General negative regulator of transcription subunit 3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NOT3 PE=1 SV=2
Length = 836
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 530 TLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDF 589
+LF+ +Y+ ++ +A K L ++ W+ + WF R E K N+ E G Y F
Sbjct: 707 SLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDYKIFKL 766
Query: 590 HIANDDLQHGWCQRIKTEFTFEYNYLE 616
DD W K F +Y++L+
Sbjct: 767 ----DD----WTVIDKINFRLDYSFLQ 785
>sp|Q32MK0|MYLK3_HUMAN Myosin light chain kinase 3 OS=Homo sapiens GN=MYLK3 PE=2 SV=3
Length = 819
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 2 PATVISTHQQVTSVQEQGEDTASQDSNSDVAARTPPAKSSGVGSTASTPAVGPATPISIN 61
P V+ST + +E GE++ D A R PP ++SG+G+ + V P +
Sbjct: 171 PKHVLSTSGVQSDAREPGEESQKADVLEGTAERLPPIRASGLGADPAQAVVSPGQGDGVP 230
Query: 62 VPAQTLSNASNTSPVLPGSSSVRGVFDNTGPISSSPPVNLTSSTKEEDVGNFPGRRS--S 119
PAQ PG + + P +P NL + ++ PGR + S
Sbjct: 231 GPAQ----------AFPGHLPLPTKVEAKAP--ETPSENLRTGL---ELAPAPGRVNVVS 275
Query: 120 PSLTDVRVMGRGGLSSQPSSSIPLSSAT 147
PSL G+G SS+P PL T
Sbjct: 276 PSLEVAPGAGQGASSSRPDPE-PLEEGT 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 238,118,097
Number of Sequences: 539616
Number of extensions: 10624722
Number of successful extensions: 33630
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 525
Number of HSP's that attempted gapping in prelim test: 31062
Number of HSP's gapped (non-prelim): 2142
length of query: 621
length of database: 191,569,459
effective HSP length: 124
effective length of query: 497
effective length of database: 124,657,075
effective search space: 61954566275
effective search space used: 61954566275
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)