Query 007007
Match_columns 621
No_of_seqs 194 out of 399
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 17:37:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2150 CCR4-NOT transcription 100.0 2.2E-40 4.8E-45 356.1 17.9 271 308-618 290-574 (575)
2 PF04153 NOT2_3_5: NOT2 / NOT3 100.0 2.6E-39 5.7E-44 295.1 10.7 128 476-616 1-134 (134)
3 COG5665 NOT5 CCR4-NOT transcri 100.0 3.5E-35 7.5E-40 305.2 7.1 126 479-618 421-546 (548)
4 COG5601 CDC36 General negative 100.0 2E-33 4.4E-38 262.1 1.8 163 435-616 6-172 (172)
5 KOG2151 Predicted transcriptio 99.5 3.9E-15 8.4E-20 153.3 3.6 126 411-556 182-312 (312)
6 KOG2151 Predicted transcriptio 99.1 5.9E-11 1.3E-15 122.8 3.5 133 448-617 37-175 (312)
7 PF05523 FdtA: WxcM-like, C-te 37.6 24 0.00053 32.8 2.3 33 526-569 29-61 (131)
8 PRK02220 4-oxalocrotonate taut 19.2 74 0.0016 25.0 1.7 27 248-281 10-36 (61)
9 KOG1885 Lysyl-tRNA synthetase 17.9 1E+02 0.0022 35.6 2.9 19 255-274 487-505 (560)
10 COG3109 ProQ Activator of osmo 15.0 1.3E+02 0.0029 30.7 2.7 54 499-561 20-73 (208)
No 1
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=2.2e-40 Score=356.14 Aligned_cols=271 Identities=38% Similarity=0.595 Sum_probs=192.6
Q ss_pred cccccceeccCCCccccccccccCCCCcCcCcccceeeccCC--------------CCcccCcccccCCCCCCCCCCCCC
Q 007007 308 QAGLGLGVQAPGMNSVTSASLQQQPNPIHQQSSQQTLMSGGQ--------------KDADVSHLKVEEPQQPQNLPEEST 373 (621)
Q Consensus 308 q~~~g~g~q~~~~~~~~s~~~~~~p~~~~~~~~q~~~~~~~~--------------k~~~~~~~~~~~~~~~~~~~~d~~ 373 (621)
|++.++|+++++++.+++|++...-|++|+.-.|...++... +.+-+++...-..|-+.+.|+++.
T Consensus 290 ~~~~~~~~~~~s~~A~aaA~~~~~~~s~~~~~qq~~~~~s~~~P~~~~p~~~~~~~~~st~~~p~~p~~q~~~~~P~~s~ 369 (575)
T KOG2150|consen 290 HNGPPIGIDASSSAAPSGAVLAKGSNGQHQSPQQLRIPLSMPPPHSPTPSLKRIQHKVSTLDGPRTPPEQSEENTPLSSA 369 (575)
T ss_pred cCCCccccCCCccccchhhhcccccccCCCccccccccCCCCCCCCCCccccchhhccccccCCCCCcccccccChhhhc
Confidence 899999999999999999999999999998877777552100 111111111001111122333222
Q ss_pred CcccCCCCCCCCccccccCCCcccccCCCCCcccccCcccccCCCCCCCCCCCCCCCCCCCcccccccCCCCccccccCc
Q 007007 374 PESASSPGLGKNLIHEDDLKAPYAIDSSTGVSASLTEPAQVVRDTDLSPGQPLQSSQPSGGLGVIGRRSVSDLGAIGDSL 453 (621)
Q Consensus 374 ~es~~~~g~~~~~~~~d~~~~~~~~d~p~~~~~s~~e~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~RmsdpDL~AlG~DL 453 (621)
--.+.. .. -.|.|++-...+..++.-..+..+..+..++..+--.+...+|...-||+.
T Consensus 370 k~~~~~-----s~------------~~~~~vp~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~---- 428 (575)
T KOG2150|consen 370 KLQASK-----SE------------SPPKGVPELEEEAAASTLSPDSSEPASANTPLSSKEQHSPFELGLSPLGVQ---- 428 (575)
T ss_pred hhccCc-----cc------------CCCCCCCccccccccCCCCCCccccccccCCCCccccccchhhcccccccc----
Confidence 211110 00 012222222222222221222222222222221111112112222222221
Q ss_pred cccccccCCcCccchhhhhHHHHhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEE
Q 007007 454 SGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFF 533 (621)
Q Consensus 454 T~~~~tlG~~~d~lLnLnslEasy~tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqKiKm~kfs~ETLFY 533 (621)
.+++++++..+.++|.++..++.|.|+|+++.|.|++|+.+|.+|++++++.+++..+|+| |+.|||||
T Consensus 429 ------~~~~~e~i~~~~~~e~a~~~~~~psdsE~pq~y~pk~p~~tp~~~~q~~~~~~ds~~~~~r-----l~~dTLFf 497 (575)
T KOG2150|consen 429 ------SEITNEQIRFLYALEAACKLVPIPSDSEKPQGYLPKTPLPTPSYFPQTPPSLTDSTEITER-----LDPDTLFF 497 (575)
T ss_pred ------ccccccccchHHHHHhhhccCCCCchhhcccCCCCCCCCCCCccCCCCCCcccchhhHHhh-----ccccceee
Confidence 3456899999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EeecCCCcHHHHHHHHHHhhccceeecccceeeecccCCccCCCccceeeEEEeccccCcccccccccceeccCeeeech
Q 007007 534 AFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYN 613 (621)
Q Consensus 534 IFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~~ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~qR~K~nFtfeY~ 613 (621)
||||++|+++||+||+||++|+||||++|.+||+|+.|||.+|+.||+|+|+|||++ .||+|+|.+|+|+|.
T Consensus 498 iFY~~qgt~eQylAaKeLkk~sWrfhkky~tWFqR~~EpK~itd~~E~G~y~yFD~~--------~W~qrkK~dFtfeY~ 569 (575)
T KOG2150|consen 498 IFYYQQGTYEQYLAAKELKKRSWRFHKKYTTWFQRHEEPKNITDIYEQGDYRYFDYK--------DWSQRKKIDFTFEYQ 569 (575)
T ss_pred EEeeecchHHHHHHHHHHhhcceeEeecceeEeeeccCccchhhhhhcCceEEEehh--------Hhhhhhccceeeehh
Confidence 999999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred hhhhh
Q 007007 614 YLEDE 618 (621)
Q Consensus 614 ~LE~r 618 (621)
|||+.
T Consensus 570 yLE~~ 574 (575)
T KOG2150|consen 570 YLEDS 574 (575)
T ss_pred hccCC
Confidence 99985
No 2
>PF04153 NOT2_3_5: NOT2 / NOT3 / NOT5 family; InterPro: IPR007282 NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=2.6e-39 Score=295.08 Aligned_cols=128 Identities=45% Similarity=0.910 Sum_probs=115.3
Q ss_pred HhhcCCCCCCCCcC----CCCC-CCCCCCCCCCCCCCCCCC-CCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHH
Q 007007 476 AFYKLPQPKDSERA----RSYI-PRHPAVTPPSYPQVQAPI-VSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAK 549 (621)
Q Consensus 476 sy~tfPsPwDsEpp----R~Y~-PrnP~~tP~cYPq~PpP~-ldnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAk 549 (621)
||.+|.+||++.++ +.|. |+++..+|.|||+.+++. ++++.+++| |++||||||||+||||++|++||+
T Consensus 1 L~~sf~sp~~~~~~~~~~~~y~~P~~~~~~~~~~p~~p~~~~~~~~~~~~k-----~~~eTLFyiFY~~p~~~~Q~~AA~ 75 (134)
T PF04153_consen 1 LYSSFASPPSDSDSRQQEPQYQIPSCYLPTPSSYPQRPPPIILDSPEKFQK-----FSEETLFYIFYYMPGDYQQLLAAK 75 (134)
T ss_pred CccccCCCCCCCCCCCCCCCCCCCCCcCcCccccCCCcCcccccchHHHhh-----cCCceEEEEEeecCCcHHHHHHHH
Confidence 46778888876543 5564 887777899999988877 677777777 999999999999999999999999
Q ss_pred HHhhccceeecccceeeecccCCccCCCccceeeEEEeccccCcccccccccceeccCeeeechhhh
Q 007007 550 ELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLE 616 (621)
Q Consensus 550 EL~kRgWRYHKe~k~WF~R~~ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~qR~K~nFtfeY~~LE 616 (621)
||++|||||||++++||+|+++++++++.+|+|+|+|||++ +|++++|+||+|+|++||
T Consensus 76 eL~~R~Wryhk~~~~W~~r~~~~~~~~~~~e~g~y~~FD~~--------~W~~~~k~~f~~~y~~LE 134 (134)
T PF04153_consen 76 ELYKRGWRYHKEYKTWFQRDSEPKPITEQYERGSYVYFDPE--------SWEKRRKKNFTFDYSDLE 134 (134)
T ss_pred HHHHCCcEEecCcCEEeeECCCCCccccceeeeeEEEechH--------HhcCcchhccEEeHHHcC
Confidence 99999999999999999999999999999999999999996 799999999999999998
No 3
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=100.00 E-value=3.5e-35 Score=305.16 Aligned_cols=126 Identities=44% Similarity=0.879 Sum_probs=118.3
Q ss_pred cCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhcccee
Q 007007 479 KLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRY 558 (621)
Q Consensus 479 tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRY 558 (621)
..|.--|.+ +.|+|+.|+.+|.+||+.|++.|++..+|.+ |+.||||||||+.+|+|+||+||+||++|+|||
T Consensus 421 ~~Pn~~D~~--KkY~P~~P~~~Ps~~P~~PL~~F~S~~if~k-----~D~DTLFfiFY~~~GTyQQY~Aa~eLKk~SWRF 493 (548)
T COG5665 421 LTPNENDTD--KKYKPGKPSKAPSKKPDDPLSRFSSARIFMK-----FDLDTLFFIFYHYQGTYQQYLAARELKKRSWRF 493 (548)
T ss_pred ecCCcchhh--hccCCCCCCCCCCCCCCCccccccHHHHHHh-----cCccceEEEeeeccchHHHHHHHHHHHhhhhhh
Confidence 445555555 4899999999999999999999999999998 999999999999999999999999999999999
Q ss_pred ecccceeeecccCCccCCCccceeeEEEeccccCcccccccccceeccCeeeechhhhhh
Q 007007 559 HRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 618 (621)
Q Consensus 559 HKe~k~WF~R~~ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~qR~K~nFtfeY~~LE~r 618 (621)
||+|.+||+|+.||+.+|++||+|+|.||||+ ..|..|.|.+|+|+|.|||+.
T Consensus 494 HkKY~TWFQR~~EPK~IT~~~E~Gs~ryFDy~-------~~W~~rKK~DF~F~Y~YLE~~ 546 (548)
T COG5665 494 HKKYRTWFQREIEPKPITGKSEEGSWRYFDYK-------KSWLARKKNDFVFNYEYLEKL 546 (548)
T ss_pred hcchhhhhhhhcccccccCccccCceeEeecc-------chHHHhhcccceeehhhhhhc
Confidence 99999999999999999999999999999998 689999999999999999974
No 4
>COG5601 CDC36 General negative regulator of transcription subunit [Transcription]
Probab=99.97 E-value=2e-33 Score=262.10 Aligned_cols=163 Identities=23% Similarity=0.454 Sum_probs=132.5
Q ss_pred cccccccCCCCcc--ccccCccccccccCCcCccchhhhhHHHHhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 007007 435 LGVIGRRSVSDLG--AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIV 512 (621)
Q Consensus 435 LGvI~RmsdpDL~--AlG~DLT~~~~tlG~~~d~lLnLnslEasy~tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~l 512 (621)
+-++ |+.|.+++ .||.||...-.++| -.-...+....+|-+||+...-++..|+ +.+|.||+..|.|..
T Consensus 6 ~pl~-~ied~e~s~~~lg~Dl~s~~~sl~------~p~~~qDr~~~t~~sPwae~tkk~vqp~--f~lP~cy~n~p~pp~ 76 (172)
T COG5601 6 KPLE-QIEDEEQSIHDLGKDLLSEILSLV------RPKKYQDRPSTTLYSPWAESTKKPVQPM--FMLPNCYPNAPNPPI 76 (172)
T ss_pred hhHH-HHHHhhhhHHHhchhHHHHHHhhc------CcccccccccccccChhhhhccCcccch--hcCccccCCCCCCCc
Confidence 3455 88888887 79999992233333 1113345566778999998854444432 679999999987654
Q ss_pred CChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhccceeecccceeeeccc--CCccCCCccceeeEEEeccc
Q 007007 513 SNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFH 590 (621)
Q Consensus 513 dnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~~--ePkv~Td~yErGsY~YFD~~ 590 (621)
-+.. .+.+||++|++||||||||.+|+|.+|..|+.||.+|+|||||.+|+|++.+. +|.+.++..|||+|++||+.
T Consensus 77 f~~~-~~~~k~~~f~dETLFyiFY~~P~dvlQe~ay~el~krnwrfhK~lk~wlT~~p~m~P~~~~~~~ergsyvfFDP~ 155 (172)
T COG5601 77 FKVN-IEDMKMDNFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWLTFNPGMSPATADHVKERGSYVFFDPF 155 (172)
T ss_pred eecc-hHHHHHHhhccceeEEEEeeCCcHHHHHHHHHHHHHhchhhhhhheeeeccCCCCCccccccccccceEEEEcch
Confidence 4444 45689999999999999999999999999999999999999999999999984 78889999999999999996
Q ss_pred cCcccccccccceeccCeeeechhhh
Q 007007 591 IANDDLQHGWCQRIKTEFTFEYNYLE 616 (621)
Q Consensus 591 ~~~~~~~~~W~qR~K~nFtfeY~~LE 616 (621)
.|+ |++.||.|+|+.++
T Consensus 156 --------~W~-k~~~dfll~y~av~ 172 (172)
T COG5601 156 --------SWS-KVSLDFLLDYKAVR 172 (172)
T ss_pred --------hHH-HHhHHHHHHHHhhC
Confidence 896 89999999999875
No 5
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.52 E-value=3.9e-15 Score=153.28 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=95.6
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCccccc--ccCCCCc--c-ccccCccccccccCCcCccchhhhhHHHHhhcCCCCCC
Q 007007 411 PAQVVRDTDLSPGQPLQSSQPSGGLGVIG--RRSVSDL--G-AIGDSLSGATVSSGGMHDQMYNMQMLESAFYKLPQPKD 485 (621)
Q Consensus 411 ~~Q~~Rd~~l~~~Q~~qs~~~~GLLGvI~--RmsdpDL--~-AlG~DLT~~~~tlG~~~d~lLnLnslEasy~tfPsPwD 485 (621)
.+|...|..+......+....+|+.|++. |..+.|- . .+|+||+ ++| |+|+..|.++.+|-.||.
T Consensus 182 g~q~~Pdg~v~niP~~m~t~~fgm~gLL~~ir~~~~~g~~~l~lg~Dl~----~ll------lsla~~~di~~~F~~P~~ 251 (312)
T KOG2151|consen 182 GSQPTPDGYVPNIPSGMETGQFGMKGLLTLIRGAQGEGQTTLPLGADLN----SLL------LSLAVPEDIIPTFQGPWG 251 (312)
T ss_pred ccccCCCCcccCCCcchhhhhhhhhcchhhheecccCcceeeccCCChh----hhh------ccccccccccccccCCcc
Confidence 33444555554334444444565555554 6766652 2 8999999 999 999999999999999999
Q ss_pred CCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhccc
Q 007007 486 SERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSW 556 (621)
Q Consensus 486 sEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgW 556 (621)
+++++. . ..+.+|.||+.++++.. . .|+.+|++|||||+||.+++|.+|..||.||.+|+|
T Consensus 252 ~~P~~~-~--~~~~lp~~y~~v~~~~~-~------~~~~~~~dE~lff~fyt~~~d~~Q~~aa~el~~r~w 312 (312)
T KOG2151|consen 252 EVPTSQ-E--ASFNLPNCYLNVNPKLQ-F------SKIDQFQDETLFYIFYTFPGDVMQELAAAELLKRNW 312 (312)
T ss_pred cCCccc-c--hhhhcchhhhccCCccc-h------HHHhhhcccceeeeeccCCcchhhhhHHHHhhccCC
Confidence 999883 2 24789999998544322 1 136679999999999999999999999999999999
No 6
>KOG2151 consensus Predicted transcriptional regulator [Transcription; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.07 E-value=5.9e-11 Score=122.80 Aligned_cols=133 Identities=28% Similarity=0.563 Sum_probs=105.8
Q ss_pred ccccCccccccccCCcCccchhhhhH-HHHhhcCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCChhHHhh---hcc
Q 007007 448 AIGDSLSGATVSSGGMHDQMYNMQML-ESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWER---LSL 523 (621)
Q Consensus 448 AlG~DLT~~~~tlG~~~d~lLnLnsl-Easy~tfPsPwDsEppR~Y~PrnP~~tP~cYPq~PpP~ldnp~~fqK---iKm 523 (621)
++|.||+ ++| +++|.- -.+|.+|..||++++.+.- .....|.||...+ .++.+ ..+
T Consensus 37 ~~~~d~~----~lg------~~~n~~~~~~~~~f~g~~~s~~l~~l---~~~~~P~~~~~~~-------~~~~~~~~~~~ 96 (312)
T KOG2151|consen 37 ALGYDLT----TLG------LNLNLSERKLLMNFAGPWASEPLRHL---LDTKVPEEYMTHR-------HLRSKLPSLRL 96 (312)
T ss_pred eeccchh----ccC------cccccccccccccccCcCCCcccccc---ccccCccccccch-------hhhhcCCcccc
Confidence 8999999 899 555533 3778889999999998842 2356899998322 22222 136
Q ss_pred CCCCCceeEEEeecCCCcHHHHHHHHHHhhccceeecccceeeeccc--CCccCCCccceeeEEEeccccCccccccccc
Q 007007 524 DSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHE--EPKVANDEFEQGTYVYFDFHIANDDLQHGWC 601 (621)
Q Consensus 524 ~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~~--ePkv~Td~yErGsY~YFD~~~~~~~~~~~W~ 601 (621)
+++...-|||+||++| |.||..|.||||++.+.|+.+.. .++..++.|+.|.|..||.. .|+
T Consensus 97 ~kv~~~~l~~~~~~~P--------a~e~~~r~~~~~~~~~~~l~~s~yg~~~~~~~~~~~g~~~~~~q~--------s~~ 160 (312)
T KOG2151|consen 97 NKVGERVLFYLFYNLP--------AGELQAREWRFHKSEQVWLTRSQYGGVKELPGNYMKGHFNVFDQM--------SWR 160 (312)
T ss_pred cccccccceeeeccCC--------CcccccccccccccccccccccccCCccccccchhhchhccccch--------hhh
Confidence 6799999999999999 99999999999999999999974 56677789999999999986 786
Q ss_pred ceeccCeeeechhhhh
Q 007007 602 QRIKTEFTFEYNYLED 617 (621)
Q Consensus 602 qR~K~nFtfeY~~LE~ 617 (621)
.+-.+-.++|..+|+
T Consensus 161 -~~~ke~~l~~~~~~~ 175 (312)
T KOG2151|consen 161 -KIPKELKLAYSDLED 175 (312)
T ss_pred -hcccchhhccccccc
Confidence 566677788888776
No 7
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=37.56 E-value=24 Score=32.81 Aligned_cols=33 Identities=15% Similarity=0.556 Sum_probs=19.0
Q ss_pred CCCceeEEEeecCCCcHHHHHHHHHHhhccceeecccceeeecc
Q 007007 526 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 569 (621)
Q Consensus 526 fs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~ 569 (621)
|...-.||||-.-++ . .|||.+|++...||.-.
T Consensus 29 f~i~rvy~i~~~~~~-~----------~RG~H~Hk~~~~~~~~l 61 (131)
T PF05523_consen 29 FEIKRVYYIYNVPPG-V----------IRGWHAHKKTTQWFIVL 61 (131)
T ss_dssp S---EEEEEES--SS-------------EEEEEESS--EEEEEE
T ss_pred CCccEEEEEEcCCCC-C----------cccccccccccEEEEEE
Confidence 455566776655554 2 59999999999999765
No 8
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=19.15 E-value=74 Score=25.02 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.0
Q ss_pred ccccccCchhHHHHHHHHHHHHHhcccccCCCCC
Q 007007 248 RGRTEIAPDQREKFLQRLQQVQQQGHSNLLGMPL 281 (621)
Q Consensus 248 r~r~ei~~dqrek~lqr~qqvqqq~~~~ll~~p~ 281 (621)
+|| +++||+++++++.+. ....+|+|.
T Consensus 10 ~Gr---s~eqk~~l~~~it~~----l~~~~~~p~ 36 (61)
T PRK02220 10 EGR---TEEQLKALVKDVTAA----VSKNTGAPA 36 (61)
T ss_pred CCC---CHHHHHHHHHHHHHH----HHHHhCcCh
Confidence 455 689999999999987 455677765
No 9
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=17.92 E-value=1e+02 Score=35.65 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHhccc
Q 007007 255 PDQREKFLQRLQQVQQQGHS 274 (621)
Q Consensus 255 ~dqrek~lqr~qqvqqq~~~ 274 (621)
-|||+||+|..+|- ++|.-
T Consensus 487 ~~Qr~rFe~Q~~~k-~~GDD 505 (560)
T KOG1885|consen 487 VDQRQRFEQQARDK-DAGDD 505 (560)
T ss_pred HHHHHHHHHHHHHh-hcCCc
Confidence 48999999988886 66543
No 10
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=15.00 E-value=1.3e+02 Score=30.74 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCCCChhHHhhhccCCCCCceeEEEeecCCCcHHHHHHHHHHhhccceeecc
Q 007007 499 VTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK 561 (621)
Q Consensus 499 ~tP~cYPq~PpP~ldnp~~fqKiKm~kfs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRYHKe 561 (621)
..|.||+.++...=....+|+.+ .+.+.+|- -=+.-|+-.|-.+|-.+|||---
T Consensus 20 ~FPlcF~~egeAKPLKiGifQDl-~e~lq~d~--------~vSktQLrqAlr~yts~wRYl~g 73 (208)
T COG3109 20 RFPLCFSLEGEAKPLKIGIFQDL-AERLQDDE--------NVSKTQLRQALRLYTSSWRYLYG 73 (208)
T ss_pred hCccccccCccccchhhhHHHHH-HHHHhccc--------cccHHHHHHHHHHHhcccceeee
Confidence 35888887754321245667652 01122221 12567999999999999999543
Done!