Query 007007
Match_columns 621
No_of_seqs 194 out of 399
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pa7_A DTDP-6-deoxy-3,4-keto-h 14.1 1E+02 0.0035 28.1 2.8 33 526-569 31-63 (141)
2 3o39_A Periplasmic protein rel 11.2 1E+02 0.0035 27.1 1.9 15 253-267 91-105 (108)
3 1zda_A Mini protein A domain, 10.9 1.3E+02 0.0044 22.8 2.0 15 251-265 21-35 (38)
4 1l6x_B Minimized B-domain of p 10.4 1.2E+02 0.0042 22.4 1.7 16 251-266 16-31 (34)
5 3bbz_A P protein, phosphoprote 9.4 1.2E+02 0.0042 23.9 1.5 15 254-268 17-31 (49)
6 3dl3_A Tellurite resistance pr 8.8 85 0.0029 28.4 0.5 26 515-543 78-104 (119)
7 3itf_A Periplasmic adaptor pro 8.0 1.6E+02 0.0054 27.2 1.9 20 252-271 118-137 (145)
8 1tc3_C Protein (TC3 transposas 7.9 1.8E+02 0.0061 19.4 1.7 17 249-265 1-18 (51)
9 2opa_A Probable tautomerase YW 7.4 1.5E+02 0.005 21.7 1.2 24 254-281 12-35 (61)
10 2hlv_A Odorant-binding protein 7.2 2E+02 0.0067 25.0 2.1 23 246-268 117-140 (160)
No 1
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=14.09 E-value=1e+02 Score=28.13 Aligned_cols=33 Identities=9% Similarity=0.303 Sum_probs=25.8
Q ss_pred CCCceeEEEeecCCCcHHHHHHHHHHhhccceeecccceeeecc
Q 007007 526 YGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRH 569 (621)
Q Consensus 526 fs~ETLFYIFYy~PgD~~QllAAkEL~kRgWRYHKe~k~WF~R~ 569 (621)
|...-+||||-+-++. -|+|.+||+...||.-.
T Consensus 31 f~ikRvy~~~~~~~g~-----------~RG~H~Hk~~~q~li~l 63 (141)
T 2pa7_A 31 FSIKRVYYIFDTKGEE-----------PRGFHAHKKLEQVLVCL 63 (141)
T ss_dssp SCCCEEEEEESCCSSC-----------CEEEEEESSCCEEEEEE
T ss_pred CCccEEEEEEecCCCC-----------EECcCcCCCceEEEEEE
Confidence 5556777777666775 49999999999998764
No 2
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=11.20 E-value=1e+02 Score=27.14 Aligned_cols=15 Identities=20% Similarity=0.691 Sum_probs=13.1
Q ss_pred cCchhHHHHHHHHHH
Q 007007 253 IAPDQREKFLQRLQQ 267 (621)
Q Consensus 253 i~~dqrek~lqr~qq 267 (621)
++|+||+||-+++++
T Consensus 91 LTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 91 LTPEQKKQFNANFEK 105 (108)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 689999999998875
No 3
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=10.92 E-value=1.3e+02 Score=22.77 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=13.0
Q ss_pred cccCchhHHHHHHHH
Q 007007 251 TEIAPDQREKFLQRL 265 (621)
Q Consensus 251 ~ei~~dqrek~lqr~ 265 (621)
+-|+.+||.-|+|.|
T Consensus 21 ~nLtEeQrn~yI~sl 35 (38)
T 1zda_A 21 PNLNEEQRNAKIKSI 35 (38)
T ss_dssp SSSCTTHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHh
Confidence 567899999999987
No 4
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=10.36 E-value=1.2e+02 Score=22.37 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=13.5
Q ss_pred cccCchhHHHHHHHHH
Q 007007 251 TEIAPDQREKFLQRLQ 266 (621)
Q Consensus 251 ~ei~~dqrek~lqr~q 266 (621)
+-|+.+||.-|+|.|.
T Consensus 16 ~nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 16 PNLNEEQRNAKIKSIR 31 (34)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHHh
Confidence 4578899999999874
No 5
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=9.36 E-value=1.2e+02 Score=23.92 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHHH
Q 007007 254 APDQREKFLQRLQQV 268 (621)
Q Consensus 254 ~~dqrek~lqr~qqv 268 (621)
-|++|++|..|+..+
T Consensus 17 np~~r~~Fe~ki~~~ 31 (49)
T 3bbz_A 17 NPQMKQAFEQRLAKA 31 (49)
T ss_dssp SHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 378999999999754
No 6
>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13
Probab=8.82 E-value=85 Score=28.43 Aligned_cols=26 Identities=27% Similarity=0.695 Sum_probs=15.8
Q ss_pred hhHHhhhccCCCCCceeEEE-eecCCCcHH
Q 007007 515 PAFWERLSLDSYGTDTLFFA-FYYQQNTYQ 543 (621)
Q Consensus 515 p~~fqKiKm~kfs~ETLFYI-FYy~PgD~~ 543 (621)
|..|-||. +++|+-|++ ||..+.|+.
T Consensus 78 Pq~wHrVe---~sdD~~f~leFyc~~~dyf 104 (119)
T 3dl3_A 78 PQYWHRIE---LSDDAQFNINFWSDQDKSG 104 (119)
T ss_dssp TTCEEEEE---ECTTCEEEEEEEECC----
T ss_pred CCceEEEE---ECCCeEEEEEEEECchHHh
Confidence 44455543 899998876 888888874
No 7
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=8.03 E-value=1.6e+02 Score=27.19 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.2
Q ss_pred ccCchhHHHHHHHHHHHHHh
Q 007007 252 EIAPDQREKFLQRLQQVQQQ 271 (621)
Q Consensus 252 ei~~dqrek~lqr~qqvqqq 271 (621)
-++|+||+||-+++++--++
T Consensus 118 vLTPEQk~ql~e~~~~r~~~ 137 (145)
T 3itf_A 118 LLTPEQQAVLNEKHQQRMEQ 137 (145)
T ss_dssp TSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH
Confidence 37899999998887765333
No 8
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=7.94 E-value=1.8e+02 Score=19.37 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=12.9
Q ss_pred ccc-ccCchhHHHHHHHH
Q 007007 249 GRT-EIAPDQREKFLQRL 265 (621)
Q Consensus 249 ~r~-ei~~dqrek~lqr~ 265 (621)
||+ .+.+++|++++..+
T Consensus 1 GR~~~l~~~~~~~i~~~~ 18 (51)
T 1tc3_C 1 PRGSALSDTERAQLDVMK 18 (51)
T ss_dssp CCSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 565 67888888888765
No 9
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=7.42 E-value=1.5e+02 Score=21.73 Aligned_cols=24 Identities=8% Similarity=0.318 Sum_probs=18.2
Q ss_pred CchhHHHHHHHHHHHHHhcccccCCCCC
Q 007007 254 APDQREKFLQRLQQVQQQGHSNLLGMPL 281 (621)
Q Consensus 254 ~~dqrek~lqr~qqvqqq~~~~ll~~p~ 281 (621)
+++||+++.+++-++=. ..||.|.
T Consensus 12 s~eqk~~l~~~i~~~l~----~~lg~~~ 35 (61)
T 2opa_A 12 TDEQKRNLVEKVTEAVK----ETTGASE 35 (61)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHCCCG
T ss_pred CHHHHHHHHHHHHHHHH----HHhCcCc
Confidence 68999999999988733 3466664
No 10
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=7.20 E-value=2e+02 Score=25.02 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=18.6
Q ss_pred Ccccc-cccCchhHHHHHHHHHHH
Q 007007 246 QFRGR-TEIAPDQREKFLQRLQQV 268 (621)
Q Consensus 246 q~r~r-~ei~~dqrek~lqr~qqv 268 (621)
.+=+| +++.++.+|||++.++..
T Consensus 117 ~llsR~~~~~~e~~~~f~~~~~~~ 140 (160)
T 2hlv_A 117 ELFVKGLNVEDEDLEKFWKLTEDK 140 (160)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHHT
T ss_pred EEEccCCCCCHHHHHHHHHHHHHc
Confidence 35578 799999999999987654
Done!