Query 007008
Match_columns 621
No_of_seqs 241 out of 1086
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bx2_L Ribonuclease E, RNAse E 100.0 1E-121 4E-126 1007.7 45.4 412 74-620 7-421 (517)
2 3cw2_C Translation initiation 98.7 4.3E-09 1.5E-13 107.5 1.4 85 289-397 56-144 (266)
3 1q8k_A Eukaryotic translation 98.3 4.7E-07 1.6E-11 94.4 5.0 83 289-395 58-152 (308)
4 2eqs_A ATP-dependent RNA helic 97.6 0.00012 4.2E-09 64.1 7.4 38 108-147 8-48 (103)
5 2k52_A Uncharacterized protein 97.6 0.00015 5.2E-09 60.5 7.5 36 110-147 3-38 (80)
6 2khj_A 30S ribosomal protein S 97.5 0.00024 8.1E-09 62.7 8.4 39 107-147 26-64 (109)
7 2k4k_A GSP13, general stress p 97.5 0.00033 1.1E-08 64.0 8.6 37 109-147 4-40 (130)
8 2cqo_A Nucleolar protein of 40 97.5 0.00018 6E-09 65.0 6.7 38 108-147 18-56 (119)
9 2khi_A 30S ribosomal protein S 97.4 0.00052 1.8E-08 61.2 8.9 39 107-147 25-63 (115)
10 3m7n_A Putative uncharacterize 96.5 0.011 3.8E-07 56.7 9.8 35 110-147 56-100 (179)
11 1kl9_A Eukaryotic translation 96.4 0.0054 1.8E-07 59.3 7.1 35 111-147 14-50 (182)
12 3aev_A Translation initiation 96.3 0.0083 2.8E-07 61.5 8.4 35 111-147 10-46 (275)
13 1y14_B B16, RPB7, DNA-directed 96.2 0.0065 2.2E-07 57.7 6.2 34 111-147 82-115 (171)
14 1go3_E DNA-directed RNA polyme 96.0 0.0075 2.6E-07 57.7 6.0 35 110-147 79-113 (187)
15 2a19_A EIF-2- alpha, eukaryoti 95.9 0.015 5.1E-07 55.8 7.4 34 112-147 15-50 (175)
16 2b8k_G B16, DNA-directed RNA p 95.6 0.017 5.9E-07 57.2 6.6 34 111-147 82-115 (215)
17 1wi5_A RRP5 protein homolog; S 95.5 0.016 5.6E-07 51.6 5.6 34 109-144 18-51 (119)
18 2ba0_A Archeal exosome RNA bin 94.9 0.15 5.1E-06 50.8 11.0 45 101-147 44-90 (229)
19 2c35_B Human RPB7, DNA-directe 94.8 0.028 9.4E-07 53.2 5.1 34 111-147 80-113 (172)
20 2z0s_A Probable exosome comple 93.9 0.11 3.9E-06 51.7 7.6 36 110-147 64-99 (235)
21 2je6_I RRP4, exosome complex R 93.8 0.14 4.9E-06 51.6 8.3 45 101-147 60-107 (251)
22 2nn6_I 3'-5' exoribonuclease C 93.6 0.16 5.6E-06 49.9 8.0 26 109-136 78-103 (209)
23 3h0g_G DNA-directed RNA polyme 93.4 0.074 2.5E-06 50.5 5.0 36 109-147 81-116 (172)
24 1luz_A Protein K3, protein K2; 93.0 0.078 2.7E-06 45.1 4.1 35 110-147 9-46 (88)
25 1a6f_A RNAse P protein, ribonu 93.0 0.36 1.2E-05 43.2 8.6 55 332-386 47-110 (119)
26 3psi_A Transcription elongatio 92.8 0.14 4.9E-06 62.0 7.3 38 108-147 898-935 (1219)
27 3cdi_A Polynucleotide phosphor 92.7 0.02 7E-07 65.8 0.0 38 108-147 623-660 (723)
28 1hh2_P NUSA, N utilization sub 92.4 0.19 6.6E-06 53.1 6.9 34 110-146 132-165 (344)
29 3bzc_A TEX; helix-turn-helix, 92.2 0.058 2E-06 62.6 2.9 36 110-147 652-687 (785)
30 3go5_A Multidomain protein wit 91.0 0.41 1.4E-05 49.2 7.3 38 109-147 66-104 (285)
31 4aid_A Polyribonucleotide nucl 89.8 0.061 2.1E-06 61.9 0.0 58 88-147 601-670 (726)
32 1d6t_A Ribonuclease P, RNAse P 89.8 0.35 1.2E-05 43.1 4.9 55 332-386 46-109 (117)
33 1k0r_A NUSA; two component arr 89.2 0.62 2.1E-05 49.6 7.1 35 110-146 128-169 (366)
34 4ayb_E DNA-directed RNA polyme 89.0 0.87 3E-05 43.1 7.4 36 109-147 78-113 (180)
35 2ljp_A Ribonuclease P protein 88.5 0.79 2.7E-05 40.9 6.3 56 332-387 48-113 (119)
36 3psf_A Transcription elongatio 87.8 0.1 3.5E-06 62.3 0.0 37 109-147 902-938 (1030)
37 2asb_A Transcription elongatio 85.6 1.6 5.3E-05 44.3 7.2 35 110-146 5-46 (251)
38 3go5_A Multidomain protein wit 84.0 1.7 5.9E-05 44.5 6.9 39 106-146 146-185 (285)
39 1e3p_A Guanosine pentaphosphat 80.4 0.39 1.3E-05 55.6 0.5 38 108-147 663-700 (757)
40 1nz0_A Ribonuclease P protein 80.0 1.5 5E-05 39.0 4.1 52 333-384 49-114 (118)
41 2bh8_A 1B11; transcription, mo 72.9 5.3 0.00018 34.5 5.5 38 108-147 57-94 (101)
42 2m0o_A PHD finger protein 1; t 67.1 5.6 0.00019 33.4 4.1 37 112-148 39-75 (79)
43 2ja9_A Exosome complex exonucl 65.6 6.2 0.00021 37.7 4.8 35 110-146 5-40 (175)
44 2e5q_A PHD finger protein 19; 62.2 8.1 0.00028 31.2 4.0 38 112-149 20-57 (63)
45 2e5p_A Protein PHF1, PHD finge 61.6 9.3 0.00032 31.3 4.3 37 113-149 23-59 (68)
46 2nn6_H Exosome complex exonucl 55.2 12 0.0004 38.9 5.0 45 101-147 82-128 (308)
47 3ayh_B DNA-directed RNA polyme 52.6 32 0.0011 33.2 7.3 35 110-147 79-113 (203)
48 4hcz_A PHD finger protein 1; p 43.8 29 0.00098 27.7 4.4 36 113-148 17-52 (58)
49 2ckz_B C25, DNA-directed RNA p 41.9 62 0.0021 31.7 7.6 35 110-147 79-114 (218)
50 3lcz_A YCZA, inhibitor of trap 32.6 12 0.00042 29.0 0.7 12 607-618 9-20 (53)
51 2vkc_A NEDD4-binding protein 2 28.8 58 0.002 29.4 4.6 65 524-589 30-97 (135)
52 3dp5_A OMCF, cytochrome C fami 28.2 12 0.00042 31.3 0.0 13 605-617 25-37 (99)
53 2bx9_A Anti-trap, AT, tryptoph 26.9 17 0.00059 28.1 0.6 12 608-619 24-35 (53)
54 2eqj_A Metal-response element- 26.5 74 0.0025 25.9 4.3 35 113-147 27-61 (66)
55 2blf_B SORB, sulfite\:cytochro 26.1 12 0.0004 30.7 -0.5 15 604-618 23-37 (81)
56 2id0_A Exoribonuclease 2; RNAs 25.9 48 0.0016 37.5 4.3 35 111-147 557-594 (644)
57 2nn6_G Exosome complex exonucl 25.1 91 0.0031 32.0 5.8 43 102-146 115-159 (289)
58 3ssc_A ECOKMCRBC, 5-methylcyto 22.5 1.4E+02 0.0049 28.4 6.1 76 319-395 60-157 (170)
59 3q8j_A Asteropsin A, ABU8-1; c 21.9 28 0.00097 24.5 0.9 12 608-619 13-24 (37)
60 3cp5_A Cytochrome C; electron 21.1 24 0.00081 30.1 0.4 10 608-617 43-52 (124)
61 2zon_G Cytochrome C551; nitrit 20.0 14 0.00049 29.5 -1.2 11 607-617 17-27 (87)
No 1
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=100.00 E-value=1.2e-121 Score=1007.70 Aligned_cols=412 Identities=33% Similarity=0.567 Sum_probs=373.8
Q ss_pred cceEEEEEecCCceEEEEEEECCEEeEEEeecCCCCcccCCeEEEEEeeecCCcceEEecccCCcceeeeccccCCCCcC
Q 007008 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIF 153 (621)
Q Consensus 74 ~~~~ilIn~~~~~e~RvAvlEdgkL~El~iE~~~~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~~~~~~~ 153 (621)
|.++||||+++++++|||++|||+|+||++|+......+||||+|+|+||+|+|||||||||.+++||||++|..
T Consensus 7 ~M~~ilI~~~~~ee~rvAl~e~~~L~el~iE~~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~----- 81 (517)
T 2bx2_L 7 HMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA----- 81 (517)
T ss_dssp SCEEEEEECSCTTCEEEEEEETTEEEEEEEECSSSCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSC-----
T ss_pred chheEEEEcCCCCeEEEEEEeCCEEEEEEEecCCCcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcC-----
Confidence 445799999766789999999999999999999999999999999999999999999999999999999999851
Q ss_pred CcccccchhhhcccchhhHHHHhhcccCCCCCCCCcchhhhcccccccccccCCCCCCCCCCCcchhhhhhccCCcccCC
Q 007008 154 PPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDD 233 (621)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (621)
+.+..... .
T Consensus 82 ~~~~~~~~------------------------------------------------------~----------------- 90 (517)
T 2bx2_L 82 REYFPANY------------------------------------------------------S----------------- 90 (517)
T ss_dssp GGGCC---------------------------------------------------------------------------
T ss_pred hhhhcccc------------------------------------------------------c-----------------
Confidence 11100000 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCEEEEEEeecCCCCCCcee
Q 007008 234 GEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313 (621)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lk~Gq~ILVQV~Ke~igtKGprL 313 (621)
. . . ..++...|++||+|+|||+|+|+|+|||+|
T Consensus 91 ------~--------------~----------~-----------------~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~l 123 (517)
T 2bx2_L 91 ------A--------------H----------G-----------------RPNIKDVLREGQEVIVQIDKEERGNKGAAL 123 (517)
T ss_dssp --------------------------------------------------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred ------c--------------c----------c-----------------ccchhhhccCCCEEEEEEEeeccccCCceE
Confidence 0 0 0 001235699999999999999999999999
Q ss_pred eecceeeceeEEEeeCCCce-eeecccChHHHHHHHHHHHhc-CCCCeeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007008 314 TAYPKLRSRFWILITSCDRI-GVSRKITGVERTRLKVIAKTL-QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391 (621)
Q Consensus 314 T~~ISLpGRYlVL~P~~~~I-gVSrKI~deeR~rLk~i~~~l-~~~~~GvIIRTaA~~aseeeL~~Dl~~L~~~W~~I~~ 391 (621)
|++|||||||+||||+++++ ||||||++++|+|||+++..+ .|+++|+||||+|+|+++++|.+|+++|.+.|+.|++
T Consensus 124 Tt~isl~GRylVl~P~~~~~~giSrkI~~~eR~rLk~~~~~~~~~~~~G~IvRT~a~g~~~eel~~dl~~L~~~w~~I~~ 203 (517)
T 2bx2_L 124 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 203 (517)
T ss_dssp ESSCCEECSSEEEETTCTTCCEECTTCC------HHHHHTTSCCCTTCEEEECGGGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeEEeccceEEEeCCCCCcCcccccCChHHHHHHHHHHHhhcCCCCceEEEEcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 899999988899999999987 5889999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCccCCcceeeeccCCchhhhhhhhcCCCccEEEEcChhHHHHHHHHHHhh-CCCcCCceeeccCCCCcc
Q 007008 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI-APDLCDRVELYDKRIPLF 470 (621)
Q Consensus 392 ~~~~~~~~~~~~~~~~~P~lL~~~~~~~~~~lRD~~~~~v~~IvvD~~~~y~~i~~~l~~~-~p~~~~~v~~y~~~~pLF 470 (621)
+++.. ++|+|||++.+++.+++||++++++++|+||+++.|+++++|++.+ +|+...+|++|.++.|||
T Consensus 204 ~~~~~----------~~P~ll~~e~~~~~r~lRD~~~~~~~~I~vd~~~~~~~~~~~~~~~~~p~~~~~v~~y~~~~plF 273 (517)
T 2bx2_L 204 AAESR----------PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 273 (517)
T ss_dssp HHHTS----------CSCEEEECCCCHHHHHHHHHCCTTEEEEEESCHHHHHHHHHHHHHTTCHHHHTTEEECCCSSCHH
T ss_pred HHhcC----------CCCEEEEecCcHHHHHHHHHccCCCCEEEECCHHHHHHHHHHHHHhcCccccceEEEEeCCCChh
Confidence 98765 4899999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCHHHHHHhHhCCceecCCCcEEEEecccceEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCcEE
Q 007008 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550 (621)
Q Consensus 471 ~~y~Ie~~I~~al~~rV~L~sGG~LVIE~TEALtvIDVNSGk~~~~~~~~~e~t~l~tNlEAA~EIARQLRLRnIgGIIV 550 (621)
+.|+|+++|++|++++||||||||||||+||||||||||||++ +++.+.++|+++||||||+||||||||||||||||
T Consensus 274 ~~y~ie~~i~~al~~~V~L~sGGylvIe~TEALt~IDVNsG~~--~~~~~~eet~~~tNleAA~EIaRQLRLRnlgGiIv 351 (517)
T 2bx2_L 274 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA--TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIV 351 (517)
T ss_dssp HHTTCHHHHHHTTCSEEECTTSCEEEEEECSSCEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCHHHHHHHHhCCeEEcCCCeEEEEecCcceEEEEccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999999999999999999999999999999999999999995 56789999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHHHHHHHHHhcCCCCcEEeccCCCeeEEEeecCCCCCchhhccccCCCcccCCccc
Q 007008 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVWFSNSQFSLCYLAFVHLLGLMK 620 (621)
Q Consensus 551 IDFIdM~~~~~r~~Vl~~L~~~lk~D~~k~~V~g~T~LGLvEiTRkR~r~sL~~~~~~~~~~~~~~~~~~ 620 (621)
||||||++++||++|++.|+++|++|+++++|+|||+||||||||||.|+||.+.++.+||+|||+|.++
T Consensus 352 IDFIdM~~~~~r~~v~~~l~~al~~Dr~k~~v~~~S~lGLvEmTRkR~r~sL~e~~~~~Cp~C~G~G~v~ 421 (517)
T 2bx2_L 352 IDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 421 (517)
T ss_dssp EECCCCSSHHHHHHHHHHHHHHTTTCSSCEEEEEECTTSEEEEEECCCSCCHHHHHCCCCSSSSSSSCCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhcCCCCcEEeccCCCceEEEeecCcCcChhhhhcCcCCCcCCceeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876
No 2
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.65 E-value=4.3e-09 Score=107.55 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=61.3
Q ss_pred ccccCCCEEEEEEeecCCCCCCceeeecceeeceeEEEeeCCCceeeecccChHHHHHHHHHHHhcCCC-CeeEEEeecC
Q 007008 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE-GFGLTIRTVA 367 (621)
Q Consensus 289 ~~lk~Gq~ILVQV~Ke~igtKGprLT~~ISLpGRYlVL~P~~~~IgVSrKI~deeR~rLk~i~~~l~~~-~~GvIIRTaA 367 (621)
..++.||.|.|||.+-.. ..+++.+|.|.... ..|+.+.+.+... ..+.|+|+.|
T Consensus 56 ~~~~vGd~V~VkVi~vd~----------------------~~g~I~LSlk~~~~--~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 56 DVLKENRKVIVKVIRVDR----------------------RKGTVDVSLKKVTD--DERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp HHSCTTCEEEEEECCCCS----------------------SSCCCBEESTTSCT--THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcCCCEEEEEEEEEeC----------------------CCCEEEEEEEecch--hhHHHHHHhccccCccceeeeehh
Confidence 458999999999997643 34567788887542 2333333333322 4577899988
Q ss_pred CCCC--HHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 007008 368 AGHS--LEELQKDL-EGLLSTWKNIMEHAKSAA 397 (621)
Q Consensus 368 ~~as--eeeL~~Dl-~~L~~~W~~I~~~~~~~~ 397 (621)
.+++ .+++.+++ ..|.+.|..+...++.+.
T Consensus 112 e~~~~~~ee~~~~i~~~l~~~~~~~~~aFk~a~ 144 (266)
T 3cw2_C 112 QKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAV 144 (266)
T ss_dssp HHTTCCHHHHHHHTHHHHHTTSSCHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 6655 89999999 999999999999888763
No 3
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.27 E-value=4.7e-07 Score=94.40 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=54.7
Q ss_pred ccccCCCEEEEEEeecCCCCCCceeeecceeeceeEEEeeCCCceeeecccChHHHHHHHHHHHhcCCCC--eeEEEeec
Q 007008 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG--FGLTIRTV 366 (621)
Q Consensus 289 ~~lk~Gq~ILVQV~Ke~igtKGprLT~~ISLpGRYlVL~P~~~~IgVSrKI~deeR~rLk~i~~~l~~~~--~GvIIRTa 366 (621)
..+++||.|.|+|.+-. |..++|.+|.|.... ..|+.+.+.+.... .|.|.|++
T Consensus 58 ~~~kvGd~V~VkVl~vD----------------------~~~~rI~LSlK~~~~--~p~~~~~~~~~~G~~v~G~V~~v~ 113 (308)
T 1q8k_A 58 KLIRIGRNECVKVIRVD----------------------KEKGYIDLSKRRVSP--EEAIKCEDKFTKSKTVYSILRHVA 113 (308)
T ss_dssp TTCSSSCEEEEEEEEEE----------------------TTTTEEEEECSSCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEEEEe----------------------CCCCEEEEEEEeccc--ChHHHHHHHccCCCeeEEEEEEcc
Confidence 35899999999998765 345568888887542 23434444443322 38999998
Q ss_pred CC-CC----CHHHHHHHH-HHHHHHHHH----HHHHHHH
Q 007008 367 AA-GH----SLEELQKDL-EGLLSTWKN----IMEHAKS 395 (621)
Q Consensus 367 A~-~a----seeeL~~Dl-~~L~~~W~~----I~~~~~~ 395 (621)
.. |+ +.++|.+++ ..|.+.+.. +...++.
T Consensus 114 ~~~G~fi~~~~e~l~~~i~~~l~~~~g~~~~~~y~af~~ 152 (308)
T 1q8k_A 114 EVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKH 152 (308)
T ss_dssp HHTTCCSSHHHHHHHHHTHHHHHHHTTCSSHHHHHHHHH
T ss_pred cccCCccCCCHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 85 99 888888888 455555544 4444443
No 4
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=0.00012 Score=64.14 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=33.6
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccC---Ccceeeecccc
Q 007008 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN---SRPSLMDIKHY 147 (621)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~---~k~aFL~~~d~ 147 (621)
....+|+||.|+|++|.| .+|||+|+. +..||+|+++.
T Consensus 8 ~~~~vG~i~~G~V~~v~~--fG~FV~l~~~~~~~~Glvhisel 48 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQ--FGCFVQLEGLRKRWEGLVHISEL 48 (103)
T ss_dssp SSCCTTCEEEEEEEEECS--SCEEEEECSSSSCCEEEECGGGT
T ss_pred ccCCCCCEEEEEEEEEec--cEEEEEEcCCCCCeEEEEEHHHC
Confidence 345789999999999999 899999996 89999999874
No 5
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.59 E-value=0.00015 Score=60.51 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=32.3
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
..+|++|.|+|++|.| .+|||+|+.+..||+|+++.
T Consensus 3 ~~~G~iv~G~V~~v~~--~G~fV~l~~~~~Gllh~sel 38 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEK--YGAFINLNEQVRGLLRPRDM 38 (80)
T ss_dssp CCTTCEEEEEEEEEET--TEEEEEEETTEEEEECGGGC
T ss_pred CCCCCEEEEEEEEEeC--CEEEEEECCCCEEEEEHHHC
Confidence 3589999999999999 69999999999999988763
No 6
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.54 E-value=0.00024 Score=62.72 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=34.3
Q ss_pred CCCcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
.....+|+||.|+|++|.|. +|||+|+.+..|||++++.
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~--G~fV~l~~~~~Gll~~sel 64 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAK--GATVELADGVEGYLRASEA 64 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSS--CEEEECSTTCBCCBCTTCC
T ss_pred hhcCCCCCEEEEEEEEEECC--eEEEEECCCCEEEEEHHHc
Confidence 34567999999999999995 8999999999999988764
No 7
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=97.47 E-value=0.00033 Score=64.04 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=33.6
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
...+|+||.|+|++|.|. +|||+|+.+..||+|+++.
T Consensus 4 ~~~vG~iv~G~V~~i~~~--G~FV~l~~~~~Glihisel 40 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAY--GAFVALDEETQGLVHISEV 40 (130)
T ss_dssp CCCTTCEEEEEEEEEETT--EEEEEEETTEEEEEEGGGT
T ss_pred cCCCCCEEEEEEEEEeCC--eEEEEECCCcEEEEEHHHC
Confidence 457899999999999996 9999999999999999874
No 8
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=0.00018 Score=64.97 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccC-Ccceeeecccc
Q 007008 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (621)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~-~k~aFL~~~d~ 147 (621)
....+|+||.|+|++|.| .+|||+|+. ...||+|+++.
T Consensus 18 ~~~~vG~iv~G~V~~I~~--fGaFV~l~g~~~~Glvhisel 56 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTD--YGAFIKIPGCRKQGLVHRTHM 56 (119)
T ss_dssp CSCCTTCEEEEEEEEEET--TEEEEECTTCSSCEEEEHHHH
T ss_pred cccCCCCEEEEEEEEEeC--ceEEEEECCCcEEEEEEHHHC
Confidence 345789999999999999 599999954 58999999874
No 9
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.40 E-value=0.00052 Score=61.23 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCCcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
.....+|++|.|+|++|.| .+|||+|+.+..||+|+++.
T Consensus 25 ~~~~~~G~~~~G~V~~v~~--~G~FV~l~~~~~Glvhisel 63 (115)
T 2khi_A 25 AKRYPEGTKLTGRVTNLTD--YGCFVEIEEGVEGLVHVSEM 63 (115)
T ss_dssp SCSSCSSCEEEEEEEEEET--TEEEEECSTTCEEEEETTSS
T ss_pred hhcCCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHC
Confidence 3456799999999999999 69999999999999998874
No 10
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=96.47 E-value=0.011 Score=56.68 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=30.4
Q ss_pred cccCCeEEEEEeeecCCcceEEecccC----------Ccceeeecccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN----------SRPSLMDIKHY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~----------~k~aFL~~~d~ 147 (621)
.. |+|+.|+|++|.+ ..|||||+. +..|+||+.+.
T Consensus 56 p~-GdiV~G~V~~V~~--~ga~V~I~~v~~~~~~~~~~~~Gll~isei 100 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRN--SIALIEVSSKKGENRGPSNRGIGILHVSNV 100 (179)
T ss_dssp CT-TCEEEEEEEEECS--SEEEEEEEEETTCCSCCTTCEEEEEEGGGT
T ss_pred CC-CCEEEEEEEEEeC--CcEEEEEccccCcccccccCeeEEEEHHHc
Confidence 35 9999999999987 689999988 78888888774
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.40 E-value=0.0054 Score=59.35 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=31.7
Q ss_pred ccCCeEEEEEeeecCCcceEEecc--cCCcceeeecccc
Q 007008 111 QCDSVYLGVVTKLVPNMGGAFVNI--GNSRPSLMDIKHY 147 (621)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVdI--G~~k~aFL~~~d~ 147 (621)
.+|++|.|+|++|.+ -+|||+| +.+..||+|+++.
T Consensus 14 ~~G~iv~G~V~~I~~--fGaFV~L~e~~g~eGLvhiSel 50 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAE--MGAYVSLLEYNNIEGMILLSEL 50 (182)
T ss_dssp CTTCEEEEEEEEECS--SEEEEEETTTTTEEEEEEGGGC
T ss_pred CCCCEEEEEEEEEec--cEEEEEEccCCCcEEEEEHHHC
Confidence 589999999999998 5899999 6789999999874
No 12
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=96.33 E-value=0.0083 Score=61.54 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=31.6
Q ss_pred ccCCeEEEEEeeecCCcceEEeccc--CCcceeeecccc
Q 007008 111 QCDSVYLGVVTKLVPNMGGAFVNIG--NSRPSLMDIKHY 147 (621)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVdIG--~~k~aFL~~~d~ 147 (621)
.+|++|.|+|++|.+. +|||+++ .+..||+|+++.
T Consensus 10 ~~Gdiv~G~V~~I~~f--GaFV~L~e~~gieGlIhiSel 46 (275)
T 3aev_A 10 EEGEFVVATVKRIHNY--GAFLELDEYPGKEAFMHISEV 46 (275)
T ss_dssp CTTCEEEEEEEEEETT--EEEEEETTSTTCEEEEEGGGS
T ss_pred CCCCEEEEEEEEEECc--EEEEEECCCCCeEEEEEHHHc
Confidence 4899999999999984 9999998 589999999874
No 13
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=96.16 E-value=0.0065 Score=57.66 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=31.5
Q ss_pred ccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
.+|.+|.|+|++|.+ -+|||++|. ..||+|+++.
T Consensus 82 ~~Gev~~G~V~~v~~--fG~FV~l~~-~dglvhis~l 115 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQ--HGFEVQVGP-MKVFVTKHLM 115 (171)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETT-EEEEEEGGGS
T ss_pred CCCCEEEEEEEEEec--CEEEEEecC-eEEEEEHHHC
Confidence 499999999999999 699999998 9999999874
No 14
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=96.03 E-value=0.0075 Score=57.75 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=31.4
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
..+|.||.|+|++|.+. +|||++|. ..||+|+++.
T Consensus 79 ~~~Gev~~G~V~~v~~~--G~fV~l~~-~eglvhis~l 113 (187)
T 1go3_E 79 PEMYELIEGEVVDVVEF--GSFVRLGP-LDGLIHVSQI 113 (187)
T ss_dssp CCTTCEEEEEEEEEETT--EEEEECSS-SEEEEEGGGS
T ss_pred cCCCCEEEEEEEEEeCc--EEEEEEcC-ccEEEEhHHh
Confidence 56899999999999985 89999986 9999999874
No 15
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=95.91 E-value=0.015 Score=55.80 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=29.3
Q ss_pred cCCeEEEEEeeecCCcceEEecc--cCCcceeeecccc
Q 007008 112 CDSVYLGVVTKLVPNMGGAFVNI--GNSRPSLMDIKHY 147 (621)
Q Consensus 112 vGnIY~GrV~kV~Pgm~AAFVdI--G~~k~aFL~~~d~ 147 (621)
+|.+|.|+|++|.+ -+|||+| +.+..||+|+++.
T Consensus 15 ~G~iv~G~V~~i~~--fGaFV~L~e~~gveGLvhiSel 50 (175)
T 2a19_A 15 IDDIVMVNVQQIAE--MGAYVKLLEYDNIEGMILLSEL 50 (175)
T ss_dssp TTCEEEEEEEEEET--TEEEEEETTTTTCEEEEECC--
T ss_pred CCCEEEEEEEEEec--ceEEEEEcCCCCcEEEEEHHHc
Confidence 89999999999988 4899999 4779999999874
No 16
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=95.58 E-value=0.017 Score=57.18 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=31.7
Q ss_pred ccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
.+|.+|.|+|++|.+ -+|||++|. ..||+|++..
T Consensus 82 ~vGev~~G~V~~vt~--fG~FVelg~-~dGlVhiS~l 115 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQ--HGFEVQVGP-MKVFVTKHLM 115 (215)
T ss_dssp CTTEEEEEEEEEEET--TEEEEECTT-SEEEEEGGGS
T ss_pred CCCCEEEEEEEEEec--ceEEEEecC-cEEEEEHHHC
Confidence 689999999999999 599999998 9999999874
No 17
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=95.51 E-value=0.016 Score=51.61 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=26.2
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeec
Q 007008 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144 (621)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~ 144 (621)
...+|.+|.|+|++|.+ -+||||||.+..+.|+.
T Consensus 18 ~l~~G~i~~G~V~~v~~--fG~fV~l~~~~~~~l~~ 51 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLED--HGYLVDIGVDGTRAFLP 51 (119)
T ss_dssp TCCTTCEEEEEEEEECS--SEEEEECCCSSCEEEEE
T ss_pred cCCCCCEEEEEEEEEeC--ceEEEEECCCCeEEEEE
Confidence 35689999999999988 48999999444444433
No 18
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.91 E-value=0.15 Score=50.77 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=37.0
Q ss_pred EEeecCCCC--cccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 101 LLLEPVKSN--VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 101 l~iE~~~~~--~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
+.+.+...+ ..+|+|-.|+|+.|.+. .||||||....|+|++.+.
T Consensus 44 v~V~p~~~~y~p~~GDiV~G~V~~v~~~--~a~V~I~~~~~g~l~isev 90 (229)
T 2ba0_A 44 VRVIPLKGRYTPSVGDVVIGIIREVAAN--GWAVDIYSPYQAFLPVSEN 90 (229)
T ss_dssp EEEEECSSSCCCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEGGGC
T ss_pred EEEEeCCCcccCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHHc
Confidence 445554433 47999999999999986 8999999999999998874
No 19
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=94.79 E-value=0.028 Score=53.21 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=30.7
Q ss_pred ccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
.+|.+|.|+|++|.+ -+|||++|... ||+|+++.
T Consensus 80 ~~Gev~~G~V~~v~~--fG~fV~l~~~~-glvhis~l 113 (172)
T 2c35_B 80 FKGEVVDAVVTQVNK--VGLFTEIGPMS-CFISRHSI 113 (172)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETTEE-EEEEGGGS
T ss_pred CCCCEEEEEEEEEeC--CEEEEEECCEE-EEEEHHHC
Confidence 499999999999998 59999999766 99999874
No 20
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=93.93 E-value=0.11 Score=51.73 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=32.8
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
..+|+|-.|+|++|.+. .||||||....|+||+.+.
T Consensus 64 p~~GDiV~G~V~~v~~~--~~~V~I~~~~~g~l~isei 99 (235)
T 2z0s_A 64 PQAGDVVIGLIQSVGIM--NWFVDINSPYVAVLSVQDF 99 (235)
T ss_dssp CCTTCCEEEEEEEECSS--EEEEECSSSSCEEEEHHHH
T ss_pred CCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHHh
Confidence 47999999999999886 8999999999999998763
No 21
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=93.84 E-value=0.14 Score=51.63 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=37.2
Q ss_pred EEeecCCC---CcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 101 LLLEPVKS---NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 101 l~iE~~~~---~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
+.+.+... ...+|+|-.|+|++|.+. +||||||....|+||+.+.
T Consensus 60 v~V~p~~~~~y~p~~GDiV~G~V~~v~~~--ga~VdI~~~~~GlL~isei 107 (251)
T 2je6_I 60 FEVIPLEGSFYYPKINDIVIGLVEDVEIY--GWVVDIKAPYKAYLPASNL 107 (251)
T ss_dssp EEEEESCCSCCCCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEHHHH
T ss_pred EEEEECCCcccCCCCCCEEEEEEEEEeCc--eEEEEcCCCeEEEEEHHHh
Confidence 44555444 347999999999999986 9999999999999998773
No 22
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=93.61 E-value=0.16 Score=49.88 Aligned_cols=26 Identities=15% Similarity=-0.032 Sum_probs=22.4
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccC
Q 007008 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGN 136 (621)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVdIG~ 136 (621)
...+|+|-.|+|++|.+. .|||||+.
T Consensus 78 ~p~vGDvV~G~V~~v~~~--~a~V~I~~ 103 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSR--FAKVHILY 103 (209)
T ss_dssp CCCTTCEEEEEEEEECSS--EEEEEEEE
T ss_pred CCCCCCEEEEEEEEEECc--eEEEEECc
Confidence 457999999999999884 69999963
No 23
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=93.39 E-value=0.074 Score=50.52 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=31.4
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
+..+|.+|.|+|++|.+ -+|||++|.-. ||+|+++.
T Consensus 81 ~p~~Gev~~G~V~~v~~--fG~FV~l~~~~-glVh~s~l 116 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNK--MGFFANIGPLN-VFVSSHLV 116 (172)
T ss_dssp CCCTTCEEECCCCEEET--TEEECCBTTBC-CEEEGGGS
T ss_pred ccCCCCEEEEEEEEEEc--ceEEEEeCCeE-EEEEHHHC
Confidence 34689999999999998 79999999755 99999874
No 24
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=93.05 E-value=0.078 Score=45.15 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=30.5
Q ss_pred cccCCeEEEEEeeecCCcceEEecccC--Ccceeeecc-cc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN--SRPSLMDIK-HY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~--~k~aFL~~~-d~ 147 (621)
..+|.+|.|+|+ |.+. +|||+++. +..||+|++ +.
T Consensus 9 ~~vG~~~~G~V~-v~~f--G~FVel~~~~~~eGLvhis~el 46 (88)
T 1luz_A 9 PNAGDVIKGRVY-EKDY--ALYIYLFDYPHFEAILAESVKM 46 (88)
T ss_dssp CCTTCEEEEEEE-EETT--EEEEEETTCTTSEEEEGGGSSC
T ss_pred CCCCCEEEEEEE-EEcc--EEEEEECCCCCeEEEEEeeHHh
Confidence 468999999999 9884 89999974 789999999 74
No 25
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=93.00 E-value=0.36 Score=43.20 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=39.0
Q ss_pred ceeeecccChH-HHHHHHHHHHh--------cCCCCeeEEEeecCCCCCHHHHHHHHHHHHHHH
Q 007008 332 RIGVSRKITGV-ERTRLKVIAKT--------LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386 (621)
Q Consensus 332 ~IgVSrKI~de-eR~rLk~i~~~--------l~~~~~GvIIRTaA~~aseeeL~~Dl~~L~~~W 386 (621)
++.||||+... .|+|+|.++.. +.+.++=+|.|..+..++.++|.+++..|..+.
T Consensus 47 G~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~k~ 110 (119)
T 1a6f_A 47 GLSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHLFRKS 110 (119)
T ss_dssp EEEECSTTCCHHHHHHHHHHHHHHHHHHTTTBCSSEEEEEECGGGTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEecccCcchhHhHHHHHHHHHHHHhhccCCCCCEEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 36679999765 57776654422 222355678888999999999999998876543
No 26
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.14 Score=61.99 Aligned_cols=38 Identities=5% Similarity=0.012 Sum_probs=33.5
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
..-.+|.||.|+|++|.+ -+|||+|+.+..|++|+++.
T Consensus 898 ~~l~~G~iv~G~V~~V~~--fGaFV~L~~gveGLVHiSel 935 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWH--NDIICTTNSEVECVVNAQRH 935 (1219)
T ss_dssp TTSCTTCEEEEEEEEECS--SCEEEECTTSCEEEECTTSS
T ss_pred hhCCCCCEEEEEEEEEec--ceEEEEeCCCceEEEEHHHc
Confidence 345689999999999998 48999999999999999874
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.72 E-value=0.02 Score=65.84 Aligned_cols=38 Identities=37% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
....+|.+|.|+|++|.+ -+|||+|+.+..||+|+++.
T Consensus 623 ~~~~vG~i~~G~V~~i~~--fGaFVel~~g~eGLvHiSel 660 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVD--FGAFVAIGGGKEGLVHISQI 660 (723)
T ss_dssp ----------------------------------------
T ss_pred hhhhcCcEEEEEEEEEec--ceEEEEeCCCceEEEEHHHc
Confidence 456799999999999998 69999999999999999874
No 28
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=92.40 E-value=0.19 Score=53.08 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.7
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeeccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d 146 (621)
...|.|..|+|.++.++ .+|||+| +-.|||+.++
T Consensus 132 ~~~GeIV~G~V~ri~~~--~v~VDlG-k~EgiLp~sE 165 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKE 165 (344)
T ss_dssp CCTTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGG
T ss_pred hcCCCEEEEEEEEEecC--cEEEEeC-CeEEEEeHHH
Confidence 34799999999999987 6999999 7899998765
No 29
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=92.19 E-value=0.058 Score=62.63 Aligned_cols=36 Identities=36% Similarity=0.484 Sum_probs=32.8
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
..+|.+|.|+|++|.+ -+|||+||.+..||+|+++.
T Consensus 652 l~vG~iv~G~V~~V~~--fGaFV~l~~~~eGLVhiS~L 687 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTN--FGAFVDIGVHQDGLVHISAL 687 (785)
T ss_dssp CCTTCBCCCEEEEEET--TEEEEECSSSSEEEEETTTS
T ss_pred cCCCCEEEEEEEEEec--CCeEEEeCCCcEEEEEHHHc
Confidence 5689999999999988 48999999999999999874
No 30
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=90.95 E-value=0.41 Score=49.19 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.4
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccC-Ccceeeecccc
Q 007008 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (621)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVdIG~-~k~aFL~~~d~ 147 (621)
...+|.+..|+|++|.+. -+||||+|. ++.+|+|+++.
T Consensus 66 ~~~~G~~~~g~V~~v~~~-~GaFVdiG~~~~d~lvp~sel 104 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKD-LGVFVDTGLPDKEIVVSLDIL 104 (285)
T ss_dssp CSCSSSCEEEEEEEEETT-TEEEEECSCTTCCEEEEGGGS
T ss_pred cccCCCEEEEEEEEEccC-ceEEEEECCCCcEEEEEHHHC
Confidence 457999999999999843 489999999 79999999985
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=89.82 E-value=0.061 Score=61.94 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=0.3
Q ss_pred EEEEEEECCEEeEE------------EeecCCCCcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 88 QRIAVLEDEKLVEL------------LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 88 ~RvAvlEdgkL~El------------~iE~~~~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
..|-+-+||.+.=+ .++.-.....+|.+|.|+|++|.+ -+|||+|+.+..||+|+++.
T Consensus 601 ~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~--fGaFVel~~g~eGLvHiSel 670 (726)
T 4aid_A 601 AKVDINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVD--FGAFVNFFGAKDGLVHVSQI 670 (726)
T ss_dssp -------------CCSCHHHHHHHHHC---------------------------------------------
T ss_pred CceeEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEec--cEEEEEECCCcEEEEEHHHc
Confidence 56677777765211 122222345799999999999987 68999999999999999874
No 32
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=89.77 E-value=0.35 Score=43.14 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=39.0
Q ss_pred ceeeecccChH-HHHHHHHHHHh--------cCCCCeeEEEeecCCCCCHHHHHHHHHHHHHHH
Q 007008 332 RIGVSRKITGV-ERTRLKVIAKT--------LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386 (621)
Q Consensus 332 ~IgVSrKI~de-eR~rLk~i~~~--------l~~~~~GvIIRTaA~~aseeeL~~Dl~~L~~~W 386 (621)
++.||||+... .|+|+|.++.. +.+.++=+|.|..+..++.++|.+++..|..+.
T Consensus 46 G~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~k~ 109 (117)
T 1d6t_A 46 GISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIA 109 (117)
T ss_dssp EEECCSSSCSTTHHHHHHHHHHHHHHHGGGTCCSSCEEEEECSGGGGCCTTHHHHHHTTHHHHH
T ss_pred EEEEecccCcchHHhHHHHHHHHHHHHhhccCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 36679999665 67766654422 223356688888999999999999998776543
No 33
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=89.23 E-value=0.62 Score=49.62 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.9
Q ss_pred cccCCeEEEEEee----ecCCcceEEecccC---Ccceeeeccc
Q 007008 110 VQCDSVYLGVVTK----LVPNMGGAFVNIGN---SRPSLMDIKH 146 (621)
Q Consensus 110 ~~vGnIY~GrV~k----V~Pgm~AAFVdIG~---~k~aFL~~~d 146 (621)
...|.|.-|+|.+ +.++ .+|||+|. +-.|+|+.++
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~--~v~VdLG~~~~k~EgiLP~~E 169 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAE 169 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTT--CEEEEECCSSSCEEEEECGGG
T ss_pred hcCCCEEEEEEEEccccccCC--eEEEEeCCCccceEEEEcHHH
Confidence 4589999999999 9987 69999997 4678886544
No 34
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=88.98 E-value=0.87 Score=43.10 Aligned_cols=36 Identities=28% Similarity=0.353 Sum_probs=31.5
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
+..+|.+|-|+|++|.+. +|||++|. ..||+|+.+.
T Consensus 78 ~p~~Gev~~G~V~~v~~~--G~fv~l~~-~~glvh~s~l 113 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNY--GVFVNLGP-MDGLVHISQI 113 (180)
T ss_dssp CCCTTCEEEEEEEEEETT--EEEEECSS-SEEEEEGGGS
T ss_pred eccCCCEEEEEEeeeccc--eEEEEECC-ccceEEeeec
Confidence 346899999999999984 99999985 8999999875
No 35
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=88.55 E-value=0.79 Score=40.87 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=39.8
Q ss_pred ceeeecc-cChH-HHHHHHHHHHhc----C---C-CCeeEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 007008 332 RIGVSRK-ITGV-ERTRLKVIAKTL----Q---P-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387 (621)
Q Consensus 332 ~IgVSrK-I~de-eR~rLk~i~~~l----~---~-~~~GvIIRTaA~~aseeeL~~Dl~~L~~~W~ 387 (621)
++.|||| +... .|+|+|.++.+. . + -++=+|.|..+..++.++|.+++..|.....
T Consensus 48 G~sVsKK~vg~AV~RNRiKR~lRe~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~~~~ 113 (119)
T 2ljp_A 48 GLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHC 113 (119)
T ss_dssp CCBCCTTTSCCHHHHHHHHHHHHHHHTTCTTTSCSSEECEEECTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCccCCchhHHhHHHHHHHHHHHHHHhcCCCceEEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 3667999 8765 688776655332 1 2 1345788888899999999999988766543
No 36
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=87.79 E-value=0.1 Score=62.26 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=0.0
Q ss_pred CcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
...+|.||.|+|++|.+ -+|||+|+.+..|++|+++.
T Consensus 902 ~l~~G~iv~G~V~~V~~--fGaFV~L~~gveGLVHiSel 938 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWH--NDIICTTNSEVECVVNAQRH 938 (1030)
T ss_dssp ---------------------------------------
T ss_pred HhcCCCEEEEEEEEEcc--CeEEEEeCCCcEEEEEHHHc
Confidence 34689999999999988 58999999999999998874
No 37
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=85.58 E-value=1.6 Score=44.30 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.0
Q ss_pred cccCCeEEEEEee----ecCCcceEEecccC---Ccceeeeccc
Q 007008 110 VQCDSVYLGVVTK----LVPNMGGAFVNIGN---SRPSLMDIKH 146 (621)
Q Consensus 110 ~~vGnIY~GrV~k----V~Pgm~AAFVdIG~---~k~aFL~~~d 146 (621)
...|.|..|.|.+ +.++ .+|||+|. +-.|+|+.++
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~--~ViVdlG~~~~k~EgiLP~~E 46 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAE 46 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTT--CEEEEECSSSSCEEEEECGGG
T ss_pred hcCCCEEEEEEEEccccccCC--eEEEEeCCCCcceEEEEcHHH
Confidence 4689999999999 7876 59999997 4678875443
No 38
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=83.97 E-value=1.7 Score=44.52 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCCCcccCCeEEEEEeeecCCcceEEe-cccCCcceeeeccc
Q 007008 106 VKSNVQCDSVYLGVVTKLVPNMGGAFV-NIGNSRPSLMDIKH 146 (621)
Q Consensus 106 ~~~~~~vGnIY~GrV~kV~Pgm~AAFV-dIG~~k~aFL~~~d 146 (621)
......+|++..|+|.++.|. +||| +++.+-.||+|.++
T Consensus 146 ~~~~~~~G~~V~g~V~~i~~~--G~fV~~i~~g~~Glih~SE 185 (285)
T 3go5_A 146 PAYNNMQNQNWPAIVYRLKLS--GTFVYLPENNMLGFIHPSE 185 (285)
T ss_dssp CCCSCCTTCEEEEEEEEEETT--EEEEEETTTTEEEEECGGG
T ss_pred hhhhCCCCCEEEEEEEEEeCC--cEEEEEeCCCeEEEEEHHH
Confidence 345667999999999999996 9999 99999999998866
No 39
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=80.38 E-value=0.39 Score=55.62 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=18.9
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
....+|.+|.|+|++|.+ -+|||++..+..||+|+++.
T Consensus 663 ~~~~vG~i~~G~V~~i~~--fGaFV~l~~g~eGLvHiSel 700 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTT--FGAFVSLLPGKDGLLHISQI 700 (757)
T ss_dssp ----------CBEEECC---CSCEECCC---CCCCC----
T ss_pred hhcccccEEEEEEEEccc--cEEEEEEcCCcEEEEEhHHh
Confidence 345789999999999988 48999999999999999884
No 40
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=80.04 E-value=1.5 Score=39.04 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=35.8
Q ss_pred eeeecccChH-HHHHHHHHHHh----c---CCCC--eeEEEeecCC----CCCHHHHHHHHHHHHH
Q 007008 333 IGVSRKITGV-ERTRLKVIAKT----L---QPEG--FGLTIRTVAA----GHSLEELQKDLEGLLS 384 (621)
Q Consensus 333 IgVSrKI~de-eR~rLk~i~~~----l---~~~~--~GvIIRTaA~----~aseeeL~~Dl~~L~~ 384 (621)
+.||||+... .|+|+|.++.. . .+.+ +=+|.|..+. .++.++|.+++..|..
T Consensus 49 ~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~g~d~Vviar~~~~~~~~~~~~~~l~~~l~~ll~ 114 (118)
T 1nz0_A 49 IVVKRKFGKATRRNKLKRWVREIFRRNKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLK 114 (118)
T ss_dssp ECCCGGGCSHHHHHHHHHHHHHHHHHHTTTSCSSEEEEEEECHHHHHHGGGSCHHHHHHHHHHHHT
T ss_pred EEEecccCChhHHhHHHHHHHHHHHHHHhhcCCCcEEEEEecccccccccCCCHHHHHHHHHHHHH
Confidence 5679999765 58776654432 2 2233 3467777777 8999999999987754
No 41
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=72.87 E-value=5.3 Score=34.55 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
....+|.+|.|.|+++.+ -+|||+|..+..|++|+++.
T Consensus 57 ~~l~~Ge~V~g~V~~i~~--fG~fv~l~~~~eGlvhis~i 94 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITD--FGIFIGLDGGIDGLVHLSDI 94 (101)
T ss_dssp CCCCTTCEEEEEEEECCS--EEEEECTTSCEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEeCC--cEEEEEcCCCceEEEEHHHC
Confidence 345689999999999988 59999998889999999885
No 42
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=67.14 E-value=5.6 Score=33.40 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=34.0
Q ss_pred cCCeEEEEEeeecCCcceEEecccCCcceeeeccccC
Q 007008 112 CDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (621)
Q Consensus 112 vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~~ 148 (621)
=|.-|+|.|.+|...-+.+||-++.+-......+|+.
T Consensus 39 DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~ 75 (79)
T 2m0o_A 39 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 75 (79)
T ss_dssp TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBC
T ss_pred CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccc
Confidence 3889999999999999999999999999999999864
No 43
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=65.55 E-value=6.2 Score=37.67 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.5
Q ss_pred cccCCeEEEEEeeecCCcceEEecccC-Ccceeeeccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKH 146 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~-~k~aFL~~~d 146 (621)
..+|++=.|+|+.+.+ ..+|||||. .-.|+||+.+
T Consensus 5 P~~gDvViG~V~~v~~--~~~~VdI~~~~~~a~L~~s~ 40 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFS--DSYKVSLQNFSSSVSLSYMA 40 (175)
T ss_dssp CCTTCEEEEEEEEECS--SEEEEESSTTSCCEEEETTS
T ss_pred CCCcCEEEEEEEEEEC--cEEEEEECCCCccEEEEHHH
Confidence 4689999999999977 789999999 8999999876
No 44
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.19 E-value=8.1 Score=31.20 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=34.3
Q ss_pred cCCeEEEEEeeecCCcceEEecccCCcceeeeccccCC
Q 007008 112 CDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149 (621)
Q Consensus 112 vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~~~ 149 (621)
=|.-|+|.|++|.-.-+.+||-.+.+-......+|++.
T Consensus 20 DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~~ 57 (63)
T 2e5q_A 20 DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQH 57 (63)
T ss_dssp TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGGEEC
T ss_pred CCCEEEEEEEEEecCCCEEEEEEccCceeEEEeecccc
Confidence 38899999999999999999999999999999988743
No 45
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.55 E-value=9.3 Score=31.29 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCeEEEEEeeecCCcceEEecccCCcceeeeccccCC
Q 007008 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149 (621)
Q Consensus 113 GnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~~~ 149 (621)
|.-|+|.|++|...-+.+||-++.+-.-....+|++.
T Consensus 23 GlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~~ 59 (68)
T 2e5p_A 23 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISP 59 (68)
T ss_dssp SSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEEC
T ss_pred CcEEEeEEEEEecCCcEEEEEEccCCeeeeeeecccc
Confidence 8899999999999999999999999999999998743
No 46
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=55.24 E-value=12 Score=38.90 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=35.5
Q ss_pred EEeecCCC--CcccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 101 LLLEPVKS--NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 101 l~iE~~~~--~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
+.+.+... ...+|+|-.|+|++|.+ ..||||||....|++++.+.
T Consensus 82 vsV~p~~~rY~P~vGDvViG~Vt~V~~--~~a~VdI~s~~~~~l~iS~v 128 (308)
T 2nn6_H 82 ICVKALKTRYIGEVGDIVVGRITEVQQ--KRWKVETNSRLDSVLLLSSM 128 (308)
T ss_dssp EEEEESSCCCCCCSSBCCCEEEEEEET--TEEEEECSSSSCEEEESSCC
T ss_pred EEEeeCCCccCCCCCCEEEEEEEEEeC--ceEEEEECCCcCCceechhh
Confidence 34444433 34789999999999976 56999999999999988764
No 47
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=52.58 E-value=32 Score=33.21 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=29.1
Q ss_pred cccCCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
..+|.+|-|+|+.|.+. ++||++| --.|+.+..+.
T Consensus 79 p~~GEv~~G~Vs~vt~~--GifV~lg-~~eglv~~~~l 113 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEE--GIRVTIS-FFDDIFIPKDM 113 (203)
T ss_dssp CCTTCEEEEEEEEEETT--EEEEECS-SCCCEEEEGGG
T ss_pred cCCCCEEEEEEEEEecc--EEEEEEe-CceEEEEcHHh
Confidence 46899999999999985 9999997 45677777764
No 48
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=43.85 E-value=29 Score=27.69 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCeEEEEEeeecCCcceEEecccCCcceeeeccccC
Q 007008 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (621)
Q Consensus 113 GnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~~ 148 (621)
|--|+|+|.+|.+.-+.+||-.+.+-......+|++
T Consensus 17 G~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 17 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred CCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 889999999999999999999999998888888863
No 49
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=41.95 E-value=62 Score=31.69 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=28.9
Q ss_pred cccCCeEEEEEeeecCCcceEEecc-cCCcceeeecccc
Q 007008 110 VQCDSVYLGVVTKLVPNMGGAFVNI-GNSRPSLMDIKHY 147 (621)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVdI-G~~k~aFL~~~d~ 147 (621)
..+|.+|-|+|+.|.+ -++||++ | --.|++++.+.
T Consensus 79 p~vGEv~~G~Is~Vt~--fGifVeL~g-~~eglv~~s~l 114 (218)
T 2ckz_B 79 PFLGEIVTGWISKCTA--EGIKVSLLG-IFDDIFIPQNM 114 (218)
T ss_dssp CCTTCEEEEEEEEEET--TEEEEECTT-SCCCEEEETTT
T ss_pred CCCCCEEEEEEEEEcc--CcEEEEccC-ccceEEEcHHH
Confidence 4689999999999997 5999999 6 35777777764
No 50
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=32.63 E-value=12 Score=28.99 Aligned_cols=12 Identities=8% Similarity=-0.285 Sum_probs=6.3
Q ss_pred cccCCCcccCCc
Q 007008 607 LCYLAFVHLLGL 618 (621)
Q Consensus 607 ~~~~~~~~~~~~ 618 (621)
..+||.|||.|.
T Consensus 9 ~~~C~~C~GsG~ 20 (53)
T 3lcz_A 9 ETTCPNCNGSGR 20 (53)
T ss_dssp EEECTTTTTSCE
T ss_pred eccCcCCccccc
Confidence 345555555554
No 51
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=28.83 E-value=58 Score=29.36 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCCCChhhHHHHHHHHHHHHh---cCCCCcEEeccCCCe
Q 007008 524 AILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE---RDRSMVKVSELSRHG 589 (621)
Q Consensus 524 t~l~tNlEAA~EIARQLRLRnIgGIIVIDFIdM~~~~~r~~Vl~~L~~~lk---~D~~k~~V~g~T~LG 589 (621)
.+-+.|.+||.+|.++.+- ++.----||+-.|.-++....|...|.++.. .......|.=||.-|
T Consensus 30 ~~~~~~~~Aa~~If~~~N~-~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v~IIhGkG 97 (135)
T 2vkc_A 30 KMKEANHLAAIEIFEKVNA-SLLPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRG 97 (135)
T ss_dssp -CCSHHHHHHHHHHHHHHH-HHGGGTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECCSC
T ss_pred HHHHHHHHHHHHHHHHhcc-cCCCCceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECCC
Confidence 4457899999999998654 3333458999999999999999888888753 111222344455555
No 52
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=28.18 E-value=12 Score=31.25 Aligned_cols=13 Identities=23% Similarity=-0.005 Sum_probs=9.9
Q ss_pred hccccCCCcccCC
Q 007008 605 FSLCYLAFVHLLG 617 (621)
Q Consensus 605 ~~~~~~~~~~~~~ 617 (621)
+....|..|||.+
T Consensus 25 ly~~~Ca~CHg~~ 37 (99)
T 3dp5_A 25 LFATHCAGCHPQG 37 (99)
T ss_dssp HHHHHTTTTSGGG
T ss_pred HHHHHHHHhCCCC
Confidence 3446899999975
No 53
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=26.85 E-value=17 Score=28.13 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=7.8
Q ss_pred ccCCCcccCCcc
Q 007008 608 CYLAFVHLLGLM 619 (621)
Q Consensus 608 ~~~~~~~~~~~~ 619 (621)
.+|+.|||.|.+
T Consensus 24 ~~C~~C~G~G~v 35 (53)
T 2bx9_A 24 TPCPACSGKGVI 35 (53)
T ss_dssp EECTTTTTSSEE
T ss_pred CCCccCCCCccE
Confidence 467777776654
No 54
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=26.53 E-value=74 Score=25.94 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCeEEEEEeeecCCcceEEecccCCcceeeecccc
Q 007008 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (621)
Q Consensus 113 GnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d~ 147 (621)
|--|.|+|++|-..-+-++|-+..+-......+|+
T Consensus 27 Gl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi 61 (66)
T 2eqj_A 27 GLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDI 61 (66)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTE
T ss_pred CcEEEeEEEEEccCCcEEEEEEccCCEEEEEeecc
Confidence 67899999999999999999999998888888886
No 55
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=26.15 E-value=12 Score=30.75 Aligned_cols=15 Identities=13% Similarity=0.005 Sum_probs=11.5
Q ss_pred hhccccCCCcccCCc
Q 007008 604 QFSLCYLAFVHLLGL 618 (621)
Q Consensus 604 ~~~~~~~~~~~~~~~ 618 (621)
++....|..||.+|.
T Consensus 23 ~l~~~~C~~CH~~~~ 37 (81)
T 2blf_B 23 EAAQNNCAACHSVDY 37 (81)
T ss_dssp HHHHHHTTSSSCTHH
T ss_pred HHHHHHHHHhcCCcc
Confidence 445578999999874
No 56
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=25.93 E-value=48 Score=37.48 Aligned_cols=35 Identities=11% Similarity=0.277 Sum_probs=31.2
Q ss_pred ccCC--eEEEEEeeecCCcceEEecc-cCCcceeeecccc
Q 007008 111 QCDS--VYLGVVTKLVPNMGGAFVNI-GNSRPSLMDIKHY 147 (621)
Q Consensus 111 ~vGn--IY~GrV~kV~Pgm~AAFVdI-G~~k~aFL~~~d~ 147 (621)
.+|. +|-|+|.+|.+ .++||.+ ..+-.||+|+++.
T Consensus 557 ~vGe~~~f~g~V~~V~~--~G~fV~L~~~gieGlVhis~l 594 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISR--GGMRVRLVDNGAIAFIPAPFL 594 (644)
T ss_dssp GTTSCCCEEEEEEEEET--TEEEEEETTTCCEEEEEGGGT
T ss_pred ccCCCceEEEEEEEEeC--CceEEEEcCCcEEEEEEchhc
Confidence 5898 99999999998 7999999 5789999999774
No 57
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.10 E-value=91 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=34.2
Q ss_pred EeecCCC--CcccCCeEEEEEeeecCCcceEEecccCCcceeeeccc
Q 007008 102 LLEPVKS--NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (621)
Q Consensus 102 ~iE~~~~--~~~vGnIY~GrV~kV~Pgm~AAFVdIG~~k~aFL~~~d 146 (621)
.+++... -..+|+|-+|+|++|-+ ..+.|||+..-.|+|++.+
T Consensus 115 ~V~~~~~rYiP~vGDiVIG~Vt~v~~--~~~~VdI~s~~~a~L~~~~ 159 (289)
T 2nn6_G 115 WVDSQQKRYVPVKGDHVIGIVTAKSG--DIFKVDVGGSEPASLSYLS 159 (289)
T ss_dssp EEECCCSSCCCCSSEEEEEEEEEEET--TEEEEECSSSSCCCEESCS
T ss_pred EEEecCCCCCCCCCCEEEEEEEEEeC--cEEEEEECCCceeEEehhh
Confidence 4444433 34689999999999965 5699999999999998876
No 58
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=22.47 E-value=1.4e+02 Score=28.42 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=47.5
Q ss_pred eeceeEEEeeCCCc------eeeecccCh-----------H-HHHHHHHHHHhcCCC--CeeEE--EeecCCCCCHHHHH
Q 007008 319 LRSRFWILITSCDR------IGVSRKITG-----------V-ERTRLKVIAKTLQPE--GFGLT--IRTVAAGHSLEELQ 376 (621)
Q Consensus 319 LpGRYlVL~P~~~~------IgVSrKI~d-----------e-eR~rLk~i~~~l~~~--~~GvI--IRTaA~~aseeeL~ 376 (621)
=-|.|.||+-..+. .|+|..+.. + -|.+++... ...|. +-+.| .=+.+...+.+.|.
T Consensus 60 ~~GiY~VyLf~~d~~~LyLs~GvsE~~~~~~~W~~~~~~~qtI~~~f~~r~-g~~pkrYg~S~Vyk~Yd~~~~~~~~~L~ 138 (170)
T 3ssc_A 60 SNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATS-GVYPKKYGQSYYACSQKVSQGIDYTRFA 138 (170)
T ss_dssp SSSEEEEEEEEGGGTEEEEEEEECSSSCCSSCCCCSSCCCCBHHHHHHHHH-SCCCSSCTTSEEEEEEEGGGCCCHHHHH
T ss_pred ecceEEEEEEEcCCCEEEEEEEecccCCccccccccccHHHHHHHHHhhhc-CCCccccCCceEEEEEecCCCCCHHHHH
Confidence 35778777765443 477777643 1 144444331 12343 23454 33456678999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007008 377 KDLEGLLSTWKNIMEHAKS 395 (621)
Q Consensus 377 ~Dl~~L~~~W~~I~~~~~~ 395 (621)
+||..+.+.|+.++...++
T Consensus 139 ~DL~eiI~~Yk~~~~s~~~ 157 (170)
T 3ssc_A 139 SMLDNIINDYKLIFNSGKS 157 (170)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 9999999999999776554
No 59
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=21.86 E-value=28 Score=24.53 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=10.2
Q ss_pred ccCCCcccCCcc
Q 007008 608 CYLAFVHLLGLM 619 (621)
Q Consensus 608 ~~~~~~~~~~~~ 619 (621)
+++|||-|+|+-
T Consensus 13 qfypccpglglt 24 (37)
T 3q8j_A 13 QFYPCCPGLGLT 24 (37)
T ss_dssp TTBCBCTTSCEE
T ss_pred EEecCCCCCCcE
Confidence 688999999973
No 60
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=21.07 E-value=24 Score=30.08 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=8.4
Q ss_pred ccCCCcccCC
Q 007008 608 CYLAFVHLLG 617 (621)
Q Consensus 608 ~~~~~~~~~~ 617 (621)
..|..||+.+
T Consensus 43 ~~C~~CH~~~ 52 (124)
T 3cp5_A 43 TYCTACHRLD 52 (124)
T ss_dssp HHTTTTCCSS
T ss_pred HhhHHhCCCC
Confidence 4799999875
No 61
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=20.01 E-value=14 Score=29.48 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=9.0
Q ss_pred cccCCCcccCC
Q 007008 607 LCYLAFVHLLG 617 (621)
Q Consensus 607 ~~~~~~~~~~~ 617 (621)
...|..|||.+
T Consensus 17 ~~~C~~CHg~~ 27 (87)
T 2zon_G 17 RSACVVCHASG 27 (87)
T ss_dssp HHTTHHHHTTT
T ss_pred HHHhHHHcCCC
Confidence 35799999976
Done!