Query 007010
Match_columns 621
No_of_seqs 217 out of 1667
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 17:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01315 5C_CHO_kinase FGGY-f 100.0 1.1E-93 2.5E-98 800.6 50.9 531 56-612 1-540 (541)
2 TIGR01314 gntK_FGGY gluconate 100.0 2.2E-90 4.8E-95 769.8 53.1 497 56-618 1-502 (505)
3 PRK15027 xylulokinase; Provisi 100.0 2.8E-90 6.1E-95 765.2 49.6 479 56-612 1-482 (484)
4 PRK04123 ribulokinase; Provisi 100.0 8.7E-88 1.9E-92 756.1 52.9 507 54-609 2-533 (548)
5 PRK00047 glpK glycerol kinase; 100.0 4.2E-88 9.2E-93 750.3 47.6 479 54-612 4-497 (498)
6 TIGR01234 L-ribulokinase L-rib 100.0 1.8E-87 3.9E-92 750.8 50.8 504 56-612 2-533 (536)
7 PRK10939 autoinducer-2 (AI-2) 100.0 3.7E-87 8E-92 746.1 48.1 493 54-613 2-506 (520)
8 PLN02295 glycerol kinase 100.0 2.6E-87 5.6E-92 745.6 45.6 480 56-615 1-510 (512)
9 PTZ00294 glycerol kinase-like 100.0 8.7E-87 1.9E-91 740.4 47.8 482 54-614 1-503 (504)
10 COG1069 AraB Ribulose kinase [ 100.0 9.7E-86 2.1E-90 693.0 45.3 527 54-615 2-531 (544)
11 TIGR01311 glycerol_kin glycero 100.0 7.5E-85 1.6E-89 723.4 47.1 474 55-610 1-491 (493)
12 TIGR01312 XylB D-xylulose kina 100.0 7.5E-84 1.6E-88 715.2 47.1 476 58-607 1-481 (481)
13 COG0554 GlpK Glycerol kinase [ 100.0 4.7E-84 1E-88 671.0 41.6 483 54-613 4-497 (499)
14 PRK10331 L-fuculokinase; Provi 100.0 9.1E-83 2E-87 702.8 45.6 458 55-597 2-469 (470)
15 COG1070 XylB Sugar (pentulose 100.0 3E-82 6.4E-87 701.9 48.9 492 52-615 1-500 (502)
16 TIGR02628 fuculo_kin_coli L-fu 100.0 6.8E-80 1.5E-84 678.7 43.9 452 56-585 2-464 (465)
17 PLN02669 xylulokinase 100.0 2.1E-76 4.5E-81 660.0 44.7 489 54-611 7-551 (556)
18 TIGR02627 rhamnulo_kin rhamnul 100.0 4.2E-70 9.1E-75 599.5 32.1 429 58-576 1-448 (454)
19 KOG2517 Ribulose kinase and re 100.0 5E-68 1.1E-72 564.6 39.8 491 54-618 5-515 (516)
20 PRK10640 rhaB rhamnulokinase; 100.0 1.2E-68 2.7E-73 588.7 34.7 444 70-608 3-466 (471)
21 PF00370 FGGY_N: FGGY family o 100.0 2.9E-49 6.2E-54 400.1 19.3 241 56-328 1-245 (245)
22 KOG2531 Sugar (pentulose and h 100.0 2E-44 4.3E-49 368.9 32.6 490 54-609 8-544 (545)
23 PF02782 FGGY_C: FGGY family o 100.0 5.3E-32 1.2E-36 264.8 17.4 196 352-563 1-198 (198)
24 TIGR00241 CoA_E_activ CoA-subs 98.5 1.3E-07 2.9E-12 95.8 7.1 71 480-558 176-248 (248)
25 TIGR02259 benz_CoA_red_A benzo 98.4 2.7E-06 5.8E-11 89.2 13.3 75 479-559 352-432 (432)
26 TIGR00241 CoA_E_activ CoA-subs 98.0 8.4E-06 1.8E-10 82.7 7.1 68 56-137 1-69 (248)
27 COG1940 NagC Transcriptional r 97.7 0.00026 5.5E-09 74.4 10.7 78 54-142 5-82 (314)
28 PRK13317 pantothenate kinase; 97.6 0.0017 3.6E-08 66.8 15.7 124 423-560 140-273 (277)
29 PRK09698 D-allose kinase; Prov 97.4 0.0014 2.9E-08 68.5 11.5 73 55-141 4-76 (302)
30 TIGR00744 ROK_glcA_fam ROK fam 97.3 0.0013 2.8E-08 69.1 10.5 86 58-163 1-87 (318)
31 PRK13311 N-acetyl-D-glucosamin 97.2 0.0021 4.5E-08 65.5 10.3 73 56-143 1-74 (256)
32 TIGR03192 benz_CoA_bzdQ benzoy 97.1 0.0014 3E-08 67.3 8.1 75 480-561 212-288 (293)
33 TIGR03286 methan_mark_15 putat 97.1 0.0018 3.8E-08 69.1 8.9 73 481-559 328-401 (404)
34 PF05378 Hydant_A_N: Hydantoin 97.1 0.00056 1.2E-08 65.5 4.4 77 58-145 2-79 (176)
35 COG2971 Predicted N-acetylgluc 97.1 0.0016 3.5E-08 66.4 7.6 71 53-129 3-74 (301)
36 PF00480 ROK: ROK family; Int 97.0 0.0022 4.7E-08 61.3 8.1 87 59-170 1-88 (179)
37 smart00732 YqgFc Likely ribonu 97.0 0.00083 1.8E-08 57.6 4.5 30 57-86 3-32 (99)
38 PRK09557 fructokinase; Reviewe 96.9 0.0049 1.1E-07 64.3 10.4 75 56-145 1-76 (301)
39 TIGR02261 benz_CoA_red_D benzo 96.9 0.0032 7E-08 63.7 8.6 74 480-559 183-262 (262)
40 TIGR03192 benz_CoA_bzdQ benzoy 96.9 0.0034 7.4E-08 64.4 8.6 63 56-131 33-95 (293)
41 PRK13410 molecular chaperone D 96.9 0.0028 6.1E-08 73.3 8.9 83 481-566 295-381 (668)
42 PRK13310 N-acetyl-D-glucosamin 96.9 0.0052 1.1E-07 64.1 10.1 74 56-144 1-75 (303)
43 CHL00094 dnaK heat shock prote 96.8 0.0034 7.4E-08 72.2 8.7 54 514-567 328-382 (621)
44 PF01869 BcrAD_BadFG: BadF/Bad 96.8 0.0029 6.2E-08 65.0 7.1 67 58-129 1-67 (271)
45 COG1924 Activator of 2-hydroxy 96.6 0.0067 1.5E-07 63.4 8.0 73 480-560 314-389 (396)
46 PTZ00186 heat shock 70 kDa pre 96.6 0.0074 1.6E-07 69.6 9.1 81 481-564 320-404 (657)
47 PRK13318 pantothenate kinase; 96.5 0.009 2E-07 60.9 8.2 62 57-130 2-63 (258)
48 PRK00290 dnaK molecular chaper 96.5 0.0084 1.8E-07 69.1 8.8 86 480-565 292-378 (627)
49 PRK13321 pantothenate kinase; 96.5 0.0076 1.7E-07 61.4 7.5 62 57-130 2-63 (256)
50 PF14574 DUF4445: Domain of un 96.5 0.0058 1.3E-07 66.0 6.8 86 56-141 2-103 (412)
51 TIGR02529 EutJ ethanolamine ut 96.4 0.0074 1.6E-07 60.8 6.9 67 486-557 171-238 (239)
52 PRK15080 ethanolamine utilizat 96.4 0.011 2.5E-07 60.5 8.3 70 484-558 196-266 (267)
53 TIGR03286 methan_mark_15 putat 96.3 0.013 2.7E-07 62.7 8.4 20 389-408 268-287 (404)
54 TIGR01991 HscA Fe-S protein as 96.3 0.013 2.8E-07 67.2 8.8 85 480-564 278-363 (599)
55 PRK05183 hscA chaperone protei 96.3 0.014 2.9E-07 67.2 8.9 81 481-564 295-379 (616)
56 TIGR02350 prok_dnaK chaperone 96.2 0.012 2.5E-07 67.5 8.3 81 482-565 292-376 (595)
57 PRK01433 hscA chaperone protei 96.2 0.017 3.6E-07 66.0 9.1 80 481-562 277-357 (595)
58 TIGR02261 benz_CoA_red_D benzo 96.2 0.015 3.3E-07 58.9 7.6 68 56-132 2-70 (262)
59 COG1924 Activator of 2-hydroxy 96.1 0.018 4E-07 60.2 8.2 20 389-408 256-275 (396)
60 PF00012 HSP70: Hsp70 protein; 96.1 0.011 2.4E-07 67.8 7.1 83 482-564 296-379 (602)
61 TIGR00555 panK_eukar pantothen 96.0 0.27 5.8E-06 50.5 15.7 122 422-557 144-278 (279)
62 PRK00292 glk glucokinase; Prov 96.0 0.029 6.3E-07 59.0 9.0 33 54-86 1-34 (316)
63 PRK13928 rod shape-determining 95.9 0.019 4.1E-07 60.9 7.2 80 482-561 240-323 (336)
64 PTZ00400 DnaK-type molecular c 95.8 0.022 4.7E-07 66.0 7.7 82 480-564 333-418 (663)
65 PRK05082 N-acetylmannosamine k 95.7 0.06 1.3E-06 55.8 9.9 60 57-130 3-62 (291)
66 PLN03184 chloroplast Hsp70; Pr 95.6 0.032 7E-07 64.7 8.5 81 481-564 332-416 (673)
67 PTZ00009 heat shock 70 kDa pro 95.6 0.032 7E-07 64.6 8.0 81 481-564 299-384 (653)
68 PRK11678 putative chaperone; P 95.4 0.075 1.6E-06 58.6 10.0 81 478-561 366-447 (450)
69 PRK13411 molecular chaperone D 95.2 0.044 9.6E-07 63.4 7.7 82 481-565 294-380 (653)
70 PRK12408 glucokinase; Provisio 94.9 0.03 6.5E-07 59.4 4.7 23 55-77 16-38 (336)
71 PRK13927 rod shape-determining 94.8 0.059 1.3E-06 57.0 6.8 80 482-561 241-324 (334)
72 PF00349 Hexokinase_1: Hexokin 94.7 0.21 4.5E-06 49.1 9.8 74 55-130 63-138 (206)
73 PRK14101 bifunctional glucokin 94.7 0.065 1.4E-06 62.0 7.2 60 54-129 17-76 (638)
74 smart00842 FtsA Cell division 94.6 0.2 4.4E-06 48.3 9.5 72 57-132 1-77 (187)
75 PRK09472 ftsA cell division pr 94.5 0.23 5E-06 54.4 10.6 64 482-545 289-359 (420)
76 KOG1794 N-Acetylglucosamine ki 94.3 0.22 4.8E-06 50.5 8.8 71 54-129 2-73 (336)
77 PRK13930 rod shape-determining 94.2 0.092 2E-06 55.5 6.5 80 482-561 245-328 (335)
78 TIGR00904 mreB cell shape dete 94.1 0.13 2.7E-06 54.6 7.1 79 483-561 245-327 (333)
79 TIGR02707 butyr_kinase butyrat 93.6 0.17 3.6E-06 54.0 7.1 56 491-546 269-327 (351)
80 PRK13929 rod-share determining 93.4 0.15 3.2E-06 54.2 6.2 76 483-558 244-323 (335)
81 PRK15080 ethanolamine utilizat 93.2 0.42 9.1E-06 49.0 9.0 63 54-118 23-85 (267)
82 KOG0103 Molecular chaperones H 93.2 0.23 5.1E-06 55.7 7.5 81 482-562 301-382 (727)
83 PRK09472 ftsA cell division pr 93.1 0.39 8.4E-06 52.7 9.1 76 53-132 6-86 (420)
84 PRK09585 anmK anhydro-N-acetyl 93.0 0.37 8E-06 51.4 8.5 59 482-546 260-318 (365)
85 PRK13317 pantothenate kinase; 93.0 0.23 5.1E-06 51.1 6.8 29 54-82 1-29 (277)
86 PLN02920 pantothenate kinase 1 93.0 4 8.8E-05 43.7 16.0 166 351-559 167-350 (398)
87 TIGR01174 ftsA cell division p 92.6 0.62 1.3E-05 50.1 9.8 62 482-546 281-346 (371)
88 PF03702 UPF0075: Uncharacteri 92.3 0.62 1.4E-05 49.7 9.0 76 482-563 258-339 (364)
89 KOG0100 Molecular chaperones G 91.9 0.44 9.6E-06 50.2 7.1 54 513-566 361-416 (663)
90 TIGR03123 one_C_unchar_1 proba 91.9 0.34 7.3E-06 50.7 6.3 31 58-88 1-31 (318)
91 PF11104 PilM_2: Type IV pilus 91.2 0.45 9.7E-06 50.6 6.6 58 489-546 247-306 (340)
92 TIGR00749 glk glucokinase, pro 90.6 0.45 9.7E-06 50.0 5.9 24 58-81 1-24 (316)
93 COG0443 DnaK Molecular chapero 90.4 0.88 1.9E-05 51.9 8.3 55 513-567 308-363 (579)
94 PF13941 MutL: MutL protein 90.3 1.1 2.3E-05 49.3 8.5 54 57-119 2-58 (457)
95 PLN02914 hexokinase 90.1 0.87 1.9E-05 50.5 7.7 62 54-117 94-158 (490)
96 PTZ00288 glucokinase 1; Provis 89.8 2.1 4.5E-05 46.6 10.2 71 53-129 24-98 (405)
97 PF01869 BcrAD_BadFG: BadF/Bad 89.5 1.6 3.6E-05 44.5 8.8 69 491-559 196-271 (271)
98 PRK13324 pantothenate kinase; 89.2 1.2 2.6E-05 45.4 7.3 62 57-129 2-63 (258)
99 PF02543 CmcH_NodU: Carbamoylt 89.1 1.7 3.6E-05 46.6 8.7 80 482-565 134-217 (360)
100 COG2377 Predicted molecular ch 89.1 2 4.4E-05 45.2 9.0 57 482-544 264-321 (371)
101 TIGR01175 pilM type IV pilus a 88.3 1.1 2.3E-05 47.7 6.7 57 490-546 256-314 (348)
102 PLN02362 hexokinase 88.1 1.4 3.1E-05 49.1 7.7 62 55-118 95-159 (509)
103 PF03630 Fumble: Fumble ; Int 88.1 4.4 9.5E-05 43.0 11.0 165 351-558 158-339 (341)
104 TIGR01174 ftsA cell division p 88.1 1 2.2E-05 48.4 6.4 73 57-132 2-78 (371)
105 PLN02405 hexokinase 88.0 1.6 3.4E-05 48.7 7.8 61 55-117 95-158 (497)
106 PLN02596 hexokinase-like 88.0 1.5 3.2E-05 48.7 7.6 61 55-117 96-159 (490)
107 COG2192 Predicted carbamoyl tr 87.5 1.5 3.3E-05 48.5 7.2 80 482-565 257-339 (555)
108 KOG0101 Molecular chaperones H 87.3 1.3 2.7E-05 50.2 6.6 74 490-567 314-389 (620)
109 PLN02666 5-oxoprolinase 86.8 1 2.2E-05 55.6 6.0 86 54-146 8-100 (1275)
110 PTZ00107 hexokinase; Provision 86.7 3.1 6.7E-05 46.0 9.2 63 55-117 74-144 (464)
111 TIGR00555 panK_eukar pantothen 86.7 2.7 5.8E-05 43.3 8.1 57 57-132 2-58 (279)
112 TIGR02529 EutJ ethanolamine ut 86.6 1.8 4E-05 43.5 6.9 52 59-113 1-53 (239)
113 TIGR03281 methan_mark_12 putat 86.4 1.7 3.7E-05 44.7 6.4 67 490-561 242-311 (326)
114 PF06723 MreB_Mbl: MreB/Mbl pr 86.3 0.58 1.2E-05 49.3 3.2 42 517-558 276-318 (326)
115 TIGR01175 pilM type IV pilus a 86.3 3.9 8.4E-05 43.4 9.6 72 55-132 3-78 (348)
116 COG4972 PilM Tfp pilus assembl 86.2 1.7 3.8E-05 45.1 6.3 59 489-547 260-320 (354)
117 COG4820 EutJ Ethanolamine util 86.1 2.3 5E-05 41.0 6.7 64 491-559 208-272 (277)
118 COG0145 HyuA N-methylhydantoin 86.0 1.4 3E-05 51.0 6.2 76 55-143 2-78 (674)
119 COG4020 Uncharacterized protei 85.8 2.4 5.2E-05 42.2 6.8 63 55-131 3-65 (332)
120 PTZ00340 O-sialoglycoprotein e 85.3 3.5 7.6E-05 43.7 8.4 78 56-134 2-81 (345)
121 PRK13326 pantothenate kinase; 85.2 2.7 5.9E-05 42.9 7.3 59 492-559 194-253 (262)
122 PRK09604 UGMP family protein; 85.1 2.3 5.1E-05 45.0 7.1 79 56-134 2-83 (332)
123 PRK03011 butyrate kinase; Prov 85.0 2.5 5.4E-05 45.2 7.2 66 491-556 271-342 (358)
124 PRK14878 UGMP family protein; 84.9 3.1 6.6E-05 43.9 7.8 75 58-134 1-76 (323)
125 COG0849 ftsA Cell division ATP 84.1 6.3 0.00014 43.0 9.8 66 482-547 288-353 (418)
126 TIGR00143 hypF [NiFe] hydrogen 83.6 2.2 4.7E-05 49.8 6.5 75 482-560 630-711 (711)
127 COG0533 QRI7 Metal-dependent p 83.3 5.7 0.00012 41.7 8.7 70 491-563 239-312 (342)
128 COG3734 DgoK 2-keto-3-deoxy-ga 82.7 1.8 4E-05 43.9 4.7 34 52-85 2-35 (306)
129 PRK13320 pantothenate kinase; 82.4 4.1 9E-05 41.1 7.2 58 492-558 182-239 (244)
130 PF11104 PilM_2: Type IV pilus 82.3 4.5 9.8E-05 42.9 7.9 68 59-132 1-72 (340)
131 PRK13331 pantothenate kinase; 82.3 3.8 8.3E-05 41.5 6.9 59 492-559 182-247 (251)
132 PF07318 DUF1464: Protein of u 81.2 3.7 8E-05 43.2 6.5 76 490-569 240-324 (343)
133 TIGR00671 baf pantothenate kin 81.0 4.6 9.9E-05 40.8 7.0 29 58-87 2-30 (243)
134 PRK09605 bifunctional UGMP fam 81.0 5.8 0.00012 44.9 8.6 76 56-132 2-78 (535)
135 PTZ00340 O-sialoglycoprotein e 80.5 6.9 0.00015 41.5 8.4 58 489-547 239-299 (345)
136 COG3426 Butyrate kinase [Energ 80.3 7.8 0.00017 39.5 8.0 60 491-550 272-335 (358)
137 PF07318 DUF1464: Protein of u 80.2 2.5 5.4E-05 44.4 4.9 58 59-134 1-58 (343)
138 PRK09604 UGMP family protein; 80.2 7.7 0.00017 41.1 8.7 78 483-564 227-311 (332)
139 TIGR03723 bact_gcp putative gl 79.3 6.2 0.00013 41.5 7.6 78 57-134 1-81 (314)
140 PLN02902 pantothenate kinase 79.1 48 0.001 39.3 15.0 166 351-559 216-399 (876)
141 COG3894 Uncharacterized metal- 78.4 4.6 0.0001 44.1 6.2 32 54-85 163-195 (614)
142 TIGR03722 arch_KAE1 universal 78.1 5.8 0.00013 41.8 7.0 75 58-133 1-76 (322)
143 PRK00109 Holliday junction res 78.1 22 0.00047 32.6 9.8 23 56-78 5-27 (138)
144 TIGR00329 gcp_kae1 metallohydr 76.9 7.6 0.00016 40.6 7.4 77 58-134 1-80 (305)
145 PTZ00297 pantothenate kinase; 75.7 75 0.0016 40.5 16.6 74 482-559 1363-1444(1452)
146 PRK00976 hypothetical protein; 74.5 13 0.00029 39.0 8.2 67 490-562 244-312 (326)
147 KOG0104 Molecular chaperones G 74.5 7.1 0.00015 44.8 6.6 83 481-566 331-418 (902)
148 PRK09605 bifunctional UGMP fam 73.6 11 0.00023 42.7 8.1 70 490-560 222-298 (535)
149 COG5026 Hexokinase [Carbohydra 72.8 9.1 0.0002 41.4 6.6 61 55-117 75-137 (466)
150 TIGR03706 exo_poly_only exopol 71.1 12 0.00027 38.8 7.3 72 57-131 2-80 (300)
151 PRK03011 butyrate kinase; Prov 71.0 19 0.00042 38.5 8.8 68 56-129 3-73 (358)
152 PRK14878 UGMP family protein; 70.8 11 0.00024 39.7 6.9 72 484-560 215-289 (323)
153 COG1548 Predicted transcriptio 70.8 9.1 0.0002 38.5 5.6 62 493-559 258-327 (330)
154 TIGR00329 gcp_kae1 metallohydr 69.7 10 0.00022 39.6 6.3 60 483-546 231-293 (305)
155 PRK10854 exopolyphosphatase; P 69.6 18 0.00039 40.7 8.6 74 55-131 11-91 (513)
156 TIGR03723 bact_gcp putative gl 69.3 17 0.00036 38.2 7.8 61 483-547 232-295 (314)
157 TIGR03722 arch_KAE1 universal 68.9 15 0.00032 38.8 7.3 60 483-546 215-277 (322)
158 TIGR03725 bact_YeaZ universal 68.7 13 0.00028 36.2 6.4 63 57-132 1-63 (202)
159 PRK00976 hypothetical protein; 68.3 15 0.00032 38.7 6.9 63 56-135 2-66 (326)
160 KOG0102 Molecular chaperones m 67.5 5.2 0.00011 44.2 3.5 64 504-567 340-407 (640)
161 KOG2707 Predicted metalloprote 66.5 16 0.00035 38.4 6.6 80 57-136 34-116 (405)
162 COG1521 Pantothenate kinase ty 65.2 15 0.00032 37.3 6.0 59 492-559 190-248 (251)
163 PF14450 FtsA: Cell division p 64.7 11 0.00023 33.5 4.6 56 57-113 1-59 (120)
164 COG4972 PilM Tfp pilus assembl 64.1 20 0.00044 37.4 6.8 61 56-121 11-75 (354)
165 TIGR01319 glmL_fam conserved h 63.9 18 0.00039 39.8 6.8 64 60-132 1-69 (463)
166 KOG1794 N-Acetylglucosamine ki 63.6 24 0.00052 36.3 7.1 76 490-565 237-320 (336)
167 COG0248 GppA Exopolyphosphatas 63.3 11 0.00024 42.0 5.2 74 55-131 3-83 (492)
168 PRK11031 guanosine pentaphosph 62.8 31 0.00067 38.7 8.7 75 54-131 5-86 (496)
169 PF02601 Exonuc_VII_L: Exonucl 61.2 37 0.0008 35.6 8.6 29 514-542 75-108 (319)
170 KOG1369 Hexokinase [Carbohydra 60.9 38 0.00082 37.5 8.6 62 55-118 86-149 (474)
171 PRK00290 dnaK molecular chaper 60.6 7 0.00015 45.2 3.2 22 55-77 2-23 (627)
172 PF00871 Acetate_kinase: Aceto 60.5 22 0.00048 38.5 6.8 54 491-544 296-352 (388)
173 PF07736 CM_1: Chorismate muta 60.2 14 0.0003 32.7 4.2 39 96-134 12-50 (118)
174 COG0068 HypF Hydrogenase matur 59.9 38 0.00081 39.0 8.5 75 481-559 664-745 (750)
175 PF03652 UPF0081: Uncharacteri 59.9 35 0.00075 31.1 7.0 23 56-78 2-24 (135)
176 COG0533 QRI7 Metal-dependent p 59.2 27 0.00059 36.8 6.9 80 56-136 2-84 (342)
177 COG0849 ftsA Cell division ATP 59.2 37 0.0008 37.1 8.2 73 56-131 7-83 (418)
178 COG4820 EutJ Ethanolamine util 57.1 26 0.00057 34.0 5.8 23 55-77 29-51 (277)
179 COG1214 Inactive homolog of me 56.8 24 0.00053 35.0 5.9 65 56-132 2-67 (220)
180 PRK12440 acetate kinase; Revie 56.2 16 0.00035 39.4 4.8 47 492-539 298-346 (397)
181 CHL00094 dnaK heat shock prote 56.0 8.9 0.00019 44.3 3.1 22 55-77 2-23 (621)
182 PRK09557 fructokinase; Reviewe 55.4 48 0.001 34.3 8.2 67 492-559 223-299 (301)
183 PF01548 DEDD_Tnp_IS110: Trans 55.1 26 0.00057 31.7 5.5 30 57-86 1-30 (144)
184 PF04312 DUF460: Protein of un 54.9 37 0.0008 30.9 6.1 32 54-86 31-62 (138)
185 PRK00039 ruvC Holliday junctio 54.3 80 0.0017 29.8 8.7 62 56-129 3-67 (164)
186 PRK13410 molecular chaperone D 53.8 11 0.00024 43.8 3.4 23 55-78 2-24 (668)
187 PTZ00009 heat shock 70 kDa pro 53.6 11 0.00025 43.7 3.4 23 52-74 1-23 (653)
188 cd02185 AroH Chorismate mutase 53.0 21 0.00045 31.5 4.1 38 96-133 12-49 (117)
189 PRK13411 molecular chaperone D 52.3 12 0.00026 43.5 3.3 22 55-77 2-23 (653)
190 TIGR01796 CM_mono_aroH monofun 52.1 22 0.00048 31.4 4.1 38 96-133 12-49 (117)
191 PLN03184 chloroplast Hsp70; Pr 51.8 15 0.00033 42.8 4.1 21 54-74 38-58 (673)
192 PF14639 YqgF: Holliday-juncti 51.6 37 0.00079 31.6 5.8 30 55-84 5-38 (150)
193 PF02075 RuvC: Crossover junct 50.8 54 0.0012 30.3 6.8 61 57-129 1-64 (149)
194 PF03727 Hexokinase_2: Hexokin 50.6 28 0.00062 35.0 5.4 81 482-563 143-242 (243)
195 PRK13310 N-acetyl-D-glucosamin 49.4 73 0.0016 32.9 8.4 68 492-560 224-301 (303)
196 TIGR00250 RNAse_H_YqgF RNAse H 49.4 1.2E+02 0.0027 27.2 8.8 21 58-78 1-21 (130)
197 COG0443 DnaK Molecular chapero 48.2 16 0.00034 41.8 3.4 22 55-76 5-26 (579)
198 COG2441 Predicted butyrate kin 47.4 32 0.00069 35.1 4.9 42 58-105 1-43 (374)
199 PRK11678 putative chaperone; P 47.1 15 0.00031 40.8 2.8 20 57-77 2-21 (450)
200 PF03309 Pan_kinase: Type III 46.7 53 0.0012 32.0 6.5 19 57-75 1-19 (206)
201 PTZ00186 heat shock 70 kDa pre 46.5 18 0.0004 42.0 3.6 21 55-75 27-47 (657)
202 PRK05082 N-acetylmannosamine k 46.2 79 0.0017 32.4 8.0 67 492-559 212-286 (291)
203 TIGR03281 methan_mark_12 putat 45.7 14 0.0003 38.3 2.1 23 57-79 1-23 (326)
204 PF05035 DGOK: 2-keto-3-deoxy- 44.5 21 0.00046 36.9 3.4 65 492-559 222-286 (287)
205 PRK14101 bifunctional glucokin 44.0 95 0.0021 36.0 9.0 73 492-565 247-334 (638)
206 PRK13917 plasmid segregation p 44.0 75 0.0016 33.8 7.6 45 513-560 290-335 (344)
207 TIGR00016 ackA acetate kinase. 43.8 84 0.0018 34.2 7.8 48 492-539 304-353 (404)
208 TIGR02350 prok_dnaK chaperone 43.5 18 0.00039 41.6 2.9 20 57-77 2-21 (595)
209 COG2183 Tex Transcriptional ac 43.5 58 0.0013 38.1 6.8 66 53-131 328-394 (780)
210 TIGR02707 butyr_kinase butyrat 43.4 87 0.0019 33.5 7.9 66 57-129 2-71 (351)
211 PF00012 HSP70: Hsp70 protein; 43.2 16 0.00034 41.9 2.4 18 57-74 1-18 (602)
212 PRK07058 acetate kinase; Provi 42.5 35 0.00077 36.8 4.7 48 491-539 295-344 (396)
213 PF02685 Glucokinase: Glucokin 42.3 35 0.00076 35.9 4.7 46 515-560 255-314 (316)
214 COG0837 Glk Glucokinase [Carbo 41.9 1.1E+02 0.0024 31.8 7.8 45 516-560 260-318 (320)
215 PTZ00107 hexokinase; Provision 41.5 1.5E+02 0.0032 33.0 9.6 81 482-563 366-461 (464)
216 PRK05183 hscA chaperone protei 40.9 21 0.00046 41.2 3.1 20 55-74 19-38 (616)
217 KOG1369 Hexokinase [Carbohydra 40.8 48 0.001 36.7 5.5 88 475-564 367-469 (474)
218 PRK01433 hscA chaperone protei 40.7 32 0.00069 39.6 4.4 22 55-77 19-40 (595)
219 PRK00180 acetate kinase A/prop 40.7 99 0.0022 33.6 7.8 48 492-539 300-349 (402)
220 cd00529 RuvC_resolvase Hollida 40.3 1.4E+02 0.0031 27.6 8.0 54 57-117 2-58 (154)
221 COG4012 Uncharacterized protei 38.6 85 0.0018 31.9 6.3 47 57-112 229-275 (342)
222 TIGR01865 cas_Csn1 CRISPR-asso 37.6 24 0.00051 42.1 2.8 23 55-77 1-23 (805)
223 PF06757 Ins_allergen_rp: Inse 37.5 1.3E+02 0.0029 28.6 7.5 89 501-619 59-152 (179)
224 PLN02405 hexokinase 37.5 1.6E+02 0.0034 33.1 9.0 75 489-563 394-490 (497)
225 TIGR00744 ROK_glcA_fam ROK fam 36.9 1.1E+02 0.0024 31.7 7.5 69 491-560 229-309 (318)
226 PRK00286 xseA exodeoxyribonucl 36.7 1.1E+02 0.0025 33.6 7.8 28 515-542 193-225 (438)
227 COG1077 MreB Actin-like ATPase 36.7 41 0.00089 35.2 3.9 74 483-556 249-326 (342)
228 PTZ00400 DnaK-type molecular c 36.7 28 0.00062 40.5 3.2 19 56-74 42-60 (663)
229 COG5012 Predicted cobalamin bi 36.4 57 0.0012 32.3 4.7 47 492-538 163-210 (227)
230 TIGR00904 mreB cell shape dete 35.5 27 0.00059 36.7 2.6 21 58-79 5-25 (333)
231 COG0816 Predicted endonuclease 35.0 63 0.0014 29.7 4.5 22 55-76 2-23 (141)
232 PRK13322 pantothenate kinase; 34.7 32 0.00069 34.8 2.8 59 492-560 184-243 (246)
233 PLN02914 hexokinase 34.6 2E+02 0.0044 32.2 9.2 82 481-563 385-488 (490)
234 TIGR00237 xseA exodeoxyribonuc 33.7 1.6E+02 0.0035 32.4 8.3 29 514-542 187-220 (432)
235 PF01968 Hydantoinase_A: Hydan 33.6 55 0.0012 33.9 4.4 65 491-557 214-283 (290)
236 PRK12408 glucokinase; Provisio 32.8 1E+02 0.0022 32.6 6.4 47 514-560 271-332 (336)
237 PRK13328 pantothenate kinase; 32.7 1.8E+02 0.0038 29.6 7.8 61 492-560 192-252 (255)
238 PRK07157 acetate kinase; Provi 32.7 58 0.0013 35.3 4.5 48 492-539 297-346 (400)
239 PF08735 DUF1786: Putative pyr 32.0 1.1E+02 0.0024 30.9 6.1 47 56-111 168-214 (254)
240 PRK13928 rod shape-determining 31.9 29 0.00063 36.6 2.1 22 58-80 6-27 (336)
241 KOG1385 Nucleoside phosphatase 31.8 77 0.0017 34.3 5.1 64 54-117 66-134 (453)
242 TIGR01991 HscA Fe-S protein as 31.5 32 0.00068 39.6 2.5 18 57-74 1-18 (599)
243 PRK13329 pantothenate kinase; 31.5 1.9E+02 0.0041 29.2 7.8 60 492-560 185-245 (249)
244 PF00871 Acetate_kinase: Aceto 31.5 41 0.00089 36.5 3.1 29 57-85 2-31 (388)
245 PRK07058 acetate kinase; Provi 31.3 1.6E+02 0.0034 32.0 7.4 32 52-83 1-35 (396)
246 PRK09585 anmK anhydro-N-acetyl 30.9 1.2E+02 0.0027 32.5 6.6 75 56-132 3-99 (365)
247 PRK12397 propionate kinase; Re 29.6 71 0.0015 34.7 4.5 47 492-538 299-346 (404)
248 PRK13327 pantothenate kinase; 29.0 2.5E+02 0.0054 28.3 8.1 62 492-563 178-240 (242)
249 PRK09698 D-allose kinase; Prov 29.0 2.6E+02 0.0055 28.8 8.6 65 491-560 218-295 (302)
250 TIGR00016 ackA acetate kinase. 29.0 79 0.0017 34.4 4.7 28 56-83 5-34 (404)
251 KOG1386 Nucleoside phosphatase 28.9 1.6E+02 0.0034 32.7 6.9 65 53-117 7-78 (501)
252 KOG2708 Predicted metalloprote 27.2 1.6E+02 0.0035 29.3 6.0 74 57-131 4-78 (336)
253 PLN02596 hexokinase-like 26.1 1.5E+02 0.0032 33.2 6.4 87 475-563 382-485 (490)
254 PRK07157 acetate kinase; Provi 25.8 2.5E+02 0.0054 30.6 7.8 27 57-83 5-32 (400)
255 PF03702 UPF0075: Uncharacteri 25.8 1.9E+02 0.0041 31.1 6.9 79 55-138 1-99 (364)
256 cd07207 Pat_ExoU_VipD_like Exo 25.5 1.1E+02 0.0024 29.1 4.8 48 517-565 1-48 (194)
257 COG2971 Predicted N-acetylgluc 25.4 3.3E+02 0.007 28.4 8.2 68 491-564 226-294 (301)
258 PRK13929 rod-share determining 25.2 55 0.0012 34.6 2.8 13 57-69 6-18 (335)
259 COG3513 Predicted CRISPR-assoc 25.1 57 0.0012 38.1 2.9 24 52-75 1-24 (1088)
260 PRK13328 pantothenate kinase; 25.0 68 0.0015 32.6 3.3 24 57-80 3-26 (255)
261 PRK13326 pantothenate kinase; 24.7 2.8E+02 0.006 28.3 7.7 30 56-86 7-36 (262)
262 PRK12379 propionate/acetate ki 24.4 2.5E+02 0.0055 30.4 7.5 46 492-538 295-342 (396)
263 PRK12440 acetate kinase; Revie 24.1 2.8E+02 0.006 30.2 7.7 32 52-83 1-33 (397)
264 KOG2707 Predicted metalloprote 23.9 2.1E+02 0.0045 30.4 6.4 74 492-566 279-359 (405)
265 PF07066 DUF3882: Lactococcus 23.7 4.7E+02 0.01 24.2 7.8 57 55-119 2-63 (159)
266 PRK00292 glk glucokinase; Prov 23.3 1.8E+02 0.0038 30.3 6.2 48 513-560 252-314 (316)
267 PF06723 MreB_Mbl: MreB/Mbl pr 23.2 43 0.00094 35.3 1.5 24 57-81 3-26 (326)
268 COG1660 Predicted P-loop-conta 23.1 1.9E+02 0.0041 29.5 5.8 80 451-540 185-270 (286)
269 PF00591 Glycos_transf_3: Glyc 23.0 1.9E+02 0.004 29.2 6.0 83 517-601 5-93 (252)
270 PF07592 DDE_Tnp_ISAZ013: Rhod 22.6 3.7E+02 0.008 28.2 8.0 73 466-548 142-223 (311)
271 PRK13930 rod shape-determining 22.5 57 0.0012 34.2 2.3 15 58-72 11-25 (335)
272 PRK11031 guanosine pentaphosph 22.1 2.5E+02 0.0055 31.5 7.4 30 57-87 134-163 (496)
273 COG2012 RPB5 DNA-directed RNA 21.9 76 0.0016 25.9 2.2 33 265-313 27-59 (80)
274 PTZ00288 glucokinase 1; Provis 21.2 3.9E+02 0.0084 29.2 8.3 50 513-562 322-391 (405)
275 PF06406 StbA: StbA protein; 21.2 4.5E+02 0.0098 27.4 8.7 39 514-554 272-314 (318)
276 TIGR03706 exo_poly_only exopol 20.8 3.4E+02 0.0075 28.0 7.7 30 57-87 127-156 (300)
277 COG2441 Predicted butyrate kin 20.7 2.3E+02 0.0051 29.1 5.9 77 489-571 253-343 (374)
278 PRK08557 hypothetical protein; 20.7 86 0.0019 34.4 3.2 57 155-214 317-380 (417)
279 TIGR03492 conserved hypothetic 20.6 2.6E+02 0.0055 30.3 6.9 55 488-547 67-121 (396)
280 PRK12379 propionate/acetate ki 20.5 1.4E+02 0.0031 32.4 4.7 30 55-84 5-35 (396)
281 COG1940 NagC Transcriptional r 20.5 3.4E+02 0.0074 28.0 7.7 69 492-561 226-307 (314)
282 PF04848 Pox_A22: Poxvirus A22 20.2 1.8E+02 0.004 26.7 4.7 25 56-80 2-26 (143)
283 cd00012 ACTIN Actin; An ubiqui 20.2 60 0.0013 34.6 1.9 47 515-561 290-347 (371)
284 PRK12397 propionate kinase; Re 20.1 3.8E+02 0.0083 29.2 7.8 32 52-84 1-33 (404)
285 PF01191 RNA_pol_Rpb5_C: RNA p 20.0 97 0.0021 25.1 2.5 34 265-314 21-54 (74)
No 1
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=1.1e-93 Score=800.56 Aligned_cols=531 Identities=45% Similarity=0.773 Sum_probs=445.0
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (621)
++||||+|||++|+++||.+|+++.+.+.+++... .+|+.||||++||+++++++++++++.+.+..+|++||||+|++
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~~Igis~~~s 80 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDSTGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVKGIGFDATCS 80 (541)
T ss_pred CEEEEEecCcCEEEEEEcCCCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheEEEEeccccc
Confidence 37999999999999999999999999999988654 88999999999999999999999998777778899999999999
Q ss_pred eEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhccee
Q 007010 135 LVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM 214 (621)
Q Consensus 135 ~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l 214 (621)
+|+||++|+||....+.++.+|+|+|+|.|+.++++++++...+++++||+++++.++++||+|+++|+||+|+++++|+
T Consensus 81 ~v~~D~~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l 160 (541)
T TIGR01315 81 LVVLTHDGEPLPVSKNGGADQNIILWMDHRALAEAEKINATNHNLLRYVGGKMSVEMEIPKVLWLKNNMPPELFARCKFF 160 (541)
T ss_pred ceEEcCCCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHHHHHHHHhCCeeCcchhHHHHHHHHHhChHHHHHhhhhc
Confidence 99999999999655555556799999999999999999764457889999999999999999999999999999999999
Q ss_pred cchhHHhhhhccccccccccccccccccccchhhccccccccc---CCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010 215 DLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRD---MEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (621)
Q Consensus 215 ~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D---~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~ 291 (621)
+++|||.|+|||+...+..+ ++.+++|| +++++||+++++.+||+......||++.|+++++
T Consensus 161 ~~~dyl~~~LTG~~~~d~~~---------------as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~~ 225 (541)
T TIGR01315 161 DLTDFLTWRATGKEIRSFCS---------------VVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMSP 225 (541)
T ss_pred chhhhheeeeecchhHhHhH---------------HhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccCC
Confidence 99999999999987533322 22334566 7999999999999999952111244444589999
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhccccc--ccCccchhhhhhhhhhccceEEEEecccceecceeCcc
Q 007010 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVME--SVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 369 (621)
Q Consensus 292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g--~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~ 369 (621)
++++|+.|++++|+++||++||||++|++|++|+++|+++ ..++| ..++ ..+++.+++|||+++..+.+++
T Consensus 226 ~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g---~~~~----~~~~~~~~~GTs~~~~~~~~~~ 298 (541)
T TIGR01315 226 GELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENG---DVSQ----AFTRLAAVAGTSTCHMAMTKGP 298 (541)
T ss_pred CcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccc---cccC----CCCcEEEEecCceEEEEecCCC
Confidence 9999933999999999999999999999999999999844 24432 0000 0237889999999988888776
Q ss_pred cccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCC-C-ccC
Q 007010 370 LFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP-F-VAA 447 (621)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p-~-~~~ 447 (621)
..+++.+.++.++..++.|+.+++++++|.+++||++.+...++........+.+.|++|++.++++... +| . +|+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~ 376 (541)
T TIGR01315 299 VFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAK--TNAPSISY 376 (541)
T ss_pred ccCCceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhh--cccCcccc
Confidence 6666544333234567889999999999999999999763211111111122345687777765544321 11 0 113
Q ss_pred CCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCC
Q 007010 448 LTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN 527 (621)
Q Consensus 448 g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s 527 (621)
+++|++|+|||.|+|+|+||+++||+|+||+.+|++.++++++||++|||||.+|++++.|++.+.++++|+++||+++|
T Consensus 377 ~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s 456 (541)
T TIGR01315 377 LVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQN 456 (541)
T ss_pred CCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccC
Confidence 45899999999999999999999999999999999988788899999999999999999999888889999999999999
Q ss_pred HHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhH-HHHHHHHHHHHHHH
Q 007010 528 PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVK-KYHDAKYLIFRELF 606 (621)
Q Consensus 528 ~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~-~~y~~~y~~y~~l~ 606 (621)
++|+||+|||+|+||+++...|++++|||++|++++|.|+|++++.+.+.+..++|+| +++.+ +.|+++|++|+++|
T Consensus 457 ~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~~Y~~~y~~y~~l~ 534 (541)
T TIGR01315 457 PLLMQLIADACDMPVLIPYVNEAVLHGAAMLGAKAAGTTESLWDAMDRMSKPGKTVWP--RGDPAKKLHDRKYEIFLQLA 534 (541)
T ss_pred HHHHHHHHHHHCCeeEecChhHHHHHHHHHHHHHhcCccCCHHHHHHHhccCCcEEcC--CcchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988888888899999 99999 99999999999999
Q ss_pred HHHHHH
Q 007010 607 EQQVSQ 612 (621)
Q Consensus 607 ~~~~~~ 612 (621)
++++.|
T Consensus 535 ~~~~~~ 540 (541)
T TIGR01315 535 RTQQEY 540 (541)
T ss_pred HHHHhh
Confidence 999887
No 2
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=2.2e-90 Score=769.84 Aligned_cols=497 Identities=21% Similarity=0.346 Sum_probs=439.7
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (621)
|+||||+|||++|++++|.+|+++++.+.+++... .+|+.|||+++||+++++++++++++.+.+ .+|.+||||+| +
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~~Igis~~~~ 79 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEILFVSFSTQMH 79 (505)
T ss_pred CEEEEeccccceEEEEEcCCCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceEEEEEecccc
Confidence 58999999999999999999999999999888654 789999999999999999999999876544 67999999998 9
Q ss_pred ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhc
Q 007010 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (621)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 211 (621)
++|+||++|+|| +|+|+|+|.|+.++++++.+.. ++++++||+++++.++++||+|+++|+|++|+|++
T Consensus 80 ~~v~~D~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~ 150 (505)
T TIGR01314 80 SLIAFDENWQPL---------TRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA 150 (505)
T ss_pred eeEEECCCcCCc---------ccceeccccchHHHHHHHHhhcCHHHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc
Confidence 999999999999 8999999999999999998764 57899999999999999999999999999999999
Q ss_pred ceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (621)
Q Consensus 212 ~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~ 291 (621)
+|++++|||.|+|||+.. ++.| .+|.|++||+++++|++++++.+||++.. || +++++
T Consensus 151 ~~l~~~dyl~~~LTG~~~-~d~s--------------~As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~l~~~ 208 (505)
T TIGR01314 151 KYLEIKGYIFQRLFGTYK-IDYS--------------TASATGMFNLFELDWDKEALELTGIKESQ---LP----KLVPT 208 (505)
T ss_pred EEECHHHHHHHHHcCCce-eEhh--------------hhhhhcceeCCCCCCCHHHHHhcCCCHHH---CC----CCcCc
Confidence 999999999999999864 2333 25678899999999999999999999753 47 78899
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccc
Q 007010 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF 371 (621)
Q Consensus 292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~ 371 (621)
++++|+ |++++|+.+||++||||++|++|++|+++|+ |..+| +++++++|||+++..+++++..
T Consensus 209 g~~iG~-l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~~~~~~ 272 (505)
T TIGR01314 209 TEIEEN-LPHEYAKKMGIQSSTPFVIGASDGVLSNLGV-NAIKK--------------GEAAVTIGTSGAIRTVIDKPKT 272 (505)
T ss_pred ccccCC-cCHHHHHHhCCCCCCeEEEeccHHHHHHhcC-CCCCC--------------CcEEEEechhheeeeccCcCcc
Confidence 999997 9999999999999999999999999999999 66655 5899999999998888887665
Q ss_pred cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCC
Q 007010 372 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED 451 (621)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g 451 (621)
++... .+++...++.|+.+++++++|.+++||++.+... ....++..+.+.|+.|++++++. |++++|
T Consensus 273 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~--~~~~~~~~~~~~y~~l~~~a~~~---------~~g~~g 340 (505)
T TIGR01314 273 DEKGR-IFCYALTKEHWVIGGPVNNGGDVLRWARDEIFDS--EIETATRLGIDPYDVLTEIAARV---------SPGADG 340 (505)
T ss_pred CCCCc-eEEEEecCCcEEEEeeecchHhHHHHHHHHhhhh--hhhhhhhcCCCHHHHHHHHHhhC---------CCCCCc
Confidence 54322 2222233467999999999999999999987532 11122233557799998887653 368889
Q ss_pred eEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHH
Q 007010 452 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLF 530 (621)
Q Consensus 452 l~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w 530 (621)
++|+|||.|+|+|+||+++||+|+|++.+|+++|+ +||++||+||.++++++.+++ .+.++++|+++||+++|++|
T Consensus 341 l~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w 417 (505)
T TIGR01314 341 LLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHM---IRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVW 417 (505)
T ss_pred eEEecccccCCCCCCCCCccEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHH
Confidence 99999999999999999999999999999999985 569999999999999999977 67789999999999999999
Q ss_pred HHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHHH
Q 007010 531 LQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQV 610 (621)
Q Consensus 531 ~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~ 610 (621)
+||+|||+|+||+++...|++++|||++|++++|.++|++++ ..+.+..++|+| ++++++.|+++|++|+++|++++
T Consensus 418 ~Qi~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~~Y~~~y~~y~~~~~~~~ 494 (505)
T TIGR01314 418 RQMMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-STMVGTTETHTP--IEKNFEIYREISPIFINLSRSLL 494 (505)
T ss_pred HHHHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HHhcCCCceECc--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999886 678788899999 99999999999999999999999
Q ss_pred HHHHHHHH
Q 007010 611 SQRSIMAQ 618 (621)
Q Consensus 611 ~~~~~~~~ 618 (621)
+...-+.+
T Consensus 495 ~~~~~~~~ 502 (505)
T TIGR01314 495 AEYEQIAD 502 (505)
T ss_pred HHHHHHHH
Confidence 87766655
No 3
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=2.8e-90 Score=765.19 Aligned_cols=479 Identities=24% Similarity=0.342 Sum_probs=421.7
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (621)
++||||+|||++|+++||.+|++++..+.+++... .+|+.||||++||+++++++++++++. ..++|.+||+|+| +
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~aI~is~q~~ 78 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVKALGIAGQMH 78 (484)
T ss_pred CEEEEEecccceEEEEEcCCCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--CccceeEEEEecCCC
Confidence 58999999999999999999999999999998654 789999999999999999999999875 3568999999998 9
Q ss_pred ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcce
Q 007010 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213 (621)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~ 213 (621)
++++||++|+|+ +|+|+|+|+|+.++++++.+....++++||.++++.++++||+|+++|+||+|+|+++|
T Consensus 79 ~~v~~D~~g~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~ 149 (484)
T PRK15027 79 GATLLDAQQRVL---------RPAILWNDGRCAQECALLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKV 149 (484)
T ss_pred ceEEECCCcCCc---------cccccccCccHHHHHHHHHHhcchhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhhhh
Confidence 999999999999 89999999999999999987655677899999999999999999999999999999999
Q ss_pred ecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007010 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293 (621)
Q Consensus 214 l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g~ 293 (621)
++++|||.|+|||+... +.++ ++.|++||+++++|++++++.+||+... || +++++++
T Consensus 150 ~~~~dyl~~~LTG~~~~-d~s~--------------as~t~l~d~~~~~w~~~ll~~~gi~~~~---lP----~v~~~~~ 207 (484)
T PRK15027 150 LLPKDYLRLRMTGEFAS-DMSD--------------AAGTMWLDVAKRDWSDVMLQACHLSRDQ---MP----ALYEGSE 207 (484)
T ss_pred cChHHHHHhhhcCCccc-cHHH--------------hhcccccccccCCCcHHHHHHhCCCHHH---CC----CCCCCcc
Confidence 99999999999998742 3332 4577899999999999999999999753 46 6889999
Q ss_pred ccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccC
Q 007010 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 373 (621)
Q Consensus 294 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~ 373 (621)
++|+ |++++|+++||+ +|||++|++|++|+++|+ |..+| +++++++|||+++..+++++..++
T Consensus 208 ~~G~-l~~~~a~~~GL~-~~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~~~~~~ 270 (484)
T PRK15027 208 ITGA-LLPEVAKAWGMA-TVPVVAGGGDNAAGAVGV-GMVDA--------------NQAMLSLGTSGVYFAVSEGFLSKP 270 (484)
T ss_pred cccc-ccHHHHHHhCCC-CCeEEecccHHHHHHhcc-CcccC--------------CcEEEEecCceEEEEecCCcccCc
Confidence 9997 999999999997 699999999999999999 67665 589999999999888887765554
Q ss_pred CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeE
Q 007010 374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453 (621)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 453 (621)
.......++..|+.|++++.+.++|.+++|+++.+.. +.|+++.+.+++ +|++++|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------------~~~~~~~~~a~~---------~~~g~~gl~ 328 (484)
T PRK15027 271 ESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------------SNVPALIAAAQQ---------ADESAEPVW 328 (484)
T ss_pred hhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------------ccHHHHHHHHhh---------CCCCCCceE
Confidence 3211123456688899999999999999999987531 224555554433 246889999
Q ss_pred EccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHH
Q 007010 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQ 533 (621)
Q Consensus 454 flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi 533 (621)
|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|++++.+++.|.++++|+++||++||++|+||
T Consensus 329 ~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi 405 (484)
T PRK15027 329 FLPYLSGERTPHNNPQAKGVFFGLTHQHGPNEL---ARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQM 405 (484)
T ss_pred EecccccCCCcCCCCCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHH
Confidence 999999999999999999999999999999985 56999999999999999998878889999999999999999999
Q ss_pred HHHhhCCceeecc-CCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007010 534 HADIIGCPIILPR-ENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQVSQ 612 (621)
Q Consensus 534 ~Advlg~pV~~~~-~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~~~~ 612 (621)
+||++|+||++.. ..+++++|||++|++++|.++|++++. .+.+..++|+| |+++++.|+++|++|+++|++++++
T Consensus 406 ~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~-~~~~~~~~~~P--~~~~~~~Y~~~~~~y~~~y~~~~~~ 482 (484)
T PRK15027 406 LADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELL-PQLPLEQSHLP--DAQRYAAYQPRRETFRRLYQQLLPL 482 (484)
T ss_pred HHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHH-hhcCCCceECC--CHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999997765 445889999999999999999999865 55577899999 9999999999999999999998754
No 4
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=8.7e-88 Score=756.14 Aligned_cols=507 Identities=29% Similarity=0.453 Sum_probs=431.2
Q ss_pred CCeEEEEecCccceeeEEEcC-CCCEEEEEEeeeccc-------cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 007010 54 RSVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIW-------KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVK 125 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~-~g~vv~~~~~~~~~~-------~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~ 125 (621)
++|+||||+|||++|+++||. +|+++.+++.+++.+ +.+|++||||++||+++++++++++++.+.++.+|.
T Consensus 2 ~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~I~ 81 (548)
T PRK04123 2 MAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAGVDPAAVV 81 (548)
T ss_pred CcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcCCChhhEE
Confidence 369999999999999999995 999999999998743 478999999999999999999999998877778899
Q ss_pred EEEEcCC-CceEEecCCCCceeecCC--CCCCcceeEEcCcchHHHHHHHHccC----hhHHhhh-CCCCCCCChHHHHH
Q 007010 126 GVGFAAT-CSLVAVDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYC-GGAVSPEMQPPKLL 197 (621)
Q Consensus 126 aIgis~~-~~~v~vD~~G~pl~~~~~--~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~t-G~~~~~~~~~~kl~ 197 (621)
+||||+| +++|+||++|+||.+..+ +++..|+|+|+|.|+.++++++++.. +++++.+ |+.+++.++++||+
T Consensus 82 aIgis~~~~~~v~~D~~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~kl~ 161 (548)
T PRK04123 82 GIGVDFTGSTPAPVDADGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHERGEADLSRYIGGIYSSEWFWAKIL 161 (548)
T ss_pred EEEEecccceeEEECCCCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccchhhHHHHhcCCccCcchHHHHHH
Confidence 9999998 999999999999942221 22334999999999999999998753 3577554 99999999999999
Q ss_pred HHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCC-CCCCCHHHHHHcC----
Q 007010 198 WVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDME-ACGWDDEFWEEIG---- 272 (621)
Q Consensus 198 Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~-~~~Ws~~ll~~~g---- 272 (621)
|+++|+||+|+|+++|++++|||.|+|||+..++..+. ..+.++.+++||++ ++.||+++|+.+|
T Consensus 162 Wl~~~~P~~~~~~~~~l~~~dyl~~~LTG~~~~~~~~~----------~~~~as~~~~~d~~~~~~~s~ell~~~g~~l~ 231 (548)
T PRK04123 162 HVLREDPAVYEAAASWVEACDWVVALLTGTTDPQDIVR----------SRCAAGHKALWHESWGGLPSADFFDALDPLLA 231 (548)
T ss_pred HHHhhCHHHHHHHhHhccHHHHHHHHHhCCCCcccccc----------chhhcccccccccccCCCCCHHHHHHhccchh
Confidence 99999999999999999999999999999764222211 11124567899999 5666999999996
Q ss_pred --CCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccc
Q 007010 273 --LGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICH 350 (621)
Q Consensus 273 --i~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~ 350 (621)
|+..+ || +++++++++|+ |++++|+.+||++|+||++|+||++|+++|+ |. ++ +
T Consensus 232 ~~i~~~l---lP----~l~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~-g~-~~--------------g 287 (548)
T PRK04123 232 RGLRDKL---FT----ETWTAGEPAGT-LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGA-GA-EP--------------G 287 (548)
T ss_pred hhhHhhc---CC----ccccCCCcccc-cCHHHHHHhCCCCCCeEEecchhhhhhhccc-Cc-CC--------------C
Confidence 77543 35 78899999997 9999999999999999999999999999999 66 55 4
Q ss_pred eEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (621)
Q Consensus 351 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (621)
++++++||++++..+++++...+..+..+..+..++.|.++++++++|.+++||++.+...+ ....+++.+.+.|++|+
T Consensus 288 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~-~~~~~~~~~~~~~~~l~ 366 (548)
T PRK04123 288 TLVKVMGTSTCDILLADKQRAVPGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPE-YKDEAEARGKQLLELLT 366 (548)
T ss_pred cEEEEecCceEEEEecCCccccCceeecccCcccCCeeeecccccchHHHHHHHHHhcchHh-HHHHHHhcCCcHHHHHH
Confidence 78999999999888877654433332222223457889999999999999999999874221 11112223456788888
Q ss_pred HHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007010 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510 (621)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~ 510 (621)
+++++. |++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++||++|.++++++.|++
T Consensus 367 ~~a~~~---------~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~~~~~e~l~~ 434 (548)
T PRK04123 367 EAAAKQ---------PPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDI---YRALIEATAFGTRAIMECFED 434 (548)
T ss_pred HHHHhc---------CCCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 887653 36899999999999999999999999999999999999985 569999999999999999998
Q ss_pred CCCCcCEEEEecCC-CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhh-cCCcEEcCCCC
Q 007010 511 HGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSKD 588 (621)
Q Consensus 511 ~g~~~~~I~~~GGg-a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~-~~~~~~~P~~~ 588 (621)
.+.++++|+++||+ ++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+| +
T Consensus 435 ~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P--~ 512 (548)
T PRK04123 435 QGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMASPVEKTYQP--D 512 (548)
T ss_pred cCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhhccCceEEec--C
Confidence 77888999999999 99999999999999999999999999999999999999999999999877775 45678999 9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 007010 589 PKVKKYHDAKYLIFRELFEQQ 609 (621)
Q Consensus 589 ~~~~~~y~~~y~~y~~l~~~~ 609 (621)
++.++.|+++|++|+++|+.+
T Consensus 513 ~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 513 PENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988
No 5
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=4.2e-88 Score=750.33 Aligned_cols=479 Identities=20% Similarity=0.327 Sum_probs=414.7
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
++|+||||+|||++|+++||.+|+++++.+.+++... .+|++||||++||+++++++++++++.+.++++|.+||+|+|
T Consensus 4 ~~~~lgiD~GTts~Ka~l~d~~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~~Igis~~ 83 (498)
T PRK00047 4 KKYILALDQGTTSSRAIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPDQIAAIGITNQ 83 (498)
T ss_pred cCEEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEecC
Confidence 3699999999999999999999999999999998654 889999999999999999999999888777788999999998
Q ss_pred -CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (621)
Q Consensus 133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 208 (621)
+++|+||++ |+|+ +|+|+|+|.|+.++++++.+.. ++++++||+++++.++++||+|+++|+||+|+
T Consensus 84 ~~~~v~~D~~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~ 154 (498)
T PRK00047 84 RETTVVWDKETGRPI---------YNAIVWQDRRTADICEELKRDGYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARE 154 (498)
T ss_pred cceEEEEECCCCcCC---------cccceecccchHHHHHHHHhccchhhHHHhhCCCCCccchHHHHHHHHHcCHhHHH
Confidence 999999966 9999 8999999999999999998653 45899999999999999999999999999988
Q ss_pred hhc----ceecchhHHhhhhcccc-ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010 209 MVF----RWMDLSDWLSYRATGDD-TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (621)
Q Consensus 209 ~~~----~~l~~~dyl~~~LTG~~-~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~ 283 (621)
++. +|++++|||.|+|||.. ..++.|+ +|+|++||+++++||+++|+.+|||+.+ ||
T Consensus 155 ~~~~~~~~~~~~~dyl~~~LTG~~~~~~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP- 216 (498)
T PRK00047 155 RAEKGELLFGTIDTWLVWKLTGGKVHVTDYTN--------------ASRTMLFNIHTLDWDDELLELLDIPRSM---LP- 216 (498)
T ss_pred HHhcCCeEEeChHHhHhhhhcCCCeeEeechH--------------HhhhhccccccCccCHHHHHhcCCCHHH---CC-
Confidence 775 37889999999999752 2344443 5577899999999999999999999754 46
Q ss_pred cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (621)
Q Consensus 284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~ 363 (621)
+++++++++|. |+++ +++.+||||++|++|++|+++|+ |..+| +++++++|||+++.
T Consensus 217 ---~i~~~g~~~G~-v~~~----~~l~~g~pV~~g~~D~~aa~~G~-G~~~~--------------g~~~~~~GTs~~~~ 273 (498)
T PRK00047 217 ---EVRPSSEVYGK-TNPY----GFFGGEVPIAGIAGDQQAALFGQ-LCFEP--------------GMAKNTYGTGCFML 273 (498)
T ss_pred ---CccCCcccccc-cccc----ccCCCCceEEEEccHHHHHHHhC-cCCCC--------------CceEEeeccceEEE
Confidence 68899999997 9987 67779999999999999999998 66655 58999999999866
Q ss_pred cee-CcccccCCc-cccccccccCC--eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhh
Q 007010 364 AVS-RNKLFIPGV-WGPFWSAMVPK--FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHE 439 (621)
Q Consensus 364 ~~~-~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 439 (621)
+.+ +++..++.. ...++ +..++ .|+++++++++|.+++|++++++.. ..++++++++++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~g~~l~W~~~~~~~~------------~~~~~~~~~a~~~--- 337 (498)
T PRK00047 274 MNTGEKAVKSENGLLTTIA-WGIDGKVVYALEGSIFVAGSAIQWLRDGLKII------------SDASDSEALARKV--- 337 (498)
T ss_pred EecCCccccCCCCceeEEE-EEcCCCcEEEEEeeHhhHHHHHHHHHHHhcCC------------CCHHHHHHHHhcC---
Confidence 666 455554432 21122 22344 6999999999999999999987421 1134455544432
Q ss_pred cCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEE
Q 007010 440 RNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTL 518 (621)
Q Consensus 440 ~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I 518 (621)
++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|++++.|++ .|.++++|
T Consensus 338 -------~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~g~~~~~i 407 (498)
T PRK00047 338 -------EDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHI---IRATLESIAYQTRDVLDAMQADSGIRLKEL 407 (498)
T ss_pred -------CCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 3678999999999999999999999999999999999985 569999999999999999986 47889999
Q ss_pred EEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHH
Q 007010 519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAK 598 (621)
Q Consensus 519 ~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~ 598 (621)
+++||+++|++|+||+|||||+||+++...|++++|||++|++++|.|++++++ .++.+..++|+| ++++++ |+++
T Consensus 408 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~~~~~~~P--~~~~~~-y~~~ 483 (498)
T PRK00047 408 RVDGGAVANNFLMQFQADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQWKIDRRFEP--QMDEEE-REKL 483 (498)
T ss_pred EEecCcccCHHHHHHHHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-HhhcCCCeEECC--CCCHHH-HHHH
Confidence 999999999999999999999999999999999999999999999999999987 677778899999 889887 9999
Q ss_pred HHHHHHHHHHHHHH
Q 007010 599 YLIFRELFEQQVSQ 612 (621)
Q Consensus 599 y~~y~~l~~~~~~~ 612 (621)
|++|+++|++++.|
T Consensus 484 ~~~~~~~~~~~~~~ 497 (498)
T PRK00047 484 YAGWKKAVKRTLAW 497 (498)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988765
No 6
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.8e-87 Score=750.82 Aligned_cols=504 Identities=29% Similarity=0.438 Sum_probs=425.5
Q ss_pred eEEEEecCccceeeEEEc-CCCCEEEEEEeeecc------ccC------CCccccCHHHHHHHHHHHHHHHHHHcCCCCC
Q 007010 56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQI------WKE------GDCIEQSSTDIWHAICAAVDSACSLANVDGE 122 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~------~~~------~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~ 122 (621)
|+||||+|||++|++||| .+|++++..+.++++ ++. +|++||||++||+++++++++++++.+.+++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~~~~~ 81 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELGVDPA 81 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 799999999999999999 899999999999874 233 7999999999999999999999998877677
Q ss_pred CEEEEEEcCC-CceEEecCCCCceeecCC--CCCCcceeEEcCcchHHHHHHHHccC----hhHHhhhCCCCCCCChHHH
Q 007010 123 EVKGVGFAAT-CSLVAVDADGSPVSVSWN--GDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPK 195 (621)
Q Consensus 123 ~I~aIgis~~-~~~v~vD~~G~pl~~~~~--~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~k 195 (621)
+|++||+|+| +++|+||++|+||.++.+ ..+..++|+|+|+|+.+++++|++.. +.++++||+++++.++++|
T Consensus 82 ~I~aI~~s~q~~s~v~~D~~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~k 161 (536)
T TIGR01234 82 DVVGIGVDFTACTPAPIDSDGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWAK 161 (536)
T ss_pred HEEEEEEecCcceeEEECCCCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhccchhHHHhhCCccCchhHHHH
Confidence 8999999998 999999999999931000 00111299999999999999998753 4688999999999999999
Q ss_pred HHHHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCC--
Q 007010 196 LLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGL-- 273 (621)
Q Consensus 196 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi-- 273 (621)
|+|+++|+||+|+++.+|++++|||.|+|||+...+ .+. ++.+++++...+.|++++++.+|+
T Consensus 162 l~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~d-~s~--------------a~~~~l~~~~w~~~~~~~l~~~g~~~ 226 (536)
T TIGR01234 162 ILQITEEDPAIYQAADRWIELADWIVAQLSGDIRRG-RCT--------------AGYKALWHESWGYPSASFFDELNPIL 226 (536)
T ss_pred HHHHHhhChHHHHHHhhhcCHHHHHHHHHhCCcccc-chh--------------cccceeccccccCCCHHHHHHhcchh
Confidence 999999999999999999999999999999987532 332 234455555555559999999996
Q ss_pred ----CccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhcc
Q 007010 274 ----GDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAIC 349 (621)
Q Consensus 274 ----~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~ 349 (621)
|+.+ +| +++++++++|. |++++|+++||++|+||++|++|++|+++|+ |..++
T Consensus 227 ~~~lp~~~---~p----~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~-------------- 283 (536)
T TIGR01234 227 NRHLPDKL---FT----DIWTAGEPAGT-LTPEWAQRTGLPEGVVVAVGNFDAHVGAVAA-GIAQP-------------- 283 (536)
T ss_pred hhhhhhhc---CC----ceecCCCcccc-cCHHHHHHhCCCCCCeEEecchhHhhhhhcc-ccccC--------------
Confidence 4432 24 78899999997 9999999999999999999999999999999 66655
Q ss_pred ceEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHH
Q 007010 350 HRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELL 429 (621)
Q Consensus 350 ~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l 429 (621)
|++++++|||.++..+.+++...+..+..+..+..++.|.++++++++|.+++||++.+...+ .....+..+.+.|+.|
T Consensus 284 g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~l 362 (536)
T TIGR01234 284 GALVKIMGTSTCHVLIGDKQRAVPGMCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPE-LKTEANASQKQLHEAL 362 (536)
T ss_pred CcEEEEEccceEEEEecCccccCCceeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchH-HHHHHHhcCCCHHHHH
Confidence 589999999999877776544333221111112446789999999999999999999874321 1111222234568888
Q ss_pred HHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007010 430 NGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCN 509 (621)
Q Consensus 430 ~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~ 509 (621)
++.+++. |++++|++|+|||.|||+|+||+++||+|+|++.+|++.|+ +||++|||||.+|++++.|+
T Consensus 363 ~~~a~~~---------p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~---~RAvlEgia~~~~~~l~~l~ 430 (536)
T TIGR01234 363 SEAAAKQ---------PSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLL---YRALIEATAFGTRMIMETFT 430 (536)
T ss_pred HHHHHhC---------CCCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 8777653 36899999999999999999999999999999999999985 66999999999999999998
Q ss_pred hCCCCcCEEEEecCC-CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhh-cCCcEEcCCC
Q 007010 510 AHGHKIDTLLACGGL-AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMN-AAGQVIHPSK 587 (621)
Q Consensus 510 ~~g~~~~~I~~~GGg-a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~-~~~~~~~P~~ 587 (621)
+.|.++++|+++||+ ++|++|+||+||++|+||+++...|++++|||++|++++|.|++++++.+.+. ...++|+|
T Consensus 431 ~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~~~~~~~~P-- 508 (536)
T TIGR01234 431 DSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGSAVEKTLTP-- 508 (536)
T ss_pred hcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhccCCceECC--
Confidence 878889999999999 99999999999999999999999999999999999999999999999877776 56889999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHH
Q 007010 588 DPKVKKYHDAKYLIFRELFEQQVSQ 612 (621)
Q Consensus 588 ~~~~~~~y~~~y~~y~~l~~~~~~~ 612 (621)
++++++.|+++|++|+++|+++-.|
T Consensus 509 ~~~~~~~y~~~y~~y~~l~~~~~~~ 533 (536)
T TIGR01234 509 CSENAQRYEQLYARYQELAMSFGQY 533 (536)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999988665
No 7
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=3.7e-87 Score=746.14 Aligned_cols=493 Identities=22% Similarity=0.306 Sum_probs=428.2
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccc--c-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIW--K-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~--~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis 130 (621)
|+|+||||+|||++|+++||.+|++++..+.+++.. . .+|++||||++||+++++++++++++.+..+++|.+||+|
T Consensus 2 m~~~lgID~GTts~Ka~l~d~~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~~~I~aI~~s 81 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPASDIAAVSAT 81 (520)
T ss_pred CcEEEEEecCCCceEEEEECCCCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCccceEEEEEE
Confidence 369999999999999999999999999999888643 2 6899999999999999999999998877777889999999
Q ss_pred CC-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC----hhHHhhhCCCCCCCChHHHHHHHHHhcch
Q 007010 131 AT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQE 205 (621)
Q Consensus 131 ~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe 205 (621)
+| +++|+||++|+|+ .+ +.|.|.|+.++++++++.. ++++++||.++ +.++++||+|+++|+||
T Consensus 82 ~~~~~~v~~D~~g~pl---------~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe 150 (520)
T PRK10939 82 SMREGIVLYDRNGTEI---------WA-CANVDARASREVSELKELHNNFEEEVYRCSGQTL-ALGALPRLLWLAHHRPD 150 (520)
T ss_pred CCcccEEEECCCCCEe---------eC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCcC-CcchHHHHHHHHHcCcH
Confidence 98 9999999999999 44 5799999999999998753 46889999875 67899999999999999
Q ss_pred hHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccC
Q 007010 206 SWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIG 285 (621)
Q Consensus 206 ~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~ 285 (621)
+|+|+.+|++++|||.|+|||+.. ++.|+ ++.|++||+++++|++++++.+||++.+ ||
T Consensus 151 ~~~~~~~~~~~~dyl~~~LTG~~~-~d~s~--------------As~tgl~d~~~~~W~~~ll~~~gi~~~~---lP--- 209 (520)
T PRK10939 151 IYRQAHTITMISDWIAYMLSGELA-VDPSN--------------AGTTGLLDLVTRDWDPALLEMAGLRADI---LP--- 209 (520)
T ss_pred HHHHhheEechhHhhhheeeCcee-eEhhh--------------hhceeeeecCCCCCCHHHHHHcCCCHHH---CC---
Confidence 999999999999999999999874 33332 5678899999999999999999999754 46
Q ss_pred cccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecce
Q 007010 286 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAV 365 (621)
Q Consensus 286 ~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~ 365 (621)
+++++++++|. |++++|+.+||++|+||++|++|++|+++|+ |+.+| |++++++|||.++...
T Consensus 210 -~i~~~g~~~G~-v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~ 272 (520)
T PRK10939 210 -PVKETGTVLGH-VTAKAAAETGLRAGTPVVMGGGDVQLGCLGL-GVVRP--------------GQTAVLGGTFWQQVVN 272 (520)
T ss_pred -CCccCCceeee-ecHHHHHhhCCCCCCcEEEeCchHHHHHhhc-CcccC--------------CcEEEeecCcceeEEe
Confidence 78899999997 9999999999999999999999999999998 67655 4789999999987777
Q ss_pred eCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCc
Q 007010 366 SRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 445 (621)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 445 (621)
++++..++........+..++.|.+++.++++|.+++||+++|+..+.. .++..+.+.|++|++++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~--------- 341 (520)
T PRK10939 273 LPAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTMRWFRDAFCAEEKL--LAERLGIDAYSLLEEMASRV--------- 341 (520)
T ss_pred ccccccCccccceeceeeeCCcceEeeeeccceeeeehHHhhhchHHHH--HHHhcCCCHHHHHHHHHhhC---------
Confidence 7766555532111223566888999999999999999999987543221 12234567899998887653
Q ss_pred cCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEe
Q 007010 446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDS---SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLAC 521 (621)
Q Consensus 446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~---~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~ 521 (621)
|+|++|+ +|||.|+|.|.+++++||+|+|++.+| ++.| ++||++|||||.+|++++.+++. +.++++|+++
T Consensus 342 ~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~---~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~ 416 (520)
T PRK10939 342 PVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKAT---LFRALEENAAIVSACNLQQIAAFSGVFPSSLVFA 416 (520)
T ss_pred CCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 3678787 699999987655568999999999987 6666 56799999999999999999874 7889999999
Q ss_pred cCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHH
Q 007010 522 GGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLI 601 (621)
Q Consensus 522 GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~ 601 (621)
||+++|++|+||+|||+|+||+++...|++++|||++|++++|.|+|++++.+.+.+..++|+| ++++++.|+++|++
T Consensus 417 GGga~s~~w~Qi~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~y~~ 494 (520)
T PRK10939 417 GGGSKGKLWSQILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLAETGERLVRWERTFEP--NPENHELYQEAKEK 494 (520)
T ss_pred CCcccCHHHHHHHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHHHHHHHHcccCceECc--CHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988888788899999 99999999999999
Q ss_pred HHHHHHHHHHHH
Q 007010 602 FRELFEQQVSQR 613 (621)
Q Consensus 602 y~~l~~~~~~~~ 613 (621)
|+++|+.+++++
T Consensus 495 y~~l~~~~~~~~ 506 (520)
T PRK10939 495 WQAVYADQLGLV 506 (520)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 8
>PLN02295 glycerol kinase
Probab=100.00 E-value=2.6e-87 Score=745.57 Aligned_cols=480 Identities=19% Similarity=0.316 Sum_probs=411.3
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC----EEEEEEc
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEE----VKGVGFA 130 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~----I~aIgis 130 (621)
|+||||+|||++|+++||.+|+++++.+.+++... .+||+||||++||+++++++++++++.+.++++ |.+||+|
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~~~i~aIg~s 80 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGIT 80 (512)
T ss_pred CEEEEecCCCceEEEEECCCCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccccceEEEEEe
Confidence 58999999999999999999999999999998654 899999999999999999999999988776666 7999999
Q ss_pred CC-CceEEe-cCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC----hhHHhhhCCCCCCCChHHHHHHHHHhcc
Q 007010 131 AT-CSLVAV-DADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN----SPVLQYCGGAVSPEMQPPKLLWVKENLQ 204 (621)
Q Consensus 131 ~~-~~~v~v-D~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~----~~~~~~tG~~~~~~~~~~kl~Wl~~~~p 204 (621)
+| +++|+| |++|+|| +|+|+|+|.|+.++++++++.. +.++++||+++++.++++||+|+++|+|
T Consensus 81 ~q~~~~v~~dd~~G~pl---------~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P 151 (512)
T PLN02295 81 NQRETTVAWSKSTGRPL---------YNAIVWMDSRTSSICRRLEKELSGGRKHFVETCGLPISTYFSATKLLWLLENVD 151 (512)
T ss_pred cCcceEEEEECCCCCCc---------ccceeccccchHHHHHHHHhhccchhHHHHHhhCCcCCcccHHHHHHHHHhcCH
Confidence 98 999999 5889999 8999999999999999998753 2456999999999999999999999999
Q ss_pred hhHHhh----cceecchhHHhhhhcccc----ccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCcc
Q 007010 205 ESWSMV----FRWMDLSDWLSYRATGDD----TRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDL 276 (621)
Q Consensus 205 e~~~~~----~~~l~~~dyl~~~LTG~~----~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~ 276 (621)
|+|+++ .+|++++|||.|+|||+. ..++.|+ +++|++||+++++||+++++.+|||+.
T Consensus 152 ~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~--------------As~t~l~D~~~~~W~~ell~~~gi~~~ 217 (512)
T PLN02295 152 AVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTN--------------ASRTMLMNLKTLDWDKPTLEALGIPAE 217 (512)
T ss_pred HHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHH--------------hHHhhccCcccCcCCHHHHHHcCCCHH
Confidence 999655 489999999999999942 1244443 567889999999999999999999975
Q ss_pred ccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEe
Q 007010 277 IDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVC 356 (621)
Q Consensus 277 ~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 356 (621)
+ || +++++++++|+ |++++++ +||||++|++|++|+++|+ |. .+ +++.+++
T Consensus 218 ~---lP----~l~~~~~~~G~-v~~~~a~-----~g~pV~~g~~D~~aa~~G~-G~-~~--------------g~~~~~~ 268 (512)
T PLN02295 218 I---LP----KIVSNSEVIGT-IAKGWPL-----AGVPIAGCLGDQHAAMLGQ-RC-RP--------------GEAKSTY 268 (512)
T ss_pred H---CC----CcccCccceec-ccccccc-----CCCcEEEEechHHHHHhhC-cC-CC--------------CCeEEEE
Confidence 4 47 68899999997 9987765 4999999999999999999 66 55 4789999
Q ss_pred cccceecceeCcc-cccC-Ccccccccc---ccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHH
Q 007010 357 GTSTCHMAVSRNK-LFIP-GVWGPFWSA---MVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNG 431 (621)
Q Consensus 357 GTs~~~~~~~~~~-~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 431 (621)
||++.+.+.++.+ ..++ +....+.+. ..|+.|+++++++++|.+++||++.+... ..++++++
T Consensus 269 GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~------------~~~~~~~~ 336 (512)
T PLN02295 269 GTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGII------------KSASEIEA 336 (512)
T ss_pred cccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCC------------CCHHHHHH
Confidence 9998866555542 3332 222112111 12788999999999999999999977421 12445555
Q ss_pred HHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 007010 432 TLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH 511 (621)
Q Consensus 432 ~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~ 511 (621)
++++. ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|++++.|++.
T Consensus 337 ~a~~~----------~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~RAvlEgia~~~r~~l~~l~~~ 403 (512)
T PLN02295 337 LAATV----------DDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHI---ARAVLESMCFQVKDVLDAMRKD 403 (512)
T ss_pred HHHhC----------CCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHhh
Confidence 55432 2678999999999999999999999999999999999996 5599999999999999999864
Q ss_pred ------CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcC
Q 007010 512 ------GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 585 (621)
Q Consensus 512 ------g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P 585 (621)
+.++++|+++||+++|++||||+|||+|+||+++...|++++|||++|++++|.|++++++...+++..++|+|
T Consensus 404 ~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~~~~~~~P 483 (512)
T PLN02295 404 AGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWKNTTTFRP 483 (512)
T ss_pred hcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccCCCeEECC
Confidence 23688999999999999999999999999999999999999999999999999999988765578888899999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007010 586 SKDPKVKKYHDAKYLIFRELFEQQVSQRSI 615 (621)
Q Consensus 586 ~~~~~~~~~y~~~y~~y~~l~~~~~~~~~~ 615 (621)
++++++ |+++|++|+++|++...++++
T Consensus 484 --~~~~~~-y~~~y~~~~~~~~~~~~~~~~ 510 (512)
T PLN02295 484 --KLDEEE-RAKRYASWCKAVERSFDLADL 510 (512)
T ss_pred --CCCHHH-HHHHHHHHHHHHHHHhcchhc
Confidence 999999 999999999999988877654
No 9
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=8.7e-87 Score=740.44 Aligned_cols=482 Identities=22% Similarity=0.371 Sum_probs=414.4
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCC--CEEEEEEc
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGE--EVKGVGFA 130 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~--~I~aIgis 130 (621)
|+|+||||+|||++|++|||.+|++++..+.+++... .+|++||||++||+++++++++++++.+..+. +|++||+|
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~I~aIgis 80 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFKIKAIGIT 80 (504)
T ss_pred CcEEEEEecCCCceEEEEECCCCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCceEEEEee
Confidence 3599999999999999999999999999999998655 78999999999999999999999988765555 89999999
Q ss_pred CC-CceEEecC-CCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC---hhHHhhhCCCCCCCChHHHHHHHHHhcch
Q 007010 131 AT-CSLVAVDA-DGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGGAVSPEMQPPKLLWVKENLQE 205 (621)
Q Consensus 131 ~~-~~~v~vD~-~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe 205 (621)
+| +++|+||+ +|+|| +|+|+|+|.|+.++++++.+.. +.++++||+++++.++++||+|+++|+|+
T Consensus 81 ~q~~~~v~~D~~~g~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~ 151 (504)
T PTZ00294 81 NQRETVVAWDKVTGKPL---------YNAIVWLDTRTYDIVNELTKKYGGSNFFQKITGLPISTYFSAFKIRWMLENVPA 151 (504)
T ss_pred cCcceEEEEECCCCCCc---------ccceeecchhhHHHHHHHHhhcCcchHHHHhhCCcCCccchHHHHHHHHhcCHH
Confidence 98 99999987 59999 8999999999999999998764 34668999999999999999999999999
Q ss_pred hHHhhcc----eecchhHHhhhhcc--ccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccc
Q 007010 206 SWSMVFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDG 279 (621)
Q Consensus 206 ~~~~~~~----~l~~~dyl~~~LTG--~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~ 279 (621)
+|+++++ +++++|||.|+||| +.. ++.++ +++|++||+++++|++++++.+||+..+
T Consensus 152 ~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~-~d~s~--------------As~tgl~D~~~~~W~~~ll~~~gi~~~~-- 214 (504)
T PTZ00294 152 VKDAVKEGTLLFGTIDTWLIWNLTGGKSHV-TDVTN--------------ASRTFLMNIKTLKWDEELLNKFGIPKET-- 214 (504)
T ss_pred HHHhhhcCCeEEEcHHHHHHHHhcCCceEE-EEhhh--------------hHHhhccCcccCccCHHHHHHhCCCHHH--
Confidence 9996655 99999999999999 654 33332 5678899999999999999999999754
Q ss_pred cccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEeccc
Q 007010 280 HHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTS 359 (621)
Q Consensus 280 ~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs 359 (621)
|| +++++++++|. |++ +.+|+++|+||++|++|++|+++|+ |+.++ |++.+++||+
T Consensus 215 -LP----~v~~~~~~~G~-l~~---~~~~~~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs 270 (504)
T PTZ00294 215 -LP----EIKSSSENFGT-ISG---EAVPLLEGVPITGCIGDQQAALIGH-GCFEK--------------GDAKNTYGTG 270 (504)
T ss_pred -CC----CccCCccccCc-cch---hhcCCCCCCcEEEEecHHHHHHHhC-cCCCC--------------CceEEeeccc
Confidence 46 68899999997 984 4677889999999999999999999 66654 5799999999
Q ss_pred ceecceeC-cccccCC-cccccccccc---CCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHH
Q 007010 360 TCHMAVSR-NKLFIPG-VWGPFWSAMV---PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLE 434 (621)
Q Consensus 360 ~~~~~~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (621)
+++...+. ++..++. .+..+++... |+.|++++++.++|.+++|+++.+... ..|++++++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~ 338 (504)
T PTZ00294 271 CFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLI------------SHPSEIEKLAR 338 (504)
T ss_pred eEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCC------------CCHHHHHHHHH
Confidence 88655443 3444432 2222222221 448999999999999999999986411 12556666654
Q ss_pred hhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Q 007010 435 SMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGH 513 (621)
Q Consensus 435 ~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~ 513 (621)
+. ++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|++++.|++ .|.
T Consensus 339 ~~----------~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i---~rAvlEgia~~~r~~~~~l~~~~g~ 405 (504)
T PTZ00294 339 SV----------KDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHI---VRAALEAIALQTNDVIESMEKDAGI 405 (504)
T ss_pred hC----------CCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 42 3788999999999999999999999999999999999995 559999999999999999987 477
Q ss_pred CcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhc-CCcEEcCCCChhhH
Q 007010 514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA-AGQVIHPSKDPKVK 592 (621)
Q Consensus 514 ~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~-~~~~~~P~~~~~~~ 592 (621)
++++|+++||+++|++|+||+||++|+||+++...|++++|||++|++++|.|+|++++. ++.. ..++|+| +++++
T Consensus 406 ~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~-~~~~~~~~~~~P--~~~~~ 482 (504)
T PTZ00294 406 ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVK-KLIRRSNSTFSP--QMSAE 482 (504)
T ss_pred CcceEEEecccccCHHHHHHHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHH-HhccCCCcEECC--CCCHH
Confidence 889999999999999999999999999999999999999999999999999999999875 5544 6789999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007010 593 KYHDAKYLIFRELFEQQVSQRS 614 (621)
Q Consensus 593 ~~y~~~y~~y~~l~~~~~~~~~ 614 (621)
+ |+++|++|+++|+++..|-|
T Consensus 483 ~-y~~~~~~~~~~~~~~~~~~~ 503 (504)
T PTZ00294 483 E-RKAIYKEWNKAVERSLKWAK 503 (504)
T ss_pred H-HHHHHHHHHHHHHHHhcccc
Confidence 9 99999999999998877654
No 10
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=9.7e-86 Score=693.01 Aligned_cols=527 Identities=44% Similarity=0.762 Sum_probs=466.9
Q ss_pred CCeEEEEecCccceeeEEEcC-CCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 54 RSVFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~-~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
+.|+||||+||.|.|+++||. +|++++.+.+||++.. .+...||++.++|++++.+++.+++++++++.+|++|||++
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~gIGvDa 81 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVGIGVDA 81 (544)
T ss_pred ccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeEEEEcc
Confidence 579999999999999999996 5999999999999877 77889999999999999999999999999999999999999
Q ss_pred CCceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccChhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhc
Q 007010 132 TCSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNSPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (621)
Q Consensus 132 ~~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 211 (621)
+|++|++|++|+||...++..+..++|+|+|+|+.+++++++...++++.+.|..++|.+-.|||+|+++|.|++|+|+.
T Consensus 82 TcSlvv~d~~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~~~L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~ 161 (544)
T COG1069 82 TCSLVVIDRDGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVWERAA 161 (544)
T ss_pred eeeeEEECCCCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhchHHHHhhCCccChhhhHHHHHHHHhhChHHHHHhh
Confidence 99999999999999766665555589999999999999999998888999999999999999999999999999999999
Q ss_pred ceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (621)
Q Consensus 212 ~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~ 291 (621)
+|+.+.|||.|+|||....+.|+.+++|+++. -+.+.|++++++.+|++.... .-.+++.++++.
T Consensus 162 ~~fdl~D~l~~~ltG~~~Rs~Ct~~~Kw~~~~--------------~~~~~~~~~~f~~ig~~~l~~-~~~~l~~~i~~~ 226 (544)
T COG1069 162 HIFDLADWLTWKLTGSIARSRCTAGCKWNWLE--------------HEGGLWSADFFDKIGLDDLRE-LDSKLPEDIVPA 226 (544)
T ss_pred hhhhHHHHHHHHhhcchhhccccceeeeeeec--------------cccCCCCHHHHHhcCchhhhc-ccccCCcccccC
Confidence 99999999999999999889999999998752 146779999999999885443 114456689999
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccc
Q 007010 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLF 371 (621)
Q Consensus 292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~ 371 (621)
|+++|+ +++++|+++||++||.|..|..|.+++.+|+++ ..| +.+..+.|||+|++..++++.+
T Consensus 227 g~~vg~-Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~-~~~--------------~~l~~I~GTStC~m~~s~~~~~ 290 (544)
T COG1069 227 GEPVGG-LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGG-AQP--------------GSLAMIAGTSTCHMLLSEKPRF 290 (544)
T ss_pred Cccccc-cCHHHHHHhCCCCCcEEeccceecccccccccc-CCC--------------CeEEEEeccceEEEEecCCcee
Confidence 999996 999999999999999999999999999999843 333 5799999999999999999999
Q ss_pred cCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCC
Q 007010 372 IPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTED 451 (621)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~g 451 (621)
.+++|++++....||.|++||+++.+|..++||.+.+....+........+...|+.+++.++.+...... ++++.++
T Consensus 291 v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~ 368 (544)
T COG1069 291 VPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAA--IPPLASG 368 (544)
T ss_pred cCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhc--cCcccCC
Confidence 99999999888899999999999999999999999863322111111112344566666555544322111 3478999
Q ss_pred eEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHH
Q 007010 452 IHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL 531 (621)
Q Consensus 452 l~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~ 531 (621)
++|||+|+|+|+|+-||+++|+|+|++++|++++++.+|||.+|+++|..|+++|.+++.|+++++|+++||..||++||
T Consensus 369 l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llm 448 (544)
T COG1069 369 LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLM 448 (544)
T ss_pred cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCCh-hhHHHHHHHHHHHHHHHHHHH
Q 007010 532 QQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDP-KVKKYHDAKYLIFRELFEQQV 610 (621)
Q Consensus 532 Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~-~~~~~y~~~y~~y~~l~~~~~ 610 (621)
|+.||++|+||+++..+++.++|+||++++|.|.|+|+..|.++|....+.+.| ++ +.+..|+++|++|++++....
T Consensus 449 ql~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A~~aMs~~~~~~~~--~~~~~~~~y~~lyr~y~~l~~~~~ 526 (544)
T COG1069 449 QLYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAAAQAMSSAVEKTLP--PPPERAARYERLYRRYLQLHDDAE 526 (544)
T ss_pred HHHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHHHHHhhcccceecC--ChHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887766666 55 999999999999999998877
Q ss_pred HHHHH
Q 007010 611 SQRSI 615 (621)
Q Consensus 611 ~~~~~ 615 (621)
...++
T Consensus 527 ~~~~~ 531 (544)
T COG1069 527 KHYAR 531 (544)
T ss_pred hhhhh
Confidence 74443
No 11
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=7.5e-85 Score=723.43 Aligned_cols=474 Identities=23% Similarity=0.383 Sum_probs=412.2
Q ss_pred CeEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-
Q 007010 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT- 132 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~- 132 (621)
+|+||||+|||++|+++||.+|++++..+.+++... .+|+.|||+++||+.+++++++++++.+..+++|.+||+|+|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~aIgis~~~ 80 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKDGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIAAIGITNQR 80 (493)
T ss_pred CeEEEEecCCCceEEEEECCCCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhheeEEEEecCc
Confidence 489999999999999999999999999999998654 889999999999999999999999988777789999999998
Q ss_pred CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010 133 CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (621)
Q Consensus 133 ~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 209 (621)
+++|+||++ |+|| +|+|+|+|+|+.++++++++.. ++++++||.++++.++++||+|+++|+||+|++
T Consensus 81 ~~~v~~D~~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~ 151 (493)
T TIGR01311 81 ETTVVWDKATGKPL---------YNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLDPYFSATKLRWLLDNVPGVREA 151 (493)
T ss_pred ceEEEEECCCCcCc---------ccceeecccchHHHHHHHHHhcchHHHHHHhCCcCCccchHHHHHHHHhcCHHHHHH
Confidence 999999976 9999 8999999999999999998764 578999999999999999999999999999998
Q ss_pred hcc----eecchhHHhhhhcc--ccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010 210 VFR----WMDLSDWLSYRATG--DDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (621)
Q Consensus 210 ~~~----~l~~~dyl~~~LTG--~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~ 283 (621)
+++ |++++|||.|+||| +.. ++.++ +++|++||+++++|++++++.+||++.+ ||
T Consensus 152 ~~~~~~~~~~~~dyl~~~LtG~~~~~-~d~s~--------------As~t~l~d~~~~~W~~~~l~~~gi~~~~---lP- 212 (493)
T TIGR01311 152 AERGELLFGTIDTWLIWNLTGGKVHV-TDVTN--------------ASRTMLFNIHTLDWDDELLELFGIPREI---LP- 212 (493)
T ss_pred hhcCCeEEECHhHhhhhhccCCceEE-eccch--------------hhhhhcccccccccCHHHHHHcCCCHHH---CC-
Confidence 764 88999999999999 653 34443 4577899999999999999999999753 46
Q ss_pred cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (621)
Q Consensus 284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~ 363 (621)
+++++++++|. |+++ |+++||||++|++|++|+++|+ |..++ +++++++||+.++.
T Consensus 213 ---~l~~~g~~~G~-v~~~-----~l~~g~pV~~g~~D~~aa~~G~-g~~~~--------------g~~~~~~GTs~~~~ 268 (493)
T TIGR01311 213 ---EVRSSSEVYGY-TDPG-----LLGAEIPITGVLGDQQAALFGQ-ACFKP--------------GQAKNTYGTGCFLL 268 (493)
T ss_pred ---CccCCccceec-cccc-----ccCCCceEEEecccHHHHHhhC-cCCCC--------------CceEEeecccceEe
Confidence 78899999997 9886 7779999999999999999999 66655 58999999998865
Q ss_pred ceeC-cccccC-CccccccccccCC---eeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhh
Q 007010 364 AVSR-NKLFIP-GVWGPFWSAMVPK---FWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIH 438 (621)
Q Consensus 364 ~~~~-~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 438 (621)
..+. .+..++ +....++ +..++ .|+.++++.++|.+++|+++.++.. ..|+++++++++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~g~~~~W~~~~~~~~------------~~~~~~~~~a~~~-- 333 (493)
T TIGR01311 269 MNTGEKPVISKHGLLTTVA-YQLGGKKPVYALEGSVFVAGAAVQWLRDNLKLI------------KHAAESEALARSV-- 333 (493)
T ss_pred eecCCccccCCCCceEEEE-EecCCCCceEEEEeehhhhHHHHHHHHHHhCCC------------CCHHHHHHHHhcC--
Confidence 5443 333333 2222222 22233 4899999999999999999987521 1255565555431
Q ss_pred hcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCE
Q 007010 439 ERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDT 517 (621)
Q Consensus 439 ~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~ 517 (621)
++++|++|+|||.|+|+|+||+++||+|+|++.+|++.|+ +||++|||||.+|++++.|++. |.++++
T Consensus 334 --------~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~g~~~~~ 402 (493)
T TIGR01311 334 --------EDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHI---ARAALEAIAFQTRDVLEAMEKDAGVEITK 402 (493)
T ss_pred --------CCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 3788999999999999999999999999999999999985 5699999999999999999874 778899
Q ss_pred EEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHH
Q 007010 518 LLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA 597 (621)
Q Consensus 518 I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~ 597 (621)
|+++||++||++|+||+|||+|+||++++..|++++|||++|++++|.|+|++++ +++++..++|+| ++++++ |++
T Consensus 403 i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~~~~~~~P--~~~~~~-y~~ 478 (493)
T TIGR01311 403 LRVDGGMTNNNLLMQFQADILGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALWRVEKTFEP--EMDEEE-REA 478 (493)
T ss_pred EEEecccccCHHHHHHHHHhcCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhcCCCcEECC--CCCHHH-HHH
Confidence 9999999999999999999999999999999999999999999999999999986 788888899999 888887 999
Q ss_pred HHHHHHHHHHHHH
Q 007010 598 KYLIFRELFEQQV 610 (621)
Q Consensus 598 ~y~~y~~l~~~~~ 610 (621)
+|++|+++|+++.
T Consensus 479 ~~~~~~~~~~~~~ 491 (493)
T TIGR01311 479 RYAGWKEAVKRSL 491 (493)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999765
No 12
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=7.5e-84 Score=715.17 Aligned_cols=476 Identities=28% Similarity=0.441 Sum_probs=425.7
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-Cce
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSL 135 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~ 135 (621)
||||+|||++|++++|.+|+++.+.+.+++... .+|+.|||+++||+.+++++++++++.+.++.+|.+||+++| +|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gIgvs~~~~g~ 80 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGIGISGQMHGL 80 (481)
T ss_pred CceeecCcceEEEEECCCCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCcee
Confidence 699999999999999999999999999998654 899999999999999999999999988777789999999998 999
Q ss_pred EEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcce
Q 007010 136 VAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRW 213 (621)
Q Consensus 136 v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~ 213 (621)
|+||++|+|+ .|+++|+|.|+.++++++.+.. ..+++.+|+...+.++++||+|+++|+||+|+++.+|
T Consensus 81 v~~d~~g~~l---------~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~~~ 151 (481)
T TIGR01312 81 VLLDANGEVL---------RPAILWNDTRTAQECEELEAELGDERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIAKV 151 (481)
T ss_pred EEECCCcCCC---------ccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhhee
Confidence 9999999999 7899999999999888887764 5688999999999999999999999999999999999
Q ss_pred ecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCCC
Q 007010 214 MDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGH 293 (621)
Q Consensus 214 l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g~ 293 (621)
++++|||.|+|||+.. ++.+ ++++|++||+++++|++++|+.+|||+.+ || +++++++
T Consensus 152 ~~~~~yi~~~LtG~~~-~d~t--------------~as~tgl~d~~~~~W~~~~l~~~gi~~~~---Lp----~iv~~~~ 209 (481)
T TIGR01312 152 MLPKDYLRYRLTGEYV-TEYS--------------DASGTGWFDVAKRAWSKELLDALDLPESQ---LP----ELIESSE 209 (481)
T ss_pred eCchHHHhhhhcCCee-eeHH--------------HhhcccccccCCCCCCHHHHHHhCCCHHH---CC----CccCCCC
Confidence 9999999999999864 2333 25678999999999999999999999754 47 7889999
Q ss_pred ccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccC
Q 007010 294 PLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIP 373 (621)
Q Consensus 294 ~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~ 373 (621)
++|+ +++++|+++||++|+||++|++|++|+++|+ |..++ +++++++|||+++..+++++..++
T Consensus 210 ~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~~~~--------------g~~~~~~GTs~~~~~~~~~~~~~~ 273 (481)
T TIGR01312 210 KAGT-VRPEVAARLGLSAGVPVAAGGGDNAAGAIGT-GTVDP--------------GDAMMSLGTSGVVYAVTDKPLPDP 273 (481)
T ss_pred eeee-EcHHHHHHhCCCCCCeEEecchHHHHHhhCC-CcccC--------------CcEEEEecCceEEEEecCCcccCc
Confidence 9997 9999999999999999999999999999999 66654 589999999999888887766554
Q ss_pred CccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeE
Q 007010 374 GVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIH 453 (621)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~ 453 (621)
.......++..|+.|+.+++..++|.+++|+++.+.. ..|+.|++++++. |+++++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~~~~~-------------~~~~~l~~~~~~~---------~~~~~~~~ 331 (481)
T TIGR01312 274 AGAVHGFCHALPGGWLPMGVTLSATSSLEWFRELFGK-------------EDVEALNELAEQS---------PPGAEGVT 331 (481)
T ss_pred ccceeeeeeecCCceEEEeEehhhHHHHHHHHHHhCC-------------CcHHHHHHHHhcC---------CCCCCCeE
Confidence 3222223445678899999999999999999987631 1367777777653 35789999
Q ss_pred EccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHH
Q 007010 454 VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ 532 (621)
Q Consensus 454 flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Q 532 (621)
|+|||.|+|+|+||++++|+|+|++.+|+++|+ +||++||+||.+|++++.|++. +.++++|+++||+++|++|+|
T Consensus 332 ~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l---~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q 408 (481)
T TIGR01312 332 FLPYLNGERTPHLDPQARGSFIGLTHNTTRADL---TRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQ 408 (481)
T ss_pred EecccccCCCCCCCCCcceEEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHH
Confidence 999999999999999999999999999999985 5699999999999999999885 578899999999999999999
Q ss_pred HHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHHHHHH
Q 007010 533 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFRELFE 607 (621)
Q Consensus 533 i~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~ 607 (621)
|+||++|+||++++.+|++++|||++|++++|.|++++++.+.+.+..++|+| ++++++.|+++|++|+++|+
T Consensus 409 ~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~~~~~~~~~P--~~~~~~~y~~~~~~~~~~~~ 481 (481)
T TIGR01312 409 MLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLP--IAENVEAYEELYERYKKLYQ 481 (481)
T ss_pred HHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhccCCCceECC--CHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999988888888899999 99999999999999999873
No 13
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=4.7e-84 Score=671.02 Aligned_cols=483 Identities=23% Similarity=0.373 Sum_probs=409.4
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeec-cccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~-~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
++|+++||.||||+|+++||.+|++++..+.+++ +++.|||+||||.++|+.+..++++++.++++.+.+|.+||||.|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~iaaIGITNQ 83 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEIAAIGITNQ 83 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccceEEEEeecc
Confidence 4799999999999999999999999999999995 456999999999999999999999999999999999999999999
Q ss_pred -CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010 133 -CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (621)
Q Consensus 133 -~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 208 (621)
+++|+||++ |+|+ .|+|.|+|+|+++.|++|++.. +.+.++||..++|+|+..|+.|+.+|.|.+.+
T Consensus 84 RETtvvWdk~tG~Pi---------~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~ 154 (499)
T COG0554 84 RETTVVWDKETGKPI---------YNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYFSATKIKWILDNVPGARE 154 (499)
T ss_pred ceeEEEEeCCCCCCc---------ccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCccchhhhHHHhhChhhhh
Confidence 999999997 9999 8999999999999999999884 67888999999999999999999999998888
Q ss_pred hh----cceecchhHHhhhhccccc-cccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccc
Q 007010 209 MV----FRWMDLSDWLSYRATGDDT-RSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAK 283 (621)
Q Consensus 209 ~~----~~~l~~~dyl~~~LTG~~~-~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~ 283 (621)
|+ ..|.++++||.|+|||... .+|+|+ ||+|+|||+++.+||+++|+.||||+.++ |
T Consensus 155 ~ae~Gel~fGTiDtWLiw~LTgg~~h~TD~sN--------------ASRT~L~ni~~l~WD~elL~il~Ip~~~L---P- 216 (499)
T COG0554 155 RAEKGELLFGTIDTWLIWKLTGGKVHVTDYSN--------------ASRTMLFNIHSLEWDDELLELLGIPRSML---P- 216 (499)
T ss_pred HhhcCCeEEecchhhheeeccCCceeccccch--------------hHHHhcccccccCCCHHHHHHhCCChHhC---c-
Confidence 77 4699999999999999653 456654 67999999999999999999999998754 7
Q ss_pred cCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceec
Q 007010 284 IGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHM 363 (621)
Q Consensus 284 i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~ 363 (621)
+|.++.++.|. ... -.+...+||..-.||||||++|. +..+|| ..|++|||+.+ +.+++|+-.+
T Consensus 217 ---ev~~ss~~~G~-t~~-----~~~g~~vPI~g~~GDQQAALfGq-~c~~pG---~~K~TYGTG~F-~l~ntG~~~~-- 280 (499)
T COG0554 217 ---EVRPSSEIYGV-TGI-----GFLGAEVPITGVAGDQQAALFGQ-GCFEPG---MAKNTYGTGCF-LLMNTGEKPV-- 280 (499)
T ss_pred ---ccccccccccc-ccc-----cccCCceeeccccchhHHHHhhc-ccCCcC---cccccccccee-eeeccCCccc--
Confidence 56677788885 322 23446799999999999999998 567887 88888888887 5567776422
Q ss_pred ceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCC
Q 007010 364 AVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSP 443 (621)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p 443 (621)
.++...+..-.|. ......|.+||.+..+|++++||+|.+.-- +...+.+.++.++
T Consensus 281 -~S~~~LLtTIa~~----l~gk~~YALEGsif~aGaavqWLrd~L~~i------------~~a~~~e~~A~~~------- 336 (499)
T COG0554 281 -RSENGLLTTIAWG----LDGKVTYALEGSIFVAGAAVQWLRDGLGLI------------DDASDSEELAESV------- 336 (499)
T ss_pred -cCCCCceeEEEec----cCCeEEEEEecceeehhhHHHHHHHhcCcc------------CchhHHHHHHhcc-------
Confidence 1122121111221 111346999999999999999999975421 2223344444432
Q ss_pred CccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEec
Q 007010 444 FVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLLACG 522 (621)
Q Consensus 444 ~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~G 522 (621)
..++||+|.|.|.|.++||||+++||.|+||+..++++|++| |++|+|||+.+++++.|++ .+..++++++.|
T Consensus 337 ---~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~R---A~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDG 410 (499)
T COG0554 337 ---EDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIAR---ATLESIAYQTRDVLEAMEKDSGIKLTRLRVDG 410 (499)
T ss_pred ---CCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCceeEEEcC
Confidence 257899999999999999999999999999999999999765 9999999999999999987 566899999999
Q ss_pred CCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHH
Q 007010 523 GLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIF 602 (621)
Q Consensus 523 Gga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y 602 (621)
|.++|+++||+.||++|+||+++...|.+|+|||++|+.++|+|+|++|.. .....+++|+|.++.+. -+++|+.|
T Consensus 411 G~s~n~~lmQfqADilg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~-~~~~~~~~f~p~m~~~~---r~~~y~~W 486 (499)
T COG0554 411 GASRNNFLMQFQADILGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELA-ELWPLDKEFEPGMDEEE---REELYAGW 486 (499)
T ss_pred ccccchhHHHHHHHHhCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHH-hhhcccceeCCCCCHHH---HHHHHHHH
Confidence 999999999999999999999999999999999999999999999998854 45567899999776544 36789999
Q ss_pred HHHHHHHHHHH
Q 007010 603 RELFEQQVSQR 613 (621)
Q Consensus 603 ~~l~~~~~~~~ 613 (621)
++..++-+.++
T Consensus 487 ~~AV~rs~~~~ 497 (499)
T COG0554 487 KKAVKRSLGWR 497 (499)
T ss_pred HHHHHHHhccc
Confidence 98877665543
No 14
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=9.1e-83 Score=702.77 Aligned_cols=458 Identities=21% Similarity=0.254 Sum_probs=394.0
Q ss_pred CeEEEEecCccceeeEEEcCCCCEEEEEEeeecc--cc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI--WK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~--~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
+|+||||+|||++|+++||.+|++++..+.+++. .. .+|++||||++||+++++++++++++. ...+|.+|++|+
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~~I~~I~is~ 79 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TECHIRGITVTT 79 (470)
T ss_pred ceEEEEecCCCceEEEEEcCCCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--CccceEEEEEec
Confidence 4899999999999999999999999999998763 23 789999999999999999999999864 346799999999
Q ss_pred C-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHH
Q 007010 132 T-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWS 208 (621)
Q Consensus 132 ~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 208 (621)
| +++++||++|+|| +|+|+|+|+|+.++++++++.. +.++++||+++.+.++++||+|+++|+||+|+
T Consensus 80 ~~~~~v~~D~~G~pl---------~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~ 150 (470)
T PRK10331 80 FGVDGALVDKQGNLL---------YPIISWKCPRTAAVMENIERYISAQQLQQISGVGAFSFNTLYKLVWLKENHPQLLE 150 (470)
T ss_pred cccceEEECCCcCCc---------cCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCccccchHHHHHHHHHhCHHHHH
Confidence 8 9999999999999 8999999999999999998764 57899999999999999999999999999999
Q ss_pred hhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCccc
Q 007010 209 MVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSV 288 (621)
Q Consensus 209 ~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v 288 (621)
++++|++++|||.|+|||+.. ++.|+ ++.|++||+++++|++++++.+||++.+ || ++
T Consensus 151 ~~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~ell~~~gi~~~~---lP----~i 208 (470)
T PRK10331 151 QAHAWLFISSLINHRLTGEFT-TDITM--------------AGTSQMLDIQQRDFSPEILQATGLSRRL---FP----RL 208 (470)
T ss_pred HhhhhcCHHHHHHHhhcCccc-cchhh--------------ccceeeeecccCCCCHHHHHHcCCCHHH---CC----Cc
Confidence 999999999999999999875 34433 5577899999999999999999999754 46 78
Q ss_pred ccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCc
Q 007010 289 AFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 368 (621)
Q Consensus 289 ~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~ 368 (621)
+++++++|+ |++++|+++||++|+||++|++|++|+++|+ |.. + +++++++||+.++..++++
T Consensus 209 ~~~g~~~G~-v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~-g~~-~--------------g~~~~~~GT~~~~~~~~~~ 271 (470)
T PRK10331 209 VEAGEQIGT-LQPSAAALLGLPVGIPVISAGHDTQFALFGS-GAG-Q--------------NQPVLSSGTWEILMVRSAQ 271 (470)
T ss_pred ccccccccc-cCHHHHHHhCCCCCCeEEEccccHHHHHhCC-CCC-C--------------CCEEEecchhhhheeecCC
Confidence 899999997 9999999999999999999999999999998 653 3 4789999999988777776
Q ss_pred ccccCC--ccccc-cccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCc
Q 007010 369 KLFIPG--VWGPF-WSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 445 (621)
Q Consensus 369 ~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 445 (621)
+..+.. ..... .....++.|..++.... |.+++|++++|+. +...|++|++++++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~W~~~~~~~-----------~~~~y~~l~~~a~~~--------- 330 (470)
T PRK10331 272 VDTSLLSQYAGSTCELDSQSGLYNPGMQWLA-SGVLEWVRKLFWT-----------AETPYQTMIEEARAI--------- 330 (470)
T ss_pred CcccccccccccceeccccCceeeechhhHH-HHHHHHHHHHhcc-----------cCchHHHHHHHHhcC---------
Confidence 554321 00111 11233556655544444 4489999998742 124688888877653
Q ss_pred cCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007010 446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 524 (621)
Q Consensus 446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGg 524 (621)
|++++|++|+|+|.|+| ||+|+|++.+|+++|+ +||++|||||.+|++++.|++. +.++++|+++||+
T Consensus 331 ~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGg 399 (470)
T PRK10331 331 PPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGG 399 (470)
T ss_pred CCCCCceEecccccccC--------ceeEECCCCCcCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEccc
Confidence 36889999999999987 9999999999999995 5699999999999999999886 4578999999999
Q ss_pred CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcCCCChhhHHHHHH
Q 007010 525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPKVKKYHDA 597 (621)
Q Consensus 525 a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~ 597 (621)
++|++|+||+|||||+||+++...|++++|||++|++++|.|+|++++.+.+....++|+| + .+++.|++
T Consensus 400 a~s~~w~Qi~Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~~~~~~~~P--~-~~~~~y~~ 469 (470)
T PRK10331 400 SRNALWNQIKANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMKYQYRYFYP--Q-TEPEFIEE 469 (470)
T ss_pred ccCHHHHHHHHHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHhhcceeECC--C-ccHhhhhc
Confidence 9999999999999999999999999999999999999999999999988888877789999 7 55777764
No 15
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-82 Score=701.94 Aligned_cols=492 Identities=29% Similarity=0.444 Sum_probs=427.0
Q ss_pred CCCCeEEEEecCccceeeEEEcCC-CCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 52 RSRSVFLGVDVGTGSARAGLFDES-GKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~-g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
|+++|+||||+|||++|++++|.+ |++++..+.+++..+ .+||.||||++||+++++++++++++..++..+|.+|+|
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~~~I~aI~i 80 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDPDAIAAIGI 80 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccChhhceEEEE
Confidence 456899999999999999999998 899999999998774 999999999999999999999999988778899999999
Q ss_pred cCC-CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchh
Q 007010 130 AAT-CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQES 206 (621)
Q Consensus 130 s~~-~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~ 206 (621)
|+| +++|++|++|+|| +|+|+|+|.|+.++++++.+.. ++.+..||+++.+.++++||+|+++|+||+
T Consensus 81 s~~~~g~vllD~~g~~L---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~ 151 (502)
T COG1070 81 SGQGHGLVLLDANGEPL---------RPAILWNDTRAAEEVEELEERLGGEALYARTGLQAMPGFTAPKLLWLKENEPDL 151 (502)
T ss_pred eccccceEEECCCCCCc---------cccceecchhhHHHHHHHHhhccchhhhhhcCCCcCccccHHHHHHHHhcCcHH
Confidence 998 9999999999999 8999999999999999999875 467778999999999999999999999999
Q ss_pred HHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCc-cccccccccC
Q 007010 207 WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGD-LIDGHHAKIG 285 (621)
Q Consensus 207 ~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~-~~~~~lp~i~ 285 (621)
|+|+.+|++++|||.|+|||+.. ++.|+ +++|++||+++++|+.++|+.+|+++ .+ ||
T Consensus 152 ~~k~~~il~~~dyl~~rLTG~~~-~e~s~--------------as~t~l~d~~~~~w~~~~l~~~gl~~~~~---lp--- 210 (502)
T COG1070 152 FAKAAKILLIKDYLRYRLTGEFA-TEISD--------------ASGTGLLDIRTRKWDWELLAALGLPERDL---LP--- 210 (502)
T ss_pred HHhhhheechHHHHHHHHhCCcc-ccccc--------------ccccccccccccccCHHHHHHcCCChHHh---CC---
Confidence 99999999999999999999975 34443 45788999999999999999999995 43 47
Q ss_pred cccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecce
Q 007010 286 RSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAV 365 (621)
Q Consensus 286 ~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~ 365 (621)
+++++++++|. |++++|+++||++++||++|+||.+++++|+ |+.++ +++..++||+.++...
T Consensus 211 -~vv~~g~~~G~-l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~-g~~~~--------------g~~~~~~gts~~~~~~ 273 (502)
T COG1070 211 -PVVEPGEVLGT-LTPEAAEELGLPAGTPVVVGGGDNAAAALGA-GAVDP--------------GDVSSSTGTSGVVRAA 273 (502)
T ss_pred -CccCccceecc-ccHHHHHHhCCCCCCeEEECCchHHHHhccC-CCcCC--------------CcEEEEeccccEEeee
Confidence 78999999997 9999999999999999999999999999999 78865 4688999999998888
Q ss_pred eCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCc
Q 007010 366 SRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFV 445 (621)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~ 445 (621)
++++..++......+++..++.|+.++..+++|.+++|+++.+...+ .+.++...+...+ .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~------------~~~~~~~~~~~~~-------~ 334 (502)
T COG1070 274 TDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGWLLEWLRELFGLAE------------SYPELLEEALAVP-------A 334 (502)
T ss_pred ccccccCCccceeeecccCCCeEEEEEEecccHHHHHHHHHHhcccc------------CcHHHHHHHHhcc-------C
Confidence 88755554332222344557888888999999999999999875321 1222222222211 2
Q ss_pred cCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007010 446 AALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 524 (621)
Q Consensus 446 ~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGg 524 (621)
++++.++.|+|||.|||.|++++.+|+.|+|++..|++.++. ||++||++|.++..++.|++. +.++++|+++||+
T Consensus 335 ~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~---ravlEgva~~l~~~~~~l~~~~g~~~~~i~~~GGg 411 (502)
T COG1070 335 PAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLA---RAVLEGVAFALADGLEALEELGGKPPSRVRVVGGG 411 (502)
T ss_pred CCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCccEEEEECCc
Confidence 367899999999999999999999999999999999998864 599999999999999999997 7889999999999
Q ss_pred CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccC-CHHHHHHHhhcCCcEEcCCCChhhHHHHHHHHHHHH
Q 007010 525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-SLIEAMKAMNAAGQVIHPSKDPKVKKYHDAKYLIFR 603 (621)
Q Consensus 525 a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~-s~~ea~~~~~~~~~~~~P~~~~~~~~~y~~~y~~y~ 603 (621)
|||++|+||+||++|+||.++...|++++|+|++++.+++.+. +.+++.+.+.. .+++.| |++.++.|+++|++|+
T Consensus 412 ars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p--~~~~~~~y~~~~~~~~ 488 (502)
T COG1070 412 ARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVD-ARRIIP--DPERAAAYQELYERYR 488 (502)
T ss_pred ccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcccc-ccccCC--ChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888888876554 44554444443 788999 9999999999999999
Q ss_pred HHHHHHHHHHHH
Q 007010 604 ELFEQQVSQRSI 615 (621)
Q Consensus 604 ~l~~~~~~~~~~ 615 (621)
++|++++++.+.
T Consensus 489 ~~y~~~~~~~~~ 500 (502)
T COG1070 489 ALYQALLALYRQ 500 (502)
T ss_pred HHHHHHHHHHhh
Confidence 999999886543
No 16
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=6.8e-80 Score=678.66 Aligned_cols=452 Identities=21% Similarity=0.290 Sum_probs=386.8
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeec--cc-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQ--IW-KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~--~~-~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
++||||+|||++|+++||.+|++++..+.+++ .. +.+|+.||||++||+++++++++++++ ..+.+|++|++|+|
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~I~aI~~s~~ 79 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKHIRGIAVTTF 79 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhceEEEEEecc
Confidence 78999999999999999999999999998876 33 378999999999999999999999865 34567999999998
Q ss_pred -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010 133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (621)
Q Consensus 133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 209 (621)
+++|+||++|+|| +|+|+|+|+|+.++++++.+.. ++++++||+++.+.++++||+|+++|+||+|+|
T Consensus 80 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~ 150 (465)
T TIGR02628 80 GVDGAPFDKQGNQL---------YPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAYSFNTLYKLVWLKEHHPQLFER 150 (465)
T ss_pred ccceEEECCCCCCc---------cccccccCcccHHHHHHHHHhhCHHHHHHHhCCCccccchHHHHHHHHHhChHHHHH
Confidence 9999999999999 8999999999999999998764 578999999999999999999999999999999
Q ss_pred hcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccc
Q 007010 210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289 (621)
Q Consensus 210 ~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~ 289 (621)
+++|++++|||.|+|||+.. ++.++ +|.|++||+++++|++++|+.+||++.+ || +++
T Consensus 151 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~w~~ell~~~gi~~~~---lP----~l~ 208 (465)
T TIGR02628 151 MHKFVFISSMITHRLTGEFT-TDITM--------------AGTSMMTDLTQRNWSPQILQALGLSRRL---FP----PLV 208 (465)
T ss_pred HHHhhCcHHHHHHHHhCCcc-cchhh--------------hhcceeeecCcCCCCHHHHHHcCCCHHH---CC----Ccc
Confidence 99999999999999999875 33332 5678899999999999999999999754 46 688
Q ss_pred cCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcc
Q 007010 290 FPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNK 369 (621)
Q Consensus 290 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~ 369 (621)
++++++|+ |++++|+++||++||||++|++|++|+++|+ |. .+ +++++++|||+++...++++
T Consensus 209 ~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~-g~-~~--------------g~~~~~~GTs~~~~~~~~~~ 271 (465)
T TIGR02628 209 EAGEQIGT-LQNSAAAMLGLPVGVPVISAGHDTQFALFGS-GA-EQ--------------NQPVLSSGTWEILMARSQQV 271 (465)
T ss_pred cCCcccee-eCHHHHHHhCCCCCCCEEecCccHHHHHhcc-CC-CC--------------CcEEEeccchhhheeccCcC
Confidence 89999997 9999999999999999999999999999998 65 44 47899999999887777766
Q ss_pred cccCCcc-ccccc--cccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCcc
Q 007010 370 LFIPGVW-GPFWS--AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (621)
Q Consensus 370 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (621)
..++... ..+.+ +..++.|...+...++| +++|+++.+...+ ..+.+.|++|++.+++. |
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~-------~~~~~~~~~l~~~a~~~---------~ 334 (465)
T TIGR02628 272 DTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-VLEWVRKLFFTAE-------TPSDHYYQMMIEEARLI---------A 334 (465)
T ss_pred CCCccccccccccccccCCceeeehhhhhhhh-HHHHHHHHhcchh-------hccccHHHHHHHHHHhC---------C
Confidence 6554321 11111 12356676555455555 8999999764211 01123578888877653 3
Q ss_pred CCCCCeE-EccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCC
Q 007010 447 ALTEDIH-VLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGL 524 (621)
Q Consensus 447 ~g~~gl~-flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGg 524 (621)
++++|++ |+|++. +.+||+|+|++.+|++.|+ +||++|||||.+|++++.|++. +.++++|+++||+
T Consensus 335 ~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l---~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGg 403 (465)
T TIGR02628 335 NGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHI---YRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGG 403 (465)
T ss_pred CCCCcceeecccCC--------cccceeEECCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCc
Confidence 6888998 888763 5679999999999999985 5699999999999999999886 4688999999999
Q ss_pred CCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCCcEEcC
Q 007010 525 AKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAGQVIHP 585 (621)
Q Consensus 525 a~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~~~~~P 585 (621)
++|++|+||+|||+|+||++++..|++++|||++|++++|.|+|++++.+.+.+..++|+|
T Consensus 404 a~s~~w~Qi~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~~~~~~~~P 464 (465)
T TIGR02628 404 SKNTLWNQIRANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHPQYRYFYP 464 (465)
T ss_pred cCCHHHHHHhhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhhccceeeCC
Confidence 9999999999999999999999999999999999999999999999988888877889999
No 17
>PLN02669 xylulokinase
Probab=100.00 E-value=2.1e-76 Score=659.99 Aligned_cols=489 Identities=16% Similarity=0.129 Sum_probs=401.7
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecc----ccCCCccccCHH----------HHHHHHHHHHHHHHHHcCC
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WKEGDCIEQSST----------DIWHAICAAVDSACSLANV 119 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~----~~~~g~~eqd~~----------~~~~~~~~~l~~~~~~~~~ 119 (621)
++|+||||+|||++|+++||.+|+++++++.+++. +..+|++||||+ .||++++.+++++. +.+.
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~~~~ 85 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSNLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-KEKF 85 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCCCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-HcCC
Confidence 46999999999999999999999999999999863 225677899998 78899999999987 4566
Q ss_pred CCCCEEEEEEcCC-CceEEecC-CCCceeecCCCC----------CCcceeEEcCcchHHHHHHHHccC---hhHHhhhC
Q 007010 120 DGEEVKGVGFAAT-CSLVAVDA-DGSPVSVSWNGD----------SRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCG 184 (621)
Q Consensus 120 ~~~~I~aIgis~~-~~~v~vD~-~G~pl~~~~~~~----------~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG 184 (621)
+.++|++|++|+| |++|+||+ .|+||..+.... +.+|+++|+|.|+.++++++.+.. ++++++||
T Consensus 86 ~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg~~~l~~~tG 165 (556)
T PLN02669 86 PFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGGAAELSKLTG 165 (556)
T ss_pred ChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCcHHHHHHHHC
Confidence 7788999999998 99999999 588874332221 125899999999999999998764 47899999
Q ss_pred CCCCCCChHHHHHHHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCC
Q 007010 185 GAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWD 264 (621)
Q Consensus 185 ~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws 264 (621)
+++++.|+.+||+|+++|+||+|+++.+|+.++|||.|+|||+...++.|+ +|++++||+++++||
T Consensus 166 ~~~~~~~t~~ki~wl~~~~Pe~y~~t~~i~~~~dyl~~~LtG~~~~~D~sd--------------asg~~l~Di~~~~Ws 231 (556)
T PLN02669 166 SRAYERFTGPQIRKIYETQPEVYHDTERISLVSSFMASLLVGDYASIDETD--------------GAGMNLMDIEKRCWS 231 (556)
T ss_pred CcccccccHHHHHHHHHhChHHHHHHHhhccHHHHHHHhhcCCCccccchh--------------hhhhhhhccccCCcC
Confidence 999999999999999999999999999999999999999999864345553 456789999999999
Q ss_pred HHHHHHcCCC-ccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhh
Q 007010 265 DEFWEEIGLG-DLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKEN 343 (621)
Q Consensus 265 ~~ll~~~gi~-~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~ 343 (621)
+++|+.+++. +. .|| +++++++++|+ |++++|+++||++||||++|++|++|+++|+ |+.+|
T Consensus 232 ~~ll~~~~~~l~~---~Lp----~~~~~~~~~G~-v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~-g~~~~-------- 294 (556)
T PLN02669 232 KAALEATAPGLEE---KLG----KLAPAHAVAGK-IHPYFVQRFGFSSNCLVVQWSGDNPNSLAGL-TLSTP-------- 294 (556)
T ss_pred HHHHHhhCccHHH---HCc----CCCCCCcceee-eCHHHHHHhCCCCCCEEEEecchHHHHHhcc-CCCCC--------
Confidence 9999999543 12 346 67888999997 9999999999999999999999999999999 77665
Q ss_pred hhhhccceEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCC
Q 007010 344 EEEAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHV 423 (621)
Q Consensus 344 ~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~ 423 (621)
+++.+++|||+++.++++++..++.. ..+++...|+.|+.+++..++|.+++|+++.+. .
T Consensus 295 ------g~~~~slGTs~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~-------------~ 354 (556)
T PLN02669 295 ------GDLAISLGTSDTVFGITREPQPSLEG-HVFPNPVDPESYMVMLCYKNGSLTREDIRNRCA-------------D 354 (556)
T ss_pred ------CeEEEEEcccceEEEecCCCCCCCCc-ceeeCccCCCCeEEEEEecchHHHHHHHHHHhc-------------c
Confidence 58999999999988888876655432 123333448899999999999999999999763 1
Q ss_pred CHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCC----CCCCCceeEEcCCCC---------CCHHHHHHHH
Q 007010 424 SLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI----ADPKSKGIICGMTLD---------SSEKQLALLY 490 (621)
Q Consensus 424 ~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~----~d~~arg~f~Gl~~~---------~~~~~~~~~~ 490 (621)
+.|+.|++++++. |++++|++++||+.||+.|+ +++.++|.|+|++.+ |++.|+ +
T Consensus 355 ~~~~~~~~~~~~~---------~~g~~g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~---~ 422 (556)
T PLN02669 355 GSWDVFNKLLEQT---------PPLNGGKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSE---V 422 (556)
T ss_pred CcHHHHHHHHHhC---------CCCCCCEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHH---H
Confidence 3477788877653 36889999899999999996 577788999999988 578885 5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCC--
Q 007010 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSS-- 568 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s-- 568 (621)
||++||++|++|.+++.|+ .+.++++|+++||+++|+.|+||+|||||+||++++..|++++|||++|+++. +.+
T Consensus 423 RAvlEg~a~~~r~~~~~l~-~~~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~ea~alGAA~~A~~~~--~~~~~ 499 (556)
T PLN02669 423 RAIIEGQFLSMRAHAERFG-MPVPPKRIIATGGASANQSILKLIASIFGCDVYTVQRPDSASLGAALRAAHGW--LCNEQ 499 (556)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCCCchHHHHHHHHHHHH--hhhhh
Confidence 6999999999999999996 35678999999999999999999999999999999999999999999999954 432
Q ss_pred -----HHHHHHHhhc---CCcEE--cCCCCh-hhHHHHHHHHHHHHHHHHHHHH
Q 007010 569 -----LIEAMKAMNA---AGQVI--HPSKDP-KVKKYHDAKYLIFRELFEQQVS 611 (621)
Q Consensus 569 -----~~ea~~~~~~---~~~~~--~P~~~~-~~~~~y~~~y~~y~~l~~~~~~ 611 (621)
+++....... ....+ +| .+ +..+.|..+.++|.+|-+.+..
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~ 551 (556)
T PLN02669 500 GSFVPISCLYEGKLEATSLSCKLAVKA--GDQELLSQYGLLMKKRMEIEQQLVE 551 (556)
T ss_pred cccCChhhhcccccccCcccceeeccC--CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 11122 55 33 6777888888888887766543
No 18
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=4.2e-70 Score=599.50 Aligned_cols=429 Identities=17% Similarity=0.161 Sum_probs=350.7
Q ss_pred EEEecCccceeeEEEcCC---CCEE-EEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 58 LGVDVGTGSARAGLFDES---GKLL-GSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~---g~vv-~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
||||+|||++|++++|.+ |+++ .+...+++... .+++.||||+.||+++.++++++.+. ..+|.+||||+|
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~Igis~q 76 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDSIGIDTW 76 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceEEEEecc
Confidence 589999999999999987 5666 56666655443 78899999999999999999998753 346999999998
Q ss_pred -CceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHh
Q 007010 133 -CSLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSM 209 (621)
Q Consensus 133 -~~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 209 (621)
+++|+||++|+|| +|+|+|+|.|+.++++++.+.. ++++++||+++.+.++++||+|+++|+||+|+|
T Consensus 77 ~~~~v~~D~~G~~l---------~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~ 147 (454)
T TIGR02627 77 GVDFVLLDQNGQRV---------GDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEK 147 (454)
T ss_pred ceeEEEEcCCCCCc---------cCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCcCCccHHHHHHHHHHhChhHHHH
Confidence 9999999999999 8999999999999999998764 678999999999999999999999999999999
Q ss_pred hcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccc
Q 007010 210 VFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVA 289 (621)
Q Consensus 210 ~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~ 289 (621)
+++|++++|||.|+|||+.. ++.|+ +|+|++||+++++|++++++.+||++.+ || +++
T Consensus 148 ~~~~l~~~dyl~~~LTG~~~-~d~s~--------------As~t~l~d~~~~~W~~~ll~~~gi~~~~---lP----~l~ 205 (454)
T TIGR02627 148 VAHFLLIPDYLNYRLTGKKV-WEYTN--------------ATTTQLVNINTDDWDEDLLAYLGVPAAW---FG----RPT 205 (454)
T ss_pred HHHhCCHHHHHHHheeCCce-eeeeh--------------hhhcccccCCCCCcCHHHHHHcCCCHHH---cC----Ccc
Confidence 99999999999999999875 33332 5678899999999999999999999753 46 688
Q ss_pred cCCCccCCCccHHHHHHcCCCCCCcEEE-echhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCc
Q 007010 290 FPGHPLGSGLTPAAAKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRN 368 (621)
Q Consensus 290 ~~g~~~G~~l~~~~a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~ 368 (621)
++++++|. +.+ +|+ +|+||++ |+||++|+++|+ |..+| +++++++|||.++...+++
T Consensus 206 ~~~~~~G~-~~~-----~gl-~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GTs~~~~~~~~~ 263 (454)
T TIGR02627 206 HPGNVIGL-WEC-----PQG-NQIPVVAVATHDTASAVVAA-PLQGE--------------NAAYLSSGTWSLMGFESQT 263 (454)
T ss_pred CCCCeeEE-eec-----ccC-CCCCEEEECCchHHHHHhcC-CCCCC--------------CcEEEEEcHHHHhcccCCC
Confidence 99999996 653 467 7999998 889999999998 66654 5899999999988777776
Q ss_pred ccccCCcccc-cc-ccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCcc
Q 007010 369 KLFIPGVWGP-FW-SAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVA 446 (621)
Q Consensus 369 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~ 446 (621)
+..++..+.. +. ....++.|...+... ++ |+++.+... .+.+.|+++++.+.. +|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~~~~~~---------~~~~~~~~l~~~a~~------~p--- 320 (454)
T TIGR02627 264 PITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQRVCRE---------RDINDLPALIEQAQA------LP--- 320 (454)
T ss_pred CCCCHHHHHhccccccccccEEEeecchh-hh----HHHHHHHhh---------hccccHHHHHHHhcC------CC---
Confidence 6655432211 11 123356676654443 33 777765321 012345666554432 22
Q ss_pred CCCCCeEEccccCCCCCCCCCCC-Ccee------EEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEE
Q 007010 447 ALTEDIHVLPDFHGNRSPIADPK-SKGI------ICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTL 518 (621)
Q Consensus 447 ~g~~gl~flP~l~Ger~P~~d~~-arg~------f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I 518 (621)
+ |.|++.|++.|+||+. +++. |+|++.+|++.|+ +||++|||||.+|++++.|++. +.++++|
T Consensus 321 ~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i 391 (454)
T TIGR02627 321 A------FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQL 391 (454)
T ss_pred C------CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEE
Confidence 2 3466789999999995 5554 4999999999995 5699999999999999999885 6788999
Q ss_pred EEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHh
Q 007010 519 LACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAM 576 (621)
Q Consensus 519 ~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~ 576 (621)
+++||+++|++|+||+||++|+||.+.. .|++++|||++|++++|.|++++++.+.+
T Consensus 392 ~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~~~ 448 (454)
T TIGR02627 392 HIVGGGSQNAFLNQLCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQIV 448 (454)
T ss_pred EEECChhhhHHHHHHHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 9999999999999999999999998765 77999999999999999999998874433
No 19
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-68 Score=564.64 Aligned_cols=491 Identities=35% Similarity=0.553 Sum_probs=400.9
Q ss_pred CCeEEEEecCccceeeEEEc-CCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCC---CCEEEEE
Q 007010 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDG---EEVKGVG 128 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~---~~I~aIg 128 (621)
+++++|||+||||+|++||| .+|+++..++.+++... ++||+||||.++|++++++|+++.+..+..+ ..|.+|+
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 58999999999999999999 79999999999987665 8999999999999999999999988765443 3466799
Q ss_pred EcCC-CceEEecCC-CCceeecCCCCCCcceeEEcCcchHHHHHHHHccCh-hH---HhhhCCCCCCCChHHHHHHHHHh
Q 007010 129 FAAT-CSLVAVDAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRNS-PV---LQYCGGAVSPEMQPPKLLWVKEN 202 (621)
Q Consensus 129 is~~-~~~v~vD~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~~-~~---~~~tG~~~~~~~~~~kl~Wl~~~ 202 (621)
++.| ++.|+|++. |+|+ .++|.|+|.|+..+++++++... .. ..++|.+++++|.++||+||++|
T Consensus 85 v~~qr~~~v~w~~~tg~p~---------~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn 155 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPL---------TNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGLPVSPEFSAPKLRWLLDN 155 (516)
T ss_pred EEecCCceEEeecCCCCcc---------cceEEeeccccHHHHHHHHhcCCchhcccccccCCccccccchheehHHhhh
Confidence 9998 999999988 9999 89999999999999999998762 22 26899999999999999999999
Q ss_pred cchh-HHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccc
Q 007010 203 LQES-WSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHH 281 (621)
Q Consensus 203 ~pe~-~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~l 281 (621)
.|++ +......+..++|+.|++++-.....+ .-.+.+++|++++||..+..|+..+++.+|||..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~---------~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~ll--- 223 (516)
T KOG2517|consen 156 VPEVLKAKEEGGFDLGTFDTWLATGLTGRSSC---------HCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLL--- 223 (516)
T ss_pred CHHHHHHHHhcccchhhhhhheeecCCcccee---------ccccccccccccccchhhhhhhhhhhhhhCCCcccC---
Confidence 9998 777778777788777777664432111 001234578899999999999999999999998764
Q ss_pred cccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccce
Q 007010 282 AKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTC 361 (621)
Q Consensus 282 p~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~ 361 (621)
| ++..+++++|. + .+..+|+.+|+||.++.+|++|+++|.++ .++ ++...++||+..
T Consensus 224 p----~i~s~~e~~g~-~---~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~-~~~--------------g~~~~t~~t~~F 280 (516)
T KOG2517|consen 224 P----DIRSSSEVYGT-T---AAGDLGLLEGTPVSSCLGDQQASMVGQMC-YKP--------------GCAKLTYGTGCF 280 (516)
T ss_pred C----ccccccccccc-c---cccccccccCcceeechhhHHHHHHhHhh-hcC--------------cceEEeeCCceE
Confidence 6 56778888885 3 23467799999999999999999999854 333 467777888776
Q ss_pred ecceeCccc--ccCCcccccccc-cc--CCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhh
Q 007010 362 HMAVSRNKL--FIPGVWGPFWSA-MV--PKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESM 436 (621)
Q Consensus 362 ~~~~~~~~~--~~~~~~~~~~~~-~~--~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 436 (621)
+..++.... ..++.|...... .. +-.|++++....+|..++|+++.+...+. ...+++++.+.
T Consensus 281 l~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~------------~~~i~~~~~~~ 348 (516)
T KOG2517|consen 281 LLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEE------------LNEIEKLAAEV 348 (516)
T ss_pred EeeccCCccccccCccceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHH------------HHHHHHHHHhh
Confidence 655554321 122332211110 11 11377888888889999999987642211 12233444332
Q ss_pred hhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCc
Q 007010 437 IHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHG-HKI 515 (621)
Q Consensus 437 ~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g-~~~ 515 (621)
..+.+++|+|.|.|.|+|+|||++||+|+|++.+++.+|+++ |++|+|||++|++++.|++.+ .++
T Consensus 349 ----------~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~---A~leai~fqtr~Il~am~~~~~~~i 415 (516)
T KOG2517|consen 349 ----------NLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLAR---AALEAIAFQTREILEAMERDGGHPI 415 (516)
T ss_pred ----------cccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 258899999999999999999999999999999999999876 999999999999999998866 699
Q ss_pred CEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccc--cCCHHHHHHHhhcCCcEEcCCCChhhHH
Q 007010 516 DTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR--YSSLIEAMKAMNAAGQVIHPSKDPKVKK 593 (621)
Q Consensus 516 ~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~--~~s~~ea~~~~~~~~~~~~P~~~~~~~~ 593 (621)
+.++++||.++|++++|++||++|+||+++...|.+++|||++|+.+.|. |++.+++. +....++|.|+.+. +
T Consensus 416 ~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~~~~~~~P~~~~---~ 490 (516)
T KOG2517|consen 416 STLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--LTGVGKVFRPNIDD---K 490 (516)
T ss_pred ceeeeccccccCHHHHHHHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--cCCCcceecCCCCc---H
Confidence 99999999999999999999999999999999999999999999999999 66666643 56788999995443 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007010 594 YHDAKYLIFRELFEQQVSQRSIMAQ 618 (621)
Q Consensus 594 ~y~~~y~~y~~l~~~~~~~~~~~~~ 618 (621)
.++.+|++|++++++++.|++++++
T Consensus 491 ~~~~ky~~w~~ave~~~~~~~~~~~ 515 (516)
T KOG2517|consen 491 LLDKKYQIWLKAVERQLGYRRIVDE 515 (516)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhccC
Confidence 8899999999999999999999875
No 20
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=1.2e-68 Score=588.71 Aligned_cols=444 Identities=15% Similarity=0.159 Sum_probs=361.8
Q ss_pred EEEcCCCC-EEEEEEeeeccc--cCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-CceEEecCCCCce
Q 007010 70 GLFDESGK-LLGSASSPIQIW--KEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSLVAVDADGSPV 145 (621)
Q Consensus 70 ~l~d~~g~-vv~~~~~~~~~~--~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~v~vD~~G~pl 145 (621)
+-+|.+|+ +.-++.++++.. ..+++.+|||+.||+++.++++++... ..+|.+||||+| +++|+||++|+||
T Consensus 3 ~~~~~~~~~~~~~e~~r~~~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~----~~~I~~Igis~q~~~~v~lD~~G~pL 78 (471)
T PRK10640 3 ARYERECRSLTLREIHRFNNGLHSQDGFDTWDVDSLESAIRLGLNKVCEE----GIRIDSIGIDTWGVDYVLLDKQGQRV 78 (471)
T ss_pred eEEcCCCceEEEEEEEecCCCCeeeCCeeEECHHHHHHHHHHHHHHHhhc----CCCccEEEEcCCcccEEEECCCCCCc
Confidence 34665444 444445555433 378899999999999999999888652 467999999998 9999999999999
Q ss_pred eecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhcceecchhHHhhh
Q 007010 146 SVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYR 223 (621)
Q Consensus 146 ~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~ 223 (621)
+|+|+|+|.|+.++++++.+.. +++|++||+++.+.++++||+|+++|+|++|+++++|++++|||.|+
T Consensus 79 ---------~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~l~~~dyl~~~ 149 (471)
T PRK10640 79 ---------GLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVAHALLIPDYFSYR 149 (471)
T ss_pred ---------CCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhhHeecHHHHHHHH
Confidence 8999999999999999998764 67899999999999999999999999999999999999999999999
Q ss_pred hccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccCCCccCCCccHHH
Q 007010 224 ATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAA 303 (621)
Q Consensus 224 LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~ 303 (621)
|||+.. ++.|. +|+|++||+++++||+++++.+||+..+ || +++++++++|. ++++
T Consensus 150 LTG~~~-~d~s~--------------as~t~l~d~~~~~W~~ell~~~Gi~~~~---LP----~lv~~~~~~G~-v~~~- 205 (471)
T PRK10640 150 LTGKMN-WEYTN--------------ATTTQLVNINSDDWDESLLAWSGAPKAW---FG----RPTHPGNVIGH-WICP- 205 (471)
T ss_pred HhCCcc-eeecH--------------hhhccccCCCcCCcCHHHHHHcCCCHHH---cC----CCcCCCcccee-eecc-
Confidence 999975 33332 5678899999999999999999999754 46 68899999996 8765
Q ss_pred HHHcCCCCCCcEEE-echhhhhhhcccccccCccchhhhhhhhhhccceEEEEecccceecceeCcccccCCc-cccccc
Q 007010 304 AKELGLVPGTPVGT-SLIDAHAGGVGVMESVPESVSEAKENEEEAICHRMVLVCGTSTCHMAVSRNKLFIPGV-WGPFWS 381 (621)
Q Consensus 304 a~~~Gl~~g~pV~~-g~~D~~aa~lg~~g~~~~g~~~~~~~~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~-~~~~~~ 381 (621)
+| .|+||++ |+||++|+++|+ |...+ +++++++|||+++..+++++..++.. ...+..
T Consensus 206 ---~g--~g~pVv~~g~~D~~aa~~g~-g~~~~--------------g~~~~s~GT~~~~~~~~~~p~~~~~~~~~~~~~ 265 (471)
T PRK10640 206 ---QG--NEIPVVAVASHDTASAVIAS-PLNDS--------------DAAYLSSGTWSLMGFESQTPFTNDTALAANITN 265 (471)
T ss_pred ---cC--CCCCEEEeCCCcHHHHhhcc-CCCCC--------------CeEEEEeccHhhhheecCCCcCCHHHHHhccCc
Confidence 35 6899998 689999999998 66654 58999999999988888876654422 111111
Q ss_pred -cccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCC
Q 007010 382 -AMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHG 460 (621)
Q Consensus 382 -~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~G 460 (621)
...++.|.++..+. | +|+++++.... +...|+++.+++++. ++++|++ +| .|
T Consensus 266 ~~~~~g~~~~~~~~~--g---~W~~~~~~~~~---------~~~~~~~l~~~a~~~----------~g~~gli-~p--~g 318 (471)
T PRK10640 266 EGGAEGRYRVLKNIM--G---LWLLQRVLQER---------QITDLPALIAATAAL----------PACRFLI-NP--ND 318 (471)
T ss_pred cCCCCceEEEecchh--H---HHHHHHHHHHh---------ccCCHHHHHHHHHhC----------CCCCcee-CC--Cc
Confidence 23466776655332 3 89999874321 123466776655442 2678886 68 69
Q ss_pred CCCCCCCC-CCceeEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHH
Q 007010 461 NRSPIADP-KSKGIICGMTLDS------SEKQLALLYLATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQ 532 (621)
Q Consensus 461 er~P~~d~-~arg~f~Gl~~~~------~~~~~~~~~rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Q 532 (621)
+|. ||+ ++||+|+|++.+| ++.|+ +||++||+||.+|++++.|++. +.++++|+++||+++|++|+|
T Consensus 319 er~--~~~~~arg~~~gl~~~~G~~~~~~~~~l---~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Q 393 (471)
T PRK10640 319 DRF--INPPSMCSEIQAACRETAQPVPESDAEL---ARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQ 393 (471)
T ss_pred ccc--cCchhhHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHH
Confidence 994 675 8999998777776 88885 5699999999999999999874 677899999999999999999
Q ss_pred HHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhc---CCcEEcCCCChhhHHHHHHHHHHHHHHHHH
Q 007010 533 QHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNA---AGQVIHPSKDPKVKKYHDAKYLIFRELFEQ 608 (621)
Q Consensus 533 i~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~---~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~ 608 (621)
|+|||+|+||.+... |++++|||++|++++|.|++++++ +.++. ..++|+| +++ ..|++.|..|+++|+.
T Consensus 394 i~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P--~~~--~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 394 LCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTP--NPD--SEIARHVAQFQSLRQT 466 (471)
T ss_pred HHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcC--CCh--HHHHHHHHHHHHHhcc
Confidence 999999999988664 899999999999999999999876 56665 5789999 665 6789999999999864
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=2.9e-49 Score=400.09 Aligned_cols=241 Identities=39% Similarity=0.683 Sum_probs=217.4
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (621)
|+||||+|||++|++++|++|+++...+.+++... .+|+.||||++||+++++++++++++.+.++.+|++|++|+| +
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~aI~is~~~~ 80 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIKAIGISGQGH 80 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEEEEEEEE-SS
T ss_pred CEEEEEEcccceEEEEEeCCCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeEEEEeccccC
Confidence 79999999999999999999999999999998766 789999999999999999999999998888899999999998 9
Q ss_pred ceEEecCCCCceeecCCCCCCcceeEEcCcchHHHHHHHHccC--hhHHhhhCCCCCCCChHHHHHHHHHhcchhHHhhc
Q 007010 134 SLVAVDADGSPVSVSWNGDSRRNIIVWMDHRAVKQAEKINSRN--SPVLQYCGGAVSPEMQPPKLLWVKENLQESWSMVF 211 (621)
Q Consensus 134 ~~v~vD~~G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~~l~~~~--~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 211 (621)
++|+||++|+|+ +|+|+|+|+|+.++++++++.. +++++.||.++++.++++||+|+++|+||+|++++
T Consensus 81 ~~v~~D~~~~pl---------~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~ 151 (245)
T PF00370_consen 81 GLVLLDKDGKPL---------RPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA 151 (245)
T ss_dssp EEEEEETTSSBS---------SCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH
T ss_pred Ccceeccccccc---------cccccccccchhhHHHHHHhhcCcceeeeeccccccccchHHHHHHHHHhCchhhhhhh
Confidence 999999999999 8999999999999999998865 68899999999999999999999999999999999
Q ss_pred ceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCHHHHHHcCCCccccccccccCcccccC
Q 007010 212 RWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDDEFWEEIGLGDLIDGHHAKIGRSVAFP 291 (621)
Q Consensus 212 ~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~~ll~~~gi~~~~~~~lp~i~~~v~~~ 291 (621)
+|++++|||.|+|||+... +.| +++.|++||+++++|++++++.+||+..+ || +++++
T Consensus 152 ~~~~~~dyl~~~LtG~~~~-d~s--------------~as~tgl~d~~~~~w~~~~l~~~gi~~~~---lP----~i~~~ 209 (245)
T PF00370_consen 152 KFLTLSDYLAYKLTGRAAT-DYS--------------NASRTGLYDIRTGQWDEELLEALGIPEEL---LP----EIVPP 209 (245)
T ss_dssp EEEEHHHHHHHHHHSC-EE-EHH--------------HHCTSSSEETTTTEE-HHHHHHTTSGGGG---SC----EEE-T
T ss_pred hcccHHHHHHhhccccccc-ccc--------------chhccccccccccccCHHHHHhhCCChhh---CC----cEecC
Confidence 9999999999999998752 333 25678899999999999999999999864 47 78899
Q ss_pred CCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcc
Q 007010 292 GHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVG 328 (621)
Q Consensus 292 g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg 328 (621)
|+++|+ +++++|+++||++|+||++|++|++|+++|
T Consensus 210 g~~~G~-~~~~~a~~~Gl~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 210 GEIIGT-LTPEAAKELGLPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp TSEEEE-EEHHHHHHHTSTTTEEEEEEEEHHHHHHHH
T ss_pred CCeeEE-ECHHHHHHhCCCCCCEEEEEchHHHHhhcC
Confidence 999997 999999999999999999999999999986
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-44 Score=368.87 Aligned_cols=490 Identities=17% Similarity=0.143 Sum_probs=365.0
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeecc----cc-CC-------CccccCHH-HHHHHHHHHHHHHHHHcCCC
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQI----WK-EG-------DCIEQSST-DIWHAICAAVDSACSLANVD 120 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~----~~-~~-------g~~eqd~~-~~~~~~~~~l~~~~~~~~~~ 120 (621)
...+||+|++|+.+|++++|.+++|++++...+.. +. .. |..-..|. +|.+++.-.+.++. +.+.+
T Consensus 8 ~~~fLG~DlSTQqlKaviids~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~-~~~~d 86 (545)
T KOG2531|consen 8 DRSFLGFDLSTQQLKAVIIDSNLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLR-EAGFD 86 (545)
T ss_pred CceeeeeecccceeEEEEEcCCccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHH-HcCCC
Confidence 34699999999999999999999999999887742 21 11 12223455 77777776666554 45677
Q ss_pred CCCEEEEEEcCC-CceEEecCCCCceeecCCC-----------CCCcceeEEcCcchHHHHHHHHccC---hhHHhhhCC
Q 007010 121 GEEVKGVGFAAT-CSLVAVDADGSPVSVSWNG-----------DSRRNIIVWMDHRAVKQAEKINSRN---SPVLQYCGG 185 (621)
Q Consensus 121 ~~~I~aIgis~~-~~~v~vD~~G~pl~~~~~~-----------~~~~p~i~W~D~Ra~~~~~~l~~~~---~~~~~~tG~ 185 (621)
..+|.+|+-++| ||.|+|.+.++-....++. ........|+|..+..+|+++.... .++.++||.
T Consensus 87 ~~kV~aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG~~~la~LTGS 166 (545)
T KOG2531|consen 87 LSKVMAISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGGAQELAKLTGS 166 (545)
T ss_pred HHHhhhhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhccHHHHHHhhcc
Confidence 789999999997 9999998775443333331 1234455899999999999998875 688999999
Q ss_pred CCCCCChHHHHHHHHHhcchhHHhhcceecchhHHhhhhccccccccccccccccccccchhhcccccccccCCCCCCCH
Q 007010 186 AVSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQMNEKGFRDMEACGWDD 265 (621)
Q Consensus 186 ~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l~~~dyl~~~LTG~~~~~~~s~~~~~~~~~~~~~~~as~t~l~D~~~~~Ws~ 265 (621)
+.+..|+.++|+-+.+.+||+|+++.+|-.+++|+...|-|..+..+.|+++ +..|+||++++||.
T Consensus 167 RAy~RFTGpQIrKi~~~~pe~Ye~TerISLVSsFlaSlllG~~a~id~sDgs--------------GMNL~dIr~k~ws~ 232 (545)
T KOG2531|consen 167 RAYERFTGPQIRKIYQQEPEAYEKTERISLVSSFLASLLLGSYAPIDESDGS--------------GMNLLDIRKKKWSK 232 (545)
T ss_pred hhhhhcccHHHHHHHHhChHhhhccceeehHHHHHHHHHhccccceeccccc--------------CchHHHHhhhhhhH
Confidence 9999999999999999999999999999999999999999998765666543 44689999999999
Q ss_pred HHHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCcEEEechhhhhhhcccccccCccchhhhhhhh
Q 007010 266 EFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTPVGTSLIDAHAGGVGVMESVPESVSEAKENEE 345 (621)
Q Consensus 266 ~ll~~~gi~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~pV~~g~~D~~aa~lg~~g~~~~g~~~~~~~~~ 345 (621)
++|+.+. +.+. .+++ ..+++-.++|+ |++.+.+++|++++|.|+.-.||.++++.|. ..++
T Consensus 233 ~~L~~~a--pdL~---~KL~-~pv~~~~~~G~-I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL--~l~~---------- 293 (545)
T KOG2531|consen 233 ALLDACA--PDLE---EKLG-KPVPPMSIAGT-ISKYFVKRYGFPPDCKVVPSTGDNPSSLAGL--PLRP---------- 293 (545)
T ss_pred HHHhhhC--hhHH---HHhC-CCCCccccccc-hhhhhHhhcCCCCCCEEEecCCCChHHhhCc--cccC----------
Confidence 9999985 2222 2333 35566788997 9999999999999999999999999999997 2433
Q ss_pred hhccceEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCH
Q 007010 346 EAICHRMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSL 425 (621)
Q Consensus 346 ~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~ 425 (621)
+++.+|+|||..++++++++.+.+.. ..|++.+.++.|+.+-+.-+|+.+=+-+|+.. ...+
T Consensus 294 ----~dl~iSLGTSdTv~m~t~~~~p~~eg-Hvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~-------------~~~s 355 (545)
T KOG2531|consen 294 ----GDLLISLGTSDTVFMVTKEYHPSPEG-HVFCHPTDPNHYMGMLCFKNGSLTRERIRNES-------------ANGS 355 (545)
T ss_pred ----CceEEEecCcceEEEEcCCCCCCCCc-ceeccCCCccceEEEEEecCChHHHHHHhhcc-------------cCCC
Confidence 58999999999999999988765543 34666677889999999989877655555431 2357
Q ss_pred HHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCC-------CCCCCceeE---EcCCCCCCHHHHHHHHHHHHH
Q 007010 426 FELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPI-------ADPKSKGII---CGMTLDSSEKQLALLYLATVQ 495 (621)
Q Consensus 426 ~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~-------~d~~arg~f---~Gl~~~~~~~~~~~~~rAvlE 495 (621)
|+.+++.+.+. |+|.+|.+=+-|--+|-.|. |+.+....- .++....+|+.- .||++|
T Consensus 356 Wd~Fne~L~~t---------~~gn~g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e---~rAlvE 423 (545)
T KOG2531|consen 356 WDKFNEILDST---------PSGNNGNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEVAKFSDPEIE---ARALVE 423 (545)
T ss_pred HHHHHHHhccC---------cCCCCCceeEecccccccCCCCccceEEEecCCccchhhcccccCCCchHH---HHHHHH
Confidence 88899877654 35666653222223555551 111110000 022233345554 469999
Q ss_pred HHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccC-C----HH
Q 007010 496 GIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYS-S----LI 570 (621)
Q Consensus 496 gia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~-s----~~ 570 (621)
|.++..|...+.|.-...+.++|+++||.++|....|++|||||+||+..+..+++++|+|+-|++|.-... . +.
T Consensus 424 gQ~L~~r~~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~ 503 (545)
T KOG2531|consen 424 GQFLSKRARAEPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFS 503 (545)
T ss_pred HhHhHhhhhhccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhccccccccce
Confidence 999999988887653234789999999999999999999999999999999999999999999999852211 0 00
Q ss_pred HHHH--Hh--hcCCcEEcCCCChhhHHHHHHHHHHHHHHHHHH
Q 007010 571 EAMK--AM--NAAGQVIHPSKDPKVKKYHDAKYLIFRELFEQQ 609 (621)
Q Consensus 571 ea~~--~~--~~~~~~~~P~~~~~~~~~y~~~y~~y~~l~~~~ 609 (621)
.-.. .. .+.+-.-+| +++..+.|..+.++|.++.+.+
T Consensus 504 ~~~~~~~~~p~~~~L~~~p--~~~~~e~Y~~ll~~~~e~e~~l 544 (545)
T KOG2531|consen 504 NKTNYLSLTPSKLELACEP--DSANWEIYGPLLKRLSELEDTL 544 (545)
T ss_pred eeccccccCCccceeeecC--CcchHHHHHHHHHHHHHHHHhh
Confidence 0000 00 112334578 7788889999999888877643
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.98 E-value=5.3e-32 Score=264.79 Aligned_cols=196 Identities=34% Similarity=0.557 Sum_probs=158.6
Q ss_pred EEEEecccceecceeCccccc-CCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010 352 MVLVCGTSTCHMAVSRNKLFI-PGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (621)
Q Consensus 352 ~~~~~GTs~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (621)
+++++|||+++..++++++.+ ++.+.++..+..++.|+++++.+++|.+++|+++.+...+.+... ...++.++
T Consensus 1 a~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~-----~~~~~~~~ 75 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVSSEPVISPPGFWNPFADHVIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDE-----EEIYEDLA 75 (198)
T ss_dssp EEEEESSSEEEEEEETSTTTTSSSSEEEEEEETSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSST-----THHHHHHH
T ss_pred CEEEehhhhHHhhEeCccccCCCeeEEeecCcCCCCeEEEeeccccccchhHHHHHhhccchhhhhh-----hhccchHH
Confidence 358999999999988888743 345554443446788999999999999999999986321111000 00122222
Q ss_pred HHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007010 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA 510 (621)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~ 510 (621)
...+.. .++++++++|+|+|.|+|+|+||++++|+|+|++.+|++.++ +||++||++|.+|++++.|++
T Consensus 76 ~~~~~~--------~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~---~rAv~Egia~~~~~~~~~l~~ 144 (198)
T PF02782_consen 76 ELEAAA--------SPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADL---ARAVLEGIAFSLRQILEELEE 144 (198)
T ss_dssp HHHHHH--------TSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhh--------ccCcccceeeeeccccCcccccccccccccccCCcccCHHHH---HHHHHHhHHHHHHHhhhhccc
Confidence 211111 125689999999999999999999999999999999998885 569999999999999999998
Q ss_pred C-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhc
Q 007010 511 H-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 563 (621)
Q Consensus 511 ~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~ 563 (621)
. +.++++|+++||+++|++|+|++||++|+||++++..|++++|||++|++++
T Consensus 145 ~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 145 LTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp HHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred cccccceeeEeccccccChHHHHHHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 7 8999999999999999999999999999999999999999999999999874
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.54 E-value=1.3e-07 Score=95.83 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC-EEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHHH
Q 007010 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAI 557 (621)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA~ 557 (621)
..++++++ +++++++++.+...+..+ +++ .|+++||+++|+.|.+.+++.++.||.+++.++ .+|+|||+
T Consensus 176 g~~~~di~---~~~~~~va~~i~~~~~~~-----~~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 176 GVKKEDIL---AGVYESIAERVAEMLQRL-----KIEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred CCCHHHHH---HHHHHHHHHHHHHHHhhc-----CCCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHh
Confidence 34566754 599999999999866432 344 799999999999999999999999999999875 88999997
Q ss_pred H
Q 007010 558 L 558 (621)
Q Consensus 558 l 558 (621)
+
T Consensus 248 ~ 248 (248)
T TIGR00241 248 L 248 (248)
T ss_pred C
Confidence 4
No 25
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.43 E-value=2.7e-06 Score=89.15 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh-----CCceeeccCCC-chh
Q 007010 479 LDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-----GCPIILPRENE-SVL 552 (621)
Q Consensus 479 ~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl-----g~pV~~~~~~e-~~a 552 (621)
....++|++. ++..+++-.+... +.+.+..-+.|.++||.++|+.+.+.+.+.+ +.+|.+++.++ ..|
T Consensus 352 ~G~~reDIaA---GL~~SIA~Rv~s~---l~r~~~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GA 425 (432)
T TIGR02259 352 LGDKREDILA---GLHRAIILRAISI---ISRSGGITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGA 425 (432)
T ss_pred CCCCHHHHHH---HHHHHHHHHHHHH---HhcccCCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHH
Confidence 4446778654 8888887554444 3333222356999999999999999999999 57888887654 779
Q ss_pred HHHHHHH
Q 007010 553 LGAAILG 559 (621)
Q Consensus 553 lGAA~lA 559 (621)
+|||+.|
T Consensus 426 LGAAL~a 432 (432)
T TIGR02259 426 LGASEFA 432 (432)
T ss_pred HHHHHhC
Confidence 9999875
No 26
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.05 E-value=8.4e-06 Score=82.68 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=58.2
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-Cc
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CS 134 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~ 134 (621)
|+||||+|||++|++++| +|+++...+. ||+.||+.+.+++++++++.+.+..+|.+|++|++ ++
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~il~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~~i~~i~~Tg~~~~ 66 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGKVIGYKWL-------------DTTPVIEETARAILEALKEAGIGLEPIDKIVATGYGRH 66 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCEEEEEEEe-------------cCCCCHHHHHHHHHHHHHHcCCChhheeEEEEECCCcc
Confidence 579999999999999999 8998887654 45568899999999999888777789999999998 77
Q ss_pred eEE
Q 007010 135 LVA 137 (621)
Q Consensus 135 ~v~ 137 (621)
+|+
T Consensus 67 ~v~ 69 (248)
T TIGR00241 67 KVG 69 (248)
T ss_pred ccc
Confidence 654
No 27
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.00026 Score=74.38 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=60.2
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (621)
+.+++|||||.|++|++++|.+|+++...+.+++. ..+.+.+.+.+.+.+++++++.+ ...++.+||+ .
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~-------~~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIgi---~ 73 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPT-------PDPEEAILEAILALVAELLKQAQ-GRVAIIGIGI---P 73 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCC-------CCchhHHHHHHHHHHHHHHHhcC-CcCceEEEEe---c
Confidence 35899999999999999999999999999998872 23335888889999999887654 3456777877 4
Q ss_pred ceEEecCCC
Q 007010 134 SLVAVDADG 142 (621)
Q Consensus 134 ~~v~vD~~G 142 (621)
+...+|...
T Consensus 74 ~pg~~~~~~ 82 (314)
T COG1940 74 GPGDVDNGT 82 (314)
T ss_pred cceeccCCc
Confidence 444555443
No 28
>PRK13317 pantothenate kinase; Provisional
Probab=97.62 E-value=0.0017 Score=66.79 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCCCCCCCCCCceeEEc-----CCCCCCHHHHHHHHHHHHHHH
Q 007010 423 VSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNRSPIADPKSKGIICG-----MTLDSSEKQLALLYLATVQGI 497 (621)
Q Consensus 423 ~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger~P~~d~~arg~f~G-----l~~~~~~~~~~~~~rAvlEgi 497 (621)
...+++|.+++.+-.. ..-+ +.+-.+.|...+....+.+.+.|+ ++....++|+++ +++..+
T Consensus 140 ~~~~~el~~la~~g~~---------~~~D-l~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~~eDIaa---sl~~~v 206 (277)
T PRK13317 140 ISDYEQLIELAKHGDR---------NNID-LKVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFTSSDILA---GVIGLV 206 (277)
T ss_pred CCCHHHHHHHHhcCCC---------cccc-ceeccccCCCCCCCCCceeEehhhhhhhhhccCCCHHHHHH---HHHHHH
Confidence 4567888877754210 0111 223344433222234556666655 334456888765 999988
Q ss_pred HHHHHHHHHHHHhCCCCcCEEEEec-CCCCCHHHHHHHHHhh---CCceeeccCC-CchhHHHHHHHH
Q 007010 498 AYGTRHIVEHCNAHGHKIDTLLACG-GLAKNPLFLQQHADII---GCPIILPREN-ESVLLGAAILGA 560 (621)
Q Consensus 498 a~~~r~~l~~l~~~g~~~~~I~~~G-Gga~s~~w~Qi~Advl---g~pV~~~~~~-e~~alGAA~lA~ 560 (621)
+..+..+.-.+.+. ..+++|+++| |.++|+.+++.+++.+ +..+..++++ -.+|+|||+.|.
T Consensus 207 ~~~I~~lA~~~ar~-~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 207 GEVITTLSIQAARE-KNIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred HHHHHHHHHHHHHh-cCCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 87776664333332 3457899999 6899999999999999 7888888755 478999998864
No 29
>PRK09698 D-allose kinase; Provisional
Probab=97.37 E-value=0.0014 Score=68.49 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=54.8
Q ss_pred CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (621)
.+++|||+|.|++|++++|.+|+++.+.+.+++. ..+++. .+.+.+.+++++++.+ .+|.+|||+. .+
T Consensus 4 ~~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~~-------~~~~~~-~~~l~~~i~~~~~~~~---~~i~gigia~-pG 71 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDAEGEILHCEKKRTAE-------VIAPDL-VSGLGEMIDEYLRRFN---ARCHGIVMGF-PA 71 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcCCCCEEEEEEeCCcc-------ccchHH-HHHHHHHHHHHHHHcC---CCeeEEEEeC-Cc
Confidence 6899999999999999999999999887776641 123343 7777788888877643 5789999833 34
Q ss_pred eEEecCC
Q 007010 135 LVAVDAD 141 (621)
Q Consensus 135 ~v~vD~~ 141 (621)
++|.+
T Consensus 72 --~vd~~ 76 (302)
T PRK09698 72 --LVSKD 76 (302)
T ss_pred --ceeCC
Confidence 45665
No 30
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.30 E-value=0.0013 Score=69.09 Aligned_cols=86 Identities=27% Similarity=0.444 Sum_probs=64.8
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCceEE
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVA 137 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~ 137 (621)
||||+|.|++|++++|.+|+++.....+.+ .+++++.+.+.+.+++++++.+....+|.+|||+ ..| +
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva-~pG--~ 68 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWKVPTD---------TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIG-APG--P 68 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEEeCCC---------CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEe-ccc--c
Confidence 699999999999999999999887666543 3678899999999999988776666789999993 344 3
Q ss_pred ecCC-CCceeecCCCCCCcceeEEcCc
Q 007010 138 VDAD-GSPVSVSWNGDSRRNIIVWMDH 163 (621)
Q Consensus 138 vD~~-G~pl~~~~~~~~~~p~i~W~D~ 163 (621)
+|.+ |.... .|.+-|.+-
T Consensus 69 vd~~~g~~~~--------~~~~~w~~~ 87 (318)
T TIGR00744 69 VNRQRGTVYF--------AVNLDWKQE 87 (318)
T ss_pred ccCCCCEEEe--------cCCCCCCCC
Confidence 4654 55332 344557654
No 31
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.19 E-value=0.0021 Score=65.47 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=52.1
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (621)
++||||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+++++..... ..+.+|||+ ..+
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~-~pG- 66 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQRIWHKRVPTP--------REDYPQLLQILRDLTEEADTYC----GVQGSVGIG-IPG- 66 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCCceEEEE-ecC-
Confidence 47999999999999999999999988777664 2467778888777777664321 234467763 244
Q ss_pred EEecCC-CC
Q 007010 136 VAVDAD-GS 143 (621)
Q Consensus 136 v~vD~~-G~ 143 (621)
++|.+ |.
T Consensus 67 -~vd~~~g~ 74 (256)
T PRK13311 67 -LPNADDGT 74 (256)
T ss_pred -cEECCCCE
Confidence 34665 44
No 32
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.13 E-value=0.0014 Score=67.26 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCcee-eccC-CCchhHHHHH
Q 007010 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPII-LPRE-NESVLLGAAI 557 (621)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~-~~~~-~e~~alGAA~ 557 (621)
...++|++. ++.++++-.+ ...+++.++ -+.|.++||.++|+.+.+.+.+.|+++|. .+.. .-..|+|||+
T Consensus 212 G~~~edI~a---Gl~~sia~rv---~~~~~~~~i-~~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL 284 (293)
T TIGR03192 212 GYTKNMVIA---AYCQAMAERV---VSLLERIGV-EEGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAAL 284 (293)
T ss_pred CCCHHHHHH---HHHHHHHHHH---HHHhcccCC-CCCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHH
Confidence 335677654 8888888544 444444332 24599999999999999999999999998 4543 4578999999
Q ss_pred HHHh
Q 007010 558 LGAV 561 (621)
Q Consensus 558 lA~~ 561 (621)
+|..
T Consensus 285 ~A~~ 288 (293)
T TIGR03192 285 FGYT 288 (293)
T ss_pred HHHH
Confidence 9853
No 33
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.11 E-value=0.0018 Score=69.09 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHHHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILG 559 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA~lA 559 (621)
..++|++. ++..+++-.+.. ..+++.+. -+.|.++||.++|+.+...+.+.+|.+|.+++.++ ..|+|||++|
T Consensus 328 ~~~eDIaA---Gl~~SIa~rv~~--~l~~~~~i-~~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 328 ASPEDVAA---AACHSVAEQVYE--QQLQEIDV-REPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred CCHHHHHH---HHHHHHHHHHHH--HHhhcCCC-CCcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 45788765 888888855543 12333322 23499999999999999999999999999998666 7799999987
No 34
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=97.08 E-value=0.00056 Score=65.51 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=63.8
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-CceE
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-CSLV 136 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~~~v 136 (621)
||||+|+|.+-++++|.+.+++...+.++. |++....+.++++++++..+.++.+|..|.++++ ..-.
T Consensus 2 igIDvGGT~TD~v~~d~~~~~~~~~K~~Tt-----------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~~tNA 70 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTGVVATAKVPTT-----------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTVATNA 70 (176)
T ss_pred eeEecCCCcEEEEEEeCCCCEEEEEEeCCC-----------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHHHHHH
Confidence 799999999999999988788888888763 4566788889999998887777899999999886 5556
Q ss_pred EecCCCCce
Q 007010 137 AVDADGSPV 145 (621)
Q Consensus 137 ~vD~~G~pl 145 (621)
++.++|.++
T Consensus 71 l~e~~g~~v 79 (176)
T PF05378_consen 71 LLERKGARV 79 (176)
T ss_pred HHhccCCCc
Confidence 677777665
No 35
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0016 Score=66.37 Aligned_cols=71 Identities=30% Similarity=0.346 Sum_probs=56.5
Q ss_pred CCCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCH-HHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 53 SRSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSS-TDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~-~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
+|+|+||||-|+|++++++.|.+|+++......=.. ...++ ++-+..+.+++++++.+++.++++|..+.+
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~~g~vlg~g~sGpAN------~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~a 74 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADEDGNVLGRGKSGPAN------IQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIVA 74 (301)
T ss_pred CccEEEEEccCCcceEEEEEcCCCcEEEEeccCCce------ecccchHHHHHHHHHHHHHHHHhcCCCHHHhCceee
Confidence 457999999999999999999999999887543211 23355 788899999999999888888887765543
No 36
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.04 E-value=0.0022 Score=61.34 Aligned_cols=87 Identities=24% Similarity=0.385 Sum_probs=65.7
Q ss_pred EEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCceEEe
Q 007010 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSLVAV 138 (621)
Q Consensus 59 gIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~v~v 138 (621)
|||+|+++++++++|.+|+++.+.+.+++ .+++++.+.+.+.++++..+.+. . +|||+ ..+ ++
T Consensus 1 gidig~~~i~~~l~d~~g~ii~~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~~----~-gIgi~-~pG--~v 63 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGEIIYSESIPTP---------TSPEELLDALAELIERLLADYGR----S-GIGIS-VPG--IV 63 (179)
T ss_dssp EEEEESSEEEEEEEETTSCEEEEEEEEHH---------SSHHHHHHHHHHHHHHHHHHHTC----E-EEEEE-ESS--EE
T ss_pred CEEECCCEEEEEEECCCCCEEEEEEEECC---------CCHHHHHHHHHHHHHHHHhhccc----c-cEEEe-ccc--cC
Confidence 79999999999999999999998887764 58899999999999999887642 2 77773 244 46
Q ss_pred cCC-CCceeecCCCCCCcceeEEcCcchHHHHH
Q 007010 139 DAD-GSPVSVSWNGDSRRNIIVWMDHRAVKQAE 170 (621)
Q Consensus 139 D~~-G~pl~~~~~~~~~~p~i~W~D~Ra~~~~~ 170 (621)
|.+ |..+. .|...|.+-.-.+..+
T Consensus 64 ~~~~g~i~~--------~~~~~~~~~~l~~~l~ 88 (179)
T PF00480_consen 64 DSEKGRIIS--------SPNPGWENIPLKEELE 88 (179)
T ss_dssp ETTTTEEEE--------CSSGTGTTCEHHHHHH
T ss_pred cCCCCeEEe--------cCCCCcccCCHHHHhh
Confidence 666 45553 5667788865544443
No 37
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.02 E-value=0.00083 Score=57.59 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=26.5
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeee
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~ 86 (621)
+||||+|+|.+|++++|.+|+++.....+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~ 32 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIP 32 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEE
Confidence 799999999999999999999887666554
No 38
>PRK09557 fructokinase; Reviewed
Probab=96.94 E-value=0.0049 Score=64.28 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=55.1
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (621)
++||||+|.|++|++++|.+|+++...+.+++ .++++++.+.+.+.++++.... ..+.+|||+. .+
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~-pG- 66 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGEELFRKRLPTP--------RDDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI-PG- 66 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCCEEEEEEecCC--------CCCHHHHHHHHHHHHHHHHhhc----CCceEEEecC-cc-
Confidence 47999999999999999999999888776654 2467788888888887776542 3457788833 44
Q ss_pred EEecCC-CCce
Q 007010 136 VAVDAD-GSPV 145 (621)
Q Consensus 136 v~vD~~-G~pl 145 (621)
++|.+ |..+
T Consensus 67 -~vd~~~g~i~ 76 (301)
T PRK09557 67 -SISPYTGLVK 76 (301)
T ss_pred -cCcCCCCeEE
Confidence 45654 5544
No 39
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.94 E-value=0.0032 Score=63.68 Aligned_cols=74 Identities=22% Similarity=0.188 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC-Cc----eeeccC-CCchhH
Q 007010 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CP----IILPRE-NESVLL 553 (621)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg-~p----V~~~~~-~e~~al 553 (621)
...++|++. ++..+++-.+. ..+++.+...++|.++||.++|+.+.+.+.+.|+ .+ |.+++. .-..|+
T Consensus 183 G~~~edI~a---Gl~~sia~r~~---~~~~~~~~~~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAl 256 (262)
T TIGR02261 183 GISAPNILK---GIHESMADRLA---KLLKSLGALDGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAI 256 (262)
T ss_pred CCCHHHHHH---HHHHHHHHHHH---HHHhccCCCCCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHH
Confidence 345677654 88888886443 3444444334569999999999999999999884 23 333333 346799
Q ss_pred HHHHHH
Q 007010 554 GAAILG 559 (621)
Q Consensus 554 GAA~lA 559 (621)
|||++|
T Consensus 257 GAAl~~ 262 (262)
T TIGR02261 257 GAALWG 262 (262)
T ss_pred HHHHcC
Confidence 999874
No 40
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.91 E-value=0.0034 Score=64.40 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=44.3
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
+++|||+|+|++|++|+| +++++.....++. .+|. +...+++++++++.+....+|..+++|+
T Consensus 33 ~~~GIDiGStt~K~Vlld-~~~i~~~~~~~tg---------~~~~---~~a~~~l~~~l~~~g~~~~~v~~~~~TG 95 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVC-DGELYGYNSMRTG---------NNSP---DSAKNALQGIMDKIGMKLEDINYVVGTG 95 (293)
T ss_pred EEEEEEeCchhEEEEEEe-CCEEEEEEeecCC---------CCHH---HHHHHHHHHHHHHcCCcccceEEEEEEC
Confidence 899999999999999999 4566665554432 2332 3456677777777776556777777654
No 41
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.90 E-value=0.0028 Score=73.26 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA 556 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA 556 (621)
-+|.++..++..+++-+.-.+++.+ ++.+. .++.|+++||+++.|.+.+++.++||.++.. ....|+.|+|||
T Consensus 295 itR~~FE~l~~~l~~r~~~~i~~~L---~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAA 371 (668)
T PRK13410 295 LDRKQFESLCGDLLDRLLRPVKRAL---KDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAA 371 (668)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHH---HHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHH
Confidence 3566665555555555443333333 33443 5789999999999999999999999986654 346779999999
Q ss_pred HHHHhhcccc
Q 007010 557 ILGAVAAKRY 566 (621)
Q Consensus 557 ~lA~~a~G~~ 566 (621)
+.|+...+..
T Consensus 372 i~aa~ls~~~ 381 (668)
T PRK13410 372 IQAGILAGEL 381 (668)
T ss_pred HHHHhhcccc
Confidence 9999876643
No 42
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.89 E-value=0.0052 Score=64.12 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=53.2
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCce
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCSL 135 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~~ 135 (621)
+++|||+|.|++|++++|.+|+++.+.+.+++ ..+++++.+.+.+.++++.... ..+.+|||+. .|
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~i~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~----~~~~~igia~-pG- 66 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLELQWEERVPTP--------RDSYDAFLDAVCELVAEADQRF----GCKGSVGIGI-PG- 66 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCcEEEEEEecCC--------CcCHHHHHHHHHHHHHHHHhhc----CCcceEEEeC-CC-
Confidence 36999999999999999999999988776654 2467888888888888775432 2344677732 44
Q ss_pred EEecCC-CCc
Q 007010 136 VAVDAD-GSP 144 (621)
Q Consensus 136 v~vD~~-G~p 144 (621)
++|.+ |..
T Consensus 67 -~vd~~~g~~ 75 (303)
T PRK13310 67 -MPETEDGTL 75 (303)
T ss_pred -cccCCCCEE
Confidence 34654 543
No 43
>CHL00094 dnaK heat shock protein 70
Probab=96.82 E-value=0.0034 Score=72.20 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=46.4
Q ss_pred CcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHHHHhhccccC
Q 007010 514 KIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGAVAAKRYS 567 (621)
Q Consensus 514 ~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~lA~~a~G~~~ 567 (621)
.++.|+++||+++.|.+.++++++||.++... ...|+.|+|||+.|+...|.++
T Consensus 328 ~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~ 382 (621)
T CHL00094 328 DIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVK 382 (621)
T ss_pred hCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCcc
Confidence 67899999999999999999999999877554 3567899999999998777543
No 44
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.79 E-value=0.0029 Score=65.01 Aligned_cols=67 Identities=24% Similarity=0.335 Sum_probs=52.3
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
||||.|+|++|++++|.+|+++.+....-.. ....+.++..+.+.+++.+++++.+.+..+|..+.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~il~~~~~~~~n-----~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~ 67 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGNILGRGKGGGAN-----YNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICI 67 (271)
T ss_dssp EEEEECSSEEEEEEEETTSEEEEEEEES-TT-----HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CEEeeChheeeeEEEeCCCCEEEEEEeCCCC-----CCCCCcchhhhHHHHHHHHHHHHcCCCccccceeee
Confidence 7999999999999999999988776543221 112456788889999999999998887777776654
No 45
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.59 E-value=0.0067 Score=63.38 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCcCE-EEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHH
Q 007010 480 DSSEKQLALLYLATVQGIAYGTRHIVE-HCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAA 556 (621)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~l~-~l~~~g~~~~~-I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA 556 (621)
-.+++|+.- ++.++++-+ .+. .+++ ++++. |++.||.+.|..+...+.|.+|++|.+|+.++ ..|+|||
T Consensus 314 G~~~EdI~A---Gl~~Sv~~~---v~~~~~~~--~~i~~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAA 385 (396)
T COG1924 314 GASPEDILA---GLAYSVAEN---VAEKVIKR--VDIEEPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAA 385 (396)
T ss_pred CCCHHHHHH---HHHHHHHHH---HHHHHhhc--cCCCCCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHH
Confidence 345666543 566665533 334 3333 33433 99999999999999999999999999998654 7799999
Q ss_pred HHHH
Q 007010 557 ILGA 560 (621)
Q Consensus 557 ~lA~ 560 (621)
++|.
T Consensus 386 L~a~ 389 (396)
T COG1924 386 LIAK 389 (396)
T ss_pred HHHh
Confidence 9875
No 46
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.57 E-value=0.0074 Score=69.57 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcCEEEEecCCCCCHHHHHHHHHhhCC-ceeeccCCCchhHHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAA 556 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g---~~~~~I~~~GGga~s~~w~Qi~Advlg~-pV~~~~~~e~~alGAA 556 (621)
-+|.++..+...+++-+.-.+++.+ ++.+ ..++.|+++||.++.|.+.+++.+.||. |+......|+.|+|||
T Consensus 320 ItR~efe~l~~~l~~r~~~~v~~~L---~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAA 396 (657)
T PTZ00186 320 ISRSKFEGITQRLIERSIAPCKQCM---KDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAA 396 (657)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHH---HHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHH
Confidence 3677776666666666554444443 3333 3678999999999999999999999997 4455557789999999
Q ss_pred HHHHhhcc
Q 007010 557 ILGAVAAK 564 (621)
Q Consensus 557 ~lA~~a~G 564 (621)
+.|+.-.+
T Consensus 397 i~a~~l~~ 404 (657)
T PTZ00186 397 TLGGVLRG 404 (657)
T ss_pred HHHHHhcc
Confidence 99986554
No 47
>PRK13318 pantothenate kinase; Reviewed
Probab=96.48 E-value=0.009 Score=60.93 Aligned_cols=62 Identities=21% Similarity=0.406 Sum_probs=43.3
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis 130 (621)
+|+||+|.|++|.+++| +|+++...+.+++ ....++++. +.++++++..+.+..+|.+|+++
T Consensus 2 iL~IDIGnT~iK~al~d-~g~i~~~~~~~t~-------~~~~~~~~~----~~l~~l~~~~~~~~~~i~~I~is 63 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GGKLVAHWRISTD-------SRRTADEYG----VWLKQLLGLSGLDPEDITGIIIS 63 (258)
T ss_pred EEEEEECCCcEEEEEEE-CCEEEEEEEEeCC-------CCCCHHHHH----HHHHHHHHHcCCCcccCceEEEE
Confidence 68999999999999999 6888877666654 123344544 34455555544444678999994
No 48
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=96.48 E-value=0.0084 Score=69.14 Aligned_cols=86 Identities=20% Similarity=0.229 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHH
Q 007010 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAIL 558 (621)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~l 558 (621)
.-+|.++-.+...+++-+.-.+++.++...-....++.|+++||+++.|.+.+++.+.||.++... ...++.|+|||+.
T Consensus 292 ~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~ 371 (627)
T PRK00290 292 KLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQ 371 (627)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHH
Confidence 346777766556666655444444433221112357899999999999999999999999887543 4677889999999
Q ss_pred HHhhccc
Q 007010 559 GAVAAKR 565 (621)
Q Consensus 559 A~~a~G~ 565 (621)
|+.-.|.
T Consensus 372 aa~l~~~ 378 (627)
T PRK00290 372 GGVLAGD 378 (627)
T ss_pred HHHhcCC
Confidence 9876553
No 49
>PRK13321 pantothenate kinase; Reviewed
Probab=96.46 E-value=0.0076 Score=61.39 Aligned_cols=62 Identities=26% Similarity=0.423 Sum_probs=43.1
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis 130 (621)
+|+||+|.|++|.+++|.+ +++...+.+++ ...+++++...+.+.++ +.+.+.++|.+|+++
T Consensus 2 iL~IDIGnT~ik~gl~~~~-~i~~~~~~~T~-------~~~~~~~~~~~l~~l~~----~~~~~~~~i~~i~vs 63 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD-RLLRSFRLPTD-------KSRTSDELGILLLSLFR----HAGLDPEDIRAVVIS 63 (256)
T ss_pred EEEEEECCCeEEEEEEECC-EEEEEEEEecC-------CCCCHHHHHHHHHHHHH----HcCCChhhCCeEEEE
Confidence 6899999999999999944 77776666554 23455666665555554 334445578899984
No 50
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.45 E-value=0.0058 Score=65.97 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=53.9
Q ss_pred eEEEEecCccceeeEEEc-CCCCEEEEEEeeecccc-CCC------ccc------cCHHHHHHHHHHHHHHHHHHcCCCC
Q 007010 56 VFLGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWK-EGD------CIE------QSSTDIWHAICAAVDSACSLANVDG 121 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~-~~g------~~e------qd~~~~~~~~~~~l~~~~~~~~~~~ 121 (621)
|-++||||||.+.+.++| .+|+++++.+...|... ..+ ++. +=-..+.+.+.+.+.+++++.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 678999999999999999 58999999988877542 111 122 2223345566666666777778999
Q ss_pred CCEEEEEEcC-C-CceEEecCC
Q 007010 122 EEVKGVGFAA-T-CSLVAVDAD 141 (621)
Q Consensus 122 ~~I~aIgis~-~-~~~v~vD~~ 141 (621)
++|..|.|++ + +..++++-+
T Consensus 82 ~~I~~i~i~GNt~M~hLllGl~ 103 (412)
T PF14574_consen 82 EDIYEIVIVGNTTMLHLLLGLD 103 (412)
T ss_dssp GGEEEEEEEE-HHHHHHHHT--
T ss_pred HHeEEEEEEecHHHHHHHcCCC
Confidence 9999999976 3 333444433
No 51
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.40 E-value=0.0074 Score=60.82 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCC-CchhHHHHH
Q 007010 486 LALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAI 557 (621)
Q Consensus 486 ~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~-e~~alGAA~ 557 (621)
+..+....++.+.-.+++.++ + .+++.|+++||+|+.+.+.+.+.+.||.||..+.++ +++|+|+|+
T Consensus 171 ~~~~i~~~~~~i~~~i~~~l~---~--~~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 171 IFPVVKPVYQKMASIVKRHIE---G--QGVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---h--CCCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 333455666666666665554 2 356799999999999999999999999999887754 588999986
No 52
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.39 E-value=0.011 Score=60.53 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCC-CchhHHHHHH
Q 007010 484 KQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAAIL 558 (621)
Q Consensus 484 ~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~-e~~alGAA~l 558 (621)
.++..+.+..+|-+.-.+++.++. .+++.|+++||+|+.+.+.+++++.||.||+++..+ ..+++|+|+.
T Consensus 196 ~~~~~ii~~~~~~i~~~i~~~l~~-----~~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 196 KEIFPVVKPVVEKMASIVARHIEG-----QDVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALS 266 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----CCCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhh
Confidence 344445556666665555554442 367899999999999999999999999999998766 5889999975
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.34 E-value=0.013 Score=62.72 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=11.3
Q ss_pred EEcccccchhHHHHHHHHhh
Q 007010 389 LTEGGQSATGALLDYIIENH 408 (621)
Q Consensus 389 ~~~~~~~~~G~~l~Wl~~~~ 408 (621)
+..-|...+|..|+-+.+.+
T Consensus 268 MNdkCAAGTGrFLE~~A~~L 287 (404)
T TIGR03286 268 MGGICAGASGRFLEMTAKRL 287 (404)
T ss_pred EcCcccccCcHHHHHHHHHh
Confidence 33445556777776555443
No 54
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=96.28 E-value=0.013 Score=67.15 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHH
Q 007010 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAIL 558 (621)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~l 558 (621)
.-++.++..+..-+++-+.-.++..++...-....++.|+++||+++.|...+++.+.|+.++... ...++.|+|||+.
T Consensus 278 ~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~ 357 (599)
T TIGR01991 278 KLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQ 357 (599)
T ss_pred EEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHH
Confidence 336777776666666666544444443221112357899999999999999999999999766543 4678889999999
Q ss_pred HHhhcc
Q 007010 559 GAVAAK 564 (621)
Q Consensus 559 A~~a~G 564 (621)
|+.-.+
T Consensus 358 a~~l~~ 363 (599)
T TIGR01991 358 ADLLAG 363 (599)
T ss_pred HHHhcc
Confidence 987543
No 55
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=96.26 E-value=0.014 Score=67.17 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA 556 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA 556 (621)
-++.++..+..-+++-+.-.++..+ ++.+. .++.|+++||+++.|...+++++.||.++.. ....++.|+|||
T Consensus 295 itr~efe~l~~~l~~~~~~~i~~~L---~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAA 371 (616)
T PRK05183 295 ITREQFNALIAPLVKRTLLACRRAL---RDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAA 371 (616)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHH
Confidence 3567776555566665544444333 33333 5789999999999999999999999976644 346778899999
Q ss_pred HHHHhhcc
Q 007010 557 ILGAVAAK 564 (621)
Q Consensus 557 ~lA~~a~G 564 (621)
+.|+.-.+
T Consensus 372 i~a~~l~~ 379 (616)
T PRK05183 372 IQADILAG 379 (616)
T ss_pred HHHHHhcc
Confidence 99986544
No 56
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=96.24 E-value=0.012 Score=67.54 Aligned_cols=81 Identities=23% Similarity=0.298 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAI 557 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~ 557 (621)
+|.++-.++.-+++.+.-.+++.+ ++.+. .++.|+++||.++.|.+.+++.+.||.++... ...++.|+|||+
T Consensus 292 tr~~fe~l~~~l~~~~~~~i~~~l---~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~ 368 (595)
T TIGR02350 292 TRAKFEELTADLVERTKEPVRQAL---KDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAI 368 (595)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHH
Confidence 577776555555555544344333 33333 57899999999999999999999999877653 456788999999
Q ss_pred HHHhhccc
Q 007010 558 LGAVAAKR 565 (621)
Q Consensus 558 lA~~a~G~ 565 (621)
.|+.-.+.
T Consensus 369 ~aa~l~~~ 376 (595)
T TIGR02350 369 QGGVLKGD 376 (595)
T ss_pred HHHHhcCC
Confidence 99875543
No 57
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.20 E-value=0.017 Score=66.03 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILG 559 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~lA 559 (621)
-++.++-.+.+-+++-+.-.++..++... ...++.|+++||.++.|...+++.+.||.++... +..++.|+|||+.|
T Consensus 277 itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a 354 (595)
T PRK01433 277 INKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQA 354 (595)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHH
Confidence 35777766566666665544444444322 2468999999999999999999999999887654 46678899999999
Q ss_pred Hhh
Q 007010 560 AVA 562 (621)
Q Consensus 560 ~~a 562 (621)
+.-
T Consensus 355 ~~l 357 (595)
T PRK01433 355 ENL 357 (595)
T ss_pred HHh
Confidence 874
No 58
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.17 E-value=0.015 Score=58.86 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=44.4
Q ss_pred eEEEEecCccceeeEEEcCCCCE-EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKL-LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~v-v~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
+++|||+|+|++|++++|.+++. .......++.. ..+| .+...+++++++++.+....+|..|+.|+-
T Consensus 2 ~~~GIDiGStttK~Vlid~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~~TGY 70 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDGDKEECLAKRNDRIR------QRDP---FKLAEDAYDDLLEEAGLAAADVAYCATTGE 70 (262)
T ss_pred eEEEEEcCcccEEEEEEecCCCeeEEEEEEEecCC------CCCH---HHHHHHHHHHHHHHcCCChhheEEEEEECC
Confidence 68999999999999999965542 22222222210 1233 234567777887777766678888887553
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.15 E-value=0.018 Score=60.24 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=12.0
Q ss_pred EEcccccchhHHHHHHHHhh
Q 007010 389 LTEGGQSATGALLDYIIENH 408 (621)
Q Consensus 389 ~~~~~~~~~G~~l~Wl~~~~ 408 (621)
+.+.|...+|+.|+-+.+.+
T Consensus 256 mN~~CAAGtGrFLE~~A~~L 275 (396)
T COG1924 256 MNDKCAAGTGRFLEVIARRL 275 (396)
T ss_pred eccccccccchHHHHHHHHh
Confidence 34456666777776665544
No 60
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=96.09 E-value=0.011 Score=67.81 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec-cCCCchhHHHHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP-RENESVLLGAAILGA 560 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~-~~~e~~alGAA~lA~ 560 (621)
+|.++-.+..-+++.+.-.++.+++.......+++.|.++||+++.|.+.+++.+.|+.++... +..++.|+|||+.|+
T Consensus 296 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 296 TREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHH
T ss_pred ccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchh
Confidence 5677665555566555544444443221112357899999999999999999999999877654 356788999999998
Q ss_pred hhcc
Q 007010 561 VAAK 564 (621)
Q Consensus 561 ~a~G 564 (621)
.-.+
T Consensus 376 ~~~~ 379 (602)
T PF00012_consen 376 ILSG 379 (602)
T ss_dssp HHHT
T ss_pred hhcc
Confidence 6555
No 61
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.97 E-value=0.27 Score=50.52 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHhhhhhcCCCCccCCCCCeEEccccCCCC--CCCCCCCCceeEEc-C-----CCCCCHHHHHHHHHHH
Q 007010 422 HVSLFELLNGTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICG-M-----TLDSSEKQLALLYLAT 493 (621)
Q Consensus 422 ~~~~~~~l~~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger--~P~~d~~arg~f~G-l-----~~~~~~~~~~~~~rAv 493 (621)
+...|+++.+++++-.. ..-+ +.+..+.|.. .+--+.+.-++-+| + +....++|+++ ++
T Consensus 144 ~~~~~~el~~lA~~G~~---------~~vD-l~V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~~~~~eDiAa---SL 210 (279)
T TIGR00555 144 GIQTFDELLEMAQHGDR---------TNVD-LLVGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQSFSPEDIAA---SL 210 (279)
T ss_pred CCCCHHHHHHHHHcCCC---------cccc-cccccccCCCCCCCCCCcceeeeccchhhccccccCCCHHHHHH---HH
Confidence 34568888887764211 0111 2234444421 11224556677777 3 23456899775 99
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CCCCHHHHHHHHHhhC---CceeeccC-CCchhHHHHH
Q 007010 494 VQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG---CPIILPRE-NESVLLGAAI 557 (621)
Q Consensus 494 lEgia~~~r~~l~~l~~~g~~~~~I~~~GG-ga~s~~w~Qi~Advlg---~pV~~~~~-~e~~alGAA~ 557 (621)
+..|+..+-.+.- +.......++|+..|| ...++..++.++..++ ..+..+++ .-.+|+|||+
T Consensus 211 l~mV~~nIg~lA~-~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 211 LGLIGNNIGQIAY-LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHH-HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 9999987665533 3222245788999999 6789999999999876 44556664 4477899985
No 62
>PRK00292 glk glucokinase; Provisional
Probab=95.97 E-value=0.029 Score=58.97 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCeEEEEecCccceeeEEEc-CCCCEEEEEEeee
Q 007010 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSPI 86 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~ 86 (621)
|+++||||||+|++|++++| .+++++...+.++
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~ 34 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWANGEIEQIKTYAT 34 (316)
T ss_pred CceEEEEEcCccceEEEEEecCCCceeeeEEEec
Confidence 35899999999999999999 4666666655554
No 63
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=95.86 E-value=0.019 Score=60.89 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CCcC-EEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HG-HKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 557 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g-~~~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~ 557 (621)
+++++.++....++.+.-.+++.++.... .. -.++ .|+++||+|+-|.+.+++++.|+.||.+.. ..++.|+|||+
T Consensus 240 ~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~ 319 (336)
T PRK13928 240 TSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGK 319 (336)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 46676666667777777666666654421 11 1244 699999999999999999999999998876 55688999999
Q ss_pred HHHh
Q 007010 558 LGAV 561 (621)
Q Consensus 558 lA~~ 561 (621)
.+..
T Consensus 320 ~~~~ 323 (336)
T PRK13928 320 MLEN 323 (336)
T ss_pred HHhc
Confidence 8765
No 64
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=95.77 E-value=0.022 Score=66.02 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHH
Q 007010 480 DSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGA 555 (621)
Q Consensus 480 ~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGA 555 (621)
.-+|.++-.++.-+++-+.-.+++.+ ++.+. .++.|+++||.++.|.+.+++.+.||.++.. ....++.|+||
T Consensus 333 ~itR~efe~l~~~l~~~~~~~i~~~L---~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GA 409 (663)
T PTZ00400 333 KLSRAKLEELTHDLLKKTIEPCEKCI---KDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGA 409 (663)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeecc
Confidence 33677766555555555443333333 34343 5789999999999999999999999987754 34678889999
Q ss_pred HHHHHhhcc
Q 007010 556 AILGAVAAK 564 (621)
Q Consensus 556 A~lA~~a~G 564 (621)
|+.|+.-.+
T Consensus 410 Ai~aa~l~~ 418 (663)
T PTZ00400 410 AIQAGVLKG 418 (663)
T ss_pred HHHHHhhcC
Confidence 999987554
No 65
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=95.68 E-value=0.06 Score=55.82 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=45.7
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis 130 (621)
+||||+|.++++++++|.+|+++...+.+++ ...+++++.+.+.+.+++... ++.+|||+
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~-------~~~~~~~~~~~i~~~i~~~~~-------~~~~igi~ 62 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQIRQRRQIPTP-------ASQTPEALRQALSALVSPLQA-------QADRVAVA 62 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCcEEEEEEecCC-------CCCCHHHHHHHHHHHHHHhhh-------cCcEEEEe
Confidence 7999999999999999999999987776664 123577777777777776542 34567773
No 66
>PLN03184 chloroplast Hsp70; Provisional
Probab=95.65 E-value=0.032 Score=64.71 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAA 556 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA 556 (621)
-+|.++-.+..-+++-+.-.++. .|++.+. .++.|+++||.++.|.+.+++.+.||.++.. .+..|+.|+|||
T Consensus 332 itR~~fe~l~~~l~~r~~~~i~~---~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAA 408 (673)
T PLN03184 332 LTRAKFEELCSDLLDRCKTPVEN---ALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAA 408 (673)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHH---HHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHH
Confidence 35666554444444433322332 3334443 5789999999999999999999999987654 456789999999
Q ss_pred HHHHhhcc
Q 007010 557 ILGAVAAK 564 (621)
Q Consensus 557 ~lA~~a~G 564 (621)
+.|+.-.+
T Consensus 409 i~aa~ls~ 416 (673)
T PLN03184 409 VQAGVLAG 416 (673)
T ss_pred HHHHHhcc
Confidence 99987555
No 67
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.57 E-value=0.032 Score=64.58 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhC-Cce-eeccCCCchhHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPI-ILPRENESVLLGA 555 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg-~pV-~~~~~~e~~alGA 555 (621)
-+|.++-.+..-+++.+.-.++..++ +.+. .++.|+++||.++.|.+.+++.+.|+ .++ ...+..|+.|+||
T Consensus 299 itR~~fe~l~~~l~~~~~~~i~~~L~---~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GA 375 (653)
T PTZ00009 299 ISRARFEELCGDYFRNTLQPVEKVLK---DAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGA 375 (653)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhh
Confidence 35777665555555555444444333 3332 57899999999999999999999996 455 4456778999999
Q ss_pred HHHHHhhcc
Q 007010 556 AILGAVAAK 564 (621)
Q Consensus 556 A~lA~~a~G 564 (621)
|+.|+.-.+
T Consensus 376 a~~aa~ls~ 384 (653)
T PTZ00009 376 AVQAAILTG 384 (653)
T ss_pred hhhHHHhcC
Confidence 999987554
No 68
>PRK11678 putative chaperone; Provisional
Probab=95.44 E-value=0.075 Score=58.61 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC-CceeeccCCCchhHHHH
Q 007010 478 TLDSSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG-CPIILPRENESVLLGAA 556 (621)
Q Consensus 478 ~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg-~pV~~~~~~e~~alGAA 556 (621)
...-+++++.++++..++-+.-.+++. +++.+..++.|+++||.++.|...+++...|+ .|+...+.-++.|.|+|
T Consensus 366 ~~~ItR~efe~ii~~~l~ri~~~i~~~---L~~a~~~~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla 442 (450)
T PRK11678 366 ATEISQQGLEEAISQPLARILELVQLA---LDQAQVKPDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLA 442 (450)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCCCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHH
Confidence 344567887765555555554444433 33456677899999999999999999999996 68888778888999999
Q ss_pred HHHHh
Q 007010 557 ILGAV 561 (621)
Q Consensus 557 ~lA~~ 561 (621)
+.|..
T Consensus 443 ~~a~~ 447 (450)
T PRK11678 443 RWAQV 447 (450)
T ss_pred HHHHh
Confidence 98754
No 69
>PRK13411 molecular chaperone DnaK; Provisional
Probab=95.22 E-value=0.044 Score=63.42 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhC-Cceee-ccCCCchhHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIG-CPIIL-PRENESVLLGA 555 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg-~pV~~-~~~~e~~alGA 555 (621)
-+|.++..+..-+++-+.-.+++ .|++.+. .++.|+++||.++.|.+.+++.+.|+ .++.. ....++.|+||
T Consensus 294 itR~~fe~l~~~l~~~~~~~i~~---~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GA 370 (653)
T PRK13411 294 LTRAKFEELTKDLVEATIEPMQQ---ALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGA 370 (653)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHH
Confidence 36677655444555444333333 3334444 37899999999999999999999997 55544 45678899999
Q ss_pred HHHHHhhccc
Q 007010 556 AILGAVAAKR 565 (621)
Q Consensus 556 A~lA~~a~G~ 565 (621)
|+.|+.-.+.
T Consensus 371 Ai~aa~l~~~ 380 (653)
T PRK13411 371 AIQAGVLGGE 380 (653)
T ss_pred HHHHHhhcCC
Confidence 9999865543
No 70
>PRK12408 glucokinase; Provisional
Probab=94.89 E-value=0.03 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.9
Q ss_pred CeEEEEecCccceeeEEEcCCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (621)
.++|++|||+|++|.+++|.+|+
T Consensus 16 ~~~L~~DIGGT~i~~al~d~~g~ 38 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCASPD 38 (336)
T ss_pred ccEEEEEcChhhhheeEEeccCC
Confidence 45899999999999999998877
No 71
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=94.84 E-value=0.059 Score=57.05 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-cC-EEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-ID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 557 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~-~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~ 557 (621)
+++++.+++...++.+.-.+++.++.... .... ++ .|+++||+++.+.+.+.+.+.++.||.+.. ..++.|.|||+
T Consensus 241 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~ 320 (334)
T PRK13927 241 SSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGK 320 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHH
Confidence 45666666666677666666665554321 1111 23 599999999999999999999999999876 45577999999
Q ss_pred HHHh
Q 007010 558 LGAV 561 (621)
Q Consensus 558 lA~~ 561 (621)
.+..
T Consensus 321 ~~~~ 324 (334)
T PRK13927 321 ALEN 324 (334)
T ss_pred HHhh
Confidence 8765
No 72
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=94.75 E-value=0.21 Score=49.13 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=50.2
Q ss_pred CeEEEEecCccceeeEEEcCCCC-EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEEc
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK-LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV-DGEEVKGVGFA 130 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~-vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~-~~~~I~aIgis 130 (621)
..+|+||+|+|++|++++...|. .+...+..+++-. .......+++++.+.++|.+.++.... +..+..-+|+|
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~--~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~lGfT 138 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPE--ELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLPLGFT 138 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--H--HHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEEEEEE
T ss_pred ceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCCh--HHhcCCcccHHHHHHHHHHHHHHHhcccccccccceEEE
Confidence 46899999999999999996544 4444444443211 111234589999999999999987543 34566667775
No 73
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=94.70 E-value=0.065 Score=62.01 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
...+||||||+|++|++++|.+|+++...+.+++. ++.+.+.+++++++.+. .++.+|||
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~g~i~~~~~~~t~~--------------~~~~~~~i~~~l~~~~~--~~~~~igi 76 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGPGEITQIRVYPGAD--------------YPTLTDAIRKYLKDVKI--GRVNHAAI 76 (638)
T ss_pred CCCEEEEEcCchhheeeeecCCCcccceeEEecCC--------------CCCHHHHHHHHHHhcCC--CCcceEEE
Confidence 34689999999999999999999987776655531 13345556666654332 35677777
No 74
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.65 E-value=0.2 Score=48.31 Aligned_cols=72 Identities=25% Similarity=0.347 Sum_probs=47.7
Q ss_pred EEEEecCccceeeEEEc--CCC--CEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d--~~g--~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
++||||||+++|+++.. .+| ++++....| ... ..| .-.|.+..-+++.++++++=++++....+ ..+++++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~--s~gi~~G-~I~d~~~~~~~I~~ai~~ae~~~~~~i~~-V~v~i~g 76 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVP--SRGIRKG-VIVDIEAAARAIREAVEEAERMAGVKIDS-VYVGISG 76 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEec--CCCccCc-EEECHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEcC
Confidence 47999999999999986 345 455554443 222 344 34588888888888888876666654333 3466655
Q ss_pred C
Q 007010 132 T 132 (621)
Q Consensus 132 ~ 132 (621)
.
T Consensus 77 ~ 77 (187)
T smart00842 77 R 77 (187)
T ss_pred C
Confidence 4
No 75
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.50 E-value=0.23 Score=54.39 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCC---CCcCEEEEecCCCCCHHHHHHHHHhhCCceeec
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHC----NAHG---HKIDTLLACGGLAKNPLFLQQHADIIGCPIILP 545 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l----~~~g---~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~ 545 (621)
++.++..+.++-+|.+.-.+++.++.+ .+.+ ..+..|+++||+|+-+.+.++++++|+.||++.
T Consensus 289 ~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~ 359 (420)
T PRK09472 289 QRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIG 359 (420)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEe
Confidence 356677777888888877777777544 3333 346789999999999999999999999999874
No 76
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=94.29 E-value=0.22 Score=50.47 Aligned_cols=71 Identities=24% Similarity=0.274 Sum_probs=57.4
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCC-EEEEEE
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEE-VKGVGF 129 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~-I~aIgi 129 (621)
+.+|.||+=|.|+.|.+++|++++++..+......+ .-.+.+...+.+.+.++++..+.+.++.. ++++|+
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh-----~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lgL 73 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNH-----WLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLGL 73 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeecccccc-----ccCCchHHHHHHHHHHHHHHhhcCCCccCccceeee
Confidence 469999999999999999999999998876654322 22345677888999999999999888776 787776
No 77
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=94.19 E-value=0.092 Score=55.54 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-CcCE-EEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNA-HGH-KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAI 557 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~-~~~~-I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~ 557 (621)
+++++.+++...++.+.-.+++.++.... ... .+++ |+++||+++.|.+.+.+++.++.||.+.. ..++.++|||+
T Consensus 245 ~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~ 324 (335)
T PRK13930 245 SSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK 324 (335)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHH
Confidence 35565555556666666555555553311 001 1244 99999999999999999999999999876 45677999999
Q ss_pred HHHh
Q 007010 558 LGAV 561 (621)
Q Consensus 558 lA~~ 561 (621)
++..
T Consensus 325 ~~~~ 328 (335)
T PRK13930 325 ALEN 328 (335)
T ss_pred HHhC
Confidence 8754
No 78
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=94.05 E-value=0.13 Score=54.56 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-c-CEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHH
Q 007010 483 EKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-I-DTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 558 (621)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~-~-~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~l 558 (621)
++++.+++...++.+.-.++..++.... .... . ..|+++||+|+-|.+.+.+++.++.||.+.. ..++.|+|||++
T Consensus 245 ~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~ 324 (333)
T TIGR00904 245 SVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKA 324 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHH
Confidence 4455554555555555555554443221 1112 2 2699999999999999999999999999876 456789999988
Q ss_pred HHh
Q 007010 559 GAV 561 (621)
Q Consensus 559 A~~ 561 (621)
+..
T Consensus 325 ~~~ 327 (333)
T TIGR00904 325 LED 327 (333)
T ss_pred HhC
Confidence 644
No 79
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=93.62 E-value=0.17 Score=53.97 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHHHHHHHHhhC--Cceeecc
Q 007010 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR 546 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~ 546 (621)
+.++|-.++.+...+-.+.- .+..++.|+++||.+.++.++..+-+-+. .||.+.+
T Consensus 269 ~~a~d~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~p 327 (351)
T TIGR02707 269 KLILDAMAYQIAKEIGKMAVVLKGKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYP 327 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeC
Confidence 36777777777766655543 33368899999999888776666555543 7888765
No 80
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=93.38 E-value=0.15 Score=54.19 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCcC-EEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHH
Q 007010 483 EKQLALLYLATVQGIAYGTRHIVEHCNA-H-GHKID-TLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAIL 558 (621)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~-~-g~~~~-~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~l 558 (621)
++++..++...++.+.-.++..++.... . .-.++ .|+++||+|+-+.+.+.+++.++.||.+.. ..++.++||+..
T Consensus 244 ~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 244 SKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 4555433344444444444444433211 1 11244 599999999999999999999999999874 455778899876
No 81
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=93.22 E-value=0.42 Score=49.00 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=41.0
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 118 (621)
.++++||||||+++|+++.+.+++++.....+-... ..|. -.|.+...+.+..+++.+-+..+
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~v-r~G~-i~di~~a~~~i~~~~~~ae~~~g 85 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVV-RDGI-VVDFIGAVTIVRRLKATLEEKLG 85 (267)
T ss_pred CCEEEEEEccCceEEEEEEcCCCCEEEEEecccccc-CCCE-EeeHHHHHHHHHHHHHHHHHHhC
Confidence 469999999999999999987777666554443211 3344 45666666665555554433334
No 82
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.23 Score=55.75 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc-CCCchhHHHHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR-ENESVLLGAAILGA 560 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~alGAA~lA~ 560 (621)
+|+++-.+.--++|=+-.-+...++...-.+-++..|=++||+++.|..-+++++.||.+..++- ..|+.|.|||+.++
T Consensus 301 ~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcA 380 (727)
T KOG0103|consen 301 KREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCA 380 (727)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHH
Confidence 56777666667777666555555544221223566788999999999999999999999997654 67899999999988
Q ss_pred hh
Q 007010 561 VA 562 (621)
Q Consensus 561 ~a 562 (621)
.-
T Consensus 381 Il 382 (727)
T KOG0103|consen 381 IL 382 (727)
T ss_pred hc
Confidence 64
No 83
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.11 E-value=0.39 Score=52.66 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=51.0
Q ss_pred CCCeEEEEecCccceeeEEEc--CCC--CEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 007010 53 SRSVFLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGV 127 (621)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d--~~g--~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aI 127 (621)
..++++||||||+++|+++.. .+| ++++....|. .. ..| .-.|.+..-+++.+++.++=+.++....++ .+
T Consensus 6 ~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s--~gi~~G-~I~d~~~~~~aI~~av~~ae~~~g~~i~~v-~v 81 (420)
T PRK09472 6 DRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPS--RGMDKG-GVNDLESVVKCVQRAIDQAELMADCQISSV-YL 81 (420)
T ss_pred CCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccC--CCccCC-EEEcHHHHHHHHHHHHHHHHHHhCCcccEE-EE
Confidence 346899999999999999876 355 3555555542 22 344 446888888888888888766566544443 36
Q ss_pred EEcCC
Q 007010 128 GFAAT 132 (621)
Q Consensus 128 gis~~ 132 (621)
++++.
T Consensus 82 ~i~g~ 86 (420)
T PRK09472 82 ALSGK 86 (420)
T ss_pred EecCc
Confidence 66654
No 84
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=93.03 E-value=0.37 Score=51.41 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~ 546 (621)
+++|+.+ -+.|-.|.++.+.+..+. ..+++|+++|||++|+.+++.+...+..+|...+
T Consensus 260 s~~D~~a---Tlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~ 318 (365)
T PRK09585 260 SPEDVQA---TLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTD 318 (365)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHH
Confidence 5677654 677767766666664432 2356899999999999999999999976666544
No 85
>PRK13317 pantothenate kinase; Provisional
Probab=93.01 E-value=0.23 Score=51.08 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEE
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSA 82 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~ 82 (621)
|.+.+|||+|+|.+|.+++|++++++.+.
T Consensus 1 m~~~iGIDiGstt~K~v~~~~~~~~~~~~ 29 (277)
T PRK13317 1 MEMKIGIDAGGTLTKIVYLEEKKQRTFKT 29 (277)
T ss_pred CCceEEEEeCcccEEEEEEcCCCeEEEEe
Confidence 35889999999999999999888776443
No 86
>PLN02920 pantothenate kinase 1
Probab=93.00 E-value=4 Score=43.70 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=96.6
Q ss_pred eEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (621)
Q Consensus 351 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (621)
-+++++||...+..+.. ++.|-..+++.-||..+-=|...+. +...|++|-
T Consensus 167 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sfdEll 217 (398)
T PLN02920 167 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTSVGGGTFWGLGKLLT------------KCKSFDELL 217 (398)
T ss_pred eEEEEcCCCEEEEEEeC-----------------CCcEEEEcccccchHhHHHHHHHHc------------CCCCHHHHH
Confidence 58888998755443322 1233344555666665544444432 346788887
Q ss_pred HHHHhhhhhcCCCCccCCCCCeEEccccCCCC---CCCCCCCCceeEEc--CCC-----CCCHHHHHHHHHHHHHHHHHH
Q 007010 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MTL-----DSSEKQLALLYLATVQGIAYG 500 (621)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger---~P~~d~~arg~f~G--l~~-----~~~~~~~~~~~rAvlEgia~~ 500 (621)
+++++=.. ..-+ +.+-.+.|.. .|--..++-++-+| ... +-+++|+++ +++--|+++
T Consensus 218 ~lA~~Gd~---------~nvD-llVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~~~~~~~s~eDia~---SLL~mVs~n 284 (398)
T PLN02920 218 ELSHQGNN---------RVID-MLVGDIYGGMDYSKIGLSSTTIASSFGKAISDNKELEDYKPEDVAR---SLLRMISNN 284 (398)
T ss_pred HHHhCCCc---------cccC-ceeccccCCCCCCCCCCCccceeeccCcccccccccccCCHHHHHH---HHHHHHHHH
Confidence 77653110 0112 3355566532 22245666677667 321 235888765 999999998
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCCCH-HHHHHHHHhh------CCceeecc-CCCchhHHHHHHH
Q 007010 501 TRHIVEHCNAHGHKIDTLLACGGLAKNP-LFLQQHADII------GCPIILPR-ENESVLLGAAILG 559 (621)
Q Consensus 501 ~r~~l~~l~~~g~~~~~I~~~GGga~s~-~w~Qi~Advl------g~pV~~~~-~~e~~alGAA~lA 559 (621)
+-++--...+ ...+++|+..|+..+++ ..++.++-.. ++....++ +.-.+|+||++..
T Consensus 285 IgqiA~L~A~-~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 285 IGQISYLNAL-RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred HHHHHHHHHH-HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 8776433322 35688999999999886 6666555544 23333334 5557899997643
No 87
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=92.65 E-value=0.62 Score=50.10 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC--CcCE-EEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010 482 SEKQLALLYLATVQGIAYGTR-HIVEHCNAHGH--KIDT-LLACGGLAKNPLFLQQHADIIGCPIILPR 546 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r-~~l~~l~~~g~--~~~~-I~~~GGga~s~~w~Qi~Advlg~pV~~~~ 546 (621)
++.++.++.++.++-+.=.++ + .+++.+. .+++ |+++||+|+.+.+.+++.+.|+.||++..
T Consensus 281 s~~~l~~ii~~~~~ei~~~i~~~---~L~~~~~~~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~ 346 (371)
T TIGR01174 281 SRKELAEIIEARAEEILEIVKQK---ELRKSGFKEELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGL 346 (371)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCcccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEEC
Confidence 456666555566665554443 3 3444433 4555 99999999999999999999999998865
No 88
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=92.31 E-value=0.62 Score=49.75 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCC-ceeeccCC----C-chhHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPREN----E-SVLLGA 555 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~-pV~~~~~~----e-~~alGA 555 (621)
.++|+.+ -+.|-.|.++.+.++.+. .++++|+++|||++|+.+++.+...+.. +|...+.. + --|+.=
T Consensus 258 ~~~D~~a---Tlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF 331 (364)
T PF03702_consen 258 SPEDILA---TLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF 331 (364)
T ss_dssp -HHHHHH---HHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH
T ss_pred ChHHHHH---HHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH
Confidence 3778654 788877777766666553 3478999999999999999999998864 88765421 1 225666
Q ss_pred HHHHHhhc
Q 007010 556 AILGAVAA 563 (621)
Q Consensus 556 A~lA~~a~ 563 (621)
|++|...+
T Consensus 332 A~La~~~~ 339 (364)
T PF03702_consen 332 AWLAYRRL 339 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 89
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.44 Score=50.25 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=45.9
Q ss_pred CCcCEEEEecCCCCCHHHHHHHHHhhC--CceeeccCCCchhHHHHHHHHhhcccc
Q 007010 513 HKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPRENESVLLGAAILGAVAAKRY 566 (621)
Q Consensus 513 ~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~~~e~~alGAA~lA~~a~G~~ 566 (621)
.++++|+++||..|-|-..|++-|.|+ .|-.-....|+.|.|||+.|++-.|.-
T Consensus 361 sdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee 416 (663)
T KOG0100|consen 361 SDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEE 416 (663)
T ss_pred ccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccccc
Confidence 478999999999999999999999994 344555678999999999999877763
No 90
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=91.86 E-value=0.34 Score=50.70 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=27.6
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeecc
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQI 88 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~ 88 (621)
||+|||+-++|++++|.+|++....+.+.|+
T Consensus 1 ~G~DiGGA~~K~a~~~~~g~~~~v~~~~~pl 31 (318)
T TIGR03123 1 LGIDIGGANTKAAELDEDGRIKEVHQLYCPL 31 (318)
T ss_pred CccccccceeeeEEecCCCceeEEEEecCcc
Confidence 6999999999999999999988877777774
No 91
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=91.24 E-value=0.45 Score=50.55 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010 489 LYLATVQGIAYGTRHIVEHCNA--HGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546 (621)
Q Consensus 489 ~~rAvlEgia~~~r~~l~~l~~--~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~ 546 (621)
.++..++-++-++++.++.+.. .+.++++|+++||+++.+-+.+.+++-||.||++..
T Consensus 247 ~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 247 ALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVIN 306 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcC
Confidence 3568899999999999997654 356899999999999999999999999999999864
No 92
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=90.64 E-value=0.45 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEecCccceeeEEEcCCCCEEEE
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGS 81 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~ 81 (621)
|.+|||+|++|.+++|++|+++.+
T Consensus 1 l~~DIGGT~i~~glvd~~g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecCCCceee
Confidence 579999999999999988776554
No 93
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=90.36 E-value=0.88 Score=51.90 Aligned_cols=55 Identities=27% Similarity=0.334 Sum_probs=46.7
Q ss_pred CCcCEEEEecCCCCCHHHHHHHHHhhCCceee-ccCCCchhHHHHHHHHhhccccC
Q 007010 513 HKIDTLLACGGLAKNPLFLQQHADIIGCPIIL-PRENESVLLGAAILGAVAAKRYS 567 (621)
Q Consensus 513 ~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~-~~~~e~~alGAA~lA~~a~G~~~ 567 (621)
.+++.|.++||.++.|...+.+++.++.+... ....|+.|+|||+.|+.-.|...
T Consensus 308 ~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~ 363 (579)
T COG0443 308 SDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP 363 (579)
T ss_pred hhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc
Confidence 36888999999999999999999999966554 55788999999999998777543
No 94
>PF13941 MutL: MutL protein
Probab=90.32 E-value=1.1 Score=49.29 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=43.2
Q ss_pred EEEEecCccceeeEEEc---CCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 007010 57 FLGVDVGTGSARAGLFD---ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d---~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~ 119 (621)
+|.+|||+|-+|+.+|| .+.++++.++.|+. ++ +.++...+.++++++-++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTT-------v~--~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTT-------VE--PGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCC-------cC--cccHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999 46789999888886 22 256778888888888776653
No 95
>PLN02914 hexokinase
Probab=90.12 E-value=0.87 Score=50.53 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=44.6
Q ss_pred CCeEEEEecCccceeeEEEcCCC---CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010 54 RSVFLGVDVGTGSARAGLFDESG---KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g---~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
...+|+||+|+||.|+++++..| +++...+..+++-. ....-..+++|+.+.++|.+.+++.
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~l~~gt~~eLFdfIA~~i~~fl~~~ 158 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQ--ELMFGTSEELFDFIASGLANFVAKE 158 (490)
T ss_pred eeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence 34799999999999999999655 24554444443211 1123467899999999999999764
No 96
>PTZ00288 glucokinase 1; Provisional
Probab=89.81 E-value=2.1 Score=46.57 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=44.4
Q ss_pred CCCeEEEEecCccceeeEEEcC---CCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEEEE
Q 007010 53 SRSVFLGVDVGTGSARAGLFDE---SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVG 128 (621)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d~---~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~-~~~~~I~aIg 128 (621)
+-.|+||+|||+|++|..+++. ++..+.....++++ --+|..+..+.+.+.+.++.+... +....-.+|+
T Consensus 24 ~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~iA 97 (405)
T PTZ00288 24 SGPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV------TKTDIRELLEFFDEVLQKLKKNLSFIQRVAAGAIS 97 (405)
T ss_pred cCCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc------ccccHHHHHHHHHHHHHHHHhcCccccCcCeEEEE
Confidence 4579999999999999999985 23344444444431 124667777777777777665321 1122334566
Q ss_pred E
Q 007010 129 F 129 (621)
Q Consensus 129 i 129 (621)
|
T Consensus 98 v 98 (405)
T PTZ00288 98 V 98 (405)
T ss_pred E
Confidence 6
No 97
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=89.46 E-value=1.6 Score=44.54 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHHHH-----HHhhCCceeeccC-CCchhHHHHHHH
Q 007010 491 LATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQH-----ADIIGCPIILPRE-NESVLLGAAILG 559 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Qi~-----Advlg~pV~~~~~-~e~~alGAA~lA 559 (621)
..+++..+..+.+.+..+.+. +.....|.++||.++|..+..-+ ..+...|+.++.. ...+++|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKEPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCCSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 378888888888777766543 32223399999999997666544 5556667766554 557799999987
No 98
>PRK13324 pantothenate kinase; Reviewed
Probab=89.17 E-value=1.2 Score=45.38 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=38.7
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
+|.||+|-|++|.+++| +++++...+.++. ......+++. ..++.++++.+.+..+|.+|.+
T Consensus 2 iL~iDiGNT~ik~gl~~-~~~~~~~~r~~t~------~~~~t~de~~----~~l~~~~~~~~~~~~~i~~vii 63 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GDRIVSQIRYATS------SVDSTSDQMG----VFLRQALRENSVDLGKIDGCGI 63 (258)
T ss_pred EEEEEeCCCceEEEEEE-CCEEEEEEEEecC------ccccchHHHH----HHHHHHHHhcCCCccCCCeEEE
Confidence 68999999999999999 3456554444431 0122334444 4455555554555566777777
No 99
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=89.08 E-value=1.7 Score=46.62 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCE-EEEecCCCCCHHHHHHHHHhhCCc-eeecc--CCCchhHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDT-LLACGGLAKNPLFLQQHADIIGCP-IILPR--ENESVLLGAAI 557 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~-I~~~GGga~s~~w~Qi~Advlg~p-V~~~~--~~e~~alGAA~ 557 (621)
...|++.-.+..+|-+...+...+- ++.+ .++ |.++||.+-|-.+++.+.+..+.. |.++. ..++.++|||+
T Consensus 134 ~~~dlAa~~Q~~~E~~v~~~~~~~~--~~~g--~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiGaA~ 209 (360)
T PF02543_consen 134 RHADLAASAQKVLEEIVLHLVRHLL--ERTG--IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIGAAL 209 (360)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHH--HHHT----SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH--HHhC--CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHHHHH
Confidence 4578888888999988876543322 2233 455 999999999999999999996654 77766 45688999999
Q ss_pred HHHhhccc
Q 007010 558 LGAVAAKR 565 (621)
Q Consensus 558 lA~~a~G~ 565 (621)
.+....+.
T Consensus 210 ~~~~~~~~ 217 (360)
T PF02543_consen 210 YAWHELGG 217 (360)
T ss_dssp HHHHHTT-
T ss_pred HHHHHhcC
Confidence 99877665
No 100
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=2 Score=45.24 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh-CCceee
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII-GCPIIL 544 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl-g~pV~~ 544 (621)
+++|..+ ...|-.+- .+++.+.-....+++++++|||++|+++|+.+|..+ |.+|..
T Consensus 264 ~a~Dv~a---TL~eltA~---tIv~s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~ 321 (371)
T COG2377 264 NAEDVQA---TLVELTAA---TIVKSVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVAT 321 (371)
T ss_pred CHHHHHH---HHHHHHHH---HHHHHHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeeee
Confidence 4567543 67775554 444444433356789999999999999999999999 555543
No 101
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=88.31 E-value=1.1 Score=47.66 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC--CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeecc
Q 007010 490 YLATVQGIAYGTRHIVEHCNAH--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPR 546 (621)
Q Consensus 490 ~rAvlEgia~~~r~~l~~l~~~--g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~ 546 (621)
.+.++|-++-++++.++.+... +.++++|+++||+++.+-+...++..||.||++..
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~ 314 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVAN 314 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecC
Confidence 4588888988888888876442 45789999999999999999999999999999864
No 102
>PLN02362 hexokinase
Probab=88.14 E-value=1.4 Score=49.08 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=42.3
Q ss_pred CeEEEEecCccceeeEEEcCCCC---EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~---vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 118 (621)
..||+||+|+||.|+++++..|+ .+...+..+++- +....-..+++|+.+.++|.+.++..+
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip--~~l~~~~~~eLFd~IA~~i~~fl~~~~ 159 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIP--QHLMNSTSEVLFDFIASSLKQFVEKEE 159 (509)
T ss_pred eeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecC--hhhccCCHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999997653 222211223211 111234678999999999999997643
No 103
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=88.08 E-value=4.4 Score=42.99 Aligned_cols=165 Identities=14% Similarity=0.141 Sum_probs=91.0
Q ss_pred eEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (621)
Q Consensus 351 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (621)
-+++++||...+..+.. ++.|-..+++.-||..+-=|...+. +...|+++-
T Consensus 158 yllvniGsGvSi~~v~~-----------------~~~~~rvgGs~iGGgT~~GL~~llt------------~~~~~~e~~ 208 (341)
T PF03630_consen 158 YLLVNIGSGVSILKVEG-----------------PNQFERVGGSSIGGGTFWGLCSLLT------------GCKSFDEIL 208 (341)
T ss_dssp EEEEEESSSEEEEEEEE-----------------TTEEEEEEEES-SHHHHHHHHHHHH---------------SHHHHH
T ss_pred EEEEEcCCceEEEEEeC-----------------CCceEEEeccccchHhHHHHHHHhc------------CCCCHHHHH
Confidence 58889998755443222 2334444556666666544444332 335677777
Q ss_pred HHHHhhhhhcCCCCccCCCCCeEEccccCCCC--CCCCCCCCceeEEcCCCC-------CCHHHHHHHHHHHHHHHHHHH
Q 007010 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR--SPIADPKSKGIICGMTLD-------SSEKQLALLYLATVQGIAYGT 501 (621)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger--~P~~d~~arg~f~Gl~~~-------~~~~~~~~~~rAvlEgia~~~ 501 (621)
+++++=.. ..-+ +.+..+.|.. .+.-..+.-++-+|--.. .+++|+++ +++--|++++
T Consensus 209 ~la~~G~~---------~~vD-llV~DIyg~~y~~~~L~~~~~AssFGk~~~~~~~~~~~~~~Dia~---sll~mv~~nI 275 (341)
T PF03630_consen 209 ELAKKGDN---------SNVD-LLVGDIYGGDYNKIGLPGDLTASSFGKVQSKAKRKDSFSKEDIAK---SLLNMVSNNI 275 (341)
T ss_dssp HHHHH--G---------GGTS-EEHHHHHSS-BGGGTB-TTSEEETTCCGGSHHHH-CC--HHHHHH---HHHHHHHHHH
T ss_pred HHhcCCCc---------cccC-ceeeeccCCCcccCCCCHHHHHhhhhhhhhcccccccCCHHHHHH---HHHHHHHHHH
Confidence 77654111 0112 3355555544 222345566665554332 25788665 9999999998
Q ss_pred HHHHHHHHhCCCCcCEEEEecCCCC-CHHHHHHHH---Hhh---CCceeecc-CCCchhHHHHHH
Q 007010 502 RHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHA---DII---GCPIILPR-ENESVLLGAAIL 558 (621)
Q Consensus 502 r~~l~~l~~~g~~~~~I~~~GGga~-s~~w~Qi~A---dvl---g~pV~~~~-~~e~~alGAA~l 558 (621)
-++.-...+. ..+++|+++|...+ ++..+..++ +-. ++....++ +.-.+|+||.+.
T Consensus 276 g~la~l~A~~-~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 276 GQLAYLHAKI-HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HHHHHHHHHH-HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 8875443332 35789999999885 578888888 433 23334444 556889998764
No 104
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=88.08 E-value=1 Score=48.44 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=47.6
Q ss_pred EEEEecCccceeeEEEc--CCC--CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 57 FLGVDVGTGSARAGLFD--ESG--KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d--~~g--~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
++||||||+++|+++.. .++ ++++....|..-. ..| .-.|++..-+++.++++++-++++....+ ..+++++.
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi-~~G-~I~d~~~~~~~i~~al~~~e~~~~~~i~~-v~~~v~g~ 78 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGI-KKG-VINDIEAAVGSIQRAIEAAELMAGCEIRS-VIVSISGA 78 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc-cCc-EEEcHHHHHHHHHHHHHHHHHHhCCcccE-EEEEEccc
Confidence 68999999999999976 344 4445444443211 344 34588888888888888776556654333 34666654
No 105
>PLN02405 hexokinase
Probab=88.02 E-value=1.6 Score=48.69 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=44.1
Q ss_pred CeEEEEecCccceeeEEEcCCC---CEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010 55 SVFLGVDVGTGSARAGLFDESG---KLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g---~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
..|++||+|+||.|++++...| ..+...+..+++-. ..-.-..+++|+.+.++|.+.+++.
T Consensus 95 G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~--~~~~gt~~~LFdfIA~~i~~fl~~~ 158 (497)
T PLN02405 95 GLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPP--HLMTGSSDALFDFIAAALAKFVATE 158 (497)
T ss_pred eeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecCh--hhccCCHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999665 24444444444211 1223467889999999999999764
No 106
>PLN02596 hexokinase-like
Probab=87.98 E-value=1.5 Score=48.73 Aligned_cols=61 Identities=11% Similarity=0.150 Sum_probs=42.8
Q ss_pred CeEEEEecCccceeeEEEcCCCC---EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK---LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~---vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
..||+||+|+||.|+++++..|+ +....+..+++- .....-..+++|+.+.++|.+.+++.
T Consensus 96 G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip--~~l~~~t~~eLFd~IA~~i~~fl~~~ 159 (490)
T PLN02596 96 GLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIP--SNVLNGTSQELFDYIALELAKFVAEH 159 (490)
T ss_pred eEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCC--hHhhcCCHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999997664 233333333321 11123367889999999999999764
No 107
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=1.5 Score=48.50 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHH-HHHHHhhCCceeecc--CCCchhHHHHHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADIIGCPIILPR--ENESVLLGAAIL 558 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~-Qi~Advlg~pV~~~~--~~e~~alGAA~l 558 (621)
...|++...++.+|.+...+.+.+.. +.| ..+|..+||.+.|=.|+ +++...++..|.+.. ...+.|+|||+.
T Consensus 257 ~~~diAasaQ~~lE~l~l~~~~~~~~--~~g--~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~ 332 (555)
T COG2192 257 RAADIAASAQAYLEELVLEMLRYLRE--ETG--EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALA 332 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HhC--ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHH
Confidence 45688888889999998866554432 222 67899999999999999 999999998998866 456779999999
Q ss_pred HHhhccc
Q 007010 559 GAVAAKR 565 (621)
Q Consensus 559 A~~a~G~ 565 (621)
+..-.+.
T Consensus 333 ~~~~~~~ 339 (555)
T COG2192 333 VKRELGG 339 (555)
T ss_pred HHHHhcC
Confidence 8876544
No 108
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.33 E-value=1.3 Score=50.16 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeec--cCCCchhHHHHHHHHhhccccC
Q 007010 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILP--RENESVLLGAAILGAVAAKRYS 567 (621)
Q Consensus 490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~--~~~e~~alGAA~lA~~a~G~~~ 567 (621)
+|..+|-+. ..+....-....+..|+++||.++-|...+++.|.|+-.-... ...|+.|+|||+.|+.-.|...
T Consensus 314 f~~~~~~v~----~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~ 389 (620)
T KOG0101|consen 314 FRSTLEPVE----KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKS 389 (620)
T ss_pred HHHHHHHHH----HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCcc
Confidence 446666554 2333222223578899999999999999999999998633322 3578999999999998777543
No 109
>PLN02666 5-oxoprolinase
Probab=86.77 E-value=1 Score=55.63 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=54.6
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHH-HHHHHHHHHHHHHH-----HHcCCCCCCEEEE
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSST-DIWHAICAAVDSAC-----SLANVDGEEVKGV 127 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~-~~~~~~~~~l~~~~-----~~~~~~~~~I~aI 127 (621)
+.|.||||+|+|-+-++++|.++.-+...+.+... ..|+. -+.+.+..+++.++ ...++++++|..|
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~~~~~~~~~K~~stt-------p~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~v 80 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVPGGSDFRVLKLLSVD-------PANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEWI 80 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEecCCCeEEEEEeCCCC-------CCChhHHHHHHHHHHHHHHhcCCcccccCCChHHccEE
Confidence 46899999999999999999766534444544310 13443 35555555555443 2224556678888
Q ss_pred EEcCC-CceEEecCCCCcee
Q 007010 128 GFAAT-CSLVAVDADGSPVS 146 (621)
Q Consensus 128 gis~~-~~~v~vD~~G~pl~ 146 (621)
..+++ .+-.++.++|.++.
T Consensus 81 ~hGTT~atNAllerkGa~v~ 100 (1275)
T PLN02666 81 RMGTTVATNALLERKGERIA 100 (1275)
T ss_pred EEechHHHHHHHhccCCcEE
Confidence 88765 55566777776654
No 110
>PTZ00107 hexokinase; Provisional
Probab=86.70 E-value=3.1 Score=46.04 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=42.4
Q ss_pred CeEEEEecCccceeeEEEcCCCC-EEEEEEeee--ccccCCC---c--cccCHHHHHHHHHHHHHHHHHHc
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK-LLGSASSPI--QIWKEGD---C--IEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~-vv~~~~~~~--~~~~~~g---~--~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
..+|+||+|+||.|++++...|+ .....+..+ |...-.| . -+...+++|+.+.++|.+.+++.
T Consensus 74 G~fLAlDlGGTN~RV~~V~L~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~ 144 (464)
T PTZ00107 74 GVYYAIDFGGTNFRAVRVSLRGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEEN 144 (464)
T ss_pred ceEEEEecCCceEEEEEEEeCCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999997654 332333233 2111111 1 12267899999999999999764
No 111
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=86.69 E-value=2.7 Score=43.28 Aligned_cols=57 Identities=7% Similarity=0.055 Sum_probs=37.3
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
.+|||+|+|-+|.+..|.+++++...... ++.+++.+. +++..... ..+..|.+|+-
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~~~f~~~~~-----------~~~~~~~~~----l~~~~~~~----~~~~~i~~TGg 58 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGRRKFKTFET-----------TNIDKFIEW----LKNQIHRH----SRITTLCATGG 58 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCcEEEEEeec-----------ccHHHHHHH----HHHHHHhh----cCceEEEEECC
Confidence 58999999999999999999887543322 344444443 33332221 34677888875
No 112
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=86.62 E-value=1.8 Score=43.49 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=33.2
Q ss_pred EEecCccceeeEEEcCCCCEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHH
Q 007010 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSA 113 (621)
Q Consensus 59 gIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~ 113 (621)
||||||+++|+++.+.+++.++.... +... ..| .-.|.+.....+..+++.+
T Consensus 1 g~dig~~~ik~v~~~~~~~~~~~~~~--~~~~~~~g-~I~d~~~~~~~l~~l~~~a 53 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQPVAGVMQ--FADVVRDG-IVVDFLGAVEIVRRLKDTL 53 (239)
T ss_pred CCCcccceEEEEEEecCCCEEEEEec--ccccccCC-eEEEhHHHHHHHHHHHHHH
Confidence 79999999999999977765444433 3222 233 3457766666555555443
No 113
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=86.37 E-value=1.7 Score=44.70 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC--CCCCH-HHHHHHHHhhCCceeeccCCCchhHHHHHHHHh
Q 007010 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG--LAKNP-LFLQQHADIIGCPIILPRENESVLLGAAILGAV 561 (621)
Q Consensus 490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GG--ga~s~-~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~ 561 (621)
++++.|++++.+.-.+-. + .+..+|+++|. ..+.+ .+...+.+.|+.+|.+... +.+|.|+|++|.-
T Consensus 242 ~dal~~~vameIasLl~l--~--~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~-ksAA~G~AiIA~d 311 (326)
T TIGR03281 242 LDSLAMSVAMEIASLGLL--D--CKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS-ESAAIGLALIAED 311 (326)
T ss_pred HHHHHHHHHHHHHhheec--c--CCCCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc-hhhhhhHHHHHHH
Confidence 579999999877655432 1 23448999997 77888 9999999999999999875 7779999999853
No 114
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=86.34 E-value=0.58 Score=49.32 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=34.5
Q ss_pred EEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHHHH
Q 007010 517 TLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAIL 558 (621)
Q Consensus 517 ~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA~l 558 (621)
-|+++||+|.-+-+-+.+++-+++||.+.+.++ +.+.|+..+
T Consensus 276 GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~ 318 (326)
T PF06723_consen 276 GIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKL 318 (326)
T ss_dssp -EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHT
T ss_pred CEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHH
Confidence 499999999999999999999999999988665 557787654
No 115
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=86.32 E-value=3.9 Score=43.38 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=43.5
Q ss_pred CeEEEEecCccceeeEEEcCC-C--CEEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEc
Q 007010 55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFA 130 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~-g--~vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis 130 (621)
..++|||||++++|++.+... + +++.....+.|... ..|. -.|++.+- ++|++++++.+.... -..+++.
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~~----~~l~~~~~~~~~~~k-~v~~alp 76 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAVA----EALKELLSELGINTK-KAATAVP 76 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHHH----HHHHHHHHHcCCCcc-eEEEEec
Confidence 468999999999999999843 3 44455555665322 3332 34665554 555555555554332 2456665
Q ss_pred CC
Q 007010 131 AT 132 (621)
Q Consensus 131 ~~ 132 (621)
+.
T Consensus 77 ~~ 78 (348)
T TIGR01175 77 GS 78 (348)
T ss_pred CC
Confidence 54
No 116
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.17 E-value=1.7 Score=45.06 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC
Q 007010 489 LYLATVQGIAYGTRHIVEHCNAH--GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 547 (621)
Q Consensus 489 ~~rAvlEgia~~~r~~l~~l~~~--g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~ 547 (621)
..+-+++.+.-.+++.++-+... ...+++|+++||+++-.-+-+.+.+-++.|+.+.+.
T Consensus 260 vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t~vanP 320 (354)
T COG4972 260 VLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPTEVANP 320 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCeEeeCH
Confidence 35688999999999999877543 358899999999999999999999999999999653
No 117
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=86.07 E-value=2.3 Score=41.03 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC-CCchhHHHHHHH
Q 007010 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE-NESVLLGAAILG 559 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~alGAA~lA 559 (621)
+-++|=+|--.+.+++ +.+++.++++||.+.-+-.-.++-.-|+.+|+.|.. .-.+.||.|+-.
T Consensus 208 ~PV~eKMAeIv~~hie-----~~~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 208 KPVYEKMAEIVARHIE-----GQGITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred hHHHHHHHHHHHHHhc-----cCCCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhcc
Confidence 3666666655555554 456889999999999999999999999999999884 457888888654
No 118
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.03 E-value=1.4 Score=50.96 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=46.6
Q ss_pred CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC-C
Q 007010 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT-C 133 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~-~ 133 (621)
.+.||||+|+|.+-++++|.++.++...+.++. |+.......+.++.+..... ..+|..|-++++ .
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~~g~~~~~K~lTt-----------P~~~~~~~~~~~~~~~~~~~--~~~i~~v~~gTT~a 68 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDEDGGVLATIKVLTT-----------PDLPSGIVNAGIRLALELLE--GSEVDLVVHGTTLA 68 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCCCCEEEEEEccCC-----------CCchhhHHHHHHHHHhhccc--cccccEEEEeccHH
Confidence 578999999999999999987767777666653 33333333334433332211 135666666655 4
Q ss_pred ceEEecCCCC
Q 007010 134 SLVAVDADGS 143 (621)
Q Consensus 134 ~~v~vD~~G~ 143 (621)
+-.++.+.|.
T Consensus 69 TNallerkG~ 78 (674)
T COG0145 69 TNALLERKGL 78 (674)
T ss_pred HHHHHhccCc
Confidence 4445555555
No 119
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.82 E-value=2.4 Score=42.19 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=41.0
Q ss_pred CeEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
..++|||-|||.+|.+++|.++.+..+-.+ .|. ... +=.+.++++-..+++..++|.-|+++.
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~~~~Fklgr----------ae~--~~~--~ek~~L~~l~de~~i~l~eidlialtY 65 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEKDPEFKLGR----------AEL--RKV--AEKSLLRELEDEARIALEEIDLIALTY 65 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCCCceEEech----------hhh--hhh--hHHHHHHHhhHhhCCccccceEEEEee
Confidence 368999999999999999987765432111 110 000 013445555555567778999999985
No 120
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=85.29 E-value=3.5 Score=43.72 Aligned_cols=78 Identities=13% Similarity=0.231 Sum_probs=55.5
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCC-Cccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEG-DCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~-g~~e-qd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (621)
.+||||--+..+-++++|.+|+++........ .... |-.. .....=.+.+..++++++++++....+|.+|++|...
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~il~~~~~sq~-~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GP 80 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGEILSNVRETYI-TPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGP 80 (345)
T ss_pred eEEEEEccchhhEEEEEECCCcEEEEEEeecc-ccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 58999999999999999977888876554332 1111 3222 2223335567778888888888888999999998765
Q ss_pred c
Q 007010 134 S 134 (621)
Q Consensus 134 ~ 134 (621)
|
T Consensus 81 G 81 (345)
T PTZ00340 81 G 81 (345)
T ss_pred C
Confidence 5
No 121
>PRK13326 pantothenate kinase; Reviewed
Probab=85.18 E-value=2.7 Score=42.91 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 559 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA 559 (621)
.++-|.+..+..+++.+++. +. .-.|+++||.++ +++..+..+..+ .++-+..|-.++.
T Consensus 194 Gi~~g~~~~I~g~i~~~~~e~~~-~~~vv~TGG~a~------~l~~~~~~~~~~--~~~LvL~GL~~i~ 253 (262)
T PRK13326 194 GVIYQYKYLIEGVYHDLKRNYDR-EFNLIITGGNSN------LILPLISVDFIF--NLYLTLEGIRILG 253 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHhhCCCCcEE--CcccHHHHHHHHH
Confidence 56666667777777777653 32 336999999654 667777777666 3566666766553
No 122
>PRK09604 UGMP family protein; Validated
Probab=85.14 E-value=2.3 Score=44.98 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=53.0
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeee-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~-~~~~-~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
++||||-.+..+-++++|.+++++....... .... ..|.. +.....=-+.+...+++++++.+.++.+|.+|+++..
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~G 81 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAG 81 (332)
T ss_pred eEEEEEccccceEEEEEECCCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 5899999888889999987768887655332 1121 22221 1222333456677788888888888899999999765
Q ss_pred Cc
Q 007010 133 CS 134 (621)
Q Consensus 133 ~~ 134 (621)
+|
T Consensus 82 PG 83 (332)
T PRK09604 82 PG 83 (332)
T ss_pred CC
Confidence 43
No 123
>PRK03011 butyrate kinase; Provisional
Probab=84.99 E-value=2.5 Score=45.25 Aligned_cols=66 Identities=23% Similarity=0.364 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHHHHHHHHhhC--Cceeecc-CC--CchhHHHH
Q 007010 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR-EN--ESVLLGAA 556 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~-~~--e~~alGAA 556 (621)
+.++|-.++.+...+-.+.. .+.+++.|+++||.+.++.+++.+-+-+. .||.+.. .. ++.++||+
T Consensus 271 ~~ald~~~~~lak~I~~l~~~L~gdpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 271 KLVYEAMAYQIAKEIGAMAAVLKGKVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHH
Confidence 47888888888877766654 33468999999999988888776666554 3665543 33 35566654
No 124
>PRK14878 UGMP family protein; Provisional
Probab=84.91 E-value=3.1 Score=43.92 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=49.7
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccc-cCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIE-QSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~e-qd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (621)
||||--+.-+-++++| +++++......+. ....|... .-...-.+.+...++++++++++++.+|.+|+++...+
T Consensus 1 l~iets~~~~s~al~~-~~~i~~~~~~~~~-~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG 76 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-EDKVLANVRDTYV-PEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPG 76 (323)
T ss_pred CEEecCCcccEEEEEE-CCEEEEEEEEecc-cCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 5899888888899998 4557766655431 11233322 12223344566788888888888889999999976543
No 125
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=84.11 E-value=6.3 Score=42.97 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 547 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~ 547 (621)
++..+.++.+|-+|-+..-++.-++........+..|.++||+++-+-...+..++|++||++...
T Consensus 288 t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P 353 (418)
T COG0849 288 TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVP 353 (418)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCC
Confidence 456677777787777766665444433221235678999999999999999999999999988554
No 126
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=83.59 E-value=2.2 Score=49.84 Aligned_cols=75 Identities=21% Similarity=0.321 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC---Cceeecc----CCCchhHH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---CPIILPR----ENESVLLG 554 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg---~pV~~~~----~~e~~alG 554 (621)
.+.+++. ++.+.++-.+.+.++.+.+. ..+++|.++||.++|..+++.+.+.++ ..|..+. ...+.++|
T Consensus 630 ~~~~IAa---~fh~tla~~L~~~a~~~~~~-~g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislG 705 (711)
T TIGR00143 630 DRSKIAH---IAHKFVASGLVEIATAIAVP-FGIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLG 705 (711)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHH
Confidence 3455543 77777776666666555432 246789999999999999999998874 6776543 34566888
Q ss_pred HHHHHH
Q 007010 555 AAILGA 560 (621)
Q Consensus 555 AA~lA~ 560 (621)
.|++|+
T Consensus 706 Qa~~a~ 711 (711)
T TIGR00143 706 QAVAAA 711 (711)
T ss_pred HHHHhC
Confidence 887763
No 127
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=83.26 E-value=5.7 Score=41.72 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccCCCchhHHHHHHHHhhc
Q 007010 491 LATVQGIAYGTRHIVEH-CNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVAA 563 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~-l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~~e~~alGAA~lA~~a~ 563 (621)
.+..|.+.-.+.+..+. ++. ...+++.++||.+.|..+++++..+. |..++.++. +-+.==+||+|..|.
T Consensus 239 ~sfQ~av~~~L~~kt~rAl~~--~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~-~lCtDNaaMIA~ag~ 312 (342)
T COG0533 239 ASFQEAVFDMLVEKTERALKH--TGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPL-ELCTDNAAMIAYAGL 312 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCCh-HhccchHHHHHHHHH
Confidence 36655555444443332 222 35678999999999999999999976 445766552 222223456665544
No 128
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=82.73 E-value=1.8 Score=43.94 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCCCeEEEEecCccceeeEEEcCCCCEEEEEEee
Q 007010 52 RSRSVFLGVDVGTGSARAGLFDESGKLLGSASSP 85 (621)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~ 85 (621)
|+..+++.||=||||.|+-+++.+|+++.+.+-.
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~dg~~l~~r~~~ 35 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRGDGAVLAERRSE 35 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcCCcceeeeeccc
Confidence 5557899999999999999999999988765443
No 129
>PRK13320 pantothenate kinase; Reviewed
Probab=82.35 E-value=4.1 Score=41.12 Aligned_cols=58 Identities=19% Similarity=0.191 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAIL 558 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~l 558 (621)
.++-|.+..+..+++.+++.-.+ -.|+++||.++ ++++.+..++.. .++-...|-..+
T Consensus 182 G~~~~~~~~i~~~i~~~~~~~~~-~~vi~TGG~a~------~l~~~l~~~~~~--~p~Lvl~GL~~~ 239 (244)
T PRK13320 182 GVVWGCVAEIEGLIEAYKSKLPE-LLVILTGGDAP------FLASRLKNTIFA--DEHAVLKGLNRI 239 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCCHH------HHHHhcCCccEE--CcchHHHHHHHH
Confidence 45555555555666666553212 47999999865 566667777655 355556665544
No 130
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=82.34 E-value=4.5 Score=42.92 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=36.5
Q ss_pred EEecCccceeeEEEcCCCC---EEEEEEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 59 GVDVGTGSARAGLFDESGK---LLGSASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 59 gIDiGTtsiKa~l~d~~g~---vv~~~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
|||||+.++|++-++..++ +......++|.-. .+| .-.|++.+-++ |++++++.+.. .+-..+++.+.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~----L~~~~~~~~~~-~k~v~~aip~~ 72 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEA----LKELLKENKIK-GKKVVLAIPGS 72 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHH----HHHHHHHHT-----EEEEEE-GG
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHH----HHHHHHHcCCC-CCeEEEEeCCC
Confidence 8999999999999996543 4455666666322 222 23567666555 55555544442 33445777554
No 131
>PRK13331 pantothenate kinase; Reviewed
Probab=82.27 E-value=3.8 Score=41.49 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCc-------eeeccCCCchhHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCP-------IILPRENESVLLGAAILG 559 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~p-------V~~~~~~e~~alGAA~lA 559 (621)
.++-|.+..+..+++.+++.-. .-.|+++||.++ ++++.+..+ ..+ .++-+..|-..++
T Consensus 182 Gi~~g~~g~i~~~i~~~~~~~~-~~~vi~TGG~a~------~l~~~~~~~~~~~~~~~~~--~~~LvL~GL~~i~ 247 (251)
T PRK13331 182 GVIYTILAGLRDFIEDWLSLFP-DGKIVLTGGDGE------LLHNYLQDLDPELAQRLRV--DPNLIFWGIAAIR 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCCHH------HHHHHhhccccccccccEE--CcchHHHHHHHHH
Confidence 5666666667777776665321 346999999754 555555543 333 3566666766654
No 132
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=81.17 E-value=3.7 Score=43.19 Aligned_cols=76 Identities=20% Similarity=0.324 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh----CCceeeccC----CCchhHHHHHHHH-
Q 007010 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII----GCPIILPRE----NESVLLGAAILGA- 560 (621)
Q Consensus 490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl----g~pV~~~~~----~e~~alGAA~lA~- 560 (621)
+.|.+|+++-.+...+. . -.+++.|+++|..++++.+..-+.+.| +.+|..... ...+|.|+|++|-
T Consensus 240 ~ea~~E~i~k~V~~l~~---~-~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 240 WEAMIESIVKAVASLLA---S-VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHHhc---c-cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhh
Confidence 56889988866653332 2 236678999999999988876655555 556654432 2347999999984
Q ss_pred hhccccCCH
Q 007010 561 VAAKRYSSL 569 (621)
Q Consensus 561 ~a~G~~~s~ 569 (621)
.+=|.|+.+
T Consensus 316 laGG~~~~l 324 (343)
T PF07318_consen 316 LAGGRYKEL 324 (343)
T ss_pred hhcccHHHH
Confidence 444665544
No 133
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=81.00 E-value=4.6 Score=40.77 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=22.1
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeec
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQ 87 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~ 87 (621)
|.||+|-|++|.++|+. ++++...+.++.
T Consensus 2 L~iDiGNT~i~~g~~~~-~~~~~~~r~~t~ 30 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-NKVYQFWRLATN 30 (243)
T ss_pred EEEEECCCcEEEEEEEC-CEEEEEEEecCC
Confidence 68999999999999984 466665444443
No 134
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=80.99 E-value=5.8 Score=44.93 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=53.4
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
++||||--+..+-++|++.+|+++......+. .+.+|.. +.....=.+.+..++++++++++++..+|.+|++|..
T Consensus 2 ~il~iets~~~~s~a~~~~~~~~~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~g 78 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDGDVLFNESDPYK-PPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQG 78 (535)
T ss_pred EEEEEEccccceEEEEEeCCCcEEEEEEeecc-CCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCC
Confidence 68999999999999999976788877654421 1122321 1112223455677888888888888899999999854
No 135
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=80.50 E-value=6.9 Score=41.53 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccC
Q 007010 489 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 547 (621)
Q Consensus 489 ~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~ 547 (621)
+.+++.|.++-.+.+.++..-+. ..+++|.++||.|.|..+++.+.+.+ +.+++.++.
T Consensus 239 iaasfq~~v~~~L~~k~~~a~~~-~~~~~lvv~GGVAaN~~LR~~l~~~~~~~~~~~~~p~~ 299 (345)
T PTZ00340 239 LCFSLQETIFAMLVEVTERAMSH-CGSNEVLIVGGVGCNLRLQEMMQQMAKERGGKLFAMDE 299 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEeCCh
Confidence 34477777776655554433221 35678999999999999999999986 788888763
No 136
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=80.28 E-value=7.8 Score=39.49 Aligned_cols=60 Identities=25% Similarity=0.420 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHHHHHHHHHhhC--Cceeecc-CCCc
Q 007010 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPLFLQQHADIIG--CPIILPR-ENES 550 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~w~Qi~Advlg--~pV~~~~-~~e~ 550 (621)
+-++++.+|++..-+-.+.. ...+++.|+++||.|.+..++..+.+-+. .||.+.. +.|-
T Consensus 272 ~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~El 335 (358)
T COG3426 272 KLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDEL 335 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHH
Confidence 46788889988776665544 45689999999999999999999999865 6777644 4443
No 137
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=80.24 E-value=2.5 Score=44.44 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=42.0
Q ss_pred EEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010 59 GVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (621)
Q Consensus 59 gIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (621)
|||=||+|...+.+|++|+++...+.|... +..+|..+.+.+.+. .++..|+..+-+|
T Consensus 1 GIDpGT~s~dv~~~dd~g~v~~~~~ipt~~------v~~~p~~iv~~l~~~------------~~~dlIa~psGyG 58 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGKVIFYFSIPTEE------VAKNPSIIVEELEEF------------GDIDLIAGPSGYG 58 (343)
T ss_pred CCCCCCCcEEEEEEccCCcEEEEeeccHHH------hhhCHHHHHHHHHhc------------cCCCEEEeCCcCC
Confidence 799999999999999889999888887753 456776654432222 3567788765444
No 138
>PRK09604 UGMP family protein; Validated
Probab=80.18 E-value=7.7 Score=41.08 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccC----CCchhHHH
Q 007010 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE----NESVLLGA 555 (621)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~----~e~~alGA 555 (621)
+.++++ ++.+.++-.+.+.++...+. ..+++|.++||.+.|..+++.+.+.+ |.+|.+++. +.+.++|+
T Consensus 227 ~~~iA~---s~q~~l~~~l~~~~~~~~~~-~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ 302 (332)
T PRK09604 227 KADIAA---SFQAAVVDVLVIKTKRALKQ-TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAA 302 (332)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHH
Confidence 456554 66666666665665555432 34678999999999999999999998 888887653 33445555
Q ss_pred HHHHHhhcc
Q 007010 556 AILGAVAAK 564 (621)
Q Consensus 556 A~lA~~a~G 564 (621)
|-+-..-.|
T Consensus 303 ag~~~~~~g 311 (332)
T PRK09604 303 AGYERLKAG 311 (332)
T ss_pred HHHHHHHcC
Confidence 544333334
No 139
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=79.30 E-value=6.2 Score=41.45 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=51.9
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeee-cccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~-~~~~-~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (621)
+|+||--+..+-++++|.+++++....... ..+. ..|-. +.....=-+.+...+++++++.+.+..+|.+|+++...
T Consensus 1 iLaIdTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GP 80 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDGKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGP 80 (314)
T ss_pred CEEEECcccceEEEEEECCceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 489999999999999986555776655422 1111 22211 22233344566777888888888888999999997664
Q ss_pred c
Q 007010 134 S 134 (621)
Q Consensus 134 ~ 134 (621)
|
T Consensus 81 G 81 (314)
T TIGR03723 81 G 81 (314)
T ss_pred C
Confidence 3
No 140
>PLN02902 pantothenate kinase
Probab=79.08 E-value=48 Score=39.30 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=96.3
Q ss_pred eEEEEecccceecceeCcccccCCccccccccccCCeeEEcccccchhHHHHHHHHhhhhhhHHHHHHhhcCCCHHHHHH
Q 007010 351 RMVLVCGTSTCHMAVSRNKLFIPGVWGPFWSAMVPKFWLTEGGQSATGALLDYIIENHVASRSLANRAASRHVSLFELLN 430 (621)
Q Consensus 351 ~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~Wl~~~~~~~~~~~~~~~~~~~~~~~~l~ 430 (621)
-+++++||...+..+.. ++.|--.+++.-||..+-=|...+. +...|++|-
T Consensus 216 yLLVNIGSGVSilkV~~-----------------~~~~~RVgGTsIGGGT~~GL~~LLt------------g~~sFdEll 266 (876)
T PLN02902 216 YLLVNIGSGVSMIKVDG-----------------DGKFERVSGTNVGGGTYWGLGRLLT------------KCKSFDELL 266 (876)
T ss_pred eEEEEcCCceEEEEEec-----------------CCcEEEecccccccHhHHHHHHHHc------------CCCCHHHHH
Confidence 58889998765443321 1233344555556655543444332 456788887
Q ss_pred HHHHhhhhhcCCCCccCCCCCeEEccccCCCC---CCCCCCCCceeEEc--CC-----CCCCHHHHHHHHHHHHHHHHHH
Q 007010 431 GTLESMIHERNSPFVAALTEDIHVLPDFHGNR---SPIADPKSKGIICG--MT-----LDSSEKQLALLYLATVQGIAYG 500 (621)
Q Consensus 431 ~~~~~~~~~~~~p~~~~g~~gl~flP~l~Ger---~P~~d~~arg~f~G--l~-----~~~~~~~~~~~~rAvlEgia~~ 500 (621)
+++.+=.. ..-+ +.+-.+.|.. .+.-..++-++-+| .. .+.+++|+++ +++--|+++
T Consensus 267 ~LA~~Gd~---------~~vD-llVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~~~~~~~s~eDiar---SLL~mIs~N 333 (876)
T PLN02902 267 ELSQRGDN---------SAID-MLVGDIYGGMDYSKIGLSASTIASSFGKVISENKELSDYRPEDISL---SLLRMISYN 333 (876)
T ss_pred HHHhcCCc---------cccC-eeeccccCCCCcCCCCCCcchhhhccCcccccccccccCCHHHHHH---HHHHHHHHH
Confidence 77654110 0112 3446666531 11234555566666 21 1245888765 999999999
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCC-CHHHHHHHHHhhC------Cceeecc-CCCchhHHHHHHH
Q 007010 501 TRHIVEHCNAHGHKIDTLLACGGLAK-NPLFLQQHADIIG------CPIILPR-ENESVLLGAAILG 559 (621)
Q Consensus 501 ~r~~l~~l~~~g~~~~~I~~~GGga~-s~~w~Qi~Advlg------~pV~~~~-~~e~~alGAA~lA 559 (621)
+-++.-...+ ...+++|+.+|..-+ ++.-|+.++-.++ +....++ +.-.+|+||.+..
T Consensus 334 IGqiA~L~A~-~~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~ 399 (876)
T PLN02902 334 IGQISYLNAL-RFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSY 399 (876)
T ss_pred HHHHHHHHHH-HcCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcC
Confidence 8887543333 346889999999775 5777787776653 3333344 4557799998544
No 141
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=78.36 E-value=4.6 Score=44.15 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=27.5
Q ss_pred CCeEEEEecCccceeeEEEc-CCCCEEEEEEee
Q 007010 54 RSVFLGVDVGTGSARAGLFD-ESGKLLGSASSP 85 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d-~~g~vv~~~~~~ 85 (621)
+.|=+++|+|||.+++-++| .+|+++.+...-
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~ 195 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITS 195 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeecc
Confidence 45889999999999999999 689999876543
No 142
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=78.10 E-value=5.8 Score=41.80 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=50.7
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (621)
||||-.+..+-+++++.+++++........ ....|.. +.....=-+.+...++++++++++++.+|.+|+++...
T Consensus 1 Lgiets~~~~s~al~~~~~~i~~~~~~~~~-~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gP 76 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDEDGEILANVSDTYV-PEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGP 76 (322)
T ss_pred CEEeccccceEEEEEECCCeEEEEEEeecc-cCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCC
Confidence 689998888999999877778776655431 1122322 12222333446677888888888888999999997554
No 143
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=78.08 E-value=22 Score=32.57 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.3
Q ss_pred eEEEEecCccceeeEEEcCCCCE
Q 007010 56 VFLGVDVGTGSARAGLFDESGKL 78 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~v 78 (621)
.+||||+|+..+=.++-|..+.+
T Consensus 5 ~iLalD~G~kriGvAv~d~~~~~ 27 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDPLGGT 27 (138)
T ss_pred cEEEEEeCCCEEEEEEecCCCCE
Confidence 48999999999999999987754
No 144
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=76.92 E-value=7.6 Score=40.58 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=53.9
Q ss_pred EEEecCccceeeEEEcCCCCEEEEEEeeeccc-c-CCCc-cccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010 58 LGVDVGTGSARAGLFDESGKLLGSASSPIQIW-K-EGDC-IEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~-~-~~g~-~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (621)
||||-.+..+-++++|.+++++.......... . ..|- .+.....=-+.+...+++++++.+.++.+|.+|+++..+|
T Consensus 1 LaidTs~~~~sval~~~~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG 80 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPG 80 (305)
T ss_pred CEEecCccceEEEEEECCCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCC
Confidence 68999999999999986578888765554321 1 2232 2223334455667778888888888899999999976554
No 145
>PTZ00297 pantothenate kinase; Provisional
Probab=75.73 E-value=75 Score=40.53 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecC-CCCCHHHHHHHHHhhC------Cceeecc-CCCchhH
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGG-LAKNPLFLQQHADIIG------CPIILPR-ENESVLL 553 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GG-ga~s~~w~Qi~Advlg------~pV~~~~-~~e~~al 553 (621)
+++|+++ +++-.|.+++-++.- |......+++|+..|+ ...++..++.++..++ +....++ +.-.+|+
T Consensus 1363 ~~~Di~~---sll~~is~nIgqia~-l~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~ 1438 (1452)
T PTZ00297 1363 SAIDIVR---SLLNMISSNVTQLAY-LHSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGAL 1438 (1452)
T ss_pred CHHHHHH---HHHHHHHHHHHHHHH-HHHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHh
Confidence 3678665 999999999887743 3332357889999999 5678999999999873 3344444 4567899
Q ss_pred HHHHHH
Q 007010 554 GAAILG 559 (621)
Q Consensus 554 GAA~lA 559 (621)
||++..
T Consensus 1439 Ga~~~~ 1444 (1452)
T PTZ00297 1439 GCATLD 1444 (1452)
T ss_pred hhhhcC
Confidence 998753
No 146
>PRK00976 hypothetical protein; Provisional
Probab=74.47 E-value=13 Score=38.98 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCH--HHHHHHHHhhCCceeeccCCCchhHHHHHHHHhh
Q 007010 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP--LFLQQHADIIGCPIILPRENESVLLGAAILGAVA 562 (621)
Q Consensus 490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~--~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a 562 (621)
++...+.++..+..++-. .+++.|++.||.++.+ .+.+.+.+.+..++.. -..+++++|||++|.--
T Consensus 244 id~~~~~LA~~IAnLi~l-----lDPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~a~-LG~dAGaiGAA~iA~~i 312 (326)
T PRK00976 244 IDTLALFVAMEIASLLLL-----NPEDNVVLAGSVGEMDEPDVSERIKELLDKKVLV-LGKESAAIGLALIARDI 312 (326)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCCEEEEcCccccCchhHHHHHHHHHhcccccc-cCCchHHHHHHHHHHHH
Confidence 445555566555544443 3578899999999876 4555555555544322 24688899999998654
No 147
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=74.47 E-value=7.1 Score=44.75 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcCEEEEecCCCCCHHHHHHHHHhhCCc-e-eeccCCCchhHHH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGH---KIDTLLACGGLAKNPLFLQQHADIIGCP-I-ILPRENESVLLGA 555 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~---~~~~I~~~GGga~s~~w~Qi~Advlg~p-V-~~~~~~e~~alGA 555 (621)
-||+.+-+++.=+.+-+.=- +-+.|...+. .|+.|++.||++|-|....++.+..+.. | .-....|++++||
T Consensus 331 vTRe~fEelc~Dl~~r~~~P---i~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGa 407 (902)
T KOG0104|consen 331 VTREEFEELCADLEERIVEP---INDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGA 407 (902)
T ss_pred eeHHHHHHHHHHHHHhhhhh---HHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHH
Confidence 45665554443444433322 3344444332 5788999999999999999999887743 2 2235689999999
Q ss_pred HHHHHhhcccc
Q 007010 556 AILGAVAAKRY 566 (621)
Q Consensus 556 A~lA~~a~G~~ 566 (621)
++.|+.-..-|
T Consensus 408 v~~aA~LSksF 418 (902)
T KOG0104|consen 408 VYQAAHLSKSF 418 (902)
T ss_pred HHHHHhhcccc
Confidence 99988654333
No 148
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=73.60 E-value=11 Score=42.73 Aligned_cols=70 Identities=17% Similarity=0.204 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeecc----CCCchhHHHHHHHH
Q 007010 490 YLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR----ENESVLLGAAILGA 560 (621)
Q Consensus 490 ~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~----~~e~~alGAA~lA~ 560 (621)
.+++.+.++-.+.+.+....+. ..+++|.++||.+.|..+++.+.+.+ +.+|.+++ ...+.++|+|....
T Consensus 222 A~~~q~~l~~~l~~~~~~~~~~-~g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~ 298 (535)
T PRK09605 222 CYSLQETAFAMLTEVTERALAH-TGKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLM 298 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHH
Confidence 3477777777666666655431 24678999999999999999999776 77888765 34566777775443
No 149
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=72.79 E-value=9.1 Score=41.36 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=40.8
Q ss_pred CeEEEEecCccceeeEEEcC--CCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010 55 SVFLGVDVGTGSARAGLFDE--SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~--~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
..+|+||+|+||.|++++.. +|+..-+.+ ++. .+..=.-.+.++++|.-+.+.++..+.+.
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~s-ks~-lp~e~~~~~~~~~l~~~iadrl~~fi~~~ 137 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGGDGTFDIEQS-KSF-LPVECRDSESRDELFGFIADRLAAFIKEQ 137 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCCCCCcccccC-ccc-CchhhccCCChHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999985 454433222 111 11111112388999999999999987653
No 150
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=71.10 E-value=12 Score=38.84 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=38.7
Q ss_pred EEEEecCccceeeEEEcCC-C--CEEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHHHHHcC-CCCCCEEEEEE
Q 007010 57 FLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLAN-VDGEEVKGVGF 129 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~-g--~vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~~~~~~~-~~~~~I~aIgi 129 (621)
+-+||+||.++|..+++.+ + +++...+.++.+-. ..| ..+++.+ +.+.+++++..+... ....+|.+++-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e~i-~~~~~~l~~f~~~~~~~~v~~i~~vaT 78 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEEAI-ERALEALKRFAELLRGFPVDEVRAVAT 78 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHHHH-HHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 4689999999999999953 3 34444444444321 112 2233333 334455554443221 22356666665
Q ss_pred cC
Q 007010 130 AA 131 (621)
Q Consensus 130 s~ 131 (621)
++
T Consensus 79 sa 80 (300)
T TIGR03706 79 AA 80 (300)
T ss_pred HH
Confidence 43
No 151
>PRK03011 butyrate kinase; Provisional
Probab=70.98 E-value=19 Score=38.50 Aligned_cols=68 Identities=15% Similarity=0.070 Sum_probs=42.4
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
.+|.|.-|+||+|.++|+ +.+.+.+....++... -+... |..++. .+.+.+.+++.+++..+|.+|+-
T Consensus 3 ~il~inpgststk~a~~~-~~~~~~~~~~~h~~~~~~~~~~~~--~q~~~r---~~~i~~~l~~~g~~~~~l~av~~ 73 (358)
T PRK03011 3 RILVINPGSTSTKIAVFE-DEKPIFEETLRHSAEELEKFKTII--DQYEFR---KQAILDFLKEHGIDLSELDAVVG 73 (358)
T ss_pred EEEEEcCCCchheEEEEc-CCceeeeeccccCHHHHhcCCCcc--chHHHH---HHHHHHHHHHcCCChhcceEEEE
Confidence 589999999999999998 4455555555544221 12222 333332 34455566666777778888843
No 152
>PRK14878 UGMP family protein; Provisional
Probab=70.79 E-value=11 Score=39.70 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccCCCchhHHHHHHHH
Q 007010 484 KQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 484 ~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~~e~~alGAA~lA~ 560 (621)
.++++ ++.+.++-.+-+..+...+. ..+++|.++||.+.|..+++.+.+.+ |.+|.+++. .-+-=|++|+|.
T Consensus 215 ~diAa---~fq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~-~~~~D~GimIA~ 289 (323)
T PRK14878 215 EDVCY---SLRETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPP-EYAGDNGAMIAY 289 (323)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC-CCCchHHHHHHH
Confidence 45554 67777666666655555432 24678999999999999999999987 888888663 222234444444
No 153
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=70.77 E-value=9.1 Score=38.49 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHH-hCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC---C----CchhHHHHHHH
Q 007010 493 TVQGIAYGTRHIVEHCN-AHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE---N----ESVLLGAAILG 559 (621)
Q Consensus 493 vlEgia~~~r~~l~~l~-~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~---~----e~~alGAA~lA 559 (621)
+++.+.-.+++.++... +.| .++|+.+|=| ..+.|.-++.+|..++..++ . -+.|.|+|.+.
T Consensus 258 ~~~~~l~~l~e~I~~~a~r~g--L~~Vv~~GlG---efLi~~A~~~lg~ec~~i~e~~g~~~s~v~PA~a~a~L~ 327 (330)
T COG1548 258 AYNALLELLAENIEEKAKRYG--LNTVVATGLG---EFLIQEACKRLGYECISIDETYGKEVSKVAPAVAAAKLL 327 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--hhhhhhccch---HHHHHHHHHhhCCeEEEhhhhhccchhhhchHHHHHHHH
Confidence 33333344445555433 334 5678888866 89999999999999876542 1 24577777664
No 154
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=69.74 E-value=10 Score=39.63 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeecc
Q 007010 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPR 546 (621)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~ 546 (621)
+.+++. ++.+.++-.+-+.++...+. ..+++|.++||.+.|..+++.+.+.+ +.+|.+++
T Consensus 231 ~~~iAa---sfq~~l~~~l~~~~~~~~~~-~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~ 293 (305)
T TIGR00329 231 KEDIAY---SFQETAFDHLIEKTKRALKD-TGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPP 293 (305)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCC
Confidence 455554 67777766666666555442 35678999999999999999999987 66787765
No 155
>PRK10854 exopolyphosphatase; Provisional
Probab=69.63 E-value=18 Score=40.74 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=43.0
Q ss_pred CeEEEEecCccceeeEEEcC-CC--CEEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 007010 55 SVFLGVDVGTGSARAGLFDE-SG--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLA-NVDGEEVKGV 127 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~-~g--~vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~~~~~~-~~~~~~I~aI 127 (621)
..+-+|||||.|+|..+++. +| +++...+..+.+-. ..| ..+++. .+..++++++..+.+ .....++.++
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~e~-~~r~~~~L~~F~~~~~~~~v~~v~~v 87 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSEEA-MERGLNCLSLFAERLQGFSPANVCIV 87 (513)
T ss_pred CEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCHHH-HHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 46889999999999999994 34 44555555554321 222 223333 344455555443322 1234678888
Q ss_pred EEcC
Q 007010 128 GFAA 131 (621)
Q Consensus 128 gis~ 131 (621)
|-++
T Consensus 88 ATsA 91 (513)
T PRK10854 88 GTHT 91 (513)
T ss_pred ehHH
Confidence 8755
No 156
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=69.32 E-value=17 Score=38.24 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccC
Q 007010 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRE 547 (621)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~ 547 (621)
+.++++ ++.+.++-.+.+.+....+. ..+++|.++||.+.|..+++.+.+.+ +.++.+++.
T Consensus 232 ~~~iA~---~~q~~l~~~l~~~~~~~~~~-~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~ 295 (314)
T TIGR03723 232 KADIAA---SFQAAVVDVLVEKTKRALKK-TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPL 295 (314)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCC
Confidence 456655 66666666666666555432 34678999999999999999999998 888887653
No 157
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=68.88 E-value=15 Score=38.76 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHh---hCCceeecc
Q 007010 483 EKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADI---IGCPIILPR 546 (621)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Adv---lg~pV~~~~ 546 (621)
+.++++ ++.+.++-.+.++.+.+.+. ..+++|.++||.+.|..+++.+.+. .|.+|.++.
T Consensus 215 ~~diAa---sfq~~l~~~l~~~a~~~~~~-~g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~ 277 (322)
T TIGR03722 215 LEDVCY---SLQETAFAMLVEVTERALAH-TGKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPP 277 (322)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH-hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCC
Confidence 456554 67776666666666555442 2467899999999999999999995 477887655
No 158
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=68.68 E-value=13 Score=36.24 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=45.1
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
+|+||-.|..+-+++++ +++++.+...... ..--+.+...+++++++.+....+|.+|+++..
T Consensus 1 iLaidTs~~~~sval~~-~~~~~~~~~~~~~------------~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~G 63 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-DGEILAERSEEAG------------RNHSEILLPMIEELLAEAGLSLQDLDAIAVGVG 63 (202)
T ss_pred CEEEECCCcceEEEEEE-CCEEEEEEeehhh------------HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecC
Confidence 48999999999999998 6677765443321 222344556677777777888899999999654
No 159
>PRK00976 hypothetical protein; Provisional
Probab=68.32 E-value=15 Score=38.66 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=36.4
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC-C-C
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA-T-C 133 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~-~-~ 133 (621)
+++|||=|||.+|.++++.+...+.+-.+ ++.-..=...+.++ +..++.++|..|++|- | .
T Consensus 2 ~~~g~dhgt~~~~~~~~~~~~~~~f~~~r---------------~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~ysmgd 64 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEGGKKSIFKLPR---------------TEAKSMEKSALEEL--EKRVPLEDIELIAVTYSMGD 64 (326)
T ss_pred eEEeecCCCccEEEEEEcCCceeEEEeeH---------------HHhhhccHHHHHHH--hcCCChhheeEEEEeecccC
Confidence 58999999999999999433322221111 11111111223333 3345678999999985 5 4
Q ss_pred ce
Q 007010 134 SL 135 (621)
Q Consensus 134 ~~ 135 (621)
++
T Consensus 65 ~~ 66 (326)
T PRK00976 65 GI 66 (326)
T ss_pred Ch
Confidence 43
No 160
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=67.46 E-value=5.2 Score=44.19 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=51.0
Q ss_pred HHHHHHhCC---CCcCEEEEecCCCCCHHHHHHHHHhhCC-ceeeccCCCchhHHHHHHHHhhccccC
Q 007010 504 IVEHCNAHG---HKIDTLLACGGLAKNPLFLQQHADIIGC-PIILPRENESVLLGAAILGAVAAKRYS 567 (621)
Q Consensus 504 ~l~~l~~~g---~~~~~I~~~GGga~s~~w~Qi~Advlg~-pV~~~~~~e~~alGAA~lA~~a~G~~~ 567 (621)
+-..|+..+ -++++|++.||..+-|...+.+.++||. |-.-....|+.|+|||+.+++-.|..+
T Consensus 340 ~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVk 407 (640)
T KOG0102|consen 340 CKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVK 407 (640)
T ss_pred HHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcccc
Confidence 444565543 3688999999999999999999999985 555566789999999999887666544
No 161
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=66.49 E-value=16 Score=38.40 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=54.9
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEee-eccc-cCCCccccCHH-HHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSP-IQIW-KEGDCIEQSST-DIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~-~~~~-~~~g~~eqd~~-~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (621)
+|||.-.-.-+-++|+|+.++++.+.... +... ..+|-..--.. .=-+.+..++++++..++..+.++.+|++|-..
T Consensus 34 VLgIETSCDDTavaVVd~~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gP 113 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEFSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGP 113 (405)
T ss_pred eeeEecccCcceeeeecccccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCC
Confidence 89999988899999999999988775321 1111 13343221111 223456777888888888889999999997666
Q ss_pred ceE
Q 007010 134 SLV 136 (621)
Q Consensus 134 ~~v 136 (621)
|+.
T Consensus 114 Gl~ 116 (405)
T KOG2707|consen 114 GLP 116 (405)
T ss_pred Cce
Confidence 643
No 162
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=65.23 E-value=15 Score=37.25 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 559 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA 559 (621)
.++-|.++.++..++.+++.-..-..++++||.++ ++.+.+. ..+. .+.-+..|-+.++
T Consensus 190 G~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~------~~~~~~~-~~~~--d~~Ltl~Gl~~i~ 248 (251)
T COG1521 190 GVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK------LLLDELD-IDIF--DPNLTLLGLALLL 248 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH------hhhhhcc-ccee--CcchhHHHHHHHh
Confidence 67777777777777777764335567999999876 4445544 2222 2445566766554
No 163
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=64.74 E-value=11 Score=33.46 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=27.1
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCC---ccccCHHHHHHHHHHHHHHH
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGD---CIEQSSTDIWHAICAAVDSA 113 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g---~~eqd~~~~~~~~~~~l~~~ 113 (621)
+++||+|++.++++++.. +........++...+..| ..-.|.+++-+++..++.++
T Consensus 1 i~~iDiGs~~~~~~i~~~-~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED-GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEET-TEEEEEEEES----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEe-CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 478999999999999974 333333344443222112 12235566666665555554
No 164
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=64.10 E-value=20 Score=37.41 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=38.8
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEE---EEeeecccc-CCCccccCHHHHHHHHHHHHHHHHHHcCCCC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGS---ASSPIQIWK-EGDCIEQSSTDIWHAICAAVDSACSLANVDG 121 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~---~~~~~~~~~-~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~ 121 (621)
..+|||||++++|++-....|+-..- +..++|... .+| --.|++ ++.+.|++++++.++..
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe~y~~~~lp~~iv~dg-~ivd~~----av~~~Lk~ala~~gi~~ 75 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLEKYASEPLPENIVADG-KIVDYD----AVASALKRALAKLGIKS 75 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeeeeeeecccCccccccC-CcccHH----HHHHHHHHHHHhcCcch
Confidence 58999999999999999976654433 333444322 222 234554 45566777777766543
No 165
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=63.88 E-value=18 Score=39.75 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=40.9
Q ss_pred EecCccceeeEEEc-CCCCEEEEEEeeeccccCCCccccCHHHHHHH-HHHHHHHHHHHcCCCC---CCEEEEEEcCC
Q 007010 60 VDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA-ICAAVDSACSLANVDG---EEVKGVGFAAT 132 (621)
Q Consensus 60 IDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~-~~~~l~~~~~~~~~~~---~~I~aIgis~~ 132 (621)
+|+|+|-+|+.+|| ++++++..++..+|+. + +++... +.+++.++.++.+... ..+.-++.||-
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt------~---~dv~~G~~~~a~~~l~~~~~~~~~~~~~~~~~acSSA 69 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIE------S---DHLAGGFFNKANEKLNEDLAGKELNSGEVAKKACSSA 69 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccc------h---hhhhcchHHHHHHHHHHhcCCcccccccceEEEEccc
Confidence 69999999999999 4577777777766521 1 245455 5666766666544321 33355555554
No 166
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=63.60 E-value=24 Score=36.26 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--CcCEEEEecCCCCC-HHHHHHHHHhhCCc-----eeeccCCCchhHHHHHHHHh
Q 007010 490 YLATVQGIAYGTRHIVEHCNAHGH--KIDTLLACGGLAKN-PLFLQQHADIIGCP-----IILPRENESVLLGAAILGAV 561 (621)
Q Consensus 490 ~rAvlEgia~~~r~~l~~l~~~g~--~~~~I~~~GGga~s-~~w~Qi~Advlg~p-----V~~~~~~e~~alGAA~lA~~ 561 (621)
+|-.=|-++-.++.++..+..... ..=.|+++||.-+| +.|++=+-+-+-.. ++.....+.+|+|||++|+.
T Consensus 237 fr~Ag~~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~ 316 (336)
T KOG1794|consen 237 FRNAGETLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAAS 316 (336)
T ss_pred HHHHHHHHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhh
Confidence 344445555555555544432212 23359999998764 77776544443222 55666788999999999987
Q ss_pred hccc
Q 007010 562 AAKR 565 (621)
Q Consensus 562 a~G~ 565 (621)
-.+.
T Consensus 317 ~~~~ 320 (336)
T KOG1794|consen 317 LDNI 320 (336)
T ss_pred hccc
Confidence 6653
No 167
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=63.32 E-value=11 Score=42.02 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=41.2
Q ss_pred CeEEEEecCccceeeEEEcCC-C--CEEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 007010 55 SVFLGVDVGTGSARAGLFDES-G--KLLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLA-NVDGEEVKGV 127 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~-g--~vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~~~~~~-~~~~~~I~aI 127 (621)
+.+.+||+||.|+|.++++.. | +++...+....+-. ..| ..+++.+ +...++++.+.+.+ +...++|..|
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g--~L~~eai-~R~~~aL~~f~e~~~~~~~~~v~~v 79 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATG--NLSEEAI-ERALSALKRFAELLDGFGAEEVRVV 79 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccC--CcCHHHH-HHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 467899999999999999954 4 34443333332211 122 2233333 33444555443322 2346778888
Q ss_pred EEcC
Q 007010 128 GFAA 131 (621)
Q Consensus 128 gis~ 131 (621)
+.++
T Consensus 80 ATsA 83 (492)
T COG0248 80 ATSA 83 (492)
T ss_pred hhHH
Confidence 8754
No 168
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=62.77 E-value=31 Score=38.70 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=43.2
Q ss_pred CCeEEEEecCccceeeEEEcC-CCC--EEEEEEeeecccc---CCCccccCHHHHHHHHHHHHHHHHHHc-CCCCCCEEE
Q 007010 54 RSVFLGVDVGTGSARAGLFDE-SGK--LLGSASSPIQIWK---EGDCIEQSSTDIWHAICAAVDSACSLA-NVDGEEVKG 126 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~-~g~--vv~~~~~~~~~~~---~~g~~eqd~~~~~~~~~~~l~~~~~~~-~~~~~~I~a 126 (621)
.+++-.|||||.|+|.++++. +|. ++...+..+.+-. ..| ..+++. .+..++++++..+.. .....+|.+
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e~-i~r~~~~L~~F~~~~~~~~v~~i~~ 81 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNEA-MERGWQCLRLFAERLQDIPPSQIRV 81 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHHH-HHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 357899999999999999994 443 4444455444321 222 223333 344445555443322 123467888
Q ss_pred EEEcC
Q 007010 127 VGFAA 131 (621)
Q Consensus 127 Igis~ 131 (621)
+|.++
T Consensus 82 vATsA 86 (496)
T PRK11031 82 VATAT 86 (496)
T ss_pred EEeHH
Confidence 88765
No 169
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=61.20 E-value=37 Score=35.58 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=19.9
Q ss_pred CcCEEEEe-cCCCCCHHHH----HHHHHhhCCce
Q 007010 514 KIDTLLAC-GGLAKNPLFL----QQHADIIGCPI 542 (621)
Q Consensus 514 ~~~~I~~~-GGga~s~~w~----Qi~Advlg~pV 542 (621)
+++-|+++ ||||..++|+ .+.-.|..+|+
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~ 108 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPI 108 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhCCC
Confidence 56776666 9999999998 44444555443
No 170
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=60.92 E-value=38 Score=37.48 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=41.7
Q ss_pred CeEEEEecCccceeeEEEcCCCC--EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK--LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLAN 118 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~--vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 118 (621)
..+++||+|+|+.|++++-..|. .+......+.+-. ....-..+++|+.+..++.+.+++.+
T Consensus 86 G~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~--~~m~gt~~~Lfd~Ia~~l~~F~~~~~ 149 (474)
T KOG1369|consen 86 GKFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPE--EIMQGTGEELFDFIARCLADFLDKMG 149 (474)
T ss_pred CCEEEEecCCCceEEEEEEecCCcccceeeeeeEecCH--HHHcCchHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999996654 2333322222111 01111678899999999999887654
No 171
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=60.55 E-value=7 Score=45.22 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=18.6
Q ss_pred CeEEEEecCccceeeEEEcCCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (621)
..+||||+|||+.++++++ +|+
T Consensus 2 ~~viGIDlGTt~s~va~~~-~g~ 23 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVME-GGE 23 (627)
T ss_pred CcEEEEEeCcccEEEEEEE-CCE
Confidence 3689999999999999998 443
No 172
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=60.51 E-value=22 Score=38.50 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCC-CHHHHHHHHHhhC-Cceee
Q 007010 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAK-NPLFLQQHADIIG-CPIIL 544 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~-s~~w~Qi~Advlg-~pV~~ 544 (621)
+-++|..+|+++..+-.+.. ....++.|+++||.+. ++..++++.+.+. .||.+
T Consensus 296 ~la~d~~~y~i~k~Ig~~~a~l~G~vDaivfTGGige~~~~vr~~~~~~l~~~gv~l 352 (388)
T PF00871_consen 296 KLALDAFAYQIAKYIGAYAAVLEGGVDAIVFTGGIGENSALVRERICRKLWFLGVKL 352 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-SEEEEEHHHHHHTHHHHHHHHCTGGGGTB-B
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCEEEEccccccchHHHHHHHHhhcCcCCeEe
Confidence 36799999999888776643 4347899999999884 6788888888865 56665
No 173
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=60.18 E-value=14 Score=32.72 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=32.1
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCCc
Q 007010 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATCS 134 (621)
Q Consensus 96 eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~~ 134 (621)
+.++++++++..+++.+++++.++++++|.+|=+|.+..
T Consensus 12 ~n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~D 50 (118)
T PF07736_consen 12 ENTPEEILEATRELLEEILERNELSPEDIVSIIFTVTPD 50 (118)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-TT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCC
Confidence 468899999999999999999899999999999976543
No 174
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=59.88 E-value=38 Score=39.05 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCC---ce----eeccCCCchhH
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGC---PI----ILPRENESVLL 553 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~---pV----~~~~~~e~~al 553 (621)
..+..++. +...+++-.+.++...+.+. ..+++|.++||...|..+++-+++.+.. .+ +++....+-++
T Consensus 664 ~~~~~iA~---~fh~~la~~~~e~~~~~a~~-~gi~~V~lsGGVf~N~~l~~~~~~~l~~~~f~~~~~~~~P~~DggIsl 739 (750)
T COG0068 664 DEPEKIAT---KFHNALAEGFAELAVELAKK-YGINKVVLSGGVFQNRLLLERLAKYLKKEGFRFLFHQEVPAGDGGISL 739 (750)
T ss_pred CCHHHHHH---HHHHHHHHHHHHHHHHHHHh-cCccEEEeeCCeeecHHHHHHHHHHHHhcCceEeeecccCCCCCceeH
Confidence 34555544 67777777667776666542 4578999999999999999999999874 34 34444556689
Q ss_pred HHHHHH
Q 007010 554 GAAILG 559 (621)
Q Consensus 554 GAA~lA 559 (621)
|=|++|
T Consensus 740 GQ~v~~ 745 (750)
T COG0068 740 GQAVAA 745 (750)
T ss_pred HHHHHH
Confidence 988887
No 175
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=59.86 E-value=35 Score=31.07 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEecCccceeeEEEcCCCCE
Q 007010 56 VFLGVDVGTGSARAGLFDESGKL 78 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~v 78 (621)
.+||||+|+..+=.++-|..+.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~~~ 24 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGII 24 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTSS
T ss_pred eEEEEEeCCCeEEEEEecCCCCe
Confidence 48999999999999999987754
No 176
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=59.23 E-value=27 Score=36.80 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=55.6
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeec-ccc-CCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQ-IWK-EGDCI-EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~-~~~-~~g~~-eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
.+|||.-.-.-+-+++++.++ ++......+- .+. .+|.+ |.-...=.+.+..++++++++++++.++|.+|++|..
T Consensus 2 ~iLGIEtScDeT~vaIv~~~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~g 80 (342)
T COG0533 2 IILGIETSCDETGVAIVDEEK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAG 80 (342)
T ss_pred eEEEEEcccccceeEEEeccC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecC
Confidence 478998888888889998766 6655444332 122 33433 3333445667788899999999988899999999876
Q ss_pred CceE
Q 007010 133 CSLV 136 (621)
Q Consensus 133 ~~~v 136 (621)
.|++
T Consensus 81 PGL~ 84 (342)
T COG0533 81 PGLG 84 (342)
T ss_pred CCch
Confidence 6643
No 177
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=59.20 E-value=37 Score=37.10 Aligned_cols=73 Identities=22% Similarity=0.324 Sum_probs=46.2
Q ss_pred eEEEEecCccceeeEEEc--CCCC--EEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 56 VFLGVDVGTGSARAGLFD--ESGK--LLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d--~~g~--vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
++.|+||||+.+++++-- .+|+ ++....++-.-. ..| .-.|.+..-+++.+++.++=..++....++ .+++++
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGi-k~G-~I~di~~~~~sI~~av~~AE~mag~~i~~v-~vs~sG 83 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGI-KKG-VIVDLDAAAQSIKKAVEAAERMAGCEIKSV-IVSLSG 83 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCccc-ccc-eEEcHHHHHHHHHHHHHHHHHhcCCCcceE-EEEecc
Confidence 899999999999999977 3442 222222221100 334 345888888888888888776666543332 355554
No 178
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=57.06 E-value=26 Score=34.05 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=10.7
Q ss_pred CeEEEEecCccceeeEEEcCCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (621)
++++|+|+||.++-.+++|.+|+
T Consensus 29 k~~vGVDLGT~~iV~~vlD~d~~ 51 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDRDGQ 51 (277)
T ss_pred ceEEEeecccceEEEEEEcCCCC
Confidence 34444444444444444444444
No 179
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=56.82 E-value=24 Score=34.98 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=47.4
Q ss_pred eEEEEecCccceeeEEEcC-CCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCC
Q 007010 56 VFLGVDVGTGSARAGLFDE-SGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~-~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~ 132 (621)
.+|+||..|..+-+++++. +++++.+...+.+ + .--+.+.-.+++++.+.+....++.+|+++--
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~---------r---~hse~l~~~i~~ll~~~~~~~~dld~iav~~G 67 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLK---------R---NHAERLMPMIDELLKEAGLSLQDLDAIAVAKG 67 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEecc---------c---cHHHHHHHHHHHHHHHcCCCHHHCCEEEEccC
Confidence 4899999999999888885 6788887766654 1 11233445666777777777789999999654
No 180
>PRK12440 acetate kinase; Reviewed
Probab=56.18 E-value=16 Score=39.37 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHH-HHHHHHHhhC
Q 007010 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADIIG 539 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~-w~Qi~Advlg 539 (621)
-++|..+|.++..+-.+.. .+ .++.|+++||...|.. +++.+.+-++
T Consensus 298 lA~d~f~yri~k~Ig~~~a~l~-gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 298 LAFEVFTYRVAKYIASYLAALD-SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 5788999999888776644 45 6899999999886554 6666665544
No 181
>CHL00094 dnaK heat shock protein 70
Probab=56.03 E-value=8.9 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=18.8
Q ss_pred CeEEEEecCccceeeEEEcCCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (621)
.+++|||+|||+.++++++ +|+
T Consensus 2 ~~viGIDlGTt~s~va~~~-~g~ 23 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVME-GGK 23 (621)
T ss_pred CceEEEEeCcccEEEEEEE-CCE
Confidence 3789999999999999997 454
No 182
>PRK09557 fructokinase; Reviewed
Probab=55.36 E-value=48 Score=34.26 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---------CCceeecc-CCCchhHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---------GCPIILPR-ENESVLLGAAILG 559 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---------g~pV~~~~-~~e~~alGAA~lA 559 (621)
.+++-.+..+...+-.+.. -..++.|++.||.++.+.+...+-..+ ..+|.... ..++.++|||+++
T Consensus 223 ~~l~~~~~~La~~l~~l~~-~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 223 LAFRRYEDRLAKSLAHVIN-ILDPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 4455444444444333332 146788888888877654443222222 23344444 3566788999865
No 183
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=55.06 E-value=26 Score=31.71 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=24.7
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeee
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~ 86 (621)
|+|||+|-...-++++|.+|+++.....+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~~~~~~~~~~ 30 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGEKLRRFKFEN 30 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCcEEEEEEEec
Confidence 689999999999999999996666555543
No 184
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=54.92 E-value=37 Score=30.91 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=25.6
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEEEeee
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~ 86 (621)
...++|||=|||.- .+++|.+|+++...+...
T Consensus 31 ~~lIVGiDPG~ttg-iAildL~G~~l~l~S~R~ 62 (138)
T PF04312_consen 31 RYLIVGIDPGTTTG-IAILDLDGELLDLKSSRN 62 (138)
T ss_pred CCEEEEECCCceeE-EEEEecCCcEEEEEeecC
Confidence 36899999999876 455799999998776653
No 185
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=54.30 E-value=80 Score=29.76 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=36.8
Q ss_pred eEEEEecCccceeeEEEcCCCCEE---EEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLL---GSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv---~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
.+||||-|++++=.++++.+|+-+ ......++ + ..+..+=+..+.+.+.+++++. ++..++|
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~----~---~~~~~~Rl~~I~~~l~~~i~~~-----~Pd~vai 67 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTP----S---DLDLPERLKQIYDGLSELIDEY-----QPDEVAI 67 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECC----C---CCCHHHHHHHHHHHHHHHHHHh-----CCCEEEE
Confidence 589999999999999999776632 22222221 1 1122222455566677777653 3345666
No 186
>PRK13410 molecular chaperone DnaK; Provisional
Probab=53.81 E-value=11 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=19.1
Q ss_pred CeEEEEecCccceeeEEEcCCCCE
Q 007010 55 SVFLGVDVGTGSARAGLFDESGKL 78 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~v 78 (621)
.++||||+|||+.++++++. |++
T Consensus 2 ~~viGIDlGTt~s~va~~~~-g~~ 24 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEG-GKP 24 (668)
T ss_pred CcEEEEEeCCCcEEEEEEEC-CeE
Confidence 36899999999999999974 543
No 187
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=53.60 E-value=11 Score=43.74 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=19.3
Q ss_pred CCCCeEEEEecCccceeeEEEcC
Q 007010 52 RSRSVFLGVDVGTGSARAGLFDE 74 (621)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~ 74 (621)
|....+||||+|||+.++++++.
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeC
Confidence 44456899999999999999874
No 188
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=52.97 E-value=21 Score=31.53 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (621)
Q Consensus 96 eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (621)
+.++++++++..+++.+++++.++++++|.+|-+|.+.
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~ 49 (117)
T cd02185 12 ENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 45789999999999999999989999999999998664
No 189
>PRK13411 molecular chaperone DnaK; Provisional
Probab=52.30 E-value=12 Score=43.54 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=18.7
Q ss_pred CeEEEEecCccceeeEEEcCCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (621)
..+||||+|||+.++++++. |+
T Consensus 2 ~~viGIDlGTt~s~va~~~~-g~ 23 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEG-GK 23 (653)
T ss_pred CcEEEEEeCcccEEEEEEEC-CE
Confidence 36899999999999999974 54
No 190
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=52.08 E-value=22 Score=31.39 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcCCC
Q 007010 96 EQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAATC 133 (621)
Q Consensus 96 eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~~~ 133 (621)
+.+.++++++..+++.+++++.++++++|.+|-+|.+.
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTE 49 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecC
Confidence 46789999999999999999999999999999997664
No 191
>PLN03184 chloroplast Hsp70; Provisional
Probab=51.77 E-value=15 Score=42.78 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=18.3
Q ss_pred CCeEEEEecCccceeeEEEcC
Q 007010 54 RSVFLGVDVGTGSARAGLFDE 74 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~ 74 (621)
+..++|||+|||+.++++++.
T Consensus 38 ~~~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEEC
Confidence 456899999999999999974
No 192
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=51.57 E-value=37 Score=31.57 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=19.9
Q ss_pred CeEEEEecCcc----ceeeEEEcCCCCEEEEEEe
Q 007010 55 SVFLGVDVGTG----SARAGLFDESGKLLGSASS 84 (621)
Q Consensus 55 ~~~lgIDiGTt----siKa~l~d~~g~vv~~~~~ 84 (621)
..+|+|-.|.. .+.++++|.+|+++...+.
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 35788888744 5899999999999988777
No 193
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=50.81 E-value=54 Score=30.33 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=34.8
Q ss_pred EEEEecCccceeeEEEcCCCCE---EEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEE
Q 007010 57 FLGVDVGTGSARAGLFDESGKL---LGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~v---v~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgi 129 (621)
+||||-|++++--++++.+++- +......++ ...+..+=+..+.+.+.+++++. ++..+++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~-------~~~~~~~Rl~~I~~~l~~li~~~-----~P~~vai 64 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTS-------SKDSLPERLKEIYEELEELIEEY-----NPDEVAI 64 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE----------S--HHHHHHHHHHHHHHHHHHH-------SEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECC-------CCCCHHHHHHHHHHHHHHHHHhh-----CCCEEEe
Confidence 6899999999999999976643 333333332 12233444556777777887764 3445666
No 194
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=50.64 E-value=28 Score=34.99 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--------HHHHHHHh-CCCCcCE--EEEecCCC-CCHHHHHHHHHhh----C---Cce
Q 007010 482 SEKQLALLYLATVQGIAYGTR--------HIVEHCNA-HGHKIDT--LLACGGLA-KNPLFLQQHADII----G---CPI 542 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r--------~~l~~l~~-~g~~~~~--I~~~GGga-~s~~w~Qi~Advl----g---~pV 542 (621)
+.+|. .++|-+.+.|.-... -++..+++ .+.+.++ |-+.|+.- +.|.+.+.+.+.+ + .+|
T Consensus 143 t~~d~-~~lr~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v 221 (243)
T PF03727_consen 143 TEEDR-QILRRICEAVSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEEGCKV 221 (243)
T ss_dssp -HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEE
T ss_pred CHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccccceE
Confidence 34443 355666666544322 23333332 2333223 44556653 6777777666654 3 477
Q ss_pred eeccCCCchhHHHHHHHHhhc
Q 007010 543 ILPRENESVLLGAAILGAVAA 563 (621)
Q Consensus 543 ~~~~~~e~~alGAA~lA~~a~ 563 (621)
......+++.+|||++|+++.
T Consensus 222 ~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 222 EFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp EEEE-SSTHHHHHHHHHHHHH
T ss_pred EEEEecCchHHHHHHHHHHhc
Confidence 777788999999999999863
No 195
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=49.44 E-value=73 Score=32.90 Aligned_cols=68 Identities=18% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhC---------Cceeecc-CCCchhHHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIG---------CPIILPR-ENESVLLGAAILGA 560 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg---------~pV~~~~-~~e~~alGAA~lA~ 560 (621)
.+++-.+..+...+-.+.. -..++.|++.|+.++.+.+.+.+-..+. .+|.... ..++.++|||.++.
T Consensus 224 ~~~~~~~~~la~~l~n~~~-~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~l 301 (303)
T PRK13310 224 AHVERYLDLLAICLGNILT-IVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLHL 301 (303)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHhh
Confidence 4444444444443333322 1467888887777765544443333321 2344444 34567889998763
No 196
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=49.41 E-value=1.2e+02 Score=27.25 Aligned_cols=21 Identities=38% Similarity=0.390 Sum_probs=18.2
Q ss_pred EEEecCccceeeEEEcCCCCE
Q 007010 58 LGVDVGTGSARAGLFDESGKL 78 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~v 78 (621)
||||+|+..+=.++-|..+.+
T Consensus 1 laiD~G~kriGvA~~d~~~~~ 21 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWT 21 (130)
T ss_pred CeEccCCCeEEEEEECCCCCE
Confidence 689999999999999887754
No 197
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=48.22 E-value=16 Score=41.83 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.4
Q ss_pred CeEEEEecCccceeeEEEcCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESG 76 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g 76 (621)
+.+||||+|||+..+++++.++
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~ 26 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG 26 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC
Confidence 4789999999999999999663
No 198
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=47.40 E-value=32 Score=35.10 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=32.6
Q ss_pred EEEecCccceeeEEEc-CCCCEEEEEEeeeccccCCCccccCHHHHHHH
Q 007010 58 LGVDVGTGSARAGLFD-ESGKLLGSASSPIQIWKEGDCIEQSSTDIWHA 105 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d-~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~ 105 (621)
+|||-||.+.-+.-|| +.|+++.....+... ++.+|.-+.+-
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rde------Vtk~p~iiv~i 43 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDE------VTKSPRIIVDI 43 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHH------hccCchHHHHH
Confidence 5899999999999888 579999888777652 56677665543
No 199
>PRK11678 putative chaperone; Provisional
Probab=47.12 E-value=15 Score=40.76 Aligned_cols=20 Identities=35% Similarity=0.748 Sum_probs=17.6
Q ss_pred EEEEecCccceeeEEEcCCCC
Q 007010 57 FLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~ 77 (621)
++|||+||||.-+++++ +|+
T Consensus 2 ~iGID~GTtNs~va~~~-~~~ 21 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR-DGK 21 (450)
T ss_pred eEEEecCccceeeEEee-CCc
Confidence 68999999999999998 554
No 200
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=46.67 E-value=53 Score=32.04 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=16.3
Q ss_pred EEEEecCccceeeEEEcCC
Q 007010 57 FLGVDVGTGSARAGLFDES 75 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~ 75 (621)
+|.||+|-|++|.+++|.+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 5789999999999999866
No 201
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=46.46 E-value=18 Score=41.98 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=18.3
Q ss_pred CeEEEEecCccceeeEEEcCC
Q 007010 55 SVFLGVDVGTGSARAGLFDES 75 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~ 75 (621)
..++|||+|||+..+++++..
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~ 47 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGD 47 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCC
Confidence 479999999999999999753
No 202
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=46.21 E-value=79 Score=32.45 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHH-HHHHHhh------CCceeecc-CCCchhHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFL-QQHADII------GCPIILPR-ENESVLLGAAILG 559 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~-Qi~Advl------g~pV~~~~-~~e~~alGAA~lA 559 (621)
.+++-.+..+...+..+... ..++.|++.|+.+..+.+. ++...+- ..+|.... ..+++++|||.++
T Consensus 212 ~~~~~~~~~la~~l~~l~~~-~dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 212 ALINRSAQAIARLIADLKAT-LDCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 44554554444444443321 4678888888876554433 3333332 12344444 3566788999876
No 203
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=45.68 E-value=14 Score=38.25 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.3
Q ss_pred EEEEecCccceeeEEEcCCCCEE
Q 007010 57 FLGVDVGTGSARAGLFDESGKLL 79 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv 79 (621)
++|||=|||.+|.++.+.+++.+
T Consensus 1 ~vGiDHGTtgi~f~~~~~~~~~~ 23 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGEKEPV 23 (326)
T ss_pred CccccCCCccEEEEEecCCcceE
Confidence 58999999999999999888654
No 204
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=44.53 E-value=21 Score=36.92 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILG 559 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA 559 (621)
+-+-|+.-..- + ..++......++|.++|...-.++..+.++- +|.++...+..+++..|-..+|
T Consensus 222 ~yLsGlLIG~E-l-~a~~~~~~~~~~v~LiG~~~L~~~Y~~AL~~-~G~~~~~~d~~~~~~~Gl~~ia 286 (287)
T PF05035_consen 222 SYLSGLLIGAE-L-AAARPYLWLGQPVALIGSGPLCALYARALAA-QGLPVRRVDADEAALAGLWAIA 286 (287)
T ss_dssp HHHHHHHHHHH-H-HHHCTTTSSSSEEEEEE-HHHHHHHHHHHHH-TT-EEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-H-HHHhhcccCCCeEEEEeCHHHHHHHHHHHHH-CCCCceeeCHHHHHHHHHHHHh
Confidence 55666654331 1 1222222356889999998777777666654 4889988776667666766554
No 205
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=44.00 E-value=95 Score=36.04 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcCEEEEecCCCCC--HHHHH------------HHHHhhCCceeeccCCCchhHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGH-KIDTLLACGGLAKN--PLFLQ------------QHADIIGCPIILPRENESVLLGAA 556 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~-~~~~I~~~GGga~s--~~w~Q------------i~Advlg~pV~~~~~~e~~alGAA 556 (621)
.+++-.+..+...+-.+.-. . +++.|++.||.+.. +.+.+ |..-+-+.||.+...++.+.+|||
T Consensus 247 ~~~~~~~~~lg~~~~nl~~~-~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa 325 (638)
T PRK14101 247 EAVECFCAILGTFAGNLALT-LGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITAEYPAFLGVS 325 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeCCChhHHHHH
Confidence 44444444444333333221 2 46778888888743 33321 223345799999999999999998
Q ss_pred HHHHhhccc
Q 007010 557 ILGAVAAKR 565 (621)
Q Consensus 557 ~lA~~a~G~ 565 (621)
..+...+..
T Consensus 326 ~~~~~~~~~ 334 (638)
T PRK14101 326 AILAEQLSN 334 (638)
T ss_pred HHHHHHhcc
Confidence 887766643
No 206
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=43.96 E-value=75 Score=33.79 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCC-chhHHHHHHHH
Q 007010 513 HKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENE-SVLLGAAILGA 560 (621)
Q Consensus 513 ~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e-~~alGAA~lA~ 560 (621)
..+++|+++||||. ++...+.+.++.- +++++++ +-|.|...++.
T Consensus 290 ~~~d~IiL~GGGA~--ll~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 290 NSFDRVIVTGGGAN--IFFDSLSHWYSDV-EKADESQFANVRGYYKYGE 335 (344)
T ss_pred CCCCEEEEECCcHH--HHHHHHHHHcCCe-EEcCChHHHHHHHHHHHHH
Confidence 36789999999996 5778888888854 4545444 55778777765
No 207
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=43.84 E-value=84 Score=34.17 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCC-CCHHHHHHHHHhhC
Q 007010 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG 539 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga-~s~~w~Qi~Advlg 539 (621)
-++|..+|.++..+-.+.. .+..++-|+++||.. +|+.+++.+.+-++
T Consensus 304 lA~~~f~yri~k~Iga~~a~L~G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 304 LAIKMYVHRIAKYIGSYIASLEGNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 5889999999888776654 455689999999999 88888877776654
No 208
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=43.54 E-value=18 Score=41.59 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=17.5
Q ss_pred EEEEecCccceeeEEEcCCCC
Q 007010 57 FLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~ 77 (621)
+||||+|||+.++++++. |+
T Consensus 2 viGIDlGtt~s~va~~~~-g~ 21 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG-GE 21 (595)
T ss_pred EEEEEeCcccEEEEEEEC-CE
Confidence 799999999999999974 44
No 209
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=43.51 E-value=58 Score=38.06 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=44.1
Q ss_pred CCCeEEEEecCcc-ceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 53 SRSVFLGVDVGTG-SARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 53 ~~~~~lgIDiGTt-siKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
+.+.++|+|-|.- ++|.+++|..|+++..... || +.|..-++.....+..++.+.+ -++.+||..+
T Consensus 328 ~~~~~lglDPg~rtG~k~Avvd~tGk~l~~~~I-yp---------~~p~~~~~~~~~~l~~l~~~~~---Ve~iaIGngT 394 (780)
T COG2183 328 KPKATLGLDPGFRTGCKVAVVDDTGKLLDTATI-YP---------HPPVNQSDKAEATLKDLIRKYK---VELIAIGNGT 394 (780)
T ss_pred CCcceeecCCccccccEEEEEcCCCceeceeEE-Ec---------CCCccchHHHHHHHHHHHHHhC---ceEEEEecCC
Confidence 3457899999964 4999999999999876543 22 1222235556666777766544 3567788754
No 210
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=43.43 E-value=87 Score=33.46 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=43.7
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeee-ccccCCCccccCHHHHHHHHH---HHHHHHHHHcCCCCCCEEEEEE
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPI-QIWKEGDCIEQSSTDIWHAIC---AAVDSACSLANVDGEEVKGVGF 129 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~-~~~~~~g~~eqd~~~~~~~~~---~~l~~~~~~~~~~~~~I~aIgi 129 (621)
+|.|..|+||+|+++||.+++++.+..... +... +.+.+.+.+. +.+.+++++.++...+|.+|+-
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~~~~~~~-------~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av~~ 71 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRHSVEELG-------RFKNVIDQFEFRKQVILQFLEEHGISISKLDAVVG 71 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecCCHHHhc-------ccccHHHHHHHHHHHHHHHHHHcCCCcccccEEEE
Confidence 789999999999999999998877654443 2111 2223333444 5566666666655667888843
No 211
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=43.17 E-value=16 Score=41.89 Aligned_cols=18 Identities=28% Similarity=0.789 Sum_probs=15.4
Q ss_pred EEEEecCccceeeEEEcC
Q 007010 57 FLGVDVGTGSARAGLFDE 74 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~ 74 (621)
+||||+|||++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 589999999999999874
No 212
>PRK07058 acetate kinase; Provisional
Probab=42.47 E-value=35 Score=36.81 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCC-CCHHHHHHHHHhhC
Q 007010 491 LATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG 539 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga-~s~~w~Qi~Advlg 539 (621)
+-++|..+|+++..+-.+.. .| .++.|+++||.. +|+.+++.+.+-+.
T Consensus 295 ~lA~d~f~yri~k~IGa~~a~Lg-~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 295 REALDLFALRIAGEIARLAATLG-GLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 36899999999988876654 44 689999999999 88888877776654
No 213
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=42.32 E-value=35 Score=35.85 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=26.8
Q ss_pred cCEEEEecCCC-CCHHHHH------HH------HHh-hCCceeeccCCCchhHHHHHHHH
Q 007010 515 IDTLLACGGLA-KNPLFLQ------QH------ADI-IGCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 515 ~~~I~~~GGga-~s~~w~Q------i~------Adv-lg~pV~~~~~~e~~alGAA~lA~ 560 (621)
-.-|++.||.+ ++..+.+ -+ .++ -.+||++...++.+.+|||..|.
T Consensus 255 ~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 255 RGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHH
T ss_pred CeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHh
Confidence 34699999987 4433322 11 123 35799999889999999998875
No 214
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=41.92 E-value=1.1e+02 Score=31.80 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=31.1
Q ss_pred CEEEEecCCC-------CCHHHHHHHHH-------hhCCceeeccCCCchhHHHHHHHH
Q 007010 516 DTLLACGGLA-------KNPLFLQQHAD-------IIGCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 516 ~~I~~~GGga-------~s~~w~Qi~Ad-------vlg~pV~~~~~~e~~alGAA~lA~ 560 (621)
.-|+++||.+ +..-|++-+.| +-.+||++.-.+....+|+|..+.
T Consensus 260 GGVyiaGGI~pril~~l~~s~Fr~~FedKGr~sa~l~~IPV~vi~~~~~gL~Gaa~~~~ 318 (320)
T COG0837 260 GGVYIAGGIVPRILEALKASGFRARFEDKGRMSAYLADIPVYVILHPQPGLLGAAAALR 318 (320)
T ss_pred CcEEEcCCchHhHHHHHhcchHHHHhhhcCchHHHHhhCCEEEEecCCchHHHHHHHhc
Confidence 3588999875 23444544433 345899998888888899987653
No 215
>PTZ00107 hexokinase; Provisional
Probab=41.53 E-value=1.5e+02 Score=32.99 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCC--CcCEEEEecCCC-CCHHHHHHHHH----hhC---Cceeecc
Q 007010 482 SEKQLALLYLATVQGIAYGTRHIVE-----HCNAHGH--KIDTLLACGGLA-KNPLFLQQHAD----IIG---CPIILPR 546 (621)
Q Consensus 482 ~~~~~~~~~rAvlEgia~~~r~~l~-----~l~~~g~--~~~~I~~~GGga-~s~~w~Qi~Ad----vlg---~pV~~~~ 546 (621)
+.+|. .++|-|.+.|.-.-.++.- .+++.+. ..-.|-+.|+.- +.|.+.+.+.. +++ .+|....
T Consensus 366 ~~~d~-~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~ 444 (464)
T PTZ00107 366 TDEDL-YTIRKICELVRGRAAQLAAAFIAAPAKKTRTVQGKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYL 444 (464)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 33443 3566666666544443322 2333343 223566778866 56665555444 443 4677777
Q ss_pred CCCchhHHHHHHHHhhc
Q 007010 547 ENESVLLGAAILGAVAA 563 (621)
Q Consensus 547 ~~e~~alGAA~lA~~a~ 563 (621)
..+++.+|||++|+++.
T Consensus 445 a~DGSg~GAAl~AA~~~ 461 (464)
T PTZ00107 445 ADDGSGKGAAIIAAMVA 461 (464)
T ss_pred ccCchHHHHHHHHHHhc
Confidence 88999999999999874
No 216
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=40.95 E-value=21 Score=41.15 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.7
Q ss_pred CeEEEEecCccceeeEEEcC
Q 007010 55 SVFLGVDVGTGSARAGLFDE 74 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~ 74 (621)
.++||||+|||+.++++++.
T Consensus 19 ~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CeEEEEEeccccEEEEEEEC
Confidence 47999999999999999863
No 217
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=40.77 E-value=48 Score=36.70 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=51.1
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCC-CCcCE-EEEe-cCCC-CCHHHHHHHHHhhC------
Q 007010 475 CGMTLDSSEKQLALLYLATVQGIAYGTRHIV-----EHCNAHG-HKIDT-LLAC-GGLA-KNPLFLQQHADIIG------ 539 (621)
Q Consensus 475 ~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l-----~~l~~~g-~~~~~-I~~~-GGga-~s~~w~Qi~Advlg------ 539 (621)
+|+...+ .++. .+++.+.+.|+=.-.++. -.+++.+ ....+ ++.. |+.- ..|.+.+++...+.
T Consensus 367 l~~~~~~-~~~r-~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg~~ 444 (474)
T KOG1369|consen 367 LGLETTT-TEDR-KLVREVCDVVSRRAARLAAAGIAAILNKTGELSRKRVTVGVDGSLYKNHPFFREYLKEALRELLGPS 444 (474)
T ss_pred hCCCcCc-HHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCceEEEeccchhHcCchHHHHHHHHHHHHhCCC
Confidence 4554433 2332 246677776654333221 1233333 22222 3333 4433 46888877766655
Q ss_pred CceeeccCCCchhHHHHHHHHhhcc
Q 007010 540 CPIILPRENESVLLGAAILGAVAAK 564 (621)
Q Consensus 540 ~pV~~~~~~e~~alGAA~lA~~a~G 564 (621)
+.|.+...++++.+|||++|+++..
T Consensus 445 ~~v~i~~s~dgSg~GAAL~Aav~~~ 469 (474)
T KOG1369|consen 445 IHVKLVLSEDGSGRGAALIAAVASR 469 (474)
T ss_pred ceEEEEECCCCccccHHHHHHHHhh
Confidence 5777778899999999999998754
No 218
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=40.74 E-value=32 Score=39.57 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.4
Q ss_pred CeEEEEecCccceeeEEEcCCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (621)
..++|||+|||+..++++. +|+
T Consensus 19 ~~viGIDlGTT~S~va~~~-~~~ 40 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT-NRK 40 (595)
T ss_pred ceEEEEEcCcccEEEEEEe-CCe
Confidence 5789999999999999885 443
No 219
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=40.67 E-value=99 Score=33.64 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCC-CCHHHHHHHHHhhC
Q 007010 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADIIG 539 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga-~s~~w~Qi~Advlg 539 (621)
-++|..+|+++..+-.+.. ....++-|+++||.. +|+.+++.+.+-+.
T Consensus 300 lA~d~f~yri~k~Iga~~a~L~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 300 LALDVFVYRLAKYIGSYAAALNGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 5889999999888776654 434789999999988 89999888777654
No 220
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=40.33 E-value=1.4e+02 Score=27.63 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=32.9
Q ss_pred EEEEecCccceeeEEEcCCCCEE---EEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHc
Q 007010 57 FLGVDVGTGSARAGLFDESGKLL---GSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv---~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
+||||-|++++=.++++.+++.+ ......++ + ..+..+=+..+.+.+.++++..
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~----~---~~~~~~rl~~I~~~l~~~i~~~ 58 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTS----S---DAPLPSRLKTIYDGLNEVIDQF 58 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEeeEEECC----C---CCCHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998544322 22222222 1 1223333555777777777653
No 221
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.61 E-value=85 Score=31.88 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=33.5
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHH
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDS 112 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~ 112 (621)
.|.||+|+..+-++++|++ ++++.-.+.++ -.+|+.+-+.+.+....
T Consensus 229 alvVd~GngHttaalvded-RI~gv~EHHT~--------~Lspekled~I~rf~~G 275 (342)
T COG4012 229 ALVVDYGNGHTTAALVDED-RIVGVYEHHTI--------RLSPEKLEDQIIRFVEG 275 (342)
T ss_pred eEEEEccCCceEEEEecCC-eEEEEeecccc--------cCCHHHHHHHHHHHHhc
Confidence 6889999999999999977 78776555443 34676665554444433
No 222
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=37.58 E-value=24 Score=42.09 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.1
Q ss_pred CeEEEEecCccceeeEEEcCCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESGK 77 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g~ 77 (621)
+|+||+||||+||=-+|+|.+-+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d~~ 23 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDDYK 23 (805)
T ss_pred CceeEEeecccceeEEEEecccc
Confidence 48999999999999999996643
No 223
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=37.51 E-value=1.3e+02 Score=28.59 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccccCCHHHHHHHhhcCC
Q 007010 501 TRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKRYSSLIEAMKAMNAAG 580 (621)
Q Consensus 501 ~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~~~s~~ea~~~~~~~~ 580 (621)
++.+++.|++.|+++. -+...+++++|.|...+....... .+-|+..=++|..
T Consensus 59 ~~~l~~yL~~~gldv~------------~~i~~i~~~l~~~~~~p~~~~~~~--------~~~g~~g~~~di~------- 111 (179)
T PF06757_consen 59 VKALLDYLESAGLDVY------------YYINQINDLLGLPPLNPTPSLSCS--------RGGGLNGFVDDIL------- 111 (179)
T ss_pred HHHHHHHHHHCCCCHH------------HHHHHHHHHHcCCcCCCCcccccc--------cCCCHHHHHHHHH-------
Confidence 4667777777777654 578999999999977654322111 1122211122221
Q ss_pred cEEcCCCChhhHHHHHHHH---HHHHHHHHHHHHH--HHHHHHh
Q 007010 581 QVIHPSKDPKVKKYHDAKY---LIFRELFEQQVSQ--RSIMAQA 619 (621)
Q Consensus 581 ~~~~P~~~~~~~~~y~~~y---~~y~~l~~~~~~~--~~~~~~~ 619 (621)
..-| ..+.++.|+++. +.|++++++++.- .++++.+
T Consensus 112 -~~lP--~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~~ 152 (179)
T PF06757_consen 112 -ALLP--RDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNAL 152 (179)
T ss_pred -HHCC--HHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHHH
Confidence 1247 667777777776 4666666666552 5555443
No 224
>PLN02405 hexokinase
Probab=37.50 E-value=1.6e+02 Score=33.09 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHhCCC--------CcCEEEEecCCC-CCHHHHHHHH----HhhC----Cceeecc
Q 007010 489 LYLATVQGIAYGTRHIVE-----HCNAHGH--------KIDTLLACGGLA-KNPLFLQQHA----DIIG----CPIILPR 546 (621)
Q Consensus 489 ~~rAvlEgia~~~r~~l~-----~l~~~g~--------~~~~I~~~GGga-~s~~w~Qi~A----dvlg----~pV~~~~ 546 (621)
++|-+.+.|+-.-.++.- .+++.+. +...|-+.|+.- +.|.+.+.+. ++++ .+|....
T Consensus 394 ~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~ 473 (497)
T PLN02405 394 VVVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEH 473 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEE
Confidence 556666666544333322 2333332 122466667765 5666655544 4454 3477766
Q ss_pred CCCchhHHHHHHHHhhc
Q 007010 547 ENESVLLGAAILGAVAA 563 (621)
Q Consensus 547 ~~e~~alGAA~lA~~a~ 563 (621)
..+++.+|||++|+.+.
T Consensus 474 a~DGSGvGAAl~AA~~~ 490 (497)
T PLN02405 474 SNDGSGIGAALLAASHS 490 (497)
T ss_pred ecCchHHHHHHHHHHHh
Confidence 78999999999999874
No 225
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=36.89 E-value=1.1e+02 Score=31.71 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCC-HHHHHHHHHhhC----------Cceeecc-CCCchhHHHHHH
Q 007010 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIG----------CPIILPR-ENESVLLGAAIL 558 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s-~~w~Qi~Advlg----------~pV~~~~-~~e~~alGAA~l 558 (621)
+.+++-.+..+...+..+.. -..++.|++.|+.++. +.+...+-..+. .+|.... ..+++++|||.+
T Consensus 229 ~~i~~~~~~~L~~~i~~~~~-~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~ 307 (318)
T TIGR00744 229 VDSYREVARWAGAGLADLAS-LFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADL 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHH
Confidence 35666666666555554433 2467888888887764 444443332221 2344544 345678899987
Q ss_pred HH
Q 007010 559 GA 560 (621)
Q Consensus 559 A~ 560 (621)
+.
T Consensus 308 ~~ 309 (318)
T TIGR00744 308 AR 309 (318)
T ss_pred HH
Confidence 64
No 226
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=36.71 E-value=1.1e+02 Score=33.56 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=18.9
Q ss_pred cCEEEEe-cCCCCCHHHH----HHHHHhhCCce
Q 007010 515 IDTLLAC-GGLAKNPLFL----QQHADIIGCPI 542 (621)
Q Consensus 515 ~~~I~~~-GGga~s~~w~----Qi~Advlg~pV 542 (621)
.+-|+++ ||||..++|+ .+.-.|+.+|+
T Consensus 193 ~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~ 225 (438)
T PRK00286 193 EDVLIVARGGGSLEDLWAFNDEAVARAIAASRI 225 (438)
T ss_pred CCEEEEecCCCCHHHhhccCcHHHHHHHHcCCC
Confidence 5666666 9999999997 44445555444
No 227
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=36.71 E-value=41 Score=35.19 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-cCE-EEEecCCCCCHHHHHHHHHhhCCceeeccCC-CchhHHHH
Q 007010 483 EKQLALLYLATVQGIAYGTRHIVEHCNA-HGHK-IDT-LLACGGLAKNPLFLQQHADIIGCPIILPREN-ESVLLGAA 556 (621)
Q Consensus 483 ~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~-~~~-I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~-e~~alGAA 556 (621)
-+++....+-.+++|.=.+|..|+.... .-.+ +++ ++++||||.-+-+-+.+++-++.||++.+++ ..+|+|+.
T Consensus 249 s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G 326 (342)
T COG1077 249 SEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTG 326 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccc
Confidence 3445444445566666666666665321 1111 345 9999999988888999999999999997754 34444443
No 228
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=36.69 E-value=28 Score=40.53 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=17.1
Q ss_pred eEEEEecCccceeeEEEcC
Q 007010 56 VFLGVDVGTGSARAGLFDE 74 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~ 74 (621)
.+||||+|||+.++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 5899999999999999863
No 229
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=36.45 E-value=57 Score=32.29 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCC-CCCHHHHHHHHHhh
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGL-AKNPLFLQQHADII 538 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGg-a~s~~w~Qi~Advl 538 (621)
|.+--...+.++++|.|++.|.+.+-+...||. ....+|-|+=||+.
T Consensus 163 alMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD~~ 210 (227)
T COG5012 163 ALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGADAY 210 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCCcc
Confidence 334444466899999999999887655555665 35555555555543
No 230
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=35.49 E-value=27 Score=36.74 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.5
Q ss_pred EEEecCccceeeEEEcCCCCEE
Q 007010 58 LGVDVGTGSARAGLFDESGKLL 79 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv 79 (621)
+|||+||+++++... .+|.++
T Consensus 5 ~giDlGt~~s~i~~~-~~~~~~ 25 (333)
T TIGR00904 5 IGIDLGTANTLVYVK-GRGIVL 25 (333)
T ss_pred eEEecCcceEEEEEC-CCCEEE
Confidence 899999999997764 455544
No 231
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=35.01 E-value=63 Score=29.69 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.5
Q ss_pred CeEEEEecCccceeeEEEcCCC
Q 007010 55 SVFLGVDVGTGSARAGLFDESG 76 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~~g 76 (621)
..+||||+||-.|=+++-|..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999999999999998766
No 232
>PRK13322 pantothenate kinase; Reviewed
Probab=34.71 E-value=32 Score=34.77 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~ 560 (621)
.++.|.+..+..+++.+++. +. .-.|+++||.++ +++..+.. +.+ .++-...|-..++.
T Consensus 184 G~~~~~~~~i~~~i~~~~~~~~~-~~~vilTGG~a~------~l~~~l~~-~~~--~~~LvL~GL~~~~~ 243 (246)
T PRK13322 184 GCLLMLRGFIESQLEQARELWGP-DFEIFLTGGDAP------LLADHLPQ-ARV--VPDLVFVGLAQYCP 243 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHhhCCC-CEE--CCCcHHHHHHHHHh
Confidence 56666666666666666653 32 336999999865 44555555 333 46666777766553
No 233
>PLN02914 hexokinase
Probab=34.55 E-value=2e+02 Score=32.15 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCC--------CcCEEEEecCCC-CCHHHHHHHHH----hhC---
Q 007010 481 SSEKQLALLYLATVQGIAYGTRHIVE-----HCNAHGH--------KIDTLLACGGLA-KNPLFLQQHAD----IIG--- 539 (621)
Q Consensus 481 ~~~~~~~~~~rAvlEgia~~~r~~l~-----~l~~~g~--------~~~~I~~~GGga-~s~~w~Qi~Ad----vlg--- 539 (621)
.+.++. +++|-+.+.|.-.-.++.- .+++.+. +.-.|-+.|+.- +.|.+.+.+.+ ++|
T Consensus 385 ~~~~d~-~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~ 463 (490)
T PLN02914 385 ASLSAR-RRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQDAVTELLGLEL 463 (490)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHHHHHHHHhCccc
Confidence 344553 3556666666544333322 2233332 123466667765 56666655554 443
Q ss_pred -CceeeccCCCchhHHHHHHHHhhc
Q 007010 540 -CPIILPRENESVLLGAAILGAVAA 563 (621)
Q Consensus 540 -~pV~~~~~~e~~alGAA~lA~~a~ 563 (621)
.+|......+++.+|||++|+.+.
T Consensus 464 ~~~i~i~~a~DGSGvGAAl~AA~~s 488 (490)
T PLN02914 464 SKNIAIEHTKDGSGIGAALLAATNS 488 (490)
T ss_pred CCcEEEEEccCchHHHHHHHHHHhh
Confidence 256676678999999999998764
No 234
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=33.70 E-value=1.6e+02 Score=32.41 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=20.1
Q ss_pred CcCEEEEe-cCCCCCHHHH----HHHHHhhCCce
Q 007010 514 KIDTLLAC-GGLAKNPLFL----QQHADIIGCPI 542 (621)
Q Consensus 514 ~~~~I~~~-GGga~s~~w~----Qi~Advlg~pV 542 (621)
.++-|+++ ||||..++|+ .+.-.|..+|+
T Consensus 187 ~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~ 220 (432)
T TIGR00237 187 ECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKI 220 (432)
T ss_pred CCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCC
Confidence 35666666 9999999997 44455555544
No 235
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=33.59 E-value=55 Score=33.92 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-hCCCCcCE--EEEecCCCCCHHHHHHHHHhhCCceeecc-C-CCchhHHHHH
Q 007010 491 LATVQGIAYGTRHIVEHCN-AHGHKIDT--LLACGGLAKNPLFLQQHADIIGCPIILPR-E-NESVLLGAAI 557 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~-~~g~~~~~--I~~~GGga~s~~w~Qi~Advlg~pV~~~~-~-~e~~alGAA~ 557 (621)
+.+++-+.-.+.+.++.+. +.+..+.+ +++.||+ .+++..-+|+.+|.+..+++ . .-..|+|+++
T Consensus 214 ~~i~~~~~~~m~~~i~~~~~~~g~~~~~~~lv~~GG~--g~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 214 EGIVRIANENMADAIREVSVERGYDPRDFPLVAFGGA--GPLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--EEEE-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 3677766666666666552 23455554 4444554 47999999999999866554 3 4566888875
No 236
>PRK12408 glucokinase; Provisional
Probab=32.84 E-value=1e+02 Score=32.61 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=30.6
Q ss_pred CcCE-EEEecCCCCC--HHHHH---HHH--------Hhh-CCceeeccCCCchhHHHHHHHH
Q 007010 514 KIDT-LLACGGLAKN--PLFLQ---QHA--------DII-GCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 514 ~~~~-I~~~GGga~s--~~w~Q---i~A--------dvl-g~pV~~~~~~e~~alGAA~lA~ 560 (621)
.++. |++.||.+.+ +.+.. +.+ ..+ ..||+.....++..+|||.++.
T Consensus 271 dPe~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~GAa~~~~ 332 (336)
T PRK12408 271 GARGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLGAASWYL 332 (336)
T ss_pred CCCceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHHHHHHHH
Confidence 5677 9999998743 44433 111 122 5778887766888999986543
No 237
>PRK13328 pantothenate kinase; Reviewed
Probab=32.69 E-value=1.8e+02 Score=29.58 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~ 560 (621)
.++-|.+..+..+++.+++.-...-.|+++||.++ +++..+..++.. .++-+..|-+.++.
T Consensus 192 G~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGGda~------~l~~~l~~~~~~--~p~LvL~GL~~i~~ 252 (255)
T PRK13328 192 GCLAAQAGLIERAWRDLAARWQAPVRLVLSGGAAD------AVAPALTVPHTR--HDNLVLLGLALIAA 252 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH------HHHhhCCCCCEE--CCCcHHHHHHHHHh
Confidence 55556666666666666553212347999999864 567777776655 35677788877664
No 238
>PRK07157 acetate kinase; Provisional
Probab=32.69 E-value=58 Score=35.30 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCCCCHH-HHHHHHHhhC
Q 007010 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLAKNPL-FLQQHADIIG 539 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga~s~~-w~Qi~Advlg 539 (621)
-++|..+|.++..+-.+.. .+..++.|+++||...|.. +++.+.+-++
T Consensus 297 lA~d~f~yri~k~Ig~~~a~L~G~vDaiVFTgGIGen~~~vr~~i~~~l~ 346 (400)
T PRK07157 297 FALDLYAQKIVDYLANYINKIGKKIDAIVFTAGVGENSAFVRELVINKIN 346 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCEEEECCccccCcHHHHHHHHhhcc
Confidence 5789999999888776654 4556899999999886554 7766666543
No 239
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=31.99 E-value=1.1e+02 Score=30.93 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=35.8
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHH
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVD 111 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~ 111 (621)
=++.||+|.+.+-++++ .+++|.+.-.+-+. ..+++.+++-+.+..+
T Consensus 168 ~~~~vniGN~HTlaa~v-~~~rI~GvfEHHT~--------~l~~~kL~~~l~~l~~ 214 (254)
T PF08735_consen 168 GIIVVNIGNGHTLAALV-KDGRIYGVFEHHTG--------MLTPEKLEEYLERLRD 214 (254)
T ss_pred CeEEEEeCCccEEEEEE-eCCEEEEEEecccC--------CCCHHHHHHHHHHHHc
Confidence 47899999999999999 68888877655554 4688888776555544
No 240
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=31.87 E-value=29 Score=36.61 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=17.6
Q ss_pred EEEecCccceeeEEEcCCCCEEE
Q 007010 58 LGVDVGTGSARAGLFDESGKLLG 80 (621)
Q Consensus 58 lgIDiGTtsiKa~l~d~~g~vv~ 80 (621)
+|||+||+++++... .+|.++.
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~ 27 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLN 27 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEc
Confidence 899999999999875 4665554
No 241
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=31.80 E-value=77 Score=34.29 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=41.7
Q ss_pred CCeEEEEecCccceeeEEEcCCCCEEEEE-Eeeecccc--CCC--ccccCHHHHHHHHHHHHHHHHHHc
Q 007010 54 RSVFLGVDVGTGSARAGLFDESGKLLGSA-SSPIQIWK--EGD--CIEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 54 ~~~~lgIDiGTtsiKa~l~d~~g~vv~~~-~~~~~~~~--~~g--~~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
+.|.+-||-|+|+.|+-+|--+-.....- ....+... .|| ...-||++.-+.+..+++.+.+..
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~v 134 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFV 134 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhC
Confidence 57999999999999999987432210000 00111121 555 356799999988888888876654
No 242
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=31.54 E-value=32 Score=39.64 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=16.2
Q ss_pred EEEEecCccceeeEEEcC
Q 007010 57 FLGVDVGTGSARAGLFDE 74 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~ 74 (621)
+||||+|||+..+++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 489999999999999974
No 243
>PRK13329 pantothenate kinase; Reviewed
Probab=31.52 E-value=1.9e+02 Score=29.22 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~ 560 (621)
.++-|++..+..+++.+++. +.+ -.|+++||.++ +++..+..++.+ .++-...|-..++.
T Consensus 185 G~~~g~~~~I~~~i~~~~~~~~~~-~~vilTGGda~------~l~~~l~~~~~~--~~~LvL~GL~~i~~ 245 (249)
T PRK13329 185 GGTQAIAGAVERMFRHLAQHCGAE-PECLLTGGAAW------KLAPSLTVPFEL--VDNLVLDGLLVIAA 245 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CEEEEECCCHH------HHHhhcCCCCEE--CCCcHHHHHHHHHh
Confidence 66667777777777777653 322 36999999864 677777777766 35677778776654
No 244
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=31.46 E-value=41 Score=36.46 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=23.1
Q ss_pred EEEEecCccceeeEEEcC-CCCEEEEEEee
Q 007010 57 FLGVDVGTGSARAGLFDE-SGKLLGSASSP 85 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~-~g~vv~~~~~~ 85 (621)
+|.|..|+||+|..|||. +.+++.+....
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~e 31 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGLVE 31 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeechhe
Confidence 689999999999999996 46676655443
No 245
>PRK07058 acetate kinase; Provisional
Probab=31.28 E-value=1.6e+02 Score=32.02 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=24.7
Q ss_pred CCCCeEEEEecCccceeeEEEcCCC---CEEEEEE
Q 007010 52 RSRSVFLGVDVGTGSARAGLFDESG---KLLGSAS 83 (621)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~g---~vv~~~~ 83 (621)
|+.+++|.|..|+||+|..|||.+. +++....
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G~ 35 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKGD 35 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecCCCCceEEEEEE
Confidence 4568999999999999999999533 4555443
No 246
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=30.87 E-value=1.2e+02 Score=32.48 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=48.1
Q ss_pred eEEEEecCcc--ceeeEEEcCCC-----CEEEEEEeeeccc------c--CCCccccCHH-------HHHHHHHHHHHHH
Q 007010 56 VFLGVDVGTG--SARAGLFDESG-----KLLGSASSPIQIW------K--EGDCIEQSST-------DIWHAICAAVDSA 113 (621)
Q Consensus 56 ~~lgIDiGTt--siKa~l~d~~g-----~vv~~~~~~~~~~------~--~~g~~eqd~~-------~~~~~~~~~l~~~ 113 (621)
++||+=.||| ++-+++++.+| +++...+.||+.. . .+.. -+++ ++=+...++++++
T Consensus 3 ~~iGlMSGTSlDGiD~alv~~~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~~--~~~~~l~~l~~~lg~~~a~av~~~ 80 (365)
T PRK09585 3 RYIGLMSGTSLDGVDAALVEIDGEGTKVELLASATVPYPDELRAALLALLQGGA--DELERLAELDTALGRLFAEAVNAL 80 (365)
T ss_pred eEEEeccccChhhhhEEEEEEeCCCcceEEeeeeEeeCCHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888886 56777887554 2555566777521 1 1111 1122 2344566778888
Q ss_pred HHHcCCCCCCEEEEEEcCC
Q 007010 114 CSLANVDGEEVKGVGFAAT 132 (621)
Q Consensus 114 ~~~~~~~~~~I~aIgis~~ 132 (621)
+++.++++.+|..||..+|
T Consensus 81 ~~~~~l~~~~id~IgsHGQ 99 (365)
T PRK09585 81 LAEAGLSPEDIDAIGSHGQ 99 (365)
T ss_pred HHHcCCCccCccEEEeCCc
Confidence 8888888999999999443
No 247
>PRK12397 propionate kinase; Reviewed
Probab=29.55 E-value=71 Score=34.68 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCC-CCHHHHHHHHHhh
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLA-KNPLFLQQHADII 538 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga-~s~~w~Qi~Advl 538 (621)
-++|..+|.++..+-.+-..-..++-|+++||.. +++..++.+.+-|
T Consensus 299 lA~d~f~yri~k~IGa~~a~lggvDaiVFTGGIGEns~~vR~~ic~~L 346 (404)
T PRK12397 299 LALTLFAERIRATIGSYIMQMGGLDALVFTGGIGENSARARSAVCHNL 346 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEECCchhhCCHHHHHHHHhhh
Confidence 5889999999888776654323689999999987 5666666655543
No 248
>PRK13327 pantothenate kinase; Reviewed
Probab=29.05 E-value=2.5e+02 Score=28.32 Aligned_cols=62 Identities=21% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhc
Q 007010 492 ATVQGIAYGTRHIVEHCNAH-GHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAA 563 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~-g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~ 563 (621)
.++-+++..+..+++.+++. +. .-+|+++||.++ ++++.+.. ... .++-...|-+.+|..+.
T Consensus 178 G~~~~~~~~I~~~i~~~~~~~~~-~~~vilTGG~A~------~l~~~l~~-~~~--~p~LvL~GL~~~a~~~~ 240 (242)
T PRK13327 178 GCDGAAVALIERSLQHAHRSLGQ-PVRLLVHGGGAP------PLLPLLPD-AEF--RPALVLDGLATWATAAA 240 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCEEEEECCCHH------HHHHhCCC-CEE--ccCcHHHHHHHHHHhcc
Confidence 56666666666666666543 32 336999999865 44555532 222 46777889888887654
No 249
>PRK09698 D-allose kinase; Provisional
Probab=29.03 E-value=2.6e+02 Score=28.75 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCH-H----HHHHHHHhh-------CCceeecc-CCCchhHHHHH
Q 007010 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP-L----FLQQHADII-------GCPIILPR-ENESVLLGAAI 557 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~-~----w~Qi~Advl-------g~pV~~~~-~~e~~alGAA~ 557 (621)
+...+.++..+..++.. ..++.|++.|+.++.. . +.+.+.+.+ ..+|.... ..+++++|||.
T Consensus 218 ~~~~~~la~~l~~li~~-----ldP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~ 292 (302)
T PRK09698 218 QSLLENLARAIATSINL-----FDPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAI 292 (302)
T ss_pred HHHHHHHHHHHHHHHHH-----hCCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHH
Confidence 35566666666666554 3578888888877653 2 222233222 12344544 35677899998
Q ss_pred HHH
Q 007010 558 LGA 560 (621)
Q Consensus 558 lA~ 560 (621)
++.
T Consensus 293 ~~~ 295 (302)
T PRK09698 293 LAH 295 (302)
T ss_pred HHH
Confidence 864
No 250
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=28.98 E-value=79 Score=34.37 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=21.9
Q ss_pred eEEEEecCccceeeEEEcCC--CCEEEEEE
Q 007010 56 VFLGVDVGTGSARAGLFDES--GKLLGSAS 83 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~--g~vv~~~~ 83 (621)
.+|.|..|+||+|..+||.+ .+++.+..
T Consensus 5 ~iLvlN~GSSSlKf~lf~~~~~~~~l~~G~ 34 (404)
T TIGR00016 5 KILVINAGSSSLKFALFDYTNGETVLLSGL 34 (404)
T ss_pred eEEEEECChHhheEEEEecCCCCceEEEEE
Confidence 38999999999999999953 45555443
No 251
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=28.91 E-value=1.6e+02 Score=32.73 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=47.2
Q ss_pred CCCeEEEEecCccceeeEEEc---CCCC-EEEEEEeeecccc-CCCc--cccCHHHHHHHHHHHHHHHHHHc
Q 007010 53 SRSVFLGVDVGTGSARAGLFD---ESGK-LLGSASSPIQIWK-EGDC--IEQSSTDIWHAICAAVDSACSLA 117 (621)
Q Consensus 53 ~~~~~lgIDiGTtsiKa~l~d---~~g~-vv~~~~~~~~~~~-~~g~--~eqd~~~~~~~~~~~l~~~~~~~ 117 (621)
.-+|-|.||.|+|+.|.-||- ++|+ ++....+.+.... .||. ...+|+..-..+..+++-+-+..
T Consensus 7 ~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~I 78 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHI 78 (501)
T ss_pred cceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhC
Confidence 347999999999999999997 5677 4554444444333 6664 56799988888888887776554
No 252
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=1.6e+02 Score=29.31 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=47.1
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeeccccCCCccccCHHH-HHHHHHHHHHHHHHHcCCCCCCEEEEEEcC
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTD-IWHAICAAVDSACSLANVDGEEVKGVGFAA 131 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~-~~~~~~~~l~~~~~~~~~~~~~I~aIgis~ 131 (621)
.||+.=....+-+.++ .+|++++..+..|-.-+..|+...|... -...+..+++..++++++...+|..|+.+-
T Consensus 4 alG~EGSANKlGvGiv-~~~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD~icyTK 78 (336)
T KOG2708|consen 4 ALGLEGSANKLGVGIV-RDGKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDIDCICYTK 78 (336)
T ss_pred EEecccccccceeeEE-ecceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEcC
Confidence 3444433333333444 4689998877776544455555544432 345577888888888888889999998854
No 253
>PLN02596 hexokinase-like
Probab=26.06 E-value=1.5e+02 Score=33.20 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=51.2
Q ss_pred EcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhCCC-C--cCEEEEecCCC-CCHHHHHH----HHHhhC--
Q 007010 475 CGMTLDSSEKQLALLYLATVQGIAYGTRHIVE-----HCNAHGH-K--IDTLLACGGLA-KNPLFLQQ----HADIIG-- 539 (621)
Q Consensus 475 ~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~-----~l~~~g~-~--~~~I~~~GGga-~s~~w~Qi----~Advlg-- 539 (621)
+|+.. ++.++. +++|.|.+.|.-.-.++.- .+++.|. . ...|=+.|+.- +.|.+.+. +..++|
T Consensus 382 l~~~~-~~~~d~-~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~ 459 (490)
T PLN02596 382 FGITD-STPMAR-EVVAEVCDIVAERGARLAGAGIVGIIKKLGRIENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSE 459 (490)
T ss_pred cCCCC-CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcc
Confidence 45532 334443 3667777777655444432 2334332 2 23466667765 56655544 445554
Q ss_pred --CceeeccCCCchhHHHHHHHHhhc
Q 007010 540 --CPIILPRENESVLLGAAILGAVAA 563 (621)
Q Consensus 540 --~pV~~~~~~e~~alGAA~lA~~a~ 563 (621)
.+|......+++.+|||++|+...
T Consensus 460 ~~~~i~~~~s~DGSG~GAAl~AA~~~ 485 (490)
T PLN02596 460 LSDNVVIEHSHGGSGAGALFLAACQT 485 (490)
T ss_pred cCCcEEEEEccCchhHHHHHHHHhhc
Confidence 256665678899999999998754
No 254
>PRK07157 acetate kinase; Provisional
Probab=25.82 E-value=2.5e+02 Score=30.57 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=21.8
Q ss_pred EEEEecCccceeeEEEcC-CCCEEEEEE
Q 007010 57 FLGVDVGTGSARAGLFDE-SGKLLGSAS 83 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~-~g~vv~~~~ 83 (621)
+|.|..|+||+|..|||. +.+++....
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASGL 32 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEEE
Confidence 899999999999999995 445665443
No 255
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=25.75 E-value=1.9e+02 Score=31.07 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=46.6
Q ss_pred CeEEEEecCcc--ceeeEEEcCCC---CEEEEEEeeeccc------c--CCCccccCHH-------HHHHHHHHHHHHHH
Q 007010 55 SVFLGVDVGTG--SARAGLFDESG---KLLGSASSPIQIW------K--EGDCIEQSST-------DIWHAICAAVDSAC 114 (621)
Q Consensus 55 ~~~lgIDiGTt--siKa~l~d~~g---~vv~~~~~~~~~~------~--~~g~~eqd~~-------~~~~~~~~~l~~~~ 114 (621)
+++||+=.||| ++-+++++-++ +++...+.||+.. . .+.. .+++ ++=+...+++++++
T Consensus 1 ~~~iGlMSGTSlDGiD~alv~~~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~~--~~~~~~~~l~~~lg~~~a~av~~~l 78 (364)
T PF03702_consen 1 QLVIGLMSGTSLDGIDAALVEFDGWRIELLAFHSFPYPSELRERLLALSRPAA--SSLDELCELDRELGELFADAVNQFL 78 (364)
T ss_dssp -EEEEEEE-TT-SEEEEEEEEESSSSEEEEEEEEEE--HHHHHHHHHCCSTTC--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeccCCHHhhhheeEEEECCceEEeeeEeecCCHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999987 68889988654 5666777777621 1 1211 1122 23344667778888
Q ss_pred HHcCCCCCCEEEEEEcCCCceEEe
Q 007010 115 SLANVDGEEVKGVGFAATCSLVAV 138 (621)
Q Consensus 115 ~~~~~~~~~I~aIgis~~~~~v~v 138 (621)
++.++++.+|..||. ||--++
T Consensus 79 ~~~~i~~~~I~~Igs---HGQTv~ 99 (364)
T PF03702_consen 79 KKNGISPSDIDLIGS---HGQTVF 99 (364)
T ss_dssp HHCT--GGGEEEEEE-----EEEE
T ss_pred HHcCCCcccccEEEe---CCccee
Confidence 888888899999999 554333
No 256
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=25.53 E-value=1.1e+02 Score=29.09 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=34.9
Q ss_pred EEEEecCCCCCHHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhccc
Q 007010 517 TLLACGGLAKNPLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAKR 565 (621)
Q Consensus 517 ~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G~ 565 (621)
++.+.|||+|.-....++.-+...-+.. +.--++..||.+.|.+++|.
T Consensus 1 ~Lvl~GGG~rG~~~~Gvl~~L~e~~~~~-d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 1 NLVFEGGGAKGIAYIGALKALEEAGILK-KRVAGTSAGAITAALLALGY 48 (194)
T ss_pred CeEEcCchHHHHHHHHHHHHHHHcCCCc-ceEEEECHHHHHHHHHHcCC
Confidence 3678999999888777777665443322 44457788999999999885
No 257
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=25.42 E-value=3.3e+02 Score=28.41 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCC-HHHHHHHHHhhCCceeeccCCCchhHHHHHHHHhhcc
Q 007010 491 LATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKN-PLFLQQHADIIGCPIILPRENESVLLGAAILGAVAAK 564 (621)
Q Consensus 491 rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s-~~w~Qi~Advlg~pV~~~~~~e~~alGAA~lA~~a~G 564 (621)
.-+++-.+..+...++.+. ......+|.+.||.+++ +.|..++=..+..|. ...+..||.++|....+
T Consensus 226 ~~Il~~aa~~i~~~~~~l~-~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~-----~~D~~~GA~~~A~~~~~ 294 (301)
T COG2971 226 IRILKEAAAYIATLLEALS-IFNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP-----IGDALSGAVLLALGRFG 294 (301)
T ss_pred HHHHHHHHHHHHHHHHHHh-cccCCceEEEeccccccchhhHHHHHHHhcCCc-----cccHHHHHHHHHHHhhh
Confidence 3677778888888888875 22356789999999977 888877777666655 23346788888866544
No 258
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=25.23 E-value=55 Score=34.57 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.4
Q ss_pred EEEEecCccceee
Q 007010 57 FLGVDVGTGSARA 69 (621)
Q Consensus 57 ~lgIDiGTtsiKa 69 (621)
.+|||+||++++.
T Consensus 6 ~~giDlGt~~~~i 18 (335)
T PRK13929 6 EIGIDLGTANILV 18 (335)
T ss_pred eEEEEcccccEEE
Confidence 4899999999973
No 259
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=25.10 E-value=57 Score=38.10 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=19.3
Q ss_pred CCCCeEEEEecCccceeeEEEcCC
Q 007010 52 RSRSVFLGVDVGTGSARAGLFDES 75 (621)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~~ 75 (621)
|.++|+||+|||+.|+-=+++..+
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~d 24 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDD 24 (1088)
T ss_pred CCcceEEEeeccccceeeEEeecc
Confidence 456899999999999987666543
No 260
>PRK13328 pantothenate kinase; Reviewed
Probab=24.99 E-value=68 Score=32.61 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.0
Q ss_pred EEEEecCccceeeEEEcCCCCEEE
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLG 80 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~ 80 (621)
+|-||+|-|++|-+++|.+++++.
T Consensus 3 ~LliDiGNTriKwa~~~~~~~~~~ 26 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAGRPWVH 26 (255)
T ss_pred EEEEEeCccceeEEEEcCCCceee
Confidence 688999999999999996555543
No 261
>PRK13326 pantothenate kinase; Reviewed
Probab=24.70 E-value=2.8e+02 Score=28.30 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=22.6
Q ss_pred eEEEEecCccceeeEEEcCCCCEEEEEEeee
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLGSASSPI 86 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~ 86 (621)
..|.||+|-|++|.++||. ++++...+.++
T Consensus 7 ~~L~IDiGNT~ik~glf~~-~~l~~~~r~~t 36 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD-NKMQIFCKLKT 36 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC-CEEEEEEEecc
Confidence 5789999999999999994 46665433433
No 262
>PRK12379 propionate/acetate kinase; Provisional
Probab=24.41 E-value=2.5e+02 Score=30.45 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCCcCEEEEecCCC-CCHHHHHHHHHhh
Q 007010 492 ATVQGIAYGTRHIVEHCNA-HGHKIDTLLACGGLA-KNPLFLQQHADII 538 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~-~g~~~~~I~~~GGga-~s~~w~Qi~Advl 538 (621)
-++|..+|+++..+-.+-- .+ .++-|+++||.. +++..++.+.+-|
T Consensus 295 lA~d~f~yri~k~IGa~~a~L~-~vDaIVFTGGIGen~~~vR~~i~~~L 342 (396)
T PRK12379 295 LAIKTFVHRIARHIAGHAASLH-RLDGIIFTGGIGENSSLIRRLVMEHL 342 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCCEEEECCccccCcHHHHHHHHhhh
Confidence 5889999999888776644 46 789999999987 4566666666554
No 263
>PRK12440 acetate kinase; Reviewed
Probab=24.07 E-value=2.8e+02 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCCCeEEEEecCccceeeEEEcC-CCCEEEEEE
Q 007010 52 RSRSVFLGVDVGTGSARAGLFDE-SGKLLGSAS 83 (621)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~-~g~vv~~~~ 83 (621)
|+.+++|.|..|+||+|..|||. ..+++.+..
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~ 33 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGL 33 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEEE
Confidence 67789999999999999999995 445555443
No 264
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=2.1e+02 Score=30.45 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHH----HHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhh---CCceeeccCCCchhHHHHHHHHhhcc
Q 007010 492 ATVQGIAYGTRH----IVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADII---GCPIILPRENESVLLGAAILGAVAAK 564 (621)
Q Consensus 492 AvlEgia~~~r~----~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advl---g~pV~~~~~~e~~alGAA~lA~~a~G 564 (621)
.+.+.++..+-+ .++.+......+..++++||.|.|..+...+.+.. |+....+. ..-..=-++|+|..|+-
T Consensus 279 ~lQ~tv~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp-~~lCsDNgiMIaw~Gie 357 (405)
T KOG2707|consen 279 SLQRTVFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPP-PSLCSDNGIMIAWTGIE 357 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCC-hhhcCCcchhhhhHHHH
Confidence 555555544332 23333323445678999999999999998888874 44444433 22222234567666654
Q ss_pred cc
Q 007010 565 RY 566 (621)
Q Consensus 565 ~~ 566 (621)
.+
T Consensus 358 ~l 359 (405)
T KOG2707|consen 358 ML 359 (405)
T ss_pred HH
Confidence 33
No 265
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=23.66 E-value=4.7e+02 Score=24.22 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=33.1
Q ss_pred CeEEEEecCccc-----eeeEEEcCCCCEEEEEEeeeccccCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 007010 55 SVFLGVDVGTGS-----ARAGLFDESGKLLGSASSPIQIWKEGDCIEQSSTDIWHAICAAVDSACSLANV 119 (621)
Q Consensus 55 ~~~lgIDiGTts-----iKa~l~d~~g~vv~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~ 119 (621)
+-+|.||+.|++ +-=++++ +++++...-...+ -..++-|=-..+...|+.++++.+.
T Consensus 2 ~~~LslD~STs~~~~~gTG~A~~~-~~~~~~~si~~~~-------k~Ks~~ER~k~ias~Lk~ii~~~d~ 63 (159)
T PF07066_consen 2 KKVLSLDFSTSSKKGEGTGWAFFK-GSDLVVGSIKAKH-------KSKSFFERAKSIASELKTIIQKYDL 63 (159)
T ss_pred CeeEEEEEecccCCCCCceeEEec-CCeEEEeeeeecC-------cccCHHHHHHHHHHHHHHHHHHhCC
Confidence 458999999998 7778886 4554333221221 0123333334566677777776543
No 266
>PRK00292 glk glucokinase; Provisional
Probab=23.29 E-value=1.8e+02 Score=30.30 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCcC-EEEEecCCCC-C-HHHHH-----H------HHHh-hCCceeeccCCCchhHHHHHHHH
Q 007010 513 HKID-TLLACGGLAK-N-PLFLQ-----Q------HADI-IGCPIILPRENESVLLGAAILGA 560 (621)
Q Consensus 513 ~~~~-~I~~~GGga~-s-~~w~Q-----i------~Adv-lg~pV~~~~~~e~~alGAA~lA~ 560 (621)
..++ .|++.||.+. + +.+.. - ..+. -..||+.....++..+|||.++.
T Consensus 252 ~~P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa~~~~ 314 (316)
T PRK00292 252 LGARGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAGAYLR 314 (316)
T ss_pred hcCCceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHHHHHh
Confidence 3566 7888888873 2 33222 1 2223 25777766667888999998764
No 267
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=23.20 E-value=43 Score=35.34 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=16.5
Q ss_pred EEEEecCccceeeEEEcCCCCEEEE
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGS 81 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~ 81 (621)
-+|||+||+++++.+- .+|.++.+
T Consensus 3 ~igIDLGT~~t~i~~~-~~Giv~~e 26 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVK-GKGIVLNE 26 (326)
T ss_dssp EEEEEE-SSEEEEEET-TTEEEEEE
T ss_pred ceEEecCcccEEEEEC-CCCEEEec
Confidence 5899999999988543 46655554
No 268
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=23.10 E-value=1.9e+02 Score=29.53 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=45.8
Q ss_pred CeEEccccCCCCCCCCCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCCc--CEEEEecCC
Q 007010 451 DIHVLPDFHGNRSPIADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEH----CNAHGHKI--DTLLACGGL 524 (621)
Q Consensus 451 gl~flP~l~Ger~P~~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~----l~~~g~~~--~~I~~~GGg 524 (621)
+|.||| .|||+|..|. +.|+...- .+.+ +-+.-.|-..+.+++.++. +++.|... =.|=|+||.
T Consensus 185 DVRfLP------NP~y~peLRp-~tG~d~~V--~dYv-~~~~e~~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTGGq 254 (286)
T COG1660 185 DVRFLP------NPHYDPELRP-LTGLDKPV--ADYV-MSQPEVEEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTGGQ 254 (286)
T ss_pred EecccC------CCccccccCc-CCCCChhH--HHHH-HcChHHHHHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCCCc
Confidence 355677 6999999885 45554422 1111 0112222233444444443 34445432 136678999
Q ss_pred CCCHHHHHHHHHhhCC
Q 007010 525 AKNPLFLQQHADIIGC 540 (621)
Q Consensus 525 a~s~~w~Qi~Advlg~ 540 (621)
-||-.+.+-+|..|..
T Consensus 255 HRSV~iae~La~~l~~ 270 (286)
T COG1660 255 HRSVYIAEQLAEYLRA 270 (286)
T ss_pred cchHHHHHHHHHHHHh
Confidence 9999999888888764
No 269
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=22.96 E-value=1.9e+02 Score=29.18 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=51.0
Q ss_pred EEEEecC-CCCC---HHHHHHHHHhhCCceeeccCCC-chhHHHH-HHHHhhccccCCHHHHHHHhhcCCcEEcCCCChh
Q 007010 517 TLLACGG-LAKN---PLFLQQHADIIGCPIILPRENE-SVLLGAA-ILGAVAAKRYSSLIEAMKAMNAAGQVIHPSKDPK 590 (621)
Q Consensus 517 ~I~~~GG-ga~s---~~w~Qi~Advlg~pV~~~~~~e-~~alGAA-~lA~~a~G~~~s~~ea~~~~~~~~~~~~P~~~~~ 590 (621)
.+.-+|| +.+. ....-+++.-+|.||..-.... ++-.|.+ ++...++..-.+.+++.+.+.+..-.|-+ .+.
T Consensus 5 D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~--~~~ 82 (252)
T PF00591_consen 5 DICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLF--APN 82 (252)
T ss_dssp EEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEE--HHH
T ss_pred EEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEec--chh
Confidence 4677888 6666 6667777778899998755433 3345665 67766666666888877777666666666 444
Q ss_pred hHHHHHHHHHH
Q 007010 591 VKKYHDAKYLI 601 (621)
Q Consensus 591 ~~~~y~~~y~~ 601 (621)
.+...+.+...
T Consensus 83 ~~p~~~~l~~~ 93 (252)
T PF00591_consen 83 FHPALKRLAPV 93 (252)
T ss_dssp HSGGHHHHHHH
T ss_pred cCcchHHHHHH
Confidence 44444444333
No 270
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.64 E-value=3.7e+02 Score=28.18 Aligned_cols=73 Identities=21% Similarity=0.181 Sum_probs=42.6
Q ss_pred CCCCCceeEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCEEE--EecCCC---CCHHHH---HHHHH
Q 007010 466 ADPKSKGIICGMTLDSSEKQLALLYLATVQGIAYGTRHIVEHCNA-HGHKIDTLL--ACGGLA---KNPLFL---QQHAD 536 (621)
Q Consensus 466 ~d~~arg~f~Gl~~~~~~~~~~~~~rAvlEgia~~~r~~l~~l~~-~g~~~~~I~--~~GGga---~s~~w~---Qi~Ad 536 (621)
+|....-.|+.+..+|+-.++ ++| .+++-.+.+.+ .-...++|. +.|||+ ++.+|. |-+||
T Consensus 142 yd~~~n~g~v~vg~s~dTa~F------av~----~i~~WW~~~g~~~yp~a~~lli~~D~GgsN~~r~r~wk~~L~~la~ 211 (311)
T PF07592_consen 142 YDPAANEGWVSVGTSHDTADF------AVD----SIRRWWEEMGKARYPHAKRLLITADNGGSNGSRRRLWKKRLQELAD 211 (311)
T ss_pred EeccCCeEEEEEecCcccHHH------HHH----HHHHHHHHhChhhcCchheEEEeccCCCCccchhHHHHHHHHHHHH
Confidence 355555556555555433343 233 33566666633 212355644 446765 567775 77899
Q ss_pred hhCCceeeccCC
Q 007010 537 IIGCPIILPREN 548 (621)
Q Consensus 537 vlg~pV~~~~~~ 548 (621)
-+|+.|.++.-+
T Consensus 212 ~~gl~I~v~hyP 223 (311)
T PF07592_consen 212 ETGLSIRVCHYP 223 (311)
T ss_pred HhCCEEEEEEcC
Confidence 999999987644
No 271
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=22.48 E-value=57 Score=34.20 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.9
Q ss_pred EEEecCccceeeEEE
Q 007010 58 LGVDVGTGSARAGLF 72 (621)
Q Consensus 58 lgIDiGTtsiKa~l~ 72 (621)
+|||+||+++|+...
T Consensus 11 vgiDlGt~~t~i~~~ 25 (335)
T PRK13930 11 IGIDLGTANTLVYVK 25 (335)
T ss_pred eEEEcCCCcEEEEEC
Confidence 899999999999875
No 272
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=22.11 E-value=2.5e+02 Score=31.47 Aligned_cols=30 Identities=20% Similarity=0.056 Sum_probs=25.6
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeec
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQ 87 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~ 87 (621)
.+.||||+.|+-.++++ +++++...+.|+.
T Consensus 134 ~lviDIGGGStEl~~~~-~~~~~~~~Sl~lG 163 (496)
T PRK11031 134 RLVVDIGGASTELVTGT-GAQATSLFSLSMG 163 (496)
T ss_pred EEEEEecCCeeeEEEec-CCceeeeeEEecc
Confidence 67899999999999997 6778888888774
No 273
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=21.93 E-value=76 Score=25.89 Aligned_cols=33 Identities=33% Similarity=0.500 Sum_probs=23.0
Q ss_pred HHHHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCC
Q 007010 265 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGT 313 (621)
Q Consensus 265 ~~ll~~~gi~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~ 313 (621)
.++|+.++|.+. +||+|. .++-+|+.+|...|=
T Consensus 27 ~~vLk~l~i~~~---qLPkI~-------------~~DPva~~lgak~Gd 59 (80)
T COG2012 27 KEVLKELGIEPE---QLPKIK-------------ASDPVAKALGAKPGD 59 (80)
T ss_pred HHHHHHhCCCHH---HCCccc-------------ccChhHHHccCCCCc
Confidence 468999999984 568764 455566777766653
No 274
>PTZ00288 glucokinase 1; Provisional
Probab=21.22 E-value=3.9e+02 Score=29.18 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=32.6
Q ss_pred CCcCEEEEecCCC-CCHHHHH---------H-----H---HHhh-CCceee-ccCCCchhHHHHHHHHhh
Q 007010 513 HKIDTLLACGGLA-KNPLFLQ---------Q-----H---ADII-GCPIIL-PRENESVLLGAAILGAVA 562 (621)
Q Consensus 513 ~~~~~I~~~GGga-~s~~w~Q---------i-----~---Advl-g~pV~~-~~~~e~~alGAA~lA~~a 562 (621)
..++.|++.||++ ++..+.+ - + .+.+ .+||++ ....+...+|||..|...
T Consensus 322 l~P~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~ 391 (405)
T PTZ00288 322 FLPLTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQL 391 (405)
T ss_pred HCCCEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHh
Confidence 3566688888764 4432221 1 1 3343 589988 778888999999888653
No 275
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=21.16 E-value=4.5e+02 Score=27.41 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=26.8
Q ss_pred CcCEEEEecCCCCCHHHHHHHHHhhCC---ceeeccCCCch-hHH
Q 007010 514 KIDTLLACGGLAKNPLFLQQHADIIGC---PIILPRENESV-LLG 554 (621)
Q Consensus 514 ~~~~I~~~GGga~s~~w~Qi~Advlg~---pV~~~~~~e~~-alG 554 (621)
..++|+++||||. ++...+.+.++. .+.+++.++-+ +.|
T Consensus 272 ~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G 314 (318)
T PF06406_consen 272 DIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRG 314 (318)
T ss_dssp S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHH
T ss_pred cCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHH
Confidence 5688999999986 888888888874 67777766643 444
No 276
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=20.85 E-value=3.4e+02 Score=28.03 Aligned_cols=30 Identities=30% Similarity=0.164 Sum_probs=25.1
Q ss_pred EEEEecCccceeeEEEcCCCCEEEEEEeeec
Q 007010 57 FLGVDVGTGSARAGLFDESGKLLGSASSPIQ 87 (621)
Q Consensus 57 ~lgIDiGTtsiKa~l~d~~g~vv~~~~~~~~ 87 (621)
.+.+|+|+.|+..++++ +++++...+.|+.
T Consensus 127 ~~v~DiGGGSte~~~~~-~~~~~~~~Sl~lG 156 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK-DFEPGEGVSLPLG 156 (300)
T ss_pred cEEEEecCCeEEEEEec-CCCEeEEEEEccc
Confidence 37899999999999987 5678887788774
No 277
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=20.75 E-value=2.3e+02 Score=29.10 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCH-----HHH---HHHHHh-hCCceeecc----CCCchhHHH
Q 007010 489 LYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNP-----LFL---QQHADI-IGCPIILPR----ENESVLLGA 555 (621)
Q Consensus 489 ~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~-----~w~---Qi~Adv-lg~pV~~~~----~~e~~alGA 555 (621)
.|+++.|++.- .+...+. ...++-|+++|-.++-+ +-. ..++.. ++..|...+ .+| +|-||
T Consensus 253 ~~~~l~e~vvK---~v~tllp--s~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~Ke-aA~Ga 326 (374)
T COG2441 253 TYNALIEGVVK---DVFTLLP--STYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKE-AAEGA 326 (374)
T ss_pred HHHHHHHHHHH---HHHHhcc--ccCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhh-hccch
Confidence 37899998874 4444333 24567799999988732 222 222222 445555433 233 47899
Q ss_pred HHHH-HhhccccCCHHH
Q 007010 556 AILG-AVAAKRYSSLIE 571 (621)
Q Consensus 556 A~lA-~~a~G~~~s~~e 571 (621)
|++| +++-|.|+-+-+
T Consensus 327 AiiAnaiAGG~yrelvd 343 (374)
T COG2441 327 AIIANAIAGGLYRELVD 343 (374)
T ss_pred hhhhhhhcchhHHHHHH
Confidence 9887 455677754433
No 278
>PRK08557 hypothetical protein; Provisional
Probab=20.73 E-value=86 Score=34.35 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=41.2
Q ss_pred cceeEEcCcchHHHHHHHHccC---hhHHh----hhCCCCCCCChHHHHHHHHHhcchhHHhhccee
Q 007010 155 RNIIVWMDHRAVKQAEKINSRN---SPVLQ----YCGGAVSPEMQPPKLLWVKENLQESWSMVFRWM 214 (621)
Q Consensus 155 ~p~i~W~D~Ra~~~~~~l~~~~---~~~~~----~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~l 214 (621)
.|+..|.+. +..+-+.+.. ..+|. ..|+.+-|......+.-+++++||.|++...++
T Consensus 317 ~PI~~Wt~~---dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~k~~~~l 380 (417)
T PRK08557 317 FPILDWNSL---DIWSYIYLNDILYNPLYDKGFERIGCYLCPSALNSEFLRVKELYPELFNRWVKYL 380 (417)
T ss_pred EecccCCHH---HHHHHHHHcCCCCCchhhCCCCCCCccCCCCccHHHHHHHHHHCHHHHHHHHHHH
Confidence 688889874 3333344332 44554 489988888888899999999999999876554
No 279
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=20.61 E-value=2.6e+02 Score=30.34 Aligned_cols=55 Identities=18% Similarity=0.049 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCEEEEecCCCCCHHHHHHHHHhhCCceeeccC
Q 007010 488 LLYLATVQGIAYGTRHIVEHCNAHGHKIDTLLACGGLAKNPLFLQQHADIIGCPIILPRE 547 (621)
Q Consensus 488 ~~~rAvlEgia~~~r~~l~~l~~~g~~~~~I~~~GGga~s~~w~Qi~Advlg~pV~~~~~ 547 (621)
.+.+.+..|+...+...+..+++...+++-|+.+||.. .-+.|-.+++|+.....
T Consensus 67 ~~~~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-----~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 67 GLLRDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-----PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-----HHHHHHHcCCCceEEEe
Confidence 35668888898888888888887655789999999987 55778889999988443
No 280
>PRK12379 propionate/acetate kinase; Provisional
Probab=20.55 E-value=1.4e+02 Score=32.37 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=23.8
Q ss_pred CeEEEEecCccceeeEEEcC-CCCEEEEEEe
Q 007010 55 SVFLGVDVGTGSARAGLFDE-SGKLLGSASS 84 (621)
Q Consensus 55 ~~~lgIDiGTtsiKa~l~d~-~g~vv~~~~~ 84 (621)
+++|.|..|+||+|..+||. +.+++.....
T Consensus 5 ~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~v 35 (396)
T PRK12379 5 PVVLVINCGSSSIKFSVLDASDCEVLMSGIA 35 (396)
T ss_pred CEEEEEECChHhheEEEEECCCCceEEEEEE
Confidence 68999999999999999995 4456654443
No 281
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.52 E-value=3.4e+02 Score=27.99 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCEEEEec-CCCCC-HHHHHHHHHhhC---------Cceeecc-C-CCchhHHHHHH
Q 007010 492 ATVQGIAYGTRHIVEHCNAHGHKIDTLLACG-GLAKN-PLFLQQHADIIG---------CPIILPR-E-NESVLLGAAIL 558 (621)
Q Consensus 492 AvlEgia~~~r~~l~~l~~~g~~~~~I~~~G-Gga~s-~~w~Qi~Advlg---------~pV~~~~-~-~e~~alGAA~l 558 (621)
.++|-.+..+...+-.+... ..++.|++.| |.+.. +.+.+.+...+. .++.... . .++..+||+++
T Consensus 226 ~~~~~~~~~la~~ianl~~~-~~P~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~ 304 (314)
T COG1940 226 EVIERAADYLARGLANLINL-LDPEVIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAALL 304 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCCeEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHHHH
Confidence 56666666666665555432 4678888888 65543 566655554321 1222222 1 45667788877
Q ss_pred HHh
Q 007010 559 GAV 561 (621)
Q Consensus 559 A~~ 561 (621)
+..
T Consensus 305 ~~~ 307 (314)
T COG1940 305 ALL 307 (314)
T ss_pred HHH
Confidence 643
No 282
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=20.22 E-value=1.8e+02 Score=26.74 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=20.9
Q ss_pred eEEEEecCccceeeEEEcCCCCEEE
Q 007010 56 VFLGVDVGTGSARAGLFDESGKLLG 80 (621)
Q Consensus 56 ~~lgIDiGTtsiKa~l~d~~g~vv~ 80 (621)
.+++||+|+-|.--++++.+++.+.
T Consensus 2 ii~sIDiGikNlA~~iie~~~~~i~ 26 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFEGNKIR 26 (143)
T ss_pred eEEEEecCCCceeEEEEEcCCCeEE
Confidence 5899999999999999997665443
No 283
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=20.22 E-value=60 Score=34.63 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=33.5
Q ss_pred cCEEEEecCCCCCHHHHHHHHHhhCC--c------eee--cc-CCCchhHHHHHHHHh
Q 007010 515 IDTLLACGGLAKNPLFLQQHADIIGC--P------IIL--PR-ENESVLLGAAILGAV 561 (621)
Q Consensus 515 ~~~I~~~GGga~s~~w~Qi~Advlg~--p------V~~--~~-~~e~~alGAA~lA~~ 561 (621)
.++|+++||+|+-+-+.+.+.+-++. | +.+ .. ...++-+|++++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 46799999999999999888888762 2 222 22 234556699988854
No 284
>PRK12397 propionate kinase; Reviewed
Probab=20.07 E-value=3.8e+02 Score=29.17 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCCeEEEEecCccceeeEEEcC-CCCEEEEEEe
Q 007010 52 RSRSVFLGVDVGTGSARAGLFDE-SGKLLGSASS 84 (621)
Q Consensus 52 m~~~~~lgIDiGTtsiKa~l~d~-~g~vv~~~~~ 84 (621)
|+.+ +|.|..|+||+|..|||. +.+++.....
T Consensus 1 ~~~~-iLvlN~GSSSlKf~lf~~~~~~~l~~G~v 33 (404)
T PRK12397 1 MSYK-IMAINAGSSSLKFQLLEMPQGDMLCQGLI 33 (404)
T ss_pred CCCc-EEEEECChHhheEEEEECCCCceEEEEEE
Confidence 5544 899999999999999995 4456655433
No 285
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=20.02 E-value=97 Score=25.14 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=21.4
Q ss_pred HHHHHHcCCCccccccccccCcccccCCCccCCCccHHHHHHcCCCCCCc
Q 007010 265 DEFWEEIGLGDLIDGHHAKIGRSVAFPGHPLGSGLTPAAAKELGLVPGTP 314 (621)
Q Consensus 265 ~~ll~~~gi~~~~~~~lp~i~~~v~~~g~~~G~~l~~~~a~~~Gl~~g~p 314 (621)
+++|+..++.+. +||+|. .++.+++.+|+.+|--
T Consensus 21 ~~lL~~y~i~~~---qLP~I~-------------~~DPv~r~~g~k~GdV 54 (74)
T PF01191_consen 21 KELLKKYNIKPE---QLPKIL-------------SSDPVARYLGAKPGDV 54 (74)
T ss_dssp HHHHHHTT--TT---CSSEEE-------------TTSHHHHHTT--TTSE
T ss_pred HHHHHHhCCChh---hCCccc-------------ccChhhhhcCCCCCCE
Confidence 468888899764 578764 5677788888877643
Done!