BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007012
(621 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578347|ref|XP_002530040.1| ATP binding protein, putative [Ricinus communis]
gi|223530456|gb|EEF32340.1| ATP binding protein, putative [Ricinus communis]
Length = 710
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/585 (71%), Positives = 475/585 (81%), Gaps = 18/585 (3%)
Query: 51 SNGTSLRH-VTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRC 108
+N +SL H VTRTL N EP + P M+SSASAVASAIR TS SPIEF+Q +E K
Sbjct: 130 NNTSSLLHRVTRTLPNG-EPELSSPPEMLSSASAVASAIRNTSNSPIEFVQKMEKSDK-S 187
Query: 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV-NAT 167
LVLPS DF+RLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV SYPG+ +A+
Sbjct: 188 KLVLPSLDFRRLCIEQLDLFRRIVDPDAILSVYVRPAGSYVMDRLELRRVTSYPGIISAS 247
Query: 168 DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMEL- 226
D+V+LVG FN+P GLRAAEAAL+SQQV VP+ RAVVFPMVKHPFVVGFLVAELP MEL
Sbjct: 248 DVVILVGTFNIPTGLRAAEAALASQQVNFVPDHRAVVFPMVKHPFVVGFLVAELPTMELV 307
Query: 227 ------QMCGTEEPDAAIGFQSSEEVYAFPPSFDT-ESHAIESFDHERMRVYKFSADQRL 279
Q G E + + FQS EE Y P S D +S I++ + E R+Y FSA+QRL
Sbjct: 308 PSYENVQTKGHE--NDLVPFQSPEEAYPLPSSPDNNKSWTIQTLNDESFRMYNFSAEQRL 365
Query: 280 NAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR 339
NAINI RSLAMAYVMDQK+MLLQQSSWQNN RMSNLVEQIRGPLSSIQTLSKMLS H+KR
Sbjct: 366 NAINISRSLAMAYVMDQKAMLLQQSSWQNNVRMSNLVEQIRGPLSSIQTLSKMLSTHLKR 425
Query: 340 SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRS 399
SEISYDIVEDIMVQGDRLR TLQELQDAV LTKANI+RYNEE L++++NS Y H ES+ S
Sbjct: 426 SEISYDIVEDIMVQGDRLRDTLQELQDAVHLTKANIMRYNEEALQRIHNSNYHHHESLGS 485
Query: 400 QLSNNFSRE-NSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
LS+N R+ + N L NS KP SL+ P D+EMPMPP+ALAPL+Q GIRPCNV +VL D
Sbjct: 486 HLSDNIPRDADDSNNLHNSGKPHSLNVPLDDLEMPMPPMALAPLQQYGIRPCNVYEVLSD 545
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L AV+PL QQR + LSELSQSL VA+EE ALRQALSNLIEGAL+RT+VGGKVEIV
Sbjct: 546 LVGAVQPLTFKQQRNIVLSELSQSLQVAIEEQALRQALSNLIEGALLRTRVGGKVEIVCT 605
Query: 519 AAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 576
APAG ALV+IDDDGPDMHYM MHSL PFG+EL SENM+EDNMTWNFVAGLTVARE+LE
Sbjct: 606 EAPAGGALVIIDDDGPDMHYMTQMHSLAPFGAELLSENMIEDNMTWNFVAGLTVAREILE 665
Query: 577 SYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNET 621
SYGCVVR+ISP TDAALG+GGT++ELWLPS A LSDLN +ET
Sbjct: 666 SYGCVVRIISPRITDAALGTGGTQIELWLPSFAALSDLNDIVHET 710
>gi|225424657|ref|XP_002282396.1| PREDICTED: uncharacterized protein LOC100249068 [Vitis vinifera]
gi|296081359|emb|CBI16792.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/633 (65%), Positives = 487/633 (76%), Gaps = 35/633 (5%)
Query: 7 TAVTPKTPLSKDHT------CCLLFCPNYHP--KFCA--SLNPKPL--TTSPKSLS---- 50
+AVTP+T + + C LL CPN H FC KPL T S SL+
Sbjct: 4 SAVTPQTLVGNSGSNTTSSNCNLLVCPNNHKVHSFCRPNGFTQKPLILTNSSNSLANNTS 63
Query: 51 ------SNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETD 104
SN +LRH + T S++ E MV+SASAVASAIRR STSP++F+Q IE +
Sbjct: 64 QLQNPNSNSKTLRHDSLTDSDETE-----GAMVASASAVASAIRRASTSPVDFIQRIEKN 118
Query: 105 QKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV 164
QK LVLPSPDFQRLC+EQL LF RIVDP+A+LSVYVRPAGSYVMDRLELRRV YPGV
Sbjct: 119 QKN-GLVLPSPDFQRLCLEQLDLFHRIVDPNALLSVYVRPAGSYVMDRLELRRVTFYPGV 177
Query: 165 NATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLM 224
N DIV+LVGNF++P G R AEAALS+QQ +V+PE RAVVFPMVKHPFVVGFLVAELP++
Sbjct: 178 NGADIVILVGNFSIPTGFRVAEAALSNQQAEVIPECRAVVFPMVKHPFVVGFLVAELPMV 237
Query: 225 ELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINI 284
E + E S +E YA PP D + I++ + E ++ YKF+ +QRLNAINI
Sbjct: 238 EDE----RERHPVTHCTSPDESYALPPQSDMKLGEIQALEEEGLKSYKFTEEQRLNAINI 293
Query: 285 CRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISY 344
RSLAMAYVMDQK+MLLQQSSWQNN RMS+LVEQIRGPLSSI+TLSKMLSLHMKRSEI+
Sbjct: 294 SRSLAMAYVMDQKAMLLQQSSWQNNVRMSDLVEQIRGPLSSIRTLSKMLSLHMKRSEIAN 353
Query: 345 DIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNN 404
DIVEDI+VQGDR+R LQ+LQDAV LTKANIVRYNEETLKKM S Y+H +S+ +QLS+N
Sbjct: 354 DIVEDIVVQGDRMRDALQQLQDAVHLTKANIVRYNEETLKKMYKSTYAHADSV-NQLSDN 412
Query: 405 FSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVR 464
F RE S +K + S +PLSL + A D++MP PPLALA + Q+GIRPCNV D+L DL AV+
Sbjct: 413 FWRETSSSKAEESGEPLSLTSAANDLDMPTPPLALARVSQHGIRPCNVYDILADLVGAVK 472
Query: 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
PLAH QQR+VEL SQ+L VAVEEPALRQALSNLIEGAL+RT+VGGKVEI+S PAG
Sbjct: 473 PLAHKQQREVELIGRSQTLQVAVEEPALRQALSNLIEGALLRTRVGGKVEILSTGTPAGG 532
Query: 525 ALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 582
A VVIDDDGPDMHYM MHSLTPFG++LFS+NM+EDNMTWNFVAGLTVA E+LESYGCVV
Sbjct: 533 AFVVIDDDGPDMHYMTQMHSLTPFGADLFSDNMLEDNMTWNFVAGLTVACEILESYGCVV 592
Query: 583 RVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 615
VISP TDAALG+GGTRV++ LPS SDLN
Sbjct: 593 HVISPRSTDAALGAGGTRVKILLPSLDAASDLN 625
>gi|449434987|ref|XP_004135277.1| PREDICTED: uncharacterized protein LOC101223159 [Cucumis sativus]
gi|449520695|ref|XP_004167369.1| PREDICTED: uncharacterized LOC101223159 [Cucumis sativus]
Length = 627
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/563 (65%), Positives = 445/563 (79%), Gaps = 22/563 (3%)
Query: 54 TSLRHVTRTL--SNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLV 111
T LRHV+ T+ ++DD GS MV SASAVASAI + STSP++F+ IE Q LV
Sbjct: 62 TLLRHVSHTVRDTHDD-----GS-MVPSASAVASAILKASTSPVDFVHRIENSQN-TGLV 114
Query: 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV 171
LPSPDFQRLC+EQL LFRRIVDPDA+LSVYVRPAGSYVMDRLELRRV S+PGVN TD+V+
Sbjct: 115 LPSPDFQRLCIEQLDLFRRIVDPDALLSVYVRPAGSYVMDRLELRRVASFPGVNVTDVVI 174
Query: 172 LVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMC-- 229
LVGNF++P GLRAAEAA SSQQV+V+ E +A+VFPMVKHPFVVGFLVAELP +E++ C
Sbjct: 175 LVGNFSVPTGLRAAEAAFSSQQVEVISEHKAIVFPMVKHPFVVGFLVAELPNLEMETCLD 234
Query: 230 ---GTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICR 286
+P + S E A +H + + ++ Y F+AD + NA +I R
Sbjct: 235 MQSADRDP---WSYSSPHEAGALVAGSGISTHGFHNATNGSLKTYMFNADSQENAFHISR 291
Query: 287 SLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDI 346
SLAMAYVMDQK+MLLQQSSWQNN RM+NLV+QIRG LSSIQ+LSKMLS+HMK++EI+Y+I
Sbjct: 292 SLAMAYVMDQKAMLLQQSSWQNNLRMTNLVDQIRGSLSSIQSLSKMLSVHMKKNEIAYEI 351
Query: 347 VEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFS 406
+EDI++QGD +R TLQ+LQDAV+LTKANIV YNEETLKKM S+ ES+++QL +NF
Sbjct: 352 LEDILLQGDYMRNTLQQLQDAVYLTKANIVHYNEETLKKMYKSSNPLSESVKNQL-DNFP 410
Query: 407 RENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466
+ S +++ +S + +D+EMPMPP LAP+++ GIR CNVSDVL DL EAV+PL
Sbjct: 411 TDASNPRMKGGL--VSSNNTVRDMEMPMPPTILAPIQRQGIRSCNVSDVLIDLVEAVKPL 468
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
A QQR VELSE + S+ +AVEE +LRQALSNLIEGAL+RT+VGGKVEI+S AAPAG AL
Sbjct: 469 ARKQQRIVELSEQACSMQIAVEESSLRQALSNLIEGALLRTRVGGKVEIISTAAPAGGAL 528
Query: 527 VVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV 584
+V+DDDGPDMHYM MHSLTPFG++L S+ VEDNMTWNFVAGLTVA E+LESYGCVVRV
Sbjct: 529 IVVDDDGPDMHYMTQMHSLTPFGADLLSKERVEDNMTWNFVAGLTVACEILESYGCVVRV 588
Query: 585 ISPWKTDAALGSGGTRVELWLPS 607
ISP +DAALGSGGTR+ELWLPS
Sbjct: 589 ISPRCSDAALGSGGTRLELWLPS 611
>gi|18408874|ref|NP_564908.1| chloroplast sensor kinase [Arabidopsis thaliana]
gi|332196584|gb|AEE34705.1| chloroplast sensor kinase [Arabidopsis thaliana]
Length = 611
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/608 (63%), Positives = 464/608 (76%), Gaps = 33/608 (5%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPL---MELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S + + V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRV-----KLPSVKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N +H E+ RS+ + ++ + Q S LSL + D
Sbjct: 369 TKANIVRHNEEALKKINK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 421
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP 490
EMPMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEP
Sbjct: 422 EMPMPPLALAPLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEP 481
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGS 548
ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDDDGPDM YM MHSLTPFG+
Sbjct: 482 ALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGA 541
Query: 549 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS- 607
EL SENMVEDNMTWNFVAGLTVARE+LESYGCV+RVISP +DAALG+GGTRVELWLP+
Sbjct: 542 ELLSENMVEDNMTWNFVAGLTVAREILESYGCVIRVISPRSSDAALGAGGTRVELWLPAF 601
Query: 608 PAPLSDLN 615
PA +S+ N
Sbjct: 602 PAAVSEAN 609
>gi|297838533|ref|XP_002887148.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp.
lyrata]
gi|297332989|gb|EFH63407.1| hypothetical protein ARALYDRAFT_894541 [Arabidopsis lyrata subsp.
lyrata]
Length = 610
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/567 (65%), Positives = 447/567 (78%), Gaps = 19/567 (3%)
Query: 56 LRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSP 115
LR+V RT+SN++ P G MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSP
Sbjct: 54 LRYVNRTVSNEESEPGGGETMVASASAIASAIRGASTTPVEFTQIIEKDHLKTKIILPSP 113
Query: 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGN 175
DFQRLC+EQL LFR+IVDP+AVLS+YVRPAGSYVMDRLELRRV YP VN D+V+LVGN
Sbjct: 114 DFQRLCLEQLDLFRQIVDPNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNTGDVVILVGN 173
Query: 176 FNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPL----MELQMCGT 231
F +PAGLRAAEA+LSSQQV++V + RA VFPMVKHPFVVGFLVAELP+ E +
Sbjct: 174 FGIPAGLRAAEASLSSQQVELVNKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEKEE 233
Query: 232 EEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMA 291
E+P F S EE YA P S +T+S + + V F+A+QR AINI R+LAMA
Sbjct: 234 EKPHGLKHFPSPEEAYALPASANTKSPKV-----KLPSVKVFTAEQRSYAINISRTLAMA 288
Query: 292 YVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIM 351
YVMDQK+MLLQQSSWQNN RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++
Sbjct: 289 YVMDQKTMLLQQSSWQNNVRMSKLVEQIRGPLSTMRTLSKMLSSHTKRNQISHDIVEDLI 348
Query: 352 VQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSG 411
VQGD+++ TL+ELQDAV LTKANIVR+NEE LKK+N +H E+ RS N+ +++
Sbjct: 349 VQGDQIKDTLEELQDAVHLTKANIVRHNEEALKKINK---THNETRRS----NYEQKDPI 401
Query: 412 NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQ 471
+ + LSL + + D E+PMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQ
Sbjct: 402 DGSKIPSIRLSLGSGSDDSEIPMPPLALAPLQTHNIRPCDISNVLLDMVETVRPLALTQQ 461
Query: 472 RQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531
R VEL E S SL VAVEE ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDD
Sbjct: 462 RVVELGENSASLQVAVEESALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDD 521
Query: 532 DGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWK 589
DGPDM YM MHSLTPFG+EL SENMVEDNMTWNFVAGLTVARE+LESYGCV+RVISP
Sbjct: 522 DGPDMRYMTQMHSLTPFGAELLSENMVEDNMTWNFVAGLTVAREILESYGCVIRVISPRS 581
Query: 590 TDAALGSGGTRVELWLPS-PAPLSDLN 615
+DAALG+GGTRVELWLP PA +S+ N
Sbjct: 582 SDAALGAGGTRVELWLPPFPAAVSEAN 608
>gi|147860581|emb|CAN81865.1| hypothetical protein VITISV_010592 [Vitis vinifera]
Length = 608
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/645 (61%), Positives = 459/645 (71%), Gaps = 78/645 (12%)
Query: 7 TAVTPKTPLSKDHT------CCLLFCPNYHP--KFCA--SLNPKPL--TTSPKSLS---- 50
+AVTP+T + + C LL CPN H FC KPL T S SL+
Sbjct: 4 SAVTPQTLVGNSGSNTTSSNCNLLVCPNNHKVHSFCRPNGFTQKPLILTNSSNSLANNTS 63
Query: 51 ------SNGTSLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETD 104
SN +LRH + T S++ E MV+SASAVASAIRR STSP++F+Q IE +
Sbjct: 64 QLQNPNSNSKTLRHDSLTDSDETE-----GAMVASASAVASAIRRASTSPVDFIQRIEKN 118
Query: 105 QKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV 164
QK LVLPSPDFQRLC+EQL LF RIVDP+A+LSVYVRPAGSYVMDRLELRRV YPGV
Sbjct: 119 QKN-GLVLPSPDFQRLCLEQLDLFHRIVDPNALLSVYVRPAGSYVMDRLELRRVTFYPGV 177
Query: 165 NATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLM 224
N DIV+LVGNF++P G R AEAALS+QQ +V+PE RAVVFPMVKHPFVVGFLVAELP++
Sbjct: 178 NGADIVILVGNFSIPTGFRVAEAALSNQQAEVIPECRAVVFPMVKHPFVVGFLVAELPMV 237
Query: 225 ELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINI 284
E + E S +E YA PP D I++ + E ++ YKF+ +QRLNAINI
Sbjct: 238 EDE----RERHPVTHCTSPDESYALPPQSDMXLGEIQALEEEGLKSYKFTEEQRLNAINI 293
Query: 285 CRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISY 344
RSLAMAYVMDQK+MLLQQSSWQNN RMS+LVEQIRGPLSSI+TLSKMLSLHMKRSE
Sbjct: 294 SRSLAMAYVMDQKAMLLQQSSWQNNVRMSDLVEQIRGPLSSIRTLSKMLSLHMKRSE--- 350
Query: 345 DIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNN 404
ANIVRYNEETLKKM S Y+H +S+ +QLS+N
Sbjct: 351 ----------------------------ANIVRYNEETLKKMYKSTYAHADSV-NQLSDN 381
Query: 405 FSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI------------RPCNV 452
F RE S +K + S +PLSL + A D++MP PPLALA + Q+GI RPCNV
Sbjct: 382 FWRETSSSKAEESGEPLSLTSAANDLDMPTPPLALARVSQHGISSLLLMSLFMSGRPCNV 441
Query: 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGK 512
D+L DL AV+PLAH QQR+VEL SQ+L VAVEEPALRQALSNLIEGAL+RT+VGGK
Sbjct: 442 YDILADLVGAVKPLAHKQQREVELIGRSQTLQVAVEEPALRQALSNLIEGALLRTRVGGK 501
Query: 513 VEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTV 570
VEI+S PAG A VVIDDDGPDMHYM MHSLTPFG++LFS+NM+EDNMTWNFVAGLTV
Sbjct: 502 VEILSTGTPAGGAFVVIDDDGPDMHYMTQMHSLTPFGADLFSDNMLEDNMTWNFVAGLTV 561
Query: 571 ARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 615
A E+LESYGCVV VISP TDAALG+GGTRV++ LPS SDLN
Sbjct: 562 ACEILESYGCVVHVISPRSTDAALGAGGTRVKILLPSLDAASDLN 606
>gi|224110864|ref|XP_002315662.1| predicted protein [Populus trichocarpa]
gi|222864702|gb|EEF01833.1| predicted protein [Populus trichocarpa]
Length = 473
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/478 (71%), Positives = 399/478 (83%), Gaps = 13/478 (2%)
Query: 150 MDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPM 207
MDRLELRRV SYPGVNA+ DIV+LV NFN+P GLRAAEAA SS+Q + V E RAVVFPM
Sbjct: 1 MDRLELRRVTSYPGVNASSSDIVILVANFNIPTGLRAAEAAFSSKQAECVAEHRAVVFPM 60
Query: 208 VKHPFVVGFLVAELPLMELQM-CGTEEPDAAIGFQSSEEVYAFP-PSFD-TESHAIESFD 264
VKHPFVVGFLVAELP+ME+ + C E D S EE YA P SF ++S +I++ +
Sbjct: 61 VKHPFVVGFLVAELPMMEMDISCANGESD----LISPEEAYASPSASFKKSKSWSIQTLN 116
Query: 265 HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLS 324
E +R++ F+A+QRLNAINI +LAMAYVMDQK++LLQQSSWQNN RM+ LVEQIRGPLS
Sbjct: 117 DEPLRMFNFTAEQRLNAINISHTLAMAYVMDQKALLLQQSSWQNNVRMTTLVEQIRGPLS 176
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384
SI+TLSKMLS+H KRSEI+YDIVEDI+VQGD +R LQELQDAV+LTKANIVRYNEETL
Sbjct: 177 SIRTLSKMLSIHTKRSEIAYDIVEDIIVQGDSVRDALQELQDAVYLTKANIVRYNEETLM 236
Query: 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ 444
K++NSAY+HPES+RSQL +F ++S +KLQ KP L+ +KD+EMPMPPLAL+PL+Q
Sbjct: 237 KIHNSAYAHPESMRSQLPEDFLNDSS-DKLQTPGKPRFLNPASKDMEMPMPPLALSPLQQ 295
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+GIRPCNVS+VL DL EA PLA+ QQR +EL ELSQSL VA+EEPALRQALSNLIEGAL
Sbjct: 296 HGIRPCNVSEVLSDLVEAAIPLANKQQRILELGELSQSLQVAIEEPALRQALSNLIEGAL 355
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTW 562
+RT VGGKVEIVS APAG ALVVIDDDGPDMHYM M SL PFG+ELFSENMVEDNMTW
Sbjct: 356 LRTHVGGKVEIVSTGAPAGGALVVIDDDGPDMHYMTQMRSLIPFGAELFSENMVEDNMTW 415
Query: 563 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNE 620
NFVAGLTVARE+LE+YGCVVRVISP +DAALG+GGTR+ELWLPS A SD N ++E
Sbjct: 416 NFVAGLTVAREILENYGCVVRVISPRVSDAALGTGGTRIELWLPSFAS-SDQNDLAHE 472
>gi|356511068|ref|XP_003524253.1| PREDICTED: uncharacterized protein LOC100792515 [Glycine max]
Length = 612
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/552 (64%), Positives = 426/552 (77%), Gaps = 11/552 (1%)
Query: 77 VSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
V SA+AVA+AIR+ STSP++F Q +E ++++ LVLPS DF RLC+ QLHLFRRIV P+A
Sbjct: 63 VPSAAAVAAAIRKASTSPVQFTQQLE-NERQSGLVLPSTDFHRLCLHQLHLFRRIV-PEA 120
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPG-VNATDIVVLVGNFNMPAGLRAAEAALSSQQVQ 195
+LSVYVRPAGSYVMDRLELRRV YPG A IV+LVG+FN+PAGLRAAEA LS+ QV
Sbjct: 121 LLSVYVRPAGSYVMDRLELRRVALYPGDAEAEGIVILVGHFNIPAGLRAAEATLSNSQVN 180
Query: 196 VVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPP--SF 253
VVPE +AVV PMVKHPFVVGFLVAELPL+E + C + D S EE Y+FPP
Sbjct: 181 VVPECKAVVLPMVKHPFVVGFLVAELPLVEQEQCQKSQSDGPENLMSVEEPYSFPPFLDL 240
Query: 254 DTESHAIESFD--HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR 311
D +S I++ +E + ++ F+++QR NA+NI +SLAMAYVMDQK+MLLQQS+WQNN R
Sbjct: 241 DKKSREIQNLQVKNEAVGMHNFTSEQRSNAVNISQSLAMAYVMDQKAMLLQQSTWQNNVR 300
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
M NLVEQIRGPLSSIQTLSK+LS KR++IS+DIVED++VQGDRLR LQ+LQDAV+LT
Sbjct: 301 MGNLVEQIRGPLSSIQTLSKILSTQTKRTQISHDIVEDLLVQGDRLRDVLQQLQDAVYLT 360
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
K NIVRYNEE +KKMN S + ES RSQL ++ + S NK++ S + LSL +DIE
Sbjct: 361 KTNIVRYNEEAIKKMNGSTHILAESSRSQLLDSSPGDVSANKMKKSSESLSLSAAVQDIE 420
Query: 432 MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQV-ELSELSQSLLVAVEEP 490
M P Q+GIR CNVS+VL DL ++VRPLA Q+R V S LL AVEEP
Sbjct: 421 M-PLPPLALAPLQHGIRSCNVSEVLADLVDSVRPLAQGQKRVVELSELSSSPLLAAVEEP 479
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGS 548
ALRQA SNLIEGAL+RT VGGKVEIVS AAPAG LV+IDDDGPDMHYM MHSLTP+G
Sbjct: 480 ALRQAFSNLIEGALLRTHVGGKVEIVSTAAPAGGTLVLIDDDGPDMHYMTQMHSLTPYGQ 539
Query: 549 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608
EL S+NM+EDNMTWNFVAGLTVARE+LESYGCVVR++SP DA LG+GGTRVELWLPS
Sbjct: 540 ELLSDNMIEDNMTWNFVAGLTVAREILESYGCVVRIVSPRIKDAPLGAGGTRVELWLPSS 599
Query: 609 APLSDLNGKSNE 620
SDL+ + E
Sbjct: 600 IVQSDLSSHAQE 611
>gi|11072033|gb|AAG28912.1|AC008113_28 F12A21.3 [Arabidopsis thaliana]
Length = 610
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/608 (60%), Positives = 447/608 (73%), Gaps = 34/608 (5%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPL---MELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S + + V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRV-----KLPSVKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQ++ S+Q ++ + S SY D++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQVQATHLSLQLAFVAGNVILPES-CSYRTDLDLIVQGDQIKDTLEELQDAVHL 367
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N +H E+ RS+ + ++ + Q S LSL + D
Sbjct: 368 TKANIVRHNEEALKKINK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 420
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP 490
EMPMPPLALAPL+ + IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEP
Sbjct: 421 EMPMPPLALAPLQMHSIRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEP 480
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGS 548
ALRQALSNLIEGAL+RT VGGKVEI+S APAG +LVVIDDDGPDM YM MHSLTPFG+
Sbjct: 481 ALRQALSNLIEGALLRTHVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGA 540
Query: 549 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS- 607
EL SENMVEDNMTWNFVAGLTVARE+LESYGCV+RVISP +DAALG+GGTRVELWLP+
Sbjct: 541 ELLSENMVEDNMTWNFVAGLTVAREILESYGCVIRVISPRSSDAALGAGGTRVELWLPAF 600
Query: 608 PAPLSDLN 615
PA +S+ N
Sbjct: 601 PAAVSEAN 608
>gi|109676316|gb|ABG37640.1| ATP-binding protein [Populus trichocarpa]
Length = 771
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/598 (61%), Positives = 431/598 (72%), Gaps = 77/598 (12%)
Query: 40 KPLTTSPKSLS---SNGT---SLRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTS 93
KPL +P + S SNG + HVT +LS+DDE GS +VSSASAVASAIRR S+S
Sbjct: 233 KPLLRAPSASSLTASNGNLENPIHHVTHSLSDDDEEAGGGSGLVSSASAVASAIRRGSSS 292
Query: 94 PIEFLQTIETDQK----RCNLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYV 149
+EF+Q IE Q + LVLPSPDFQRLCV+QL LF RIVDPDA+LSVYVRPAGSYV
Sbjct: 293 SVEFVQRIEKGQNNNDNKTKLVLPSPDFQRLCVQQLDLFHRIVDPDAILSVYVRPAGSYV 352
Query: 150 MDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPM 207
MDRLELRRV SYPGVNA+ DIV+LV NFN+P GLRAAEAA SS+Q + V E RAVVFPM
Sbjct: 353 MDRLELRRVTSYPGVNASSSDIVILVANFNIPTGLRAAEAAFSSKQAECVAEHRAVVFPM 412
Query: 208 VKHPFVVGFLVAELPLMELQM-CGTEEPDAAIGFQSSEEVYAFP-PSFD-TESHAIESFD 264
VKHPFVVGFLVAELP+ME+ + C E D S EE YA P SF ++S +I++ +
Sbjct: 413 VKHPFVVGFLVAELPMMEMDISCANGESD----LISPEEAYASPSASFKKSKSWSIQTLN 468
Query: 265 HERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLS 324
E +R++ F+A+QRLNAINI +LAMAYVMDQK++LLQQS
Sbjct: 469 DEPLRMFNFTAEQRLNAINISHTLAMAYVMDQKALLLQQS-------------------- 508
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384
S Q +M +L + +ANIVRYNEETL
Sbjct: 509 SWQNNVRMTTL----------------------------------VEQANIVRYNEETLM 534
Query: 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ 444
K++NSAY+HPES+RSQL +F +S +KLQ KP L+ +KD+EMPMPPLAL+PL+Q
Sbjct: 535 KIHNSAYAHPESMRSQLPEDF-LNDSSDKLQTPGKPRFLNPASKDMEMPMPPLALSPLQQ 593
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+GIRPCNVS+VL DL EA PLA+ QQR +EL ELSQSL VA+EEPALRQALSNLIEGAL
Sbjct: 594 HGIRPCNVSEVLSDLVEAAIPLANKQQRILELGELSQSLQVAIEEPALRQALSNLIEGAL 653
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTW 562
+RT VGGKVEIVS APAG ALVVIDDDGPDMHYM M SL PFG+ELFSENMVEDNMTW
Sbjct: 654 LRTHVGGKVEIVSTGAPAGGALVVIDDDGPDMHYMTQMRSLIPFGAELFSENMVEDNMTW 713
Query: 563 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNE 620
NFVAGLTVARE+LE+YGCVVRVISP +DAALG+GGTR+ELWLPS A SD N ++E
Sbjct: 714 NFVAGLTVAREILENYGCVVRVISPRVSDAALGTGGTRIELWLPSFAS-SDQNDLAHE 770
>gi|226494793|ref|NP_001148109.1| LOC100281717 [Zea mays]
gi|195615846|gb|ACG29753.1| ATP binding protein [Zea mays]
gi|223942835|gb|ACN25501.1| unknown [Zea mays]
gi|414886403|tpg|DAA62417.1| TPA: ATP binding protein [Zea mays]
Length = 619
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 320/613 (52%), Positives = 398/613 (64%), Gaps = 52/613 (8%)
Query: 25 FCPNYHPKFCAS---LNPKPLT-TSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSS- 79
+CP + K S LNP P S ++ + LRHV D+E G V
Sbjct: 17 YCP--YSKLSVSIPTLNPLPRGPLSRRACACAHRYLRHVAS--PADEEEAGYGEGSVEGD 72
Query: 80 ------ASAVASAIRRTST-SPIEFL----QTIETDQKRCNLVLPSPDFQRLCVEQLHLF 128
A+AVA+ IRR S+ SP+ F + +E + L PSPDF+RLC EQL +F
Sbjct: 73 DLGPASAAAVAATIRRASSASPVRFRCVLGEAVEEPRGEEGLADPSPDFRRLCAEQLEIF 132
Query: 129 RRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN---ATDIVVLVGNFNMPAGLRAA 185
R ++ DAVLSVYVRPAGSY+MD+LELRRV YPG+N D VLV NF++ +GLRAA
Sbjct: 133 RVLISRDAVLSVYVRPAGSYIMDQLELRRVALYPGINNLSEKDTPVLVCNFSISSGLRAA 192
Query: 186 EAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP------LMELQMCGTEEPDAAIG 239
EA L QQ++V+ E A+V PMVKHPFVVGFLV ELP M TE P
Sbjct: 193 EAFLVKQQMEVIREFGAIVLPMVKHPFVVGFLVVELPELHGGRAMNSYTADTELPPNTFM 252
Query: 240 FQSSEEVYAFPPSFDTESHA---IESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296
+SS D H I+++ + + + + +A+ I R+LAMAYVMDQ
Sbjct: 253 DKSS----------DVTPHTAWDIQTYGDQAKGYSQLVNEWKNSALMISRTLAMAYVMDQ 302
Query: 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDR 356
K+ LLQQ+SWQNN RMS LVEQI GPLSSI+ L+KMLS H KRSEI YDI+ED++ QGD
Sbjct: 303 KAYLLQQTSWQNNVRMSGLVEQIWGPLSSIRALAKMLSFHTKRSEIPYDIIEDMLTQGDH 362
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
++ LQ++QDAV+LTKANIVR NEETLK + S HP S + GN Q
Sbjct: 363 MKDALQQIQDAVYLTKANIVRSNEETLKTIQRS--PHPSRTLSDY-----KSVPGNDSQK 415
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL 476
L+L + D+ MPMPPL LAPL+ RPC++ DVL DL PLA+ QQR ++L
Sbjct: 416 LDPVLALSSDGYDMVMPMPPLWLAPLQHQYDRPCDLCDVLKDLVAGALPLAYKQQRTLDL 475
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+E+S L VAVEE ALR+ALSNLIEGAL+RTQ GG V+I + APAG ALVVIDDDGPDM
Sbjct: 476 TEISHPLHVAVEESALRKALSNLIEGALLRTQHGGVVQICAVEAPAGGALVVIDDDGPDM 535
Query: 537 HYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 594
YM M SL PFGS+L ++ M+EDNMTWNF+AGLTVARELLE YGCV+RVISP +TDA +
Sbjct: 536 QYMTQMRSLAPFGSDL-ADGMLEDNMTWNFIAGLTVARELLEEYGCVLRVISPRRTDAVI 594
Query: 595 GSGGTRVELWLPS 607
G+GG+RVE+WLPS
Sbjct: 595 GTGGSRVEIWLPS 607
>gi|218186700|gb|EEC69127.1| hypothetical protein OsI_38049 [Oryza sativa Indica Group]
Length = 598
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 307/606 (50%), Positives = 389/606 (64%), Gaps = 64/606 (10%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR +V DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSADFRRLCGEQLEMFRVVVSRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQK+ LLQQ
Sbjct: 243 DKSSDITPYTKGEAWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQKAYLLQQ 302
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
+SWQNN RMS LVEQIRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 303 ASWQNNIRMSGLVEQIRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 362
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 363 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 414
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL 483
D+ D+ +PMPPL LAPL+ RPC++S VL DL A +PLA QQR ++++ +S L
Sbjct: 415 DSDNGDMVIPMPPLWLAPLQPQDTRPCDLSVVLEDLVGAAQPLAFRQQRTLDVTGISHPL 474
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH 541
VAVEE ALRQALSNLIEGAL+RTQ+GG+V+I + APAG LVVIDDDGPDM YM MH
Sbjct: 475 QVAVEESALRQALSNLIEGALLRTQLGGRVQIYAGEAPAGGILVVIDDDGPDMQYMTQMH 534
Query: 542 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 601
L PFGS+L GLTVARE+LE+YGCV+RVISP + DA +G+GG+R+
Sbjct: 535 CLAPFGSDLAD--------------GLTVAREILENYGCVLRVISPRRPDAIIGTGGSRI 580
Query: 602 ELWLPS 607
E+WLP+
Sbjct: 581 EIWLPT 586
>gi|15146206|gb|AAK83586.1| At1g67840/F12A21_3 [Arabidopsis thaliana]
gi|21360445|gb|AAM47338.1| At1g67840/F12A21_3 [Arabidopsis thaliana]
Length = 457
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/413 (64%), Positives = 316/413 (76%), Gaps = 17/413 (4%)
Query: 150 MDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVK 209
MDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQV++V + RA VFPMVK
Sbjct: 1 MDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQVELVSKHRAAVFPMVK 60
Query: 210 HPFVVGFLVAELPLMELQMCGTE---EPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHE 266
HPFVVGFLVAELP+ + E +P F S EE YA P S +T+S ++
Sbjct: 61 HPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALPASANTKSPRVKLPS-- 118
Query: 267 RMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSI 326
V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN RMS LVEQIRGPLS++
Sbjct: 119 ---VKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNVRMSKLVEQIRGPLSTM 175
Query: 327 QTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386
+TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV LTKANI+R+NEE LKK+
Sbjct: 176 RTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHLTKANIMRHNEEALKKI 235
Query: 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNG 446
N +H E+ RS+ + ++ + Q S LSL + D EMPMPPLALAPL+ +
Sbjct: 236 NK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDSEMPMPPLALAPLQMHS 288
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
IRPC++S+VL D+ E VRPLA QQR VEL E S SL VAVEEPALRQALSNLIEGAL+R
Sbjct: 289 IRPCDISNVLLDMVETVRPLALTQQRVVELGENSASLQVAVEEPALRQALSNLIEGALLR 348
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVE 557
T VGGKVEI+S APAG +LVVIDDDGPDM YM MHSLTPFG+EL SENMVE
Sbjct: 349 THVGGKVEILSTRAPAGGSLVVIDDDGPDMRYMTQMHSLTPFGAELLSENMVE 401
>gi|125579071|gb|EAZ20217.1| hypothetical protein OsJ_35821 [Oryza sativa Japonica Group]
Length = 576
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 289/606 (47%), Positives = 370/606 (61%), Gaps = 86/606 (14%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR ++ DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSTDFRRLCGEQLEMFRVVISRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQ
Sbjct: 243 DKSSDITPYTKGETWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQ------- 295
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
IRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 296 ---------------IRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 340
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 341 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 392
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL 483
D+ D+ +PMPPL LAPL+ RPC++S VL DL A +PLA QQR ++++ +S L
Sbjct: 393 DSDNGDMVIPMPPLWLAPLQPQDARPCDLSVVLEDLVGAAQPLAFRQQRTLDVTGISHPL 452
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH 541
VAVEE ALRQALSNLIEGAL+RTQ+GG+V+I + APAG LVVIDDDGPDM YM MH
Sbjct: 453 QVAVEESALRQALSNLIEGALLRTQLGGRVQIYAGEAPAGGILVVIDDDGPDMQYMTQMH 512
Query: 542 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 601
L PFGS+L GLTVARE+LE+YGCV+RVISP + DA +G+GG+R+
Sbjct: 513 CLAPFGSDLAD--------------GLTVAREILENYGCVLRVISPRRPDAIIGTGGSRI 558
Query: 602 ELWLPS 607
E+WLP+
Sbjct: 559 EIWLPT 564
>gi|42572021|ref|NP_974101.1| chloroplast sensor kinase [Arabidopsis thaliana]
gi|332196583|gb|AEE34704.1| chloroplast sensor kinase [Arabidopsis thaliana]
Length = 445
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 254/438 (57%), Positives = 317/438 (72%), Gaps = 30/438 (6%)
Query: 27 PNYHPKFCASL-NPKPLTTSPKSLSSNGT------------SLRHVTRTLSNDDEPPAAG 73
PN H F S+ NP+P S K L+++ + LR+V T+SN++ P G
Sbjct: 16 PNLH--FSNSIPNPRPSNPSLKLLNASSSSSSSSSSSIFTRGLRYVNHTVSNEESEPGGG 73
Query: 74 SPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVEQLHLFRRIVD 133
MV+SASA+ASAIR ST+P+EF Q IE D + ++LPSPDFQRLC+EQL LFR+IVD
Sbjct: 74 ETMVASASAIASAIRGASTTPVEFTQMIEKDHLKTKIILPSPDFQRLCLEQLDLFRQIVD 133
Query: 134 PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQ 193
P+AVLS+YVRPAGSYVMDRLELRRV YP VNA D+V+LVGNF +PAGLRAAEA+LSSQQ
Sbjct: 134 PNAVLSIYVRPAGSYVMDRLELRRVTCYPSVNAGDVVILVGNFGIPAGLRAAEASLSSQQ 193
Query: 194 VQVVPEQRAVVFPMVKHPFVVGFLVAELPL---MELQMCGTEEPDAAIGFQSSEEVYAFP 250
V++V + RA VFPMVKHPFVVGFLVAELP+ E + E+P F S EE YA P
Sbjct: 194 VELVSKHRAAVFPMVKHPFVVGFLVAELPVEAEEEEEEEEEEKPHGVNQFLSPEEAYALP 253
Query: 251 PSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNA 310
S +T+S ++ V F+ +QR AINI R+LAMAYVMDQK+MLLQQSSWQNN
Sbjct: 254 ASANTKSPRVKLPS-----VKVFTEEQRSYAINISRTLAMAYVMDQKTMLLQQSSWQNNV 308
Query: 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFL 370
RMS LVEQIRGPLS+++TLSKMLS H KR++IS+DIVED++VQGD+++ TL+ELQDAV L
Sbjct: 309 RMSKLVEQIRGPLSTMRTLSKMLSTHTKRNQISHDIVEDLIVQGDQIKDTLEELQDAVHL 368
Query: 371 TKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDI 430
TKANIVR+NEE LKK+N +H E+ RS+ + ++ + Q S LSL + D
Sbjct: 369 TKANIVRHNEEALKKINK---THNETRRSK----YEHKDPIDGSQISSTRLSLGSGLDDS 421
Query: 431 EMPMPPLALAPLKQNGIR 448
EMPMPPLALAPL+ + IR
Sbjct: 422 EMPMPPLALAPLQMHSIR 439
>gi|217074886|gb|ACJ85803.1| unknown [Medicago truncatula]
Length = 458
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 244/407 (59%), Positives = 301/407 (73%), Gaps = 11/407 (2%)
Query: 64 SNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQKRCNLVLPSPDFQRLCVE 123
S+DD + + +SS A+ASAIR+ TSP+EF Q +E R LVLPSPDF RLC++
Sbjct: 44 SDDDHRNNSTTLTLSSTRALASAIRKVPTSPVEFTQRLEK-HPRNGLVLPSPDFHRLCLQ 102
Query: 124 QLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATD----IVVLVGNFNMP 179
QL LFRRIV P++ LSVYVRPAGSYVMD+LELRRV YPG +A I +LV +FN+P
Sbjct: 103 QLQLFRRIV-PESFLSVYVRPAGSYVMDQLELRRVAVYPGGDAESEEEGIAILVSHFNVP 161
Query: 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIG 239
AGLR+AE ALS QV+VVPE +AVV PMVKHPFVVGFLVAELPL+EL+ C + D
Sbjct: 162 AGLRSAETALSELQVKVVPECKAVVLPMVKHPFVVGFLVAELPLVELETCVKGQSDGLNN 221
Query: 240 FQSSEEVYAFPPSFDTESHAIE----SFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295
S +E Y+ PP D + + E E + + F+ADQR NA++I +SLAMAYVMD
Sbjct: 222 HVSGKEDYSLPPFLDLDKKSWEIQTLRMKDEPVGMCNFTADQRSNAVDISQSLAMAYVMD 281
Query: 296 QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGD 355
QK+MLLQQS+WQNN RM+NLVEQIRGPLSSIQTL K+LS K+SEISYDIVEDI+ GD
Sbjct: 282 QKAMLLQQSTWQNNIRMNNLVEQIRGPLSSIQTLGKILSTQTKKSEISYDIVEDILALGD 341
Query: 356 RLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQ 415
RL LQ+LQDAV+LTK NI+RYNEE++KKMN S + ES++SQL + R+ S NK+
Sbjct: 342 RLSDVLQQLQDAVYLTKGNILRYNEESIKKMNGSNHIFSESVKSQLLDGSPRDGSVNKMH 401
Query: 416 NSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462
S +PLSL A+DIEMP+PPLALAPL+ +GIR CNVS+VL DL +
Sbjct: 402 KSSEPLSLGAAAQDIEMPLPPLALAPLR-HGIRSCNVSEVLADLVDT 447
>gi|77554696|gb|ABA97492.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862513|gb|ABG21976.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862514|gb|ABG21977.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|108862515|gb|ABG21978.1| ATP-binding region, ATPase-like domain-containing protein,
putative, expressed [Oryza sativa Japonica Group]
gi|215694022|dbj|BAG89221.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 442
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 211/445 (47%), Positives = 270/445 (60%), Gaps = 48/445 (10%)
Query: 31 PKFCASLNPKPLT------TSPKSLSSNGTS--LRHVTRTLSND-DEPPAAGSPMVSSAS 81
P+F NP+P + P L + LRHV + +E G+P SA+
Sbjct: 16 PRFPTPHNPRPAVAIEAQHSFPHGLLARAACQPLRHVAAPAEGEGEEVEDLGTP---SAA 72
Query: 82 AVASAIRRTST-SPIEFLQTIETDQKRC----NLVLPSPDFQRLCVEQLHLFRRIVDPDA 136
AVA AIRR S+ SP+ F + + ++ PS DF+RLC EQL +FR ++ DA
Sbjct: 73 AVAEAIRRASSASPVRFRRVHREENEKLRGEGGFTEPSTDFRRLCGEQLEMFRVVISRDA 132
Query: 137 VLSVYVRPAGSYVMDRLELRRVVSYPGVNAT--DIVVLVGNFNMPAGLRAAEAALSSQQV 194
VLSVYVRPAGSY+MD+LELRRV YP N + D V+LVGNF + AGLRAAEA L Q+
Sbjct: 133 VLSVYVRPAGSYIMDQLELRRVALYPETNVSKGDTVILVGNFTISAGLRAAEAFLVKHQM 192
Query: 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFD 254
+++ E AVV PMVKHPFVVGFLVAELP EL C + I S SF
Sbjct: 193 EIITEFGAVVLPMVKHPFVVGFLVAELP--ELVGCTKNSETSDIQIPSH--------SFL 242
Query: 255 TESHAIESFDHERMRVYKFSADQ-----------RLNAINICRSLAMAYVMDQKSMLLQQ 303
+S I + ++ S DQ + +A+ I R+LAMAYVMDQK+ LLQQ
Sbjct: 243 DKSSDITPYTKGETWDFQTSGDQANSYAQLVTEWKNSALMISRTLAMAYVMDQKAYLLQQ 302
Query: 304 SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQE 363
+SWQNN RMS LVEQIRGPL++I+ L+KMLS+H KR+EISYDIVED+M+QGD L+ LQ+
Sbjct: 303 ASWQNNIRMSGLVEQIRGPLANIRALAKMLSVHTKRNEISYDIVEDVMIQGDHLKDALQQ 362
Query: 364 LQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSL 423
+QDAV+LTK NIVRYNEETLKK+ S S R+ +NS K+ + S
Sbjct: 363 IQDAVYLTKVNIVRYNEETLKKIQGSPSS-----RTLPHYQSDPKNSSQKVDSLS---SH 414
Query: 424 DTPAKDIEMPMPPLALAPLKQNGIR 448
D+ D+ +PMPPL LAPL+ R
Sbjct: 415 DSDNGDMVIPMPPLWLAPLQPQDAR 439
>gi|294461995|gb|ADE76553.1| unknown [Picea sitchensis]
Length = 316
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/317 (52%), Positives = 228/317 (71%), Gaps = 11/317 (3%)
Query: 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQ 353
MDQ+++LLQQ+SWQ RMSNL+EQI GPLS+I+TLSKML H+KRSEI +D++E+I+VQ
Sbjct: 1 MDQRALLLQQTSWQKGVRMSNLMEQIHGPLSNIRTLSKMLIPHLKRSEIPHDLLENILVQ 60
Query: 354 GDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNK 413
G+ ++G LQELQDA + TKAN++ + EE L ++ S+P S+L + FS + K
Sbjct: 61 GEHMKGLLQELQDAFYYTKANLMHFREEDLNRIQR-VRSNP---FSRLGHAFSDYDYNAK 116
Query: 414 LQNSCKPLSLDTPAK-DIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQR 472
SL + + D+E+PMPPLALA L+Q+ +RPCNVS +L DL A LAH QQ+
Sbjct: 117 ----STAFSLGSTVREDLELPMPPLALAALQQSNVRPCNVSKLLSDLVNAGDALAHSQQQ 172
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
++L E + L A+EE ALRQALSNL++ AL+R GG V++ + AP G LVVIDD+
Sbjct: 173 TLQLIECTPLLQAAIEETALRQALSNLLDSALLRVPGGGWVKVEATEAPGGGVLVVIDDN 232
Query: 533 GPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 590
GPDM M HSL PFGSEL E+ +DN+ WNFVAG+T+ARE+LE YG V+R++SP+
Sbjct: 233 GPDMSLMTQTHSLAPFGSELSLEDRAQDNVAWNFVAGITIAREILEHYGSVLRMLSPYLP 292
Query: 591 DAALGSGGTRVELWLPS 607
+A LG+GGT +E+WLP+
Sbjct: 293 NALLGAGGTHIEIWLPA 309
>gi|414886402|tpg|DAA62416.1| TPA: hypothetical protein ZEAMMB73_581571 [Zea mays]
Length = 450
Score = 325 bits (833), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 210/452 (46%), Positives = 266/452 (58%), Gaps = 49/452 (10%)
Query: 25 FCPNYHPKFCAS---LNPKPLT-TSPKSLSSNGTSLRHVTRTLSNDDEPPAAGSPMVSS- 79
+CP + K S LNP P S ++ + LRHV D+E G V
Sbjct: 17 YCP--YSKLSVSIPTLNPLPRGPLSRRACACAHRYLRHVAS--PADEEEAGYGEGSVEGD 72
Query: 80 ------ASAVASAIRRTST-SPIEFL----QTIETDQKRCNLVLPSPDFQRLCVEQLHLF 128
A+AVA+ IRR S+ SP+ F + +E + L PSPDF+RLC EQL +F
Sbjct: 73 DLGPASAAAVAATIRRASSASPVRFRCVLGEAVEEPRGEEGLADPSPDFRRLCAEQLEIF 132
Query: 129 RRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN---ATDIVVLVGNFNMPAGLRAA 185
R ++ DAVLSVYVRPAGSY+MD+LELRRV YPG+N D VLV NF++ +GLRAA
Sbjct: 133 RVLISRDAVLSVYVRPAGSYIMDQLELRRVALYPGINNLSEKDTPVLVCNFSISSGLRAA 192
Query: 186 EAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP------LMELQMCGTEEPDAAIG 239
EA L QQ++V+ E A+V PMVKHPFVVGFLV ELP M TE P
Sbjct: 193 EAFLVKQQMEVIREFGAIVLPMVKHPFVVGFLVVELPELHGGRAMNSYTADTELPPNTFM 252
Query: 240 FQSSEEVYAFPPSFDTESHA---IESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296
+SS D H I+++ + + + + +A+ I R+LAMAYVMDQ
Sbjct: 253 DKSS----------DVTPHTAWDIQTYGDQAKGYSQLVNEWKNSALMISRTLAMAYVMDQ 302
Query: 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDR 356
K+ LLQQ+SWQNN RMS LVEQI GPLSSI+ L+KMLS H KRSEI YDI+ED++ QGD
Sbjct: 303 KAYLLQQTSWQNNVRMSGLVEQIWGPLSSIRALAKMLSFHTKRSEIPYDIIEDMLTQGDH 362
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
++ LQ++QDAV+LTKANIVR NEETLK + S HP S + GN Q
Sbjct: 363 MKDALQQIQDAVYLTKANIVRSNEETLKTIQRSP--HPSRTLSDY-----KSVPGNDSQK 415
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448
L+L + D+ MPMPPL LAPL+ R
Sbjct: 416 LDPVLALSSDGYDMVMPMPPLWLAPLQHQYDR 447
>gi|168038002|ref|XP_001771491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677218|gb|EDQ63691.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 601
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 169/519 (32%), Positives = 267/519 (51%), Gaps = 62/519 (11%)
Query: 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLV 173
S +F LC EQL L + IV A +VY+RPA SY +LE + YP +V+
Sbjct: 120 SAEFLALCTEQLGLCQDIVGTPARFTVYIRPAESYSTGQLEFHCIAVYPSHQDELLVLKQ 179
Query: 174 GNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEE 233
+ +P L AEA L +Q+V V A++ PMVK F++GF+V E + + +
Sbjct: 180 SDTLVPISL--AEAKLINQEVVEVANGSAILLPMVKDLFLIGFIVVEG--VTTRSSTSSS 235
Query: 234 PDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAIN-ICRSLAMAY 292
P AA + + V+ PP ER V + Q+L+ ++ I +LA+A
Sbjct: 236 PKAA-KLKPIKPVW--PPK------------KERSPVAIPLSKQQLSELSKIALTLALAC 280
Query: 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMV 352
V+DQ+++LLQ+S+ + ++ L+EQ + PL +I+TLS+++ KR EIS D++EDI+V
Sbjct: 281 VVDQRALLLQKSNMKKVEQIDGLLEQAQAPLQAIRTLSQLMLPQFKRGEISRDLIEDILV 340
Query: 353 QGDRLRGTLQELQDAVFLTKA-------------NIVRYNEETLKKMNNSAYSHPESIRS 399
QG R++ LQ+LQ+ +TK+ N+ E L N +SH E+
Sbjct: 341 QGARMKDVLQQLQN---VTKSGPSIIQSSQDWEGNVEELPESKLASENRRLHSHGEN--- 394
Query: 400 QLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGD 458
++N R+ S P + D+E PMPPL LAP+ + I RPC+V+ VL
Sbjct: 395 --TDNIRRQGS--------LPAAHSDGRADVEAPMPPLTLAPVPEYDISRPCDVAKVLKQ 444
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L EA LA+ + + ++++ S L AV +L + S+++E AL GG V +
Sbjct: 445 LGEAANGLANKRGQNLQITSCS-PLHAAVNSASLHRVCSHILETALQHAPRGGYVRANAM 503
Query: 519 AAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 578
AP G L++I+D + GS+L + ED + FV +++++
Sbjct: 504 RAPGGGVLIIIEDGDLSTKGFNSARAWRGSDLEYALLGED---FRFV------QKIVKQE 554
Query: 579 GCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL-NG 616
G V+RV++P + D LG GGT VE+WLP+ D NG
Sbjct: 555 GGVLRVLAPVQKDLPLG-GGTYVEIWLPAVPNFEDFQNG 592
>gi|224110868|ref|XP_002315663.1| predicted protein [Populus trichocarpa]
gi|222864703|gb|EEF01834.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 67/88 (76%), Gaps = 4/88 (4%)
Query: 56 LRHVTRTLSNDDEPPAAGSPMVSSASAVASAIRRTSTSPIEFLQTIETDQ----KRCNLV 111
+ HVT +LS+DDE GS +VSSASAVASAIRR S+S +EF+Q IE Q + LV
Sbjct: 21 IHHVTHSLSDDDEEAGGGSGLVSSASAVASAIRRGSSSSVEFVQRIEKGQNNNDNKTKLV 80
Query: 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLS 139
LPSPDFQRLCV+QL LF RIVDPDA+LS
Sbjct: 81 LPSPDFQRLCVQQLDLFHRIVDPDAILS 108
>gi|255574672|ref|XP_002528245.1| hypothetical protein RCOM_0590050 [Ricinus communis]
gi|223532331|gb|EEF34130.1| hypothetical protein RCOM_0590050 [Ricinus communis]
Length = 117
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 51 SNGTSLRHVTRTLSNDDEPPAAGSP-MVSSASAVASAIRRTSTSPIEFLQTIETDQKRCN 109
+N +SL H + + EP P MVS A AVASAIR+TS SPIEF+Q +E K
Sbjct: 31 NNTSSLLHRVTCMLPNGEPELTSPPEMVSFALAVASAIRKTSNSPIEFVQKMEKSDKS-K 89
Query: 110 LVLPSPDFQRLCVEQLHLFRRIVDPDA 136
LVL S DF +LC+EQL LFRRIVDPDA
Sbjct: 90 LVLASLDFHKLCIEQLDLFRRIVDPDA 116
>gi|434394076|ref|YP_007129023.1| histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428265917|gb|AFZ31863.1| histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 445
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 64/340 (18%)
Query: 283 NICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRGPLSSIQTLSKMLSL 335
++ ++LA+A V+D++ L QQ S R + NL+ Q+R PL++++T K+L
Sbjct: 148 HVAQTLALARVLDKRREWYEQQLTQQQSLMQTQRDLLDNLLHQLRNPLTALRTFGKLLIK 207
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + E+I+ + DR++ L++ + LT + P+
Sbjct: 208 RFVPGDTNRKVAENIVRESDRIQELLKQFDRIIELTPQ------------------TEPD 249
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+S S PL L+ + +E PL L P I PC+V D+
Sbjct: 250 PEKSL----------------SVTPLVLE---RTVEPVTKPLVLLPNVGENIEPCSVVDI 290
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L L + +A + V+ S++ L LV ALR+ SNL++ AL T GG++
Sbjct: 291 LEPLLASANAIAQERNLNVQ-SDIPADLPLVYANRVALREVFSNLLDNALKYTPAGGQIY 349
Query: 515 IVSAAAPAGDAL-VVIDDDGP-----DMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
I P D + I D GP D+ +M E + + GL
Sbjct: 350 I--QVEPKEDFQGIAISDTGPGIPAQDLEHMF--------ERHYRGVQAASQIPGTGLGL 399
Query: 569 TVARELLESYGCVVRVISPWK--TDAALGSGGTRVELWLP 606
+A++L+E ++V SP K T +A+ + GT +WLP
Sbjct: 400 AIAKDLVEQMQGRIQVFSPAKHFTHSAVNNPGTTFVVWLP 439
>gi|297729087|ref|NP_001176907.1| Os12g0292900 [Oryza sativa Japonica Group]
gi|255670236|dbj|BAH95635.1| Os12g0292900, partial [Oryza sativa Japonica Group]
Length = 96
Score = 77.4 bits (189), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 169 IVVLVGNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP 222
+++LVGNF + AGLRAAEA L Q++++ E AVV PMVKHPFVVGFLVAELP
Sbjct: 39 VLILVGNFTISAGLRAAEAFLVKHQMEIITEFGAVVLPMVKHPFVVGFLVAELP 92
>gi|186684154|ref|YP_001867350.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
PCC 73102]
gi|186466606|gb|ACC82407.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
PCC 73102]
Length = 448
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 57/336 (16%)
Query: 283 NICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A ++DQ+ L +Q Q R + NL+ Q R PL++++T K+L
Sbjct: 154 QIAQTLAIACILDQRRAWFEQQLREQQILQEKQRDLLDNLLHQFRNPLTALRTFGKLLLK 213
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ I+ + DRL+ LQ+ + LT+ ++ + H
Sbjct: 214 RLRPGDSNRDVANSIVRESDRLQELLQQFDQVIDLTETDLAPLH----------LPEHEV 263
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + +Q KP PL L P + C+++D+
Sbjct: 264 FVEA-------------TIQKDAKP---------------PLLL-PGTGDKAVDCSLADI 294
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R+++L +E+ + S LV ALR+ L+N+I+ AL T GGK+
Sbjct: 295 LEPLLISAKAIA--QERKLKLITEIQENSPLVRANIKALREVLTNIIDNALKYTPTGGKI 352
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 573
I + A + I D+GP + L G + + + + GL +A++
Sbjct: 353 LIQAGQEKANFQGIAISDNGPGIPP--EDLEHLGERHYRGVQAQTEIPGTGL-GLAIAKQ 409
Query: 574 LLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 606
L+E + V SP ++ L S GT +WLP
Sbjct: 410 LIEQMQGKIEVFSP-AINSKLTSPNAPGTTFIIWLP 444
>gi|220905649|ref|YP_002480960.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7425]
gi|219862260|gb|ACL42599.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7425]
Length = 437
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 103/422 (24%), Positives = 174/422 (41%), Gaps = 107/422 (25%)
Query: 197 VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256
+P+ +V P++ + V+GFLV G E+ P +D E
Sbjct: 95 LPQVEQIVLPLIHNNLVLGFLV----------VGREDR----------------PWWDWE 128
Query: 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR----- 311
+E H +LA+A ++DQ+ L+QS +Q +
Sbjct: 129 QQQLEQVAH---------------------TLAIACLLDQRHQWLEQSHYQQRSMQQQQY 167
Query: 312 --MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF 369
++NL+ QIR PLS+I+TL K+L + + ++ I+ + +RL+G LQ+ A+
Sbjct: 168 SLLANLLHQIRNPLSTIRTLGKLLLKRFLPEDPNRNLASSIVQESERLQGLLQQFDQAID 227
Query: 370 LTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKD 429
L +A + E+ +++S L TP +
Sbjct: 228 LGEAAL--------------------------------EDLALPIESS----RLTTPTQQ 251
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQ----RQVELSELSQSLLV 485
I +P P + ++PC+++++L L + +A Q Q+E L V
Sbjct: 252 ILLPAAPTT----GELQLQPCSLAELLTPLLLSATAIAQANQLDLQTQIETGPLPP---V 304
Query: 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDGPDMHYMMHSLT 544
V+ AL++ALSNLI+ AL T GGKV I + PA + I D GP + L
Sbjct: 305 TVDPQALKEALSNLIDNALKYTPAGGKVVIKLSRDPAQQQQCLTISDSGPGIP--AQDLP 362
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
+ E + + GL +AR L+E + VISP + + + GT ++
Sbjct: 363 HIFERHYRGVQAEGKLPGTGL-GLAIARHLIEQMQGRIEVISPARPHES--AAGTMFMVF 419
Query: 605 LP 606
LP
Sbjct: 420 LP 421
>gi|440681255|ref|YP_007156050.1| GAF sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
gi|428678374|gb|AFZ57140.1| GAF sensor signal transduction histidine kinase [Anabaena
cylindrica PCC 7122]
Length = 450
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 149/337 (44%), Gaps = 62/337 (18%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +++A+A ++DQ+ L+Q Q + NL+ Q R PL++I+T K+L
Sbjct: 158 IAQTIAIACILDQRRAWLEQQLHQQQIFQEAQRDLLDNLLHQFRNPLTAIRTFGKLLFKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ + + D+ I+ + DRL+ LQ+ + L++A++
Sbjct: 218 LRPGDTNRDVATSIVRESDRLQELLQQFDQVIDLSEADL--------------------- 256
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSL---DTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453
KP+SL ++ + PL L P + C+++
Sbjct: 257 ----------------------KPISLRESQVVEASVQKDVKPLLLLPGTGEKVIDCSLT 294
Query: 454 DVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGG 511
D+L L + + +A Q+R ++L +++ ++L LV AL++ LSN+I+ AL T GG
Sbjct: 295 DLLIPLLISTQAIA--QERNLDLIADIPENLPLVRANIKALQEVLSNIIDNALKYTPAGG 352
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
K+ I + + I D+GP + L G + + + + G+ +A
Sbjct: 353 KIWIQAGQKRTNFQGIAISDNGPGIPP--EDLEHLGERHYRGVQAQTEIPGTGL-GIAIA 409
Query: 572 RELLESYGCVVRVISPW--KTDAALGSGGTRVELWLP 606
++L+E + V SP +L + GT+ +WLP
Sbjct: 410 KQLIEQMQGEIEVFSPAFNLNMNSLANPGTKFIIWLP 446
>gi|17231474|ref|NP_488022.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
gi|17133117|dbj|BAB75681.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
Length = 454
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 148/344 (43%), Gaps = 73/344 (21%)
Query: 283 NICRSLAMAYVMDQK-------SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
+ ++LA+A ++DQ+ Q Q + NL+ Q R PL++++T K+L
Sbjct: 158 KVGQTLAIACILDQRRAWLQHQLHQQQILQEQQQDLLDNLLHQFRNPLTALRTFGKLLLK 217
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR--------YNEETLKKMN 387
++ + + D+ E+I+ + DRL+ LQ+ + + T+A++ R + E T++K
Sbjct: 218 RLRPGDPNRDVGENIVRESDRLKELLQKFEQVIDWTEADLSRLVLPEKEGFVEATVQKEA 277
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
A P +G +L +
Sbjct: 278 KPALLLP--------------GTGEQLTD------------------------------- 292
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALM 505
C V D+L L + + +A Q R ++L +++SQ L LV V AL++ LSN+I+ AL
Sbjct: 293 --CAVVDLLTPLLMSAKAIA--QDRHIKLKADISQDLPLVRVNIKALQEVLSNIIDNALK 348
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
T GGK+ I + + I D+GP + L G + + + +
Sbjct: 349 YTPQGGKIYIQAGQEKLNFQGIAISDNGPGIP--QEDLVHLGERHYRGVQAQTEIPGTGL 406
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 606
GL +A++L+E + + SP ++ L S GT +WLP
Sbjct: 407 -GLAIAKQLIEQMQGEIEIFSP-AINSKLTSPNTPGTTFIIWLP 448
>gi|75907940|ref|YP_322236.1| histidine kinase [Anabaena variabilis ATCC 29413]
gi|75701665|gb|ABA21341.1| histidine kinase [Anabaena variabilis ATCC 29413]
Length = 454
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 148/344 (43%), Gaps = 73/344 (21%)
Query: 283 NICRSLAMAYVMDQK-------SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
+ ++LA+A ++DQ+ Q Q + NL+ Q R PL++++T K+L
Sbjct: 158 KVGQTLAIACILDQRRAWLQHQLHQQQILQEQQQDLLDNLLHQFRNPLTALRTFGKLLLK 217
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR--------YNEETLKKMN 387
++ + + D+ E+I+ + DRL+ LQ+ + + T+A++ R + E T++K
Sbjct: 218 RLRPGDPNRDVGENIVRESDRLKELLQKFEQVIDWTEADLSRLVLPEKEGFVEATVQKEA 277
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
A P +G +L +
Sbjct: 278 KPALLLP--------------GTGEQLTD------------------------------- 292
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALM 505
C V D+L L + + +A Q R ++L +++SQ L LV V AL++ L+N+I+ AL
Sbjct: 293 --CAVIDLLTPLLMSAKAIA--QDRHIKLKADISQDLPLVRVNIKALQEVLTNIIDNALK 348
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
T GGK+ I + + I D+GP + L G + + + +
Sbjct: 349 YTPQGGKIYIQAGQEKLNFQGIAISDNGPGIP--QEDLAHLGERHYRGVQAQTEIPGTGL 406
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 606
GL +A++L+E + + SP ++ L S GT +WLP
Sbjct: 407 -GLAIAKQLIEQMQGEIEIFSP-AINSKLTSPNTPGTTFIIWLP 448
>gi|427734983|ref|YP_007054527.1| histidine kinase [Rivularia sp. PCC 7116]
gi|427370024|gb|AFY53980.1| histidine kinase [Rivularia sp. PCC 7116]
Length = 437
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 146/328 (44%), Gaps = 55/328 (16%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQK-----SMLLQQSSWQNNAR--MSNLVEQIRG 321
R +K S +R N+ +SLA+A +MD++ S L Q Q M NL+ Q R
Sbjct: 131 RAWKES--ERTQIENVAQSLAIACIMDRRRAWLASQLHQHQIMQEKQLDLMDNLLHQFRN 188
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++++T K+L+ + + + ++ I+ + DRL+ LQ+ +A+ LT
Sbjct: 189 PLTALRTFGKLLTKRLLPKDANSEVALSIVRESDRLKELLQKFDEAIDLT---------- 238
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
PE + L P + +E P L L
Sbjct: 239 ------------PEDL----------------LPAKLLPKNQVEVEATVEENKPLLLLNG 270
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
+Q I ++++VL L + + +A Q+R ++L +E+ ++ LV ALR+ LSN+
Sbjct: 271 AEQE-IFEFDLNEVLQPLLISAKAIA--QERSLKLITEIDNTVFLVRGNSQALREVLSNI 327
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDN 559
++ AL T GGK+ I S A + + I D+GP + L G + E
Sbjct: 328 VDNALKYTPAGGKILIESIKDKANFSGIAISDNGPGIPK--KDLDHLGERGYRGVQAETE 385
Query: 560 MTWNFVAGLTVARELLESYGCVVRVISP 587
+ + + GL +A++L+E + V SP
Sbjct: 386 IPGSGL-GLAIAKQLIEQMQGEMEVFSP 412
>gi|414077476|ref|YP_006996794.1| two-component sensor histidine kinase [Anabaena sp. 90]
gi|413970892|gb|AFW94981.1| two-component sensor histidine kinase [Anabaena sp. 90]
Length = 451
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 136/313 (43%), Gaps = 53/313 (16%)
Query: 284 ICRSLAMAYVMDQK-------SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++DQ+ Q + + NL+ Q+R PL++I+T K+L
Sbjct: 159 IAKTLAIACIIDQRRAWLQHQLQQEQILQERQRDLLDNLLHQLRNPLTAIRTFGKLLFKR 218
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
M+ + + ++ I+ + DRL+ LQ+ + L A++ + PES
Sbjct: 219 MRPVDPNREVATSIVRESDRLQELLQQFDQVIDLNTADL-------------APLPLPES 265
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ ++ N ++ P+ P L P + C ++D+L
Sbjct: 266 -KVVINEN-------------------------VQKPVKPALLLPGTGEQLTDCCLADLL 299
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + ++ Q+R ++L +E+S L LV V E AL + LSN+I+ AL T GGK+
Sbjct: 300 APLLISAQAIS--QERNLQLITEISHYLPLVKVNEKALTEVLSNIIDNALKYTPPGGKIL 357
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 574
+ + I D GP + L G + + + + G+++A++L
Sbjct: 358 VQCGQQKGNLQGIAISDTGPGIPP--EDLEHLGERHYRGVQAKTEIPGTGL-GISIAKQL 414
Query: 575 LESYGCVVRVISP 587
+ + V SP
Sbjct: 415 IAEMQGSIEVFSP 427
>gi|332705417|ref|ZP_08425495.1| signal transduction histidine kinase [Moorea producens 3L]
gi|332355777|gb|EGJ35239.1| signal transduction histidine kinase [Moorea producens 3L]
Length = 473
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 135/323 (41%), Gaps = 47/323 (14%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
+I R+LA+AYV++Q+ +Q Q+ + +L+ Q R PL +++T K+L
Sbjct: 149 SIARTLAIAYVIEQRQGWFEQQLTQHRRLQAKQRDMLDDLLHQFRNPLMALRTFGKLLLK 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + +Y + I+ + DRL+ LQ+ + + + TL A S PE
Sbjct: 209 RLVPGDKNYPVASSIIRESDRLQELLQQFDACLDMNQTGTASL---TLPVATAEACSSPE 265
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
S L + +S +P S TP E P+ PL+ ++ DV
Sbjct: 266 S--DDLGEIYPTSHS--------EPHS--TPG---EFPLLTDKTLPLQLFAVK-----DV 305
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L L + + ++ S LV ALR+ LSNLI+ AL T GGK++I
Sbjct: 306 LEPLLISADAITQEANLELHCSIAPDLPLVKGNPKALREVLSNLIDNALKYTPAGGKIDI 365
Query: 516 ---VSAAAPAGDAL-VVIDDDGP-----DMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
V GDA+ + I D GP D+ ++ E + +
Sbjct: 366 QVGVGQWLDHGDAIAIAISDTGPGIAPEDLDHLF--------ERHYRGVQANGPIPGTGL 417
Query: 567 GLTVARELLESYGCVVRVISPWK 589
GL +A+EL+ + V SP K
Sbjct: 418 GLAIAKELMAYMQGDIEVFSPAK 440
>gi|427729398|ref|YP_007075635.1| histidine kinase [Nostoc sp. PCC 7524]
gi|427365317|gb|AFY48038.1| histidine kinase [Nostoc sp. PCC 7524]
Length = 443
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 149/338 (44%), Gaps = 61/338 (18%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
NI ++LA+A ++DQ+ LQ Q + NL+ Q R PL++++T K+L
Sbjct: 150 NIGQTLAIACILDQRRAWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTALRTFGKLLLK 209
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ E+I+ + DRL+ LQ+ + + + V + E L N +
Sbjct: 210 RLRPGDPNRDVGENIVRESDRLKELLQKFDEVI-----DWVDADSELLSLPKNEIFVE-- 262
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSL--DTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453
+Q KP L T ++I+ C+++
Sbjct: 263 ----------------ATVQREAKPALLLPGTGEQEID------------------CSLA 288
Query: 454 DVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGG 511
D+L L + + +A Q++ +EL +++ ++L LV AL++ LSN+++ A+ T GG
Sbjct: 289 DLLAPLLVSAQAIA--QEKNLELIADIPRNLPLVKANIKALQEVLSNIMDNAIKYTPPGG 346
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
+ I A + I D GP + L G + + + + G+ +A
Sbjct: 347 NIYIQLGREKANLQGIAISDTGPGIPP--EDLAHLGERHYRGVQAQTEIPGTGL-GIAIA 403
Query: 572 RELLESYGCVVRVISP---WKTDAALGSGGTRVELWLP 606
++L+E + V SP W A+ + GT V +WLP
Sbjct: 404 KQLIEQMQGEIEVFSPAINWAI-ASPDAPGTTVIIWLP 440
>gi|282898289|ref|ZP_06306280.1| Histidine Kinase [Raphidiopsis brookii D9]
gi|281196820|gb|EFA71725.1| Histidine Kinase [Raphidiopsis brookii D9]
Length = 469
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 140/340 (41%), Gaps = 56/340 (16%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ + LQ Q A + +L+ Q R PL++I+T K+L
Sbjct: 168 IATTLAIACILDQRQVWLQHQLQQEKALQKEQGDLLDSLLHQFRNPLTAIRTFGKLLLKR 227
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ ++ +I+ Q DRL+ LQ+ D V +K
Sbjct: 228 LRSNDTDREVAINIINQSDRLQELLQKF-DQVLDSK------------------------ 262
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLD-TPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SR+ + + S L+++ +P K + +P P C + D+
Sbjct: 263 ---------SRDTTAIPILGSA--LTVEASPDKTAPLLLPGTGEEPTS------CYLKDI 305
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L + + + LA + Q+ + + V ALR+ SN+I+ AL T GGK+ I
Sbjct: 306 LVPILASAQVLAQEKTIQLLIDIPNHLPPVKANTKALREVFSNIIDNALKYTPAGGKISI 365
Query: 516 VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL 575
S + I D GP + L G + ++ + G+ +A++L+
Sbjct: 366 QSLQKNTEIQGIAISDTGPGIP--KEDLERLGERHYRGVQANSSIPGTGL-GMAIAKQLI 422
Query: 576 ESYGCVVRVISPWKT--DAALGSGGTRVELWLPS-PAPLS 612
+ V SP A+ GT +WLP P PL+
Sbjct: 423 AQMQGEIEVFSPAVEFDRASFSLPGTSFIVWLPQLPYPLN 462
>gi|428226317|ref|YP_007110414.1| histidine kinase [Geitlerinema sp. PCC 7407]
gi|427986218|gb|AFY67362.1| histidine kinase [Geitlerinema sp. PCC 7407]
Length = 474
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 151/369 (40%), Gaps = 84/369 (22%)
Query: 284 ICRSLAMAYVMDQKSMLLQQ-------SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
+ ++LA V+D++S Q Q + + LV Q R PL++++T K+L
Sbjct: 147 VAKTLAAGCVLDRRSHWFQSHYHQQQDVQRQQHETLDTLVHQFRNPLTALRTFGKLLLRR 206
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + D+ I+ + DRL+ L ++ +TL+ +A P +
Sbjct: 207 LGMGDPNRDVASSIVRESDRLQELLVQIG---------------QTLQPTPGTAL--PRT 249
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEM---PMPPL--ALAPLKQNGIRPCN 451
I S P +LD A+ E P P L + L +RPC
Sbjct: 250 IAP-----------------SPDPEALDVVAQRTEQQEAPQPQLLPSTGWLSAADVRPCE 292
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQV 509
+ +VL L + + +A Q+RQ+ L + ++ V ALR+ LSNL++ AL T
Sbjct: 293 ILEVLEPLLMSTQAIA--QERQITLHIVLPDVIQPVLANPQALREVLSNLLDNALKYTPP 350
Query: 510 GGKVEIVSAAAPAGDA----LVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
GG+V++ A + + + I D GP + LF + +
Sbjct: 351 GGRVQLEVGATRSTETGLQQAIAITDTGPGIPLADQ------GRLFERHYRGVQAQGSIP 404
Query: 566 A---GLTVARELLESYGCVVRVISP-----WKTDA---------------ALGSGGTRVE 602
GL + +EL+E V + SP W T+A A+ S GT ++
Sbjct: 405 GSGLGLAIVKELIEQMQGSVELHSPAIASLWLTEADASELPDANGAEGDPAIASPGTTLQ 464
Query: 603 LWLP-SPAP 610
+WLP +P P
Sbjct: 465 IWLPIAPLP 473
>gi|428298468|ref|YP_007136774.1| histidine kinase [Calothrix sp. PCC 6303]
gi|428235012|gb|AFZ00802.1| histidine kinase [Calothrix sp. PCC 6303]
Length = 456
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 138/313 (44%), Gaps = 54/313 (17%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ LQQ Q + NL+ Q R PL++++T K+L
Sbjct: 164 IAQTLAIACILDRQRTWLQQQLHQQQIFQEKQLDLLDNLLHQFRNPLTALRTFGKLLLKR 223
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ E + ++ I+ + DRL+ LQ+ +A+ LT +++
Sbjct: 224 LRAGEANREVATSIVRESDRLQELLQKFDEAIDLTGEDLIPL------------------ 265
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+RSQ + ++ S +PL P L P C++ +VL
Sbjct: 266 LRSQ---------TEVVVEASVQPLK-------------PKLLLPGSDEIETDCDLMEVL 303
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L ++ +A Q+R +EL +E L LV + +LR+ +SN+++ +L T GGKV
Sbjct: 304 QPLLDSAYAIA--QERNLELITEFPLKLPLVRINHKSLREVISNILDNSLKYTPNGGKVL 361
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 574
+ + G + I D+GP + + G + + + GL +A++L
Sbjct: 362 VQTGLEKPGFQGIAISDNGPGIP--QQDIKHLGERHYRGVQAATQIPGTGL-GLAIAKQL 418
Query: 575 LESYGCVVRVISP 587
LE + V SP
Sbjct: 419 LEQMQGNLEVFSP 431
>gi|282901470|ref|ZP_06309395.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
gi|281193749|gb|EFA68721.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
Length = 466
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 53/332 (15%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ + LQ Q A + NL+ Q R PL++I+T K+L
Sbjct: 168 IATTLAIACILDQRQVWLQHQLQQEKALQKEQGDLLDNLLHQFRNPLTAIRTFGKLLLKR 227
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ + ++ +I+ Q DRL+ LQ ++ L N + P
Sbjct: 228 LRSNDTNREVAINIINQSDRLQELLQNF---------------DQVLDSKNRDTTAIPT- 271
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
L + E S P K + +P P C++ D+L
Sbjct: 272 ----LGLALTVEAS---------------PQKTAPLLLPGTGEEPTS------CHLKDIL 306
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
L + + LA + Q+ + + V AL + SN+I+ A+ T VGGK+ I
Sbjct: 307 LPLLASAQVLAQEKTIQLLIDIPNHLPPVKANIKALTEVFSNIIDNAIKYTPVGGKISIQ 366
Query: 517 SAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 576
S + I D GP + L G + ++ + G+ +A++L+
Sbjct: 367 SLQKNTDFQGIAISDTGPGIP--KEDLDRLGERNYRGVQANTDIPGTGL-GMAIAKQLIA 423
Query: 577 SYGCVVRVISPW-KTDAALGS-GGTRVELWLP 606
+ V SP + D+A S GT +WLP
Sbjct: 424 QMQGEIEVFSPAVEFDSASSSLPGTSFIVWLP 455
>gi|300863788|ref|ZP_07108715.1| histidine kinase [Oscillatoria sp. PCC 6506]
gi|300338216|emb|CBN53861.1| histidine kinase [Oscillatoria sp. PCC 6506]
Length = 478
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 47/242 (19%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I SLA+A V+DQ+S +QQ + Q M NL+ Q + PL++++T K+L
Sbjct: 157 IAHSLAIACVLDQRSQWMQQQAGQQQQLQLQQYDTMHNLLHQFKSPLTALRTFGKLLMKR 216
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + ++ I+ + DRL LQ++ V + + N++
Sbjct: 217 LLVEDKNREVAVSIVRESDRLSELLQQIDRTVDIGEKNLI-------------------- 256
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEM-PMPPLALAPLKQNGIRPCNVSDV 455
+ SQL E K+QNS + +E+ P + L P N PC+V++V
Sbjct: 257 LPSQLEPTSKSE----KIQNS----------RLVEISEFPAVELLP-AANFSEPCSVAEV 301
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L E+ R +A +R ++L +E+ +L LV ALR+ LSNL++ AL TQ G ++
Sbjct: 302 LNPLLESARAIA--DERHLKLQAEIPNNLPLVQANAKALREVLSNLLDNALKYTQAGRQI 359
Query: 514 EI 515
I
Sbjct: 360 YI 361
>gi|255087546|ref|XP_002505696.1| predicted protein [Micromonas sp. RCC299]
gi|226520966|gb|ACO66954.1| predicted protein [Micromonas sp. RCC299]
Length = 695
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 121/316 (38%), Gaps = 66/316 (20%)
Query: 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYP-------------- 162
FQ C Q+ L R + A +Y+R A S D L+L V S+P
Sbjct: 89 FQEFCDAQVELVGRALGRGARCMLYLRSA-SADGDALQLAEVASFPRSSRSSSGNDGAGP 147
Query: 163 ----------------GVNATDIVVLVGN------------------------FNMPAGL 182
G AT V L GN + +
Sbjct: 148 AGAWEVGGALRESDDFGAAATSFVELAGNEASTSGRGSSGSPRGSGTGGPGQAITLSGSI 207
Query: 183 -------RAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQ-MCGTEEP 234
AAEA L Q+V +P A+V P+ + +VG LV E+P + E
Sbjct: 208 DDSDGQSTAAEALLVKQRVFALPSANALVVPLSRDDTLVGLLVGEMPEGRVSSRVRKERV 267
Query: 235 DAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINIC-RSLAMAYV 293
AA G EV + S T + + +F D+R A+ +S+ A+
Sbjct: 268 KAASGGDVEVEVLS-AASAHTGEGEEKEKEAAADTAAQF-GDRRQAALTAAAKSIVAAWT 325
Query: 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQ 353
M +++ ++ Q + R++ + PL+ ++TL MLS H+K S D+ + I+ Q
Sbjct: 326 MHRRANYATAAAVQQDRRVAGFAYAAKEPLTVLRTLGGMLSSHLKPDTPSRDMADAIVAQ 385
Query: 354 GDRLRGTLQELQDAVF 369
GD L + L+ A++
Sbjct: 386 GDVLVSLSEALESALY 401
>gi|434405618|ref|YP_007148503.1| histidine kinase [Cylindrospermum stagnale PCC 7417]
gi|428259873|gb|AFZ25823.1| histidine kinase [Cylindrospermum stagnale PCC 7417]
Length = 459
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 153/366 (41%), Gaps = 73/366 (19%)
Query: 264 DHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLV 316
DHE+ + + I +++A+A ++DQ+ LQQ + + NL+
Sbjct: 149 DHEQGEIQR-----------IAQTMAIACILDQRRAWLQQQLHQQQIFQEKQRDLLDNLL 197
Query: 317 EQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIV 376
Q R PL++++T K+L ++ ++ + D+ I+ + DRL+ L + + + LT+A++
Sbjct: 198 HQFRNPLTAVRTFGKLLLKRLRPADPNRDVGTSIVRESDRLKELLIQFDEVIDLTEADL- 256
Query: 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436
L+K+ PES + + +F Q KP L
Sbjct: 257 -----ALRKL-------PES-KVFVEASF---------QKDAKPALL------------- 281
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L G + + V A Q+R ++L + L V V ALR+
Sbjct: 282 -----LPGTGEKTADCLLADLLDPLLVSAKAIAQERNLQLMANIPADLPPVQVNIKALRE 336
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSEN 554
LSN+I+ AL T GGK+ I A + I D GP + L G +
Sbjct: 337 VLSNIIDNALKYTNSGGKILIQVGQKRANFQGIAISDTGPGIPP--EDLEHLGERHYRGV 394
Query: 555 MVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLP----- 606
+ + + G+ +A++LLE + V SP D+A+ S GT V +WLP
Sbjct: 395 QAQTAIPGTGL-GMAIAKQLLEQMQGEIEVFSP-AIDSAITSPHTPGTTVIIWLPEVGAG 452
Query: 607 SPAPLS 612
SP P S
Sbjct: 453 SPRPSS 458
>gi|354568914|ref|ZP_08988075.1| histidine kinase [Fischerella sp. JSC-11]
gi|353539426|gb|EHC08913.1| histidine kinase [Fischerella sp. JSC-11]
Length = 438
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 138/343 (40%), Gaps = 50/343 (14%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQ-------QSSWQNNARMSNLVEQIRGPLSS 325
++ +R +I R+LA+A ++DQ+ L+ + + NL+ Q R PL++
Sbjct: 133 WNEQERSRIESIARTLAIACILDQRRTWLEVQLHQQQILQEKQQDLLDNLLHQFRNPLTA 192
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
++T K+L ++ + + ++ E I+ + DRL+ L++ + + L N+
Sbjct: 193 LRTFGKLLLKRLRPGDPNREVAESIVRESDRLQELLKKFDEVIDLGVENL---------- 242
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
+ PE + +E+ PPL L P
Sbjct: 243 ---APLKLPEQEEIFVEATVEKEHK------------------------PPL-LLPGTGE 274
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
C ++D+L L + + +A + Q+ + S LV AL + SN+I+ AL
Sbjct: 275 KEADCYITDILQPLLISAQAIAQERNLQLTANIPSDLPLVRANRKALTEVFSNIIDNALK 334
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
T GGKV I + V I D GP + L G + + + +
Sbjct: 335 YTPAGGKVLIEAGQQKDNLQGVAITDTGPGIPP--EDLAHLGERHYRGVQAQTEIPGTGL 392
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALG--SGGTRVELWLP 606
G+ +A++L+E + V SP A + GT +WLP
Sbjct: 393 -GIAIAKQLIEQMHGEIEVKSPALNLAITSPQTPGTTFIVWLP 434
>gi|298491547|ref|YP_003721724.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
0708]
gi|298233465|gb|ADI64601.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
0708]
Length = 458
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 149/334 (44%), Gaps = 55/334 (16%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I + LA+A ++DQ+ LQQ + + NL+ Q R PL++I+T K+L
Sbjct: 158 IAKILAIACILDQRRAWLQQQLHQQQVLQEEQRDLLDNLLHQFRNPLTAIRTFGKLLFKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
++ ++ + D+ I+ + DRL+ LQ+ + LT +++ +A PES
Sbjct: 218 LRPADQNRDVATSIVRESDRLQELLQQFDQVIDLTSSDL-------------TAIPLPES 264
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
S++ AK PPL L P + C ++D+L
Sbjct: 265 -------------------KVVVEASVEKDAK------PPLLL-PGTGEDVTDCYLTDLL 298
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + +A Q+R +EL +++ ++L LV ALR+ LSN+I+ AL T GG +
Sbjct: 299 LPLLISAQAIA--QERNLELIADIPENLPLVKANIKALREVLSNIIDNALKYTPAGGSIW 356
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 574
I + A + I+D+GP + L G + + + + G+ +A++L
Sbjct: 357 IQAGQKKANFQGIAINDNGPGIP--AEDLQHLGERRYRGVQAQTEIPGTGL-GIAIAKQL 413
Query: 575 LESYGCVVRVISPWKTD--AALGSGGTRVELWLP 606
+ + V SP +++ GT +WLP
Sbjct: 414 IAQMHGEIEVFSPAFNSNISSVQHPGTTFIIWLP 447
>gi|428318024|ref|YP_007115906.1| histidine kinase [Oscillatoria nigro-viridis PCC 7112]
gi|428241704|gb|AFZ07490.1| histidine kinase [Oscillatoria nigro-viridis PCC 7112]
Length = 463
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 148/355 (41%), Gaps = 81/355 (22%)
Query: 283 NICRSLAMAYVMDQKSMLLQQ---SSWQNNAR----MSNLVEQIRGPLSSIQTLSKMLSL 335
I R+LA+A ++DQ+S +QQ +S Q A+ M NL+ Q + PL++++T K+L+
Sbjct: 156 QIARTLALACILDQRSQWMQQELGTSRQIQAQVYDTMHNLLHQFKSPLTALRTFGKLLAR 215
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + ++ I+ + DRL+ L + V +A++ + + K M S E
Sbjct: 216 RLVPEDKNRNVAFSIVRESDRLQELLGQFDRTVDTGEAHLKLRSGTSEKAM-----SKVE 270
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SIR PLSL +PA ++E C V++V
Sbjct: 271 SIRH-------------------SPLSL-SPAANLE----------------ESCFVAEV 294
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + +A +R ++L ++ L V+ + ALR+ LSNLI+ AL T G ++
Sbjct: 295 LKPLLISAEAIA--SERNLKLVADIEANLPPVSANDRALREVLSNLIDNALKYTPAGRQI 352
Query: 514 EI-VSAAAPAGD---------ALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
I V A GD V + D G + P E E
Sbjct: 353 YIKVRYKAADGDRAGYSQLPAIAVAVSDTG-------SGIPPQDLEHLFERHYRGEKAQT 405
Query: 564 FVA----GLTVARELLESYGCVVRVISP----W----KTDAALGSGGTRVELWLP 606
+ GL +AR+L+ + V SP W +T GT +WLP
Sbjct: 406 EIPGTGLGLAIARDLVRQMQGEIEVFSPVNPEWLPSSETHLYPTDRGTTFVVWLP 460
>gi|412990732|emb|CCO18104.1| predicted protein [Bathycoccus prasinos]
Length = 461
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 10/187 (5%)
Query: 185 AEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSE 244
AE L +++ +P A+V P+ ++G LV ELPL ++ T P A G
Sbjct: 62 AETLLLNKEYFFLPSTNAMVVPLTLEGLLIGLLVGELPLPDIS---TNSPAAGFGSSGGG 118
Query: 245 EVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQS 304
+ S + + R +F +R N + + M ++++LL +
Sbjct: 119 KGKGK-----NRSKRRMNLNQNVDREEQFGERERQCLKNGAEAFVPVWAMQKRAVLLMKK 173
Query: 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEIS--YDIVEDIMVQGDRLRGTLQ 362
++ + + + R PLS+++T++ ML ++K E S D+ + IM QGD L Q
Sbjct: 174 TYAQEQNVGDYLYDSRVPLSALRTMTGMLKTYLKADEESPAGDMADAIMAQGDILATLSQ 233
Query: 363 ELQDAVF 369
+L+DA++
Sbjct: 234 QLEDALY 240
>gi|218247819|ref|YP_002373190.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8801]
gi|218168297|gb|ACK67034.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8801]
Length = 434
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 137/341 (40%), Gaps = 86/341 (25%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ Q+ Q R+ +L Q+R PL++++ SK+L
Sbjct: 151 IAKTLAIAGLLDRRQNWYQEQLRQQQGLKVQERDRLDDLFHQLRNPLTALRIFSKLLLKR 210
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+K E S IV+ I+ + D L QEL A F + V N K + S S P +
Sbjct: 211 LKSDEKSRSIVDSIIRESDHL----QELIQA-FEGDQDTVTLN----AKASLSCASLPSA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
LS P N+ DVL
Sbjct: 262 TSRTLS----------------------------------------------PVNIKDVL 275
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L +++ +A Q++Q++L +++ + L V ALR+ L+NLI+ A+ T GG+V
Sbjct: 276 DPLLISIKSIA--QEKQIDLKADIPRDLPSVYANSQALREVLNNLIDNAIKYTPKGGQVR 333
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA-------- 566
+ L+ I D ++ T +G L + + D A
Sbjct: 334 VEL-------GLISIIDQKTYQGILIED-TGYGIPLEDQAHIFDRHYRGIQAEGDISGTG 385
Query: 567 -GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL + ++L+ ++ V SP A GTR +WLP
Sbjct: 386 LGLAIVKDLVNQMEGIIEVFSPIN---AKQKKGTRFMVWLP 423
>gi|257060861|ref|YP_003138749.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8802]
gi|256591027|gb|ACV01914.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
8802]
Length = 434
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 137/341 (40%), Gaps = 86/341 (25%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++LA+A ++D++ Q+ Q R+ +L Q+R PL++++ SK+L
Sbjct: 151 IAKTLAIAGLLDRRQNWYQEQLRQQQGLKVQERDRLDDLFHQLRNPLTALRIFSKLLLKR 210
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+K E S IV+ I+ + D L QEL A F + V N K + S S P +
Sbjct: 211 LKSDEKSRSIVDSIIRESDHL----QELIQA-FEGDQDTVTLN----AKASLSCASLPSA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
LS P N+ DVL
Sbjct: 262 TSRTLS----------------------------------------------PVNIKDVL 275
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L +++ +A Q++Q++L +++ + L V ALR+ L+NLI+ A+ T GG+V
Sbjct: 276 DPLLISIKSIA--QEKQIDLKADIPRDLPSVYANSQALREVLNNLIDNAIKYTPKGGQVR 333
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA-------- 566
+ L+ I D ++ T +G L + + D A
Sbjct: 334 VEL-------GLISIIDQKTYQGILIED-TGYGIPLEDQAHIFDRHYRGIQAEGDISGTG 385
Query: 567 -GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL + ++L+ ++ V SP A GTR +WLP
Sbjct: 386 LGLAIVKDLVNQMEGIIEVFSPIN---AKQKKGTRFMVWLP 423
>gi|428214173|ref|YP_007087317.1| histidine kinase [Oscillatoria acuminata PCC 6304]
gi|428002554|gb|AFY83397.1| histidine kinase [Oscillatoria acuminata PCC 6304]
Length = 475
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 145/355 (40%), Gaps = 70/355 (19%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW-------QNNARMSNLVEQIRGPLSS 325
++ +R+ +I +++A+A ++D++ L Q + + + NL+ Q+R PL++
Sbjct: 167 WTDRERMQIESIAQTIAIACILDRRQRWLSQQLRQHQRLQAEQHDLLDNLLHQVRSPLTA 226
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
++T K+L ++ + + DI I+ + DR++ LQ++ A+
Sbjct: 227 LRTFGKLLLKRLREPDPNRDIAGSILRESDRVQELLQQMNLAI----------------- 269
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
PE I + L+ L L PA D+E
Sbjct: 270 -------EPEEIAGVPEVQTEVPSETPMLEKRSPQLLL--PAFDVE-------------- 306
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEP-ALRQALSNLIEGA 503
PC++ VL L + + +A +R +EL +++ L + + P ALR+ LSNLI+ A
Sbjct: 307 ---PCDILTVLEPLLISAQAIAS--ERHLELTTQIPAELPLVLASPKALREVLSNLIDNA 361
Query: 504 LMRTQVGGKVEIVSAAAPAGDALVV----IDDDGPDMHYMMHSLTPFGSELFSENMVEDN 559
L T GGK+ + + + + I D G + L + + +
Sbjct: 362 LKYTPSGGKIYVKVGDQHQIEGVTLMATAISDTG--IGIPPQDLEQLFQRYYRGVKAQSD 419
Query: 560 MTWNFVAGLTVARELLESYGCVVRVISP---------WKTDAALGSGGTRVELWL 605
+ + GL +AREL+ + V SP W+ + GT +WL
Sbjct: 420 IPGTGL-GLAIARELITQMQGKIEVFSPTPPQWQDPNWQNQPSSNHPGTTFIVWL 473
>gi|334121190|ref|ZP_08495264.1| histidine kinase [Microcoleus vaginatus FGP-2]
gi|333455476|gb|EGK84125.1| histidine kinase [Microcoleus vaginatus FGP-2]
Length = 463
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 147/356 (41%), Gaps = 82/356 (23%)
Query: 283 NICRSLAMAYVMDQKSMLLQQ---SSWQNNAR----MSNLVEQIRGPLSSIQTLSKMLSL 335
I R+LA+A ++DQ+S +QQ +S Q A+ M NL+ Q + PL++++T K+L+
Sbjct: 155 QIARTLALACILDQRSQWMQQELGTSRQIQAQVYDTMHNLLHQFKSPLTALRTFGKLLAR 214
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + ++ I+ + DRL+ L + V +A++ + + A S+ E
Sbjct: 215 RLVPEDKNRNVAFSIVRESDRLQELLGQFDRTVDTGEAHL-----KLRSGTSEKAISNVE 269
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
SIR PLSL +PA +++ C V++V
Sbjct: 270 SIRH-------------------SPLSL-SPAANLQ----------------ESCFVAEV 293
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + +A +R ++L ++L L V + ALR+ LSNLI+ AL T G ++
Sbjct: 294 LKPLLISAEAMA--SERNLKLVADLEADLPPVRANDRALREVLSNLIDNALKYTPAGRQI 351
Query: 514 EI-VSAAAPAGD---------ALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
I V A GD V + D G + P E E
Sbjct: 352 YIKVRYKAADGDRAGYSQLPAIAVAVSDTG-------SGIPPQDLEHLFERHYRGEKAQT 404
Query: 564 FVA----GLTVARELLESYGCVVRVISP----WKTDAALG-----SGGTRVELWLP 606
+ GL +AR+L+ + V SP W A GT +WLP
Sbjct: 405 EIPGTGLGLAIARDLVRQMQGEIEVFSPVNPEWLPSAETNLLYPTDRGTTFVVWLP 460
>gi|359461939|ref|ZP_09250502.1| histidine kinase [Acaryochloris sp. CCMEE 5410]
Length = 431
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/320 (22%), Positives = 131/320 (40%), Gaps = 62/320 (19%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I +LA+A ++DQ+S L + +Q A +SNL+ Q R PL++++TL K+L
Sbjct: 129 QIADTLALACILDQRSQWLANAQYQQRALQSEQHQTLSNLLHQFRNPLTALKTLGKLLHK 188
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + I I+ Q DRL L++ A+ + +A I
Sbjct: 189 RFGEDDNNRKIAASIVEQSDRLEEMLRQFDGAIDIGEAAI-------------------- 228
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
F + G+ Q + L P + E+ + P C D+
Sbjct: 229 -------EPFETDAWGSTPQPTPPALPPSLPLGEDELHLQP-------------CQFRDI 268
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L ++ + ++Q+ ++L+ S L + + ALR+ SNL + AL T GG+V
Sbjct: 269 LQPLIQSA--VGRVEQKDLQLTVRIPSNLPPINADLSALREVCSNLFDNALKYTPAGGEV 326
Query: 514 ------EIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
++ PA +++ D GP + LT + + ++ + G
Sbjct: 327 QVEVCRQVTEGRQPA--QFLLVSDSGPGIPQA--DLTRVFERQYRGVQAQTDIPGTGL-G 381
Query: 568 LTVARELLESYGCVVRVISP 587
L +AR L+E ++ SP
Sbjct: 382 LAIARTLMEQMQGDIQAFSP 401
>gi|209525211|ref|ZP_03273754.1| histidine kinase [Arthrospira maxima CS-328]
gi|209494396|gb|EDZ94708.1| histidine kinase [Arthrospira maxima CS-328]
Length = 467
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSETIARTETEEVESFGDPPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLNPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|376002454|ref|ZP_09780287.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
gi|375329194|emb|CCE16040.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
Length = 467
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSETIARTETEEVESFGDPPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLSPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|434396688|ref|YP_007130692.1| GAF sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
gi|428267785|gb|AFZ33726.1| GAF sensor signal transduction histidine kinase [Stanieria
cyanosphaera PCC 7437]
Length = 440
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 58/342 (16%)
Query: 277 QRLNAI-NICRSLAMAYVMD------QKSMLLQQSSWQ-NNARMSNLVEQIRGPLSSIQT 328
Q L I I ++LA+A +D QK + Q+S Q R+ +L+ QIR PL++++T
Sbjct: 138 QELEQIEKIAQTLALARFLDHRYQWYQKQLAKQESLRQIEQDRLDDLLHQIRNPLTALRT 197
Query: 329 LSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388
SK+L + + + + + I+ + DRL+ L++
Sbjct: 198 FSKLLIKRLLPEDRNQSVAKSILRESDRLQELLEQ------------------------- 232
Query: 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448
F E + +N LS + ++P L P + +
Sbjct: 233 ----------------FETETQQKEEENKALTLSTTSVRLTTDLPQSSHFLLPGNISELE 276
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
++ +VL L +++ +A Q+ ++ ++EL Q+L LV ALR+ L+NLI+ AL T
Sbjct: 277 AVSILEVLKILLISLQEIAAEQEIEL-IAELPQNLPLVIANAKALREVLNNLIDNALKYT 335
Query: 508 QVGGKVEIV---SAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
GGKV I P L + I D G + + P E + +
Sbjct: 336 PTGGKVVIYIIEKQEQPEQSWLGIAISDSGYGIPFEEQ---PKIFERHYRGIQAQSDIPG 392
Query: 564 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
GL +A++L+E G + +ISP + GT + +WL
Sbjct: 393 SGLGLAIAKDLVEKMGGKIEIISPNQLGKNTSLPGTTMIVWL 434
>gi|303281440|ref|XP_003060012.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458667|gb|EEH55964.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 650
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 15/192 (7%)
Query: 185 AEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELP-------LMELQMCGTEEPDAA 237
AEA L Q+V +P A+V P+ + +VG LV E+P + + + +
Sbjct: 213 AEALLVKQRVFALPSTNALVVPLSRDNALVGLLVGEMPEGGGWKRRVSARTRAKRAKEGS 272
Query: 238 IGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297
IGF+S EV + + A ++ D + F ++ R++ A+ M ++
Sbjct: 273 IGFESEPEVEVL----EEAAGAKDAADTAEV----FGDRRQAALTAAARAIVAAWAMHRR 324
Query: 298 SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRL 357
+ ++ +++ R++ + PL++++TL MLS H+K S D+ E ++ QG+ L
Sbjct: 325 ADYATAAAVRSDRRVAGFTYAAKEPLTALKTLGGMLSSHLKPDTPSRDMAEAMLAQGETL 384
Query: 358 RGTLQELQDAVF 369
+EL+ A++
Sbjct: 385 ASLSEELESALY 396
>gi|158334143|ref|YP_001515315.1| histidine kinase [Acaryochloris marina MBIC11017]
gi|158304384|gb|ABW26001.1| histidine kinase, putative [Acaryochloris marina MBIC11017]
Length = 451
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I +LA+A ++DQ+S L + +Q A +SNL+ Q R PL++++TL K+L
Sbjct: 149 QIADTLALACILDQRSQWLANAQYQQRALQSEQHQTLSNLLHQFRNPLTALKTLGKLLHK 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEET 382
E + I I+ Q DRL L++ A+ L +A I ++ +T
Sbjct: 209 RFGEDENNRKIAASIVEQSDRLEEMLRQFDGAIDLGEAAIEPFDTDT 255
>gi|423067846|ref|ZP_17056636.1| histidine kinase [Arthrospira platensis C1]
gi|406710589|gb|EKD05796.1| histidine kinase [Arthrospira platensis C1]
Length = 467
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 67/336 (19%)
Query: 234 PDAAIGFQSSEEVYAF---PP-----SFDTESHAIESFDHERM-----------RVYKFS 274
P I +EEV +F PP + D+ + H+RM R +
Sbjct: 84 PSENIARTETEEVESFGDQPPESDWQNVDSPQKQVLPLIHDRMVMGFLVTGRDDRPWNSQ 143
Query: 275 ADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQ 327
++L AI +L A ++D++S LQQ Q + L+ Q++ PL++++
Sbjct: 144 EQRQLRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALR 201
Query: 328 TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387
T K+L + + +Y + ++I+ Q DR+ LQ++ D N++ +
Sbjct: 202 TFGKLLLKRLSPDDRNYKLADNILSQSDRIEELLQQV-DRTAERGENLLSL---PFSSIG 257
Query: 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI 447
+S + E + N SRE ++ P+ L PA DI I
Sbjct: 258 DSQTATVEYV------NTSREPPTPVAKS---PVLL--PATDI----------------I 290
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMR 506
P V +++ L+ A +A +Q + ++E+ + V ALR+ +SNL++ AL
Sbjct: 291 EPIKVQEIINPLWTATCAIADERQL-ICIAEIPPKVPTVRGNAKALREVISNLLDNALKY 349
Query: 507 TQVGGKVEIVSAA------APAGDALVVIDDDGPDM 536
T GG++ + A PA + I D GP +
Sbjct: 350 TPPGGEIYLKVAQNYAIDHWPAPGVAIAISDTGPGI 385
>gi|113477356|ref|YP_723417.1| histidine kinase [Trichodesmium erythraeum IMS101]
gi|110168404|gb|ABG52944.1| histidine kinase [Trichodesmium erythraeum IMS101]
Length = 462
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 140/348 (40%), Gaps = 61/348 (17%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
+ ++ +A ++DQ+S L+Q Q M N++ Q++ PL++++T K+L
Sbjct: 147 VAHTITVACILDQRSQWLKQQFQQQQELQVQQFDTMHNILHQLKSPLTALRTFGKLLLKK 206
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ +++I I+ + DRLR ++++ + V K E L + Y E
Sbjct: 207 FLPEDKNWNITNSILRESDRLRELIEQIDETVDAGK--------EILSISAENQYFQGEE 258
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
I +D ++ PL L P N + V VL
Sbjct: 259 I-------------------------IDV-HQEANQKYKPLGLLP-GANFLESVFVQQVL 291
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI- 515
L + + +A+ +++ + ALR+ LSN+I+ AL T + G + I
Sbjct: 292 EPLLVSAKAIANENNIDLQVDFPDSLPTIKANSKALREVLSNIIDNALKYTPIQGNIYIK 351
Query: 516 VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFG------SELFSENMVEDNMTWNFVA--- 566
++ AP I+ + +M + S T +G LF N + N
Sbjct: 352 LATLAPQTSHHKSINSETEEMLAIAVSDTGYGISAKDLEHLFERNYRGEKAKTNIPGTGL 411
Query: 567 GLTVARELLESYGCVVRVISP----W-----KTDAALGSGGTRVELWL 605
GL +AR+L+ ++V SP W K + +GGT V +WL
Sbjct: 412 GLAIARDLINEMQGKIQVYSPVETEWLPSYLKEQDLVINGGTTVIIWL 459
>gi|384251843|gb|EIE25320.1| hypothetical protein COCSUDRAFT_40602 [Coccomyxa subellipsoidea
C-169]
Length = 293
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE- 341
+ R L++A ++Q++ L + + + LVEQ+RGPLS+++TL ML + R+E
Sbjct: 12 KVARVLSLACSLEQRAALERARDAARSRHIGGLVEQVRGPLSALRTLGAML---VPRTED 68
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQ 365
++ D+ + I+VQG+RL+ + ELQ
Sbjct: 69 VTRDVADGIVVQGNRLQDLVLELQ 92
>gi|428771937|ref|YP_007163725.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
gi|428686216|gb|AFZ46076.1| histidine kinase [Cyanobacterium stanieri PCC 7202]
Length = 420
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/342 (20%), Positives = 142/342 (41%), Gaps = 81/342 (23%)
Query: 284 ICRSLAMAYVMDQKSMLLQQ--SSWQN-----NARMSNLVEQIRGPLSSIQTLSKMLSLH 336
+ +++ A ++DQK + ++ +Q+ N + + Q+R PL++I+T K+L
Sbjct: 139 VAQTITFARLLDQKQQVSEEQLKRYQSLQKLQNDHLDDFFHQLRNPLTAIRTFGKLLIKR 198
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + +Y I E I+ +GDRL+ +Q+ + + + + ++N + ES
Sbjct: 199 LLGDDQNYTIAEGIVREGDRLKDLIQDFSE------------DWKVVNNISNPSLEQTES 246
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
L+ N R + +++ ++
Sbjct: 247 TSFFLTENIQR---------------------------------------LEKVDLNKLI 267
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV-- 513
L + + +A ++ +S++ + L L++ AL + L+NL++ A+ T GGK+
Sbjct: 268 IPLVQGISTIAK-EKSITFMSDIDEDLPLISTNPKALTEVLNNLLDNAVKYTPDGGKICL 326
Query: 514 EIVS-AAAPAGDALVV-IDDDG-----PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
EIV + PAG+ LV+ I D G D ++ E + E+
Sbjct: 327 EIVKQKSTPAGEKLVIEISDTGYGIPPEDQKHIF--------ERHYRGVQEEGNIHGTGL 378
Query: 567 GLTVARELLESYGCVVRVISP--WKTDAALGSGGTRVELWLP 606
GL + +EL + + + SP W + L GT L++P
Sbjct: 379 GLAIVKELCDKMSIDIELFSPSFWLKNQEL--NGTTFTLFIP 418
>gi|443662453|ref|ZP_21132942.1| his Kinase A domain protein [Microcystis aeruginosa DIANCHI905]
gi|443332096|gb|ELS46723.1| his Kinase A domain protein [Microcystis aeruginosa DIANCHI905]
Length = 418
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 115/310 (37%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q + WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLAEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + + N +P
Sbjct: 193 GNDRAITGILRESDRVRDLIAEFEAQIQQEREN------------------YP------- 227
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
++D P + P L P + + P N+ D+L L
Sbjct: 228 --------------------TVDIPLLQAQSS-PTAFLLPAGSSQLTPINLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIYGEDIALIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|428311851|ref|YP_007122828.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253463|gb|AFZ19422.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 488
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 49/241 (20%)
Query: 284 ICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I R+L++AY+MDQ+ +Q Q R+ +L+ Q+R PL++++T K+L
Sbjct: 150 IARTLSIAYIMDQRRAWFEQQLTQASRLKAQQRDRLDDLLHQLRNPLTALRTFGKLLFKR 209
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + + D+ I+ + DRL+ L+E F T N NE + A PE+
Sbjct: 210 LLPGDRNRDLASSILRESDRLQELLKE-----FDTYLNT---NETEQPPLLLPAAVQPEA 261
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456
+ N+ R + +++ VL
Sbjct: 262 SPRLGTGNWCRVTGEESSPSIIP------------------------------ISITAVL 291
Query: 457 GDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L + + +A Q+R + L S++ +L LV LR+ LSNLI+ AL T GGK++
Sbjct: 292 EPLIDTAKAIA--QERNLFLCSQIPSNLPLVRGNPKGLREVLSNLIDNALKYTPAGGKID 349
Query: 515 I 515
I
Sbjct: 350 I 350
>gi|409993251|ref|ZP_11276399.1| histidine kinase [Arthrospira platensis str. Paraca]
gi|291568944|dbj|BAI91216.1| two-component sensor histidine kinase [Arthrospira platensis
NIES-39]
gi|409935875|gb|EKN77391.1| histidine kinase [Arthrospira platensis str. Paraca]
Length = 467
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 152/388 (39%), Gaps = 80/388 (20%)
Query: 238 IGFQSSEEVYAFP-PS-----FDTESHAIESFD--HERM-----------RVYKFSADQR 278
I +EEV + P PS D ESH + H+RM R + ++
Sbjct: 88 IARTETEEVESVPDPSPESDWEDGESHQKQVLPLIHDRMVMGFLVTGRDDRPWNSQEQRQ 147
Query: 279 LNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSK 331
L AI +L A ++D++S LQQ Q + L+ Q++ PL++++T K
Sbjct: 148 LRAI--AHTLTTACILDRRSQWLQQEVRQQYQLQSQEYQTLQGLLHQLKSPLTALRTFGK 205
Query: 332 MLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAY 391
+L + + +Y + ++I+ Q DR+ LQ++ ++ E L + S
Sbjct: 206 LLLKRLSPDDRNYKLADNILSQSDRMEELLQQV---------DLTAERGENLLSLPFS-- 254
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCN 451
SI + N+ + + PA DI I P
Sbjct: 255 ----SIEDSQTATVEYVNTSPEPPTPVAKSPVLLPATDI----------------IEPIK 294
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
V +++ L+ A +A +Q + ++E+ Q V ALR+ +SNL++ AL T G
Sbjct: 295 VQEIINPLWTATCAIADERQL-ICIAEIPPQVPTVRGNAKALREVMSNLLDNALKYTPPG 353
Query: 511 GKVEIVSAA------APAGDALVVIDDDGPDMHYMMHSLTPFG--SELFSENMVEDNMTW 562
G++ + A P + I D GP + P G LF
Sbjct: 354 GEIYLKVAQNYAINHWPDPGVGIAISDTGPGI--------PPGDRDRLFERGYRGIQAQG 405
Query: 563 NFVA---GLTVARELLESYGCVVRVISP 587
N GL + ++LL+ ++V SP
Sbjct: 406 NIPGTGLGLAIVQDLLQPMQGEIQVYSP 433
>gi|425448782|ref|ZP_18828626.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
7941]
gi|389769417|emb|CCI05726.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
7941]
Length = 418
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 114/310 (36%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|425462136|ref|ZP_18841610.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9808]
gi|389824896|emb|CCI25775.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9808]
Length = 418
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 114/310 (36%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|425435679|ref|ZP_18816126.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9432]
gi|389679774|emb|CCH91492.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9432]
Length = 418
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 114/310 (36%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|218439642|ref|YP_002377971.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7424]
gi|218172370|gb|ACK71103.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7424]
Length = 442
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 141/347 (40%), Gaps = 76/347 (21%)
Query: 283 NICRSLAMAYVMDQKS-------MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A +DQ+ + ++ NL+ Q+R PL++++T K+L
Sbjct: 150 KIVKTLAIACFLDQRQEWYQQQLQQQYLKNAHQRDQLDNLLHQLRNPLTALRTFGKLLLK 209
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
E ++++ I+ + DR++ L++ F +++I+ T + + PE
Sbjct: 210 RFLPDEKDQNVIKGIIRESDRIQDLLRQ-----FEQQSDILPQEPST-----ATVITLPE 259
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + PL L P +ALA + P +V ++
Sbjct: 260 T-------------------ETHSPLLL-----------PSVALA------LEPVSVEEI 283
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLL-VAVEEPALRQALSNLIEGALMRTQVGGKVE 514
L L + + LA +Q QV +S++ +L + ALR+ SNLI+ A+ T GG++E
Sbjct: 284 LTPLLISAQALAQEKQIQV-ISKVPPNLPPIGANFKALREVFSNLIDNAIKYTPAGGEIE 342
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFG------SELFSENMVEDNMTWNFVA-- 566
VS GD D + S T +G + +F N
Sbjct: 343 -VSIVFRLGD----------DWEGIQISDTGYGIPREDQTHIFERRYRGVQAAGNIPGTG 391
Query: 567 -GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAPL 611
GL + ++L+E + ISP GT +W P + APL
Sbjct: 392 LGLAIVKDLVEQMQGKIEFISPNGKSQKQSLPGTTFIVWFPIAKAPL 438
>gi|425470883|ref|ZP_18849743.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9701]
gi|389883318|emb|CCI36261.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9701]
Length = 418
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 114/310 (36%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 SNDPAITGILRESDRVRDLIAEFEGQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQSS-PTAFLLPAGSSQLTPIDIHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLERIYGEDIPLIRANIPGLREVFSNLIDNALKYTAAGGKV-TVEVKNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|440752108|ref|ZP_20931311.1| his Kinase A domain protein [Microcystis aeruginosa TAIHU98]
gi|440176601|gb|ELP55874.1| his Kinase A domain protein [Microcystis aeruginosa TAIHU98]
Length = 418
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 114/310 (36%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTTFLLPAGSSQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLIRANIPGLREVFSNLIDNALKYTPAGGKV-TVEVQNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|411120056|ref|ZP_11392432.1| ATPase, histidine kinase/DNA gyrase B/HSP90-like protein
[Oscillatoriales cyanobacterium JSC-12]
gi|410710212|gb|EKQ67723.1| ATPase, histidine kinase/DNA gyrase B/HSP90-like protein
[Oscillatoriales cyanobacterium JSC-12]
Length = 487
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/422 (20%), Positives = 152/422 (36%), Gaps = 97/422 (22%)
Query: 180 AGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIG 239
A + A +Q + +QR +V P++ V G LV +
Sbjct: 113 ASTHSTTANAHTQMESAIADQRQIVLPLMHESMVFGLLVTQ------------------- 153
Query: 240 FQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSM 299
+ A E+++H+++ I +L++A VMDQ+
Sbjct: 154 ---------------RDDRAWEAWEHQQIE-------------RIATTLSLACVMDQRYQ 185
Query: 300 LLQQS-------SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMV 352
QQ Q M NL+ Q+R L+++QT K++ + + SY++ I
Sbjct: 186 WGQQEREQEKLVQLQQRDLMDNLLHQLRNSLTALQTFGKLILRRLVPGDRSYELATSITR 245
Query: 353 QGDRLRGTLQELQ---DAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSREN 409
+ +RLR Q+++ D L+ T + + P S QL
Sbjct: 246 ETERLRELAQQIELVLDVGLLS----------TPRALPPGDSDQPNSDEEQLG------- 288
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
+ + P + +P + L P + C V VL L + +A
Sbjct: 289 -----EATLDPRPIHA--------LPTVGLLPGVALTLERCLVETVLEPLLASATTIAQE 335
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL--V 527
+ + +S V ALR+ +NLIE A+ T G + V A P A +
Sbjct: 336 KNISIWVSLPDDLPPVWANPQALREVFNNLIENAIKYTPTNGHI-WVEADVPDNKAYLEI 394
Query: 528 VIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 585
+ D GP + ++H + + ++ + GL +AR L+E ++
Sbjct: 395 SVSDTGPGIPPDDLLHLFERYYRGVQAKGTIPGTGL-----GLAIARSLVEQMDGKIQAF 449
Query: 586 SP 587
SP
Sbjct: 450 SP 451
>gi|166364182|ref|YP_001656455.1| two-component sensor histidine kinase [Microcystis aeruginosa
NIES-843]
gi|425467066|ref|ZP_18846350.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9809]
gi|166086555|dbj|BAG01263.1| two-component sensor histidine kinase [Microcystis aeruginosa
NIES-843]
gi|389830238|emb|CCI27921.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9809]
Length = 418
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/310 (21%), Positives = 113/310 (36%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + I+ + DR+R + E + + Q
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQS-SPTAFLLPAGSGQLAPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLICANIPGLREVFSNLIDNALKYTPAGGKV-TVEVQNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|427709740|ref|YP_007052117.1| histidine kinase [Nostoc sp. PCC 7107]
gi|427362245|gb|AFY44967.1| histidine kinase [Nostoc sp. PCC 7107]
Length = 449
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 149/336 (44%), Gaps = 57/336 (16%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A V+DQ+ LQQ Q + NL+ Q R PL++++T K+L
Sbjct: 157 KIVQTLAIACVLDQRRAWLQQQLHQQQVLQEQQRDLLDNLLHQFRNPLTALRTFGKLLFK 216
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ +I+ + DRL+ LQ+ + + T +++ + + PE
Sbjct: 217 RLRPGDPNRDVGANIVRESDRLQELLQQFEQVIDWT-------------ELDVAPLALPE 263
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
N E + +Q KP+ L P + C ++D+
Sbjct: 264 -------NEVFVEAT---VQTEPKPI----------------LLLPGTGEKVTDCYLADL 297
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R ++L +E+ ++L LV AL++ LSN+I+ AL T GGK+
Sbjct: 298 LAPLLLSAKAIA--QERHLKLKTEIPKNLPLVRANIKALQEVLSNIIDNALKYTPKGGKI 355
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 573
I + I D GP + + G + + + + GL +A++
Sbjct: 356 FIQVGQERGNCIGIAISDTGPGIP--QEDIAHLGERHYRGVQAQTEIPGTGL-GLAIAKQ 412
Query: 574 LLESYGCVVRVISPWKTDAALGS---GGTRVELWLP 606
L+E + V SP ++A+ S GT +WLP
Sbjct: 413 LIEQMQGEIDVFSP-AINSAIASPDTPGTTFIIWLP 447
>gi|254415162|ref|ZP_05028924.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196177968|gb|EDX72970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 476
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 66/356 (18%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSW--------QNNARMSNLVEQIRGPLSSIQTLSKMLSL 335
I +L +AY+MD++ +Q W Q R+ +++ Q R PL++++T K+L
Sbjct: 150 IAGTLTLAYLMDRRRAWFEQE-WTQQRRLQVQQRDRLDDILHQFRNPLTALRTFGKLLLN 208
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + ++++ I+ + DRL+ LQ+ +E L + ++ S P
Sbjct: 209 RLQPDDKNHNVAASIVRESDRLKELLQDF---------------DECLDQ--DAPTSEPL 251
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
++ + S ++ P++ + E P + L P K + +++V
Sbjct: 252 TLPASASAATCPLPESDETGKIVSPVN-----SEPETDAPAIPLLPGKTLIVESFTITEV 306
Query: 456 LGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A +R +EL + Q L V ALR+ L+NLI+ AL T GG++
Sbjct: 307 LEPLLISAQAIAG--ERDLELRYSIPQDLPPVRANARALREVLNNLIDNALKYTPAGGQI 364
Query: 514 EIVSAAAPAGDAL-----VVIDDDG-----PDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
++ + D + I D G D+ ++ E + +
Sbjct: 365 DVEAGVGQPKDETRTMVGIAITDTGVGIPPQDIEHLF--------ERRYRGIQANTGIPG 416
Query: 564 FVAGLTVARELLESYGCVVRVI----SPW---KTDAAL------GSGGTRVELWLP 606
GL +A+ L+E + V SPW + D A+ + GT +WLP
Sbjct: 417 SGLGLAIAKTLIEQMQGQIEVFSPAQSPWTQLQLDVAIRRSGGKSTQGTTFVVWLP 472
>gi|307152216|ref|YP_003887600.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
gi|306982444|gb|ADN14325.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
Length = 436
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 61/244 (25%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNA-------RMSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+ +DQ+ +Q Q A R+ NL+ Q+R PL++++T K+L
Sbjct: 151 KIVKTLALGCFLDQRQEWYKQQLQQQYAKSAHQRDRLDNLLHQLRNPLTALRTFGKLLLK 210
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ E ++V+ I+ + DR++ L++ ++
Sbjct: 211 RLLADERDQNVVKGIIRESDRIQDLLRQFEE----------------------------- 241
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMP--MPPLALAPLKQNGIRPCNVS 453
N+ EN G K SL P P +P + L+ + +
Sbjct: 242 ------ENHLEGENIG-------KSTSLALPEAQANSPLLLPSITLS------LEFIAID 282
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE--PALRQALSNLIEGALMRTQVGG 511
+VL L + + LA Q++Q+ ++ + L A++ ALR+ L+NLI+ A+ T GG
Sbjct: 283 EVLTPLLISAQALA--QEKQIGVTSTIPTNLPAIKANFAALREVLTNLIDNAIKYTPAGG 340
Query: 512 KVEI 515
+V++
Sbjct: 341 QVDV 344
>gi|427718603|ref|YP_007066597.1| histidine kinase [Calothrix sp. PCC 7507]
gi|427351039|gb|AFY33763.1| histidine kinase [Calothrix sp. PCC 7507]
Length = 441
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/345 (22%), Positives = 138/345 (40%), Gaps = 77/345 (22%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------------MSNLVEQIRGPLSSIQTLS 330
I ++LA+A ++DQ+ +W + + NL+ Q R PL++++T
Sbjct: 148 IAQTLAIACILDQRR------AWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTALRTFG 201
Query: 331 KMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSA 390
K+L ++ + + ++ ++I+ + DRL+ L + + LT+A++ TL N
Sbjct: 202 KLLLKRLRTGDPNRNVADNIVRESDRLKELLLKFDQVIDLTEADLA-----TLSLPQNEV 256
Query: 391 YSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPC 450
+ + F +E KP L L G +
Sbjct: 257 F---------VEATFPKE---------TKPALL------------------LPGTGEQET 280
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQ 508
+ V A Q+R ++L +++ +SL V AL++ LSN+I+ AL T
Sbjct: 281 ECALADLLAPLLVSAKAIAQERNLQLKAKIPRSLPRVRANIKALQEVLSNIIDNALKYTP 340
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
GGK+ I A + I D GP + L G + + + + GL
Sbjct: 341 AGGKILIQVGREKANLQGIAISDTGPGIPP--EDLEHLGERHYRGVQAQTEIPGTGL-GL 397
Query: 569 TVARELLESYGCVVRVISPWKTDAALGSG-------GTRVELWLP 606
+A++L+E + V SP A+ S GT +WLP
Sbjct: 398 AIAKQLIEQMQGEIEVFSP-----AINSNITSPDTPGTTFIIWLP 437
>gi|425441829|ref|ZP_18822096.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9717]
gi|389717340|emb|CCH98539.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9717]
Length = 418
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 113/310 (36%), Gaps = 60/310 (19%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQL 401
+ + ++ + DR+R + E + + Q
Sbjct: 193 GNDPAITGMLRESDRVRDLIAEFEAQI------------------------------QQE 222
Query: 402 SNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461
S N+ ++D P + P L P + P ++ D+L L
Sbjct: 223 SENYP---------------TVDIPLLQAQSS-PTAFLLPAGSGQLTPIDLHDILDPLLL 266
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP 521
+ + +A + +E L+ P LR+ SNLI+ AL T GGKV V
Sbjct: 267 SAQAVAKERNLSLETIHGEDIPLICANIPGLREVFSNLIDNALKYTPAGGKV-TVEVQNV 325
Query: 522 AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA----GLTVARELLES 577
+V D G + + E + + GL +A+EL+ S
Sbjct: 326 KNSVEIVFKDTG-------YGIARSDQERIFQRHYRGVQAGGDIPGTGLGLAIAKELITS 378
Query: 578 YGCVVRVISP 587
G + ISP
Sbjct: 379 MGGTIEFISP 388
>gi|269836214|ref|YP_003318442.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
gi|269785477|gb|ACZ37620.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
Length = 477
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ +L L E RP A + Q+ L+ + V + L +ALSNL++ AL T
Sbjct: 303 PLDLGALLDRLVEGFRPQADTKGVQLTLTIPPEPCWVQGDTHLLTRALSNLLDNALRYTP 362
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
GG+V + P+G + I D GP + H L + L+ + T GL
Sbjct: 363 SGGQVRVACRTEPSG-VIFTIADTGPGIP--AHDLPNLFAPLYRGETSRNRRTGGAGLGL 419
Query: 569 TVARELLESYG 579
T+AR +L ++G
Sbjct: 420 TIARRILLAHG 430
>gi|384086221|ref|ZP_09997396.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus thiooxidans ATCC 19377]
Length = 501
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
VS++L DL + ++PL +Q Q L E L V + LRQ LSNL+ A +
Sbjct: 349 VKVSEILEDLLKRMQPLTEKKQ-QTLLCESHAPLEVYADPQRLRQILSNLVSNANKYSPA 407
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLT 569
GG++ + + A G L I+D+GP + +L E F + V +++ GL
Sbjct: 408 GGQIHVQAIAEQQG-VLFRIEDEGPG---IPEALLERVFERFYQVPVSNSLPRGTGLGLA 463
Query: 570 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
+ REL+ + W GG E+WLPS
Sbjct: 464 ITRELVAAQDG-------WIHIQNRPQGGLSAEIWLPS 494
>gi|402847643|ref|ZP_10895918.1| two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
gi|402502050|gb|EJW13687.1| two-component hybrid sensor and regulator [Rhodovulum sp. PH10]
Length = 586
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 30/169 (17%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ V+ ++ EA +PLA +Q+++ + + +SL +A + +R+A+ NL+ A+ +
Sbjct: 429 PADLAAVVREVVEANQPLAAKKQQEI-VVDAPKSLAIACDHDRIREAIDNLLSNAIKYSA 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM----------HYMMHSLTPFGSELFSENMVED 558
+GG+V + AA G A + + D GP M + S P G E S +
Sbjct: 488 IGGEVTVTLAATAEG-ARIAVTDAGPGMSEQDLSRLFGRFQRLSARPTGGE-SSTGL--- 542
Query: 559 NMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
GL++ + +++ +G V SP LG G T V L LP+
Sbjct: 543 --------GLSIVKRIVDLHGGTVSAESP-----GLGHGSTFV-LTLPA 577
>gi|119510142|ref|ZP_01629281.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
gi|119465203|gb|EAW46101.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
Length = 466
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 141/336 (41%), Gaps = 57/336 (16%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSL 335
I ++LA+A ++DQ+ LQ Q + NL+ Q R PL++I+T K+L
Sbjct: 151 KIAQTLAIACILDQRRAWLQHQLHQQQILQEQQRDLLDNLLHQFRNPLTAIRTFGKLLLK 210
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
++ + + D+ +I+ + DRL LQ+ + T+A+ + S PE
Sbjct: 211 RLRAGDPNRDVGANIVRESDRLEELLQQFDQVIDWTEADF-------------APKSLPE 257
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ RE P P L L P + C V D+
Sbjct: 258 H-EVFVEATVQRE------------------------PKPAL-LLPGTGDKETDCFVVDL 291
Query: 456 LGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L L + + +A Q+R ++L +E+ +L + AL++ SN+I+ AL T GGK+
Sbjct: 292 LTPLLVSAQAIA--QERHLQLKTEIPGNLPPIYANVKALQEVFSNIIDNALKYTPPGGKI 349
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 573
I A + I + G + L G + + + + + GL +A++
Sbjct: 350 LIQVGQEKANFQGIAISNTGSGIPP--EDLAHLGERHYRGVQAQTEIPGSGL-GLAIAQQ 406
Query: 574 LLESYGCVVRVISPWKTDAALGSG---GTRVELWLP 606
L++ + + SP ++++ S GT +WLP
Sbjct: 407 LIQQMQGEIEIFSP-AINSSMSSADAPGTTFIIWLP 441
>gi|428201817|ref|YP_007080406.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
gi|427979249|gb|AFY76849.1| signal transduction histidine kinase [Pleurocapsa sp. PCC 7327]
Length = 451
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 139/341 (40%), Gaps = 68/341 (19%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQN-------NARMSNLVEQIRGPLSSIQTLSKMLSL 335
I +++A+A ++D++ QQ Q R+ +L+ Q+R PL++++T K+L
Sbjct: 155 QIAKTIALACLLDRRQSWYQQQLSQQYRIRRLEKDRLDSLLHQLRNPLTALRTFGKLLLK 214
Query: 336 HMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPE 395
+ + + +V+ I+ + DRLR LQE + + T + N TL+ +A S P
Sbjct: 215 RLLPEDRNQSVVQGILRESDRLRELLQEFEADIDATADDT---NAVTLE---TNALSLPA 268
Query: 396 SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDV 455
+ + + ++ S + + K KD+ P
Sbjct: 269 A--ASVGDSPSLLLGNSLSLKATK-------VKDVLEP---------------------- 297
Query: 456 LGDLFEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKV 513
L ++ R +A Q++ + LS +L +L V ALR+ LSNLI+ AL T GG V
Sbjct: 298 ---LLDSARAIA--QEKDIHLSADLCATLPPVQANSKALREVLSNLIDNALKYTPAGGTV 352
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA------- 566
I + A D + + T +G L + + A
Sbjct: 353 HIATGLERA--------DGTGNWQGIAVCDTGYGIPLEDREHLFERHYRGVQAQGEIPGT 404
Query: 567 --GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
GL + REL+E + +ISP + GT +WL
Sbjct: 405 GLGLAIVRELVEQMHGKIDLISPNEMSQNPALPGTTFIVWL 445
>gi|386849141|ref|YP_006267154.1| histidine kinase [Actinoplanes sp. SE50/110]
gi|359836645|gb|AEV85086.1| histidine kinase [Actinoplanes sp. SE50/110]
Length = 618
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 11/147 (7%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
V L + S LV V+ +RQA+ NLI A+ T GG+++I+S + AG + + D G
Sbjct: 479 VTLHTTAASALVTVDPIRIRQAVGNLITNAIRHTPSGGRIDIISGTS-AGRLRIDVTDTG 537
Query: 534 PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
P + +L F + + T GL++ R+L E++ V V SP
Sbjct: 538 PGIPPEQQALV-F-ERFWRADKSRSRQTGGSGLGLSIVRKLAEAHAGTVTVTSP------ 589
Query: 594 LGSGGT-RVELWLPSPAPLSDLNGKSN 619
G G T R++L + P P S G+ +
Sbjct: 590 PGQGATFRIDLPVAGP-PGSQRAGRGS 615
>gi|311108365|ref|YP_003981218.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter xylosoxidans A8]
gi|310763054|gb|ADP18503.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter xylosoxidans A8]
Length = 458
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
Q+E+ E + L+ EE L++ + NL++ A + +V++ + AA G L+ IDDD
Sbjct: 338 QLEMPEFADGLVFRGEEQDLQEMVGNLLDNACKWAER--QVQVTALAADPGQLLIQIDDD 395
Query: 533 GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPWKTD 591
GP + +F + D GL + R+L +YG VR SP
Sbjct: 396 GPGIADEER------ERIFLRGVRMDEQRPGSGLGLDIVRDLATTYGGQVRAERSP---- 445
Query: 592 AALGSGGTRVELWLPS 607
GG RV LWLP+
Sbjct: 446 ----LGGLRVSLWLPA 457
>gi|198282750|ref|YP_002219071.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667905|ref|YP_002424945.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|415964791|ref|ZP_11558007.1| sensor histidine kinase [Acidithiobacillus sp. GGI-221]
gi|198247271|gb|ACH82864.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218520118|gb|ACK80704.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|339833033|gb|EGQ60908.1| sensor histidine kinase [Acidithiobacillus sp. GGI-221]
Length = 494
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V+DVL DL + ++PL ++ Q+ S+ L V + LRQ L+NL+ A + GG
Sbjct: 344 VADVLLDLQKRMQPLTD-KKNQILDCVGSEGLGVYADPQRLRQILTNLVSNAHKYSPAGG 402
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
+++ V A A G L + D+GP + +L E F + V + + GL +
Sbjct: 403 QIK-VRATAQQGGTLFCVSDNGPGIP---DALLERVFERFYQVPVSNRLPRGTGLGLAIT 458
Query: 572 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
REL+ + G +R+ + GG E+WLP+
Sbjct: 459 RELVGAQGGWIRMHNR-------PGGGLCAEIWLPA 487
>gi|428206544|ref|YP_007090897.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
gi|428008465|gb|AFY87028.1| histidine kinase [Chroococcidiopsis thermalis PCC 7203]
Length = 448
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 121/315 (38%), Gaps = 82/315 (26%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+ NL+ Q R PL++++T K+L + + + + ++I+ + DRL+ LQ+ + +T
Sbjct: 189 LDNLLHQFRNPLTALRTFGKLLLKRLLPGDANRAVADNIVRESDRLQELLQQFDRVIDMT 248
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
+ ++ +P PA ++
Sbjct: 249 EEDL-------------------------------------------EPTKSLPPATEVR 265
Query: 432 MPMP----PLALAPLKQNGIRP--CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL- 483
+P PL L P + G + C + DVL L + +A Q+R +EL ++L +L
Sbjct: 266 SAIPILNTPLPLLP-NREGTQSEICTIEDVLKPLLASAWAIA--QERNLELQADLPPNLP 322
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP--------- 534
V LR+ LSNL++ A+ T GGK+ + + + I D G
Sbjct: 323 AVRAHLRELREVLSNLLDNAIKYTPPGGKIYVQAGLERDNFQGIAISDTGVGIPPQDKER 382
Query: 535 --DMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP--WKT 590
D HY D+ GL +A+ L+E + V SP W
Sbjct: 383 IFDRHYRGRQ--------------ADSDIPGTGLGLAIAKALIEQMQGTIEVFSPALWHP 428
Query: 591 DAALGSGGTRVELWL 605
SGGT +WL
Sbjct: 429 TPE-SSGGTTFIVWL 442
>gi|443316934|ref|ZP_21046360.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
gi|442783464|gb|ELR93378.1| signal transduction histidine kinase [Leptolyngbya sp. PCC 6406]
Length = 489
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 155/368 (42%), Gaps = 63/368 (17%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQ-------QSSWQNNARMSNLVEQIRG 321
R +K + +L + +LA+A V+DQ+ +Q + Q + R+ +L+ Q+R
Sbjct: 149 RPWKVTERHQLE--RVAHTLALACVLDQRGQWIQAQLHEHRRDQAQQSERLHDLLHQVRN 206
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++++T K+L+ ++ S+ ++ + I+ + DR+ +++ Y ++
Sbjct: 207 PLTALKTFGKLLTKRLEPSDKNHPLAAGIVRESDRM---------------TDLLGYFDQ 251
Query: 382 TLKKMNN--SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLAL 439
L++ + +A + P + + + + ++ D E+P
Sbjct: 252 VLQRRDARLTAVTLPPLLPPAADSGSAASVALHR--------DWDLAFNSTELPRAGFG- 302
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSN 498
PL I+PC + ++L L +V LA Q Q ++ + ++L V +P ALR+ +
Sbjct: 303 GPL---AIQPCLLGNLLPALLASVPTLAVESQIQFQVV-IPENLAVISADPMALREVVMT 358
Query: 499 LIEGALMRTQVGGKVEIVSAAAP------AGDAL-----VVIDDDGPDMHYMMHSLTPFG 547
L+E A VG V + + P G A +++ D GP + + P
Sbjct: 359 LLENAFKYCPVGSLVWVEAGVKPPVGNHDTGGAARFYQGLLVGDTGPGIPVVDQ---PRI 415
Query: 548 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA-----LGSG----G 598
E + GL + +EL++ G V V SP T L SG G
Sbjct: 416 FERQYRGIQAQGTIPGTGLGLAIVQELVQRMGGWVDVYSPLSTWPGSLCLPLPSGACDRG 475
Query: 599 TRVELWLP 606
T +WLP
Sbjct: 476 TLFAVWLP 483
>gi|421481683|ref|ZP_15929266.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter piechaudii HLE]
gi|400199998|gb|EJO32951.1| periplasmic sensor signal transduction histidine kinase 2
[Achromobacter piechaudii HLE]
Length = 463
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 459 LFEAVRPLAHMQQR-------QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
L +AV+ L + QR ++E + +S L+ E+ L++ L NL++ A
Sbjct: 322 LQDAVQGLVRVMQRLYAQRGLRIEATGMSPGLVFRGEQQDLQEMLGNLLDNAC--KWAAN 379
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
+V I + A AG L+ IDDDGP + +F + D GL +
Sbjct: 380 QVRITAEPAAAGRLLLHIDDDGPGIEDHER------ERIFLRGVRMDEQLPGSGLGLDIV 433
Query: 572 RELLESYGCVVRV-ISPWKTDAALGSGGTRVELWLPS 607
R+L +YG VR SP GG RV LWLP+
Sbjct: 434 RDLAGTYGGEVRAGRSPL--------GGLRVSLWLPA 462
>gi|443312527|ref|ZP_21042144.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
gi|442777505|gb|ELR87781.1| signal transduction histidine kinase [Synechocystis sp. PCC 7509]
Length = 417
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 39/232 (16%)
Query: 394 PESIRSQLSNNFSRENSGNKLQNSCKPL--SLDTPAKDIEMPMPPLALAP---------- 441
P+ +++N RE+ ++LQ K ++D D+E ALAP
Sbjct: 204 PDDANRAVADNIVRES--DRLQELLKQFDRAIDLTVDDLEAQK---ALAPALTKVKSLPL 258
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
L + C V++VL L E+ R +A + ++E + V +E ALR+ LSN+I+
Sbjct: 259 LTAANSQLCVVANVLAPLVESARAIALERNLRLEADIPMNAPAVKADEGALRELLSNVID 318
Query: 502 GALMRTQVGGKVEIVSAAAPAGDAL--VVIDDDG-----PDMHYMMHSLTPFGSELFSEN 554
AL T GG++ I S GD+L + I D G D+ + E
Sbjct: 319 NALKYTPKGGQINIQSGI--WGDSLQGIAISDTGLGIPPADLGKVF--------ERHYRG 368
Query: 555 MVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
+ E++ GL +A+EL+ + V SP A GT+ +WLP
Sbjct: 369 VQENSAIPGTGLGLAIAKELVTQMQGEIEVFSP-----ASNGLGTKFIVWLP 415
>gi|428305252|ref|YP_007142077.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
gi|428246787|gb|AFZ12567.1| GAF sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Length = 827
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 15/163 (9%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
IRP N+ V+ +AVRP A+ + Q+EL S LV+ + ++Q L NL+ A+
Sbjct: 519 IRPVNLLPVIESAIDAVRPAANAKAIQLELVPNSSIGLVSADSDRIQQVLWNLLSNAIKF 578
Query: 507 TQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
T GGKV++ + + + V+D G ++ P+ E FS+ ++ +
Sbjct: 579 TPDGGKVKVQLDSTDSQVQIQVVDTGKGISPEFL-----PYVFERFSQADSTSTRSYGGL 633
Query: 566 A-GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 606
GL + R L+E +G V+ S LG G G +++P
Sbjct: 634 GLGLAIVRHLVELHGGTVKADS-------LGEGQGATFTIYIP 669
>gi|219848679|ref|YP_002463112.1| GAF sensor signal transduction histidine kinase [Chloroflexus
aggregans DSM 9485]
gi|219542938|gb|ACL24676.1| GAF sensor signal transduction histidine kinase [Chloroflexus
aggregans DSM 9485]
Length = 710
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS-- 542
V V+E +RQ L+NLIE A+ T GGK+ +VSA L+ + D G + +
Sbjct: 586 VIVDEDRIRQVLTNLIENAMKATPRGGKI-VVSAEQQQDQILIHVTDTGKGIASELWEKI 644
Query: 543 LTPFGSE----LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGG 598
PF S L ENM GLT+ R+L+E++G + W + +G G
Sbjct: 645 FDPFYSRGNGMLAGENM---------GVGLTICRQLVEAHGGKI-----WVAHSEVGK-G 689
Query: 599 TRVELWLP 606
TR LP
Sbjct: 690 TRFSFSLP 697
>gi|220932166|ref|YP_002509074.1| integral membrane sensor signal transduction histidine kinase
[Halothermothrix orenii H 168]
gi|219993476|gb|ACL70079.1| integral membrane sensor signal transduction histidine kinase
[Halothermothrix orenii H 168]
Length = 463
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 24/164 (14%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSEL---SQSLLVAVEEPALRQALSNLIEGALMRTQ 508
+++ L DL + P A +++Q++L + QS+ + E ALR NLI +L T
Sbjct: 313 LANFLEDLLNSYLPQA--REKQIDLIKKYNPEQSIFIDSNEDALRTIFGNLINNSLKYTP 370
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGP-----DMHYMMHSLTPFGSELFSENMVEDNMTWN 563
GGK+EI + ++ A++ + D+G D+ Y+ + + +
Sbjct: 371 EGGKIEI-TLSSKKNQAIISVKDNGTGISAEDLPYIFE-------RFYRADKSRSTRSGG 422
Query: 564 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
GLT+ REL+ S G ++I+ + G G T ++LPS
Sbjct: 423 TGIGLTITRELVNSIGG--KIIA---SSEGRGKGAT-FTVYLPS 460
>gi|428771377|ref|YP_007163167.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
gi|428685656|gb|AFZ55123.1| histidine kinase [Cyanobacterium aponinum PCC 10605]
Length = 415
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/333 (19%), Positives = 135/333 (40%), Gaps = 68/333 (20%)
Query: 284 ICRSLAMAYVMDQKSML-------LQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++A+A +++QK + LQ+ + + + + Q+R PL++I+T +K+L
Sbjct: 137 ITNTIAIARILEQKQQITVEKLSQLQKFRQLESDHLDDFLHQLRNPLTAIRTFAKLLLKR 196
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ + +Y + I + DR++
Sbjct: 197 LFVDDPNYSTSQSIYRESDRIK-------------------------------------- 218
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN--GIRPCNVSD 454
+L +FS + G +N + +LDT L +N + N+ +
Sbjct: 219 ---ELIADFSEQWQG---KNEEEIFTLDTLHTSF----------FLTENIENLEVVNIIN 262
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
V+ + E +R +A + QV L +++ + + + ALR+ ++NL++ A+ T GKV
Sbjct: 263 VIKPMLENIRIIAEEKNIQV-LEKINIDTEFILTNKKALREIINNLLDNAVKYTPNNGKV 321
Query: 514 EIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 573
I +V I D G + + T + + + N++ + GL + +E
Sbjct: 322 RIEIEQNKGDKIIVKIADTGYGI--PLEDQTHIFERHYRGSQINGNISGTGL-GLAIVKE 378
Query: 574 LLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
L + +++ISP++ GT L +P
Sbjct: 379 LADKINIKIKLISPFQWLENQVDNGTEFILEIP 411
>gi|393767917|ref|ZP_10356461.1| integral membrane sensor signal transduction histidine kinase
[Methylobacterium sp. GXF4]
gi|392726728|gb|EIZ84049.1| integral membrane sensor signal transduction histidine kinase
[Methylobacterium sp. GXF4]
Length = 544
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP ++ VL + + + A ++ + L SQ + + LRQ + +L++ AL
Sbjct: 371 RPLGLASVLAEAVDNMGSEAARRRVALSLDPGSQDVECLADREWLRQTVESLVDNALRHA 430
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
+ +VE+ +A P A + + DDGP L E F F G
Sbjct: 431 KGLTRVEVALSAEPGARARITVTDDGPGFGASEAELF----ERFRRGAGASPDETGFGIG 486
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSG----GTRVELWLPSPAPLSDLNGKSN 619
L +AR ++E +G ++R LG+G G RV L +P+ P ++ N
Sbjct: 487 LALARWIVEQHGGIIR----------LGAGPDGRGARVSLDMPALDPAWEIGTVGN 532
>gi|384262728|ref|YP_005417915.1| Sensor protein [Rhodospirillum photometricum DSM 122]
gi|378403829|emb|CCG08945.1| Sensor protein [Rhodospirillum photometricum DSM 122]
Length = 608
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P N+++V+ +R A + QV+ L + V +E A+RQ + NL+ A+ T
Sbjct: 443 QPVNIAEVIAACERMLRGRAREKNLQVDTLFLDEQSWVRADERAIRQIILNLLSNAVKFT 502
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFV 565
Q GG++ + G ++++ D G + ++ L PF ++ +
Sbjct: 503 QEGGQITVTVGQEANGGLVLMVADTGIGIPPEHLDLVLRPFHQVDAADTRRHEGTGL--- 559
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 612
GL +A+ L+E +G +R+ D+ +G GTRV + LP+ LS
Sbjct: 560 -GLPLAKALVEKHGGTLRL------DSKVGQ-GTRVMISLPTERVLS 598
>gi|452820149|gb|EME27195.1| two-component sensor histidine kinase [Galdieria sulphuraria]
Length = 505
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 47/282 (16%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
SNL+ Q + PL +I+T +K+L + +I+ ++V++I+ Q DRL+ L LQ
Sbjct: 238 FSNLLHQAQSPLMAIKTFAKLLLKRLPSEDINKELVQNILFQADRLQELLSPLQH----- 292
Query: 372 KANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIE 431
MN SH +S +S P+ L+ + E
Sbjct: 293 --------------MNERLLSHIKS----------------DTISSSIPIQLEASKESRE 322
Query: 432 MPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEE 489
L+ K + C + DV+ + +VR A +++ + S + + V+E
Sbjct: 323 AE----NLSSQKSISLHLCWLKDVIQPVLSSVRCFA--REKGIRFSSKIERDMPPCLVDE 376
Query: 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID--DDGPDMHYMMHSLTPFG 547
LR+ + N+ E A+ T GG + V + ++ V ID D G + + S F
Sbjct: 377 RMLREVVLNICENAIKFTPTGGVIR-VDCYWDSKNSCVSIDICDTGLGIPQVELSKV-FD 434
Query: 548 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWK 589
+ N+V + T GL++A E+++ + + SP K
Sbjct: 435 RGYRASNVVFNTATPGNGIGLSIAFEMVQKMRGNLSITSPGK 476
>gi|170078559|ref|YP_001735197.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
gi|169886228|gb|ACA99941.1| putative two-component sensor histidine kinase [Synechococcus sp.
PCC 7002]
Length = 438
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 59/260 (22%)
Query: 284 ICRSLAMAYVMDQKS-----MLLQQSSWQ--NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I L +A V+DQ+ L QQ Q +L+ Q+R P +I T K+L
Sbjct: 140 IAEGLVLACVLDQQKSWATERLTQQQHLQALEQEHFHDLLHQLRNPTMAISTFGKLLLKR 199
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPES 396
+ +E +Y + E I+ + DRL+G L + + V L A I
Sbjct: 200 LLPTEKNYPVAEGIVRESDRLKGLLTQFSEEVDLLTAQI--------------------- 238
Query: 397 IRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP---LALAPLKQNGIRPCNVS 453
QL S + +PP L+ AP + + P V+
Sbjct: 239 --PQLEGGPS-------------------------LALPPNGELSFAPDRSLSVEPLPVA 271
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
+V+ L ++ +A + + S V AL + L+NL+E AL T GG+V
Sbjct: 272 EVVLPLVASLGAIATERGITLNYRLPEPSPWVLGNHTALMEVLNNLLENALKYTPSGGQV 331
Query: 514 EIVSAAAPAGDALVVIDDDG 533
+ A A + + + D G
Sbjct: 332 -FLQVEAQAHELTIAVHDTG 350
>gi|332638567|ref|ZP_08417430.1| histidine protein kinase; sensor protein [Weissella cibaria KACC
11862]
Length = 456
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
LA +P + + + P NV+++ ++FEA +P A Q++ +E+S S V +E +RQ L
Sbjct: 296 LAKSPERLSKVAPVNVANIATEIFEANKPAADTLGLQLQ-NEISPSFTVNQDESVVRQIL 354
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+NLI A+ + GG V+ V+A A + ++ + D G
Sbjct: 355 TNLIVNAIKYNRPGGLVK-VAAMVTASEFVMAVKDTG 390
>gi|162456212|ref|YP_001618579.1| sensor histidine kinase [Sorangium cellulosum So ce56]
gi|161166794|emb|CAN98099.1| sensor histidine kinase [Sorangium cellulosum So ce56]
Length = 558
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 26/166 (15%)
Query: 447 IRPCNVSDVLGDLFEAVRP---LAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+ P V D++ +L VRP A + R VE+ E LL+ +E +RQAL NL+ A
Sbjct: 400 LEPERVDDLVQELVAFVRPELDRAGVAVR-VEVEEAGPELLL--DESQIRQALLNLLRNA 456
Query: 504 LMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS--LTPFGSELFSENMVEDNMT 561
GG++ +VS + +G A + +DD GP + + + PF F+ +
Sbjct: 457 REAMPKGGEI-VVSVSFSSGAATIAVDDTGPGVPEELRASIFDPF----FTTKQRGTGL- 510
Query: 562 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
GL V R+++E++G + P + +GGTR + LP+
Sbjct: 511 -----GLAVTRDIIEAHGGTI-SCEPRE------AGGTRFRIALPA 544
>gi|288940033|ref|YP_003442273.1| integral membrane sensor signal transduction histidine kinase
[Allochromatium vinosum DSM 180]
gi|288895405|gb|ADC61241.1| integral membrane sensor signal transduction histidine kinase
[Allochromatium vinosum DSM 180]
Length = 471
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ DL E PLA ++++++ + + S++V + L Q ++NL++ A+ TQ
Sbjct: 323 PVDLVPLIEDLVELYEPLAAEREQRLDWTAGASSIVVEGDRDLLFQVMANLVDNAIKYTQ 382
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG +++ +A G A V++ DDGP +
Sbjct: 383 PGGHIQLAVDSA-GGQARVLVADDGPGI 409
>gi|309782918|ref|ZP_07677638.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
gi|308918342|gb|EFP64019.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
Length = 508
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 80/179 (44%), Gaps = 43/179 (24%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 268 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 307
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 308 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 354
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L++A + PA LR+ALSNL+ A+ T GG++ V AAA ALV +DD GP M
Sbjct: 355 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRAAADGDTALVCVDDTGPGM 412
>gi|404397614|ref|ZP_10989404.1| hypothetical protein HMPREF0989_03784 [Ralstonia sp. 5_2_56FAA]
gi|348612615|gb|EGY62229.1| hypothetical protein HMPREF0989_03784 [Ralstonia sp. 5_2_56FAA]
Length = 509
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 80/179 (44%), Gaps = 43/179 (24%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 308
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 309 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 355
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L++A + PA LR+ALSNL+ A+ T GG++ V AAA ALV +DD GP M
Sbjct: 356 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRAAADGDTALVCVDDTGPGM 413
>gi|186472992|ref|YP_001860334.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
gi|184195324|gb|ACC73288.1| GAF sensor hybrid histidine kinase [Burkholderia phymatum STM815]
Length = 592
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 28/164 (17%)
Query: 459 LFEAVRPLAH---MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG---- 511
+++A+ L H ++ ++E+ L Q + V + L Q + NL+ A T GG
Sbjct: 295 IYDAITALKHHIDARKHRLEIEGLEQPVYVRADHVRLSQVVGNLLSNAAKYTPAGGTLRL 354
Query: 512 KVEIVSAAA-----PAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNF 564
+V+IV A P G + I+D+G M + H ELF+++ + +
Sbjct: 355 RVQIVPPGAADDESPGGKVSIAIEDNGVGMSREALDHVF-----ELFAQSQANMHRSEGG 409
Query: 565 VA-GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 606
+ GL VA+ L+E +G +R+ S G G GTRV L LP
Sbjct: 410 LGIGLAVAKRLIELHGGTIRLDSQ-------GVGHGTRVTLQLP 446
>gi|167033577|ref|YP_001668808.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
gi|166860065|gb|ABY98472.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
Length = 421
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V ++L + E R A M+Q QV L + + L+ E L + N+I A+ T VG
Sbjct: 273 DVVELLAQIVEDARFEAGMKQCQVSL-QAQGAFLIHGHEELLYRGFENIIRNAVRYTAVG 331
Query: 511 GKVEIVSAAAPAGDAL-VVIDDDGP--DMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
+V + +A AP G V + D GP D + PF + D+ F G
Sbjct: 332 TEVLVEAAMAPGGQWFQVCVSDHGPGVDPARLPRIFEPF-------DRGADSDGDGFGLG 384
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
L +A+ + +G + T A +GG RV + LP +P
Sbjct: 385 LAIAQRAIALHGGSI-------TAQAAATGGLRVRIELPQASP 420
>gi|119962088|ref|YP_948935.1| two-component sensor histidine kinase [Arthrobacter aurescens TC1]
gi|403528408|ref|YP_006663295.1| sensor histidine kinase ResE [Arthrobacter sp. Rue61a]
gi|119948947|gb|ABM07858.1| putative two-component sensor histidine kinase domains protein
[Arthrobacter aurescens TC1]
gi|403230835|gb|AFR30257.1| sensor histidine kinase ResE [Arthrobacter sp. Rue61a]
Length = 547
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 19/171 (11%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P ++ +L + +RPLA + V +E ++ + V +E L Q +N++ A+
Sbjct: 389 LKPVDIDKLLQVVVATLRPLAESRHVSVSFTEATEDIEVTADEAKLEQVFTNIVANAIKF 448
Query: 507 TQVGGKVEIVSAAAPAGD----ALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNM 560
T GG V I SA + + ALV I D+G + H + H LT F + +
Sbjct: 449 TPEGGSVGITSAMSATENGRLSALVRIADNGLGIPEHDLPHILTRF----YRASNATSAA 504
Query: 561 TWNFVAGLTVARELLESY-GCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
GL +A +++ + G +V D+ LGS GT V + LP P
Sbjct: 505 VPGSGLGLAIANDIIGRHMGRMV-------FDSTLGS-GTTVSVELPVGGP 547
>gi|328542626|ref|YP_004302735.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
[Polymorphum gilvum SL003B-26A1]
gi|326412372|gb|ADZ69435.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
[Polymorphum gilvum SL003B-26A1]
Length = 525
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 478 ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
EL+ L V + LRQ + L+E A+ ++ IV A A + + DDGP +
Sbjct: 388 ELAGDLFVDGDADWLRQVIGGLLENAIKYAGANCRISIVLTAREDA-AELWVRDDGPGLE 446
Query: 538 YMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG 597
+ +F D F GL +AR ++E +G +R++SPWK
Sbjct: 447 PRLQE------RVFERFARGDAGGRGFGVGLALARWIVEDHGGRIRLVSPWKD-----GR 495
Query: 598 GTRVELWLP 606
GT V + LP
Sbjct: 496 GTAVGVILP 504
>gi|386332235|ref|YP_006028404.1| sensory histidine kinase [Ralstonia solanacearum Po82]
gi|334194683|gb|AEG67868.1| sensory histidine kinase [Ralstonia solanacearum Po82]
Length = 503
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVRESLTAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQS 482
LALA + G + LG+L +V PLA +Q+ + +
Sbjct: 307 ----------LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 483 LLVAVEE-PA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L+ V PA LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 357 TLLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|116073055|ref|ZP_01470317.1| two-component sensor histidine kinase, phosphate sensing
[Synechococcus sp. RS9916]
gi|116068360|gb|EAU74112.1| two-component sensor histidine kinase, phosphate sensing
[Synechococcus sp. RS9916]
Length = 382
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Query: 441 PLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNL 499
P+ + P +S+++G + +VRPLA +QR + L+ + + L+ ++P L +A+ NL
Sbjct: 221 PIDSSAYSPLVLSELVGSAWSSVRPLA--EQRNISLTIQGEATALLRGDQPKLHRAILNL 278
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-----PDMHYMMH 541
++ AL + GG+VE V G L+ + D G PD+ M H
Sbjct: 279 LDNALRYSPEGGQVE-VDIQPSGGWWLLAVRDHGQGLSEPDLEQMFH 324
>gi|428216955|ref|YP_007101420.1| histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427988737|gb|AFY68992.1| histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 369
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
++Q ++NLI A+ T VGGK+ +V+ + + I D+GP + M L +F
Sbjct: 261 IKQVVNNLISNAIKYTPVGGKISVVALHRTSQKIQITISDNGPGIPEEMQQL------IF 314
Query: 552 SEN--MVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
+N + D+ + GL + + ++ S+ + V SP T G GG+ LP
Sbjct: 315 EDNYRLERDDAKDGYGIGLALCQRIIRSHYGQIWVDSPIGT----GQGGSSFHFTLP 367
>gi|407957788|dbj|BAM51028.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
Length = 409
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 272 KFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLS 324
++ ++ + I +SLA+A ++DQ+ +Q+ + N + ++L+ Q+R PL+
Sbjct: 108 QWHGEEMMQLEAIAKSLAVACLLDQQQDWYRQAWEEQNQQYQWERQHWADLLHQLRNPLT 167
Query: 325 SIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
+++T SK+L S +VE I+ QG+ L+ LQ +
Sbjct: 168 ALKTFSKLLLKRWHGDNKSQQVVEGIVRQGEHLQELLQSFE 208
>gi|223935939|ref|ZP_03627854.1| integral membrane sensor signal transduction histidine kinase
[bacterium Ellin514]
gi|223895540|gb|EEF61986.1| integral membrane sensor signal transduction histidine kinase
[bacterium Ellin514]
Length = 355
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
L LK+ +R +SD++ D +E + LA + Q+EL ++L++ + LRQ L
Sbjct: 197 GLITLKREKVR---LSDLVKDCYEDAQILAQSTKVQIELKSCDEALVLG-DRHRLRQLLL 252
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE 557
NL + A+ Q G V I A AG+A + I + GP + M L F +
Sbjct: 253 NLTDNAIKYNQENGSVAI-ELRAEAGEARLKISNTGPGIFPEM--LPRVFDRFFRCDAAH 309
Query: 558 DNMTWNFVAGLTVARELLESYGCVVRVIS 586
++ GL++A+ ++ ++G + +IS
Sbjct: 310 NSAVEGCGLGLSIAQWIVTAHGGRIEMIS 338
>gi|16329896|ref|NP_440624.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|383321639|ref|YP_005382492.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383324808|ref|YP_005385661.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383490692|ref|YP_005408368.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384435959|ref|YP_005650683.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803]
gi|451814055|ref|YP_007450507.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|1652382|dbj|BAA17304.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
gi|339272991|dbj|BAK49478.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803]
gi|359270958|dbj|BAL28477.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359274128|dbj|BAL31646.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359277298|dbj|BAL34815.1| sensory transduction histidine kinase Hik2 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|451780024|gb|AGF50993.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
Length = 434
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 272 KFSADQRLNAINICRSLAMAYVMDQKSMLL--------QQSSWQNNARMSNLVEQIRGPL 323
++ ++ + I +SLA+A ++DQ+ QQ W+ ++L+ Q+R PL
Sbjct: 133 QWHGEEMMQLEAIAKSLAVACLLDQQQDWYRQAWEEQNQQYQWERQ-HWADLLHQLRNPL 191
Query: 324 SSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
++++T SK+L S +VE I+ QG+ L+ LQ +
Sbjct: 192 TALKTFSKLLLKRWHGDNKSQQVVEGIVRQGEHLQELLQSFE 233
>gi|300702864|ref|YP_003744465.1| histidine kinase [Ralstonia solanacearum CFBP2957]
gi|299070526|emb|CBJ41821.1| Sensor protein, histidine kinase [Ralstonia solanacearum CFBP2957]
Length = 503
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVREGLAAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQS 482
LALA + G + LG+L +V PLA +Q+ + +
Sbjct: 307 ----------LALARARHTGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 483 LLVAVEE-PA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L+ V PA LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 357 TLLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|254253264|ref|ZP_04946582.1| regulatory protein GntR [Burkholderia dolosa AUO158]
gi|124895873|gb|EAY69753.1| regulatory protein GntR [Burkholderia dolosa AUO158]
Length = 293
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 14/139 (10%)
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLL 484
I MP+ P + P+K P V+D + D EA V P+ + Q +LSE Q
Sbjct: 52 ITMPVRPAIVHPMKNV---PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEELQ--- 105
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSL 543
+ +LR+ALS L ++R + G V + SA A A + PD + M ++L
Sbjct: 106 --ISRASLREALSTLEALGMLRIRAGKGVYVESAQATVAHAWRFAEQSSPPDTYQMRYAL 163
Query: 544 TPFGSELFSENMVEDNMTW 562
F + + + + +D++ W
Sbjct: 164 EGFAARMTAHVVTDDDIAW 182
>gi|387893363|ref|YP_006323660.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens A506]
gi|387160863|gb|AFJ56062.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens A506]
Length = 1385
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++ L D+ V H +Q ++ + L+V V+ + Q + NL+ AL T
Sbjct: 1086 QPIDLIRTLKDIHSVVLADGHRRQVSLQTPSVPGPLIVDVDPTRIEQVIWNLVNNALKFT 1145
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDD-GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
G+V++V + + L VID G + FG +EN + +
Sbjct: 1146 PEDGQVQLVVSRSDGRAQLDVIDSGAGLAQESLEEIFDLFGQ---AENQHQTHQREGLGI 1202
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL++ R+L+E++G V V S LG G T +WLP
Sbjct: 1203 GLSLVRQLVEAHGGSVSVHS-----RGLGFGCT-FSIWLP 1236
>gi|298291052|ref|YP_003692991.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
gi|296927563|gb|ADH88372.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
Length = 530
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 11/161 (6%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V D++ DL E+++P+A +E + + L++ + LRQ LI A+ + G
Sbjct: 371 VCDLITDLRESMQPVARAAGLTLETACMPDDLVIDADRDWLRQTFDGLIANAVRHSPPGE 430
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLT 569
V V AA AGD ++ + D G + + H F E F GL
Sbjct: 431 TVR-VEAAREAGDVVIRVSDHGTGIPSDDLPHVFERFWRGAAREGT-------GFGIGLA 482
Query: 570 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
+A+ +++ +G + + S D GGT V + LP+P P
Sbjct: 483 LAKWIVDRHGGRIEIDSR-VADGEGRRGGTCVTVRLPTPVP 522
>gi|428311772|ref|YP_007122749.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
gi|428253384|gb|AFZ19343.1| signal transduction histidine kinase [Microcoleus sp. PCC 7113]
Length = 1280
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEG 502
Q RPCN+ + + EA RP + ++ + LS +L++ V V+ + L NL+
Sbjct: 710 QASFRPCNLVQFVSQIVEAFRP--YCDKKNIRLSTQLTRCTSVYVDLEKFDKVLYNLLSN 767
Query: 503 ALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
A+ T+ GG + I AGD + + I D G + P E F + N +
Sbjct: 768 AMKFTEAGGNITI--KVESAGDHVRLQISDTGIGIK---KEQVPHLFERFRQAEGSVNRS 822
Query: 562 WNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
+ GL + +EL+E +G + V S + S GT +WL +
Sbjct: 823 YEGSGLGLALVKELVELHGGQISVESVY-------SEGTTFTVWLQT 862
>gi|56962304|ref|YP_174029.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
gi|56908541|dbj|BAD63068.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
Length = 439
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIE 501
+Q +RP ++ D+ + +RPLA QQ+ + +S + ++ ++ + L +AL+NL +
Sbjct: 284 QQKNVRPIDLKDLFQQTIDGLRPLA--QQKHISISTDFEENCMIRGDSHLLERALNNLFD 341
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
A+ T G + +V + + D GP + L LF + + T
Sbjct: 342 NAIRHTPSSGNI-VVRCYKEDANVTFSLKDTGPG--FSSEELERVFEPLFRGEVSRNRST 398
Query: 562 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
GLT+++ +++ +G + + GG + WLP
Sbjct: 399 GGSGLGLTISQRIIKQHGGELAAKNHL-------DGGAFISGWLPG 437
>gi|386011967|ref|YP_005930244.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
gi|313498673|gb|ADR60039.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
Length = 420
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGA 503
N +V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A
Sbjct: 267 NDFASVDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNA 324
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGP--DMHYMMHSLTPFGSELFSENMVEDNM 560
+ T+ G V + +A AP G L V + D GP D + PF S +
Sbjct: 325 VRYTKTGTAVLVKAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD------ 378
Query: 561 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
F GL +A+ + +G + T A +GG RV + LP
Sbjct: 379 --GFGLGLAIAQRSIALHGGSI-------TALAAATGGLRVRIELP 415
>gi|326319275|ref|YP_004236947.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376111|gb|ADX48380.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 461
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS------- 482
+E P ALA + Q+ +R +V + L L A R H + +V+L+EL++S
Sbjct: 270 LEGPAQAEALARIGQDALRAGHVLNQLLALARASRTRLHELEAEVDLAELARSVAADYAQ 329
Query: 483 --------LLVAVEEPA--------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
L VA + P L A+ NL+E AL T G +VEI + +A G A
Sbjct: 330 AAWQHGSALGVAADGPVAVRGNAVLLEMAVRNLVENALRHTPAGTRVEIQAGSAVGGGAW 389
Query: 527 VVIDDDG 533
+ + DDG
Sbjct: 390 LQVCDDG 396
>gi|284929408|ref|YP_003421930.1| signal transduction histidine kinase [cyanobacterium UCYN-A]
gi|284809852|gb|ADB95549.1| signal transduction histidine kinase [cyanobacterium UCYN-A]
Length = 439
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 7/102 (6%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQ-----KSMLLQQS--SWQNNARMSNLVEQIRGPL 323
Y + D+ I +LA+A +D+ K L QQ Q R+ NL Q+R PL
Sbjct: 134 YPWKQDELAQIKKIANTLAIARSLDKRQAFSKKQLHQQKLLHKQEYDRLENLFHQLRNPL 193
Query: 324 SSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
++++ K+L + E S+ +V++I+ +G+ L +QE +
Sbjct: 194 TALKIFGKLLLKRLVSDEQSFAVVKNIVREGEHLEDLIQEFE 235
>gi|167648307|ref|YP_001685970.1| integral membrane sensor signal transduction histidine kinase
[Caulobacter sp. K31]
gi|167350737|gb|ABZ73472.1| integral membrane sensor signal transduction histidine kinase
[Caulobacter sp. K31]
Length = 450
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
L E V A ++ELS + L + A ++AL+NLI+ A G V + S
Sbjct: 315 LIEGVCEGAQRAGARIELS-IGDDLSAILRPQAFKRALANLIDNAAAH---GETVRVSST 370
Query: 519 AAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 576
AAPAG + IDDDGP + + PF S N E + GL +AR++
Sbjct: 371 AAPAGGVWIFIDDDGPGIPEDRYEEAFRPFNRLDESRNQNEKGVG----LGLAIARDMAR 426
Query: 577 SYG 579
G
Sbjct: 427 GLG 429
>gi|148259864|ref|YP_001233991.1| integral membrane sensor signal transduction histidine kinase
[Acidiphilium cryptum JF-5]
gi|146401545|gb|ABQ30072.1| signal transduction histidine kinase [Acidiphilium cryptum JF-5]
Length = 441
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 31/138 (22%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL--VVIDD 531
++L+ L Q++ V A+R+ALSNL++ A IV AAAP G + +VIDD
Sbjct: 329 LDLAHLPQAV---VRPEAMRRALSNLLDNAARHAH-----RIVVAAAPEGGQMLRIVIDD 380
Query: 532 DGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPW 588
DGP + L PF E GL +AR+++ ++G +R+ SP
Sbjct: 381 DGPGIPAERREQMLRPF----------ESGSAAGTGLGLAIARDIVAAHGGTLRLDTSPL 430
Query: 589 KTDAALGSGGTRVELWLP 606
GG RV + +P
Sbjct: 431 --------GGLRVAITIP 440
>gi|326403208|ref|YP_004283289.1| two-component sensor histidine kinase [Acidiphilium multivorum
AIU301]
gi|325050069|dbj|BAJ80407.1| two-component sensor histidine kinase [Acidiphilium multivorum
AIU301]
Length = 441
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 31/138 (22%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL--VVIDD 531
++L+ L Q++ V A+R+ALSNL++ A IV AAAP G + +VIDD
Sbjct: 329 LDLAHLPQAV---VRPEAMRRALSNLLDNAARHAH-----RIVVAAAPEGGQMLRIVIDD 380
Query: 532 DGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPW 588
DGP + L PF E GL +AR+++ ++G +R+ SP
Sbjct: 381 DGPGIPAERREQMLRPF----------ESGSAAGTGLGLAIARDIVAAHGGTLRLDTSPL 430
Query: 589 KTDAALGSGGTRVELWLP 606
GG RV + +P
Sbjct: 431 --------GGLRVAITIP 440
>gi|241664448|ref|YP_002982808.1| histidine kinase [Ralstonia pickettii 12D]
gi|240866475|gb|ACS64136.1| histidine kinase [Ralstonia pickettii 12D]
Length = 508
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 80/180 (44%), Gaps = 43/180 (23%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQL-------- 308
Query: 427 AKDIEMPMPPLALAPLKQNGI-RPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQ 481
LALA + G P D LGDL V PLA +++Q +L
Sbjct: 309 ----------LALARARHAGQDAPAETFD-LGDLARDVVVDALPLA--REKQQDLGWDDG 355
Query: 482 SLLVA---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
L++A + PA LR+ALSNL+ A+ T GG++ V A A ALV +DD GP M+
Sbjct: 356 GLVMALPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRATADGDAALVCVDDTGPGMN 414
>gi|427714285|ref|YP_007062909.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
gi|427378414|gb|AFY62366.1| signal transduction histidine kinase [Synechococcus sp. PCC 6312]
Length = 431
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 135/323 (41%), Gaps = 72/323 (22%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSW----QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
+ +LA+ VMDQ+ L Q+ Q + NL+ Q R PL ++QTL+K+L ++
Sbjct: 155 QVANTLAIGCVMDQRHQWLSQAQAPTLAQQQDVLGNLLHQFRNPLMALQTLTKLLLKRLQ 214
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ + IVE I +G RL+ +++ Q
Sbjct: 215 APDKNRPIVESIWQEGQRLQSLVEQFQ--------------------------------- 241
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
L+ S PL+ T A L+LAP N +RP ++ +
Sbjct: 242 -------------ATLEASPHPLAPVTTAS--------LSLAPAALN-LRPTDLVGTIQP 279
Query: 459 LFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEP-ALRQALSNLIEGALMRTQVGGKVEI- 515
L AV+ A + ++ L E + L A+ +P AL+ + NL++ A T +GG++ +
Sbjct: 280 LLTAVQ--ARASESEITLKVEWAPQLPPALIDPIALQDIVGNLLDNACKYTSLGGEIHLQ 337
Query: 516 VSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 573
+P L+++ D GP + ++H G + + + + G+ +A+
Sbjct: 338 TRLLSPTTQGLLIV-DTGPGIPPGDLLH----LGERGYRGQQAQGTIPGTGL-GIAIAKN 391
Query: 574 LLESYGCVVRVISPWKTDAALGS 596
L+ G + + SP+ D+ G+
Sbjct: 392 LVAQMGGSLTIQSPFPPDSGQGT 414
>gi|302387090|ref|YP_003822912.1| integral membrane sensor signal transduction histidine kinase
[Clostridium saccharolyticum WM1]
gi|302197718|gb|ADL05289.1| integral membrane sensor signal transduction histidine kinase
[Clostridium saccharolyticum WM1]
Length = 345
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+SD+ D+++ A +Q+ + LS ++ + + + +A+SN+++ AL T
Sbjct: 196 PENISDMFNDIYQHFEFRAKGEQKTILLSG-PDNIELFCDRNWITEAISNIVKNALDHTD 254
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG++ I PA ++V D+G +H + H F FS++ T
Sbjct: 255 TGGRIAIEWKKLPAVTQIIV-RDNGSGIHPEDIHHIFKRFYRSRFSKD------TQGIGL 307
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRV 601
GL +A+ ++E++ + V D+ LG G V
Sbjct: 308 GLPLAKAIVEAHDGNITV------DSVLGGGSVFV 336
>gi|88703723|ref|ZP_01101439.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
gi|88702437|gb|EAQ99540.1| Heavy metal sensor kinase [Congregibacter litoralis KT71]
Length = 467
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ + +LF+ LA +++Q+EL ++ ++ + LR+ALSNL+ AL T
Sbjct: 302 PLDLAREVRELFDFFEALA--EEKQIELVSEGKTPIIQGDRAMLRRALSNLLSNALRHTS 359
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG+V + A + G AL+ + + GP +
Sbjct: 360 EGGRVLVGLALSGEGGALLSVQNPGPKI 387
>gi|427417191|ref|ZP_18907374.1| histidine kinase [Leptolyngbya sp. PCC 7375]
gi|425759904|gb|EKV00757.1| histidine kinase [Leptolyngbya sp. PCC 7375]
Length = 437
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 75/351 (21%), Positives = 131/351 (37%), Gaps = 66/351 (18%)
Query: 269 RVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQS-------SWQNNARMSNLVEQIRG 321
R ++ S Q L ++ SLA +D+++ L+Q + + NL+ Q R
Sbjct: 117 RPWQASEQQYLQTVST--SLAAGCFLDRQNQWLRQRLKTKQALQGEQSDVFHNLLHQFRN 174
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++I T K++ + + + +Y + + I+ + RL+ + + AV + A+I
Sbjct: 175 PLTAIGTFGKLMLRRLTQDDPNYRLADGIVRESQRLKELVTDFDAAVDIGDADIA----- 229
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
Q PL P +I+ PL A
Sbjct: 230 ---------------------------------QEVTPPL---LPPDNIDTSQKPLLPAL 253
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ--SLLVAVEEPALRQALSNL 499
+ I P + DV+ L A + RQ S L LV V+ AL++ ++NL
Sbjct: 254 GRSLEITPQRLEDVIHPLIMVTVAAASERNRQFWHSPLDGFPQTLVGVDAQALQEVIANL 313
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVE 557
++ A V ++ +VI D+GP + +H E +
Sbjct: 314 LDNAFKYAPHQEWVWLLGGLTKENYVGIVIGDNGPGIPAEDQVHLF-----ERHYRGIQS 368
Query: 558 DNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608
GL +A++L+ G + +ISP T A V W+P P
Sbjct: 369 QGTIGGTGLGLAIAKDLVIQMGGTIDLISPIWTQAT-------VPPWIPIP 412
>gi|427735327|ref|YP_007054871.1| histidine kinase [Rivularia sp. PCC 7116]
gi|427370368|gb|AFY54324.1| histidine kinase [Rivularia sp. PCC 7116]
Length = 459
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALS 497
L P KQ PC + ++ DL E LA+ Q+E S LS Q L V +E L + LS
Sbjct: 296 LIPTKQ----PCCLDILIEDLIEEFSALANASSLQLEYSILSHQPLYVMGDEDQLLRLLS 351
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
NLI A+ T GG + ++ GDA++ + D G
Sbjct: 352 NLIANAIQYTPAGGNINLI-LKKNNGDAVIEVIDTG 386
>gi|299065500|emb|CBJ36669.1| Sensor protein, histidine kinase [Ralstonia solanacearum CMR15]
Length = 500
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELSQSLLVAVEEP 490
LALA G P + LG+L +V PLA +Q+ + + S L+ +L V+
Sbjct: 304 LALARAHHAGQDPPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLAAALPVSGYPA 363
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
LR+ALSNL+ A+ T +GG++ V A A + ALV +DD GP M+
Sbjct: 364 FLREALSNLVHNAIRYTPLGGRI-TVRAIADSDAALVCVDDTGPGMN 409
>gi|434393275|ref|YP_007128222.1| adenylate/guanylate cyclase with GAF sensor(s) [Gloeocapsa sp. PCC
7428]
gi|428265116|gb|AFZ31062.1| adenylate/guanylate cyclase with GAF sensor(s) [Gloeocapsa sp. PCC
7428]
Length = 1124
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ + + + E+ RP + +++++EL +E + LV ++ + + NL+
Sbjct: 555 QPSFRPCDLLEFVSQIVESFRP--YCEKKELELITEFNPCPLVYLDTEKFDKVVYNLLSN 612
Query: 503 ALMRTQVGGKVEIVSAAAPAGD-ALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
A+ T GGK+ I AGD L+ ++D G + P + F + N +
Sbjct: 613 AMKFTPPGGKITI--RVETAGDHCLIQVEDTGIG---IAKEQIPHLFKRFHQAEAAVNRS 667
Query: 562 WNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
+ GL +A+EL+E + + V S ++ G++ +WLP
Sbjct: 668 YEGSGLGLALAKELIELHAGQISVESVYEK-------GSKFTVWLP 706
>gi|334341286|ref|YP_004546266.1| ATP-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334092640|gb|AEG60980.1| ATP-binding region ATPase domain protein [Desulfotomaculum ruminis
DSM 2154]
Length = 1033
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436
R+ +E L K ++ + + + + + + SG+ LSL K+I +
Sbjct: 431 RFKDEFLAKTSHEFRTPLHGVMTLVQSMLTSPASGSLTPEQTNKLSL---VKEISKRLAF 487
Query: 437 LA-----LAPLKQN--GIRPCNV-----SDVLGDLFEAVRPLAHMQQRQVELSELSQSL- 483
L L+ LKQ IRP NV S ++ ++F V P HM R +++S +
Sbjct: 488 LVEDIADLSKLKQGQLKIRPQNVDLHTISHLVTEVFAHVLP-GHMTLR----NQVSPHIP 542
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMH 541
V +E LRQ L+NLI+ A GG++E+ SA AG +V + D GP + +
Sbjct: 543 YVRADENRLRQILNNLIDNAAKHAGAGGEIEL-SAQEQAGFVVVSVKDAGPGIAPEELEK 601
Query: 542 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
P + + + GL +AR+L+E G + V S
Sbjct: 602 VFEP-----YQQGAIPSQRPGGVGLGLAIARQLVELQGGRIWVQS 641
>gi|337278687|ref|YP_004618158.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729763|gb|AEG92139.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis
TTB310]
Length = 551
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V D + E+ RPL +++S + L V + L Q + NLI A T G
Sbjct: 250 DVRDAVETALESCRPLIEASGHGLQVSLSPEPLCVEADRTRLSQVIGNLINNAAKYTPEG 309
Query: 511 GKVEIVSAAAPAGDALVVIDDDG----PDMHYMMHSLTPFGSELFS-ENMVEDNMTWNFV 565
G++E+ +A++ G +V + D+G PDM P ++FS E+
Sbjct: 310 GRIEL-AASSRDGQVVVSVSDNGAGIAPDM-------LPKVFDMFSQESRNLQRAQGGLG 361
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNG 616
GL + ++L+E +G V S A LG G T L LP+ A +L G
Sbjct: 362 IGLALVKQLVEMHGGTVVAHS-----AGLGHGST-FTLALPAAATGVELAG 406
>gi|172038240|ref|YP_001804741.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
gi|354554407|ref|ZP_08973712.1| GAF sensor signal transduction histidine kinase [Cyanothece sp.
ATCC 51472]
gi|171699694|gb|ACB52675.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
gi|353554086|gb|EHC23477.1| GAF sensor signal transduction histidine kinase [Cyanothece sp.
ATCC 51472]
Length = 430
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 72/355 (20%), Positives = 145/355 (40%), Gaps = 71/355 (20%)
Query: 267 RMRVYKFSADQRLNAINICRSLAMAYVMDQKS-------MLLQQSSWQNNARMSNLVEQI 319
R Y + ++ I +LA+A ++DQ+ L Q+ Q R+ +L Q+
Sbjct: 128 RREAYPWKPEEFNQIEKIADTLAIARLLDQRQGWYQKQLQLQQRQQQQERDRLDDLFHQL 187
Query: 320 RGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379
R PL++++ K+L + + S IV +I+ +G+ L+ ++E + + +V +
Sbjct: 188 RNPLTALKVFGKLLLKRLGTDDQSRSIVNNIVREGEHLQELIKEFESH----QKGMV--D 241
Query: 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLAL 439
E + +N ++ + P+ + L P++ +E+
Sbjct: 242 ETDIITLNTNSVAIPDRLSPSLP-----------------------PSQSLEL------- 271
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
P N+ D+L + + +A + +++ + V + ALR+ LSNL
Sbjct: 272 --------SPINLWDILETVIMSAESIAENKGIDLQVEKFDHLDAVLGNKSALREVLSNL 323
Query: 500 IEGALMRTQVGGKVEI-VSAAAPAGDAL---VVIDDDG-----PDMHYMMHSLTPFGSEL 550
I+ ++ T GKV I + + D ++I+D G D ++ E
Sbjct: 324 IDNSIKYTPASGKVRIKLGLSKVINDKRYQGILIEDTGYGIPREDQEHIF--------ER 375
Query: 551 FSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
E++ GL + +EL+ G ++ + SP + GTR+ LWL
Sbjct: 376 HYRGSQENSEIAGSGLGLAIVKELVTQMGGLIELSSPINLE---NKTGTRIILWL 427
>gi|399887600|ref|ZP_10773477.1| integral membrane sensor signal transduction histidine kinase
[Clostridium arbusti SL206]
Length = 471
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 80/165 (48%), Gaps = 18/165 (10%)
Query: 439 LAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQ 494
++ L+Q GI ++S + ++ + +P+ M+Q + +E+++ ++V +++ L+Q
Sbjct: 305 ISKLEQAGITLNKSKFDLSSEITNIVDTFKPI-FMKQNYLITTEITEKIIVYMDKDNLKQ 363
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-----PDMHYMMHSLTPFGSE 549
L NL+ A ++ G+V+ VS G ++ ++D+G D+ Y+
Sbjct: 364 ILYNLLSNANKYLEINGRVK-VSLFESRGYIVIEVEDNGIGISEKDLPYIFE-------R 415
Query: 550 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 594
+ ++ D + GLT+ + L+E+ G ++V S A
Sbjct: 416 FYRSDISRDKNSGGSGLGLTITKSLVEANGGKIQVKSKIGEGTAF 460
>gi|423691099|ref|ZP_17665619.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens SS101]
gi|388001622|gb|EIK62951.1| methylesterase, CheB family/methyltransferase, CheR family/sensor
histidine kinase/response regulator [Pseudomonas
fluorescens SS101]
Length = 1381
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++ L D+ V H +Q ++ + L+V V+ + Q + NL+ AL T
Sbjct: 1086 QPIDLIRTLKDIHSVVLADGHRRQVSLQTPSVPGPLIVDVDPTRIEQVIWNLVNNALKFT 1145
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDD-GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
G+V++V + L VID G + FG +EN + +
Sbjct: 1146 PEDGQVQLVVSRTDGRAQLDVIDSGAGLAADSLEKIFDLFGQ---AENQHQTHQREGLGI 1202
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL++ R+L+E++G V V S LG G T +WLP
Sbjct: 1203 GLSLVRQLVEAHGGSVSVQS-----RGLGFGCT-FSIWLP 1236
>gi|354586582|ref|ZP_09004987.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
gi|353180774|gb|EHB46318.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
Length = 769
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 20/172 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V +L D+ + AH+ +V+L S+ LV EE L+Q NL++ A G
Sbjct: 615 DVRGILRDVISFLDSQAHLYGVEVKLDFSSEPALVHCEENQLKQVFINLLKNAFEAMPDG 674
Query: 511 GKVEIVSAAAPAGD-ALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLT 569
G V I + P GD L+ I D+G H + L P E F N ++ T GL
Sbjct: 675 GTVTI-TLKRPEGDHVLITIQDEG---HGIPEELMPHLGEPFITN--KETGTG---LGLM 725
Query: 570 VARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAPLSDLNGKSNE 620
V++ +++ + + + S SG GT++ + LP+ A SD+ SN+
Sbjct: 726 VSQRIIQGHQGTLEIESK--------SGVGTKISIVLPA-ARQSDMEASSND 768
>gi|344198886|ref|YP_004783212.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrivorans SS3]
gi|343774330|gb|AEM46886.1| integral membrane sensor signal transduction histidine kinase
[Acidithiobacillus ferrivorans SS3]
Length = 494
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V++VL DL ++PL + + ++ + Q L V + LRQ L+NL+ A + G
Sbjct: 344 VAEVLVDLQNRMQPLTDKKNQTLDCNGAEQ-LSVYADPQRLRQILTNLVSNAHKYSPADG 402
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
++E+ + A G V D+GP + +L E F + V +++ GL +
Sbjct: 403 RIEVRATAQQKGVHFSV-SDNGPG---IPDALLERVFERFYQVPVSNSLPRGTGLGLAIT 458
Query: 572 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
REL+ + G +R+ + SGG E+WLP+
Sbjct: 459 RELVAAQGGWIRMHNR-------PSGGLCAEIWLPA 487
>gi|421529569|ref|ZP_15976099.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S11]
gi|402213001|gb|EJT84368.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S11]
Length = 420
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V ++L + E R A M+Q QV L + + + E L +A N+I A+ T G
Sbjct: 272 DVVELLAQIVEDARFEAGMKQCQVCL-QAQGTFITHGHEELLYRAFENIIRNAVRYTAAG 330
Query: 511 GKVEIVSAAAPAGDAL-VVIDDDGPDMH--YMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
+V + +A AP G L V + D GP + + PF + D+ F G
Sbjct: 331 TEVLVEAALAPGGQWLQVSVSDHGPGVEPARLQRIFEPF-------DRGTDSNGDGFGLG 383
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
L +A+ + +G + T A SGG RV + LP P
Sbjct: 384 LAIAQRAVALHGGSI-------TALAAASGGLRVRIELPQANP 419
>gi|225569041|ref|ZP_03778066.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
15053]
gi|225161840|gb|EEG74459.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
15053]
Length = 475
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 453 SDVLGDLFE-AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+V+ D+ A R + + QR + Q ++ ++ + Q L N+++ A+ TQ GG
Sbjct: 324 GEVIDDVINGAERHVIGLGQRDYHVVLPKQVIMAQMDGKMIMQVLVNILDNAVKHTQEGG 383
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHS--LTPFGSELFSENMVEDNMTWNFVAGLT 569
K+ I++A+ V I+DDGP + M F S L E+M + GL
Sbjct: 384 KI-ILTASFRRKRLYVSIEDDGPGIEEGMEEKIFDEFVS-LSGESM---DQKRGIGLGLA 438
Query: 570 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608
+ R+++ ++G + W + + GG R WLP+
Sbjct: 439 ICRQVVSAHGGEI-----WAENRS--EGGARFTFWLPAE 470
>gi|162456778|ref|YP_001619145.1| hypothetical protein sce8495 [Sorangium cellulosum So ce56]
gi|161167360|emb|CAN98665.1| unnamed protein product [Sorangium cellulosum So ce56]
Length = 919
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V+ V+ E+VRPL + + LS + + + V + L Q + NL+ A+ T G
Sbjct: 621 DVASVVMAAVESVRPLLVQRGHDLVLS-VDRGVFVHGDRVRLEQVVVNLLNNAIKYTNPG 679
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
G+V + + AA AGDA + + D G + + PF D GL
Sbjct: 680 GRVSL-ACAAIAGDARIRVTDTGVGISAELLPRVFEPF----MQARRTLDRSQGGLGIGL 734
Query: 569 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
T+ + L E +G V +S + GT + +WLP
Sbjct: 735 TLVKRLGELHGGRVEALSGGPGE------GTAISVWLP 766
>gi|126470035|dbj|BAF48120.1| hypothetical protein [Rhodococcus rhodochrous]
Length = 381
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ L S V V+ L Q L NL++ AL T GG V + S + G A ++I D G +
Sbjct: 256 ARLEDSAAVTVDPDRLGQVLGNLLDNALRHTPAGGAVTVTSRSGEHGHAQIIIADTGDGL 315
Query: 537 HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ L + + D GLT+AR L+ ++G + S
Sbjct: 316 AH--DELDHLFDRFYRVDTARDRGHGGSGIGLTIARALVTAHGGRISAYS 363
>gi|114561671|ref|YP_749184.1| periplasmic sensor signal transduction histidine kinase [Shewanella
frigidimarina NCIMB 400]
gi|114332964|gb|ABI70346.1| periplasmic sensor signal transduction histidine kinase [Shewanella
frigidimarina NCIMB 400]
Length = 485
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++ N+S++L D+ + P A Q++ +++ + + + +R+ L+NL++ AL
Sbjct: 333 LQQVNLSELLSDIEQTFTPRAKKLGVQLDF-DINHASQIYTDPALMRRILNNLVDNALRY 391
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTW-NFV 565
T GGK++IV+A G + + D G MH H + + E N +
Sbjct: 392 TPAGGKIQIVNAQHN-GQQWLTVRDTGAGMH--KHEVDALKQLSMTRLSFEANQSLPQLG 448
Query: 566 AGLTVARELLESYGCVVRVIS 586
GL + R+LL C + + S
Sbjct: 449 VGLAIVRQLLGLLKCRIEIDS 469
>gi|404497281|ref|YP_006721387.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|418065827|ref|ZP_12703197.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
gi|78194884|gb|ABB32651.1| sensor histidine kinase response regulator, HAMP domain-containing,
putative heme-binding site [Geobacter metallireducens
GS-15]
gi|373561625|gb|EHP87856.1| multi-sensor hybrid histidine kinase [Geobacter metallireducens
RCH3]
Length = 827
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA--------LRQALSNL 499
R +SD +L V L + + E +S S+LV E P LRQ L+NL
Sbjct: 392 RRLELSDEALELRSFVESLRRLFAVKAERENISLSILVGDEAPQFICGDPARLRQVLTNL 451
Query: 500 IEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVED 558
+ A+ T GG+V + + A PA G+ L + D G + H E+F + +
Sbjct: 452 LSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGIEKDKHERI---FEMFRQ--ADS 506
Query: 559 NMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL-PSPAPLSD 613
+ T N+ GL + R L+E G + V S A RV L L P+ P +D
Sbjct: 507 STTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAVF-----RVLLPLRPATGPPAD 560
>gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
flavus Ellin428]
Length = 786
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMR 506
RP +V++ + + EA+RP Q+ +++L E + V + + Q +SNL+ A+
Sbjct: 492 RPVDVNESIHRVVEALRPAIDQQRHELQLLLENDAKIWVDADPTRVEQIISNLLTNAIKY 551
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFV 565
T+ GG++ I A +A++ ++D G + M P +LF++ + D T
Sbjct: 552 TRKGGEIRI-EARREGHEAVISVNDTGIGIAPRM---LPQIFDLFTQGDHSLDRPTGGLG 607
Query: 566 AGLTVARELLESYGCVVRVIS 586
GL++ R L+E +G + S
Sbjct: 608 IGLSLCRRLVELHGGTITAFS 628
>gi|399909523|ref|ZP_10778075.1| integral membrane sensor signal transduction histidine kinase
[Halomonas sp. KM-1]
Length = 451
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDD 532
+E S Q+ + + AL QA+ N+I A + T GG V + P GD + IDD+
Sbjct: 322 IESSLPDQAEISGSSQRALAQAIENVIRNACLYTPGGGHVRVT--LQPDGDGYRLTIDDE 379
Query: 533 GPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 590
GP + + TPF + D+ GL +AR +E+ G +R
Sbjct: 380 GPGVADDQLELIFTPF----YRTVQARDDRPDGHGLGLALARRQIEAAGGWIRA------ 429
Query: 591 DAALGSGGTRVELWLP 606
A GG R+ LW P
Sbjct: 430 -ANRSGGGLRMTLWFP 444
>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
Nitrospira defluvii]
Length = 949
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
++ D+ E + PLA + +EL LLV ++ L Q L+NL++ A+ T GG+V
Sbjct: 662 LVSDVVEQLLPLAITKHLNIELQSPDPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVA 721
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 574
+ + A +VI D+G + +L F E + T GL + ++L
Sbjct: 722 VELSVDTHDMARIVIRDNGQGIPS--DALPKLFDPFFRVQQEERSQTKGLGLGLAIVKDL 779
Query: 575 LESYGCVVRVIS 586
++ +G + V S
Sbjct: 780 VDLHGGSITVRS 791
>gi|148547608|ref|YP_001267710.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|395449665|ref|YP_006389918.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
gi|397694775|ref|YP_006532656.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|148511666|gb|ABQ78526.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|388563662|gb|AFK72803.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
gi|397331505|gb|AFO47864.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
Length = 420
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 73/166 (43%), Gaps = 21/166 (12%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGA 503
N +V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A
Sbjct: 267 NDFASVDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNA 324
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGP--DMHYMMHSLTPFGSELFSENMVEDNM 560
+ T+ G V + +A AP G L V + D GP D + PF S +
Sbjct: 325 VRYTKPGTAVLVEAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD------ 378
Query: 561 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
F GL +A+ + +G + T A +GG RV + LP
Sbjct: 379 --GFGLGLAIAQRAIALHGGSI-------TALAAATGGLRVRIELP 415
>gi|224000551|ref|XP_002289948.1| hypothetical protein THAPSDRAFT_262298 [Thalassiosira pseudonana
CCMP1335]
gi|220975156|gb|EED93485.1| hypothetical protein THAPSDRAFT_262298 [Thalassiosira pseudonana
CCMP1335]
Length = 286
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLS 330
+K++ + +L +SLA+A MD + Q S Q ++ + Q++ PL +++T
Sbjct: 4 WKWTRNDKLQVSRAAKSLALALSMDTERASTQIQSEQFRMAFADSLHQVKSPLQALRTFG 63
Query: 331 KMLSLHMKRSEISYDIVEDIMVQGDRL 357
K+L + + + ED++ QG+R+
Sbjct: 64 KLLQRQLAEENSALKLAEDMVKQGERV 90
>gi|325107600|ref|YP_004268668.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
gi|324967868|gb|ADY58646.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
5305]
Length = 1074
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ +AVRP+A Q +++ +S Q ++V + + QAL NL+ A T+
Sbjct: 784 PVDLVQLIEQSLDAVRPVARQQNQELAVSLPKQPVIVHADSVRIMQALENLLNNACKYTE 843
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE-DNMTWNFVAG 567
GG++E+ A+V + D+G M + P +LF+++ D G
Sbjct: 844 EGGRIEL-RLTIQGVLAMVEVQDNGIGMD---PEILPVVFDLFTQSKRSLDRSQGGLGIG 899
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGT 599
LT+ + L++ + V S +G+G T
Sbjct: 900 LTLVKNLIDLHDGTVTAFSE-----GMGAGST 926
>gi|421895818|ref|ZP_16326217.1| transmembrane sensor kinase protein [Ralstonia solanacearum MolK2]
gi|206586983|emb|CAQ17567.1| transmembrane sensor kinase protein [Ralstonia solanacearum MolK2]
Length = 503
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQSLLVAVEE-PA 491
LALA + G + LG+L +V PLA +Q+ + + L+ V PA
Sbjct: 307 LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLDTLLPVSGYPA 366
Query: 492 -LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 367 FLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|83747532|ref|ZP_00944570.1| Two component system histidine kinase [Ralstonia solanacearum
UW551]
gi|207744493|ref|YP_002260885.1| transmembrane sensor kinase protein [Ralstonia solanacearum
IPO1609]
gi|83725846|gb|EAP72986.1| Two component system histidine kinase [Ralstonia solanacearum
UW551]
gi|206595899|emb|CAQ62826.1| transmembrane sensor kinase protein [Ralstonia solanacearum
IPO1609]
Length = 503
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQVELSELSQSLLVAVEE-PA 491
LALA + G + LG+L +V PLA +Q+ + + L+ V PA
Sbjct: 307 LALARARHTGEDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLDTLLPVSGYPA 366
Query: 492 -LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LR+ALSNL+ A+ T GG++ V A A G ALV +DD GP M
Sbjct: 367 FLREALSNLVHNAIRYTPPGGRI-TVRAIADGGAALVCVDDTGPGM 411
>gi|410614182|ref|ZP_11325232.1| two-component system, OmpR family, heavy metal sensor histidine
kinase CusS [Glaciecola psychrophila 170]
gi|410166222|dbj|GAC39121.1| two-component system, OmpR family, heavy metal sensor histidine
kinase CusS [Glaciecola psychrophila 170]
Length = 459
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ +S V+ ++ + P+A + +EL +++ V V+E L + NL+E A+
Sbjct: 315 VSTFKLSYVVKNVCSHIAPIAIDKNHDLELVVENENSTVDVDEGELTVIVKNLLENAIKH 374
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
T GGK+++ + L+ ++D G + + H + EN + +
Sbjct: 375 TSAGGKIKV-----TVSNKLITVEDSGNGIPEVFHQ--QIFERFWRENQSDRKGSG---L 424
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
GL + +EL+ Y +RV D+ G VE +
Sbjct: 425 GLAITKELVSHYNASIRV----SNDSTFGGAKFAVEFY 458
>gi|429887473|ref|ZP_19368990.1| putative two-component system sensor histidine kinase (Pho family)
[Vibrio cholerae PS15]
gi|429225464|gb|EKY31714.1| putative two-component system sensor histidine kinase (Pho family)
[Vibrio cholerae PS15]
Length = 465
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S+V+ ++ +A ++ ++E +++S L++ + L Q L NL++ A+ T+
Sbjct: 315 PTNLSEVVHNVASWYEDVAEEKEIKLE-TQVSDGLIIVSDPDKLVQVLVNLVDNAIKYTE 373
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN---FV 565
G V I + GDA++ + D G + H L +F DN N +
Sbjct: 374 PKGYVLIKAERVTDGDAVIQVTDTGIGIDPKYHDL------VFERLYRVDNSRSNIGGYG 427
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGS 596
GL+ A ++E+ G + + K+D +GS
Sbjct: 428 LGLSFAAAIIENIGGTISL----KSDVGVGS 454
>gi|410457320|ref|ZP_11311134.1| integral membrane sensor signal transduction histidine kinase
[Bacillus bataviensis LMG 21833]
gi|409925356|gb|EKN62572.1| integral membrane sensor signal transduction histidine kinase
[Bacillus bataviensis LMG 21833]
Length = 457
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 9/152 (5%)
Query: 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVE 514
VL L+E P+ + +++ E Q + ++ L Q LSN++ AL T G V
Sbjct: 312 VLAALWEMFSPIFKEKGVGLQIKEPDQEEMFEADKDRLMQVLSNILNNALKYTPEGKNVT 371
Query: 515 IVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 574
I G +I D+G M + + + D T GL++ + L
Sbjct: 372 ISVVTEKDGYVGFMIQDEGSGMK--EEDIPHIFERFYRGDKSRDRKTGGVGIGLSIVKAL 429
Query: 575 LESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
++++ V++V S + GT + LW P
Sbjct: 430 MDAHKGVIKVKSRL-------NKGTSITLWFP 454
>gi|389721742|ref|ZP_10188470.1| multi-sensor signal transduction histidine kinase [Rhodanobacter
sp. 115]
gi|388446867|gb|EIM02886.1| multi-sensor signal transduction histidine kinase [Rhodanobacter
sp. 115]
Length = 449
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL-MRTQVGGKVEIV 516
DL V LA ++QR E +SL V + L QAL NL+ A+ GG+V V
Sbjct: 313 DLAALVGKLAKLEQRLPVRVEPGESLAVQADADQLEQALINLLHNAVEAALTTGGEVR-V 371
Query: 517 SAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 576
AG A+V ++DDGP + PF F+ + GL +A+++ E
Sbjct: 372 RWHREAGRAIVAVEDDGPGPPSSENLFVPF----FTTKPGGSGI------GLALAQQIAE 421
Query: 577 SYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608
++ V +++ + DAA G +LWLP P
Sbjct: 422 AHEGGVSLLA--RDDAA----GAVAQLWLPLP 447
>gi|444912485|ref|ZP_21232647.1| hypothetical protein D187_04583 [Cystobacter fuscus DSM 2262]
gi|444716919|gb|ELW57758.1| hypothetical protein D187_04583 [Cystobacter fuscus DSM 2262]
Length = 786
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
PLA + +E+ L ++ LV + +RQ +SNL+ A+ T GGKVE V G
Sbjct: 505 PLARQKGLTLEMV-LQETPLVQADPRRMRQVVSNLLSNAVKFTPPGGKVE-VRLEPERGG 562
Query: 525 ALVVIDDDGPDMHYMMHSL--TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 582
+V+ D G L +PF E E N GL + R+L+E G V
Sbjct: 563 VCIVVQDTGRGFPSEFQPLLFSPFRQE--EEGTTRANGGLGL--GLAIVRQLVELQGGTV 618
Query: 583 RVISPWKTDAALGSGGTRVELWLPS 607
SP + AL +WLP+
Sbjct: 619 WAESPGRGQGAL------FTVWLPA 637
>gi|338739930|ref|YP_004676892.1| two-component sensor histidine kinase [Hyphomicrobium sp. MC1]
gi|337760493|emb|CCB66326.1| putative two-component sensor histidine kinase [Hyphomicrobium sp.
MC1]
Length = 462
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
VEL +L + +E ALR+ +NLI+ AL + G K V+A A G V+IDDDG
Sbjct: 327 VELELPGNTLTLMGDEVALRRLFTNLIDNAL---RYGAKAPKVTAGAIGGRVRVLIDDDG 383
Query: 534 PDMHYMMHSLT--PFGSELFSENMVEDNMTWNFVAGLTVARELLESY-GCVVRVISPWKT 590
P + +L PF + T GL +A++++E + G + SP
Sbjct: 384 PGIPVAERALVFEPF----YRREPSRSRETGGSGLGLAIAKQIVELHNGSITLGDSP--- 436
Query: 591 DAALGSGGTRVELWLP 606
GG RV + LP
Sbjct: 437 -----RGGLRVIVELP 447
>gi|119718739|ref|YP_925704.1| ATPase domain-containing protein [Nocardioides sp. JS614]
gi|119539400|gb|ABL84017.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
Length = 471
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 42/186 (22%)
Query: 452 VSDVLGDLFEAVR--PLAHMQQ-------------------RQVELSELSQSLLVAVEEP 490
++ ++GDL E R PL H+ + V +++ V E
Sbjct: 299 MTTLIGDLMELARDEPLTHVVEPVDVPELVDRAIARVRRRAAGVTFDVVAEPWFVVGESA 358
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGS 548
L +A++NL++ A + GG V + A ++ +DDDGP + + H F
Sbjct: 359 GLERAVTNLLDNAAKWSPAGGTVRVRLAG-----GVLTVDDDGPGISEEDLPHVFDRFYR 413
Query: 549 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-S 607
S +M + GL++ R++ E + V W A +GG R+ LWLP S
Sbjct: 414 SQESRSMPGSGL------GLSIVRQVAERHSGTV-----WA--GAAPTGGARLTLWLPGS 460
Query: 608 PAPLSD 613
AP+ D
Sbjct: 461 RAPVPD 466
>gi|134294725|ref|YP_001118460.1| GntR family transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|134137882|gb|ABO53625.1| transcriptional regulator, GntR family [Burkholderia vietnamiensis
G4]
Length = 258
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 14/139 (10%)
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLL 484
I MP+ P A+A + +N P V+D + D EA V P+ + Q +LSE
Sbjct: 17 ITMPVRP-AIAQIMKNV--PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE----- 68
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSL 543
+ + +LR+ALS L ++R + G V + SA A A A + PD + M ++L
Sbjct: 69 LEISRASLREALSTLEALGMLRIRAGKGVYVESAQASAAHAWQFAEQSSPPDTYQMRYAL 128
Query: 544 TPFGSELFSENMVEDNMTW 562
F + + + + +D++ W
Sbjct: 129 EGFAARMAAHVVTDDDIAW 147
>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
[Methanococcus vannielii SB]
gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
[Methanococcus vannielii SB]
Length = 641
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 38/163 (23%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
NV D + D+ E + PLA ++ ++L + + LL+ ++ + Q +NLIE A+ +
Sbjct: 487 NVKDTVSDVIEYLTPLA--TEKNIKLKQDIKDLLINADKDRITQVFTNLIENAIKFSPAN 544
Query: 511 GKVEIVSAAAPAGDALVVIDDDGP-----------DMHYMMHSLT---PFGSELFSENMV 556
+ I+ GD + + D+G D Y + S T GS L
Sbjct: 545 ESIMIIGKETENGDVHITVKDNGAGIPKKDLEKIFDQFYQVDSSTKRKKGGSGL------ 598
Query: 557 EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
GL V + +++++G + W ++ LG G T
Sbjct: 599 ----------GLAVCKSIIQAHGGTI-----W-VESELGRGST 625
>gi|26990086|ref|NP_745511.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida KT2440]
gi|24985015|gb|AAN68975.1|AE016529_6 sensor histidine kinase [Pseudomonas putida KT2440]
Length = 419
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 21/161 (13%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQ 508
+V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A+ T+
Sbjct: 271 VDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNAVRYTK 328
Query: 509 VGGKVEIVSAAAPAGDAL-VVIDDDGP--DMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
G V + +A AP G L V + D GP D + PF S + F
Sbjct: 329 PGTAVLVEAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD--------GFG 380
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL +A+ + +G + T A +GG RV + LP
Sbjct: 381 LGLAIAQRAIALHGGSI-------TALAAATGGLRVRIELP 414
>gi|392379905|ref|YP_004987063.1| two-component sensor histidine kinase ChvG [Azospirillum brasilense
Sp245]
gi|356882272|emb|CCD03278.1| two-component sensor histidine kinase ChvG [Azospirillum brasilense
Sp245]
Length = 582
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMH 541
S+ V E L Q NLI AL + GG+V++ + P G V + DDGP +
Sbjct: 460 SMTVKGLEGRLTQVFQNLIANALSFSPPGGQVQLATRRTPDGAVEVTVSDDGPGI----- 514
Query: 542 SLTPFGSE------LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDA 592
P G E ++E + + GL+++++++E++G +R + D
Sbjct: 515 ---PEGKEEAIFERFYTERPAGEKFGTHSGLGLSISKQIVEAHGGTIRAANRLGRDG 568
>gi|58039170|ref|YP_191134.1| phosphate regulon sensor protein PhoR [Gluconobacter oxydans 621H]
gi|58001584|gb|AAW60478.1| Phosphate regulon sensor protein PhoR [Gluconobacter oxydans 621H]
Length = 404
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL-MRTQV 509
+V+D++ + V P + R ++L E+ LLV +E + Q L NLIE AL Q
Sbjct: 236 DVADLMAVVLGEVAPRFEQEGRTLKL-EIENDLLVRADEDEMVQVLLNLIENALRYGAQE 294
Query: 510 GGKVEIV----SAAAP------AGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDN 559
G + I AA+P G ++ I+D+G M H L + D
Sbjct: 295 GDPLTITLSARRAASPDDRWPADGGVILGIEDNGCGME--AHHLPRLTERFYRVGAPTDG 352
Query: 560 MTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLP 606
GL++ R +L+ +G +R+ S P K GT +WLP
Sbjct: 353 AGQGTGLGLSIVRHILDRHGGRLRIASAPGK--------GTTCLVWLP 392
>gi|344943144|ref|ZP_08782431.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344260431|gb|EGW20703.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 872
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 22/172 (12%)
Query: 437 LALAPLKQNGIR----PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L +A + Q IR ++D++ + E RPL +++++ +S+ + + L
Sbjct: 569 LDMARIMQGKIRLKIEHFELTDIVNNAIETSRPLLESRKQELIISQTMTPQWLEGDHVRL 628
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMMHSLTPFGS 548
Q LSNL+ A T GGK+ ++S DA++ I D G PD + P
Sbjct: 629 AQVLSNLLNNAAKYTGEGGKI-MLSVMRKGSDAVIEIKDTGIGISPD-------ILPQIF 680
Query: 549 ELFSE-NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
+LF++ + + GLT+ R+L+E +G V S +G G T
Sbjct: 681 DLFTQADHTLAHSQGGLGIGLTLVRQLVEIHGGTVTAASE-----GIGQGST 727
>gi|298244598|ref|ZP_06968404.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
gi|297552079|gb|EFH85944.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
Length = 285
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
PC+ S + G++ E R + RQ+EL +++ + L Q + NL+ AL +
Sbjct: 122 PCDFSKICGEVVENQRTYS---GRQIELQLPPDPIIIQADGKRLTQVVINLVSNALHYSL 178
Query: 509 VGGKVEIVSAAAPAGDALVV--IDDDGP--DMHYMMHSLTPFGSELFSENMVEDNMTWNF 564
+ ++S A DA V+ + ++GP + H PF ++E + W
Sbjct: 179 ---EDTVISIGAHVEDASVLFQVHNEGPALSLEQQSHLFDPFYRTPYAETFFREG--WGL 233
Query: 565 VAGLTVARELLESYGCVVRVIS 586
GLTV++E++E +G + V S
Sbjct: 234 --GLTVSKEIVERHGGQIWVKS 253
>gi|254521607|ref|ZP_05133662.1| sensor protein TorS [Stenotrophomonas sp. SKA14]
gi|219719198|gb|EED37723.1| sensor protein TorS [Stenotrophomonas sp. SKA14]
Length = 773
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 442 LKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQAL 496
L G RP CNV+ + +A+RP A ++ Q+ + +VA++ ALRQ +
Sbjct: 372 LAGGGFRPRADACNVASLCRQSLDAIRPQARLKGLQLRFDCNPDPVPVVALDSEALRQIV 431
Query: 497 SNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDD-GPDMHYMMHSLTPFGSELFS 552
NL+ A+ T VGG +V++ P L VID G D ++ H F
Sbjct: 432 DNLLGNAVKFTDVGGIDLRVQLAPPIEPRTLVLDVIDSGIGIDARHIGHLFRAF------ 485
Query: 553 ENMVEDNMTWNFVAGLTVAREL 574
+ M GL++AREL
Sbjct: 486 QQGEGGQMRGGSGLGLSIAREL 507
>gi|421520959|ref|ZP_15967619.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
gi|402755236|gb|EJX15710.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
Length = 420
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 72/161 (44%), Gaps = 21/161 (13%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQ 508
+V ++L + E R A M+Q QV L L+Q + L+ E L +A N+I A+ T+
Sbjct: 272 VDVVELLAQIVEDARFEAGMKQCQVSL--LAQGAFLMHGHEELLYRAFENVIRNAVRYTK 329
Query: 509 VGGKVEIVSAAAPAGDAL-VVIDDDGP--DMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
G V + +A AP G L V + D GP D + PF S + F
Sbjct: 330 PGTAVLVEAAPAPGGQWLQVCVSDHGPGVDPARLQRIFEPFDRGTDSSD--------GFG 381
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL +A+ + +G + T A +GG RV + LP
Sbjct: 382 LGLAIAQRAIALHGGSI-------TALAAATGGLRVRIELP 415
>gi|398336909|ref|ZP_10521614.1| chemotaxis protein histidine kinase [Leptospira kmetyi serovar
Malaysia str. Bejo-Iso9]
Length = 726
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 18/98 (18%)
Query: 456 LGDLFE----AVRPLAHMQQRQVEL------SELSQSLLVAVEEPA---LRQALSNLIEG 502
+ DLFE VR L+ +QVEL +EL +S++ + +P LR AL + IE
Sbjct: 399 IADLFEKYKRVVRDLSKELNKQVELEIIGGETELDRSVIEKIADPIVHILRNALDHGIET 458
Query: 503 ALMRTQVG----GKVEIVSAAAPAGDALVVIDDDGPDM 536
A R Q G GK++I A+ G L+VI DDG +
Sbjct: 459 AEERIQKGKPATGKLQI-QASHGTGSILIVIQDDGKGL 495
>gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3
str. Alaska E43]
gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3
str. Alaska E43]
Length = 681
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+SD+ + F ++ LA+ + ++ L+ ++ ++ L+Q L NLI ++ T+ GG
Sbjct: 522 ISDIAMESFSVLKSLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGG 581
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFVA---G 567
K++I A L +I+D+G + +F+E V+++ + G
Sbjct: 582 KIQINITKNLAYMKL-IIEDNGIGIK------KEDQKRIFNEFEQVDNSYERKYEGTGLG 634
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 615
L + ++L+E +G + +IS T GT++ + +P + ++ N
Sbjct: 635 LPLTKKLVEMHGGEIFLISNIGT-------GTKIIITIPFQSEENNYN 675
>gi|388567334|ref|ZP_10153768.1| histidine kinase [Hydrogenophaga sp. PBC]
gi|388265356|gb|EIK90912.1| histidine kinase [Hydrogenophaga sp. PBC]
Length = 499
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + DVL E PL + + + ++V + L Q SNL+ A T
Sbjct: 209 PVAMQDVLRHAVELSLPLIDAHAHHLTMDIPDERVVVHGDSVRLTQVFSNLLNNAAKYTP 268
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFVAG 567
GG++ + A A A V + D+GP + M +LF + N G
Sbjct: 269 RGGELALSLQHADA-QARVTVSDNGPGIPPDMREAV---FDLFVQVNDASRAAQGGLGIG 324
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 612
LT+ R L+E +G V K D+A G+GGTR+ + LP L+
Sbjct: 325 LTLVRSLVELHGGTV------KADSAGGTGGTRMVVRLPWAGTLA 363
>gi|381397458|ref|ZP_09922868.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
gi|380775026|gb|EIC08320.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
Length = 380
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD-DGPDMHYMMHSL 543
++V+ L Q +NL++ AL T GG V + +A P G VV DD +G D ++ H
Sbjct: 255 LSVDPDRLGQVFANLLDNALRHTPAGGTVRLSAARTPTGVRFVVADDGEGIDHAHLPHLF 314
Query: 544 TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 582
F + + D GL+V R L+ ++G V
Sbjct: 315 ERF----YRVDSARDRAHGGSGIGLSVTRALVHAHGGTV 349
>gi|254419144|ref|ZP_05032868.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Brevundimonas sp. BAL3]
gi|196185321|gb|EDX80297.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Brevundimonas sp. BAL3]
Length = 473
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LA+A L+ G +P + ++ D+ E P A + + ++ S E+ L++ +P L
Sbjct: 301 LAIARLQAGGAPDPKPMDAGELAADMAELYEPAA--EDKSIDFSSEVETGLMIEGNQPFL 358
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
QAL+NLI+ A+ T GG V++ + +G+ + D GP
Sbjct: 359 AQALANLIDNAIKYTPAGGAVKLRARRRSSGEIEYSVTDTGP 400
>gi|91974848|ref|YP_567507.1| periplasmic sensor signal transduction histidine kinase
[Rhodopseudomonas palustris BisB5]
gi|91681304|gb|ABE37606.1| signal transduction histidine kinase [Rhodopseudomonas palustris
BisB5]
Length = 563
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
L Q +SNL+ A + GGKV+IV + +V+DDDGP + E F
Sbjct: 448 LGQVISNLLSNAQSFSHPGGKVQIVCRRRKT-EIEIVVDDDGPGIRDDAFEKI---FERF 503
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS---PWKTDAALGSGGTRVELWLPS 607
+ N GL+++++++E++G +R + P D S G R + LPS
Sbjct: 504 YTDRPHQGFGQNSGLGLSISKQIVEAHGGKIRAENRPGPRDADGEPTSAGARFVVRLPS 562
>gi|67923216|ref|ZP_00516703.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
[Crocosphaera watsonii WH 8501]
gi|67854947|gb|EAM50219.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
[Crocosphaera watsonii WH 8501]
Length = 429
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQ-------NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ ++ + R+ +L Q+R PL++++ K+L
Sbjct: 145 IADTLAIACLLDQRGEWYERQLQRQQLKQQQERDRLDDLFHQVRNPLTALKVFGKLLLKR 204
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQ--DAVFLTKANIVRYNEETLKKMNNSAYSHP 394
+ E S IV++I+ +G+ L+ +++ + + + + ++ N E++ +N ++S P
Sbjct: 205 LGGDEQSSSIVKNIVQEGEHLQDLIKDFESYENSLINEEEVITLNTESVDISDNLSFSLP 264
Query: 395 ES 396
S
Sbjct: 265 AS 266
>gi|424892203|ref|ZP_18315783.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|424893569|ref|ZP_18317149.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393183484|gb|EJC83521.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393184850|gb|EJC84887.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 468
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 29/160 (18%)
Query: 458 DLFEAVRPL--AHMQQ---RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL +A R + AH ++ R ++L E+S+ + V + LR+ L NLI+ A+ T+ G
Sbjct: 323 DLSKAAREILEAHAEEALRRNIDLGLEVSRPVFVEGDGTMLREMLVNLIDNAIRYTRADG 382
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGS-----ELFSENMVEDNMTWNFVA 566
+V + A G A++ ++D+GP + P G E F M +
Sbjct: 383 RVTVAVGQAD-GRAVITVEDNGPGI--------PEGEREQVFERFYRIMGTEAEGSGL-- 431
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL + RE+ E G V + DA GG V +WLP
Sbjct: 432 GLAIVREVAEGAGGSVSL-----EDA--NGGGLVVTVWLP 464
>gi|418048854|ref|ZP_12686941.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium rhodesiae JS60]
gi|353189759|gb|EHB55269.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium rhodesiae JS60]
Length = 380
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSE 549
L Q L+NL++ AL T+ GG V + SA A + + + DDG + ++ H F
Sbjct: 259 LAQVLNNLLDNALRHTRTGGHVRL-SAERTANEVVFTVSDDGEGIAAEHLRHVFERF--- 314
Query: 550 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609
+ + GL +A+ L E++G + V SP LG GGT + +PS
Sbjct: 315 -YRADSARHRGQGGSGIGLAIAKALTEAHGGTIIVTSP-----GLG-GGTTFTVSIPSQP 367
Query: 610 PLSDLNGKSNET 621
G E+
Sbjct: 368 MAGARRGNQRES 379
>gi|298294322|ref|YP_003696261.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
gi|296930833|gb|ADH91642.1| integral membrane sensor signal transduction histidine kinase
[Starkeya novella DSM 506]
Length = 618
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHY 538
S +V + L Q ++NLI+ A T GG+V + DA+ +++DDDGP +
Sbjct: 477 SDEFIVPGHDSRLGQVINNLIDNARSFTPKGGEVRVTCRRHR--DAVEIIVDDDGPGIP- 533
Query: 539 MMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 582
H+LT +++ E N GL+++R+++E++G +
Sbjct: 534 -PHALTRIFERFYTDRPEEQGFGQNSGLGLSISRQIVEAHGGRI 576
>gi|389877915|ref|YP_006371480.1| sensor histidine kinase [Tistrella mobilis KA081020-065]
gi|388528699|gb|AFK53896.1| sensor histidine kinase [Tistrella mobilis KA081020-065]
Length = 500
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 126/293 (43%), Gaps = 33/293 (11%)
Query: 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSL-HMKRSEISYD-IVEDIMVQGDR 356
+ L S W+N + + +IR + ++ S+M + + S+D +V D+ +
Sbjct: 214 LWLFTSVWRNIRGFAGVARRIRKDPGTQRSFSEMNRVPELNDVARSFDDMVRDLRGTAET 273
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
+R T +E A F T ++ + E LK+ S PE ++ S + ++
Sbjct: 274 MRRTAEENAHA-FKTPIAVISQSIEPLKR------SIPE-------DDLRGRRSLDLIER 319
Query: 417 SCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVE 475
S + L L A+ IE + L P P N+S +L D+ + + A +
Sbjct: 320 SVQRLDVLVNAARRIEETVADLLNPPRT-----PLNLSALLEDIVDEYQENARTTGDRRV 374
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP- 534
+ + +++ V V + + NL++ AL T+ G +V +V+A G V++DD GP
Sbjct: 375 VGRIDRNISVRVGADMIETVMQNLLDNALSFTKPGTEV-MVTATVTDGRVRVLVDDQGPG 433
Query: 535 ----DMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVR 583
D+ + E S+ M NF GL + R +E+ G ++R
Sbjct: 434 VPPGDLERIFERYVSIRDE--SQRMPGAG---NFGIGLWIVRRNIEAAGGLIR 481
>gi|150388384|ref|YP_001318433.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
gi|149948246|gb|ABR46774.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
Length = 463
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALM 505
+ P N+ +++ +F ++ H+Q++++ + + L +++ V++ RQ L NL++ A+
Sbjct: 316 VSPNNIGNLVDGVFLQMK--FHLQEKKIRVEKRLDTTIIAEVDQERFRQVLINLLDNAIR 373
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
GK+E+ + + ++ I D GP + P+ E F + +
Sbjct: 374 HMPENGKIEVCLEKSLDKNFILEIHDSGPGIK---EEHLPYIFERFYKADPSRKKSGGAG 430
Query: 566 AGLTVARELLESYGCVVRV 584
GLT+++ ++E++G + +
Sbjct: 431 LGLTISKHIVEAHGGEINI 449
>gi|126732904|ref|ZP_01748694.1| probable two-component sensor kinase transcription regulator
protein [Sagittula stellata E-37]
gi|126706610|gb|EBA05685.1| probable two-component sensor kinase transcription regulator
protein [Sagittula stellata E-37]
Length = 523
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
LRQ L L+ A+ + GGKV IV+ AGD VI D+GP + S +F
Sbjct: 415 LRQVLVGLVRNAIRHARDGGKVRIVA----AGDTAAVI-DNGPGIPAEAQ------SRIF 463
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 606
+ F GL +A+ ++E+ G + V SP LG GT+V + LP
Sbjct: 464 DRFAQGRKDSAGFGLGLALAKWVIEAQGGEIAVTSPVPDGERLGRAPGTKVSVRLP 519
>gi|350269162|ref|YP_004880470.1| putative two-component histidine kinase [Oscillibacter
valericigenes Sjm18-20]
gi|348594004|dbj|BAK97964.1| putative two-component histidine kinase [Oscillibacter
valericigenes Sjm18-20]
Length = 559
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 28/127 (22%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD----DGPDMH 537
L V +E ++Q L NL+ L GG++E+ + + PAG L V DD DG +
Sbjct: 443 GLAVYADEAEMKQVLVNLVSNGLKAVGQGGRIELRAESGPAGVLLSVTDDGTGMDGEKLR 502
Query: 538 YMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV-ISPWKTDAALGS 596
+ +T G+ + GL + LLE G +++ SP
Sbjct: 503 SVEKGITSGGTGRY---------------GLAIVSRLLEQNGGEMKIRSSP--------G 539
Query: 597 GGTRVEL 603
GGTR+E+
Sbjct: 540 GGTRIEM 546
>gi|365128008|ref|ZP_09340356.1| hypothetical protein HMPREF1032_02120 [Subdoligranulum sp.
4_3_54A2FAA]
gi|363623587|gb|EHL74698.1| hypothetical protein HMPREF1032_02120 [Subdoligranulum sp.
4_3_54A2FAA]
Length = 411
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S ++ D+ E A + + + LS + ++++ + + +A+ N+++ AL T+
Sbjct: 262 PENLSVLMQDVLERFETWAEGEHKTITLSG-KEDVVLSCDALWVSEAIGNIVKNALEHTE 320
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG +E+ + +P + I DDG +H + + F FS ++ +
Sbjct: 321 NGGHIEVKWSQSPLMTQ-IEISDDGKGIHPEDLYNIFKRFYRSRFSSDVHGIGL------ 373
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
GL +A+ ++E++G + V S +LG+G T
Sbjct: 374 GLPLAKSIVEAHGGTISVTS------SLGAGTT 400
>gi|289524121|ref|ZP_06440975.1| putative sensor histidine kinase [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289502777|gb|EFD23941.1| putative sensor histidine kinase [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 459
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 403 NNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462
+N S N L+ + + L ++ KD+ + +L L ++P +++++L L E
Sbjct: 262 DNLSPSIRDNLLRLNNQVLRMERLVKDL---LDMSSLETLSGLDLKPVHLTELLSALIED 318
Query: 463 VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA 522
+ L+ + +E++ LS++L V +E LR+A SNL++ A+ + GG++ I + A
Sbjct: 319 YQLLSDARSIMMEVN-LSENLWVKGDEEKLRRAFSNLLDNAIKYNEDGGQIVIRAKREVA 377
Query: 523 GDA--LVVIDDDGP 534
A +V+I++ GP
Sbjct: 378 ETAVIVVIIENTGP 391
>gi|380512771|ref|ZP_09856178.1| sensory histidine kinase CreC [Xanthomonas sacchari NCPPB 4393]
Length = 480
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
LALA ++Q+G P ++ + DL EA+ P + Q+++ L +L+V+ + L
Sbjct: 315 LALAEVEQHGWLQRREPVALAPLCADLVEALAPQLQARGLQLQVQALDPTLVVSGDPYLL 374
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
RQAL NL++ A+ + G + + + L+V++D GP +
Sbjct: 375 RQALHNLLDNAIAFSPEGASIVLRAERGTDARVLLVVEDAGPGV 418
>gi|22297739|ref|NP_680986.1| two-component sensor histidine kinase [Thermosynechococcus
elongatus BP-1]
gi|22293916|dbj|BAC07748.1| two-component sensor histidine kinase [Thermosynechococcus
elongatus BP-1]
Length = 385
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 117/314 (37%), Gaps = 73/314 (23%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQ----NNARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
+ ++LA+A V+DQ+ L S Q R +L+ Q+R P+++I+T K+L ++
Sbjct: 123 QVAQTLAIACVLDQRQQWLSHSPAQPLDQRQQRFDDLLHQLRNPVAAIRTFVKLLLKRLE 182
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ E I + +RL L++ +
Sbjct: 183 PDHKGRPLAEGIAKETERLMALLEDYR--------------------------------- 209
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458
Q N+ L + KPL L ++ L
Sbjct: 210 -QQRNDIPALTGSQPLPLAGKPLDL-----------------------------AETLLP 239
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI-VS 517
L A + A M+ + + Q + +EE L++ + NL++ A T GG + + +
Sbjct: 240 LISAAQARAEMEGKTFVVEIPPQLPPIWLEERVLQEVVGNLLDNAFKYTPKGGTIGLRLM 299
Query: 518 AAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLES 577
++PA + + + D G + P E + D+ GL +A++LL
Sbjct: 300 LSSPALE--LTVWDTGCGIP---KEAQPRLFERGYRGVQADSGIEGSGLGLAIAQDLLRP 354
Query: 578 YGCVVRVISPWKTD 591
YG +RV SP+ D
Sbjct: 355 YGLSLRVTSPYAGD 368
>gi|392966617|ref|ZP_10332036.1| PAS/PAC sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
gi|387845681|emb|CCH54082.1| PAS/PAC sensor hybrid histidine kinase [Fibrisoma limi BUZ 3]
Length = 951
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++ ++ E +PL QQRQ+ L+ SL++ +E L+Q L NL+ L T
Sbjct: 650 QPIDLVTLVRQTVEVAQPLYEQQQRQLSLALPPYSLVMQGDETRLKQVLMNLLTNGLKYT 709
Query: 508 QVGGKV----EIVSAAAPAGDALVVIDDDG 533
Q G V E+ +A + AL+ + DDG
Sbjct: 710 QPAGHVWVSLELADNSALSKQALLRMKDDG 739
>gi|421890533|ref|ZP_16321391.1| Sensor protein, histidine kinase [Ralstonia solanacearum K60-1]
gi|378964143|emb|CCF98139.1| Sensor protein, histidine kinase [Ralstonia solanacearum K60-1]
Length = 503
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PARVRESLAAIIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG+L +V PLA +Q+ + + S L
Sbjct: 307 ----------LALARARHTGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLD 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
L V+ LR+ALSNL+ A+ T G++ V A A G ALV +DD GP M
Sbjct: 357 TQLPVSGYPAFLREALSNLVHNAIRYTPPSGRI-TVRAIADCGAALVCVDDTGPGM 411
>gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 681
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+SD+ + F ++ LA+ + ++ L+ ++ ++ L+Q L NLI ++ T+ GG
Sbjct: 522 ISDIAMESFSVLKSLAYRKNIEINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGG 581
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFVA---G 567
K++I A L +I+D+G + +F+E V+++ + G
Sbjct: 582 KIQINITKNLAYMKL-IIEDNGIGIK------KEDQKRIFNEFEQVDNSYERKYEGTGLG 634
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 615
L + ++L+E +G + +IS T GT++ + +P + ++ N
Sbjct: 635 LPLTKKLVEMHGGEIFLISNIGT-------GTKIIITIPFQSEDNNYN 675
>gi|407701250|ref|YP_006826037.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Black Sea 11']
gi|407250397|gb|AFT79582.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Black Sea 11']
Length = 945
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P N+ ++LG E ++PL +Q + + +++ + V + L Q SN+I A T
Sbjct: 645 KPVNLCEILGTAIETIQPLIDEKQHTLSIEKVAIPVWVNGDLIRLSQIFSNIINNAAKYT 704
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMMHSLTPFGSELFS--ENMVEDNMT 561
GG +E V + G + + D+G PD + ++FS E +E +
Sbjct: 705 PPGGNIE-VRISTFDGKVTITVKDNGEGIPPDKLETVF-------DMFSQVEGALERSQG 756
Query: 562 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPS 607
GLT+ + L E + V V S G G GT+ E+ LP+
Sbjct: 757 -GLGIGLTLVKRLTELHDGTVNVFSD-------GVGKGTKFEVILPT 795
>gi|227506136|ref|ZP_03936185.1| two-component system sensor kinase TcsS4 [Corynebacterium striatum
ATCC 6940]
gi|227197243|gb|EEI77291.1| two-component system sensor kinase TcsS4 [Corynebacterium striatum
ATCC 6940]
Length = 375
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 20/146 (13%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 ----PD-MHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPW 588
PD + Y+ + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPDQLRYIF-------ERFYRGDAARSRDAAGAGIGLTISKALIEAHGGTLTATSP- 351
Query: 589 KTDAALGSG-GTRVELWLPSPAPLSD 613
G G G L LP P P S+
Sbjct: 352 ------GPGRGAVFTLRLPLPPPDSE 371
>gi|390948491|ref|YP_006412250.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
gi|390425060|gb|AFL72125.1| signal transduction histidine kinase [Thiocystis violascens DSM
198]
Length = 387
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 17/166 (10%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R ++ ++L D+ E R A R + S + ++ EP L +A N++ A+ T
Sbjct: 232 RSLDLVELLADIAEDARFEARSNGRDLHFSGSGERFVLGRAEP-LHRAFENVLRNAVKYT 290
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFV 565
G VE+ A +G V + D GP + + PF + T F
Sbjct: 291 CPGSTVEVALDGADSGHVCVSVRDHGPGVLPRELETIFQPF------HRGHRNAATEGFG 344
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAP 610
GL +AR ++S+ + P GG RVE+ LP P P
Sbjct: 345 LGLAIARRAIQSHQGTILASLP-------EDGGLRVEIRLPLQPQP 383
>gi|187930280|ref|YP_001900767.1| integral membrane sensor signal transduction histidine kinase
[Ralstonia pickettii 12J]
gi|187727170|gb|ACD28335.1| integral membrane sensor signal transduction histidine kinase
[Ralstonia pickettii 12J]
Length = 509
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R LS +R S N+L L+
Sbjct: 269 AVLLTQA------EYALRETD------PVRVRESLSAIIARLQSTNRLTTQLLALARARH 316
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A + P L L + DV+ D PLA +++Q +L L++A
Sbjct: 317 AGQ-DAPAETFDLGVLAR---------DVVVDAL----PLA--REKQQDLGWDDGGLVMA 360
Query: 487 ---VEEPA-LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
+ PA LR+ALSNL+ A+ T GG++ V A A ALV +DD GP M+
Sbjct: 361 LPVIGYPAFLREALSNLVHNAIRYTPAGGRI-TVRATADGDAALVCVDDTGPGMN 414
>gi|445495722|ref|ZP_21462766.1| two-component system sensor histidine kinase [Janthinobacterium sp.
HH01]
gi|444791883|gb|ELX13430.1| two-component system sensor histidine kinase [Janthinobacterium sp.
HH01]
Length = 462
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 90/232 (38%), Gaps = 39/232 (16%)
Query: 398 RSQLSN----NFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453
RSQL+ +FS K +N ++ + ++MP P L RP V
Sbjct: 255 RSQLAERDGEDFSTAIVAVKRRNVSLGEFIERFTRVVKMPAPEL----------RPNAVR 304
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG--- 510
D++ D+ R + ++ +A++ + QAL N+++ A+ + G
Sbjct: 305 DIMDDILYLYREPCRSRGIRLAWQRCDDVPAIAMDRHLMEQALLNVVKNAMEAVEAGHAD 364
Query: 511 ----GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSL-TPFGSELFSENMVEDNMTWNFV 565
+E V A G L VID L TPF F+ +
Sbjct: 365 GAGEKAIEFVLEAEADGVRLSVIDSGNLLGEVPARQLFTPF----FTTKKGGQGI----- 415
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGK 617
GL RE+L +G R+ AA G G TR ++WLP+ SD+ +
Sbjct: 416 -GLLFVREVLNRHGYTYRL-------AATGQGTTRFDIWLPNSGVKSDIRTR 459
>gi|392426651|ref|YP_006467645.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
gi|391356614|gb|AFM42313.1| signal transduction histidine kinase [Desulfosporosinus acidiphilus
SJ4]
Length = 591
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
L+LA + + N++D++ +L+ ++ A ++V L+ L+++ + ++ ++Q +
Sbjct: 436 LSLAKVNVEHAKYQNINDIVYNLYPLMQADAFNNNKEVRLN-LNETENILLDTNEIKQLI 494
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
N++ L T GG V I + PA L VI DDGP +
Sbjct: 495 LNIVRNGLEATHTGGSVTISTLQEPAKVVL-VIRDDGPGI 533
>gi|430808189|ref|ZP_19435304.1| sensory histidine kinase [Cupriavidus sp. HMR-1]
gi|429499475|gb|EKZ97898.1| sensory histidine kinase [Cupriavidus sp. HMR-1]
Length = 462
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
G LFE LA + +QV L L +V + LR+ALSNL+ AL T G V +V
Sbjct: 320 GALFEFYEALA--EDKQVAL-RLQGDGIVEGDRLMLRRALSNLLSNALRHTPQAGAV-VV 375
Query: 517 SAAAPAGDALVVIDDDGPDM 536
A A G +V +++DGP++
Sbjct: 376 EAHAEGGSVVVAVENDGPEI 395
>gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
[Rhodospirillum centenum SW]
gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
[Rhodospirillum centenum SW]
Length = 894
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 472 RQVELSELSQSLLVAVEEP-----------ALRQALSNLIEGALMRTQVGGKVEIVSAAA 520
R VE ++S+ V EEP A+RQ L NL+ A+ T GG+V +V
Sbjct: 750 RMVEDQARARSIAVVWEEPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVVLGGH 809
Query: 521 PAGDALVVIDDDGPDMHY--MMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 578
D + I D G + M H PF F V T GL++ R L+E++
Sbjct: 810 DGEDLWLEISDTGIGIAEADMEHVFEPF----FRAGNVYTRSTEGTGLGLSIVRALMEAH 865
Query: 579 GCVVRVISPWKTDAALGSGGTRVELWLPS 607
G V + S + GT + + LPS
Sbjct: 866 GGRVSLRSRYGQ-------GTTLRITLPS 887
>gi|456735195|gb|EMF59956.1| Sensory histidine kinase BaeS [Stenotrophomonas maltophilia EPM1]
Length = 467
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 61/133 (45%), Gaps = 22/133 (16%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS 542
L V+ +E L+Q L+NL+E AL T+ GG+V + +A PAG LVV +D P
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTRAGGRVRVQAARVPAGVQLVV-EDTAP-------G 402
Query: 543 LTPFGSELFSENMVEDNMTWNFVA-----GLTVARE-LLESYGCVVRVISPWKTDAALGS 596
+ P L E + N + GL ++ +L +G + SP
Sbjct: 403 VPPDKCALLFERFYRVESSRNRASGGSGLGLAISHNIILAHHGVIHAAPSPL-------- 454
Query: 597 GGTRVELWLPSPA 609
GG RV + LP PA
Sbjct: 455 GGLRVVITLPEPA 467
>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
Length = 1311
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV 487
+ IEM LAL N+ D+L ++E+ P++ + + + ++ L+
Sbjct: 867 RRIEMKGETLALETF--------NLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLITA 918
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD---ALVVIDDDGPDM--HYMMHS 542
+ P + + ++NL+ A T GG V + + P+ A++ ++DDG + H
Sbjct: 919 DSPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDGIGIPAEEQEHI 978
Query: 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
F + N +DN GL VA+E ++ + + V S
Sbjct: 979 FERF----YQANSHKDNTGSGI--GLNVAKEYVQLHNGKIEVSS 1016
>gi|312143606|ref|YP_003995052.1| integral membrane sensor signal transduction histidine kinase
[Halanaerobium hydrogeniformans]
gi|311904257|gb|ADQ14698.1| integral membrane sensor signal transduction histidine kinase
[Halanaerobium hydrogeniformans]
Length = 455
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 36/187 (19%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS---------- 477
+D ++ + L LK+ R ++ + L + EA + ++Q+ Q+E++
Sbjct: 264 EDGKISLNQENLDELKEEIARMVSLIEKLKEFAEAQNKIFNLQKEQIEINKLIKNVSKKK 323
Query: 478 -------------ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
EL + L++ ++ +L Q L+NLIE A+ + GK+ I S +
Sbjct: 324 LKQIESKNIKLNLELEKELIIEADKDSLIQILNNLIENAVKYNRDNGKITIKSCQRD-NN 382
Query: 525 ALVVIDDDG-----PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
++ I D G D+ Y+ SEN GL V +EL+E++G
Sbjct: 383 IIIQISDTGYGISREDLPYIFERFYRADKSRSSEN-------GGTGIGLAVTKELIEAHG 435
Query: 580 CVVRVIS 586
+ V S
Sbjct: 436 AKIEVDS 442
>gi|239813727|ref|YP_002942637.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
gi|239800304|gb|ACS17371.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
Length = 641
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P + D + + EAVRPL + + + L +A + + Q +SNL+ A T
Sbjct: 348 KPVRLRDAIAEAIEAVRPLIDGKSQTLHLQTQDADPWIAGDSARVVQIVSNLVHNAAKFT 407
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG + VS + A DA + + DDGP +
Sbjct: 408 GNGGNIH-VSLSRTAADADISVRDDGPGI 435
>gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1242
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 10/153 (6%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP ++ V+ + E ++P A + + V+ + L+Q NL+ A+ T
Sbjct: 943 RPVSLISVITEAIETLKPQAEAKDITINCMLDRYVSSVSGDASRLQQVAWNLLSNAIKFT 1002
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA- 566
GG+VE+ S A DAL+ + D G + + P+ E F + T+ +
Sbjct: 1003 PSGGQVEV-SLQAVGTDALLQVKDTG---NGIKADFLPYIFERFRQADASTTRTYGGLGL 1058
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
GL + R L+E +G V SP LG G T
Sbjct: 1059 GLAIVRHLVEMHGGTVEADSP-----GLGLGAT 1086
>gi|190576269|ref|YP_001974114.1| two-component system sensor histidine kinase [Stenotrophomonas
maltophilia K279a]
gi|190014191|emb|CAQ47835.1| putative two-component system sensor histidine kinase
[Stenotrophomonas maltophilia K279a]
Length = 467
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS 542
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV +D P
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVV-EDTAP-------G 402
Query: 543 LTPFGSELFSENMVEDNMTWNFVA-----GLTVARE-LLESYGCVVRVISPWKTDAALGS 596
+ P L E + N + GL ++ +L +G + SP
Sbjct: 403 VPPDKCALLFERFYRVESSRNRASGGSGLGLAISHNIILAHHGVIHAAPSPL-------- 454
Query: 597 GGTRVELWLPSPA 609
GG RV + LP PA
Sbjct: 455 GGLRVVITLPEPA 467
>gi|443320921|ref|ZP_21049993.1| signal transduction histidine kinase [Gloeocapsa sp. PCC 73106]
gi|442789344|gb|ELR99005.1| signal transduction histidine kinase [Gloeocapsa sp. PCC 73106]
Length = 407
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 132/338 (39%), Gaps = 83/338 (24%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQNN------------ARMSNLVEQIRGPLSSIQTLS 330
I +++A+A ++DQ+ QS ++ N ++++ + Q+R PL++++T
Sbjct: 135 QIAQTIAIACLLDQR-----QSWYEQNLVDMQEIRIVEQTKLADFLHQLRNPLTALRTFG 189
Query: 331 KMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSA 390
K+L + + + IV ++ + + L ++ +K+
Sbjct: 190 KLLLKRLIPGDENQKIVTGLLREAEHL----------------------QDLIKQFETGT 227
Query: 391 YSHPE-SIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRP 449
P+ SQ+ ++F +P L L P
Sbjct: 228 RESPQLDSASQVKSSFL---------------------------LPALTL--------EP 252
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL-VAVEEPALRQALSNLIEGALMRTQ 508
N+S V+ + + + L + Q+ L ELS L V AL + L NL++ AL T
Sbjct: 253 VNLSAVVEPILLSAQTLGEAKNIQL-LVELSAVLSPVQGNAQALAEVLQNLVDNALKYTP 311
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
GGK++I + P G + I D G + + H + E + + GL
Sbjct: 312 SGGKIKITTLTKP-GFLGLAIHDTG---YGIPHEVQERIFERHYRGVQANGDIPGTGLGL 367
Query: 569 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
+A++L+E + +ISP GT +WLP
Sbjct: 368 AIAKDLIEQMHGSIELISP--NHCEFEDKGTTFIVWLP 403
>gi|311109657|ref|YP_003982510.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans A8]
gi|310764346|gb|ADP19795.1| His Kinase A phosphoacceptor domain protein 14 [Achromobacter
xylosoxidans A8]
Length = 495
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G P ++ D+ + + P A +Q + L + + V E LR+A+S
Sbjct: 322 ASLAEGGFTPEPVDLVDLADGVIRGLLPTARARQLDIGLEADIRPVTVLGAEWLLREAVS 381
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G+V V AG A +V++D+GP M
Sbjct: 382 NLVDNAIRYTSSAGEV-TVKVQVEAGQARLVVEDNGPGM 419
>gi|440784699|ref|ZP_20961830.1| two-component system signal transduction histidine kinase
[Clostridium pasteurianum DSM 525]
gi|440218676|gb|ELP57894.1| two-component system signal transduction histidine kinase
[Clostridium pasteurianum DSM 525]
Length = 470
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N+S + ++ + +P+ M++ + +E++++++V +++ L+Q L NL+ A ++
Sbjct: 321 NLSSEIANIVDTFKPI-FMRKNCMITAEVAENIIVYMDKDNLKQILHNLLSNANNYLEIN 379
Query: 511 GKVEIVSAAAPAGDALVVIDDDG-----PDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
G+V+ VS ++ ++D+G D+ Y+ + ++ D T
Sbjct: 380 GRVK-VSLFEKKDHIIIEVEDNGIGISEKDLPYIFE-------RFYRSDISRDKNTGGSG 431
Query: 566 AGLTVARELLESYGCVVRV 584
GLT+ + L+E+ G +RV
Sbjct: 432 LGLTITKSLVEANGGKIRV 450
>gi|429767625|ref|ZP_19299815.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
gi|429189945|gb|EKY30758.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
Length = 536
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
A L ++ R +++D+LGD+ + V L+ + + V + L Q NL
Sbjct: 365 AELSRDRPRAIDLNDLLGDIIGVYEAGRKPDEPAVRLTTATDNARVMGRDVPLGQVFRNL 424
Query: 500 IEGALMRTQVGGKVEIV---SAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMV 556
I+ A + GG+V + + P + IDDDGP + +L ++
Sbjct: 425 IDNARSFSPAGGEVRVSLSRDDSQPDLPLRIRIDDDGPGIPA--DNLETVFERFYTSRPK 482
Query: 557 EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
N GL++ R++++++G VR ++ D A+ G R E+ LP+
Sbjct: 483 GTAFGANSGLGLSIVRQIVDAHGGRVRAVNRKGEDGAV--LGARFEVSLPA 531
>gi|359783013|ref|ZP_09286231.1| sensory histidine protein kinase TctE [Pseudomonas psychrotolerans
L19]
gi|359369159|gb|EHK69732.1| sensory histidine protein kinase TctE [Pseudomonas psychrotolerans
L19]
Length = 467
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
+ + G +SD+ +L A+ PLAH + + +++ ++ E L + L NL+E
Sbjct: 317 IAEGGAERLELSDLARELAMALAPLAHAKGVALAFEPFAKAPVIG-EPTLLNELLCNLVE 375
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
AL +Q GG + +V AP A++ ++DDGP + +++F D +
Sbjct: 376 NALAHSQSGGNI-VVRVLAP---AVLEVEDDGPGIPANAR------AKVFERFQRLDPQS 425
Query: 562 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
GL + E+ ++ ++++ D AL GG RV + P+
Sbjct: 426 GGAGLGLAIVGEICAAHRARIQLL-----DGAL--GGLRVRVEFPA 464
>gi|452995614|emb|CCQ92720.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Clostridium ultunense Esp]
Length = 462
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 13/161 (8%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N+S+ L D+ +PL + +E S + + + + +++ +Q ++NL+ AL +
Sbjct: 313 NISEELKDILSQFKPLFKKENFLLE-SSIEEDIEIIMDKNRFKQIMNNLLSNALKFLKDR 371
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNM-TWNFVAGLT 569
GKV V+ + ++D+G + PF + F V N T GL+
Sbjct: 372 GKV-FVTLIREKDQVKITVEDNGIGIK---EEDLPFLFDRFYRADVSRNKDTGGTGLGLS 427
Query: 570 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
+A+ L+E++G + V S + GTR + LP+
Sbjct: 428 IAKTLVEAHGGSIYVESEF-------DKGTRFTILLPTDTK 461
>gi|374299340|ref|YP_005050979.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
gi|332552276|gb|EGJ49320.1| integral membrane sensor signal transduction histidine kinase
[Desulfovibrio africanus str. Walvis Bay]
Length = 485
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
+ P +V+ VL + AV + +QQ++VEL+ E + +L+ + + +A NL+ AL
Sbjct: 338 LEPVDVTQVLDQM--AVFLESKLQQQEVELAREYAPGVLIMADRDLIYRAFYNLVANALE 395
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
GK+ I S A AG +V I+D G + +L F+ +D+ T
Sbjct: 396 ALNGPGKIRI-SVNAAAGQVMVNIEDSGTG--FAPETLEKLRDPFFT---TKDSGTG--- 446
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLPS 607
GLT+ +L +G + LG+ GG RVE+ P+
Sbjct: 447 LGLTIVDTILGGHGAQMH----------LGNNPEGGARVEIIFPA 481
>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|357046222|ref|ZP_09107852.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella clara YIT 11840]
gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|355531228|gb|EHH00631.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella clara YIT 11840]
Length = 1299
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV 487
+ IEM LAL N+ D+L ++E+ P++ + + + ++ LV
Sbjct: 855 RRIEMKGETLALETF--------NLKDMLSRIYESFLPMSEEKNIRFDFHCHPETFLVTA 906
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD---ALVVIDDDG 533
+ P + + ++NL+ A T GG V + + P+ A++ ++DDG
Sbjct: 907 DSPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPEPSDGREMAVIQVEDDG 955
>gi|422322169|ref|ZP_16403211.1| sensor protein [Achromobacter xylosoxidans C54]
gi|317402961|gb|EFV83501.1| sensor protein [Achromobacter xylosoxidans C54]
Length = 447
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 33/124 (26%)
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP-----------DMHYMMHSLTPF 546
NL++ A+ T GG ++I APAG AL++IDD+GP D Y + T
Sbjct: 345 NLLDNAIKYTPPGGHIDI-RLEAPAGQALLLIDDNGPGIPPGERARVFDRFYRLEGNTQH 403
Query: 547 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GS L GL +AR + E +G + + DA GSG +
Sbjct: 404 GSGL----------------GLAIARAIAERHGATITL-----EDAPGGSGLRARVAFAR 442
Query: 607 SPAP 610
PAP
Sbjct: 443 GPAP 446
>gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
Length = 288
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 15/129 (11%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHS 542
V V+ ++Q L NL+ A T GG++ +V+ P G + + D G M + H+
Sbjct: 161 VPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQTPDGGVTIAVADTGIGMTKEQISHA 220
Query: 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRV 601
LTPFG S + GL +A L +G ++ S P K GT V
Sbjct: 221 LTPFGQVQASYARGHEGTGL----GLPIAAALTTLHGGEFQIFSEPGK--------GTTV 268
Query: 602 ELWLPSPAP 610
LP AP
Sbjct: 269 FFTLPPAAP 277
>gi|110597378|ref|ZP_01385665.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
gi|110340922|gb|EAT59393.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
ferrooxidans DSM 13031]
Length = 372
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 19/163 (11%)
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
++PC V D L + V A +Q ++L + +++V + LRQA N+I AL
Sbjct: 217 AMKPCRVQDELETIVTLVMNDARKRQVALQLQPNAVAMIVMADSEKLRQAFLNIIINALQ 276
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY--MMHSLTPFGSELFSENMVEDNMTWN 563
T GG+V I + A + D GP + M PF F+ +
Sbjct: 277 ATPEGGRVTISTTIAEHAFCEIRFRDSGPGVEKAAMERIFEPF----FTTKSDGTGL--- 329
Query: 564 FVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL + + ++E++ ++V +++AA GT V + LP
Sbjct: 330 ---GLAITKNIIENHKGTLKV----ESEAA---NGTTVTIRLP 362
>gi|387901313|ref|YP_006331652.1| GntR family transcriptional regulator [Burkholderia sp. KJ006]
gi|387576205|gb|AFJ84921.1| Transcriptional regulator, GntR family [Burkholderia sp. KJ006]
Length = 240
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 14/137 (10%)
Query: 432 MPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLLVA 486
MP+ P A+A + +N P V+D + D EA V P+ + Q +LSE +
Sbjct: 1 MPVRP-AIAQIMKNV--PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE-----LE 52
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSLTP 545
+ +LR+ALS L ++R + G V + SA A A A + PD + M ++L
Sbjct: 53 ISRASLREALSTLEALGMLRIRAGKGVYVESAQASAAHAWQFAEQSSPPDTYQMRYALEG 112
Query: 546 FGSELFSENMVEDNMTW 562
F + + + + +D++ W
Sbjct: 113 FAARMAAHVVTDDDIAW 129
>gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
Length = 531
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+ +++ D+F +R L + + +E++ L V + Q L+NL+ AL T G
Sbjct: 375 KIDELIEDIFLRMRHLFNNKGITLEVARNKNQLPVWADRGKTGQVLTNLLSNALKFTTTG 434
Query: 511 GKVEIVSAAAPAG-DALVVIDDD--GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA- 566
GKV + S + +G D ++ + D G D+ PF V+ T N+
Sbjct: 435 GKVVVESNSGDSGRDVIITVRDTGIGIDIRDQEKIFQPF-------YQVDGTSTRNYGGM 487
Query: 567 --GLTVARELLESYGCVVRVIS 586
GL +A++L+E +G +RV S
Sbjct: 488 GIGLNLAKKLVELHGGTIRVSS 509
>gi|416396164|ref|ZP_11686411.1| two-component sensor histidine kinase [Crocosphaera watsonii WH
0003]
gi|357263014|gb|EHJ12077.1| two-component sensor histidine kinase [Crocosphaera watsonii WH
0003]
Length = 429
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQ-------NNARMSNLVEQIRGPLSSIQTLSKMLSLH 336
I +LA+A ++DQ+ ++ + R+ +L Q+R PL++++ K+L
Sbjct: 145 IADTLAIACLLDQRGEWYERQLQRQQLKQQQERDRLDDLFHQVRNPLTALKVFGKLLLKR 204
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDA--VFLTKANIVRYNEETLKKMNNSAYSHP 394
+ E S IV++I+ +G+ L+ +++ + + + ++ N E++ +N ++S P
Sbjct: 205 LGGDEQSSSIVKNIVQEGEHLQDLIKDFESYQNSLINEEEVITLNTESVDISDNLSFSLP 264
Query: 395 ES 396
S
Sbjct: 265 AS 266
>gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 549
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ + E VR A + V L+ Q L+V + LRQ + NL+ A+ T
Sbjct: 396 PTPLALLITECLEIVRAKAESKNISVALAGPDQDLMVTTDSRRLRQIVLNLLSNAVKFTP 455
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG++ I+ A +G + ++D G M + +LTPFG ++
Sbjct: 456 EGGRI-ILEAECDSGQLALTVNDTGIGMTQEEIAVALTPFGQN--DSDLARREAGTGL-- 510
Query: 567 GLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPSPAPL 611
GL +++ L E G + V S P + GT V + LP PL
Sbjct: 511 GLPLSKRLTELLGGTLSVTSIPGR--------GTTVTISLPLSRPL 548
>gi|148655456|ref|YP_001275661.1| response regulator receiver sensor signal transduction histidine
kinase [Roseiflexus sp. RS-1]
gi|148567566|gb|ABQ89711.1| response regulator receiver sensor signal transduction histidine
kinase [Roseiflexus sp. RS-1]
Length = 391
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 437 LALAPLKQNGIR--PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALR 493
L L ++ N IR P + DV+ ++ ++PLAH +EL+ Q V + +P +
Sbjct: 229 LYLQEVRSNEIRRVPVVIHDVVREIIAEMQPLAHAA--HLELTSSIQPTAVYMGDPIGIG 286
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS--LTPFGSELF 551
QAL LI+ A+ T G++ + P+ LV ++D G + H PF
Sbjct: 287 QALRALIDNAVKFTPAPGRISVTVIDEPS-RVLVRVEDTGIGIPAEAHEKIFLPF----- 340
Query: 552 SENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAAL 594
++D + + GL +AR ++E++G + V S +A
Sbjct: 341 --YQIDDTLARPYAGVGLGLAIARHVIEAHGGQISVRSAVNAGSAF 384
>gi|434388986|ref|YP_007099597.1| histidine kinase [Chamaesiphon minutus PCC 6605]
gi|428019976|gb|AFY96070.1| histidine kinase [Chamaesiphon minutus PCC 6605]
Length = 467
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 115/296 (38%), Gaps = 59/296 (19%)
Query: 322 PLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
PL++I+T K+L ++ E I+ + DRL+ L L++A+ L +
Sbjct: 213 PLTAIRTFGKLLIKRLQLGETDGGFANSIVRESDRLQELLIHLENAIDLPLIKDEDSKSD 272
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
+K + +S Q N S N + +P A
Sbjct: 273 WIKPLPSS----------QQEANVSNAN----------------------LLLPDAAFR- 299
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
+ C ++DVL L + +A Q R + + + + L LV ALR+ LSNL
Sbjct: 300 -----VESCQLTDVLDPLITSAEAIA--QDRNLTFYTHIPRDLPLVQAHPAALREVLSNL 352
Query: 500 IEGALMRTQVGGK----VEIVSAAAPAGDA------LVVIDDDGPDMHYMMHSLTPFGSE 549
I+ AL T GG+ VE+V+ A DA + I D G + L +
Sbjct: 353 IDNALKYTPTGGEVDVDVELVATAIDLADAPQPARIQICIRDTG--VGIPAQDLDKLFTR 410
Query: 550 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
+ + ++ + GL +A+EL+ + V SP G GT LWL
Sbjct: 411 HYRGVQAQGSIAGTGL-GLAIAKELVTHMNGKLEVASP----PPGGDRGTEFMLWL 461
>gi|444911806|ref|ZP_21231978.1| Multi-sensor Hybrid Histidine Kinase [Cystobacter fuscus DSM 2262]
gi|444717682|gb|ELW58506.1| Multi-sensor Hybrid Histidine Kinase [Cystobacter fuscus DSM 2262]
Length = 2031
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
V +++ D E+ P A + Q++ E+ LL+ ++ + QAL NL+ A+ T G
Sbjct: 868 RVEEIVRDARESFEPHAAEKGLQLDF-EVEPGLLLWCDKERILQALGNLLSNAIKFTPPG 926
Query: 511 GKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE-DNMTWNFVAGL 568
G++ + A A GD + + D GP + S +F E N GL
Sbjct: 927 GRILLRAEAEAGTGDIRLSVTDTGPGVPLAAQ------SHIFDRYWHEAQNKREGHGLGL 980
Query: 569 TVARELLESYGCVVRV 584
++A+ ++ES+G +R+
Sbjct: 981 SIAKGIVESHGGRIRL 996
>gi|358461192|ref|ZP_09171361.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. CN3]
gi|357073856|gb|EHI83353.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. CN3]
Length = 592
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 9/145 (6%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
GI VSD+ + EA+ L H +L + L V + AL Q ++NL++ AL
Sbjct: 329 TGIDDNTVSDLPEVVREALGSLRHASMAGAVAVDLPEHLPVRMSRQALHQVVANLVDNAL 388
Query: 505 MRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDMHY-MMHSL-TPFGSELFSENMVEDNMT 561
+ + G V ++ A GD +V+ + + GPD+ +H L PF S D
Sbjct: 389 VHSWPGTPVRLI--AGRVGDEVVLRVRNQGPDLDKETIHRLFEPFTQRDGSATRPTDGAG 446
Query: 562 WNFVAGLTVARELLESYGCVVRVIS 586
GL V R L+E +G +R+ +
Sbjct: 447 ----MGLYVVRRLVEVHGGRLRMTA 467
>gi|336122009|ref|YP_004576784.1| integral membrane sensor signal transduction histidine kinase
[Methanothermococcus okinawensis IH1]
gi|334856530|gb|AEH07006.1| integral membrane sensor signal transduction histidine kinase
[Methanothermococcus okinawensis IH1]
Length = 650
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
N+ +++ ++ + ++PLA ++ + + +++ ++ + Q L+NLIE A+ + V
Sbjct: 504 INLKELVENVVDTLKPLA--DEKNINIIYKINDIIMKGDKDRITQVLTNLIENAIKFSPV 561
Query: 510 GGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
GKVEI A G+++ + I D+GP + L + + E + GL
Sbjct: 562 NGKVEI--QALKEGNSVHIKIIDNGPGIP--KKDLDRIFDRFYQVDSPEKRIKGGSGLGL 617
Query: 569 TVARELLESYGCVVRVISPWKTDAALGSG 597
V + ++E++G + W ++ LGSG
Sbjct: 618 AVCKSIIETHGGTI-----W-VESKLGSG 640
>gi|399074351|ref|ZP_10750963.1| signal transduction histidine kinase [Caulobacter sp. AP07]
gi|398040531|gb|EJL33635.1| signal transduction histidine kinase [Caulobacter sp. AP07]
Length = 448
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 484 LVAVEEP-ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMH- 541
L A+ P A ++AL+NLI+ A G V + S A P+G + +DDDGP + +H
Sbjct: 336 LSAILRPQAFKRALANLIDNAAAH---GETVRVSSMARPSGGVWIFVDDDGPGIPDALHE 392
Query: 542 -SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
+ PF S N E + GL +AR++ G
Sbjct: 393 EAFRPFNRLDESRNQNEKGVG----LGLAIARDMARGLG 427
>gi|409406143|ref|ZP_11254605.1| sensor kinase of copper sensing two-component system
[Herbaspirillum sp. GW103]
gi|386434692|gb|EIJ47517.1| sensor kinase of copper sensing two-component system
[Herbaspirillum sp. GW103]
Length = 459
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 444 QNGI-----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
+NGI P + + + +LF+ LA + Q++L+ + + +R+ALSN
Sbjct: 301 ENGISLPSYEPLQLQEEITELFDFYDALAEEKGLQLQLA---GDATIRGDRLMVRRALSN 357
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LI A+ T G + VS A GD LV +++DGP++
Sbjct: 358 LISNAMRYTPAAGSI-TVSIARSEGDVLVAVENDGPEI 394
>gi|194289105|ref|YP_002005012.1| sensor histidine kinase in two-component regulatory system wtih
kdpe, regulation of potassium translocation [Cupriavidus
taiwanensis LMG 19424]
gi|193222940|emb|CAQ68945.1| sensor histidine kinase in two-component regulatory system wtih
KdpE, regulation of potassium translocation [Cupriavidus
taiwanensis LMG 19424]
Length = 952
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V +++G A+R ++ +V +++LSQ L+ + + + L NL+E A T G
Sbjct: 790 SVEELVGSSLAAMRE--ALEHHRVIVADLSQVPLIECDAVLVERVLCNLLENASKYTPAG 847
Query: 511 GKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSE--LFSE--NMVEDNMTWNFV 565
++ I S AP D + +V++DDGP + P G E +F + ++ T
Sbjct: 848 TEIRISS--APVEDEIRIVVEDDGPGV--------PKGKERQIFEKFTRGERESATAGVG 897
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
GL V +++++G + V + + D G G R + LP P
Sbjct: 898 LGLAVCEAIVQAHGGRIWVEAAQRPDRPDGQAGARFVVALPRGNP 942
>gi|392382608|ref|YP_005031805.1| two-component sensor histidine kinase [Azospirillum brasilense
Sp245]
gi|356877573|emb|CCC98415.1| two-component sensor histidine kinase [Azospirillum brasilense
Sp245]
Length = 587
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P V+ +LG+ E V LA + +++ S + L V + LRQA+ NL+ A+ T
Sbjct: 419 PVRVAVLLGECVELVEALAGQKGVRMDCSPIEPGLTVMADAMRLRQAVLNLLSNAIKFTP 478
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHY--MMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG+V + +A G + + D G M + +L PF V MT
Sbjct: 479 AGGRVRVDAARGGDGCVSLTVADTGIGMSSEDIKIALEPF-------RQVNSYMTKAHSG 531
Query: 567 ---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAP 610
GL +A+ +E++G + T +++ GT V + LP +P+P
Sbjct: 532 TGLGLPLAKRFVEAHGGRL-------TLSSVPGEGTVVNIVLPGTPSP 572
>gi|5764627|gb|AAD51347.1|AF173226_4 SmeS [Stenotrophomonas maltophilia]
Length = 467
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS 542
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV +D P
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVV-EDTAP-------G 402
Query: 543 LTPFGSELFSENMVEDNMTWNFVA-----GLTVARE-LLESYGCVVRVISPWKTDAALGS 596
+ P L E + N + GL ++ +L +G + SP
Sbjct: 403 VPPDKCALVFERFYRVESSRNRASGGSGLGLAISHNIILAHHGVIHAAPSPL-------- 454
Query: 597 GGTRVELWLPSPA 609
GG RV + LP PA
Sbjct: 455 GGLRVVITLPEPA 467
>gi|182412192|ref|YP_001817258.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839406|gb|ACB73658.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 695
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG----PDMHY 538
LLV +E +RQALSNL+ AL T GG V++ PAG V + D G P+ H
Sbjct: 441 LLVHADERLIRQALSNLLSNALKFTPAGGAVDLTVEPTPAGGVRVAVRDSGIGIAPEKHA 500
Query: 539 MMHSLTPF 546
+ PF
Sbjct: 501 RL--FRPF 506
>gi|38232698|ref|NP_938465.1| two-component system sensor protein [Corynebacterium diphtheriae
NCTC 13129]
gi|38198956|emb|CAE48571.1| Putative two-component system sensor protein [Corynebacterium
diphtheriae]
Length = 375
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T VGG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVVVDRQRFGQVMSNLLSNALRHTPVGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGSGIGLTISKALIEAHGGTLTATSP 351
>gi|344172647|emb|CCA85301.1| sensor protein, histidine kinase [Ralstonia syzygii R24]
Length = 503
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG L +V PLA +Q+ + + S L+
Sbjct: 307 ----------LALARARHAGQDAPPETFDLGALARSVVVDALPLAREKQQDLGWDDSGLA 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+L V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M
Sbjct: 357 TTLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGM 411
>gi|328545819|ref|YP_004305928.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain-containing protein [Polymorphum gilvum
SL003B-26A1]
gi|326415559|gb|ADZ72622.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Polymorphum gilvum SL003B-26A1]
Length = 607
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
S L ++ + + L Q +SNLI+ A + GG V V A LV +DDDGP +
Sbjct: 473 SRLDKAYEILGHDSRLGQVISNLIDNARSFSPPGGTVR-VGAERRGSQILVTVDDDGPGI 531
Query: 537 HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS 596
++ +++ + N GL+++R+++E++ +R + + D G
Sbjct: 532 R--AETIERIFERFYTDRPEGEGFGNNSGLGLSISRQIIEAHRGTIRAENRMEADPETGR 589
Query: 597 ---GGTRVELWLPSPAP 610
G R + LP+ P
Sbjct: 590 ARIAGARFVVALPAGRP 606
>gi|338532908|ref|YP_004666242.1| sensor histidine kinase [Myxococcus fulvus HW-1]
gi|337259004|gb|AEI65164.1| sensor histidine kinase [Myxococcus fulvus HW-1]
Length = 464
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 466 LAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525
LA + R VE + ++L V L QALSNL+ A+ + GG V V G
Sbjct: 324 LARLLGRTVECARPDEALWVRCNPTMLEQALSNLLHNAVTHGEAGGHVVAVLEDVEPGRF 383
Query: 526 LVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
+ + DDGP + L G F T GL++ REL G
Sbjct: 384 RLTVLDDGPGLPP--GDLERLGERGFRAQATRRRATRGSGLGLSIVRELCHRVG 435
>gi|197119034|ref|YP_002139461.1| HAMP domain-containing sensor histidine kinase [Geobacter
bemidjiensis Bem]
gi|197088394|gb|ACH39665.1| sensor histidine kinase, Cache_1 and HAMP domain-containing
[Geobacter bemidjiensis Bem]
Length = 829
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
R C+++ ++ D +R Q+ Q+ L+E + + ++ ++QA+ N+I+ A
Sbjct: 686 FRECDLNRLVCDTVLLMRRQCERQKVQLNLTE-GEVPPLRLDPEKIKQAVLNIIKNAQEA 744
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG++E+V++ G A++ I DDGP + H L F+ +
Sbjct: 745 LPEGGRIEVVTSVQD-GYAVIGIGDDGPGI--ASHDLPLIFEPFFTRKGAGTGL------ 795
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL++ + ++E + VRV + A G GGTR + LP
Sbjct: 796 GLSITQRIVEEHHGKVRV------ETAPG-GGTRFTIELP 828
>gi|406896317|gb|EKD40641.1| hypothetical protein ACD_74C00278G0003 [uncultured bacterium]
Length = 468
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P +++ ++ ++ + ++ LA ++ Q + + ++ + V+ LRQA+ NL++ A+ T
Sbjct: 300 QPTDLNALVAEVIDCLQVLAE-EKEQTLIQDDTEPVFAKVDYAILRQAVINLVDNAIKYT 358
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
Q G + +V A DA++ I D+GP +
Sbjct: 359 QPRGGIRVVVRPKAARDAVIEIIDNGPGI 387
>gi|344169049|emb|CCA81372.1| sensor protein, histidine kinase [blood disease bacterium R229]
Length = 503
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG L +V PLA +Q+ + + S L+
Sbjct: 307 ----------LALARARHAGQDAPPETFDLGALARSVVVDALPLAREKQQDLGWDDSGLA 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+L V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M
Sbjct: 357 TTLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGM 411
>gi|300690244|ref|YP_003751239.1| sensor protein, histidine kinase [Ralstonia solanacearum PSI07]
gi|299077304|emb|CBJ49930.1| Sensor protein, histidine kinase [Ralstonia solanacearum PSI07]
Length = 503
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 37/176 (21%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 267 AVLLTQA------EYALRETD------PVRVREGLAAMIARLQSTNRLTSQL-------- 306
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG L +V PLA +Q+ + + S L+
Sbjct: 307 ----------LALARARHAGQDAPPETFDLGALARSVVVDALPLAREKQQDLGWDDSGLA 356
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+L V+ LR+ALSNL+ A+ T GG++ V A A + ALV +DD GP M
Sbjct: 357 TTLPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAVADSDAALVCVDDTGPGM 411
>gi|298715823|emb|CBJ28288.1| Two component sensor histidine kinase [Ectocarpus siliculosus]
Length = 480
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 264 DHERMRVYKFSADQRLNAINICRSLAMAYVMDQK---SMLLQQSSWQNNARMSNLVEQIR 320
D E RV D+RL I RS+ +A V+DQK + ++Q + S + Q++
Sbjct: 139 DIENARVLWGERDKRLLE-TIARSVGVAAVLDQKQRWAAVMQVEPLRKVVAES--LHQVK 195
Query: 321 GPLSSIQTLSKMLSLHMKRSE-ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379
P+++++T K+L + + + ++ ++ +DI++Q DRL L + + L + R
Sbjct: 196 NPMTALRTFGKLLLRRLPQDDTLNRELAKDIILQSDRLVDILLPVDAVLGLLATAVERER 255
Query: 380 EETLKKMNNSAYSHP 394
E + + ++ S P
Sbjct: 256 EAQMPGVQDALLSPP 270
>gi|315446748|ref|YP_004079627.1| signal transduction histidine kinase [Mycobacterium gilvum Spyr1]
gi|315265051|gb|ADU01793.1| signal transduction histidine kinase [Mycobacterium gilvum Spyr1]
Length = 394
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPF 546
+E L Q L NL+E AL T GG V++ + GD L + + D G + LT
Sbjct: 267 DEQRLSQVLGNLLENALRHTPSGGSVDV--SCVREGDRLRIAVADTGEGI--AAEHLTRV 322
Query: 547 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
+ + D GL +A+ L+E++G + V T A LG+G T
Sbjct: 323 FERFYRADTARDREHGGAGLGLAIAKALVEAHGGSISV-----TSAGLGTGAT 370
>gi|168702739|ref|ZP_02735016.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
Length = 1573
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
++ LL++ + L Q L+NL+ A T GG++ ++SA GDA+V + D G +
Sbjct: 1312 AEPLLLSADHTRLVQVLANLLNNAAKYTPQGGRI-VLSAQRDGGDAVVTVSDTGVGIPAD 1370
Query: 540 MHSLTPFGSELFSE--NMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
M P ELF++ +E + GLT+ + L+E +G VR SP
Sbjct: 1371 M---LPKVFELFAQVGTSIERSQG-GLGIGLTLVKRLVEMHGGTVRAESP 1416
>gi|399049014|ref|ZP_10740258.1| PAS domain S-box [Brevibacillus sp. CF112]
gi|433544767|ref|ZP_20501142.1| two-component sensor histidine kinase [Brevibacillus agri BAB-2500]
gi|398053212|gb|EJL45415.1| PAS domain S-box [Brevibacillus sp. CF112]
gi|432183956|gb|ELK41482.1| two-component sensor histidine kinase [Brevibacillus agri BAB-2500]
Length = 608
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 12/198 (6%)
Query: 413 KLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR-PCNVSDVLGDL-FEAVRPLAHMQ 470
+L N +++ + I + L L+ G+R C +D+ L + A R +
Sbjct: 411 ELSNRFLKVTMSETERMIRLVNDLLQLSRFDSQGVRLHCKEADISRLLRYAADRFSMFSE 470
Query: 471 QRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q++V+L+ + L V ++ A+ Q L NL+ A+ T GG V ++SA V
Sbjct: 471 QQEVQLTVDVPNKLPPVYIDLDAINQVLDNLLSNAIKYTSQGGTV-VLSAKENRSQKRVQ 529
Query: 529 IDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPW 588
I + L + + GL +AREL++++G + + S W
Sbjct: 530 ISISDTGIGIPARDLKRIFERFYRVDKARSRGQGGTGLGLAIARELVQAHGADIEITSEW 589
Query: 589 KTDAALGSGGTRVELWLP 606
GT V W+P
Sbjct: 590 NV-------GTTVTFWVP 600
>gi|381397955|ref|ZP_09923363.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
gi|380774621|gb|EIC07917.1| ATP-binding region ATPase domain protein [Microbacterium
laevaniformans OR221]
Length = 567
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
+++++ Q + A + A R AL NL+ AL T VGG V I A A D ++ I D
Sbjct: 423 EIDIASAEQIAVFADRDDAAR-ALGNLLSNALKFTPVGGAVRI-EVAGVAADVMLTISDT 480
Query: 533 GPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 590
GP + + PF + E T GL +AR L G V ++S
Sbjct: 481 GPGIGPDALAQVFDPF----YRGEQAEVRATPGTGLGLPIARMLARRNGGEVMIVS---- 532
Query: 591 DAALGSGGTRVELWLPSP 608
L GT+ L LP P
Sbjct: 533 ---LPGHGTKATLLLPRP 547
>gi|317126128|ref|YP_004100240.1| integral membrane sensor signal transduction histidine kinase
[Intrasporangium calvum DSM 43043]
gi|315590216|gb|ADU49513.1| integral membrane sensor signal transduction histidine kinase
[Intrasporangium calvum DSM 43043]
Length = 403
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA-GDALVVIDDDGP--DMHYMMHSL 543
V+ LR+AL NL++ AL T GG V + A P G + + D G D H+
Sbjct: 281 VDADRLREALGNLLDNALRHTPPGGHVAVTMRADPHRGSTDIEVTDTGRGFDPHH----- 335
Query: 544 TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 603
+LF E + GLT+AR L+E++G + +S LG G T +
Sbjct: 336 ---AEQLFHRFHRESADSSGSGLGLTIARALVEAHGGTLTAMS-----EGLGRGAT-FTI 386
Query: 604 WLPSPA 609
LP+ A
Sbjct: 387 TLPTAA 392
>gi|339322159|ref|YP_004681053.1| osmosensitive K+ channel histidine kinase KdpD [Cupriavidus necator
N-1]
gi|338168767|gb|AEI79821.1| osmosensitive K+ channel histidine kinase KdpD [Cupriavidus necator
N-1]
Length = 949
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V +++G A+R ++ +V +++LS+ LV + + + L NL+E A T G
Sbjct: 786 SVEELVGASLAAMRE--ALEHHRVVVADLSRVPLVECDAVLIERVLCNLLENAAKYTPAG 843
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSE--LFSE--NMVEDNMTWNFVA 566
++ + SAAA G+ + ++DDGP + P G E +F + ++ T
Sbjct: 844 TEIRL-SAAAVDGEIRIAVEDDGPGV--------PKGKERQIFEKFTRGERESATAGVGL 894
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
GL V +++++G + V + D G G R + LP P
Sbjct: 895 GLAVCEAIVQAHGGRIWVEPAQRPDRPGGQAGARFLVALPRGNP 938
>gi|428303893|ref|YP_007140718.1| histidine kinase [Crinalium epipsammum PCC 9333]
gi|428245428|gb|AFZ11208.1| histidine kinase [Crinalium epipsammum PCC 9333]
Length = 466
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 284 ICRSLAMAYVMDQKSMLLQQSSWQNNAR-------MSNLVEQIRGPLSSIQTLSKMLSLH 336
I ++L+++ ++DQ+ +Q Q + +L+ Q R PL++++T K+L
Sbjct: 158 IAQTLSLSCILDQRRAWFEQRLSQQQRLQAQQRNILDDLIHQFRNPLTALRTFGKLLLKR 217
Query: 337 MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANI 375
+ + + ++ I+ + DRL+ LQ+ + LT+ N+
Sbjct: 218 LGSGDANREVANSIVRESDRLQEMLQQFDSCLDLTQVNL 256
>gi|337278060|ref|YP_004617531.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729136|gb|AEG91512.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis TTB310]
Length = 1541
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P ++DV+ E+ RPL ++ + + L + + L Q LSNLI A T
Sbjct: 1241 QPVLLADVVAAALESTRPLVRAAGHRLTVRLPQEPLWLQADPLRLGQLLSNLIGNAAKYT 1300
Query: 508 QVGGKVEIVSAAAPAGDALVVIDD----DGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
GGK+E+ + A P + V D+ D ++ M T E N D +
Sbjct: 1301 PHGGKIELSAEADPEQVVVTVADNGIGIDPSEIERMFDLFTQAHDERGRPN---DGLG-- 1355
Query: 564 FVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 606
GL ++R + E +G W A+ G G G+R +L LP
Sbjct: 1356 --IGLALSRSIAELHGG-------WLRAASAGRGQGSRFQLGLP 1390
>gi|220911015|ref|YP_002486324.1| multi-sensor signal transduction histidine kinase [Arthrobacter
chlorophenolicus A6]
gi|219857893|gb|ACL38235.1| multi-sensor signal transduction histidine kinase [Arthrobacter
chlorophenolicus A6]
Length = 563
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P + L + A+RPLA +Q + L + + +E L+Q +NL+ A+
Sbjct: 400 LTPVRLGHTLDLVASALRPLAKLQNVTIALDPVPDDPEILADEIQLQQVFTNLVSNAIKF 459
Query: 507 TQVGGKVEIVSAAAPAGD----ALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNM 560
T GG++E+ S + A D A V + D+G + + H T F + N + +
Sbjct: 460 TPSGGRIEVGSESHAAADGSRWATVRVADNGIGISSDEIDHVFTRF---YRASNAMSGAI 516
Query: 561 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 615
+ GL + ++++ +G + V S LG+ GT V + LP A S N
Sbjct: 517 PGTGL-GLAITKDIVARHGGTIDVAS------TLGA-GTTVTVSLPLDADRSQSN 563
>gi|424670657|ref|ZP_18107680.1| hypothetical protein A1OC_04277 [Stenotrophomonas maltophilia
Ab55555]
gi|401070312|gb|EJP78828.1| hypothetical protein A1OC_04277 [Stenotrophomonas maltophilia
Ab55555]
Length = 467
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG LVV D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVRVQAARVPAGVQLVVED 398
>gi|43294863|gb|AAQ90164.2| putative kinase sensor [Xanthomonas campestris]
Length = 484
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 368 LQVSGDERRLQQVLANLLENALRYTHTGGRVRVQAARVPAGVQLIVED 415
>gi|33594717|ref|NP_882361.1| sensor kinase [Bordetella pertussis Tohama I]
gi|33598903|ref|NP_886546.1| sensor kinase [Bordetella parapertussis 12822]
gi|384206014|ref|YP_005591753.1| putative sensor kinase protein [Bordetella pertussis CS]
gi|33564793|emb|CAE44121.1| putative sensor kinase protein [Bordetella pertussis Tohama I]
gi|33575033|emb|CAE39699.1| putative sensor kinase protein [Bordetella parapertussis]
gi|332384128|gb|AEE68975.1| putative sensor kinase protein [Bordetella pertussis CS]
Length = 487
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 314 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 373
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 374 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 411
>gi|408417454|ref|YP_006628161.1| sensor kinase protein [Bordetella pertussis 18323]
gi|401779624|emb|CCJ65166.1| putative sensor kinase protein [Bordetella pertussis 18323]
Length = 487
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 314 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 373
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 374 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 411
>gi|428226412|ref|YP_007110509.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
gi|427986313|gb|AFY67457.1| multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Length = 1486
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+RP N++ L + VRP A + Q+ L +++ S+ V+ + L+Q NL+ A+
Sbjct: 1184 LRPTNLARALEAALDTVRPTASAKHLQL-LIQIAPSVFVSGDFDRLQQVAWNLLSNAVKF 1242
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDD---GPDMHYMMHSLTPFGSELFSENMVEDNMT-- 561
T GG+V +V + + V+D PD P+ E F + D+ T
Sbjct: 1243 TPEGGQVTVVLVSQESHAEFSVMDTGQGIAPD-------FLPYVFERFRQ---ADDTTSR 1292
Query: 562 --WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT-RVELWL---PSPAPLSD 613
GL + R L+E +G + V SP +G G T RV L L PAP D
Sbjct: 1293 SQGGLGLGLAIVRNLVELHGGTISVESP-----GIGCGATFRVRLPLLQNSQPAPEED 1345
>gi|270308800|ref|YP_003330858.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
gi|270154692|gb|ACZ62530.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
Length = 392
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
P N+ ++L D+ E +RP+ +++ +S L SL +V + L+Q + NL++ A T
Sbjct: 241 PLNIYELLKDVEEIIRPVFESNAQKLTIS-LQNSLPVVVADYKRLKQVILNLLDNATKYT 299
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GG + + SAAA ++ + D+G M
Sbjct: 300 PLGGDIRL-SAAASNKYLVIEVKDNGKGM 327
>gi|338740694|ref|YP_004677656.1| histidine kinase [Hyphomicrobium sp. MC1]
gi|337761257|emb|CCB67090.1| Histidine kinase [Hyphomicrobium sp. MC1]
Length = 294
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSE 549
LRQ N+I AL TQ G VE+++ + +G ++ I D G M + ++TPFG
Sbjct: 168 LRQIFMNIISNALKFTQATGIVEVIAHRSVSGGTIIAIRDSGLGMTAEEIDIAMTPFGQV 227
Query: 550 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
+ + + GL +A+ L+E +G V+ + S + GT V + P+
Sbjct: 228 DSGRSRWREGVGL----GLPIAKALVELHGGVIEIRSKKGS-------GTDVVMAFPA 274
>gi|145294165|ref|YP_001136986.1| hypothetical protein cgR_0123 [Corynebacterium glutamicum R]
gi|57157980|dbj|BAD83954.1| two-component system sensory transduction histidine kinase
[Corynebacterium glutamicum]
gi|140844085|dbj|BAF53084.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 399
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ ++ V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTVRVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVRRQGASTALIHVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|418244074|ref|ZP_12870500.1| hypothetical protein KIQ_01145 [Corynebacterium glutamicum ATCC
14067]
gi|354511870|gb|EHE84773.1| hypothetical protein KIQ_01145 [Corynebacterium glutamicum ATCC
14067]
Length = 399
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ ++ V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTVRVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|410474979|ref|YP_006898260.1| sensor kinase protein [Bordetella parapertussis Bpp5]
gi|408445089|emb|CCJ51886.1| putative sensor kinase protein [Bordetella parapertussis Bpp5]
Length = 471
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 395
>gi|343499841|ref|ZP_08737769.1| two-component sensor histidine kinase [Vibrio tubiashii ATCC 19109]
gi|418481612|ref|ZP_13050641.1| two-component sensor histidine kinase [Vibrio tubiashii NCIMB 1337
= ATCC 19106]
gi|342821681|gb|EGU56448.1| two-component sensor histidine kinase [Vibrio tubiashii ATCC 19109]
gi|384570744|gb|EIF01301.1| two-component sensor histidine kinase [Vibrio tubiashii NCIMB 1337
= ATCC 19106]
Length = 463
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 12/154 (7%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALMRT 507
P N+S+V+ ++ +A +++++ L + L V +P L Q L NL++ A+ T
Sbjct: 315 PTNLSEVIHNVVSWYEDVA--EEKEIALEAIVSDELNIVSDPDKLIQVLVNLVDNAIKYT 372
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GKV I + + G+A++ + D G + H L L+ + N++ + G
Sbjct: 373 NPKGKVTIQAEQSLNGEAVIQVTDTGIGIEPKYHDLV--FERLYRVDSSRSNIS-GYGLG 429
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRV 601
L+ A ++++ G +R+ S LG G T +
Sbjct: 430 LSFAAAIVDNLGGAIRLKSE------LGVGSTFI 457
>gi|407647457|ref|YP_006811216.1| signal transduction histidine kinase [Nocardia brasiliensis ATCC
700358]
gi|407310341|gb|AFU04242.1| signal transduction histidine kinase [Nocardia brasiliensis ATCC
700358]
Length = 341
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P ++ +++ ++ A RP A Q ++ + ++V + AL + L+NL+ A+
Sbjct: 184 LEPVDLRELIDEVLAANRPTAARAQVELRAEQPDSRIVVTANDQALGRVLTNLVSNAIAH 243
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GG+V + SA G A +DD GP +
Sbjct: 244 TPPGGEVAL-SAGTADGQAWARVDDTGPGI 272
>gi|395494258|ref|ZP_10425837.1| sensory transduction histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 469
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
RP N+S+V+G + A +P+A + + L+E L+VA + L Q L+NLI+ A+
Sbjct: 306 FRPVNLSEVIGHVVAAHQPVAEDDGKAL-LAEHEPGLVVAGDAELLAQMLTNLIDNAIRH 364
Query: 507 TQVGGKVEIVSAAAPAGDALV-VIDDDGP 534
T G IVS D+++ I DDGP
Sbjct: 365 TPAGSL--IVSKLERMDDSVIATISDDGP 391
>gi|393777102|ref|ZP_10365395.1| signal transduction histidine kinase [Ralstonia sp. PBA]
gi|392715803|gb|EIZ03384.1| signal transduction histidine kinase [Ralstonia sp. PBA]
Length = 533
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS 542
LR+ALSNL++ A+ VGGKV + + A++VI+D+GP + + S
Sbjct: 408 LREALSNLLDNAIKYVPVGGKVTVRAGYTDTVQAMIVIEDNGPGIPHAQRS 458
>gi|262196308|ref|YP_003267517.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
gi|262079655|gb|ACY15624.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
14365]
Length = 540
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ V+ D E+V L + ++ + + + L V + L Q + NL+ A T+
Sbjct: 252 PVDIASVVADALESVSSLVNARKHTLVCEPIVERLEVFGDRTRLEQVIVNLVANAANYTE 311
Query: 509 VGGKVEIVSAAAPAGDALVVIDDD-GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GG++E+ + + V+D G D + H PF V + + G
Sbjct: 312 PGGRIELSARREGEHIRVAVVDTGVGIDAADIEHIFEPFAQ-------VGEAGSGGLGIG 364
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP----SPAP 610
LT+ R+L+E +G V S G G GT + LP PAP
Sbjct: 365 LTLVRQLVELHGGTVEAESG-------GHGQGTTFRVSLPQGGEQPAP 405
>gi|194367611|ref|YP_002030221.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia R551-3]
gi|194350415|gb|ACF53538.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia R551-3]
Length = 463
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHTGGRVRVQAARVPAGVQLIVED 394
>gi|33603982|ref|NP_891542.1| sensor kinase [Bordetella bronchiseptica RB50]
gi|412340703|ref|YP_006969458.1| sensor kinase protein [Bordetella bronchiseptica 253]
gi|427816991|ref|ZP_18984055.1| putative sensor kinase protein [Bordetella bronchiseptica 1289]
gi|33568958|emb|CAE35372.1| putative sensor kinase protein [Bordetella bronchiseptica RB50]
gi|408770537|emb|CCJ55331.1| putative sensor kinase protein [Bordetella bronchiseptica 253]
gi|410567991|emb|CCN25564.1| putative sensor kinase protein [Bordetella bronchiseptica 1289]
Length = 471
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V A G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHAEGGHAWLVVEDNGPGM 395
>gi|374292999|ref|YP_005040034.1| putative sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357424938|emb|CBS87818.1| putative sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 489
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG-GKVEIVSAAAPAGDALVVIDDDGP 534
++++ L V+ L +AL NL A+ Q G G+V I + PAG + + DDGP
Sbjct: 355 INDIPAGTLAPVDAGQLGRALVNLGRNAV---QAGAGRVRIAARTGPAGLLTLTVADDGP 411
Query: 535 DMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAAL 594
L P E + GL +ARE+L ++G +R++ ++DAA
Sbjct: 412 -------GLAPRARENLFQPFAGSARAGGIGLGLAIAREVLRAHGGELRLV---RSDAA- 460
Query: 595 GSGGTRVELWLP 606
GT L +P
Sbjct: 461 ---GTVFALDIP 469
>gi|68536517|ref|YP_251222.1| two-component system sensor kinase TcsS4 [Corynebacterium jeikeium
K411]
gi|260577650|ref|ZP_05845586.1| two component system sensor kinase TcsS4 [Corynebacterium jeikeium
ATCC 43734]
gi|68264116|emb|CAI37604.1| two-component system sensor kinase TcsS4 [Corynebacterium jeikeium
K411]
gi|258604196|gb|EEW17437.1| two component system sensor kinase TcsS4 [Corynebacterium jeikeium
ATCC 43734]
Length = 375
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q LSNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVLSNLLSNALRHTPAGGQVRISVHRQGASTALIQVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSQDNAGAGIGLTISKALIEAHGGTLTATSP 351
>gi|407688920|ref|YP_006804093.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Balearic Sea AD45']
gi|407292300|gb|AFT96612.1| PAS sensor signal transduction histidine kinase [Alteromonas
macleodii str. 'Balearic Sea AD45']
Length = 943
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P NV ++LG E ++PL +Q + + ++++ + V + L Q SN+I A T
Sbjct: 645 KPVNVCEILGTAIETIQPLIDEKQHTLLVEKVAEPVWVNGDLIRLSQIFSNIINNAAKYT 704
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
GG +E+ + G + + D+G
Sbjct: 705 PPGGNIEVCISTCD-GKVTIAVKDNG 729
>gi|372490129|ref|YP_005029694.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
gi|359356682|gb|AEV27853.1| signal transduction histidine kinase [Dechlorosoma suillum PS]
Length = 462
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 437 LALA---PLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA P + ++P ++ +V+ E P A +R ++L +L+ + L+ L
Sbjct: 298 LALARAEPGGEQAMKPLDLVEVVHQCAETWHPRA--LERNIDLGFDLAPAPLLG-HPRLL 354
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFS 552
+ LSNLI+ A+ T GG V V A G A++ +DD GP + P E
Sbjct: 355 EELLSNLIDNAIHYTPAGGSV-TVRTFARDGAAVLQVDDTGP-------GIAPEQREKVF 406
Query: 553 ENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608
E N N GL + RE+ + +G V W +A + GG R+E+ P P
Sbjct: 407 ERFHRINGEQNPEGCGLGLAIVREIAKQHGADV-----WLDEAPV-LGGARLEVSFPPP 459
>gi|381159061|ref|ZP_09868294.1| PAS domain S-box [Thiorhodovibrio sp. 970]
gi|380880419|gb|EIC22510.1| PAS domain S-box [Thiorhodovibrio sp. 970]
Length = 820
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 18/162 (11%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++D++G+ + + Q ++E L + + V + L+Q L NL+ A+
Sbjct: 502 PIALNDLVGECLPMIETQSREHQIRLECGPL-EDMTVLADRVRLKQVLINLLSNAVKYNS 560
Query: 509 VGGKVEIVSAAAPAGDALVVIDDD--GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG V + +A AG + + D G D + TPF + D
Sbjct: 561 AGGLVRVTAAGTEAGRIRIEVTDTGLGIDNEDIAGLFTPFS------RLARDTDREGTGI 614
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608
GL V R L+E+ G + S LG G W+ P
Sbjct: 615 GLAVCRRLIEAMGGTIGATSQ------LGEGSC---FWMELP 647
>gi|357633132|ref|ZP_09131010.1| signal transduction histidine kinase, nitrogen specific, NtrB
[Desulfovibrio sp. FW1012B]
gi|357581686|gb|EHJ47019.1| signal transduction histidine kinase, nitrogen specific, NtrB
[Desulfovibrio sp. FW1012B]
Length = 620
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 77/178 (43%), Gaps = 31/178 (17%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP +++D+ RP A + ++L+E + + + L QAL NL A+
Sbjct: 458 RPVSLADLAAHAARLTRPDAAARGVDIDLAEAAGGPEIPADPDRLAQALLNLCLNAIQSM 517
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMM----HSLTPFGSELFSENMVEDN 559
+ GG + + + AP G A + + D G P+ + ++ P G+ L
Sbjct: 518 EAGGVMRLATGTAPDGRAFISVADTGSGIDPEERDRIFDPYYTTKPHGTGL--------- 568
Query: 560 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGK 617
GL +A +++ ++G +R+ A GGT ++LP+ +++L K
Sbjct: 569 -------GLPIAHKIVVAHGGEIRL-------ARRPGGGTLATVYLPAATGITNLGDK 612
>gi|32474484|ref|NP_867478.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32445022|emb|CAD75024.1| probable sensory transduction histidine kinase [Rhodopirellula
baltica SH 1]
Length = 304
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 145 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 202
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMMHSLTPFGSELFSE 553
AL NL++ AL GG++ + + G L +ID G D + ++H PF S
Sbjct: 203 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYS----- 257
Query: 554 NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 612
+D + GL AR+++E++G + V S GT+ L P PA L
Sbjct: 258 --TKDGGSG---LGLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPVPARLG 304
>gi|424883850|ref|ZP_18307478.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392515511|gb|EIW40244.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 467
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 458 DLFEAVRPL--AHMQQ---RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL +A R + AH ++ R +++ E + ++V + LR+ L NLI+ A+ T+ G
Sbjct: 323 DLSKAAREILEAHAEEALRRNIDVGLEAVRPVIVDGDATMLREMLVNLIDNAIRYTRPNG 382
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGS-----ELFSENMVEDNMTWNFVA 566
+V + A G+A+V ++D+GP + P G E F M +
Sbjct: 383 RVTVAVGQAD-GNAVVTVEDNGPGI--------PSGEREQVFERFYRIMGTEAEGSGL-- 431
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL++ RE++E G V + D A G GG V + LP
Sbjct: 432 GLSIVREVVEGAGGSVSL------DDAEGGGGLIVTVRLP 465
>gi|375259287|ref|YP_005018457.1| phosphate regulon sensor protein [Klebsiella oxytoca KCTC 1686]
gi|397656268|ref|YP_006496970.1| phosphate regulon sensor protein PhoR [Klebsiella oxytoca E718]
gi|402843134|ref|ZP_10891536.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. OBRC7]
gi|423101552|ref|ZP_17089254.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5242]
gi|365908765|gb|AEX04218.1| phosphate regulon sensor protein [Klebsiella oxytoca KCTC 1686]
gi|376391340|gb|EHT04019.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5242]
gi|394344878|gb|AFN30999.1| Phosphate regulon sensor protein PhoR (SphS) [Klebsiella oxytoca
E718]
gi|402277765|gb|EJU26833.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. OBRC7]
Length = 429
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
QQRQV + +SL V E LR A+SNL+ A+ T G + + AP G AL +
Sbjct: 296 QQRQVLHFSVDESLKVLGNEEQLRSAISNLVYNAVNHTPPGTDITVSWQRAPHG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>gi|404404083|ref|ZP_10995667.1| two-component system sensor histidine kinase/response [Alistipes sp.
JC136]
Length = 1341
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 25/149 (16%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
+VEL E L++ + L + LSNL+ A T VGG VEI +AA G + +
Sbjct: 921 RVELQEFDAGLIMWADIDKLEKMLSNLLSNACKYTPVGGHVEI-AAAERDGRVYTTVTNS 979
Query: 533 GPDM------HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
GP + H T + +S + GL+ + L+E + + + S
Sbjct: 980 GPGIAADKLPHIFERFFTGHTYDRYSSGV-----------GLSYVKSLVELHDGAIEIES 1028
Query: 587 PWKTDAALGSGGTRVELWLPSPAPLSDLN 615
+ TR WLP A +S+++
Sbjct: 1029 -------CENEYTRFTFWLPVRAGVSEVH 1050
>gi|429741766|ref|ZP_19275418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Porphyromonas catoniae F0037]
gi|429158412|gb|EKY00971.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Porphyromonas catoniae F0037]
Length = 398
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 32/167 (19%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQR---QVEL---SELSQSLLVAVEEPALRQALSNLI 500
+RP ++ +V+ +R +A+MQ R QVEL +S++V + EP L NLI
Sbjct: 249 LRPSDLHEVI------LRTIAYMQPRISKQVELIAPKAPEESIIVRLSEPLLAWVFENLI 302
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSE--LFSENMVED 558
+ A+ GK+ I S A + + I D G + P G + +F +
Sbjct: 303 KNAVDAMHGEGKISI-SYIAKEREVYIDITDTGKGI--------PKGRQKTIFRPGITTR 353
Query: 559 NMTWNFVAGLTVARELLESY-GCVVRVISPWKTDAALGSGGT-RVEL 603
W GL++AR ++E Y G + V + LG G T R+EL
Sbjct: 354 QRGWGL--GLSLARRIVEEYHGGRIYV-----HHSTLGVGTTFRIEL 393
>gi|241113400|ref|YP_002973235.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240861608|gb|ACS59274.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 467
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 458 DLFEAVRPL--AHMQQ---RQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
DL +A R + AH ++ R +++ E + ++V + LR+ L NLI+ A+ T+ G
Sbjct: 323 DLSKAAREILEAHAEEALRRNIDVGLEAVRPVIVDGDATMLREMLVNLIDNAIRYTRPNG 382
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGS-----ELFSENMVEDNMTWNFVA 566
+V + A G+A+V ++D+GP + P G E F M +
Sbjct: 383 RVTVAVGQAD-GNAVVTVEDNGPGI--------PSGEREQVFERFYRIMGTEAEGSGL-- 431
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL++ RE++E G V + D A G GG V + LP
Sbjct: 432 GLSIVREVVEGAGGSVSL------DDAEGGGGLIVTVRLP 465
>gi|410626749|ref|ZP_11337501.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM
241]
gi|410153669|dbj|GAC24270.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola mesophila KMM
241]
Length = 660
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P + SD++ E+++ + +E+ SQ+L V + L Q++SN++ A+
Sbjct: 376 LEPTDFSDIVSFTIESLQSALDAKHHTLEIVGTSQALFVNGDSTRLVQSISNVLNNAIKY 435
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFV 565
T GG + + A A V+I D+G + M ELF++ D
Sbjct: 436 TPEGGHITL-ECVADADTVQVIISDNGYGISPSMQGKV---FELFTQVQQTLDRSQGGLG 491
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSG 597
GL + + L++ +G + V S LG G
Sbjct: 492 IGLNIVQRLVQMHGGSISVSS-----QGLGHG 518
>gi|390630653|ref|ZP_10258631.1| Two-component system histidine kinase, sensor protein, phosphate
transport regulon [Weissella confusa LBAE C39-2]
gi|390484120|emb|CCF30979.1| Two-component system histidine kinase, sensor protein, phosphate
transport regulon [Weissella confusa LBAE C39-2]
Length = 456
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQAL 496
+A P +Q P +SD++ D+F++ A QQ ++ +E++ S V + LRQ L
Sbjct: 296 IAKVPERQETPTPIKLSDMVNDIFKSQAENADKQQLTLQ-NEVAPSFTVTQDATVLRQIL 354
Query: 497 SNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+NLI A+ + G V+ VSA A + +V + D G
Sbjct: 355 TNLIVNAVKYNRHDGLVK-VSAMVTASEFVVAVKDTG 390
>gi|359769609|ref|ZP_09273366.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
gi|359312953|dbj|GAB26199.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
Length = 386
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHS 542
V V+ + Q L NL++ AL T GG V + S P G + + D G + ++ H
Sbjct: 262 VTVDPDRIGQVLGNLLDNALRHTPAGGTVTVASTNTPDGWTAITVTDTGEGVPPEHLAHL 321
Query: 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 582
F + + GLT+AR L+E++G +
Sbjct: 322 FDRF----YRADTARGRQEGGSGIGLTIARTLVEAHGGTL 357
>gi|392408182|ref|YP_006444790.1| signal transduction histidine kinase [Anaerobaculum mobile DSM
13181]
gi|390621318|gb|AFM22465.1| signal transduction histidine kinase [Anaerobaculum mobile DSM
13181]
Length = 456
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 412 NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQ 471
N L+ + + L ++ KD+ + +L L ++P +++++L L E + L+ +
Sbjct: 271 NLLRLNHQVLRMERLVKDL---LDMSSLETLSGLDLKPVHLTELLSALIEDYQLLSDARS 327
Query: 472 RQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531
+E++ L ++L V +E LR+A SNL++ A+ + GG++ I A + +V+I +
Sbjct: 328 ITMEVN-LPENLWVKGDEEKLRRAFSNLLDNAIKYNEDGGQIAI-RAEREVAETVVIIKN 385
Query: 532 DGP 534
GP
Sbjct: 386 TGP 388
>gi|423118904|ref|ZP_17106588.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5246]
gi|376399550|gb|EHT12164.1| phosphate regulon sensor protein phoR [Klebsiella oxytoca 10-5246]
Length = 431
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
QQ+Q + ++L+V E LR A+SNL+ A+ T G ++ + AP G AL +
Sbjct: 296 QQKQTLHFHVDETLVVLGNEEQLRSAISNLVYNAINHTPAGTEITVSWQRAPHG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>gi|255324955|ref|ZP_05366063.1| two-component system sensor kinase TcsS4 [Corynebacterium
tuberculostearicum SK141]
gi|255298015|gb|EET77324.1| two-component system sensor kinase TcsS4 [Corynebacterium
tuberculostearicum SK141]
Length = 375
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVESIADTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 ----PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
PD + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPDQ--LGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|445496910|ref|ZP_21463765.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Janthinobacterium sp.
HH01]
gi|444786905|gb|ELX08453.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Janthinobacterium sp.
HH01]
Length = 740
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS--ELSQSLLVAVEEPALRQALSNLIEGALMR 506
P NV+DV+ D E PL +Q + EL+ E+ Q VA + L Q L N++ A
Sbjct: 448 PLNVADVVADAVEQAEPLFQTKQHRFELTLPEVPQQ--VAGDHKRLVQVLVNVLNNAAKY 505
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T VGG +++ + AG +V+ D G M
Sbjct: 506 TPVGGTIKL-AVRGEAGLVRLVVSDSGIGM 534
>gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
G4]
gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
G4]
Length = 766
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 15/276 (5%)
Query: 319 IRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378
+RG + LS L+L R + D+ +QG R T +E D K ++
Sbjct: 347 VRGDARNCVALS--LTLRETRVQRRRDLRTQRSLQGAR---TARERADTSNRLKDELLAT 401
Query: 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLA 438
L+ N Y E +RS S++ ++ + + + S SL DI + LA
Sbjct: 402 VSHELRTPLNVIYGWVEVLRSA-SDDALQQQAIDAIDRSAH--SLTRMVGDI-LDASSLA 457
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
L+ + + P +V + D A + A +E + + +V+ + LRQ LSN
Sbjct: 458 TGKLRLDAM-PVDVVRLFADATSAFQTAASAAGIALEFDCTASACVVSGDAERLRQMLSN 516
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVE 557
L+ AL T GG V V+ A A++ + D G + P+ ++F +
Sbjct: 517 LVSNALKFTPAGGAVT-VTLTHDAAHAVLAVGDTG---QGIASEFIPYVFDMFRRADGSP 572
Query: 558 DNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
+ GL++ R + E +G VRV S + A
Sbjct: 573 ASPRRGLGLGLSIVRHIAELHGGEVRVDSAGRNRGA 608
>gi|423076197|ref|ZP_17064911.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Desulfitobacterium hafniense DP7]
gi|361852760|gb|EHL04974.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Desulfitobacterium hafniense DP7]
Length = 536
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALSNLIEGAL 504
I P ++ DV+ + + PL ++++ ++ S + S + +E LR+ + NL+ AL
Sbjct: 372 IEPIDLVDVINAVESVIEPL--IEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNAL 429
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
T GG++++ V+ + L+ + D+G + P+ E F ++ + +N
Sbjct: 430 KFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIR---KEDQPYIFEKFVQSDSSIHRQYN 486
Query: 564 FVA-GLTVARELLESYGCVVRVISPWKTDAALGSG---GTRVELWL 605
GL +A+EL E +G ++V+S + G G E WL
Sbjct: 487 GSGLGLALAKELAELHGGWIKVVSELDKGSLFTVGIPAGEGKEDWL 532
>gi|168700348|ref|ZP_02732625.1| two-component hybrid sensor and regulator [Gemmata obscuriglobus
UQM 2246]
Length = 475
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALR--QALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
A ++ V L QS + V A+R QA++N+++ AL T GGKV V A A G+
Sbjct: 199 ARFAEKHVALDIEVQSARLPVSGDAVRLEQAIANVLDNALKFTPPGGKVR-VRAEADRGE 257
Query: 525 ALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 582
A V + D G + + H F + D GLT+ + L+E +G +
Sbjct: 258 AKVTVSDTGAGIAPEDLPHVFDLF----VQADRSLDRTVGGLGVGLTIVKGLVELHGGRI 313
Query: 583 RVISPWKTDAALGSGGTRVELWLPSPAP 610
V S LG+G T V L LP P
Sbjct: 314 AVTSD-----GLGAGTTAV-LHLPLAEP 335
>gi|120404639|ref|YP_954468.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium vanbaalenii PYR-1]
gi|119957457|gb|ABM14462.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium vanbaalenii PYR-1]
Length = 379
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD--DGPDMHYMMHSLTPFGSE 549
L Q + NL++ AL T G+VE+ +AA P G+ ++ + D DG ++ H F
Sbjct: 268 LAQVIGNLLDNALRHTPARGRVEVDAAAKP-GEVIITVGDNGDGIAAEHLPHVFERF--- 323
Query: 550 LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPS 607
+ ++ D GL +A+ L E++G + T A+ G G G+ + LP+
Sbjct: 324 -YRADVARDRSHGGAGIGLAIAKALTEAHGGRI-------TAASRGPGMGSTFTIELPA 374
>gi|449134508|ref|ZP_21770004.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
europaea 6C]
gi|448886783|gb|EMB17176.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
europaea 6C]
Length = 281
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 122 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 179
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMMHSLTPFGSELFSE 553
AL NL++ AL GG++ + + G L +ID G D + ++H PF S
Sbjct: 180 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYS----- 234
Query: 554 NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 612
+D + GL AR+++E++G + V S GT+ L P PA L
Sbjct: 235 --TKDGGSG---LGLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPVPARLG 281
>gi|406990053|gb|EKE09748.1| hypothetical protein ACD_16C00116G0003 [uncultured bacterium]
Length = 439
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 20/167 (11%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQR-QVELSELSQSLLVAVEEPALRQALSNLIE 501
+ G+ + +D+ L +A++ +HM ++ E LS + ++ AL++ L+NLI
Sbjct: 289 RGEGLEETSETDMNALLLDAIQGRSHMNKKVHYESQPLSH---LHIKPQALKRCLTNLIN 345
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDN 559
A T+ G +V I +A + + L+ ++DDGP + M PF F + +
Sbjct: 346 NA---TRYGQEVWI-NARSNSESLLISVEDDGPGIPQDKMEEVFKPF----FRLDRSRNV 397
Query: 560 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
T GLT+AR++ S+G + + + GG + L LP
Sbjct: 398 STGGVGLGLTIARDIARSHGGDIHL------SKSKAHGGLCMSLILP 438
>gi|295396501|ref|ZP_06806662.1| two component system sensor kinase [Brevibacterium mcbrellneri ATCC
49030]
gi|294970693|gb|EFG46607.1| two component system sensor kinase [Brevibacterium mcbrellneri ATCC
49030]
Length = 375
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVVVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|83591667|ref|YP_425419.1| signal transduction histidine kinase [Rhodospirillum rubrum ATCC
11170]
gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase
[Rhodospirillum rubrum ATCC 11170]
Length = 620
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RPCN++ ++ + P + ++ + V +E A++Q L NL+ A+ T
Sbjct: 455 RPCNLAAIIRAAERMLGPRVREKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFT 514
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFV 565
GG++ + G ++V+ D GP + ++ L PF + VE
Sbjct: 515 PEGGRITVSLGLNEGGGMVLVVGDTGPGIPAEHLALVLEPF----YQVGEVETRSHEGTG 570
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
GL +A+ L+E + +R+ D+ G GTRV + LP+
Sbjct: 571 LGLPLAKALVEKHEGALRL------DSQPGQ-GTRVSVTLPA 605
>gi|302537328|ref|ZP_07289670.1| two-component system sensor kinase [Streptomyces sp. C]
gi|302446223|gb|EFL18039.1| two-component system sensor kinase [Streptomyces sp. C]
Length = 470
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALMRTQ 508
++ ++ + A RP A +++ V L+E +S + +P AL AL +I+ AL T
Sbjct: 320 TDIGELAAERVAAWRPYA--EEKGVRLTEAGRSAVTGWADPIALSSALDAVIDNALKFTP 377
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
G +VE VS +A ALVV+ D GP + L G + ++ GL
Sbjct: 378 AGEEVE-VSVSAEGRSALVVVADRGPGL--TEEELLRVGDRFWRSGRHQNVKGSGL--GL 432
Query: 569 TVARELLESYG 579
+++R LL S G
Sbjct: 433 SISRALLASGG 443
>gi|386348349|ref|YP_006046597.1| periplasmic sensor Signal transduction histidine kinase
[Rhodospirillum rubrum F11]
gi|346716785|gb|AEO46800.1| periplasmic sensor Signal transduction histidine kinase
[Rhodospirillum rubrum F11]
Length = 580
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RPCN++ ++ + P + ++ + V +E A++Q L NL+ A+ T
Sbjct: 415 RPCNLAAIIRAAERMLGPRVREKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFT 474
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFV 565
GG++ + G ++V+ D GP + ++ L PF + VE
Sbjct: 475 PEGGRITVSLGLNEGGGMVLVVGDTGPGIPAEHLALVLEPF----YQVGEVETRSHEGTG 530
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
GL +A+ L+E + +R+ D+ G GTRV + LP+
Sbjct: 531 LGLPLAKALVEKHEGALRL------DSQPGQ-GTRVSVTLPA 565
>gi|374296535|ref|YP_005046726.1| histidine kinase,HAMP domain-containing protein,histidine kinase
[Clostridium clariflavum DSM 19732]
gi|359826029|gb|AEV68802.1| histidine kinase,HAMP domain-containing protein,histidine kinase
[Clostridium clariflavum DSM 19732]
Length = 461
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
+ + + VEL +V+V+ + Q + NL+ AL T GG VEI A DA+
Sbjct: 330 SDFKNKGVELKVTGNKCIVSVDRDKISQVIVNLLSNALKCTPEGGTVEI-KVAGLEKDAV 388
Query: 527 VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+++ D+G + L + + + T GLT+A+ L+E++ + V S
Sbjct: 389 IIVKDNGIGIE--KEDLPYIFERFYRADRSRNRNTGGSGIGLTIAKSLVEAHRGKIEVKS 446
>gi|226946941|ref|YP_002802014.1| sensory histidine protein kinase TctE [Azotobacter vinelandii DJ]
gi|226721868|gb|ACO81039.1| sensory histidine protein kinase TctE [Azotobacter vinelandii DJ]
Length = 474
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G P + + +L A+ PLAH R V L+ E + V E L + LSNL+
Sbjct: 320 IAEGGAEPVELGSLCRELGLALAPLAHA--RGVALAFEGPGEVWVTGEPTQLNELLSNLV 377
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNM 560
+ AL T GG V + AAP A++ ++DDGP + ++F D
Sbjct: 378 DNALAHTPPGGNVTL-RVAAP---AVLEVEDDGPGIPESAR------QKVFERFQRLDPQ 427
Query: 561 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL + E+ ++ +R++ D A GG RV + P
Sbjct: 428 RGGAGLGLAIVGEICRAHQAAIRLL-----DGA--GGGLRVRIEFP 466
>gi|395649348|ref|ZP_10437198.1| sensor kinase protein [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 438
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 28/125 (22%)
Query: 494 QALSNLIEGAL----MRTQVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMMHSLTP 545
+AL NL+ A R QVG KV P G + +DDDG PD + P
Sbjct: 330 RALQNLLRNATRYCEKRIQVGVKV------CPKG-CEIWVDDDGIGIPPDQRERIFE--P 380
Query: 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
F + + D T F GL ++R +E+ G + T A GG R LWL
Sbjct: 381 F----YRLDRSRDRTTGGFGLGLAISRRAVEAQGGTL-------TAVASPLGGARFRLWL 429
Query: 606 PSPAP 610
P+ AP
Sbjct: 430 PTRAP 434
>gi|127511032|ref|YP_001092229.1| integral membrane sensor signal transduction histidine kinase
[Shewanella loihica PV-4]
gi|126636327|gb|ABO21970.1| integral membrane sensor signal transduction histidine kinase
[Shewanella loihica PV-4]
Length = 419
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P +++D+ DLFE +A + + LS L Q V ++ L QAL NL++ A+
Sbjct: 278 LQPLSLNDLCQDLFEMAEAMAESNGQTLSLS-LDQDYSVMGDKYLLFQALFNLVDNAIKY 336
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+ G K+EI+ ++I D+GP
Sbjct: 337 SGEGAKIEIIQQGNE-----ILIRDNGP 359
>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
gi|198270906|gb|EDY95176.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides plebeius DSM 17135]
Length = 1325
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPA-------LRQALSNLIEGALMRTQVG 510
D+ +R + Q Q ++ ++ S EE LR+ +SNL+ A T VG
Sbjct: 874 DVIAFLREMTEEFQNQAQVKNITFSFRADNEEACCWADRRQLRKVISNLLSNAFKYTPVG 933
Query: 511 GKVEIVSAAAPAGDALVVID 530
GKVE+V+ G + VID
Sbjct: 934 GKVELVAGVTEKGIEIKVID 953
>gi|163748638|ref|ZP_02155891.1| Histidine kinase [Shewanella benthica KT99]
gi|161331748|gb|EDQ02552.1| Histidine kinase [Shewanella benthica KT99]
Length = 174
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA---P 521
P A+ Q+ Q++ E+ Q+L + + L + LSNL++ A+ T GG + I +AA P
Sbjct: 34 PRANTQKVQLDF-EVDQNLSIITDPQILMRVLSNLVDNAIRYTPTGGIISIKLSAANSSP 92
Query: 522 AGDA----LVVIDDDGPDMH-YMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE 576
G + + D+G MH + + +L P ++ D++ GL + R+LL
Sbjct: 93 KGRGHQGIWLSVSDNGSGMHKHELQALQPMRNK---PRFKRDDILPQLGVGLAIVRQLLG 149
Query: 577 SYGCVVRVIS 586
C + + S
Sbjct: 150 LLECNIDIDS 159
>gi|357417166|ref|YP_004930186.1| sensory histidine kinase CreC [Pseudoxanthomonas spadix BD-a59]
gi|355334744|gb|AER56145.1| sensory histidine kinase CreC [Pseudoxanthomonas spadix BD-a59]
Length = 478
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
LALA ++Q+G P + D+ AVR ++E+ +L+ L V + L
Sbjct: 316 LALAEVEQHGWLQSREPVALQDLFSQATGAVRTRLDAADVRLEV-QLADGLAVHGDGFLL 374
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
RQALSNL++ A+ + GG++ ++SA A + + DDGP +
Sbjct: 375 RQALSNLLDNAIAFSPRGGRI-VLSAVAQGDQVEISVRDDGPGV 417
>gi|428780707|ref|YP_007172493.1| histidine kinase [Dactylococcopsis salina PCC 8305]
gi|428694986|gb|AFZ51136.1| histidine kinase [Dactylococcopsis salina PCC 8305]
Length = 485
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 119/274 (43%), Gaps = 62/274 (22%)
Query: 271 YKFSADQRLNAINICRSLAMAYVMDQKSML-------LQQSSWQNNARMSNLVEQIRGPL 323
++F+ QR ++A+A V+DQ+ L Q Q R+ +++ Q+R PL
Sbjct: 186 WEFTQIQR-----TAGTIALACVLDQRYGLSQQKLRQQQWQQEQQRDRLDDILHQLRNPL 240
Query: 324 SSIQTLSKML--SLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381
+++T K+L L+ + ++ S E+IM + DRL+ LQ++ D FL + E
Sbjct: 241 MALRTFGKLLLKRLNPEENQKSRSFAENIMRESDRLQQLLQDMGD--FLEEMG------E 292
Query: 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAP 441
+ + PE GN S P + D+E
Sbjct: 293 EEVTIETETTALPE---------------GNSTVKSLPP----SQVFDLET--------- 324
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALRQALSNL 499
V++V+ + E++R +A Q++ + L +++ SL LV A + L+NL
Sbjct: 325 --------IQVTEVITPILESIRAIA--QEKNITLKTQIPDSLPLVKANRKAFGEVLNNL 374
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
++ A+ T G +E++ + ++I D+G
Sbjct: 375 LDNAIKYTPEKGSIELIIYQENSQKQNLMIRDNG 408
>gi|347736804|ref|ZP_08869353.1| signal transduction histidine kinase [Azospirillum amazonense Y2]
gi|346919588|gb|EGY01060.1| signal transduction histidine kinase [Azospirillum amazonense Y2]
Length = 468
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 17/161 (10%)
Query: 451 NVSDVLGDLFEAVRPL-AHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALMRTQ 508
V D+ ++ AVR + A QR+++++ + L A+ +P ALRQ L NL+ A+ T
Sbjct: 305 KVVDIAAEVAVAVRQIQAGNLQRKIDITVAGVAGLHAMLDPTALRQVLLNLLGNAVKFTP 364
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM-HYMMHSLT--PFGSELFSENMVEDNMTWNFV 565
GG+V + + G AL VI D GP + Y++ +L PF L +E + + +
Sbjct: 365 DGGRVTVSADIRREGLALSVI-DTGPGISRYVLENLGTQPF---LQAEPSLRRRHGGSGL 420
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL + R L+E +G + V P GGTRV + P
Sbjct: 421 -GLFIVRRLMELHGGSLLVECP-------PGGGTRVTVIFP 453
>gi|359795261|ref|ZP_09297886.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter arsenitoxydans SY8]
gi|359366680|gb|EHK68352.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter arsenitoxydans SY8]
Length = 470
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G P +++D+ + + P A +Q + L + +V+ E LR+A+S
Sbjct: 297 ASLAEGGFAAEPVDLADLADGVIRTLLPAARARQLDIGLEANCRPAMVSGAEWLLREAVS 356
Query: 498 NLIEGALMRTQVGG----KVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ GG ++EI SA +A + ++DDGP M
Sbjct: 357 NLVDNAIRYAAQGGVVTVRIEIGSA-----EARLAVEDDGPGM 394
>gi|88797981|ref|ZP_01113568.1| sensor histidine kinase PhoQ, putative [Reinekea blandensis MED297]
gi|88779178|gb|EAR10366.1| sensor histidine kinase PhoQ, putative [Reinekea sp. MED297]
Length = 448
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
C+++ + L +A+ + + +++ E +SL VA++ + + + NLIE +
Sbjct: 306 CDLTGAVSRLGKALEKAFMHEDKVLDIPETDESLFVAMDSNDVLEVMGNLIENGF---KY 362
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLT 569
G V +VS +V IDDDGP + ++ + D++ GL
Sbjct: 363 GRSVIMVSYERTEQQVMVHIDDDGPGIS------GEASKQILTRGKRLDSIQPGQGIGLA 416
Query: 570 VARELLESYGCVVRV-ISPWKTDAALGSGGTRVELWLP 606
+ ++L+SYG V+ + SP GG R L LP
Sbjct: 417 MVNDILDSYGLVLTIATSP--------LGGARFSLSLP 446
>gi|108762872|ref|YP_634150.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
gi|108466752|gb|ABF91937.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
Length = 548
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-------------SLL 484
A+ L++ IR + D++ DL + VRPL + R V+L EL + +L
Sbjct: 367 AVGMLEEEAIR---LEDIVRDLLDVVRPL-EPRPRPVQLGELVRRALGQMHGPPDAPTLR 422
Query: 485 VAVEEPA-----------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+V+E A L+ A+++L+ A+ + GGKV + A G LVV +D+G
Sbjct: 423 FSVDEAAETPPLEGDETLLQLAVTHLVRNAVQASPAGGKVRMTVEPADGGVRLVV-EDEG 481
Query: 534 PDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 591
P + + PF F + GL + R ++ ++ VR S +
Sbjct: 482 PGIPDVDPQRVFQPF----FLTRANGRGL------GLAIVRRVVLAHEGSVRASSRTR-- 529
Query: 592 AALGSGGTRVELWLP 606
GG R ELWLP
Sbjct: 530 -----GGARFELWLP 539
>gi|444305833|ref|ZP_21141610.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
SJCon]
gi|443481887|gb|ELT44805.1| multi-sensor signal transduction histidine kinase [Arthrobacter sp.
SJCon]
Length = 556
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 17/173 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + L + A+RPLA +Q +E+ + + + +E L+Q +NL+ A+ T
Sbjct: 395 PVRLGQTLDLVAAALRPLAKLQNVTIEVDPVPEDPEILADEVQLQQVFTNLVSNAIKFTP 454
Query: 509 VGGKVEIVSAAAPAGD----ALVVIDDDGPDMHY--MMHSLTPFGSELFSENMVEDNMTW 562
GG++E+ S + A D A V + D G + + H T F + N + +
Sbjct: 455 SGGRIEVGSESHAAEDGTRWATVSVADTGIGISSDEIDHVFTRF---YRASNAMSGAIPG 511
Query: 563 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLN 615
+ GL + ++++ +G + V S LG+ GT V + LP A S N
Sbjct: 512 TGL-GLAITKDIVVRHGGKIDVAS------TLGA-GTTVTVSLPLDADRSRAN 556
>gi|392378162|ref|YP_004985321.1| putative two-component sensor histidine kinase (fragment), partial
[Azospirillum brasilense Sp245]
gi|356879643|emb|CCD00563.1| putative two-component sensor histidine kinase (fragment)
[Azospirillum brasilense Sp245]
Length = 245
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTP 545
A E L + L NL++ A+ G +VE+ S G VV++DDGP +
Sbjct: 135 AGEREDLDEMLGNLLDNAM--KWAGSRVEVASRLEAGGMLAVVVEDDGPGLPADRR---- 188
Query: 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
+ + + D T GL V R++ YG +R+ D+ L GG RVEL L
Sbjct: 189 --DAVLAPGVRLDESTPGSGLGLAVVRDVARLYGGDLRL-----GDSPL--GGLRVELVL 239
Query: 606 PSPAP 610
P+ AP
Sbjct: 240 PAAAP 244
>gi|238028503|ref|YP_002912734.1| sensor histidine kinase [Burkholderia glumae BGR1]
gi|237877697|gb|ACR30030.1| sensor histidine kinase [Burkholderia glumae BGR1]
Length = 439
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNG---IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G I P + +VL A +A Q+R ++L E ++ ++ + AL
Sbjct: 271 LALARSEPDGAGVIEPVALDEVLAGCVSAYAIVA--QKRGIDLGIEATEPAVIDADIGAL 328
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R ++N+++ A+ T GG++++ AP G ALV I D GP +
Sbjct: 329 RVMINNVLDNAVKYTPDGGRIDVSLGFAPDGPALVRIADSGPGI 372
>gi|17547655|ref|NP_521057.1| transmembrane sensor kinase transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|17429959|emb|CAD16643.1| putative transmembrane sensor kinase transcription regulator
protein [Ralstonia solanacearum GMI1000]
Length = 500
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 37/177 (20%)
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
AV LT+A E L++ + P +R L+ +R S N+L +
Sbjct: 264 AVLLTQA------EYALRETD------PVRVREGLAAIIARLQSTNRLTSQL-------- 303
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV----RPLAHMQQRQV--ELSELS 480
LALA + G + LG+L +V PLA +Q+ + + S L+
Sbjct: 304 ----------LALARARHAGQDAPPETFDLGELARSVVVDALPLAREKQQDLGWDDSGLA 353
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537
+L V+ LR+ALSNL+ A+ T GG++ V A + ALV +DD GP M+
Sbjct: 354 AALPVSGYPAFLREALSNLVHNAIRYTPPGGRI-TVRAIKDSDAALVCVDDTGPGMN 409
>gi|308808247|ref|XP_003081434.1| COG0642: Signal transduction histidine kinase (ISS) [Ostreococcus
tauri]
gi|116059896|emb|CAL55603.1| COG0642: Signal transduction histidine kinase (ISS) [Ostreococcus
tauri]
Length = 457
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKM 332
FS+ Q+ + + A+ + + ++L ++++ + ++ + + R PL++++TL M
Sbjct: 150 FSSKQKQFLESAANAFTDAWAIHRNNVLAAAAAYRADQKLGVYLYESRQPLNALRTLGGM 209
Query: 333 LSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF---LTKANIVRY 378
L +H+K + + D+ E ++ QGD L ++L+ ++ TK V Y
Sbjct: 210 LKIHLKPDDPAGDMAEAMVQQGDALAELSRQLESVLYPNATTKIEGVSY 258
>gi|398863806|ref|ZP_10619348.1| signal transduction histidine kinase [Pseudomonas sp. GM78]
gi|398246221|gb|EJN31717.1| signal transduction histidine kinase [Pseudomonas sp. GM78]
Length = 462
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|386856882|ref|YP_006261059.1| sensor histidine kinase [Deinococcus gobiensis I-0]
gi|380000411|gb|AFD25601.1| sensor histidine kinase [Deinococcus gobiensis I-0]
Length = 422
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ D+ G+ + ++PLA +R +L Q + + L L NLI A+ T
Sbjct: 282 PVDLLDLAGEAVDLLQPLAS--RRGTDLWLDGQPTPLRGDSALLGSVLENLIGNAIKFTP 339
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNM-TWNFVAG 567
GG+V++ G +V++D+GP F S +E V F G
Sbjct: 340 EGGRVQVQVTPLRGGAGRLVVEDNGPG----------FPSGTLTEAFVRGQADVEGFGLG 389
Query: 568 LTVARELLESYGCVV 582
L V RE++E++G +
Sbjct: 390 LAVVREVVEAHGGTL 404
>gi|94314592|ref|YP_587801.1| sensory histidine kinase in two-component regulatory system with
CopR, senses copper ions [Cupriavidus metallidurans
CH34]
gi|93358444|gb|ABF12532.1| sensory histidine kinase in two-component regulatory system with
CopR, senses copper ions [Cupriavidus metallidurans
CH34]
Length = 462
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
G LFE LA + +QV L L +V + LR+ALSNL+ AL T G V +V
Sbjct: 320 GALFEFYEALA--EDKQVAL-RLQGDGIVEGDRLMLRRALSNLLSNALRHTPQAGAV-VV 375
Query: 517 SAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA-GLTVARELL 575
A A +V +++DGP++ + L+ F + + V GL++ R ++
Sbjct: 376 EAHAEGDSVVVAVENDGPEIPAEL--LSSLFDRFFRGDKSRRRPESDSVGLGLSITRAIM 433
Query: 576 ESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
++G + V S +G TR L P
Sbjct: 434 TAHGGGISVQSA--------NGKTRFVLRFP 456
>gi|417304268|ref|ZP_12091297.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica WH47]
gi|421611151|ref|ZP_16052302.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica SH28]
gi|327539480|gb|EGF26095.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica WH47]
gi|408497965|gb|EKK02473.1| integral membrane sensor signal transduction histidine kinase
[Rhodopirellula baltica SH28]
Length = 255
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 96 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 153
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMMHSLTPFGSELFSE 553
AL NL++ AL GG++ + + G L +ID G D + ++H PF S
Sbjct: 154 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYS----- 208
Query: 554 NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 612
+D + GL AR+++E++G + V S GT+ L P PA L
Sbjct: 209 --TKDGGSG---LGLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPVPARLG 255
>gi|315121866|ref|YP_004062355.1| two-component sensor histidine kinase transcriptional regulatory
protein [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 498
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMHS 542
V +E +RQ + NL+ A+ T +GGKV + G + I D+GP + M
Sbjct: 361 VWADEKGMRQVILNLLSNAVKFTSIGGKVRVKVGWTAGGGQYISIKDNGPGISEGEMPTV 420
Query: 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
L+ FG + E + GL + + ++ ++G R+ S
Sbjct: 421 LSSFGQGSIAIKSAEQGVG----LGLPIVQSIMANHGGQFRIKS 460
>gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
Length = 561
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALSNLIEGAL 504
I P ++ DV+ + + PL ++++ ++ S + S + +E LR+ + NL+ AL
Sbjct: 397 IEPIDLVDVINAVESVIEPL--IEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNAL 454
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
T GG++++ V+ + L+ + D+G + P+ E F ++ + +N
Sbjct: 455 KFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIR---KEDQPYIFEKFVQSDSSIHRQYN 511
Query: 564 FVA-GLTVARELLESYGCVVRVISPWKTDAALGSG---GTRVELWL 605
GL +A+EL E +G ++V+S + G G E WL
Sbjct: 512 GSGLGLALAKELAELHGGWIKVVSELDKGSLFTVGISAGEGKEDWL 557
>gi|92116063|ref|YP_575792.1| sensor signal transduction histidine kinase [Nitrobacter
hamburgensis X14]
gi|91798957|gb|ABE61332.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14]
Length = 607
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
L Q +SNL+ A ++ GG+V IV + D +V+DDDGP + P E
Sbjct: 490 LGQVISNLLTNAQSFSKSGGRVRIVCRRLKS-DIEIVVDDDGP-------GIRPDALERV 541
Query: 552 SENMVED----NMTWNFVAGLTVARELLESY-GCVVRVISPWKTDAALGS--GGTRVELW 604
E D N GL+++++++E++ G + P DA + G R +
Sbjct: 542 FERFYTDRPHQGFGQNSGLGLSISKQIIEAHRGRIWAENRPGPIDAHGDTRIAGARFVVR 601
Query: 605 LPSPAP 610
LP+PAP
Sbjct: 602 LPAPAP 607
>gi|300780102|ref|ZP_07089958.1| sensor histidine kinase [Corynebacterium genitalium ATCC 33030]
gi|300534212|gb|EFK55271.1| sensor histidine kinase [Corynebacterium genitalium ATCC 33030]
Length = 398
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMM 540
V V+ Q + NL+ AL T GG+V++ A AL+ I D G PD +
Sbjct: 251 VMVDRQRFGQVMGNLLSNALRHTPTGGRVQVTVRQQGASAALIDITDTGDGIPPDQ--LE 308
Query: 541 HSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GT 599
H F + + GLT++R L+E++G + SP G+G G+
Sbjct: 309 HIFERF----YRGDTARSRDKGGAGIGLTISRALIEAHGGTLTAASP-------GAGHGS 357
Query: 600 RVELWLPSPAPLSD 613
L LP +P+ +
Sbjct: 358 VFTLRLPLSSPVKE 371
>gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1172
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQS-LLVAVEEPALRQALSNLIE 501
Q RPC++ D+ ++ E+ P + Q++++ L ++ S + LLV ++ + + NL+
Sbjct: 602 QPSFRPCSLVDLCRNIVESFTP--YCQKKELSLVTDFSDTCLLVYLDVEKFDKVIYNLLS 659
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
A+ T GG + I S + L+ ++D G + PF + F + N +
Sbjct: 660 NAMKFTPAGGSIRI-SIESSQEYCLLKVEDTGIGIR---QEQIPFLFQRFRQAEGSANRS 715
Query: 562 WNFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
+ GL + +EL+E +G + V S + GT ++W+
Sbjct: 716 YEGSGLGLALVKELVELHGAQISVESVY-------GQGTTFKVWM 753
>gi|428218786|ref|YP_007103251.1| histidine kinase [Pseudanabaena sp. PCC 7367]
gi|427990568|gb|AFY70823.1| histidine kinase [Pseudanabaena sp. PCC 7367]
Length = 383
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 30/216 (13%)
Query: 283 NICRSLAMAYVMDQKSMLLQQSSWQN----NARMSNLVEQIRGPLSSIQTLSKMLSLHMK 338
I +LA+A +D++ L++S Q +S ++ Q+R PL++I+T +K+L+ +
Sbjct: 113 QIANTLAIACALDRRCQWLEESQKQTYLGQQQFLSTVMHQLRNPLTAIKTFAKLLARRIA 172
Query: 339 RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIR 398
+ V I+ + ++ L E+ A RY E L + P S
Sbjct: 173 PDNPMHRFVSGILQESQHMQDILAEVDQA---------RYAAEELALPQQEMFLLPAS-- 221
Query: 399 SQLSNNFSRENSGNKLQNSCKPLSLDTPA----KDIEM-PMPPLALAPLKQNGIRPCNVS 453
+ E + L PL T A K + P L P+K NG +
Sbjct: 222 -------TLELAATDLAEILTPLLRSTEAIAETKGLSFRAYMPAELPPIKANG---GALR 271
Query: 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE 489
+VLG+L + Q ++ + L +++ +A+++
Sbjct: 272 EVLGNLLDNAVKYTPQGQVEIAVRVLPETVAIAIKD 307
>gi|383774876|ref|YP_005453945.1| integral membrane sensor signal transduction histidine kinase
[Bradyrhizobium sp. S23321]
gi|381363003|dbj|BAL79833.1| integral membrane sensor signal transduction histidine kinase
[Bradyrhizobium sp. S23321]
Length = 449
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 19/134 (14%)
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-- 533
+ E ++ +V + ALR+ L+N+I+ AL G V A G +V IDD+G
Sbjct: 327 IDERVRNAVVLGDRLALRRILANIIDNALAY----GHAAHVRTALKDGAVVVSIDDEGAG 382
Query: 534 -PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDA 592
PD L PF S N T GL V R L+E++G + + A
Sbjct: 383 IPD-DQRQAVLEPFLRLEKSRN----RATGGAGLGLAVVRSLVEAHGGTIGI-------A 430
Query: 593 ALGSGGTRVELWLP 606
A GGTRV + LP
Sbjct: 431 AASGGGTRVNVTLP 444
>gi|296119389|ref|ZP_06837952.1| two-component system sensor kinase TcsS4 [Corynebacterium
ammoniagenes DSM 20306]
gi|295967618|gb|EFG80880.1| two-component system sensor kinase TcsS4 [Corynebacterium
ammoniagenes DSM 20306]
Length = 382
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|429767816|ref|ZP_19300000.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
gi|429189774|gb|EKY30593.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Brevundimonas diminuta 470-4]
Length = 486
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 508 QVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
+ GGK I VSAA +A ++I D+GP + P +E E V + T
Sbjct: 400 ETGGKGAITVSAANEGAEAAILIADNGP-------GIPPRLAERLFEPFVSGSKTDGTGL 452
Query: 567 GLTVARELLESYGCVVRVI--SPWKTDAALGSGGTRVELWLP 606
GLT++REL ++G + ++ PW G R EL LP
Sbjct: 453 GLTISRELAANHGGSLTLVDTGPW---------GARFELRLP 485
>gi|108761310|ref|YP_634131.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
gi|108465190|gb|ABF90375.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
Length = 463
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 466 LAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525
LA + VE S ++L V L QAL NL+ A+ + GG V + A G
Sbjct: 324 LARLLGLTVECSRPDEALWVRCNPTMLEQALGNLLHNAVTHGEAGGHVVALLEDAEPGRF 383
Query: 526 LVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
+ + DDGP + L G F T GL++ REL G
Sbjct: 384 RLTVLDDGPGLS--AEELERLGERGFRAQATRRRATRGSGLGLSIVRELCHRVG 435
>gi|318041851|ref|ZP_07973807.1| two-component sensor histidine kinase [Synechococcus sp. CB0101]
Length = 438
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
AP +Q+ R ++ D+ DL R A QQ Q++ ++L + ++ LR+ LSNL
Sbjct: 283 APDQQHWQR-FDLCDLAEDLVALYRDRAASQQLQLK-ADLQRPAMIHGHPEQLRRLLSNL 340
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDN 559
+ A+ T GG V + +VV+DD+GP + L E F + +
Sbjct: 341 LVNAMQFTPPGGSVAL-QVQLQGHQVMVVVDDEGPGIPAAQRRLV---FERFWQADAARS 396
Query: 560 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609
N GL++AR + + +G V+ SGG R+ + LP+ A
Sbjct: 397 GP-NSGLGLSIARGIAQVHGGVIEAQGS-------SSGGCRMAVQLPAAA 438
>gi|133757365|ref|YP_001096245.1| hypothetical protein [Corynebacterium sp. L2-79-05]
gi|110084140|gb|ABG49294.1| hypothetical protein [Corynebacterium sp. L2-79-05]
Length = 382
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51]
gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 564
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALSNLIEGAL 504
I P ++ DV+ + + PL ++++ ++ S + S + +E LR+ + NL+ AL
Sbjct: 400 IEPIDLVDVINAVESVIEPL--IEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNAL 457
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
T GG++++ V+ + L+ + D+G + P+ E F ++ + +N
Sbjct: 458 KFTPEGGEIKVWVAYDQERNEVLINVQDNGIGIR---KEDQPYIFEKFVQSDSSIHRQYN 514
Query: 564 FVA-GLTVARELLESYGCVVRVISPWKTDAALGSG---GTRVELWL 605
GL +A+EL E +G ++V+S + G G E WL
Sbjct: 515 GSGLGLALAKELAELHGGWIKVVSELDKGSLFTVGISAGEGKEDWL 560
>gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.]
Length = 1155
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ D + + E+ RP + +++ + L +EL + V ++ + + NL+
Sbjct: 581 QPSFRPCDLVDFVSQIVESFRP--YCEKKALHLTTELDECPTVYIDMEKFDKVVYNLLSN 638
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTW 562
A+ T GG + V + ++ + D G ++ P E F + +N ++
Sbjct: 639 AMKFTPEGGTIS-VKLQSQGHHCILQVQDTGIG---IVKEQIPHLFERFRQAEGSENRSY 694
Query: 563 NFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
GL + +EL+E +G V V D+ G GT LWL
Sbjct: 695 EGSGLGLALVKELVELHGGRVTV------DSVYGK-GTTFTLWL 731
>gi|431795241|ref|YP_007222146.1| signal transduction histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785467|gb|AGA70750.1| signal transduction histidine kinase [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 564
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 17/155 (10%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQALS 497
A K+ + P ++ DV+ + + PL ++++ + S L S + +E +LR+ +
Sbjct: 393 AGRKELVLEPIDLVDVINAVESVIEPL--IEKKGISFSSLVSSDVPVIEGDRESLRRIVE 450
Query: 498 NLIEGALMRTQVGGKVEI-VSAAAPAGDALVVIDDDG-----PDMHYMMHSLTPFGSELF 551
NL+ A+ T GGK+E+ V+ + L+ + D+G D+ Y+ S +
Sbjct: 451 NLVSNAIKFTPTGGKIEVRVNYDLDKNEVLINVQDNGIGIRKEDLPYIFDKFVQGDSSIH 510
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ GL +A+EL E +G ++V+S
Sbjct: 511 RQYSGSG-------LGLALAKELAELHGGWIKVVS 538
>gi|406963451|gb|EKD89494.1| integral membrane sensor signal transduction histidine kinase
[uncultured bacterium]
Length = 154
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N++D + +L V L+ Q R V L+ + + + L+Q L +++ A+ T
Sbjct: 7 PVNMADFMPELLRQVERLS--QTRSVLLNHEINPIKINADPVRLKQVLLIILDNAVRNTP 64
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA-- 566
GG V I A+ A LV IDD+GP + M L F V+D + ++
Sbjct: 65 SGGTVGI-KVASSANKGLVEIDDNGPGIPAEM--LEKVFDRFFK---VDDQPSMDYRGSG 118
Query: 567 -GLTVARELLESYGCVVRVISPWKTDAALGS 596
GL++A+ L+++ + ++S DA G+
Sbjct: 119 LGLSIAKSLVDAQNGGITIVS----DAGKGT 145
>gi|296445085|ref|ZP_06887046.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
gi|296257506|gb|EFH04572.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
Length = 616
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 463 VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV----SA 518
+RPLA ++R L S+ L Q NLI+ A + G V + A
Sbjct: 467 IRPLADARRRWRVLGHDSR----------LAQVFDNLIDNARSFSAPGNGVRVTLRGEQA 516
Query: 519 AAPAGDAL----VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 574
P G L +++DDDGP + E F + E N GL+++R++
Sbjct: 517 IGPGGQMLDGYEIIVDDDGPGIPADAFERI---FERFYTDRPEQGFGQNSGLGLSISRQI 573
Query: 575 LESYGCVVRVIS-----PWKTDAALGSG---GTRVELWLPS 607
+E++ +R ++ P TD+A G R +WLP+
Sbjct: 574 VEAHNGRIRAMNRTKAEPEGTDSARPGDETVGARFVIWLPA 614
>gi|311739316|ref|ZP_07713152.1| two component system sensor kinase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305614|gb|EFQ81681.1| two component system sensor kinase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 370
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 ----PD-MHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
PD + Y+ + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPDQLGYIF-------ERFYRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|340620094|ref|YP_004738547.1| two-component system-sensor histidine kinase [Zobellia
galactanivorans]
gi|339734891|emb|CAZ98268.1| Two-component system-Sensor histidine kinase [Zobellia
galactanivorans]
Length = 497
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
+ P+K+ P +++++ DL R LA +Q +++L ++ +V + + +AL N
Sbjct: 342 VTPVKE----PFSITELSHDLIAKFRVLAEQKQIELQLDNPQENCMVFADVSLVERALQN 397
Query: 499 LIEGALMRTQVGGKVEI 515
LIE AL TQ GKV +
Sbjct: 398 LIENALKYTQANGKVTL 414
>gi|154253689|ref|YP_001414513.1| integral membrane sensor signal transduction histidine kinase
[Parvibaculum lavamentivorans DS-1]
gi|154157639|gb|ABS64856.1| integral membrane sensor signal transduction histidine kinase
[Parvibaculum lavamentivorans DS-1]
Length = 377
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 463 VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA 522
VR LA Q+ + + S + E +RQ L N++ A+ T+ GG V + + P
Sbjct: 222 VRSLAERQEISLSTAAAETSAYLVGVERMVRQVLINVLSNAIKFTERGGSVTVAAEHRPN 281
Query: 523 GDALVVIDDDGPDMH--YMMHSLTPFG 547
G+ +V I D G M + +LTPFG
Sbjct: 282 GNLVVSISDTGIGMSPDEVKVALTPFG 308
>gi|108760500|ref|YP_633363.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
gi|108464380|gb|ABF89565.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
Length = 490
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R ++ L DL + PLA R + L S S +V + LR AL+NL++ AL
Sbjct: 330 RALDLVQQLRDLISDMAPLALRSGRAIALEAASPSEMVLGQADGLRSALANLLDNALRAE 389
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE----DNMTWN 563
GG V IV A V + D GP + E EN+ E W+
Sbjct: 390 PAGGTV-IVRMEASTSSVTVDVVDHGPGVE-----------ESDRENIFEPFWRREGQWS 437
Query: 564 FVA-GLTVARELLESYG 579
GL +AR + E +G
Sbjct: 438 GTGLGLAIARRISEGHG 454
>gi|119487843|ref|ZP_01621340.1| Histidine Kinase [Lyngbya sp. PCC 8106]
gi|119455419|gb|EAW36557.1| Histidine Kinase [Lyngbya sp. PCC 8106]
Length = 470
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 90/414 (21%), Positives = 161/414 (38%), Gaps = 106/414 (25%)
Query: 199 EQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258
EQR V P+++ V+GFLV +S E + P E H
Sbjct: 116 EQRQFVLPLMRDGVVLGFLV-----------------------TSREDRPWTPQ---EQH 149
Query: 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQN-------NAR 311
I++ H +L A ++D++ QQ Q +
Sbjct: 150 QIQAIAH---------------------TLTTACILDRRFQWFQQQFTQQQQLQAQQHDT 188
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+ +L+ Q++ PL++++T K+L + + ++ I + I+ + +RL LQ++ D
Sbjct: 189 LHSLMHQLKSPLTAVRTFGKLLLKRLLPEDKNHRIADGILRESNRLEELLQQV-DQTLTL 247
Query: 372 KANIVRYNEETLKKM--NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKD 429
++R + ++ + PES +Q ENS +P
Sbjct: 248 NDELIRLPTSFDPSIIPSSETLTPPESYLTQ-------ENS-------------PSPRTT 287
Query: 430 IEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVE-LSELSQSL-LVAV 487
++ +P A PL+ ++ VL L + + +A ++R + ++E+ L LV
Sbjct: 288 TQVLLP--ASQPLEATSVK-----AVLEPLIVSAQAIA--EERDLHCIAEIPPQLPLVQA 338
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEI-----VSAAAPAGDALVVIDDDGPDM--HYMM 540
ALR+ LSNLI+ AL T G + I P+ + I D GP + +
Sbjct: 339 HSKALREVLSNLIDNALKYTPAVGCIYIRVHQPPHPNQPSNQLAIAISDTGPGIPQEDLE 398
Query: 541 HSLTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTD 591
H LF T + GL +A++L+E ++V SP D
Sbjct: 399 H--------LFQRGYRGIQATGHIPGTGLGLAIAQDLMEEMQGKIQVFSPVNLD 444
>gi|310824268|ref|YP_003956626.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309397340|gb|ADO74799.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 478
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD-GPDMHYMMHSLTPFGSEL 550
LR+AL NL++ A ++ G V + + A P G L VID+ G D + H TPF
Sbjct: 350 LRRALDNLLDNAGKYSEPGTTVRLRAQALPTGLQLEVIDEGIGIDASDLPHLFTPF---- 405
Query: 551 FSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPS 607
F + T GL +AR ++ +G + + S P + GT V ++LP+
Sbjct: 406 FRSDRSRARTTGGVGLGLALARRIIVVHGGNLTLESQPGQ--------GTSVRVFLPA 455
>gi|405355837|ref|ZP_11024949.1| sensor histidine kinase [Chondromyces apiculatus DSM 436]
gi|397091109|gb|EJJ21936.1| sensor histidine kinase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 463
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
VE S ++L V L QAL NL+ A+ + GG V V A G + + DDG
Sbjct: 332 VECSRPDEALWVRCNPTMLEQALGNLLHNAVTHGEEGGHVVAVLEDAEPGRFRLTVLDDG 391
Query: 534 PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
P + L G F T GL++ REL G
Sbjct: 392 PGL--TAEELGRMGERGFRTQATRRRATRGSGLGLSIVRELCHRVG 435
>gi|312194914|ref|YP_004014975.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. EuI1c]
gi|311226250|gb|ADP79105.1| integral membrane sensor signal transduction histidine kinase
[Frankia sp. EuI1c]
Length = 577
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 445 NGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
GI VSD+ ++EA+ L + +L L V + AL Q ++NL++ AL
Sbjct: 328 TGIDDTTVSDLPEVVYEALGSLRNAALVNAVTVDLPDHLPVRMSREALHQVVANLVDNAL 387
Query: 505 MRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMT 561
+ + G V ++ A GD +V+ + + GPD+ + PF S D
Sbjct: 388 VHSWPGAPVRLI--AGRVGDEVVLRVRNPGPDLDKETIARLFEPFTQRDGSATRPTDGAG 445
Query: 562 WNFVAGLTVARELLESYGCVVRVIS 586
GL V R L+E +G +R+ S
Sbjct: 446 ----MGLYVVRRLVEVHGGRLRMTS 466
>gi|393724369|ref|ZP_10344296.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26605]
Length = 837
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
L Q +SNL+ AL T GG V I G ALV +DDDGP + FG F
Sbjct: 473 LLQVISNLVSNALRVTATGGVVAIRVTQTDDGKALVAVDDDGPGIPLAFRDRI-FGR--F 529
Query: 552 SENMVEDNMTWNFVAGLTVARELL 575
+E + GL ++RE++
Sbjct: 530 ERAAMERGVGAGL--GLAISREII 551
>gi|406836491|ref|ZP_11096085.1| integral membrane sensor signal transduction histidine kinase
[Schlesneria paludicola DSM 18645]
Length = 562
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
LKQ+ + ++ ++ D E VRPLA +QR ++L + +V + L Q L+NL+
Sbjct: 384 LKQDSV---DLEPLIQDCVELVRPLA--EQRGIQLESETSPCIVVGDGDKLAQVLTNLLS 438
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
A+ G+V V+ A++ + D G + L + N
Sbjct: 439 NAIRYNVENGRVR-VTTGTDGQLAILEVTDTG--IGIPGDQLELIFDRFYQVNKARSRAE 495
Query: 562 WNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL 614
+ GL++ + ++E++G +RV S GT VE+ LP P++ +
Sbjct: 496 GSCGLGLSICKTIVEAHGGTIRVSSELNV-------GTTVEVRLPLVRPVTKV 541
>gi|337278056|ref|YP_004617527.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729132|gb|AEG91508.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis
TTB310]
Length = 720
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 11/161 (6%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++DVL E+ RP S SL V + L Q SNL+ A T+ G
Sbjct: 422 ELADVLRAAVESSRPEMERMGHDFRCSPPQASLPVHGDAVRLAQVFSNLLNNAAHYTERG 481
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFVAGLT 569
G++E+ SA A AG A V + D+G + P E+FS+ + GL+
Sbjct: 482 GRIEL-SAWAEAGQACVSVRDNGIG---IAPEQLPRLFEMFSQVDRRHSGAQSGLGIGLS 537
Query: 570 VARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
+A+ L +G VRV S A LG G+ + LP AP
Sbjct: 538 LAQRLAGMHGGSVRVHS-----AGLGC-GSEFTVRLPLLAP 572
>gi|443324923|ref|ZP_21053644.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
gi|442795482|gb|ELS04848.1| signal transduction histidine kinase [Xenococcus sp. PCC 7305]
Length = 436
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 283 NICRSLAMAYVMDQKSMLLQQS--------SWQNNARMSNLVEQIRGPLSSIQTLSKMLS 334
+I +SLA+A ++++S ++ +W+ + R +L+ Q+R PL++++T SK+L
Sbjct: 145 DIAQSLAIARFLERQSQWYREQLSKQENLFNWEQD-RTDDLLHQLRNPLTALRTFSKLLL 203
Query: 335 LHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365
+ + I + I+ + D L LQ+ +
Sbjct: 204 KRFVSNSREHSIADSILRESDHLANLLQQFE 234
>gi|443287741|ref|ZP_21026836.1| Two-component signal transduction histidine kinase [Micromonospora
lupini str. Lupac 08]
gi|385884759|emb|CCH19337.1| Two-component signal transduction histidine kinase [Micromonospora
lupini str. Lupac 08]
Length = 649
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+RP ++ DVL + ++ R A ++EL+ ++ +V ++ LRQ + NLI A+
Sbjct: 462 LRPTDLRDVLTHVVDSHRGSAFAAGVRLELT-VAGDPVVRADQARLRQVIGNLISNAIRH 520
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
T GG V V A P + + D G + L + + +T
Sbjct: 521 TPPGGSV-TVDANGPT----ISVRDTGTGIGPT--DLPKIFDRFWRADESRSRVTGGSGL 573
Query: 567 GLTVARELLESYGCVVRVIS 586
GL +AR L E++G + V S
Sbjct: 574 GLAIARHLTEAHGGTIEVES 593
>gi|423014855|ref|ZP_17005576.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans AXX-A]
gi|338782105|gb|EGP46482.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter xylosoxidans AXX-A]
Length = 466
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A+ + +P AP P +++++ + + P A +Q + L + ++V
Sbjct: 288 ARAKDASLPEAGFAP------EPVDLAELAHAVIRGLLPTARARQLDIGLDAETGPVVVN 341
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ LR+A+SNL++ A+ T GG V + P G A + ++DDGP M
Sbjct: 342 GADWLLREAVSNLVDNAIRYTAPGGMVTVQVRNLP-GQAWLTVEDDGPGM 390
>gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase
[Methylocystis sp. ATCC 49242]
gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase
[Methylocystis sp. ATCC 49242]
Length = 511
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 470 QQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527
Q+R + + E+ + L + +E A+RQ + NL+ A+ T GG+V I AG +
Sbjct: 358 QKRDIRMIEVVEPSLPRIWADERAVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYI 417
Query: 528 VIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
I D+GP + + ++ FG + ++ ++ GL + + L+E +G
Sbjct: 418 AIKDNGPGIPEDEIAVVMSSFGRGMLAQKNADEGTG----LGLPIVKGLVELHG 467
>gi|397905171|ref|ZP_10506042.1| Phosphate regulon sensor protein PhoR (SphS) [Caloramator
australicus RC3]
gi|397161820|emb|CCJ33376.1| Phosphate regulon sensor protein PhoR (SphS) [Caloramator
australicus RC3]
Length = 572
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
NV ++L ++ ++PLA + ++ L + + + V + +Q L NL++ A+ T
Sbjct: 424 KLNVIEILEEIKYIMKPLAESKNIEIYLEKECEDIYVHGDRDKFKQMLINLLDNAIKYTN 483
Query: 509 VGGKVEIVSAAAPAGDALVVIDD 531
GGKV+I+ + + VID+
Sbjct: 484 EGGKVKIILEKSTNEVIISVIDN 506
>gi|344209283|ref|YP_004794424.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia JV3]
gi|343780645|gb|AEM53198.1| integral membrane sensor signal transduction histidine kinase
[Stenotrophomonas maltophilia JV3]
Length = 467
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTNTGGRVRVQAARIPAGVQLIVED 398
>gi|237786492|ref|YP_002907197.1| two-component system sensor kinase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237759404|gb|ACR18654.1| two-component system, sensor kinase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 375
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVVDDG 299
Query: 534 ----PD-MHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
PD + Y+ + + GLT+++ L+E++G + SP
Sbjct: 300 DGIPPDQLRYIF-------ERFYRGDAARSRDDGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|333984936|ref|YP_004514146.1| integral membrane sensor signal transduction histidine kinase
[Methylomonas methanica MC09]
gi|333808977|gb|AEG01647.1| integral membrane sensor signal transduction histidine kinase
[Methylomonas methanica MC09]
Length = 435
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFG 547
+ R+ + NL+E AL + GG+ I V+ G + + D GP + H PF
Sbjct: 329 SFRRCIGNLLENAL---RYGGEGNIHVARRCINGSIFIGVRDRGPGIPAHLAEQVFRPF- 384
Query: 548 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
+ + +T GL +AR+L E+ G + + S W+ GGT V L + S
Sbjct: 385 ---YRLESSRNRITGGSGLGLAIARQLAETQGWKIAIKSRWR-------GGTSVWLQITS 434
Query: 608 P 608
P
Sbjct: 435 P 435
>gi|160900344|ref|YP_001565926.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
acidovorans SPH-1]
gi|333913582|ref|YP_004487314.1| PAS/PAC sensor signal transduction histidine kinase [Delftia sp.
Cs1-4]
gi|160365928|gb|ABX37541.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
acidovorans SPH-1]
gi|333743782|gb|AEF88959.1| PAS/PAC sensor signal transduction histidine kinase [Delftia sp.
Cs1-4]
Length = 464
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 479 LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538
L+Q+ VA L+ A SNL+ A+ T GG++E+ + P G A + D GP +
Sbjct: 323 LAQAGEVAGASAELQSAFSNLLANAMRYTPAGGRIEVTWESLPDGSARFAVQDSGPGIE- 381
Query: 539 MMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
L + + T GL + + +L+ +G + + S
Sbjct: 382 -PKHLARLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHGAKLGITS 428
>gi|427402226|ref|ZP_18893298.1| hypothetical protein HMPREF9710_02894 [Massilia timonae CCUG 45783]
gi|425718999|gb|EKU81940.1| hypothetical protein HMPREF9710_02894 [Massilia timonae CCUG 45783]
Length = 562
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 5/137 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+R DV+ D E VRPL + ++ + +V + L Q ++NL+ A
Sbjct: 266 LRELEFKDVIADAVEQVRPLIEKHRHRLTVDLPPARAIVVGDRKRLVQVMTNLLSNAAKY 325
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE-DNMTWNFV 565
T GG +E V G V I DDG M L +LF++ D
Sbjct: 326 TLEGGHIE-VRLTTDGGALAVDIRDDGIGMS---PDLIASAFDLFAQGARGLDRSQGGLG 381
Query: 566 AGLTVARELLESYGCVV 582
GL + R LL+ +G V
Sbjct: 382 IGLALVRSLLKLHGGAV 398
>gi|395762672|ref|ZP_10443341.1| sensory histidine kinase in two-component regulatory system with
QseB, regulates flagella and motility by quorum sensing
[Janthinobacterium lividum PAMC 25724]
Length = 437
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+E + S+ + V + L+ L+NLI+ AL TQ GG+V++ AA G ++ + D+G
Sbjct: 314 LESASASRPVQVQADPDGLQVLLNNLIDNALRYTQQGGRVDL-QAALEEGRPVLRVSDNG 372
Query: 534 PDMHYMMHSLTPFGSELFSENMVED-NMTWNFVAGLTVARELLESYGCVVRVISPWKTDA 592
P + H + LF D N W GL++ R + E + + + +DA
Sbjct: 373 PGVPRQHH------ARLFDRFFRPDGNDAWGCGLGLSIVRHIAEHHQADIAL-----SDA 421
Query: 593 ALGSG 597
G G
Sbjct: 422 QAGRG 426
>gi|145224469|ref|YP_001135147.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium gilvum PYR-GCK]
gi|315444805|ref|YP_004077684.1| histidine kinase [Mycobacterium gilvum Spyr1]
gi|145216955|gb|ABP46359.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium gilvum PYR-GCK]
gi|315263108|gb|ADT99849.1| histidine kinase [Mycobacterium gilvum Spyr1]
Length = 380
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSL 543
L+ +E L Q L NL++ AL T GG+VEI + + DDG + L
Sbjct: 263 LLRADEQRLSQVLDNLLDNALRHTARGGRVEI-HCHTEGARVRIAVTDDGEGI--AAEHL 319
Query: 544 TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVE 602
+ + + D GL +A+ L+E++G V T A+ G+G G
Sbjct: 320 SSVFERFYRADAARDREHGGAGLGLAIAKALVEAHGGSV-------TAASDGAGTGATFT 372
Query: 603 LWLPSPAP 610
+ LP+ P
Sbjct: 373 VELPTTRP 380
>gi|440713478|ref|ZP_20894079.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
baltica SWK14]
gi|436441944|gb|ELP35136.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopirellula
baltica SWK14]
Length = 232
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQ 494
L A L+ + P +++D + + +A + A Q VEL L + + AL+
Sbjct: 73 LRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQD--VELQRYLDPDLPSIRLHSDALQS 130
Query: 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMMHSLTPFGSELFSE 553
AL NL++ AL GG++ + + G L +ID G D + ++H PF S
Sbjct: 131 ALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVLHMFEPFYS----- 185
Query: 554 NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLS 612
+D + GL AR+++E++G + V S GT+ L P PA L
Sbjct: 186 --TKDGGSG---LGLPTARKIIEAHGARISVQSETGR-------GTKFSLQFPVPARLG 232
>gi|386392731|ref|ZP_10077512.1| signal transduction histidine kinase, nitrogen specific
[Desulfovibrio sp. U5L]
gi|385733609|gb|EIG53807.1| signal transduction histidine kinase, nitrogen specific
[Desulfovibrio sp. U5L]
Length = 616
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 31/178 (17%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP +++D+ RP A + V+L+E + + + L QAL NL A+
Sbjct: 454 RPVSLADLAAHAARLTRPDATARGVAVDLAEAAGGPEIPADPDRLTQALLNLCLNAIQSM 513
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG----PDMHYMM----HSLTPFGSELFSENMVEDN 559
GG + + + AP G A + + D G P+ + ++ P G+ L
Sbjct: 514 GAGGVMRLATGTAPDGRAFISVADTGSGIDPEERDRIFDPYYTTKPHGTGL--------- 564
Query: 560 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGK 617
GL +A +++ ++G +R+ A GGT ++LP+ A ++L K
Sbjct: 565 -------GLPIAHKIVVAHGGEIRL-------ARRPEGGTMATVYLPTAAGTTNLGDK 608
>gi|386720365|ref|YP_006186691.1| sensory histidine kinase [Stenotrophomonas maltophilia D457]
gi|384079927|emb|CCH14530.1| Sensory histidine kinase [Stenotrophomonas maltophilia D457]
Length = 463
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHGGGRVRVQAARVPAGVQLIVED 394
>gi|384214836|ref|YP_005606000.1| phosphate regulon, two-component sensor histidine kinase
[Bradyrhizobium japonicum USDA 6]
gi|354953733|dbj|BAL06412.1| phosphate regulon, two-component sensor histidine kinase
[Bradyrhizobium japonicum USDA 6]
Length = 432
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L +F+ + PLA +Q +VE +++A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIFQVADGLEPLARERQVEVETHLPETPVMIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL----VVIDDDGPDM 536
L GG+V + AAA A D V++ D GP +
Sbjct: 327 LKYGASGGRVIVSLAAAAATDGTQEIRVMVRDFGPGI 363
>gi|251797174|ref|YP_003011905.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
sp. JDR-2]
gi|247544800|gb|ACT01819.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
sp. JDR-2]
Length = 549
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 23/161 (14%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
NV DV+ E + P + + V + L+Q NL++ A+
Sbjct: 397 VNVKDVIEQTLEFLTPQTLLNNIEFIREYEGDYFPVTCAKHQLKQVFLNLLKNAIESMSN 456
Query: 510 GGKVEIVSAAAPAGDALVVIDDDG---PDMHYMMHSL-TPFGSELFSENMVEDNMTWNFV 565
GG++ I AG+ L+ I D G P+ H +H L PF S +++ T
Sbjct: 457 GGEIHISIQLDAAGECLIFIQDQGCGIPEEH--LHRLGQPFYS-------LKEKGTG--- 504
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL ++ ++++ Y R++ K D GTR+E+ LP
Sbjct: 505 LGLMISHKIIKQYHG--RIVYDSKVDI-----GTRIEIRLP 538
>gi|398964197|ref|ZP_10680144.1| signal transduction histidine kinase [Pseudomonas sp. GM30]
gi|398148772|gb|EJM37440.1| signal transduction histidine kinase [Pseudomonas sp. GM30]
Length = 461
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 20/147 (13%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ R+ L ++ + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRTTLESSAQSTDRLTHLANQLLSLARVENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++S + +L A+ PLAH R V L+ E + + + E L + LSNL++ AL T
Sbjct: 322 DLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLVDNALAHTPP 379
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG V I+ AAP A++ ++DDGP +
Sbjct: 380 GGNV-ILRVAAP---AVLEVEDDGPGI 402
>gi|389685266|ref|ZP_10176590.1| sensor histidine kinase [Pseudomonas chlororaphis O6]
gi|388550919|gb|EIM14188.1| sensor histidine kinase [Pseudomonas chlororaphis O6]
Length = 461
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ RS L + + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRSTLESAAQGTDRLTHLANQLLSLARIENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++S + +L A+ PLAH + + L E + + + E L + LSNL++ AL T+ G
Sbjct: 322 DLSQLARELGMAMAPLAHARGIALAL-EADEPVWLRGEPTLLNELLSNLVDNALAHTRPG 380
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM 536
G V I+ +AP A++ ++DDGP +
Sbjct: 381 GNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|227502287|ref|ZP_03932336.1| two-component system sensor kinase [Corynebacterium accolens ATCC
49725]
gi|227076977|gb|EEI14940.1| two-component system sensor kinase [Corynebacterium accolens ATCC
49725]
Length = 375
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQIETITHTARALVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 ----PD-MHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
PD + Y+ + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPDQLRYIF-------ERFYRGDAARSRDDGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|150391004|ref|YP_001321053.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
gi|149950866|gb|ABR49394.1| integral membrane sensor signal transduction histidine kinase
[Alkaliphilus metalliredigens QYMF]
Length = 458
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I N++ +L +L R A Q +ELS ++ + + + L+QAL N+I +
Sbjct: 304 IEKINLNRLLDELVMITRKFAEQQDVAIELSNMNDAYEIEGDSDKLKQALINIILNGIQA 363
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDG 533
+ GG++EI ++++ D+G
Sbjct: 364 MEQGGRLEISLKKTEKEESVITFKDEG 390
>gi|188581323|ref|YP_001924768.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacterium populi BJ001]
gi|179344821|gb|ACB80233.1| response regulator receiver sensor signal transduction histidine
kinase [Methylobacterium populi BJ001]
Length = 613
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ + ++ EA RPLA + +++ +++L+ L + + LR+AL NL+ A+ +
Sbjct: 459 PVDLAGLAREVCEANRPLAESKGQRL-ITDLAGPLQLCGDAERLREALDNLVSNAIKYSY 517
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM----------HYMMHSLTPFGSE 549
GG + V A AGD + + D GP + Y S P G E
Sbjct: 518 PGGTI-TVRVRAEAGDYVCAVADQGPGLSPEDAGRLFGRYQRLSAKPTGGE 567
>gi|296447262|ref|ZP_06889191.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
gi|296255224|gb|EFH02322.1| integral membrane sensor signal transduction histidine kinase
[Methylosinus trichosporium OB3b]
Length = 514
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 470 QQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527
Q+R +E+ E+++ L + +E A+RQ + NL+ A+ T GG+V + AG V
Sbjct: 356 QKRGIEMIEMTEPDLPRLWADERAVRQIVLNLLTNAIKFTPQGGQVTLKVGWTSAGGQYV 415
Query: 528 VIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 585
I D GP + + ++ FG ++ E+ GL + + L++ +G + ++
Sbjct: 416 AIRDTGPGIPEEEIAVVMSSFGRGTLAQKNAEEGTG----LGLPIVKGLIDLHGGLFKLA 471
Query: 586 S 586
S
Sbjct: 472 S 472
>gi|406830661|ref|ZP_11090255.1| chemotaxis CheB/CheR fusion protein [Schlesneria paludicola DSM
18645]
Length = 1476
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 15/147 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + V+G+ E+V P + ++VE Q V + LRQ ++NL+ A +
Sbjct: 1174 PVALDQVIGESVESVMPAFDKRGQKVETMLCQQQAWVDGDLVRLRQIVTNLLSNASRYSS 1233
Query: 509 VGGKVEI---VSAAAPAGDALVVID--DDG----PDMHYMMHSLTPFGSELFSENMVEDN 559
G V++ + AA+ + A+ VI D+G PD+H + PF + N +
Sbjct: 1234 PGKTVKLSLSLEAASRSKPAMAVISVRDEGIGIAPDVHEKI--FEPFAQLRRTHNEASEG 1291
Query: 560 MTWNFVAGLTVARELLESYGCVVRVIS 586
+ GL+++R L E +G V VIS
Sbjct: 1292 LGL----GLSLSRRLAELHGGTVTVIS 1314
>gi|398872626|ref|ZP_10627913.1| signal transduction histidine kinase [Pseudomonas sp. GM74]
gi|398202160|gb|EJM89011.1| signal transduction histidine kinase [Pseudomonas sp. GM74]
Length = 462
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLGGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|119490530|ref|ZP_01622972.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
gi|119453858|gb|EAW35014.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
Length = 419
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQ 508
N+ +L DL + LA + Q + L++L QS+L+ E LRQA+ NL+ A T
Sbjct: 269 VNIVQILTDLATFYQDLA-LDQNFIFLTQLPQQSILIRAEPELLRQAIENLLNNAFKYTN 327
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
GG + + + ++ + D G M L + + T F GL
Sbjct: 328 SGGTISL-KLIYESRWVMITVTDTG--MGIPPKDLPHIFDRFYRVDQARTRKTGGFGLGL 384
Query: 569 TVARELLESYGCVVRVIS 586
+ ++++E++ VR S
Sbjct: 385 AIVKQIVEAHQGYVRATS 402
>gi|120556439|ref|YP_960790.1| integral membrane sensor signal transduction histidine kinase
[Marinobacter aquaeolei VT8]
gi|120326288|gb|ABM20603.1| integral membrane sensor signal transduction histidine kinase
[Marinobacter aquaeolei VT8]
Length = 449
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+++D++ + E R + EL E Q+ + AL QA+ N++ A T G
Sbjct: 301 DLTDLVDTIAEDARYEYPEHHIRTELPE--QAEIRGTSHRALAQAIENVVRNACKYTPAG 358
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
G V ++ AG + ++DDGP + + PF F + +++ GL
Sbjct: 359 GTV-MIRLQEEAGGYRLSVEDDGPGVPAEQLEAIFRPF----FRATRIRESVPSGHGLGL 413
Query: 569 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
+A L++ G +R + G+GG + LWLP+
Sbjct: 414 ALASRHLDAIGGRIRACN------LAGNGGLAMHLWLPA 446
>gi|358637111|dbj|BAL24408.1| hypothetical protein AZKH_2095 [Azoarcus sp. KH32C]
Length = 702
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGK 512
SD++ D V PLA + ++E S Q L V + L+Q + NL+ A+ + GG
Sbjct: 524 SDLIADCIGMVSPLAQRNEVKIE-SSGDQGLAVEADHQFLKQIVLNLLSNAIKYNRQGGL 582
Query: 513 VEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTV 570
V + S G +++ D G + PF +E + GL V
Sbjct: 583 VRVHSELDANGHLRIMVSDTGQGIAPEQQAQLFEPFNRLGAQNGSIEGSGI-----GLVV 637
Query: 571 ARELLESYGCVVRVIS 586
+ L+E+ G + V+S
Sbjct: 638 CKRLVEAMGGDIHVVS 653
>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus fervens AG86]
gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus fervens AG86]
Length = 632
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 20/164 (12%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
I+ + D++ D+ ++ P ++++ +E+ E+ ++L V++ + Q L NLIE A+
Sbjct: 483 IKDVKIKDMVVDVLNSLGP--QIKEKNIEIKCEIEENLTAKVDKDRITQVLINLIENAIK 540
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSEN---MVEDNMTW 562
+ V G +EI A A ++I D GP + L + + N + +D
Sbjct: 541 FSPVKGVIEI-HAFRDNNYAHIIIKDYGPGIP--KKDLDKIFDKFYQVNFPKIKKDGAGL 597
Query: 563 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL + + ++E++G + W ++ LG GT + LP
Sbjct: 598 ----GLAICKSIIEAHGGKI-----W-VESELGK-GTSFHVLLP 630
>gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
Length = 1156
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ D + + E+ RP + +++ + L +EL + V ++ + + NL+
Sbjct: 581 QPSFRPCDLVDFVSQIVESFRP--YCEKKALHLTTELDECPTVYIDMEKFDKVVYNLLSN 638
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTW 562
A+ T GG + V + ++ + D G ++ P E F + +N ++
Sbjct: 639 AMKFTPEGGTIS-VKLQSQGHHCILQVQDTGIG---IVKEQIPHLFERFRQAEGSENRSY 694
Query: 563 NFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
GL + +EL+E +G V V S + GT LWL
Sbjct: 695 EGSGLGLALVKELVELHGGRVTVESVY-------GKGTTFTLWL 731
>gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus marinus MC-1]
Length = 1041
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 19/176 (10%)
Query: 415 QNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR----PCNVSDVLGDLFEAVRPLAHMQ 470
Q C + +E+ L LA +++N I P +V +V+ + V P+A+
Sbjct: 707 QRECTREIIQAGGHLLELINDVLDLAKIEENRISLKMAPVHVQEVIREAVALVTPMAN-- 764
Query: 471 QRQVELSE-----LSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525
++ + L + + V + L+Q L NL + + GG+VEI A AG A
Sbjct: 765 RKGIRLYHGMGEGVCERCDVQADRTRLKQILINLATNGVKYNREGGEVEISCRLAEAGRA 824
Query: 526 LVVIDDDGPDMHYMMHS--LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
+ + D G + + PF +VED GL++ + L+E+ G
Sbjct: 825 RIEVRDTGIGIAALKQGDIFEPF------HRLVEDGTIEGTGIGLSIVKRLVEAMG 874
>gi|453378873|dbj|GAC86233.1| putative two-component histidine kinase [Gordonia paraffinivorans
NBRC 108238]
Length = 384
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ + +S+ V V+ Q L NL++ AL T GG V I A A +V+ D G +
Sbjct: 256 TRIDRSVPVTVDPDRFGQVLGNLLDNALRHTPDGGTVTITCQQAGPTHAEIVVADTGEGI 315
Query: 537 --HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
++ H F + ++ + GLT+ R L+E++G +R S
Sbjct: 316 AAEHLDHLFDRF----YRADLARNRRHGGSGIGLTITRALVEAHGGRIRAAS 363
>gi|451945603|ref|YP_007466238.1| two-component system sensor protein [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
gi|451904990|gb|AGF73876.1| two-component system sensor protein [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
Length = 371
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
QVE + + ++V + Q + NL+ AL T GG+V I +A + L+ + D
Sbjct: 241 QVEAATATARIIV--DRQRFGQVMGNLLTNALRHTPPGGQVRISAAQQGSDTVLIDVADT 298
Query: 533 GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
G M L+ + + + T GLT++R L+E++G + SP
Sbjct: 299 GDGM--TTEQLSHIFERFYRGDTARNRDTGGAGIGLTISRALVEAHGGTLTATSP 351
>gi|153811669|ref|ZP_01964337.1| hypothetical protein RUMOBE_02061 [Ruminococcus obeum ATCC 29174]
gi|149832410|gb|EDM87495.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Ruminococcus obeum ATCC 29174]
Length = 402
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 22/155 (14%)
Query: 471 QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI---------VSAAAP 521
Q++VEL + V L +A+ NL+E A+ GGKV + V+ + P
Sbjct: 259 QKKVELIQEEGDCTVTGSYLLLYRAVYNLVENAIKYNHSGGKVTVKISQTKALPVAHSKP 318
Query: 522 AGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
A ALV + D G + Y PF F + GL + E+ +G
Sbjct: 319 ADYALVEVTDTGIGISPEYQEKIFAPF----FRVDKSRSRAMGGAGLGLALVAEIARQHG 374
Query: 580 CVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL 614
V+V++ K G+ + L LP +PL ++
Sbjct: 375 GQVKVLASSKK-------GSTIALMLPINSPLIEI 402
>gi|289704827|ref|ZP_06501245.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Micrococcus luteus SK58]
gi|289558443|gb|EFD51716.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Micrococcus luteus SK58]
Length = 380
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMM 540
L V V+ + Q L NL+ AL T GG+V + + +P+G L V D +G ++
Sbjct: 250 GLAVDVDRQRMGQVLGNLLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLP 309
Query: 541 HSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
H F + + D GL ++R L++++G + S
Sbjct: 310 HVFERF----YRGDTARDRDHGGSGVGLAISRALIQTHGGTLSATS 351
>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
Length = 1209
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P + +++ EA R +EL+ + V V+ + Q ++NLI A+
Sbjct: 790 FQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKF 849
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
+ GGKVE+ P G + + D GP + F +F + D+
Sbjct: 850 SPPGGKVEVAIGREPRGRIRITVTDHGPGIP------VEFRDRIFQKFAQADSSNTRRQG 903
Query: 567 ----GLTVARELLESYGCVVRVIS 586
GL+++R ++E +G + ++
Sbjct: 904 GTGLGLSISRAIVERHGGQIGFVT 927
>gi|387815818|ref|YP_005431311.1| sensor of the two component response regulator ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal, partial [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381340841|emb|CCG96888.1| putative sensor of the two component response regulator ATP-binding
region, ATPase-like:Histidine kinase, HAMP
region:Histidine kinase A, N-terminal precursor
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 445
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 15/159 (9%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+++D++ + E R + EL E Q+ + AL QA+ N++ A T G
Sbjct: 297 DLTDLVDTIAEDARYEYPEHHIRTELPE--QAEIRGTSHRALAQAIENVVRNACKYTPAG 354
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
G V ++ AG + ++DDGP + + PF F + +++ GL
Sbjct: 355 GTV-MIRLQEEAGGYRLSVEDDGPGVPAEQLEAIFRPF----FRATRIRESVPSGHGLGL 409
Query: 569 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
+A L++ G +R + G+GG + LWLP+
Sbjct: 410 ALASRHLDAIGGRIRACN------LAGNGGLAMHLWLPA 442
>gi|358636356|dbj|BAL23653.1| sensory box sensor histidine kinase [Azoarcus sp. KH32C]
Length = 388
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 28/175 (16%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS---ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+ D++G+L + PLA + RQ+ S E + L+ + AL AL+NL+E A+ T
Sbjct: 234 GICDLVGELVHTLEPLA--RARQIVFSSTCECGDTALLG-DRKALGGALTNLLENAIQAT 290
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMHSLTPFGSELFSENMVEDNMTWNFV 565
+ GG V + +AA A I D+G + + PF F+ +
Sbjct: 291 EAGGAVSL-TAAVEGETAHFRIRDNGRGIESAHQARLFDPF----FTTRAEGTGL----- 340
Query: 566 AGLTVARELLESYGCVVRV-ISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSN 619
GL +AR + +G + V SP G+ L LP P D+ GK +
Sbjct: 341 -GLAIARGVARGHGGDIAVESSPGN--------GSLFTLSLPLPEADEDVTGKDS 386
>gi|325289366|ref|YP_004265547.1| integral membrane sensor signal transduction histidine kinase
[Syntrophobotulus glycolicus DSM 8271]
gi|324964767|gb|ADY55546.1| integral membrane sensor signal transduction histidine kinase
[Syntrophobotulus glycolicus DSM 8271]
Length = 350
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 20/160 (12%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
N++D+ D+ A +Q+ + LS + + + L +A+SN+++ AL T G
Sbjct: 198 NIADMAKDIRRHFAFRAGGEQKTIILSG-PDHIGLFCDRVWLTEAISNIVKNALDHTDTG 256
Query: 511 GKVEIVSAAAPAGDALVVIDDDG----PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
G++ I PA + V D+ D+H++ + S F + T
Sbjct: 257 GQIVIEWKGLPAITQITVRDNGSGIHPEDIHHIFKRF--YRSRFFKD-------TQGIGL 307
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL +A+ ++E++G + D+ALG G V +LP
Sbjct: 308 GLPLAKAIVEAHGGSI------TADSALGKGSAFVMSFLP 341
>gi|160903064|ref|YP_001568645.1| PAS/PAC sensor signal transduction histidine kinase [Petrotoga
mobilis SJ95]
gi|160360708|gb|ABX32322.1| PAS/PAC sensor signal transduction histidine kinase [Petrotoga
mobilis SJ95]
Length = 929
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
K N I N+ +++ + + V L + +L+ V++ ++Q L NLI+
Sbjct: 776 KINQIEEVNLIEIIRGIILMYEDFIQQKHVMVNTDWLKEEILIKVDKDKIKQVLMNLIKN 835
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
AL GK++I I +DGP
Sbjct: 836 ALESVNNNGKIDIKVGFTAENKVFFEITNDGP 867
>gi|17232455|ref|NP_489003.1| adenylate cyclase [Nostoc sp. PCC 7120]
gi|17134101|dbj|BAB76662.1| adenylate cyclase carring two-component hybrid sensor and regulator
domains [Nostoc sp. PCC 7120]
Length = 1155
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 15/164 (9%)
Query: 444 QNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEG 502
Q RPC++ D + + E+ RP + +++ + L +EL + V ++ + + NL+
Sbjct: 581 QPSFRPCDLVDFVSQIVESFRP--YCEKKALHLTTELDECPTVYIDMEKFDKVVYNLLSN 638
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTW 562
A+ T GG + V + ++ + D G ++ P E F + +N ++
Sbjct: 639 AMKFTPEGGTIS-VKLQSQGHHCILQVQDTGIG---IVKEQIPHLFERFRQAEGSENRSY 694
Query: 563 NFVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
GL + +EL+E +G V V S + GT LWL
Sbjct: 695 EGSGLGLALVKELVELHGGRVTVESVY-------GKGTTFTLWL 731
>gi|427402472|ref|ZP_18893469.1| hypothetical protein HMPREF9710_03065 [Massilia timonae CCUG 45783]
gi|425718278|gb|EKU81225.1| hypothetical protein HMPREF9710_03065 [Massilia timonae CCUG 45783]
Length = 717
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R +V DV+ D E RPL +Q + + V + L Q L+NL+ A T
Sbjct: 414 REIDVHDVIADAEEQARPLMEKRQHALRCICRAGKAYVRGDRKRLVQVLANLLNNAAKYT 473
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA- 566
GG +++ D + + D+G M H L +LF++ + + T +
Sbjct: 474 PPGGAIDM-RVEVRERDVAISVSDNGIG---MAHELVGRVFDLFAQGERDADRTQGGLGI 529
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAP 610
GL + R L+E +G V S G+G G+R + LP P
Sbjct: 530 GLALVRNLVELHGGSVGAHSA-------GAGQGSRFTVTLPRIEP 567
>gi|306834848|ref|ZP_07467909.1| two component system sensor kinase [Corynebacterium accolens ATCC
49726]
gi|304569272|gb|EFM44776.1| two component system sensor kinase [Corynebacterium accolens ATCC
49726]
Length = 375
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASAALIHVADDG 299
Query: 534 ----PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
PD + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPDQ--LGHIFERF----YRGDAARSRDDAGAGIGLTISKALIEAHGGTLTATSP 351
>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 1209
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 10/144 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P + +++ EA R +EL+ + V V+ + Q ++NLI A+
Sbjct: 790 FQPVVLDELVRQTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKF 849
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
+ GGKVE+ P G + + D GP + F +F + D+
Sbjct: 850 SPPGGKVEVAIGREPRGRIRITVTDHGPGIP------VEFRDRIFQKFAQADSSNTRRQG 903
Query: 567 ----GLTVARELLESYGCVVRVIS 586
GL+++R ++E +G + ++
Sbjct: 904 GTGLGLSISRAIVERHGGQIGFVT 927
>gi|260778335|ref|ZP_05887228.1| probable two-component system sensor histidine kinase (Pho family)
[Vibrio coralliilyticus ATCC BAA-450]
gi|260606348|gb|EEX32633.1| probable two-component system sensor histidine kinase (Pho family)
[Vibrio coralliilyticus ATCC BAA-450]
Length = 467
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIE 501
+Q NVS+VL + +A +Q++L ++ L+ +P L QAL NL++
Sbjct: 309 RQQQSTSTNVSEVLKTVVSWYEDVA--DDKQIQLQAIADDNLIIQSDPEKLTQALVNLVD 366
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
A+ T+ GGKV + + +++ D G + L L+ + N+
Sbjct: 367 NAIKYTETGGKVSLKADKTSDHHVQILVSDTGIGIDKQYQDL--IFERLYRVDASRSNIE 424
Query: 562 WNFVAGLTVARELLESYGCVVRVIS 586
+ GL++A ++++ G ++++S
Sbjct: 425 -GYGLGLSLAAAMVDNLGGNIQLVS 448
>gi|418054981|ref|ZP_12693036.1| integral membrane sensor signal transduction histidine kinase
[Hyphomicrobium denitrificans 1NES1]
gi|353210563|gb|EHB75964.1| integral membrane sensor signal transduction histidine kinase
[Hyphomicrobium denitrificans 1NES1]
Length = 444
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 487 VEEPALRQALSNLIEGA--LMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM-HYMMHSL 543
+E+ L + L NL+E A RTQ+ ++E+V GD V IDDDGP + M ++
Sbjct: 347 MEKTDLAEVLGNLLENAARYARTQI--RIEMV------GDGRVAIDDDGPGIPEAMKAAV 398
Query: 544 TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
G L D + GL + +E+LE+YG
Sbjct: 399 LVRGQRL-------DQSSGGTGLGLAIVQEVLEAYG 427
>gi|239918316|ref|YP_002957874.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665]
gi|281415487|ref|ZP_06247229.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665]
gi|239839523|gb|ACS31320.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665]
Length = 389
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMM 540
L V V+ + Q L NL+ AL T GG+V + + +P+G L V D +G ++
Sbjct: 250 GLAVDVDRQRMGQVLGNLLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLP 309
Query: 541 HSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
H F + + D GL ++R L++++G + S
Sbjct: 310 HVFERF----YRGDTARDRDHGGSGVGLAISRALIQTHGGTLSATS 351
>gi|428221709|ref|YP_007105879.1| histidine kinase [Synechococcus sp. PCC 7502]
gi|427995049|gb|AFY73744.1| histidine kinase [Synechococcus sp. PCC 7502]
Length = 425
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNL 499
PLK N C++S +L ++ E + +A Q +E+ + V + L + +NL
Sbjct: 267 TPLKVNDQNHCDLSQILSNVVEEQQIIAQNQNITIEVLSADVPVTVLGDRSQLVRLFTNL 326
Query: 500 IEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
I A+ T GGKV + A + A + I D G
Sbjct: 327 ISNAINYTLAGGKVTVSLATINSHQAQIEITDTG 360
>gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 454
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 23/160 (14%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALR-------QALSNLIEGALMRTQVG 510
D E VR A + + + +S + ++++A P +R Q L NL AL T G
Sbjct: 303 DPTELVRAAARLLEHKSVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNALKFTPTG 362
Query: 511 GKVEIVSAAAPAGDALVVIDDD---GPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GKV I + P G ALVV D P+ H + S + G
Sbjct: 363 GKVGICATLVPDGLALVVSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGL------G 416
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
L + R +E++G V + D+A G GTR+ + LP+
Sbjct: 417 LAIVRHFVEAHGGTVSL------DSAPGQ-GTRITVLLPT 449
>gi|425446294|ref|ZP_18826302.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9443]
gi|389733523|emb|CCI02707.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9443]
Length = 418
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + I+ + DR+R + E + +
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEGQI 219
>gi|383452936|ref|YP_005366925.1| sensor histidine kinase [Corallococcus coralloides DSM 2259]
gi|380732530|gb|AFE08532.1| sensor histidine kinase [Corallococcus coralloides DSM 2259]
Length = 437
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFG 547
+ P LRQ L NL++ A GG+VE+ A G A V + D GP +TP
Sbjct: 324 QAPRLRQVLLNLVKNAAEAAGEGGRVEVRIAVDADGSARVAVSDSGP-------GVTPEA 376
Query: 548 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS-GGTRVELWLP 606
E + + GL V++ + E++G + D G+ GG R L LP
Sbjct: 377 RARLFEPFFTTKPSGTGL-GLAVSQAIAEAHGG--------RIDVDTGALGGARFTLSLP 427
Query: 607 SPAPLSD 613
SP+ + +
Sbjct: 428 SPSRVQE 434
>gi|325961693|ref|YP_004239599.1| signal transduction histidine kinase [Arthrobacter
phenanthrenivorans Sphe3]
gi|323467780|gb|ADX71465.1| signal transduction histidine kinase [Arthrobacter
phenanthrenivorans Sphe3]
Length = 547
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P + L + A+RPLA +Q + + + + + +E L+Q +NL+ A+
Sbjct: 384 LTPVRLGQTLDLVAAALRPLATLQNVTIAVEPVPEDPEILADEVQLQQVFTNLVSNAIKF 443
Query: 507 TQVGGKVEIVSAAAPAGD----ALVVIDDDGPDMHY--MMHSLTPFGSELFSENMVEDNM 560
T GG++E+ S + A D A V + D G + + H T F + N + +
Sbjct: 444 TPSGGRIEVGSESHAAADGTRWATVSVADTGIGISSDEIHHVFTRF---YRASNAMAGAI 500
Query: 561 TWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
+ GL + ++++ +G + V S LGS GT V + LP
Sbjct: 501 PGTGL-GLAITKDIVSRHGGRIDVSS------TLGS-GTTVTVSLP 538
>gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis sp.
HTCC2633]
gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis
alexandrii HTCC2633]
Length = 624
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 13/175 (7%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMR 506
RP SDV+ + +A P A + + LS+ + S + V+ +RQ LSNL+ A+
Sbjct: 313 RPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRVRQILSNLLGNAIKF 372
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
T+ G+V + + G V + D GP M + FG +M
Sbjct: 373 TET-GEVRVDALWTETGRIRVEVHDTGPGMSETVQKRV-FG-RFEQADMSHSRSHEGSGL 429
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNGKSNET 621
GL +AREL+ G + V S G G W PA +DL+ + ET
Sbjct: 430 GLAIARELVVLMGGQIGVHS------RPGQGAC---FWFEFPARPADLDDEPQET 475
>gi|408822484|ref|ZP_11207374.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas geniculata N1]
Length = 467
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 351 LQVSGDERRLQQVLANLLENALRYTHAGGRVLVQAAHVPAGVQLIVED 398
>gi|333894786|ref|YP_004468661.1| sensor signal transduction histidine kinase [Alteromonas sp. SN2]
gi|332994804|gb|AEF04859.1| periplasmic sensor signal transduction histidine kinase
[Alteromonas sp. SN2]
Length = 464
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPF-- 546
AL QA+ N+I AL T +VE++ ++ G L V D+GP + H + PF
Sbjct: 339 ALGQAIENIIRNALRHTPEKSEVEVLLSSTEKGYRLCV-KDNGPGVPEHMLGDIFKPFFR 397
Query: 547 --GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
+ + ++ + + F GL +A +E+ G ++ + TD A G ++++
Sbjct: 398 VDKARVSKGERIDTSQSTGFGLGLALAHRQIEAVGGTIKAQN--YTDVAGQRSGLKIQIE 455
Query: 605 LPSPA 609
LPS +
Sbjct: 456 LPSSS 460
>gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 1207
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++P + +++ EA R Q+EL+ + V V+ + Q ++NLI A+
Sbjct: 791 MQPVVLDELVRQTIEANRGFGQQYNVQIELTATLPGVQVYVDPDRMTQVITNLISNAVKF 850
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNF 564
+ G KVE+ P G + + D GP + + F ++ S N + T
Sbjct: 851 SPPGCKVEVAIGREPQGRVRITVTDHGPGIPPEFRDRIFQKF-AQADSSNTRQQGGTG-- 907
Query: 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
GL+++R ++E +G + ++ A G G T
Sbjct: 908 -LGLSISRAIVERHGGQIGFVT------ATGVGTT 935
>gi|322434292|ref|YP_004216504.1| integral membrane sensor signal transduction histidine kinase
[Granulicella tundricola MP5ACTX9]
gi|321162019|gb|ADW67724.1| integral membrane sensor signal transduction histidine kinase
[Granulicella tundricola MP5ACTX9]
Length = 543
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA------PAGDALVVIDDDGPDM-- 536
V ++ LRQ NLI AL T GG++ + + A+ G VV+ D G M
Sbjct: 423 VNCQDGELRQVFINLISNALEATPAGGRLVVRTRASRDWARRGTGGVRVVVADSGCGMPD 482
Query: 537 HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGS 596
+ PF F+ M N GL VA++L+E G +RV S +G+
Sbjct: 483 AVRVKVFEPF----FTTKMETGNGL-----GLWVAKDLIEKLGGTIRVWS----STRVGA 529
Query: 597 GGTRVELWLP 606
GT ++LP
Sbjct: 530 SGTVFSVFLP 539
>gi|295112251|emb|CBL29001.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
gyrase B-, and HSP90-like ATPase./HAMP domain.
[Synergistetes bacterium SGP1]
Length = 513
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++S L + +A RPL + S L+ SL V+E R + NL+ AL T
Sbjct: 340 PVDLSAFLSSVLDAFRPLFGRTGVALRRS-LAPSLHAEVDEDRFRHVMDNLLSNALRYTP 398
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG VE V +A++ + D G + + H F + + +T
Sbjct: 399 KGGWVE-VRLRRRGDEAVIEVQDSGSGISPQDLPHVFDRF----YRADESRARVTGGRGV 453
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGS 596
GL++AR ++E++G + V ++++ +GS
Sbjct: 454 GLSIARAVVEAHGGTIGV----ESESGVGS 479
>gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase
[Thermosediminibacter oceani DSM 16646]
gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase
[Thermosediminibacter oceani DSM 16646]
Length = 586
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
+ + V P+A ++ + +EL + L+ +E + Q L NLI+ AL T+ GG++ I+ A
Sbjct: 438 VIKKVNPVAEKKRVNIT-AELKELPLIYADEDRMEQVLINLIDNALRYTENGGEI-IIEA 495
Query: 519 AAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF---SENMVEDNMTWNFVAGLTVARELL 575
+A V + D GP + PF E F + DN GL + + ++
Sbjct: 496 SAGTESVTVCVKDRGPGIP---EDELPFIWERFYKVDKARTRDNGGTGI--GLAIVKNII 550
Query: 576 ESYGCVV 582
E++G V
Sbjct: 551 EAHGGKV 557
>gi|254521419|ref|ZP_05133474.1| two-component system sensor kinase [Stenotrophomonas sp. SKA14]
gi|219719010|gb|EED37535.1| two-component system sensor kinase [Stenotrophomonas sp. SKA14]
Length = 463
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID 530
L V+ +E L+Q L+NL+E AL T GG+V + +A PAG L+V D
Sbjct: 347 LQVSGDERRLQQVLANLLENALRYTHAGGRVLVQAARVPAGVQLIVED 394
>gi|434401248|ref|YP_007135076.1| integral membrane sensor signal transduction histidine kinase
[Stanieria cyanosphaera PCC 7437]
gi|428272448|gb|AFZ38386.1| integral membrane sensor signal transduction histidine kinase
[Stanieria cyanosphaera PCC 7437]
Length = 454
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 437 LALAPLKQNG----IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L L L+QN +PC ++D++ DL E + LA + + V E L
Sbjct: 288 LLLVSLEQNSSPKPFQPCCLNDLIADLTEELAELATASNIHLTSQVPHFEIYVLGNESQL 347
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+ +SNLI A+ T GG V+ VS + +A++ I+D G
Sbjct: 348 YRLVSNLIANAIQYTSTGGYVQ-VSLSQSDHNAILAIEDTG 387
>gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510]
gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510]
Length = 593
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+ D L D V LA + + ++ LLV + +RQA+ NL+ A+ T GG
Sbjct: 447 LDDFLTDCLGLVEALALRKGVTLTGDAIAPGLLVTADGVRMRQAVLNLLSNAIKFTPAGG 506
Query: 512 KVEIVSAAAPAGDALVV-IDDDGPDMHY--MMHSLTPFGSELFSENMVEDNMTWNFVA-- 566
V + + A P G V+ + D G M+ M+ ++ PF V + +T
Sbjct: 507 TVRLEATADPDGSGTVITVRDSGIGMNAEEMLIAMEPF-------RQVHNYLTKAEAGTG 559
Query: 567 -GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL +AR +E++G + + D+ G+ GT V + LP
Sbjct: 560 LGLPLARRFVEAHGGTLTL------DSRPGA-GTTVTIRLP 593
>gi|163813914|ref|ZP_02205308.1| hypothetical protein COPEUT_00067 [Coprococcus eutactus ATCC 27759]
gi|158450784|gb|EDP27779.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Coprococcus eutactus ATCC 27759]
Length = 663
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 483 LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS 542
+L ++ + Q + NLI+ AL T+ G ++ VSA GDA++ + D+G + +
Sbjct: 542 ILARMDAQLIVQVIVNLIDNALKYTEQGSEI-CVSAEKQGGDAVIRVTDNG---NGIADD 597
Query: 543 LTPFGSELF--SENMVEDNMTWNFVAGLTVARELLESYG 579
+ P E+F +N V D+ +F GLT+ + ++E +G
Sbjct: 598 MKPHIFEMFYTGKNTVADSRR-SFGIGLTLCKSIIELHG 635
>gi|34498900|ref|NP_903115.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
gi|34104749|gb|AAQ61106.1| probable two-component sensor [Chromobacterium violaceum ATCC
12472]
Length = 381
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMH 541
++ V ++ AL+ AL NL+E AL GG+V + + A+ D + ++DDGP + +
Sbjct: 269 AITVLIDRKALQGALINLLENALQFASPGGRVGL-AVASDGADVVFCVEDDGPGIDEAVR 327
Query: 542 S--LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
PF F++ + GL + +++ E G VR + +GG
Sbjct: 328 ERIFEPF----FTQRPGGTGL------GLAIVKKVAEELGGSVRCYNKV-------AGGA 370
Query: 600 RVELWLPS 607
EL LP+
Sbjct: 371 CFELRLPT 378
>gi|296283894|ref|ZP_06861892.1| two-component signal transduction histidine kinase [Citromicrobium
bathyomarinum JL354]
Length = 784
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539
SQ+L + + L +A+ L++ A+ + G++ +V A G +VI D+G M
Sbjct: 666 SQALKLQADPRQLGRAIGQLLDNAIEASGEKGRI-LVDLAKQDGGVRIVISDNGRGMDEN 724
Query: 540 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
+L G SE E GL +AR+L+E++G + S + GT
Sbjct: 725 ELALALDGMRSASEGGAEATRRQGL--GLPLARQLIEAHGGRFDIHSEKRI-------GT 775
Query: 600 RVELWLP 606
V LWLP
Sbjct: 776 SVSLWLP 782
>gi|158333496|ref|YP_001514668.1| hypothetical protein AM1_0268 [Acaryochloris marina MBIC11017]
gi|158303737|gb|ABW25354.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 386
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ PCN+ D++ + A++P H+Q + +E+ S +V ++ + Q NL+ AL
Sbjct: 240 VEPCNLHDLVAENIRALQP--HLQSQGMEICYPQTSEVVWIDRWQMLQVFDNLLSNALHF 297
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ GG++ + + L+ + D GP +
Sbjct: 298 SPQGGQITLTWQRFQT-EILIEVRDQGPGL 326
>gi|395786912|ref|ZP_10466639.1| PAS domain S-box protein [Bartonella tamiae Th239]
gi|423718169|ref|ZP_17692359.1| PAS domain S-box protein [Bartonella tamiae Th307]
gi|395423210|gb|EJF89406.1| PAS domain S-box protein [Bartonella tamiae Th239]
gi|395426602|gb|EJF92729.1| PAS domain S-box protein [Bartonella tamiae Th307]
Length = 806
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLT 544
++ LRQ L NL+ A+ T GG++ I +A + + + D+G M M +L
Sbjct: 687 IDAQELRQILLNLLSNAIRFTPSGGRIVIHAALTSNHEVKISVSDNGIGMTAEEMTKALQ 746
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVEL 603
PF + D++ GL ++ L+E+ G ++S P++ GT +E+
Sbjct: 747 PFMQVARKDGRTGDDVFIGTGLGLPTSKSLVENNGGRFLLLSKPYR--------GTTIEM 798
Query: 604 WLPS 607
+ P+
Sbjct: 799 FFPT 802
>gi|168699062|ref|ZP_02731339.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 682
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
++D + E RPL ++ ++ +S + + + L Q NL+ A T GG
Sbjct: 391 LADAIARAVETARPLIESRRHELIVSVPPDPIPLDADPTRLTQIFGNLLNNAAKYTDPGG 450
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFS-ENMVEDNMTWNFVAGLTV 570
++E+ SAA G A+V + D+G + M L F +LF+ E D GLT+
Sbjct: 451 RIEL-SAAREGGGAVVRVRDNGIGLSPEM-LLRAF--DLFTQEPRTLDRAQGGLGIGLTL 506
Query: 571 ARELLESYGCVV 582
R L+E +G V
Sbjct: 507 VRNLVELHGGSV 518
>gi|374578549|ref|ZP_09651645.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM471]
gi|374426870|gb|EHR06403.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM471]
Length = 581
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + ++ +++ + +R+A+ NLI A+ +
Sbjct: 429 PVDVAALVKEVAEANQPLAVNKQQAISVTA-PVNIVTMCDTDRIREAIDNLISNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GGK+ +V + GD +V + D+G +
Sbjct: 488 IGGKIGVV-VSHEGGDTIVRVSDEGAGL 514
>gi|84496067|ref|ZP_00994921.1| Putative two-component system sensor protein [Janibacter sp.
HTCC2649]
gi|84382835|gb|EAP98716.1| Putative two-component system sensor protein [Janibacter sp.
HTCC2649]
Length = 357
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEI-VSAAAPAGDALVVIDD-DGPDMHYMMHS 542
V V+ + Q L+NL++ AL T GG+V + V P + V D+ +G D H+++H
Sbjct: 240 VLVDPDRMAQVLANLLDNALQHTPPGGRVRVAVRKPDPDWVEITVTDNGEGIDAHHLVHV 299
Query: 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 602
F + + + GLT+++ L+E++G + SP GG
Sbjct: 300 FERF----YRADPARSRVRGGSGIGLTISKALVEAHGGGLSASSPGP------GGGAEFT 349
Query: 603 LWLP 606
L LP
Sbjct: 350 LRLP 353
>gi|377808398|ref|YP_004979590.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. YI23]
gi|357939595|gb|AET93152.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. YI23]
Length = 1388
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 11/163 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I P +V+ VL + + A ++ ++ S L + + + Q L NL+ AL
Sbjct: 1091 IVPVDVAAVLARIVDVSETEAAQREIRLRASNLGEPIYAFADAVRCEQILWNLVSNALKF 1150
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
T GG V++ A G + I D G + S P +++ ++ + +
Sbjct: 1151 TDRGGSVDL-KIARDGGMVRIDIADTGQGIEA---SALPHIFDMYRQS-ARNRTSGGLGI 1205
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609
GL +A++L+E +G + S LG G T + +WLP+ A
Sbjct: 1206 GLALAKQLVEMHGGRIEARSE-----GLGRGAT-LSVWLPAAA 1242
>gi|225870858|ref|YP_002746805.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
subsp. equi 4047]
gi|225700262|emb|CAW94499.1| putative alkaline phosphatase synthesis sensor protein
[Streptococcus equi subsp. equi 4047]
Length = 441
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S+
Sbjct: 302 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQL-SSQ 358
Query: 520 APAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
AG + + D G + + L + N + GL + +EL + G
Sbjct: 359 RVAGGVAITVADTGIGISQI--ELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLG 416
Query: 580 CVVRVISPWKTDAALGSGGTRVELWLP 606
+ V S LG G++ L+LP
Sbjct: 417 GQITVTSQ------LGE-GSQFTLFLP 436
>gi|338813829|ref|ZP_08625911.1| integral membrane sensor signal transduction histidine kinase
[Acetonema longum DSM 6540]
gi|337274179|gb|EGO62734.1| integral membrane sensor signal transduction histidine kinase
[Acetonema longum DSM 6540]
Length = 420
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRT 507
P ++S+++G + E +PLA M Q+ELS +++Q + + ++ L Q + L++ A T
Sbjct: 270 PLDISELIGTVAEQFKPLAEMN--QIELSVQITQKVELIADKERLHQLVVILLDNAFKYT 327
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDG 533
GG++ ++S A++ + D G
Sbjct: 328 PAGGQI-LISCFTADKQAVIYVQDTG 352
>gi|254251537|ref|ZP_04944855.1| hypothetical protein BDAG_00726 [Burkholderia dolosa AUO158]
gi|124894146|gb|EAY68026.1| hypothetical protein BDAG_00726 [Burkholderia dolosa AUO158]
Length = 448
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATVREPVDLHALLAECVAAYAPLA--QRRGIDLGFEEARAATVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|410422433|ref|YP_006902882.1| sensor kinase protein [Bordetella bronchiseptica MO149]
gi|427823035|ref|ZP_18990097.1| putative sensor kinase protein [Bordetella bronchiseptica Bbr77]
gi|408449728|emb|CCJ61420.1| putative sensor kinase protein [Bordetella bronchiseptica MO149]
gi|410588300|emb|CCN03357.1| putative sensor kinase protein [Bordetella bronchiseptica Bbr77]
Length = 471
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHTEGGHAWLVVEDNGPGM 395
>gi|269796545|ref|YP_003316000.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
10542]
gi|269098730|gb|ACZ23166.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
10542]
Length = 526
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPD 535
+E + ++V +E LRQ L NL+ A + T G +V V AG+ +VV + DDGP
Sbjct: 374 AEDADGVVVRGDEARLRQVLVNLLSNARVHTPPGTRV--VLGLRTAGEEVVVTVTDDGPG 431
Query: 536 MHYMMHSLTPFGSELFSENMVEDNMTWNFVA-GLTVARELLESYGCVVRVISPWK----- 589
+ +L P + FS N G+ +A+ +++ +G V V SP
Sbjct: 432 IP---STLLPTLFQRFSRGDAARNRVGGSTGLGMAIAQAIVQEHGGSVTVRSPASPQTST 488
Query: 590 -------TDAALGSG-GTRVELWLPSPAPLSD 613
D GSG GT E+ LPS AP D
Sbjct: 489 GSEGPAGRDPRAGSGPGTTFEVTLPS-APAGD 519
>gi|225868205|ref|YP_002744153.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
subsp. zooepidemicus]
gi|225701481|emb|CAW98633.1| putative alkaline phosphatase synthesis sensor protein
[Streptococcus equi subsp. zooepidemicus]
Length = 441
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S+
Sbjct: 302 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQL-SSQ 358
Query: 520 APAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
AG + + D G + + L + N + GL + +EL + G
Sbjct: 359 RVAGGVAITVADTGIGISQI--ELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLG 416
Query: 580 CVVRVISPWKTDAALGSGGTRVELWLP 606
+ V S LG G++ L+LP
Sbjct: 417 GQITVTSQ------LGE-GSQFTLFLP 436
>gi|338532892|ref|YP_004666226.1| sensor histidine kinase [Myxococcus fulvus HW-1]
gi|215433461|gb|ACJ66696.1| sensor histidine kinase [Myxococcus fulvus HW-1]
gi|337258988|gb|AEI65148.1| sensor histidine kinase [Myxococcus fulvus HW-1]
Length = 542
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSEL-------------SQSLL 484
A+ L++ IR + D++ DL + VRPL + R V+L EL + +L
Sbjct: 361 AVGMLEEEAIR---LEDIVRDLLDVVRPL-EPRPRPVQLGELVRRALGQMHGPPDAPTLR 416
Query: 485 VAVEEPA-----------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+V+E A L+ A+++L+ A+ + GGKV + A G LVV +D+G
Sbjct: 417 FSVDEAAGTPALEGDETLLQLAVTHLVRNAVQASPAGGKVRMTVEPADGGVRLVV-EDEG 475
Query: 534 PDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 591
P + + PF F + GL + R ++ ++ VR S +
Sbjct: 476 PGIPDVDPQRVFQPF----FLTRANGRGL------GLAIVRRVVLAHEGSVRASSRPR-- 523
Query: 592 AALGSGGTRVELWLP 606
GG R ELWLP
Sbjct: 524 -----GGARFELWLP 533
>gi|404494772|ref|YP_006718878.1| sensor histidine kinase, HAMP domain-containing [Pelobacter
carbinolicus DSM 2380]
gi|77546755|gb|ABA90317.1| sensor histidine kinase, HAMP domain-containing [Pelobacter
carbinolicus DSM 2380]
Length = 477
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS---ELSQSLLVAVEEPALRQALSNLIEGA 503
I+ ++SD+L +L+ R LA Q + +EL +++ + + ++ LRQ NLI A
Sbjct: 314 IKEMSLSDLLQELYLQGRSLA--QPKSIELVLHPNVTEEIRILADKMRLRQVFLNLIANA 371
Query: 504 LMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNM 560
+ T GG+VEI +S + +V + D G + ++ H F + N ED
Sbjct: 372 INYTPDGGQVEISLSVDGEQDEVIVKVSDTGIGIPAEHLPHIFDRFYRVDRARNR-EDGG 430
Query: 561 TWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALGSGGTRVELWLPSPAP 610
T GL + ++++G V V S P K GT ++LP P
Sbjct: 431 TG---LGLAIVDSFVKAHGGRVEVFSVPEK--------GTTFTVFLPRKGP 470
>gi|383791053|ref|YP_005475627.1| histidine kinase,Response regulator receiver domain protein,PAS
domain-containing protein,histidine kinase [Spirochaeta
africana DSM 8902]
gi|383107587|gb|AFG37920.1| histidine kinase,Response regulator receiver domain protein,PAS
domain-containing protein,histidine kinase [Spirochaeta
africana DSM 8902]
Length = 501
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 62/151 (41%), Gaps = 28/151 (18%)
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------P 521
++EL S L+ + L QA+ NL+ A GG V I S A P
Sbjct: 357 VAELDGSCLIHADAGLLEQAVINLVLNARDAMPDGGTVLIRSRLADVHEQAQLALDTLPP 416
Query: 522 AGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
++ + D GP + + H PF FS + F GL++ +++
Sbjct: 417 GSYVVITVQDQGPGIPAEALEHIFEPF----FSTKA----ESSGFGLGLSIVYGIVKQSR 468
Query: 580 CVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
+ V+SP DA GGTR +L+LP P
Sbjct: 469 GYIEVVSPVAPDA----GGTRFDLYLPVLKP 495
>gi|383774948|ref|YP_005454017.1| two-component sensor histidine kinase [Bradyrhizobium sp. S23321]
gi|381363075|dbj|BAL79905.1| two-component sensor histidine kinase [Bradyrhizobium sp. S23321]
Length = 432
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L +F+ + PLA +Q ++E + +++A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIFQVADGLEPLARERQVEIETNLPEAPVMIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIV--SAAAPAG--DALVVIDDDGPDM 536
L GG+V + SAAAP G + +++ D GP +
Sbjct: 327 LKYGASGGRVIVSMNSAAAPDGTPEIRILVRDFGPGI 363
>gi|345873529|ref|ZP_08825436.1| integral membrane sensor signal transduction histidine kinase
[Thiorhodococcus drewsii AZ1]
gi|343917109|gb|EGV27920.1| integral membrane sensor signal transduction histidine kinase
[Thiorhodococcus drewsii AZ1]
Length = 479
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 481 QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HY 538
+ L+V +L++ALSNLI+ A+ + GG V+ VS G L+ IDD GP +
Sbjct: 354 ERLIVRCRPVSLKRALSNLIDNAV---KYGGTVQ-VSLTTDDGQHLICIDDAGPGIPEDL 409
Query: 539 MMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ PF F T GL+VAR ++ ++G + +I+
Sbjct: 410 LEKVFAPF----FRLEASRSRETGGTGLGLSVARTIVHAHGGTLVLIN 453
>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
[Thermincola potens JR]
gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
[Thermincola potens JR]
Length = 547
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
NV + + + + +RPLA QQ+ +++ S ++ + ++ +E +RQ + NL+ A+ T
Sbjct: 389 VNVGEAVRGVEKLLRPLA--QQKNIDMQSAITGTNVIIADEEKVRQVIRNLLGNAIKFTP 446
Query: 509 VGGKVEIV--SAAAPAGDALVVIDDDGPDM 536
GG++E+ P L+ + D GP +
Sbjct: 447 AGGRIELYVRDTDRPDEGVLLTVKDSGPGI 476
>gi|255020611|ref|ZP_05292674.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus ATCC 51756]
gi|340781140|ref|YP_004747747.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus SM-1]
gi|254969996|gb|EET27495.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus ATCC 51756]
gi|340555293|gb|AEK57047.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
caldus SM-1]
Length = 494
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L +L ++PL +Q+++E++ + L V + L Q LSNL+ A + V G
Sbjct: 347 LQELCGRMQPLLDRRQQKMEIA-VDAGLQVRADPKRLLQILSNLVSNA-HKYSVSGDTIR 404
Query: 516 VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL 575
V+A A + + D GP + +L E F + N+ GL +AREL+
Sbjct: 405 VAARAEGAGVRIQVRDHGPGIP---EALLGRVFERFFQVSASSNLPRGTGLGLAIARELV 461
Query: 576 ESYGCVVRVIS-PWKTDAALGSGGTRVELWLPSPAP 610
+ +RV + P GG E+WLP+P P
Sbjct: 462 LAQHGEIRVRNHP--------QGGLSAEVWLPAPPP 489
>gi|221211365|ref|ZP_03584344.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD1]
gi|221168726|gb|EEE01194.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD1]
Length = 448
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
L G L L A+ KA + E + +A + ++ ++ +R + + LQ+
Sbjct: 200 LNGLLARLSGALDTQKAFVADAAHELRTPL--AAVQIQAQLVARAKDDAARREALDDLQH 257
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR-PCNVSDVLGDLFEAVRPLAHMQQRQVE 475
T A + + LA A +R P ++ +L + A PLA Q+R ++
Sbjct: 258 GV------TRATRLAEQLLALARAEPDAGAVREPVDLQTLLAECVAAHAPLA--QRRNID 309
Query: 476 LS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
L E +++ V + ALR NL++ A+ T GG++++ AG A V I D GP
Sbjct: 310 LGFEETRAATVVADVGALRVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGP 369
Query: 535 DM 536
+
Sbjct: 370 GI 371
>gi|256824368|ref|YP_003148328.1| signal transduction histidine kinase [Kytococcus sedentarius DSM
20547]
gi|256687761|gb|ACV05563.1| signal transduction histidine kinase [Kytococcus sedentarius DSM
20547]
Length = 389
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 482 SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMM 540
L V V+ + Q L NL+ AL T GG+V + + +P+G L V D +G ++
Sbjct: 250 GLAVDVDRQRMGQVLGNLLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLP 309
Query: 541 HSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
H F + + D GL ++R L++++G + S
Sbjct: 310 HVFERF----YRGDTARDRDHGGSGVGLAISRALIQAHGGTLSATS 351
>gi|383763337|ref|YP_005442319.1| putative two-component histidine kinase [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381383605|dbj|BAM00422.1| putative two-component histidine kinase [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 473
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 444 QNGI-RPCNVSDVLGDLFEAVRPLAHMQQRQVELSEL--SQSLLVAVEEPALRQALSNLI 500
QNGI ++ D+ L E P AH+ ++ L EL + + V+ AL+Q L NLI
Sbjct: 311 QNGIILHRSLIDLERWLQEEFMPQAHLLVKESHL-ELRPGEPTKLYVDPDALKQVLFNLI 369
Query: 501 EGALMRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDN 559
+ A+ T G +++ A A A + V D +G + H +PF + +
Sbjct: 370 DNAVQHTSTNGNIQLGWQATASAVNIWVADDGEGIAPVDLPHIFSPF----YRGDRSRSR 425
Query: 560 MTWNFVAGLTVARELLESYGCVVRVIS 586
+ GLT+ + ++E++G VRV S
Sbjct: 426 LRGGAGLGLTIVKRIVEAHGGEVRVAS 452
>gi|339499361|ref|YP_004697396.1| integral membrane sensor signal transduction histidine kinase
[Spirochaeta caldaria DSM 7334]
gi|338833710|gb|AEJ18888.1| integral membrane sensor signal transduction histidine kinase
[Spirochaeta caldaria DSM 7334]
Length = 455
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 132/334 (39%), Gaps = 54/334 (16%)
Query: 266 ERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSS 325
ER Y + L +I S+ +A + + ++L+Q++ + A +L +RG
Sbjct: 147 ERFIQYGLISLLTLLIFSITMSIIIANSITKSVLILEQATRRIAAGELDLEVAVRGS--- 203
Query: 326 IQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKK 385
+++ SL + + D+ EDI+ + + G +L+ + L K Y E
Sbjct: 204 ----NEITSLTSSLNRMRLDLKEDIIRRSRFIMGISHDLKTPLALIKG----YTEAIRDG 255
Query: 386 MNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQN 445
+ + S +I LS E + L + + + + IE P P A K+
Sbjct: 256 ITDDQASKSRAIDIILSKVEQLEGMIDDLMDFVRMDTSEWQQHLIEQPFLPFLYAFCKRV 315
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGAL 504
I A + R+V + + V + E + +AL NLI AL
Sbjct: 316 SID------------------AQLLHREVAFDLNIPEHTQVKMNEALITRALENLISNAL 357
Query: 505 MRTQVGGKVEIVSA----AAPAGDALVVIDDDG-----PDMHYMMHSLTPFGSELF---S 552
T+ GGKV+I + A LV I D+G D+ + ELF +
Sbjct: 358 RYTREGGKVQITAQLENRAMNKSAILVTITDNGIGIDQEDLDRIF--------ELFYRGT 409
Query: 553 ENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ E M GL+V + +++S+G + V S
Sbjct: 410 NSRREAGMG----IGLSVVKSIIDSHGWKISVFS 439
>gi|387906011|ref|YP_006336348.1| Multi-sensor hybrid histidine kinase [Burkholderia sp. KJ006]
gi|387580903|gb|AFJ89617.1| Multi-sensor hybrid histidine kinase [Burkholderia sp. KJ006]
Length = 766
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 15/276 (5%)
Query: 319 IRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378
+RG + LS L+L R + D+ +QG R T +E D K ++
Sbjct: 347 VRGDARNCVALS--LTLRETRVQRRRDLRTQRSLQGAR---TARERADTSNRLKDELLAT 401
Query: 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLA 438
L+ N Y E +RS ++ ++ + + + S SL DI + LA
Sbjct: 402 VSHELRTPLNVIYGWVEVLRSA-GDDALQQQAIDAIDRSAH--SLTRMVGDI-LDASSLA 457
Query: 439 LAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSN 498
L+ + + P +V + D A + A +E + + +V+ + LRQ LSN
Sbjct: 458 TGKLRLDAM-PVDVVRLFADATSAFQTAASAAGIALEFDCTASACVVSGDAERLRQMLSN 516
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVE 557
L+ AL T GG V V+ A A++ + D G + P+ ++F +
Sbjct: 517 LVSNALKFTPAGGAVT-VTLTHDAAHAVLAVGDTG---QGIASEFIPYVFDMFRRADGSP 572
Query: 558 DNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
+ GL++ R + E +G VRV S + A
Sbjct: 573 ASPRRGLGLGLSIVRHIAELHGGEVRVDSAGRNRGA 608
>gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
69.14]
gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
69.14]
Length = 999
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH-- 537
+ ++LV V+ L Q L+NL+ A+ + G+V IV G A+V + D GP ++
Sbjct: 612 ANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQV-IVEVTTDNGKAIVSVIDQGPGINQA 670
Query: 538 YMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG 597
+ F S+ ++ GL ++REL+E G + ++ +G
Sbjct: 671 FRERIFQRFAQADSSDTRAKEGTGL----GLAISRELIERMGGQIDF------ESTMGK- 719
Query: 598 GTRVELWLPSPAPLSDLNGKSN 619
G+R LP +PL L SN
Sbjct: 720 GSRFFFVLPLVSPLCTLKSDSN 741
>gi|195978473|ref|YP_002123717.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195975178|gb|ACG62704.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 432
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 461 EAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAA 519
+++RP ++Q+Q+ELS L S++V ++ L Q + NL+ A+ T GG++++ S+
Sbjct: 293 QSMRP--QLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQL-SSQ 349
Query: 520 APAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
AG + + D G + + L + N + GL + +EL + G
Sbjct: 350 RVAGGVAITVADTGIGISQI--ELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLG 407
Query: 580 CVVRVISPWKTDAALGSGGTRVELWLP 606
+ V S LG G++ L+LP
Sbjct: 408 GQITVTSQ------LGE-GSQFTLFLP 427
>gi|161523861|ref|YP_001578873.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|189351378|ref|YP_001947006.1| OmpR family two-component system sensor histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|221200186|ref|ZP_03573229.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2M]
gi|221206661|ref|ZP_03579673.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2]
gi|421477153|ref|ZP_15924999.1| GHKL domain protein [Burkholderia multivorans CF2]
gi|160341290|gb|ABX14376.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|189335400|dbj|BAG44470.1| OmpR family two-component system sensor histidine kinase
[Burkholderia multivorans ATCC 17616]
gi|221173316|gb|EEE05751.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2]
gi|221180425|gb|EEE12829.1| periplasmic sensor signal transduction histidine kinase
[Burkholderia multivorans CGD2M]
gi|400227021|gb|EJO57045.1| GHKL domain protein [Burkholderia multivorans CF2]
Length = 448
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 12/182 (6%)
Query: 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQN 416
L G L L A+ KA + E + +A + ++ ++ +R + + LQ+
Sbjct: 200 LNGLLARLSGALDTQKAFVADAAHELRTPL--AAVQIQAQLVARAKDDAARREALDDLQH 257
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR-PCNVSDVLGDLFEAVRPLAHMQQRQVE 475
T A + + LA A +R P ++ +L + A PLA Q+R ++
Sbjct: 258 GV------TRATRLAEQLLALARAEPDAGAVREPVDLQTLLAECVAAHAPLA--QRRNID 309
Query: 476 LS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
L E +++ V + ALR NL++ A+ T GG++++ AG A V I D GP
Sbjct: 310 LGFEETRAATVVADVGALRVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGP 369
Query: 535 DM 536
+
Sbjct: 370 GI 371
>gi|427817301|ref|ZP_18984364.1| putative sensor kinase protein [Bordetella bronchiseptica D445]
gi|410568301|emb|CCN16334.1| putative sensor kinase protein [Bordetella bronchiseptica D445]
Length = 471
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 440 APLKQNGI--RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALS 497
A L + G+ +++++ + A+ P A +Q + L + + V E LR+ALS
Sbjct: 298 ASLAEGGLPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALS 357
Query: 498 NLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
NL++ A+ T G +V V G A +V++D+GP M
Sbjct: 358 NLVDNAIRYTARGSEV-TVKVHTDGGHAWLVVEDNGPGM 395
>gi|378716496|ref|YP_005281385.1| putative two-component system sensor kinase [Gordonia
polyisoprenivorans VH2]
gi|375751199|gb|AFA72019.1| putative two-component system sensor kinase [Gordonia
polyisoprenivorans VH2]
Length = 466
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAP---AGDALVVIDDDGPDMHYMMHSLTPFGSEL 550
Q L+NLI+ A T GG+VE+ A AP G V + D GP + E
Sbjct: 338 QILANLIDNACQATPAGGRVEVAVAHAPTESGGWVTVTVSDTGP-------GVPDADRER 390
Query: 551 FSENMV-----EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 603
+ MV D + GL VAR L ++G VR++ P D A R+EL
Sbjct: 391 IFDRMVRLDDSRDRRSGGAGLGLAVARGLARAHGGEVRLL-PRTPDGATQGAVFRLEL 447
>gi|425898047|ref|ZP_18874638.1| sensor histidine kinase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397891735|gb|EJL08213.1| sensor histidine kinase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 461
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T+ GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTRPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|115375189|ref|ZP_01462456.1| signal transduction histidine kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115367840|gb|EAU66808.1| signal transduction histidine kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 461
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G +S+VL +L EA RP+A +++ S + L + + L Q +NL+E
Sbjct: 301 RKGGFERLCLSEVLENLVEAYRPVAEDHGQRLTAS-ICPKLFIQGDRSLLAQLFANLVEN 359
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL + G + + A G V + D GP +
Sbjct: 360 ALRHSGRGSAIHLGLEAGADGGFTVTVSDTGPGI 393
>gi|444915463|ref|ZP_21235595.1| Chemotaxis protein methyltransferase CheR [Cystobacter fuscus DSM
2262]
gi|444713394|gb|ELW54294.1| Chemotaxis protein methyltransferase CheR [Cystobacter fuscus DSM
2262]
Length = 750
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 15/161 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P + V+ EA PL ++ +E+ S LLV + L Q ++NL+ A T
Sbjct: 450 PLELVSVVTRAVEAASPLIEQRRHALEVHVPSSGLLVLADADRLTQVVANLLTNAARYTP 509
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS--LTPFGSELFSENMVEDNMTWNFVA 566
GG + + A G + ++DDG + + S PF S + E +
Sbjct: 510 SGGHIRL-RAHGHEGSIALAVEDDGQGIPPELRSRIFEPFVQGPRSLDRSEGGLG----I 564
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLP 606
GL + R L+E++G V + S G G G+ +WLP
Sbjct: 565 GLALVRSLVEAHGGHVELHSD-------GPGRGSTFTVWLP 598
>gi|428221168|ref|YP_007105338.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
gi|427994508|gb|AFY73203.1| signal transduction histidine kinase [Synechococcus sp. PCC 7502]
Length = 387
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 10/151 (6%)
Query: 436 PLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSL-LVAVEEPALR 493
PL L P+ + I N++++L +L + +A Q++Q++L S + L V ALR
Sbjct: 226 PLLLPPVLE--IVAVNLAEILENLLLSATAIA--QEKQLQLTSHIPHELPFVQGNAIALR 281
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE 553
+ L+NLI+ A+ T + GKV++V A + V + D G + L+ F
Sbjct: 282 EVLNNLIDNAIKYTPMTGKVDVV-ATFNSEHVEVKVKDTGVGIDEF--DLSHLFERNFRG 338
Query: 554 NMVEDNMTWNFVAGLTVARELLESYGCVVRV 584
+ N+T + GL +AR+L+E ++V
Sbjct: 339 RQAKGNITGTGL-GLAIARDLVEKMSGEIKV 368
>gi|254561704|ref|YP_003068799.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254268982|emb|CAX24943.1| putative histidine kinase with HK Homodimeric domain, ATPase domain
and a sensory PAS domain [Methylobacterium extorquens
DM4]
Length = 842
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTP 545
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M +M +L P
Sbjct: 732 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 791
Query: 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 792 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 839
Query: 606 PS 607
P+
Sbjct: 840 PA 841
>gi|392422929|ref|YP_006459533.1| two-component sensor PhoQ [Pseudomonas stutzeri CCUG 29243]
gi|390985117|gb|AFM35110.1| two-component sensor PhoQ [Pseudomonas stutzeri CCUG 29243]
Length = 446
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 23/135 (17%)
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGA--LMRTQVGGKVEIVSAAAPAGDALVVID 530
QVE+ +L++ LV +E+ AL + L NL+E A L QV +SA+ GD L+ ++
Sbjct: 328 QVEM-QLAEPCLVPMEQGALMELLGNLLENAYRLCLQQV-----RISASHHEGDLLLGVE 381
Query: 531 DDGPDMHYMMHSLTPFGSELFSENMVE--DNMTWNFVAGLTVARELLESYGCVVRVISPW 588
DDGP + P G E D GL V +++L+SYG + +
Sbjct: 382 DDGPGV--------PVGQRERIIRRGERLDGQHPGQGIGLAVVKDILDSYGGELSL---- 429
Query: 589 KTDAALGSGGTRVEL 603
++ALG R+ L
Sbjct: 430 -GESALGGAAFRIRL 443
>gi|325110444|ref|YP_004271512.1| integral membrane sensor signal transduction histidine kinase
[Planctomyces brasiliensis DSM 5305]
gi|324970712|gb|ADY61490.1| integral membrane sensor signal transduction histidine kinase
[Planctomyces brasiliensis DSM 5305]
Length = 460
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
L ++ ++PLA + LS + + +V + LRQ L NLIE A+ T + G V+
Sbjct: 317 LAEIVATMQPLATANNIHLSLSPTTSTAVVLSDRERLRQVLDNLIENAVKYTPIAGSVQ- 375
Query: 516 VSAAAPAGDALVVIDDDG 533
V+ + A A + I+D G
Sbjct: 376 VAVSMHADAATITIEDTG 393
>gi|24414810|emb|CAD55623.1| putative sensory kinase [Synechococcus elongatus PCC 7942]
Length = 405
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 104/288 (36%), Gaps = 74/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 157 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 207
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 208 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 237
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 238 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 277
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHS 542
V PA L++ L NL+E A T V G + + A + DDGP + + H
Sbjct: 278 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 336
Query: 543 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 587
LF N GL +AR+L +S G +R SP
Sbjct: 337 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 377
>gi|398826228|ref|ZP_10584487.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
gi|398221661|gb|EJN08065.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
Length = 432
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 447 IRPCNVSDVL---GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
+RP + D+L + + + PLA +Q +VE+ Q +L+A + L + NLIE A
Sbjct: 267 VRPDTLVDLLPIIRQVADGLEPLARERQVEVEIHLPEQPVLIAGDREELLRLFENLIENA 326
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL----VVIDDDGPDM 536
L GG+V + A+ A D +++ D GP +
Sbjct: 327 LKYGASGGRVIVSLASGTANDGTQEVRIMVRDFGPGI 363
>gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
Length = 914
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P + +V+ E +P + ++ LS +Q L V + L Q ++NL+ A+ T
Sbjct: 618 QPVELKEVVMQAVETAQPAIESARHELTLSLPAQPLKVEADPVRLVQIVANLLNNAVNYT 677
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFVA 566
GG +++ A + G+A++ + D+G ++ P+ ++F++ + D
Sbjct: 678 PSGGHIQLQVAQSQEGEAIIRVRDNGVG---ILPEKLPYIFDIFTQADRSLDQAQSGLGL 734
Query: 567 GLTVARELLESYG 579
GLT+ L E +G
Sbjct: 735 GLTLVHRLTEMHG 747
>gi|284046157|ref|YP_003396497.1| integral membrane sensor signal transduction histidine kinase
[Conexibacter woesei DSM 14684]
gi|283950378|gb|ADB53122.1| integral membrane sensor signal transduction histidine kinase
[Conexibacter woesei DSM 14684]
Length = 504
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 21/176 (11%)
Query: 447 IRP--CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGAL 504
+RP +++ + +LF+A L R EL EL Q L+A +E + Q L NL A+
Sbjct: 340 VRPHSLDLAPFVTELFDA---LTLTADRAFELGELPQGRLLA-DEDRVAQVLRNLARNAV 395
Query: 505 MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNF 564
T GG V + I+DDGP + + T
Sbjct: 396 EHTGPGGLVRLTVRVLDRTQVEFAIEDDGPGIPPEQRDRVF--DRFHRTDSARARRTGGA 453
Query: 565 VAGLTVARELLESYGCVVRVISPWKTDAALGS---GGTRVELWLPSPAPLSDLNGK 617
GL +AR ++E++G + A GS GG RV LP S GK
Sbjct: 454 GLGLAIARAIVEAHGGTI----------AAGSSPEGGARVAFTLPGFRAASKRAGK 499
>gi|171320060|ref|ZP_02909129.1| GntR domain protein [Burkholderia ambifaria MEX-5]
gi|171094689|gb|EDT39734.1| GntR domain protein [Burkholderia ambifaria MEX-5]
Length = 249
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 432 MPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLLVA 486
MP+ P A+A + +N P V+D + D EA V P+ + Q +LSE +
Sbjct: 1 MPVRP-AIAHIMKNV--PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE-----LE 52
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSLTP 545
+ +LR+ALS L ++R + G V + SA A A + PD + M ++L
Sbjct: 53 ISRASLREALSTLEALGMLRIRAGKGVYVESAQASAAHPWQFAEQSSPPDTYQMRYALEG 112
Query: 546 FGSELFSENMVEDNMTW 562
F + + + + +D++ W
Sbjct: 113 FAARMAAHVVTDDDIAW 129
>gi|416935529|ref|ZP_11933982.1| GntR family transcriptional repressor for pyruvate dehydrogenase
complex [Burkholderia sp. TJI49]
gi|325525163|gb|EGD03039.1| GntR family transcriptional repressor for pyruvate dehydrogenase
complex [Burkholderia sp. TJI49]
Length = 230
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 449 PCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGA 503
P V+D + D EA V P+ + Q +LSE + + +LR+ALS L
Sbjct: 5 PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE-----LEISRASLREALSTLEALG 59
Query: 504 LMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSLTPFGSELFSENMVEDNMTW 562
++R + G V + SA A A A + PD + M ++L F + + + + +D++ W
Sbjct: 60 MLRIRAGKGVYVESARATAAHAWQFAEQSSPPDTYQMRYALEGFAARMAARVVTDDDIAW 119
>gi|427823058|ref|ZP_18990120.1| probable two-component sensor protein [Bordetella bronchiseptica
Bbr77]
gi|410588323|emb|CCN03380.1| probable two-component sensor protein [Bordetella bronchiseptica
Bbr77]
Length = 781
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 18/257 (7%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IDEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 M--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
+ + PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---SSG 762
Query: 594 LGSGGTRVELWLPSPAP 610
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|427812271|ref|ZP_18979335.1| probable two-component sensor protein [Bordetella bronchiseptica
1289]
gi|410563271|emb|CCN20805.1| probable two-component sensor protein [Bordetella bronchiseptica
1289]
Length = 781
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 18/257 (7%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
++E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IAEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 M--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
+ + PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 594 LGSGGTRVELWLPSPAP 610
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|167035383|ref|YP_001670614.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
gi|166861871|gb|ABZ00279.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida GB-1]
Length = 459
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVVAP---AVLEVEDDGPGI 402
>gi|424921897|ref|ZP_18345258.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
gi|404303057|gb|EJZ57019.1| Signal transduction histidine kinase [Pseudomonas fluorescens R124]
Length = 461
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AAP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVAAP---AVLEVEDDGPGI 402
>gi|359769226|ref|ZP_09272989.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
gi|359313529|dbj|GAB25822.1| putative two-component histidine kinase [Gordonia
polyisoprenivorans NBRC 16320]
Length = 466
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAP---AGDALVVIDDDGPDMHYMMHSLTPFGSEL 550
Q L+NLI+ A T GG+VE+ A AP G V + D GP + E
Sbjct: 338 QILANLIDNACQATPAGGRVEVAVAHAPTESGGWVTVTVSDTGP-------GVPDADRER 390
Query: 551 FSENMV-----EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 603
+ MV D + GL VAR L ++G VR++ P D A R+EL
Sbjct: 391 IFDRMVRLDDSRDRRSGGAGLGLAVARGLARAHGGEVRLL-PRTPDGATQGAVFRLEL 447
>gi|449018291|dbj|BAM81693.1| probable two-component sensor histidine kinase [Cyanidioschyzon
merolae strain 10D]
Length = 911
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 312 MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLT 371
+SN++ Q + P+++++T K+L + +++ D+ DI+VQ +RL L L D V L
Sbjct: 456 LSNILHQAKSPITALRTFGKLLLRRLPPGDVNRDLARDIIVQCERLNELLSPL-DTVTLQ 514
Query: 372 KANI 375
A +
Sbjct: 515 VAQL 518
>gi|19554153|ref|NP_602155.1| two-component system, sensory transduction histidine kinase
[Corynebacterium glutamicum ATCC 13032]
gi|62391808|ref|YP_227210.1| two component sensor kinase [Corynebacterium glutamicum ATCC 13032]
gi|21325737|dbj|BAC00358.1| Two-component system, sensory transduction histidine kinases
[Corynebacterium glutamicum ATCC 13032]
gi|41327150|emb|CAF20994.1| probable two component sensor kinase [Corynebacterium glutamicum
ATCC 13032]
gi|385145043|emb|CCH26082.1| two-component system, sensory transduction histidine kinase
[Corynebacterium glutamicum K051]
Length = 399
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ + ++ V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETIMDTVRVLVDRQRFGQVMSNLLSNALRYTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ + H F + + GLT+++ L+E++G + SP
Sbjct: 300 EGIPPGQLGHIFERF----YRGDAARSRDNGGAGIGLTISKALIEAHGGTLTATSP 351
>gi|222056250|ref|YP_002538612.1| heavy metal sensor signal transduction histidine kinase [Geobacter
daltonii FRC-32]
gi|221565539|gb|ACM21511.1| heavy metal sensor signal transduction histidine kinase [Geobacter
daltonii FRC-32]
Length = 486
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+G++ E +P+A + + + +S L+ + L A + R+A+SNLI +L T+ GG V I
Sbjct: 339 VGEIIEYYQPVA--EDKGINISCLNNATLYA-DRTLFRRAVSNLISNSLHYTEAGGSVSI 395
Query: 516 VSAAAPAGDALVVIDDDG 533
+ AP V + D G
Sbjct: 396 STRQAPNRSIEVTVRDTG 413
>gi|448452463|ref|ZP_21593346.1| multi-sensor signal transduction histidine kinase [Halorubrum
litoreum JCM 13561]
gi|445808784|gb|EMA58839.1| multi-sensor signal transduction histidine kinase [Halorubrum
litoreum JCM 13561]
Length = 552
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSL 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP +
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP-------GI 488
Query: 544 TPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 602
P E +F + D F GL + E+ E++G V + A +GGTR E
Sbjct: 489 DPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTRFE 539
Query: 603 L 603
Sbjct: 540 F 540
>gi|399009588|ref|ZP_10712015.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
gi|398111398|gb|EJM01282.1| signal transduction histidine kinase [Pseudomonas sp. GM17]
Length = 461
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
+ + G + ++S + +L A+ PLAH + + L E + + + E L + LSNL++
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHARGIALAL-EADEPVWLRGEPTLLNELLSNLVD 371
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL T+ GG V I+ +AP A++ ++DDGP +
Sbjct: 372 NALAHTKPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|448426216|ref|ZP_21583162.1| multi-sensor signal transduction histidine kinase [Halorubrum
terrestre JCM 10247]
gi|445679707|gb|ELZ32167.1| multi-sensor signal transduction histidine kinase [Halorubrum
terrestre JCM 10247]
Length = 552
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSL 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP +
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP-------GI 488
Query: 544 TPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 602
P E +F + D F GL + E+ E++G V + A +GGTR E
Sbjct: 489 DPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTRFE 539
Query: 603 L 603
Sbjct: 540 F 540
>gi|56751074|ref|YP_171775.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
6301]
gi|56686033|dbj|BAD79255.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
6301]
Length = 408
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 104/288 (36%), Gaps = 74/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 160 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 210
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 211 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 240
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 241 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 280
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHS 542
V PA L++ L NL+E A T V G + + A + DDGP + + H
Sbjct: 281 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 339
Query: 543 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 587
LF N GL +AR+L +S G +R SP
Sbjct: 340 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 380
>gi|240139110|ref|YP_002963585.1| histidine kinase with HK Homodimeric domain, ATPase domain and a
sensory PAS domain [Methylobacterium extorquens AM1]
gi|240009082|gb|ACS40308.1| putative histidine kinase with HK Homodimeric domain, ATPase domain
and a sensory PAS domain [Methylobacterium extorquens
AM1]
Length = 843
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTP 545
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M +M +L P
Sbjct: 733 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 792
Query: 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 793 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 840
Query: 606 PS 607
P+
Sbjct: 841 PA 842
>gi|92113905|ref|YP_573833.1| sensor signal transduction histidine kinase [Chromohalobacter
salexigens DSM 3043]
gi|91796995|gb|ABE59134.1| periplasmic sensor signal transduction histidine kinase
[Chromohalobacter salexigens DSM 3043]
Length = 466
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
V D++ DL+ PLAH + +++ L L Q L + +E + NL++ AL T GG
Sbjct: 327 VIDLMADLW----PLAHDRGQRLTLEGLHQ-LRIQADETEVGILFRNLLDNALRYTPEGG 381
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDM 536
VE+ G+A + + D GP +
Sbjct: 382 HVEVELGETTQGNAQIRVRDSGPGI 406
>gi|425457232|ref|ZP_18836938.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9807]
gi|389801469|emb|CCI19358.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9807]
Length = 418
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + I+ + DR+R + E + +
Sbjct: 193 GNDPAITGILRESDRVRDLIAEFEAQI 219
>gi|334339006|ref|YP_004543986.1| ATP-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334090360|gb|AEG58700.1| ATP-binding region ATPase domain protein [Desulfotomaculum ruminis
DSM 2154]
Length = 473
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +L + ++PLA +Q ++E+ E ++ + + L QAL N++ A+ T
Sbjct: 318 PIKAGSLLEEALWVMKPLAAERQVKLEMKEAGEAWIEG-DPDWLHQALVNVLGNAVYYTP 376
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
GG++ I G VVI+D G + M LT G+ F + + + GL
Sbjct: 377 TGGRIGI-QTEIKQGQVHVVIEDSGKGVP--MEVLTRLGTRFFRPSTARERSSGGSGLGL 433
Query: 569 TVARELLESYGCVVRVISP 587
++ +++L + + SP
Sbjct: 434 SIVKDILRLHNGRLEFASP 452
>gi|33599011|ref|NP_886571.1| two-component sensor protein [Bordetella bronchiseptica RB50]
gi|412340680|ref|YP_006969435.1| two-component sensor protein [Bordetella bronchiseptica 253]
gi|33575057|emb|CAE30520.1| probable two-component sensor protein [Bordetella bronchiseptica
RB50]
gi|408770514|emb|CCJ55308.1| probable two-component sensor protein [Bordetella bronchiseptica
253]
Length = 781
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 18/257 (7%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
++E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IAEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 M--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
+ + PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 594 LGSGGTRVELWLPSPAP 610
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|448508138|ref|ZP_21615372.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 9100]
gi|448518396|ref|ZP_21617473.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 10118]
gi|445697715|gb|ELZ49775.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 9100]
gi|445704977|gb|ELZ56881.1| multi-sensor signal transduction histidine kinase [Halorubrum
distributum JCM 10118]
Length = 552
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSL 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP +
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP-------GI 488
Query: 544 TPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 602
P E +F + D F GL + E+ E++G V + A +GGTR E
Sbjct: 489 DPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTRFE 539
Query: 603 L 603
Sbjct: 540 F 540
>gi|427429435|ref|ZP_18919465.1| histidine kinase [Caenispirillum salinarum AK4]
gi|425880164|gb|EKV28863.1| histidine kinase [Caenispirillum salinarum AK4]
Length = 450
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVS 517
DL EA +P+A + + + ++A ALR+A+SNL++ A+ + GG+ +V+
Sbjct: 315 DLAEAGQPVACAE---------APTCVMACRPQALRRAVSNLVQNAV---RYGGRA-VVT 361
Query: 518 AAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL 575
A L+ +DDDGP + M PF + T GL++ +
Sbjct: 362 LERAADAVLIHVDDDGPGIAEDQMERVFRPF----YRVEASRGRATGGVGLGLSIVASVA 417
Query: 576 ESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
++G VR+ A GG R L LP
Sbjct: 418 HAHGGDVRL-------ANRAGGGLRASLRLP 441
>gi|398852979|ref|ZP_10609617.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
gi|398242433|gb|EJN28048.1| signal transduction histidine kinase [Pseudomonas sp. GM80]
Length = 461
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|418058181|ref|ZP_12696160.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens DSM 13060]
gi|373568296|gb|EHP94246.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens DSM 13060]
Length = 861
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTP 545
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M +M +L P
Sbjct: 751 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 810
Query: 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 811 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 858
Query: 606 PS 607
P+
Sbjct: 859 PA 860
>gi|163851983|ref|YP_001640026.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163663588|gb|ABY30955.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 846
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTP 545
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M +M +L P
Sbjct: 736 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 795
Query: 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 796 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 843
Query: 606 PS 607
P+
Sbjct: 844 PA 845
>gi|403743092|ref|ZP_10952807.1| signal transduction histidine kinase with CheB and CheR activity
[Alicyclobacillus hesperidum URH17-3-68]
gi|403123060|gb|EJY57239.1| signal transduction histidine kinase with CheB and CheR activity
[Alicyclobacillus hesperidum URH17-3-68]
Length = 1199
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+P N+ DV+ D+ + A + Q ++ + L++ E L+Q NL++ A+
Sbjct: 1045 FKPANLVDVIRDVVMLLETQALLNQVEIVFETAMEELMMECVENQLKQVFINLVKNAIEA 1104
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG V + A D L+ + D G + L G ++ +D T
Sbjct: 1105 MPNGGVVSVHLALTADEDVLLTVQDQGVGI--PEEKLARLGEPFYT---TKDKGTG---L 1156
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP-SPAPLSD 613
GL V+ +++E +G +R S A G GT E+ LP +P +D
Sbjct: 1157 GLMVSFKIVEQHGGTIRYRS------APGQ-GTTAEIRLPLHKSPTAD 1197
>gi|333892582|ref|YP_004466457.1| sensor signal transduction histidine kinase [Alteromonas sp. SN2]
gi|332992600|gb|AEF02655.1| periplasmic sensor signal transduction histidine kinase
[Alteromonas sp. SN2]
Length = 447
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 22/121 (18%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP--DMHYMMHSLTPF-- 546
AL QAL N+I A + G VE VS + A++ + D GP D + L PF
Sbjct: 341 ALHQALENIIGNACKYSSRGELVE-VSTEKRSNTAVITVRDHGPGVDSEEIEKLLQPFYR 399
Query: 547 -GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
G+++ + F GL++A++ +E + +++ P GG RVE+ L
Sbjct: 400 AGNQMHTS---------GFGLGLSIAKKAIEKHSGRLQMTRP-------ADGGLRVEIAL 443
Query: 606 P 606
P
Sbjct: 444 P 444
>gi|170746955|ref|YP_001753215.1| integral membrane sensor signal transduction histidine kinase
[Methylobacterium radiotolerans JCM 2831]
gi|170653477|gb|ACB22532.1| integral membrane sensor signal transduction histidine kinase
[Methylobacterium radiotolerans JCM 2831]
Length = 548
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 18/123 (14%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
+RQ + +L++ AL +VE+ AA P + I DDGP +L E F
Sbjct: 415 MRQTVESLVDNALRHAAGLTRVEVALAAGPGPVGRITITDDGPGFGAPEEALF----ERF 470
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSG----GTRVELWLPS 607
F GL +AR ++E +G +R LG G G RV L +P+
Sbjct: 471 KRGTGAGPDETGFGIGLALARWIVEQHGGTIR----------LGPGPDGRGARVTLDIPA 520
Query: 608 PAP 610
P
Sbjct: 521 CDP 523
>gi|218530735|ref|YP_002421551.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens CM4]
gi|218523038|gb|ACK83623.1| PAS/PAC sensor signal transduction histidine kinase
[Methylobacterium extorquens CM4]
Length = 841
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTP 545
+E ++RQA ++ A+ T+ GG+V + + A G+ + + D G M +M +L P
Sbjct: 731 DERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGMTEDELMSALEP 790
Query: 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
FG++L V + F GLT+ + L+E+ R+ S + D GT VE+
Sbjct: 791 FGADL---GAVPEGDEKGF--GLTLTKALVEANRGRFRISS--RKDE-----GTLVEMLF 838
Query: 606 PS 607
P+
Sbjct: 839 PA 840
>gi|386399068|ref|ZP_10083846.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM1253]
gi|385739694|gb|EIG59890.1| histidine kinase,Response regulator receiver domain
protein,histidine kinase [Bradyrhizobium sp. WSM1253]
Length = 581
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + ++ +++ + +R+A+ NLI A+ +
Sbjct: 429 PVDVAALVKEVAEANQPLAVNKQQAISVTA-PVNIVTMCDTDRIREAIDNLISNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GGK+ ++ + GD +V + D+G +
Sbjct: 488 IGGKIGVI-VSHEGGDTIVRVSDEGAGL 514
>gi|416959821|ref|ZP_11936193.1| signal transduction histidine kinase with CheB and CheR activity
[Burkholderia sp. TJI49]
gi|325522177|gb|EGD00827.1| signal transduction histidine kinase with CheB and CheR activity
[Burkholderia sp. TJI49]
Length = 1219
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P + + ++ + E+ RP+A ++ + + L+ +V+ + L+Q SNLI AL T
Sbjct: 925 KPADFAAIVQTVVESNRPVAARKEISLATAGLNARAVVSGDARRLQQVASNLIGNALKFT 984
Query: 508 QVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSELFSENMVED-NMTWNFV 565
GG+VE+ A G L + + D+G + P+ LF M D + T N+
Sbjct: 985 PQGGRVEV--ALTRLGTMLELSVTDNGIGVSAEQ---LPY---LFDRFMQSDTSRTRNYG 1036
Query: 566 A---GLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPS 607
GL++ + L+ ++G V T ++ G G GTR+ + LPS
Sbjct: 1037 GLGLGLSIVKHLVTAHGGTV-------TASSEGEGRGTRLTVRLPS 1075
>gi|289674705|ref|ZP_06495595.1| sensor histidine kinase, partial [Pseudomonas syringae pv. syringae
FF5]
Length = 406
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + +L+ E L + LSNLI
Sbjct: 258 IAEGGAQQLDLSQLARELGMAMAPLAH--SRGVALALEADEPVLLRGEPTLLNELLSNLI 315
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V ++ AP ++ ++DDGP +
Sbjct: 316 DNALAHTAPGGNV-VLRVYAP---GVLEVEDDGPGI 347
>gi|402825046|ref|ZP_10874369.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas sp. LH128]
gi|402261432|gb|EJU11472.1| integral membrane sensor signal transduction histidine kinase
[Sphingomonas sp. LH128]
Length = 454
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G R +++++ ++ E V+P+A + ++V + ++ LV + L Q L N++E
Sbjct: 296 RRAGFRRFDLAELATEIVEMVQPVAQERGQRVLMERADEAKLVG-DRQLLSQLLVNMLEN 354
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFG 547
A+ T G ++ VS A A ++V+ DDGP + H + FG
Sbjct: 355 AVRHTPSGTRIR-VSIAREAQAVVLVVTDDGPGIPASQREHVMRRFG 400
>gi|340777144|ref|ZP_08697087.1| integral membrane sensor signal transduction histidine kinase
[Acetobacter aceti NBRC 14818]
Length = 457
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+EL + +++ V+ LRQ +SN+++ AL+ T G + VS AG AL+ + D+GP +
Sbjct: 331 AELVRHIMIHVDVVLLRQLVSNILDNALLHTPAGTSI-TVSVRKTAGRALLCVADNGPGV 389
Query: 537 -HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
++H L E F + T G+++AR + E +G
Sbjct: 390 PAALLHKL----PERFFR-LDRSRTTPGTGLGISLARAIAERFG 428
>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
Length = 571
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL 492
L L+ L+Q + + N+++ + F+ V+ A ++ ++ L E +L + V+ L
Sbjct: 405 LELSKLEQKQVPMNMQEVNLTEAVLSTFQLVKQTADEKEMKLNLIE-EDTLFITVDSSRL 463
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+Q L+NLI A++ TQ G+V V+ A++++ D+G
Sbjct: 464 KQILANLINNAVVYTQDSGEV-TVTIRKENNQAVILVSDNG 503
>gi|398839721|ref|ZP_10596966.1| PAS domain S-box [Pseudomonas sp. GM102]
gi|398112351|gb|EJM02214.1| PAS domain S-box [Pseudomonas sp. GM102]
Length = 1378
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+++ VL D+ V L VEL S+ L+V + L Q + NL+ AL T
Sbjct: 1087 VDLASVLRDIHTVV--LNDRHSTTVELQVPSEPLMVCADPTRLEQIIWNLVNNALKFTPP 1144
Query: 510 GGKVEIVSAAAPAGD-ALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
G V+++ A AGD A + + D+G + ++ H FG +E ++
Sbjct: 1145 NGHVQLI--AQRAGDMARLDVKDNGIGIAAEHLEHVFDLFGQ---AETQHANHQREGLGI 1199
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP---------SPAPLSDLNGK 617
GL++ R+L E+ V V SP +G G T ++LP + A + D++G+
Sbjct: 1200 GLSLVRQLTEAQRGTVEVSSP-----GVGEGCT-FSVYLPLAITEGKTQTEAQIDDVSGR 1253
>gi|186470766|ref|YP_001862084.1| histidine kinase [Burkholderia phymatum STM815]
gi|184197075|gb|ACC75038.1| histidine kinase [Burkholderia phymatum STM815]
Length = 524
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
L Q NL++ A+ T GG++EI A G V + D+G + P ELF
Sbjct: 271 LAQVFGNLLDNAVKYTLDGGRIEI-DVTAEEGLVTVAVSDNGTG---IAPEELPEIFELF 326
Query: 552 SE-NMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
S+ N D GL+V R L+ +G VR S A LG GTR+ + LP+
Sbjct: 327 SQSNRALDRAQGGLGIGLSVVRSLIGMHGGTVRAES-----AGLGL-GTRIVVTLPT 377
>gi|77164199|ref|YP_342724.1| Signal transduction histidine kinase [Nitrosococcus oceani ATCC
19707]
gi|76882513|gb|ABA57194.1| signal transduction histidine kinase [Nitrosococcus oceani ATCC
19707]
Length = 459
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ +L ++ E A RQV S S + EP LR AL N++ A+ T
Sbjct: 304 PVDVAALLAEVAENADFEARAANRQVRTINNSLSATIEANEPLLRSALENVVRNAIRYTD 363
Query: 509 VGGKVEIVSAAAPA--GDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
V+I P G LV + D GP + M LT D + +
Sbjct: 364 ENTSVDITLQHDPEHPGWLLVQVRDHGPGVPDDM--LTKLFEPFVRVGDARDRESGGYGL 421
Query: 567 GLTVARELLESYGCVV 582
GL +A + +G V+
Sbjct: 422 GLAIAERAIHLHGGVI 437
>gi|374578495|ref|ZP_09651591.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM471]
gi|374426816|gb|EHR06349.1| signal transduction histidine kinase [Bradyrhizobium sp. WSM471]
Length = 432
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 447 IRPCNVSDVLGDLFE---AVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEG 502
+RP + D+L + + + PLA +Q +VE +EL ++ +L+A + L + NLIE
Sbjct: 267 VRPDTLVDLLPIILQVADGLEPLARERQVEVE-TELPETPVLIAGDREELLRLFENLIEN 325
Query: 503 ALMRTQVGGK--VEIVSAAAPAG--DALVVIDDDGPDM 536
AL GG+ V ++S AAP G + V++ D GP +
Sbjct: 326 ALKYGASGGRIIVSLISGAAPDGTQEIRVLVRDFGPGI 363
>gi|198276200|ref|ZP_03208731.1| hypothetical protein BACPLE_02389 [Bacteroides plebeius DSM 17135]
gi|198271012|gb|EDY95282.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides plebeius DSM 17135]
Length = 842
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 37/188 (19%)
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEE 489
+M + P+A P ++L D++ + PLA +Q Q++ E L ++L + +
Sbjct: 399 KMDLHPVAFNP-----------HELLTDIYNSFLPLAEKKQLQLDFKEKLPEALTLEGDP 447
Query: 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV-IDDDGPDM-----HYMMHSL 543
+RQ + NL+ AL T GG I A G+ V + D G M +
Sbjct: 448 FRIRQIVENLLSNALKFTAAGG---ITLQAEYHGNQFVFSVSDTGCGMTASEQERIFKEF 504
Query: 544 TPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT-RVE 602
T S E F GL++ R+L+E ++ ++A G G T +V
Sbjct: 505 TRLSSAQGQE---------GFGLGLSITRKLVE------LLLGRIDIESAPGKGSTFKVS 549
Query: 603 LWLPSPAP 610
+ LPS +P
Sbjct: 550 MPLPSISP 557
>gi|163749893|ref|ZP_02157138.1| sensor histidine kinase [Shewanella benthica KT99]
gi|161330407|gb|EDQ01386.1| sensor histidine kinase [Shewanella benthica KT99]
Length = 439
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
++ ++ D+ DLFE +A + Q+++ LS + + V ++ L QAL NL++ A+
Sbjct: 299 LQDLSIKDMCEDLFEMAEAMAELNQQKLLLST-GEDIKVTGDKYLLFQALFNLVDNAIKY 357
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
G +EIV A + I D+GP +
Sbjct: 358 AGDGATIEIVQAGRE-----IQIRDNGPGI 382
>gi|448484831|ref|ZP_21606248.1| multi-sensor signal transduction histidine kinase [Halorubrum arcis
JCM 13916]
gi|445819586|gb|EMA69426.1| multi-sensor signal transduction histidine kinase [Halorubrum arcis
JCM 13916]
Length = 552
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSL 543
+VA + LRQAL NL A+ T G V + A P GD V DDGP +
Sbjct: 439 VVAADRSRLRQALENLFGNAV--THAGPDVAVTVGALPDGDGFYVA-DDGP-------GI 488
Query: 544 TPFGSE-LFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVE 602
P E +F + D F GL + E+ E++G V + A +GGTR E
Sbjct: 489 DPADREAVFEAGVTSDPDGTGF--GLKIVGEVAEAHGWTVEL-------AESETGGTRFE 539
Query: 603 L 603
Sbjct: 540 F 540
>gi|426408184|ref|YP_007028283.1| periplasmic sensor signal transduction histidine kinase
[Pseudomonas sp. UW4]
gi|426266401|gb|AFY18478.1| periplasmic sensor signal transduction histidine kinase
[Pseudomonas sp. UW4]
Length = 462
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|421467781|ref|ZP_15916370.1| GHKL domain protein, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400233230|gb|EJO62798.1| GHKL domain protein, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 617
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP V D++ E+V+P +++Q+ + + +++ ++ L Q L NL++ A +
Sbjct: 320 RPVTVRDLVARGVESVQPKLATREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFS 379
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GG+++I + A+ VID + S+ +LF + T F G
Sbjct: 380 PRGGRIDISARVEGPVVAIRVIDRGVGIAPGALESIF----DLFEQEGAAHRPTDGFGLG 435
Query: 568 LTVARELLESYGCVV 582
L + R +E +G ++
Sbjct: 436 LAICRSFVELHGGMI 450
>gi|398958787|ref|ZP_10677752.1| signal transduction histidine kinase [Pseudomonas sp. GM33]
gi|398146006|gb|EJM34775.1| signal transduction histidine kinase [Pseudomonas sp. GM33]
Length = 462
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|301062848|ref|ZP_07203441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
proteobacterium NaphS2]
gi|300443048|gb|EFK07220.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
proteobacterium NaphS2]
Length = 444
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 407 RENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466
RE G+ ++ S + L++ D+ + L++ + +V + + DL+E V
Sbjct: 257 REALGDCMEESERVLTMLNTLMDV--AEAETGVMRLQKTALSLSHVIEDVVDLYEIV--- 311
Query: 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526
A Q V L+ L +++++ + L+Q L+NL++ AL GG V + S A A +A+
Sbjct: 312 AEEQNTNVHLN-LDKTIMIQADRTRLQQVLANLLDNALKYGGKGGTVSVESMAEGA-EAV 369
Query: 527 VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ + D G M + ++ L+ + GL+ + ++E++G V+V S
Sbjct: 370 ISVSDKG--MGIAENEISRIWERLYRGDYSRSRRGLGL--GLSFVKAIVEAHGGSVQVKS 425
>gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 576
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P ++ ++L + VR A +Q+ Q++L + L+ ++ +Q + NL+ A+
Sbjct: 389 LEPVDLDELLSNSLLIVREQAALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKF 448
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGP----------DMHYMMHSLTPFGSELFSENM- 555
+Q GG V + P A V++ D P + H++ S++ G + +M
Sbjct: 449 SQPGGWVILAVRQVPRSQA-GVLEGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMN 507
Query: 556 --------VEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
++ + F GL + ++L E +G V V A++ GTR +W
Sbjct: 508 KLFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHGGCVAV-------ASVKDLGTRFVVW 560
Query: 605 LPSPAPLSD 613
LP P S+
Sbjct: 561 LPIRPPASE 569
>gi|162147060|ref|YP_001601521.1| histidine kinase sensory protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209544122|ref|YP_002276351.1| integral membrane sensor signal transduction histidine kinase
[Gluconacetobacter diazotrophicus PAl 5]
gi|161785637|emb|CAP55208.1| putative histidine kinase sensory protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531799|gb|ACI51736.1| integral membrane sensor signal transduction histidine kinase
[Gluconacetobacter diazotrophicus PAl 5]
Length = 592
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+ ++ +SL V E L Q L NLI A+ + G++ + + A G + + D+G
Sbjct: 460 ISVTAADRSLTVQAVEDRLVQVLRNLIGNAISFSPPDGRITLSAVPAAGGMVDIAVADEG 519
Query: 534 PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
P + L +SE +N + GL+++R+++E+ +R + TD
Sbjct: 520 PGIPAA--KLNSIFDRFYSERPTTENFGQHSGLGLSISRQIVEALKGTIRAENRVGTDGR 577
Query: 594 LGSGGTRVELWLP 606
+ G R + LP
Sbjct: 578 V--VGARFVVTLP 588
>gi|452965571|gb|EME70592.1| putative sensor histidine kinase [Magnetospirillum sp. SO-1]
Length = 544
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 14/164 (8%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++ + E +R A ++ + + L+Q L V+ LRQ L NL+ A+ T
Sbjct: 388 PTRIAPLVEECVELIRGPAGIKTIALATTGLNQDLEAVVDSRRLRQILLNLLSNAVKFTP 447
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG+V IV + A + ++D G M + +LTPFG E
Sbjct: 448 EGGRV-IVEVESDAHQLSLTVNDTGIGMTPEEIAVALTPFGQNPSRLTSTETGTGL---- 502
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
GL +++ L E +G + + A++ GT V + LP P
Sbjct: 503 GLPLSKRLAEMHGGSIAI-------ASIPGRGTTVTVSLPLSPP 539
>gi|398820399|ref|ZP_10578925.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
gi|398228936|gb|EJN15032.1| signal transduction histidine kinase [Bradyrhizobium sp. YR681]
Length = 449
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGS 548
ALR+ L+N+I+ AL G+ V A G +V IDD+G + L PF
Sbjct: 342 ALRRILANIIDNALAY----GQAAHVRTALKDGAFVVSIDDEGQGIPVDQRQTVLEPFHR 397
Query: 549 ELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
S N T GL V R L+E++G + + +A GGTRV + LP
Sbjct: 398 LEKSRN----RATGGAGLGLAVVRNLVEAHGGTIEI-------SAAPGGGTRVNVTLP 444
>gi|339489118|ref|YP_004703646.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S16]
gi|338839961|gb|AEJ14766.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida S16]
Length = 459
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVLAP---AVLEVEDDGPGI 402
>gi|398892608|ref|ZP_10645620.1| signal transduction histidine kinase [Pseudomonas sp. GM55]
gi|398185181|gb|EJM72597.1| signal transduction histidine kinase [Pseudomonas sp. GM55]
Length = 462
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|332670570|ref|YP_004453578.1| integral membrane sensor signal transduction histidine kinase
[Cellulomonas fimi ATCC 484]
gi|332339608|gb|AEE46191.1| integral membrane sensor signal transduction histidine kinase
[Cellulomonas fimi ATCC 484]
Length = 367
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVID-DDGPDMHYMMHSLTPFGSELFS 552
Q L NL+ AL T GG++ + +A G LVV D +G ++ H F +
Sbjct: 262 QVLDNLLANALRHTPSGGQITVSAARGDGGVRLVVTDTGEGIAAEHLPHVFDRF----YR 317
Query: 553 ENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
D + GL +++ L+E++G +R S
Sbjct: 318 VGTARDRASGGSGIGLAISKALVEAHGGSIRAAS 351
>gi|410658941|ref|YP_006911312.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. DCA]
gi|409021296|gb|AFV03327.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. DCA]
Length = 601
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
S +KL+ L + + E+ L++A + +G + N+++V+ L+ ++ A+
Sbjct: 421 SDSKLKTEYMDLMITEIDRANEILTDFLSVAKVSPDGTKEENINNVINRLYPMLQADAYN 480
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
+++ L EL+ + + E +RQ + NL+ AL T GKV I + A G L +
Sbjct: 481 SGKELIL-ELNDVPSINLNESEIRQLILNLVRNALEETAEKGKVYIKTYQAEEGIVLAIK 539
Query: 530 D 530
D
Sbjct: 540 D 540
>gi|406974114|gb|EKD97309.1| hypothetical protein ACD_23C00974G0002 [uncultured bacterium]
Length = 467
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++++ +GDL E LA +++ + LS LS + + LR+A+SNL+ AL T
Sbjct: 319 PIDLAEEIGDLLEYYDVLA--EEKAIALS-LSGGGQIVGDRLMLRRAVSNLLSNALRHTP 375
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GKV + G LV +++ G D+
Sbjct: 376 NEGKVTVRVEKNSEGGILVSVENTGSDI 403
>gi|398912902|ref|ZP_10656201.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
gi|398181613|gb|EJM69168.1| signal transduction histidine kinase [Pseudomonas sp. GM49]
Length = 462
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R + L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGIALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|332296827|ref|YP_004438749.1| integral membrane sensor signal transduction histidine kinase
[Treponema brennaborense DSM 12168]
gi|332179930|gb|AEE15618.1| integral membrane sensor signal transduction histidine kinase
[Treponema brennaborense DSM 12168]
Length = 624
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 23/165 (13%)
Query: 437 LALAPLKQNGI----RPCNVSDVLGDLFEAVRPLA---HMQQRQVELSELSQSLLVAVEE 489
L L+ L+Q G + V + + D+ + + A H+ RQ + E ++ + +AV E
Sbjct: 438 LTLSKLEQTGFTLATQQTTVQECVADVLLSQQIAADAKHIAFRQTYVPE-NEPIRIAVNE 496
Query: 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL---------VVIDDDGPDM--HY 538
QAL N++ A+ G V + + PA + +VI+DDG + Y
Sbjct: 497 GLFEQALGNIVNNAVKYCPDGSTVSVSAERIPAQEGTAARRYPAVKIVIEDDGAGIPEEY 556
Query: 539 MMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVR 583
F F + T GL++AR ++E +G +R
Sbjct: 557 RKRIFERF----FRVDKGRSRETGGTGLGLSIARHIVELHGGTIR 597
>gi|310823134|ref|YP_003955492.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309396206|gb|ADO73665.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 431
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 443 KQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEG 502
++ G +S+VL +L EA RP+A +++ S + L + + L Q +NL+E
Sbjct: 271 RKGGFERLCLSEVLENLVEAYRPVAEDHGQRLTAS-ICPKLFIQGDRSLLAQLFANLVEN 329
Query: 503 ALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
AL + G + + A G V + D GP +
Sbjct: 330 ALRHSGRGSAIHLGLEAGADGGFTVTVSDTGPGI 363
>gi|397693048|ref|YP_006530928.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|421522762|ref|ZP_15969402.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
gi|397329778|gb|AFO46137.1| integral membrane sensor signal transduction [Pseudomonas putida
DOT-T1E]
gi|402753255|gb|EJX13749.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida LS46]
Length = 459
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVSLALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|182413629|ref|YP_001818695.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177840843|gb|ACB75095.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1085
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALM 505
+RP + +L D +RP A Q+R ++EL+ V + L+Q N+++ A+
Sbjct: 776 LRPVSAEQILQDALSVIRPDAE-QKRITLVTELTAHRTTVRGDAVRLQQVFWNVLKNAVK 834
Query: 506 RTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDM 536
T GG++ + SA GD L V + D+G M
Sbjct: 835 FTPAGGRITVTSANLRGGDTLRVAVRDNGIGM 866
>gi|422303434|ref|ZP_16390785.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9806]
gi|389791582|emb|CCI12604.1| Two-component sensor histidine kinase [Microcystis aeruginosa PCC
9806]
Length = 418
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 283 NICRSLAMAYVMD-QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE 341
I ++LA+A V+D Q WQ R+ + QIR PL++++T K+L + E
Sbjct: 134 KITQTLALACVLDRQLGEERYYRQWQRQ-RLDTFLHQIRNPLTALKTFGKLLLKRLLAEE 192
Query: 342 ISYDIVEDIMVQGDRLRGTLQELQDAV 368
+ + ++ + DR+R + E + +
Sbjct: 193 ANDPAITGMLRESDRVRDLIAEFEGQI 219
>gi|340788024|ref|YP_004753489.1| two-component system sensor protein [Collimonas fungivorans Ter331]
gi|340553291|gb|AEK62666.1| two-component system sensor protein [Collimonas fungivorans Ter331]
Length = 634
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 15/142 (10%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELS--QSLLVAVEEPALRQALSNLIEGAL 504
++P ++ +L + V PLA QR++ L +L + L V + L Q L NL+ A+
Sbjct: 339 VQPIQLASLLAEALTLVAPLA--AQRKIHLDQLVCPEQLAVLADRQRLMQVLLNLLSNAI 396
Query: 505 MRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHS--LTPFGSELFSENMVEDNMT 561
G+V I AA GD + V I+DDGP + + TPF L +E +
Sbjct: 397 KYNSPNGQVRIQVAA--YGDTVSVAIEDDGPGLSADLTERLFTPF-DRLGAERGTSEGAG 453
Query: 562 WNFVAGLTVARELLES-YGCVV 582
GL V++ L+++ +G ++
Sbjct: 454 L----GLAVSKSLMQAMHGDII 471
>gi|171913996|ref|ZP_02929466.1| response regulator receiver sensor signal transduction histidine
kinase [Verrucomicrobium spinosum DSM 4136]
Length = 383
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 22/148 (14%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++ ++L + P+A +Q + L S+ + + + L QAL N++ A+ +
Sbjct: 213 PIDLKEILTSVGARHEPIAAAKQINIVLELASRPVTIKGDHEMLEQALENVVSNAIKFSP 272
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGP-----DMHYMMH-----SLTPFGSELFSENMVED 558
VG + + + G A+ + D GP DM M S P G E +
Sbjct: 273 VGTTITLRAKTGTTGFAVCEVADQGPGFTEDDMSRMFRRYGRLSARPTGGEPSTG----- 327
Query: 559 NMTWNFVAGLTVARELLESYGCVVRVIS 586
GL++ + L+E G +R++S
Sbjct: 328 -------LGLSIVKRLIERMGGTIRMVS 348
>gi|390457312|ref|ZP_10242840.1| signal transduction histidine kinase LytS [Paenibacillus peoriae
KCTC 3763]
Length = 1047
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V +E LRQ + NL+ A+ T G +++V++ A G ++ ++D G + H++
Sbjct: 556 VQADENRLRQIMYNLVSNAIKHTD-KGSIKVVASVAQ-GTVIISVEDTGTGIPKDKHAVI 613
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
E + +D T GL ++R+L+E G +RV W GTR+
Sbjct: 614 FEYFEQLDGPLPKDGYT-GMGVGLYISRKLVERMGGEIRV--DWSEVGI----GTRMMFT 666
Query: 605 LPSPAPLSD 613
LPS + D
Sbjct: 667 LPSAVQVPD 675
>gi|383643984|ref|ZP_09956390.1| multi-sensor hybrid histidine kinase [Sphingomonas elodea ATCC
31461]
Length = 728
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 481 QSLLVAVEEPALRQALSNLIEGAL--MRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538
++ VA ++ ++Q L NL+ A+ +R+ G + I SAA P G + + D+GP +
Sbjct: 605 EAAWVAADKVQVQQVLLNLLRNAVQAVRSHPAGHIVIASAAQPDGTVQLTVTDNGPGIGA 664
Query: 539 MMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYG 579
PF V GL++ R ++ESYG
Sbjct: 665 PEEVFLPF---------VSSRPASGLGLGLSICRTIVESYG 696
>gi|444912071|ref|ZP_21232237.1| hypothetical protein D187_03990 [Cystobacter fuscus DSM 2262]
gi|444717293|gb|ELW58126.1| hypothetical protein D187_03990 [Cystobacter fuscus DSM 2262]
Length = 493
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ ++G RP+A Q Q+E + +LV ++ + QA+SN+I A+
Sbjct: 336 PVDLNALVGRCIGRHRPIARQQGVQLEHAVPEPPVLVLGDDTLIEQAVSNVIYNAVRYNA 395
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSL 543
GG V +V P + + DDGP + H + H L
Sbjct: 396 RGGHVAVVLEREPGATFRLRVLDDGPGIPEHELPHIL 432
>gi|410661929|ref|YP_006914300.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. CF]
gi|409024285|gb|AFV06315.1| Signal transduction histidine kinase nitrogen specific-like protein
[Dehalobacter sp. CF]
Length = 601
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 410 SGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHM 469
S +KL+ L + + E+ L++A + +G + N+++V+ L+ ++ A+
Sbjct: 421 SDSKLKTEYMDLMITEIDRANEILTDFLSVAKVSPDGTKEENINNVINRLYPMLQADAYN 480
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
+++ L EL+ + + E +RQ + NL+ AL T GKV I + A G L +
Sbjct: 481 SGKELIL-ELNDVPSINLNESEIRQLILNLVRNALEETAEKGKVYIKTYQAEEGIVLAIK 539
Query: 530 D 530
D
Sbjct: 540 D 540
>gi|256393252|ref|YP_003114816.1| histidine kinase [Catenulispora acidiphila DSM 44928]
gi|256359478|gb|ACU72975.1| histidine kinase [Catenulispora acidiphila DSM 44928]
Length = 400
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+++ + ++ EA RP + R + L + L ++ +LR+ +S L++ A+ T
Sbjct: 256 DLATLAAEVIEAERP--RLGSRVLVLHTVGDHLAISGARSSLRRMISTLVDNAISHTGPT 313
Query: 511 GKVEIVSAAAPAGDALVVID--DDGPDMHYMMHSLTPFGSELFSENMVEDN--MTWNFVA 566
G++EI + PAG A+V ++ DDG P + E + +F
Sbjct: 314 GRIEI--SLRPAGRAIVELEVTDDGT-------GFDPADRDRIFERFAQSGSPAAHHFGL 364
Query: 567 GLTVARELLESYGCVVRVIS 586
GL +ARE+ +G +R +
Sbjct: 365 GLALAREIATDHGGTIRAVG 384
>gi|408826444|ref|ZP_11211334.1| two-component system sensor kinase [Streptomyces somaliensis DSM
40738]
Length = 472
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP-ALRQALSNLIEGALM 505
+R +V ++ + A RPLA ++R V L+ + + A +P AL AL +I+ AL
Sbjct: 313 LRLTDVGELAAERVAAWRPLA--EERGVRLTGCGPAAVTAWADPVALSSALDAVIDNALK 370
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
T G V V AAA + +V+ D GP + L G + ++
Sbjct: 371 FTPAGEAV-TVGAAASGDTSTIVVADRGPGL--TDEELDRVGDRFWRSGRHQNVKGSGL- 426
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
GL++ R LL + G + T A G RV L LP AP
Sbjct: 427 -GLSICRSLLTAGGGSI-------TFAHNDPHGLRVTLALPRTAP 463
>gi|418062575|ref|ZP_12700348.1| histidine kinase, partial [Methylobacterium extorquens DSM 13060]
gi|373563884|gb|EHP90039.1| histidine kinase, partial [Methylobacterium extorquens DSM 13060]
Length = 158
Score = 39.3 bits (90), Expect = 5.5, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
R C V L + A++ L + + E++ + ++L +E L + L NL++ A R
Sbjct: 14 RACPVGPALARIVGALKRLPEGESLRWEIA-VPENLAFPGDEGDLTEILGNLLDNA--RK 70
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
++ VS A G+ +V++DDGP M + G D G
Sbjct: 71 WAHRRIR-VSGGAEGGEHRLVLEDDGPGMSEAAIAGIARGRRW-------DETRPGTGFG 122
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609
+ +AR+L E+ G +R+ + + L GG RVE+ P PA
Sbjct: 123 IAIARDLAEAVGARMRL-----SRSEL--GGLRVEMRWPVPA 157
>gi|451946410|ref|YP_007467005.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
gi|451905758|gb|AGF77352.1| signal transduction histidine kinase [Desulfocapsa sulfexigens DSM
10523]
Length = 471
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++ ++L D+ A + R++E+ L++ + E L +AL N+I L T
Sbjct: 324 VHLHELLNDIVRDANFEAASRDRRIEIQNLNEITMFGSME-MLGRALENVIRNGLRYTTA 382
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
G VEI S + A +++ D GP + Y+ H PF +E+ D+ G
Sbjct: 383 GSAVEI-STSKGKDSATIIVRDHGPGVPQKYLEHIFKPFFR--VAESRGRDSGGTGI--G 437
Query: 568 LTVARE--LLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
L +A++ L+ G V R GG +E+ LP
Sbjct: 438 LAIAKQAILMHGGGIVARNAE---------EGGLIIEIHLP 469
>gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
T118]
gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
T118]
Length = 602
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P +S+ D + P A +V + V + L+Q + NL+ A+
Sbjct: 300 MEPVLLSEKFSDCRAMIDPQAQKAGIRVSFASFDSPCFVEADRTRLKQVIVNLLSNAIKY 359
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNF 564
+ GG VE+ + AG + + D GP + + + PF + L E ++
Sbjct: 360 NRAGGSVEVTCSTPAAGRIRISVIDTGPGLSDNKLAQLFQPF-NRLGQEAGTQEGTG--- 415
Query: 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW----LPSPAPLSDLNGKSNE 620
GL V + L+E G + V + +GS E W L +P P + ++G+++E
Sbjct: 416 -IGLVVCKRLVEMMGGEIGV----HSRVGIGS-----EFWFELKLAAPPP-TAVSGEASE 464
>gi|406574938|ref|ZP_11050653.1| putative two-component system sensor kinase [Janibacter hoylei
PVAS-1]
gi|404555635|gb|EKA61122.1| putative two-component system sensor kinase [Janibacter hoylei
PVAS-1]
Length = 864
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 38/172 (22%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQ--SLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
+GDL + +Q R V L + L+V + L Q +NL++ A+ + GG V
Sbjct: 190 VGDLLDDAIGETTLQGRDVALVADVEPGDLVVTGDRARLAQVTANLLDNAVRHSPSGGTV 249
Query: 514 EIVSAAAPAGDAL-VVIDDDGPDM-----HYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
+ + A AGDA + + DDGP + + H P E + G
Sbjct: 250 TLTARA--AGDAWTLTVADDGPGLTPERAERLFHRFGPGEDEGGGTGL-----------G 296
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGS-GGTRVELWL-------PSPAPL 611
L +A + +G +R ALG+ G R+EL L PSPAPL
Sbjct: 297 LAIAAWVASMHGGTIR---------ALGADAGARLELHLPLTPPAFPSPAPL 339
>gi|317130174|ref|YP_004096456.1| integral membrane sensor signal transduction histidine kinase
[Bacillus cellulosilyticus DSM 2522]
gi|315475122|gb|ADU31725.1| integral membrane sensor signal transduction histidine kinase
[Bacillus cellulosilyticus DSM 2522]
Length = 475
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Query: 456 LGDLFEAVRPLAHMQQR---QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGK 512
L +L+E+ R L Q+R ++E+ + Q L++ ++ + QAL NLIE A+ T G+
Sbjct: 329 LENLYES-RALMFDQKRIKHRIEIDKHCQELMIMMDSYRMEQALINLIENAIRHTPKDGE 387
Query: 513 VEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAR 572
+E++ + V + D G + H L + + + GL + +
Sbjct: 388 IELI-LRKDDNEVTVCVKDTGCGI--SKHDLPHIWERFYKADASRNRNDSGTGLGLAIVK 444
Query: 573 ELLESYGCVVRVISPWKTDAALGSGGT 599
E++E++ V V S LG G T
Sbjct: 445 EVVEAHQGKVDVYSK------LGKGTT 465
>gi|227548508|ref|ZP_03978557.1| two-component system sensor kinase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227079416|gb|EEI17379.1| two-component system sensor kinase [Corynebacterium lipophiloflavum
DSM 44291]
Length = 375
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+++ ++ + V V+ Q +SNL+ AL T GG+V I A AL+ + DDG
Sbjct: 240 LQVETITDTARVLVDRQRFGQVMSNLLSNALRHTPAGGQVRISVHRQGASTALIHVADDG 299
Query: 534 PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587
+ L + + + GLT+++ L+E++G + SP
Sbjct: 300 EGI--PPGQLGQIFERFYRGDAARNRDNGGAGIGLTISKALVEAHGGTLTATSP 351
>gi|255654717|ref|ZP_05400126.1| two-component sensor histidine kinase [Clostridium difficile
QCD-23m63]
gi|296449460|ref|ZP_06891240.1| two component sensor histidine kinase [Clostridium difficile NAP08]
gi|296878217|ref|ZP_06902229.1| two component sensor histidine kinase [Clostridium difficile NAP07]
gi|296261699|gb|EFH08514.1| two component sensor histidine kinase [Clostridium difficile NAP08]
gi|296430786|gb|EFH16621.1| two component sensor histidine kinase [Clostridium difficile NAP07]
Length = 468
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 474 VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+EL L++ ++V ++ L++A+SNLI+ ++ Q G ++++S + ++++DDG
Sbjct: 344 IELDILNEDIIVDADKKLLKRAISNLIQNSITHNQQGCNIKVIS-KSDLDFCYIIVEDDG 402
Query: 534 PDM 536
M
Sbjct: 403 KGM 405
>gi|56479486|ref|YP_161075.1| two-component sensor histidine kinase [Aromatoleum aromaticum EbN1]
gi|56315529|emb|CAI10174.1| Two-component sensor histidine kinase [Aromatoleum aromaticum EbN1]
Length = 456
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
Query: 462 AVRPLAHMQQRQVELSELSQSLLVAVE----EPALR-------QALSNLIEGALMRTQVG 510
AV PL R ++ + L +A+E +PA R + L NL++ A +
Sbjct: 315 AVLPLVESLVRVMKRLHAERDLEIAIEACAGDPAFRGEEQDFQEMLGNLVDNACKWAR-- 372
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTV 570
+VEI A ++V++DDGP + P +F + D T GL +
Sbjct: 373 HRVEI-RVAVERHQLVIVVEDDGPGLA------APERESVFGRGVRADERTPGSGLGLAI 425
Query: 571 ARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
R+L + YG VR+ D AL +GG RV L LP+
Sbjct: 426 VRDLAQLYGGDVRL------DPAL-AGGLRVVLTLPA 455
>gi|398993993|ref|ZP_10696924.1| signal transduction histidine kinase [Pseudomonas sp. GM21]
gi|398133498|gb|EJM22698.1| signal transduction histidine kinase [Pseudomonas sp. GM21]
Length = 461
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Query: 392 SHPESIRSQLSNNFSRENSGNKLQNSCKPLS-LDTPAKDIEMPMPPLALAPLKQNGIRPC 450
S PE+ RS L + L N L+ ++ A+ I + G +
Sbjct: 274 SEPETWRSTLETAAQGTDRLTHLANQLLSLARVENGARAI------------AEGGAQLL 321
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++S + +L A+ PLAH R V L+ E + + + E L + LSNL++ AL T
Sbjct: 322 DLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLVDNALAHTPS 379
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG V I+ AP A++ ++DDGP +
Sbjct: 380 GGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|331000586|ref|ZP_08324255.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Parasutterella excrementihominis YIT 11859]
gi|329571257|gb|EGG52953.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Parasutterella excrementihominis YIT 11859]
Length = 629
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
KVEI +A A DALV+I+D+GPDM + F S N+ + + GL +
Sbjct: 543 KVEIKNAGA---DALVIIEDNGPDM-----TDDQFAS---LRNLGQSSKKDGLGLGLAIV 591
Query: 572 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNG 616
RELLE+ G ++++ + SGG R L P L D +G
Sbjct: 592 RELLEANGGSLKLVR-------IPSGGLRCIASL--PIALEDKDG 627
>gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
Length = 1111
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N++D + + + P A + ++ L V+E LR AL NLI AL T+
Sbjct: 956 PLNLADEVAEATDLFEPQALTEGIDLQGETAEGPLWARVDEGGLRIALQNLISNALKYTE 1015
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG V V A D + ++D G M ++ PF E SE T+
Sbjct: 1016 EGGTVR-VRAGRRGDDVALEVEDTGVGMDPDHVPELFEPFRQE--SEGT---GRTYEGTG 1069
Query: 567 -GLTVARELLESYGCVVRV 584
GL V ++ +E G + V
Sbjct: 1070 LGLAVTKQAIEQMGGTIAV 1088
>gi|410648254|ref|ZP_11358668.1| sensor histidine kinase [Glaciecola agarilytica NO2]
gi|410132273|dbj|GAC07067.1| sensor histidine kinase [Glaciecola agarilytica NO2]
Length = 449
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMHSLTPF-- 546
AL QAL N+I A + G V+I +++ P L+ + D GP ++ M L PF
Sbjct: 342 ALLQALDNIIGNACKYSASGELVQITTSSRPTS-VLITVRDHGPGVNEEEMSKLLQPFYR 400
Query: 547 -GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605
G+E+ + F GL++A + + + +R+ +P GG +VE+ L
Sbjct: 401 AGNEMHTN---------GFGLGLSIALKAINKHKGELRMSTP-------DDGGLKVEIIL 444
Query: 606 PSPA 609
P A
Sbjct: 445 PKVA 448
>gi|404403326|ref|ZP_10994910.1| putative two-component system sensor kinase [Pseudomonas
fuscovaginae UPB0736]
Length = 461
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + E L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAHA--RGVALALEADDPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|392542046|ref|ZP_10289183.1| integral membrane sensor signal transduction histidine kinase
[Pseudoalteromonas piscicida JCM 20779]
Length = 171
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS- 542
++ ++ + QAL NLIE A+ + G +VEI S L+ I D+GP +
Sbjct: 56 ILTIQAALIEQALFNLIENAVTFSPDGERVEI-SLGETQQALLIFIQDNGPGIPVARQKE 114
Query: 543 -LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 585
T F S F +++ +D + GL+VAR ++ ++G +R++
Sbjct: 115 VFTAFSS--FRQSVSKDGGSG---LGLSVARGIIRAHGGDIRIL 153
>gi|389580437|ref|ZP_10170464.1| chemotaxis protein histidine kinase-like protein [Desulfobacter
postgatei 2ac9]
gi|389402072|gb|EIM64294.1| chemotaxis protein histidine kinase-like protein [Desulfobacter
postgatei 2ac9]
Length = 1068
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELS------ELSQSLLVAVEEPA---LRQALSNLIEG 502
++++L VR L+H + +EL EL +++L ++ +P +R ++ + IE
Sbjct: 401 IANILNKFTRVVRDLSHQLGKSIELEIEGKDVELDKTILESINDPLTHLVRNSVDHGIET 460
Query: 503 ALMRTQVG----GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMV-- 556
+ R ++G GK+ I+ A AG +VI DDG ++ + + L SE+ V
Sbjct: 461 PMEREEMGKNGTGKI-ILKAFHDAGQVNIVISDDGRGLNPDKIASSAIEKGLISESRVAE 519
Query: 557 ---EDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALG---------SGGTRVELW 604
+ F+ G + A+E+ + G V + ALG GT +++
Sbjct: 520 MSDKQKTELIFLPGFSTAKEVTDVSGRGVGMDVVVTNIEALGGIIELDSTPGQGTDIQIK 579
Query: 605 LP 606
LP
Sbjct: 580 LP 581
>gi|445497439|ref|ZP_21464294.1| putative sensor protein [Janthinobacterium sp. HH01]
gi|444787434|gb|ELX08982.1| putative sensor protein [Janthinobacterium sp. HH01]
Length = 610
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 23/159 (14%)
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
A + + P+ALAPL V++ L + PLA QQR V L +L V
Sbjct: 331 AGKLTLDRAPVALAPL---------VAEALALML----PLA--QQRSVTLRHEPTALAVM 375
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS--LT 544
+ LRQ L N++ + GG V VS + IDD GP + M T
Sbjct: 376 ADRQRLRQVLLNVVSNGIKYGAAGGTVS-VSCTQEGSVIAIHIDDSGPGIPAAMQDRLFT 434
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVR 583
P F +E T GL V++ L+++ +R
Sbjct: 435 P-----FDRLGIERGKTEGAGLGLAVSKSLMQAMHGDIR 468
>gi|389783798|ref|ZP_10195048.1| multi-sensor signal transduction histidine kinase [Rhodanobacter
spathiphylli B39]
gi|388434230|gb|EIL91178.1| multi-sensor signal transduction histidine kinase [Rhodanobacter
spathiphylli B39]
Length = 438
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 470 QQRQVELSE-------LSQSLLVAVEE-PAL---------RQALSNLIEGALMRTQVGGK 512
QQR V+L+E L Q L V VE+ PAL QAL NL+ A+ + GGK
Sbjct: 294 QQRSVDLAERIAAVARLEQRLAVRVEDGPALSLQADPDQLEQALINLLRNAVEASLDGGK 353
Query: 513 VEIVSAAAPAGD-ALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
E+V G+ L+ I DDGP + + PF F+ + GL +
Sbjct: 354 GEVVMRWRSEGERVLIEILDDGPGLPGSDNLFVPF----FTTKPGGSGI------GLALV 403
Query: 572 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
R++ E++ V + A G+ G +LWLP
Sbjct: 404 RQIAEAHEGGVSL------GAREGAPGAAAQLWLP 432
>gi|255034368|ref|YP_003084989.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254947124|gb|ACT91824.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1327
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+++D+L D+F RP A +Q Q +L +L V+E A ++ SNL+ A+ +
Sbjct: 900 TDINDLLNDVFATFRPAAEQKQLQYKLELPRITLQAFVDEEACKKITSNLVSNAIKYAES 959
Query: 510 GGKVEIVSAAAPAGDALVVID--DDGPDMHY 538
KV++ + + D L I+ +DGP + Y
Sbjct: 960 SVKVKL--SPFNSDDLLFHIEFTNDGPLIGY 988
>gi|363423294|ref|ZP_09311362.1| ATPase domain-containing protein [Rhodococcus pyridinivorans AK37]
gi|359731975|gb|EHK81004.1| ATPase domain-containing protein [Rhodococcus pyridinivorans AK37]
Length = 381
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG--- 533
S + S V V+ L Q L NL++ AL T GG V + S G A + + D G
Sbjct: 256 SRIDDSAAVTVDPDRLGQVLGNLLDNALRHTPNGGTVTVTSRRVDNGHAEIAVADTGDGI 315
Query: 534 -PDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 578
PD ++ H F + + D GLT+ R L+E++
Sbjct: 316 TPD--HLDHLFDRF----YRADAARDRRHGGSGIGLTITRALVEAH 355
>gi|170701119|ref|ZP_02892094.1| GntR domain protein [Burkholderia ambifaria IOP40-10]
gi|170133980|gb|EDT02333.1| GntR domain protein [Burkholderia ambifaria IOP40-10]
Length = 240
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 432 MPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLLVA 486
MP+ P A+A + +N P V+D + D EA V P+ + Q +LSE +
Sbjct: 1 MPVRP-AIAHIMKNV--PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE-----LE 52
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSLTP 545
+ +LR+ALS L ++R + G V + SA A A + PD + M ++L
Sbjct: 53 ISRASLREALSTLEALGMLRIRAGKGVYVESAQANAAHPWQFAEQSSPPDTYQMRYALEG 112
Query: 546 FGSELFSENMVEDNMTW 562
F + + + + +D++ W
Sbjct: 113 FAARMAAHVVTDDDIAW 129
>gi|26988154|ref|NP_743579.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida KT2440]
gi|24982887|gb|AAN67043.1|AE016333_4 sensor histidine kinase TctE, putative [Pseudomonas putida KT2440]
Length = 463
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 317 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 374
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 375 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 406
>gi|186472891|ref|YP_001860233.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia phymatum STM815]
gi|184195223|gb|ACC73187.1| integral membrane sensor signal transduction histidine kinase
[Burkholderia phymatum STM815]
Length = 443
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 470 QQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
Q +QV+L E + V + PAL L NL++ A+ T GG+V+ VS GD L+
Sbjct: 317 QSKQVDLGLEKVDDIEVIADVPALAVVLRNLVDNAVRYTPEGGRVD-VSVTRHGGDLLIE 375
Query: 529 IDDDGPDM--HYMMHSLTPF 546
+ D GP + ++ L PF
Sbjct: 376 VTDTGPGIPDDQLLRVLEPF 395
>gi|386013645|ref|YP_005931922.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
gi|313500351|gb|ADR61717.1| Integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida BIRD-1]
Length = 459
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|303258399|ref|ZP_07344402.1| putative His Kinase A (phosphoacceptor) domain protein
[Burkholderiales bacterium 1_1_47]
gi|302858845|gb|EFL81933.1| putative His Kinase A (phosphoacceptor) domain protein
[Burkholderiales bacterium 1_1_47]
Length = 604
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 512 KVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571
KVEI +A A DALV+I+D+GPDM + F S N+ + + GL +
Sbjct: 518 KVEIKNAGA---DALVIIEDNGPDM-----TDDQFAS---LRNLGQSSKKDGLGLGLAIV 566
Query: 572 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDLNG 616
RELLE+ G ++++ + SGG R L P L D +G
Sbjct: 567 RELLEANGGSLKLVR-------IPSGGLRCIASL--PIALEDKDG 602
>gi|154499724|ref|ZP_02037762.1| hypothetical protein BACCAP_03381 [Bacteroides capillosus ATCC
29799]
gi|150271322|gb|EDM98579.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 411
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S ++ D+ E A + + + LS + ++++ + + +A+ N+++ AL T+
Sbjct: 262 PENLSVLMQDVLERFETWAEREHKTITLSG-KEDVVLSCDALWVSEAIGNIVKNALEHTE 320
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG + + + +P + I DDG +H + + F FS ++ +
Sbjct: 321 NGGHIGVKWSQSPLMTQ-IEISDDGKGIHPEDLYNIFKRFYRSRFSSDVHGIGL------ 373
Query: 567 GLTVARELLESYGCVVRVISP 587
GL +A+ ++E++G + V S
Sbjct: 374 GLPLAKSIVEAHGGTISVTSS 394
>gi|134291092|ref|YP_001114861.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia vietnamiensis G4]
gi|134134281|gb|ABO58606.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia vietnamiensis G4]
Length = 386
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSN 498
A ++++G +V +L D E +P+A ++ + L S++ ++A +P L QA+ N
Sbjct: 229 AGVRRSGFVKSDVVTILSDAVEFYQPVAELRGISLTLLLCSETEVLAEVDPLLLAQAIGN 288
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS 542
LI+ AL Q G+VE VS V + DDGP + + S
Sbjct: 289 LIDNALKYAQDNGEVE-VSLCERDDRIEVTVSDDGPGIPFAERS 331
>gi|405355853|ref|ZP_11024965.1| Flagellar sensor histidine kinase FleS [Chondromyces apiculatus DSM
436]
gi|397091125|gb|EJJ21952.1| Flagellar sensor histidine kinase FleS [Myxococcus sp. (contaminant
ex DSM 436)]
Length = 547
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 438 ALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-------------SLL 484
A+ L++ IR + D++ DL + VRPL + R ++L EL + +L
Sbjct: 366 AVGMLEEEAIR---LEDIVRDLLDVVRPL-EPRPRPLQLGELVRRALGQMHGPPDAPTLR 421
Query: 485 VAVEEPA-----------LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533
+V+E A L+ A+++L+ A+ + GGKV + A G LVV +D+G
Sbjct: 422 FSVDEAAETPSLEGDETLLQLAVTHLVRNAVQASPAGGKVRMTVEPANGGVRLVV-EDEG 480
Query: 534 PDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 591
P + + PF F + GL + R ++ ++ VR S +
Sbjct: 481 PGIPDVDPQRVFQPF----FLTRANGRGL------GLAIVRRVVLAHEGSVRASSRPR-- 528
Query: 592 AALGSGGTRVELWLP 606
GG R ELWLP
Sbjct: 529 -----GGARFELWLP 538
>gi|148549506|ref|YP_001269608.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|395445157|ref|YP_006385410.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
gi|148513564|gb|ABQ80424.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida F1]
gi|388559154|gb|AFK68295.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas putida ND6]
Length = 459
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPAGGNV-ILRVMAP---AVLEVEDDGPGI 402
>gi|145550561|ref|XP_001460959.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124428790|emb|CAK93562.1| unnamed protein product [Paramecium tetraurelia]
Length = 441
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLAL 439
++ + ++NN + ++ QL ++F R + + P P K+++ PP+ +
Sbjct: 4 QQIVAQLNNKVEECLQDVQQQLDSSFRRIEAF--IDQFALPPYQSDPNKNVDFARPPVEI 61
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHM------QQRQVELSELSQSLLVAVEEPALR 493
PLKQ + + + ++P+ H+ +Q QV+L++L QS + V++ L+
Sbjct: 62 QPLKQT---------LANQITQGIKPITHLAIPQQNKQNQVQLTQL-QSKQIQVQQDELK 111
Query: 494 QALSN 498
+++N
Sbjct: 112 DSITN 116
>gi|410417834|ref|YP_006898283.1| two-component sensor protein [Bordetella bronchiseptica MO149]
gi|408445129|emb|CCJ56777.1| probable two-component sensor protein [Bordetella bronchiseptica
MO149]
Length = 781
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 18/257 (7%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IDEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 M--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
+ + PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 594 LGSGGTRVELWLPSPAP 610
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|379724543|ref|YP_005316674.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus 3016]
gi|386727286|ref|YP_006193612.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus K02]
gi|378573215|gb|AFC33525.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus 3016]
gi|384094411|gb|AFH65847.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus K02]
Length = 624
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V EE L+Q NL++ AL GG++E+ ++A+ V ++D+GP + + L
Sbjct: 503 VYCEENHLKQVFINLMKNALEAMPRGGRLELAASASEEDGVCVTLEDNGPGIPAEL--LK 560
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
G F+ + GL V+++++ +G + V D+ G GGT V +
Sbjct: 561 RLGEPFFTTKEKGSGL------GLMVSQKIVAEHGGRLSV------DSREG-GGTTVTVV 607
Query: 605 LPSPAPLSD 613
LP + +D
Sbjct: 608 LPQASERTD 616
>gi|452965117|gb|EME70146.1| Signal transduction histidine kinase [Magnetospirillum sp. SO-1]
Length = 477
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 26/153 (16%)
Query: 466 LAHMQQRQVE-LSELS--------QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIV 516
LA M Q VE L +L QSL+V AL++AL+NLI+ A+ + GG V
Sbjct: 337 LAAMVQGMVEDLDDLGARCGYRGPQSLVVEARPAALKRALANLIDNAI---KYGGSAA-V 392
Query: 517 SAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVAREL 574
+ DALVV++D GP + PF T GL VAR
Sbjct: 393 TLETSGRDALVVVEDQGPGIPAEARERVFAPF----VRLETSRSRDTGGTGLGLAVARAA 448
Query: 575 LESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607
+ ++G + T A GG RV + LP
Sbjct: 449 IRAHGGDI-------TLADRPGGGLRVTVSLPG 474
>gi|427817324|ref|ZP_18984387.1| probable two-component sensor protein [Bordetella bronchiseptica
D445]
gi|410568324|emb|CCN16357.1| probable two-component sensor protein [Bordetella bronchiseptica
D445]
Length = 781
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 18/257 (7%)
Query: 359 GTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSC 418
GT+ L D + +A R EETL+ +++ + SI + ++ N ++S N +Q S
Sbjct: 536 GTVATLTDITVIRQAE--RKREETLRFISHDMRAPQNSILALVAMN---QDSLNGVQQSD 590
Query: 419 KPLSLDTPA-KDIEMPMPPLALAPLKQNGIRPC--NVSDVLGDLFEAVRPLAHMQQRQVE 475
+ A + + + + L + I P ++S++L + + A + ++E
Sbjct: 591 ALARIAMLANRTLRLVDDFVHLTRAESMKIAPTELDLSELLREATDDFWAPARARGIRIE 650
Query: 476 LSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535
+ E LV ++ L++ALSNL++ A+ + G++ + A D + I DDGP
Sbjct: 651 IDEPLPIALVRGDDTLLQRALSNLLDNAIKFSPSDGRIR-CTVVRDADDWVASIQDDGPG 709
Query: 536 M--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593
+ + PF N N GL R + E G VISP +
Sbjct: 710 IAPQDQLQIFQPF----TRVNTAGSNEVGGAGLGLAFVRTVAERLGGRAEVISP---PSG 762
Query: 594 LGSGGTRVELWLPSPAP 610
G G+ L LP+ P
Sbjct: 763 TGPAGSTFVLRLPASPP 779
>gi|387905967|ref|YP_006336304.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia sp. KJ006]
gi|387580859|gb|AFJ89573.1| response regulator receiver sensor signal transduction histidine
kinase [Burkholderia sp. KJ006]
Length = 386
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 440 APLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSN 498
A ++++G +V +L D E +P+A ++ + L S++ ++A +P L QA+ N
Sbjct: 229 AGVRRSGFVKSDVVTILSDAVEFYQPVAELRGISLTLLLCSETEVLAEVDPLLLAQAIGN 288
Query: 499 LIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHS 542
LI+ AL Q G+VE VS V + DDGP + + S
Sbjct: 289 LIDNALKYAQDNGEVE-VSLCERDDRIEVTVSDDGPGIPFAERS 331
>gi|317051728|ref|YP_004112844.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
indicum S5]
gi|316946812|gb|ADU66288.1| ATP-binding region ATPase domain protein [Desulfurispirillum
indicum S5]
Length = 619
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
NV +LGD E P+A QQ+ ++L E+ + L V ++E Q L NLI A+ T
Sbjct: 474 NVVPLLGDCLEDFHPMA--QQKHIQLHLEVPKKLYVCIDELRFLQVLQNLISNAIKFTDS 531
Query: 510 GGKVEIVSAAAPAGDALVVIDDDG 533
G V A+ G +V + D G
Sbjct: 532 GSVN--VRASDETGRVVVEVADTG 553
>gi|81299264|ref|YP_399472.1| GAF sensor signal transduction histidine kinase [Synechococcus
elongatus PCC 7942]
gi|81168145|gb|ABB56485.1| GAF sensor signal transduction histidine kinase [Synechococcus
elongatus PCC 7942]
Length = 404
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 104/288 (36%), Gaps = 74/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 156 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 206
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 207 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 236
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 237 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 276
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHS 542
V PA L++ L NL+E A T V G + + A + DDGP + + H
Sbjct: 277 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 335
Query: 543 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 587
LF N GL +AR+L +S G +R SP
Sbjct: 336 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 376
>gi|374605523|ref|ZP_09678447.1| sensor protein yycG [Paenibacillus dendritiformis C454]
gi|374388852|gb|EHQ60250.1| sensor protein yycG [Paenibacillus dendritiformis C454]
Length = 617
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 24/174 (13%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
+P +++++L D+ + ++ + S ++ V ++ + Q L NL+ AL T
Sbjct: 457 QPTDIAEMLEDVLDRFSFQFRKKRITAKASVEGTNIPVVIDRDQIDQLLDNLVSNALKYT 516
Query: 508 QVGGKVE---IVSAAAPAGDALVVIDDDG-----PDMHYMMHSLTPFGSELFSENMVEDN 559
GG+V I P+ + V + D+G D+ + + S NM
Sbjct: 517 ADGGEVTLSAIFREDKPSVE--VNVSDNGIGIPQKDLERIFERFYRV-DKARSRNMGGTG 573
Query: 560 MTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSD 613
+ GL++ARE++ ++G +R+ S W GT+V LP A SD
Sbjct: 574 L------GLSIAREIVRAHGGDIRIESEWNE-------GTKVTFTLPVSAEGSD 614
>gi|392395468|ref|YP_006432070.1| signal transduction histidine kinase [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526546|gb|AFM02277.1| signal transduction histidine kinase [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 561
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 73/144 (50%), Gaps = 9/144 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSL-LVAVEEPALRQALSNLIEGAL 504
I P ++ DV+ + V PL ++++ + S + Q + ++ + L++ + NL+ AL
Sbjct: 397 IEPIDLVDVINAVENVVEPL--IEKKNISYSSVIDQDVPVIEGDREGLKRIVENLVSNAL 454
Query: 505 MRTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
T GG++++ VS + L+ + D+G + P+ E F ++ + +N
Sbjct: 455 KFTPKGGEIKVWVSYDQEQNEVLINVQDNGIGIR---KEDQPYIFEKFVQSDSSIHRQYN 511
Query: 564 FVA-GLTVARELLESYGCVVRVIS 586
GL +A+EL E +G ++V+S
Sbjct: 512 GSGLGLALAKELAELHGGWIKVVS 535
>gi|86157556|ref|YP_464341.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85774067|gb|ABC80904.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 748
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 23/171 (13%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
PC+ +D+LG+ + +R A + + LS VA + + Q L N+ A+ T+
Sbjct: 589 PCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPAVACDRDRVLQVLGNVASNAVKATE 648
Query: 509 VGGKVEIVSAAAPAGDALVV--IDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNF 564
G + AA GD VV I D GP + + H +F W
Sbjct: 649 EGA---VCLAAEAQGDGAVVFRIRDTGPGIPDADLPH--------VFDRFQRGSAARWRG 697
Query: 565 VA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPLSDL 614
GL +AR L+E++G + W A GT V LP+ AP DL
Sbjct: 698 SGLGLAIARGLVEAHGGRI-----WAESAP--GAGTTVSFTLPASAPAPDL 741
>gi|345872771|ref|ZP_08824699.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodococcus drewsii
AZ1]
gi|343917962|gb|EGV28735.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodococcus drewsii
AZ1]
Length = 885
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALR--QALSNLIEGALM 505
RP +SD++ + + VR L M +R + V VE ++R Q L NL+ A
Sbjct: 591 RPVQISDMVQQVVDGVRFL--MDERHHHFTWTLPDPQVQVEGDSVRLSQVLLNLLVNAAK 648
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM-HYMMHSLTPFGSELFSENMVE-DNMTWN 563
T GG+V V + A + + + D+G M + SL +LFS M D +
Sbjct: 649 YTPEGGRVS-VETESTADEVRIRVSDNGQGMSQEQIDSLF----KLFSPGMRPIDTPSGG 703
Query: 564 FVAGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPAP 610
GL +AR L E +G + IS G G GT + L LP P
Sbjct: 704 LGLGLAIARRLTEMHGGRLDAIST-------GVGQGTEMRLHLPRLQP 744
>gi|325275458|ref|ZP_08141388.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas sp. TJI-51]
gi|324099409|gb|EGB97325.1| integral membrane sensor signal transduction histidine kinase
[Pseudomonas sp. TJI-51]
Length = 459
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPAL-RQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ +++ + EP L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAH--KRGVALALEAEAPVWLKGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPQGGNV-IIRVLAP---AVLEVEDDGPGI 402
>gi|375307453|ref|ZP_09772740.1| hypothetical protein WG8_1264 [Paenibacillus sp. Aloe-11]
gi|375079784|gb|EHS58005.1| hypothetical protein WG8_1264 [Paenibacillus sp. Aloe-11]
Length = 1001
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V +E LRQ + NL+ A+ T G +++VS+ A G + ++D G + H++
Sbjct: 510 VQADENRLRQIMYNLVSNAIKHTD-KGSIKVVSSVAK-GTVTISVEDTGTGIPKDKHAVI 567
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
E + +D T GL ++R+L+E G +RV W ++ L GTR+
Sbjct: 568 FEYFEQLDGPLPKDGYT-GMGVGLYISRKLVERMGGEIRV--DW-SEVGL---GTRMTFT 620
Query: 605 LPS 607
LPS
Sbjct: 621 LPS 623
>gi|121605766|ref|YP_983095.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
gi|120594735|gb|ABM38174.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
CJ2]
Length = 1261
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
++ DV+ E RPL ++ ++ +S + L + + L Q L NL+ A T G
Sbjct: 961 SLGDVVERALETTRPLMLQRRHELAVSLPPEPLWLHADATRLEQVLVNLLTNAAKYTDKG 1020
Query: 511 GKVEIVSA---AAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE-DNMTWNFVA 566
G++ + + AA G A+V + D G + L P +LF++ D
Sbjct: 1021 GRIWLSAGQEEAAGTGAAVVRVRDTGIG---IAPELLPRIFDLFTQAERSIDRSQGGLGI 1077
Query: 567 GLTVARELLESYGCVVRVIS 586
GL + R LLE +G V V S
Sbjct: 1078 GLCLVRRLLELHGGTVDVRS 1097
>gi|625842|pir||JC2206 sensory kinase - Synechococcus sp
gi|987710|dbj|BAA06109.1| sensory kinase [Synechococcus elongatus PCC 6301]
gi|743316|prf||2012230A sensory kinase
Length = 392
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 104/288 (36%), Gaps = 74/288 (25%)
Query: 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366
Q R+ L+ QI+ PL++++T +K+L M+ E + + ++ + DRL
Sbjct: 160 QEQDRLEVLLHQIKNPLTALRTFAKLLLRRMQPEERNRQLAASLLRESDRL--------- 210
Query: 367 AVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTP 426
+ L +N+ + S P + S PL L++
Sbjct: 211 -------------ADLLNLLNSPSQSAPTAALP-----------------SANPLLLNSA 240
Query: 427 AKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVA 486
+ I P V D L L E R +A Q++ + L
Sbjct: 241 SPQI------------------PTEVDDYLPLLIE--RTVAIAQEKGLAFEVQDWRPLPP 280
Query: 487 VEEPA--LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHS 542
V PA L++ L NL+E A T V G + + A + DDGP + + H
Sbjct: 281 VLAPASTLQEILGNLLENACKYTPVSGCIGLSWVALDTAAIAFCVWDDGPQIPAEDLPH- 339
Query: 543 LTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISP 587
LF N GL +AR+L +S G +R SP
Sbjct: 340 -------LFERNFRGVQGKGEIPGSGLGLAIARDLSQSVGGDLRCYSP 380
>gi|291288471|ref|YP_003505287.1| integral membrane sensor signal transduction histidine kinase
[Denitrovibrio acetiphilus DSM 12809]
gi|290885631|gb|ADD69331.1| integral membrane sensor signal transduction histidine kinase
[Denitrovibrio acetiphilus DSM 12809]
Length = 460
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 417 SCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVEL 476
+C+ +D + + MP +Q +R N+ ++L E ++PLA+ + ++
Sbjct: 291 ACEVNKIDHIMQSLFADMP-------EQLEVRIANIQNILSLTLEELKPLANAKSIKIHF 343
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD-DGPD 535
E +LV ++ LSNL++ AL G + I + G ++ + DD DG D
Sbjct: 344 IEKENIVLVKCYPILIQLMLSNLLDNALEAIGTFGNIYIEVETSEDGTSIEICDDGDGID 403
>gi|161522467|ref|YP_001585396.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
ATCC 17616]
gi|160346020|gb|ABX19104.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
ATCC 17616]
Length = 539
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP V D++ E+V+P +++Q+ + + +++ ++ L Q L NL++ A +
Sbjct: 242 RPVTVRDLVARGVESVQPKLATREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFS 301
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GG+++I + A+ VID + S+ +LF + T F G
Sbjct: 302 PRGGRIDISARVEGPVVAIRVIDRGVGIAPGALESIF----DLFEQEGAAHRPTDGFGLG 357
Query: 568 LTVARELLESYGCVV 582
L + R +E +G ++
Sbjct: 358 LAICRSFVELHGGMI 372
>gi|291295416|ref|YP_003506814.1| histidine kinase [Meiothermus ruber DSM 1279]
gi|290470375|gb|ADD27794.1| histidine kinase [Meiothermus ruber DSM 1279]
Length = 415
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 419 KPLSLDTPAKDIEMPMPPLALAPLKQNGIR--PCNVSDVLGDLFEAVRPLAHMQQRQVEL 476
+ L L+T A+++ LAL+ + +R P +++D++ + F+ +PLA +R +EL
Sbjct: 259 EALRLETLAQNL------LALSRAESGEVRGQPLDLADLVSEAFDRFQPLAL--ERGLEL 310
Query: 477 SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+Q V + L QAL+NL+ AL T G ++ + G A + + D GP
Sbjct: 311 GLEAQPAPVHADPRLLEQALNNLVHNALRYTSKGSV--LLKSGLEEGWAWLEVADTGPGF 368
Query: 537 HYMMH 541
H H
Sbjct: 369 HKDAH 373
>gi|163856323|ref|YP_001630621.1| sensor histidine kinase [Bordetella petrii DSM 12804]
gi|163260051|emb|CAP42352.1| sensor histidine kinase [Bordetella petrii]
Length = 411
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 496 LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534
+ NL++ A+ T VGG +E+ A AP G AL+ + DDGP
Sbjct: 310 VGNLMDNAVRYTPVGGNIEVRCAPAPDGGALLSVADDGP 348
>gi|421486269|ref|ZP_15933816.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter piechaudii HLE]
gi|400195482|gb|EJO28471.1| His Kinase A phosphoacceptor domain-containing protein 14
[Achromobacter piechaudii HLE]
Length = 470
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
++ D+ + + P A +Q + L + +LV+ E LR+A +NL++ A+
Sbjct: 309 VDLVDLADGVIRGLLPTARARQLDIGLEAAVRPVLVSGTEWLLREAATNLVDNAIRYASP 368
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDM 536
G+V V+ A G A ++++DDGP M
Sbjct: 369 AGEV-TVTVQAGDGLARLIVEDDGPGM 394
>gi|333978641|ref|YP_004516586.1| integral membrane sensor signal transduction histidine kinase
[Desulfotomaculum kuznetsovii DSM 6115]
gi|333822122|gb|AEG14785.1| integral membrane sensor signal transduction histidine kinase
[Desulfotomaculum kuznetsovii DSM 6115]
Length = 535
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
L Q L NLI+ AL T GG+VE V+A AG V + D GP + H + +
Sbjct: 425 LAQVLYNLIDNALRVTPAGGRVE-VAARQAAGKVEVAVKDTGPGIP--AHEIPLLWERFY 481
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ GL +A+++++ +G ++V S
Sbjct: 482 KGDPSRRRTGGGSGLGLAIAKQIIDLHGGEIKVDS 516
>gi|398824145|ref|ZP_10582488.1| histidine kinase, partial [Bradyrhizobium sp. YR681]
gi|398225169|gb|EJN11448.1| histidine kinase, partial [Bradyrhizobium sp. YR681]
Length = 356
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ ++ EA +PLA +Q+ + L+ S +++ + +R+A+ NLI A+ +
Sbjct: 204 PVDVAALVKEVAEANQPLAVNKQQTISLATPS-NIVTMCDTDRIREAIDNLISNAIKYSP 262
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+GG++ V+ + D +V + D+G +
Sbjct: 263 IGGRIG-VAVSHEGSDTIVRVSDEGAGL 289
>gi|334137290|ref|ZP_08510730.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
gi|333605189|gb|EGL16563.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF7]
Length = 468
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +V+ ++ D+++ ++ ++++S SL V ++ L+Q L NL++ A+ TQ
Sbjct: 316 PVDVNRLVKDIYQQFAGNCQRRRMELQISLAENSLYVFGDQNRLKQVLINLLDNAMKFTQ 375
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE-DNMTWNFVAG 567
G + I++ + L+V +D+G ++P + +E + DN G
Sbjct: 376 ENGVIRIMTRVEGSLVHLIV-EDEG-------EGISPEAVKYVTEKFYKADNRQPGSGLG 427
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGT 599
L++ +E+ + +G ++V S LG G T
Sbjct: 428 LSICQEIAQLHGGTLQVTSE------LGQGTT 453
>gi|206561167|ref|YP_002231932.1| two-component regulatory system, sensor kinase protein
[Burkholderia cenocepacia J2315]
gi|198037209|emb|CAR53130.1| two-component regulatory system, sensor kinase protein
[Burkholderia cenocepacia J2315]
Length = 448
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATMREPVDLQALLAECVAAHAPLA--QRRDIDLGFEETRAASVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|90421623|ref|YP_529993.1| response regulator receiver sensor signal transduction histidine
kinase [Rhodopseudomonas palustris BisB18]
gi|90103637|gb|ABD85674.1| response regulator receiver sensor signal transduction histidine
kinase [Rhodopseudomonas palustris BisB18]
Length = 582
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++S ++ ++ EA RPLA +Q+++ +S Q + + +R+A+ NL+ A+ +
Sbjct: 429 PVDISALVTEVAEANRPLALNKQQEITVSA-PQDQVTVCDSDRIREAIDNLVSNAIKYSP 487
Query: 509 VGGKVEIVSAAAPAGDALVV-IDDDGPDM 536
VGGK+ ++ +GD V+ + D G +
Sbjct: 488 VGGKIALI--VDRSGDNTVIRVTDQGAGL 514
>gi|398814768|ref|ZP_10573446.1| PAS domain S-box [Brevibacillus sp. BC25]
gi|398035856|gb|EJL29082.1| PAS domain S-box [Brevibacillus sp. BC25]
Length = 607
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 437 LALAPLKQNGIR-PCNVSDVLGDL-FEAVRPLAHMQQRQVELSELSQSLL--VAVEEPAL 492
L L+ G+R C +D+ L + A R +Q++V+LS S L V ++ A+
Sbjct: 434 LQLSRFDSQGVRLHCKEADINRLLRYAADRFSMFSEQQEVQLSLDMPSKLPPVYIDLDAI 493
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSELF 551
Q L NL+ A+ T GG V +++ + V I D G + L +
Sbjct: 494 NQVLDNLLSNAIKYTPQGGTVVLMAKENHKQKRVQVSITDTGIGIPS--RDLKRIFERFY 551
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
+ GL +AREL++++G + + S W GT V W+P
Sbjct: 552 RVDKARSRGQGGTGLGLAIARELVQAHGADIEITSEWNV-------GTTVTFWVP 599
>gi|337751586|ref|YP_004645748.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus KNP414]
gi|336302775|gb|AEI45878.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
mucilaginosus KNP414]
Length = 614
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 15/129 (11%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V EE L+Q NL++ AL GG++E+ ++A+ V ++D+GP + + L
Sbjct: 493 VYCEENHLKQVFINLMKNALEAMPRGGRLELAASASEEDGVCVTLEDNGPGIPAEL--LK 550
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604
G F+ + GL V+++++ +G + V D+ G GGT V +
Sbjct: 551 RLGEPFFTTKEKGSGL------GLMVSQKIVAEHGGRLSV------DSREG-GGTTVTVV 597
Query: 605 LPSPAPLSD 613
LP + +D
Sbjct: 598 LPQASERTD 606
>gi|445494512|ref|ZP_21461556.1| PAS/PAC sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
gi|444790673|gb|ELX12220.1| PAS/PAC sensor hybrid histidine kinase [Janthinobacterium sp. HH01]
Length = 571
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+S+VL D + P A + ++ + LS+ V + ++Q + NL+ A+ + G
Sbjct: 264 GLSEVLRDCQALIGPQAEKRGIRLFFASLSEPFFVHADRTRVKQVMINLLSNAIKYNRHG 323
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGL 568
GKV + A G + + D G + M PF + L E+ E+ GL
Sbjct: 324 GKVTVECTAGREGMVRISVTDTGAGLSSEQMEQLFQPF-NRLGQEDGAEEGTGI----GL 378
Query: 569 TVARELLESYGCVVRVIS 586
V ++L E G + V S
Sbjct: 379 VVTKQLTELMGGAIGVES 396
>gi|410090184|ref|ZP_11286783.1| copper sensor histidine kinase [Pseudomonas viridiflava UASWS0038]
gi|409762510|gb|EKN47525.1| copper sensor histidine kinase [Pseudomonas viridiflava UASWS0038]
Length = 453
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA 518
+ E PLA + QV LS Q+ V + LR+ LSNL++ AL T G V+I
Sbjct: 319 VLEFFAPLA--EDTQVSLSRKGQAT-VHGDAALLRRVLSNLLDNALRFTHPVGYVKIELK 375
Query: 519 AAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 578
+P+G L V ++ G D+ +LT + E+ + + GL + R ++ ++
Sbjct: 376 TSPSGVVLSV-ENSGTDI--AADALTRLFDRFYREDPARLESSEHAGLGLAITRSIIHAH 432
Query: 579 GCVVRVISPWKTDAALGSGGTRVELWLP 606
G +R S +G TR + LP
Sbjct: 433 GGTIRCES--------ANGITRFLIELP 452
>gi|219848910|ref|YP_002463343.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219543169|gb|ACL24907.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 1016
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 25/135 (18%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP-----AGDALVVIDDDGPDMHY 538
++ + PALR+ + NL+ A+ GG + I + AP A L+VI D+G +
Sbjct: 762 IITGDAPALRELIINLVLNAIDALPNGGTITIRTTPAPPEVFGAAGVLLVIQDNGVGIDP 821
Query: 539 MMHS--LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS-PWKTDAALG 595
+H PF FS V GL + R +++ +G + + S P K
Sbjct: 822 ALHERIFAPF----FSTKGVRGTGM-----GLAIVRGIVQQHGGRITLESEPGK------ 866
Query: 596 SGGTRVELWLPSPAP 610
GT ++WLP P
Sbjct: 867 --GTMFQIWLPVGQP 879
>gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
Length = 1416
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ +L L +A R A + V L S ++V + + Q L NL+ AL T
Sbjct: 1117 PTDLAALLRTLVDACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWNLLSNALKFTP 1176
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMV-EDNMTWNFVAG 567
GG V + A G A V + D G + + P ++FS+ V T G
Sbjct: 1177 AGGTVTLTLAREGDG-ARVDVADTG---NGIAPDFLPKIFDMFSQASVPRSRSTHGLGIG 1232
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609
L++ + L E +G + S +G G+R LWLP+ A
Sbjct: 1233 LSLVKHLAEMHGGRIEAHSD-----GIGH-GSRFRLWLPAHA 1268
>gi|421868427|ref|ZP_16300075.1| Sensory histidine kinase QseC [Burkholderia cenocepacia H111]
gi|444370717|ref|ZP_21170355.1| GHKL domain protein [Burkholderia cenocepacia K56-2Valvano]
gi|358071449|emb|CCE50953.1| Sensory histidine kinase QseC [Burkholderia cenocepacia H111]
gi|443596941|gb|ELT65403.1| GHKL domain protein [Burkholderia cenocepacia K56-2Valvano]
Length = 448
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 437 LALAPLKQNGI---RPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPAL 492
LALA + +G P ++ +L + A PLA Q+R ++L E +++ V + AL
Sbjct: 270 LALARAEPDGATMREPVDLQALLAECVAAHAPLA--QRRDIDLGFEETRAASVVADVGAL 327
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
R NL++ A+ T GG++++ AG A V I D GP +
Sbjct: 328 RVMFGNLLDNAVKYTPDGGRIDVSLTRDAAGRACVQIGDSGPGI 371
>gi|346309636|ref|ZP_08851716.1| hypothetical protein HMPREF9457_03425 [Dorea formicigenerans
4_6_53AFAA]
gi|345898435|gb|EGX68314.1| hypothetical protein HMPREF9457_03425 [Dorea formicigenerans
4_6_53AFAA]
Length = 332
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P N+S ++ D+ E A + + + LS +++ ++ + + +A+ N+++ AL T
Sbjct: 183 PENLSVLIQDILERFEVWAKRENKTITLSG-KENVFLSCDALWISEAVGNIVKNALEHTV 241
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMHSLTPFGSELFSENMVEDNMTWNFVA 566
GG + + P +VV +DDG +H + + F FS++ T
Sbjct: 242 EGGHIIVHLEQNPLMTQIVV-EDDGKGIHPEDLYNIFKRFYRSRFSQD------THGIGL 294
Query: 567 GLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
GL +A+ ++E +G + V S LG G T
Sbjct: 295 GLPLAKAIVEMHGGTISVTSK------LGIGTT 321
>gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
100599]
gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
100599]
Length = 607
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 437 LALAPLKQNGIR-PCNVSDVLGDL-FEAVRPLAHMQQRQVELS-ELSQSL-LVAVEEPAL 492
L L+ G+R C +D+ L + A R +Q++V+LS ++ L LV ++ A+
Sbjct: 434 LQLSRFDSQGVRLHCKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVYIDLDAI 493
Query: 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSELF 551
Q L NL+ A+ T GG V +++ + + I D G + L +
Sbjct: 494 NQVLDNLLSNAIKYTPQGGTVVLMAKENHKQRRVQISITDTGIGIPS--RDLKRIFERFY 551
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
+ GL +AREL++++G + + S W GT V W+P
Sbjct: 552 RVDKARSRGQGGTGLGLAIARELVQAHGADIEITSEWNV-------GTTVTFWVP 599
>gi|163761562|ref|ZP_02168634.1| probable phosphate regulon sensor histidine kinase transmembrane
protein [Hoeflea phototrophica DFL-43]
gi|162281276|gb|EDQ31575.1| probable phosphate regulon sensor histidine kinase transmembrane
protein [Hoeflea phototrophica DFL-43]
Length = 435
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 456 LGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEI 515
+G + + +RP+A+ ++ L+ + + V + L Q SNLIE A Q G +VEI
Sbjct: 279 VGHVIDTLRPMANELGVEIALTAPEEPVQVVGDVDELIQVFSNLIENACKYGQTGKRVEI 338
Query: 516 VSAAAPAGDALVVIDDDGPDM 536
+ + G A V + D GP +
Sbjct: 339 SVSGSEPGGAQVSVRDFGPGI 359
>gi|428299234|ref|YP_007137540.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
gi|428235778|gb|AFZ01568.1| integral membrane sensor signal transduction histidine kinase
[Calothrix sp. PCC 6303]
Length = 455
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
C ++D++ DL E LA+ Q+ S E SQ L V +E + + SNLI A+ T
Sbjct: 303 CCLNDLINDLLEEFSDLANNTDLQLTSSLEYSQPLHVLGDEDQILRLFSNLIANAIQYTP 362
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDG 533
GG V V+ DA+V + D G
Sbjct: 363 AGGYVN-VTLKRNNDDAVVEVRDTG 386
>gi|398983801|ref|ZP_10690230.1| signal transduction histidine kinase [Pseudomonas sp. GM24]
gi|399012568|ref|ZP_10714888.1| signal transduction histidine kinase [Pseudomonas sp. GM16]
gi|398115401|gb|EJM05185.1| signal transduction histidine kinase [Pseudomonas sp. GM16]
gi|398156637|gb|EJM45052.1| signal transduction histidine kinase [Pseudomonas sp. GM24]
Length = 461
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH +R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--KRGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|374365236|ref|ZP_09623327.1| signal transduction histidine kinase [Cupriavidus basilensis OR16]
gi|373103091|gb|EHP44121.1| signal transduction histidine kinase [Cupriavidus basilensis OR16]
Length = 641
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P +DV+ E++RP+ +Q+ +S +S V+ + L Q L NL+ A
Sbjct: 347 LTPTAYNDVVTASIESIRPVLEAAGQQLVVSLPPKSPYVSADAARLGQVLINLLSNATKY 406
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSE----LFSENMVEDNMTW 562
T GG V V G + I D G H + P + LFS+ E
Sbjct: 407 TPRGGTV-TVHIVVEDGSVVTTISDTG-------HGMEPAALDRIFNLFSQER-EGISRG 457
Query: 563 NFVAGLTVARELLESYGCVVRVISP 587
GL +AR ++E++G ++ SP
Sbjct: 458 GLGIGLALARAVVEAHGGAIQADSP 482
>gi|329912562|ref|ZP_08275777.1| periplasmic sensor hybrid histidine kinase [Oxalobacteraceae
bacterium IMCC9480]
gi|327545592|gb|EGF30760.1| periplasmic sensor hybrid histidine kinase [Oxalobacteraceae
bacterium IMCC9480]
Length = 355
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG 510
+V ++ D E VR L + Q + +++ V ++ L Q LSNL+ A T G
Sbjct: 65 DVGSIVIDAVEQVRALLEARHHQFVVQMPAEASWVCADKERLVQVLSNLLNNAARYTPDG 124
Query: 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFVAGLT 569
G++ + + A+ D ++ + D+G M+ +L P +LFS+ D + GL
Sbjct: 125 GRITL-AVASTDSDIVLSVSDNGIG---MLPALIPRVFDLFSQAERTADRVQGGLGIGLA 180
Query: 570 VARELLESYG 579
+ R L+ +G
Sbjct: 181 LVRSLVGLHG 190
>gi|330808063|ref|YP_004352525.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376171|gb|AEA67521.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 463
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|145221486|ref|YP_001132164.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium gilvum PYR-GCK]
gi|145213972|gb|ABP43376.1| integral membrane sensor signal transduction histidine kinase
[Mycobacterium gilvum PYR-GCK]
Length = 394
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 10/113 (8%)
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPF 546
+E L Q L NL+E AL T GG VE+ GD L + + D G + L
Sbjct: 267 DEQRLSQVLGNLLENALRHTPSGGSVELT--GVRDGDRLRIAVADTGEGI--APEHLPRL 322
Query: 547 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
+ + D GL +A+ L+E++G + V S A LG+G T
Sbjct: 323 FERFYRADAARDREHGGAGLGLAIAKALVEAHGGSISVAS-----AGLGAGAT 370
>gi|395788191|ref|ZP_10467766.1| hypothetical protein ME7_01101 [Bartonella birtlesii LL-WM9]
gi|395409524|gb|EJF76112.1| hypothetical protein ME7_01101 [Bartonella birtlesii LL-WM9]
Length = 595
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 480 SQSLLVAVEEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVV-IDDDGPD 535
++ LV E L Q +SNLIE A R+ + GK+ I + G AL++ I+D+GP
Sbjct: 468 GKAYLVLGHELRLGQVMSNLIENA--RSFIPHESGKICITMKSH--GSALILTIEDNGPG 523
Query: 536 MHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALG 595
+ ++ +++ ED+ N GL+++R+++E++ ++ + + +
Sbjct: 524 IRS--ENIERIFERFYTDRPNEDSFGQNSGLGLSISRQIIEAHNGTIKAENVFDPELGNS 581
Query: 596 SGGTRVELWLP 606
G R + LP
Sbjct: 582 KTGARFIIMLP 592
>gi|222528132|ref|YP_002572014.1| PAS/PAC sensor signal transduction histidine kinase
[Caldicellulosiruptor bescii DSM 6725]
gi|312621185|ref|YP_004022798.1| multi-sensor signal transduction histidine kinase
[Caldicellulosiruptor kronotskyensis 2002]
gi|222454979|gb|ACM59241.1| PAS/PAC sensor signal transduction histidine kinase
[Caldicellulosiruptor bescii DSM 6725]
gi|312201652|gb|ADQ44979.1| multi-sensor signal transduction histidine kinase
[Caldicellulosiruptor kronotskyensis 2002]
Length = 571
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I N+S+++ + E +R A+ ++ Q L + + +++ + L Q L NLI A+
Sbjct: 414 IEEVNISELVRFVCEKMRIHAN-KKHQSLLCNVQEDIIIDADRDRLEQVLINLINNAITY 472
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGP 534
Q GG++E V G+ + ++D+GP
Sbjct: 473 VQDGGRIE-VCLKKENGNIELTVEDNGP 499
>gi|398886955|ref|ZP_10641789.1| signal transduction histidine kinase [Pseudomonas sp. GM60]
gi|398186601|gb|EJM73971.1| signal transduction histidine kinase [Pseudomonas sp. GM60]
Length = 461
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|333994665|ref|YP_004527278.1| sensor protein GacS [Treponema azotonutricium ZAS-9]
gi|333734676|gb|AEF80625.1| sensor protein GacS [Treponema azotonutricium ZAS-9]
Length = 516
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQ 508
C++S VL L E ++++ L+ S L+ +E L+QAL+N++ A+ T
Sbjct: 192 CSLSSVLKSLAELTSSYTEVKKQNFTLNTASDLPDLILADEAGLKQALTNILGNAVKFTP 251
Query: 509 VGGKVEIVSAAAPAGDALVV---IDDDGPDM--HYMMHSLTPF--GSELFSENMVEDNMT 561
GG + +A D +++ I D G + M TPF G+ S
Sbjct: 252 EGGSINFSVSADKQNDTVMLCFEIKDTGIGITDELMSRLFTPFEQGNNGISRTY------ 305
Query: 562 WNFVAGLTVARELLESYGCVVRVIS 586
+ GL +++ ++E G +RV S
Sbjct: 306 YGVGLGLPISKRIIEKMGGEIRVES 330
>gi|416943646|ref|ZP_11934732.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. TJI49]
gi|325524137|gb|EGD02290.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. TJI49]
Length = 602
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 12/178 (6%)
Query: 413 KLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQR 472
+LQNS SL+ KD+ + + L + P ++ +LG++ + R Q+
Sbjct: 276 RLQNSAS--SLEALVKDLTDYIKLRSTKRLAET--EPIGIAALLGEVLDPFRARIDAQRI 331
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-KVEIVSAAAPAGDAL-VVID 530
V L + + LRQ L+NLIE A+ T+ G V I A APAG L + +
Sbjct: 332 AVTSHVAPYDLAIRSDRKLLRQILTNLIENAVKYTRGGTIAVSIALADAPAGRQLKIAVR 391
Query: 531 DDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
D G + ++ PF + + D + GL V RE++ + V V S
Sbjct: 392 DTGVGIAKQHLSKIFEPFYRANDAAGLSVDGIG----MGLAVVREIVTTLRGHVEVRS 445
>gi|357391857|ref|YP_004906698.1| putative two-component system sensor kinase [Kitasatospora setae
KM-6054]
gi|311898334|dbj|BAJ30742.1| putative two-component system sensor kinase [Kitasatospora setae
KM-6054]
Length = 383
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 13/149 (8%)
Query: 467 AHMQQRQVELS-ELSQSLLVAV-EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
A+ ++ V L E+ + L AV +E L Q ++NL++ A + GG V + + AA G
Sbjct: 242 AYARRGDVRLRVEVEPAGLAAVADEERLHQVVANLVDNACKHSPAGGTVTVRARAAEGGG 301
Query: 525 ALVVIDDDGPDMHYMMHS--LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVV 582
L+ ++D GP + FG S + GL +AR ++ +G +
Sbjct: 302 LLLEVEDQGPGIPAADRERVFERFGRS-GSPTALGPGSDGGTGLGLAIARWAVDLHGGRI 360
Query: 583 RVISPWKTDAALGSGGTRVELWLPSPAPL 611
RV + G R+E+ LP +P+
Sbjct: 361 RVAEE--------AAGCRIEVILPGESPV 381
>gi|221208075|ref|ZP_03581080.1| GntR domain protein [Burkholderia multivorans CGD2]
gi|221171978|gb|EEE04420.1| GntR domain protein [Burkholderia multivorans CGD2]
Length = 240
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 432 MPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLLVA 486
MP+ P A+ L +N P V+D + D EA V P+ + Q +LSE +
Sbjct: 1 MPVRP-AIVHLMKNV--PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE-----LE 52
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSLTP 545
+ +LR+ALS L ++R + G V + SA A A + PD + M ++L
Sbjct: 53 ISRASLREALSTLEALGMLRIRAGKGVYVESARATTAHAWQFAEQSSPPDTYQMRYALEG 112
Query: 546 FGSELFSENMVEDNMTW 562
F + + + + +D++ W
Sbjct: 113 FAARMAARVVSDDDIAW 129
>gi|161525910|ref|YP_001580922.1| GntR family transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|160343339|gb|ABX16425.1| GntR domain protein [Burkholderia multivorans ATCC 17616]
Length = 240
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 432 MPMPPLALAPLKQNGIRPCNVSD----VLGDLFEA-VRPLAHMQQRQVELSELSQSLLVA 486
MP+ P A+ L +N P V+D + D EA V P+ + Q +LSE +
Sbjct: 1 MPVRP-AIVHLMKNV--PHTVTDAAIATIRDRIEAGVYPVGSLLPAQRQLSEE-----LE 52
Query: 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG-PDMHYMMHSLTP 545
+ +LR+ALS L ++R + G V + SA A A + PD + M ++L
Sbjct: 53 ISRASLREALSTLEALGMLRIRAGKGVYVESARATTAHAWQFAEQSSPPDTYQMRYALEG 112
Query: 546 FGSELFSENMVEDNMTW 562
F + + + + +D++ W
Sbjct: 113 FAARMAARVVSDDDIAW 129
>gi|182414367|ref|YP_001819433.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
terrae PB90-1]
gi|177841581|gb|ACB75833.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
terrae PB90-1]
Length = 401
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
++ G+R V D L D +P A + QV + L V+ LRQ L NLIE
Sbjct: 237 IRSVGLRAA-VQDALDDALTLAQPRAIALENQVPVG-----LSAKVDAAKLRQVLGNLIE 290
Query: 502 GALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMT 561
A+ + G+V + A A + + DDGP + S + +
Sbjct: 291 NAIKYGRERGRVVVQGRATGAAMVEIAVCDDGPGIPAEARSRVF--ERFYRVDKARSREQ 348
Query: 562 WNFVAGLTVARELLESYGCVVRVISPWKTDA 592
GL++ + L++++G VRV S A
Sbjct: 349 GGTGLGLSIVKNLVQAHGGEVRVESELGRGA 379
>gi|398875291|ref|ZP_10630468.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
gi|398207946|gb|EJM94687.1| signal transduction histidine kinase [Pseudomonas sp. GM67]
Length = 462
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPPGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|410864756|ref|YP_006979367.1| Integral membrane sensor signal transduction histidine kinase
[Propionibacterium acidipropionici ATCC 4875]
gi|410821397|gb|AFV88012.1| Integral membrane sensor signal transduction histidine kinase
[Propionibacterium acidipropionici ATCC 4875]
Length = 369
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS--LLVAVEEPALRQALSNLIEGALM 505
+P V+ ++ +++RP H + + +++++ L V V+E L Q L NL+ AL
Sbjct: 215 QPHQVAGLIATSVDSIRPRYHDKGVAL-ITDVTTDIDLTVDVDETRLGQVLGNLLTNALR 273
Query: 506 RTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNF 564
T GG V I + PA D + V I D G + + L + + D
Sbjct: 274 HTPPGGSVTITT--RPASDEVAVTITDTGEGL--LASQLPHVFERFYRGDTARDRDRSGS 329
Query: 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610
GLT+++ +++++G + S + G G T E+ LP P
Sbjct: 330 GIGLTISKAIIDAHGGTITAHSDGQ-----GQGAT-FEILLPPSRP 369
>gi|354582618|ref|ZP_09001519.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
gi|353198910|gb|EHB64376.1| multi-sensor signal transduction histidine kinase [Paenibacillus
lactis 154]
Length = 476
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+R + ++ ++ A Q+ ++LS S +L + +E L Q L+NL++ A
Sbjct: 316 LRQVDAGELCERVYRKFSVRAKEQEIDLQLSLHSDLILESADEDKLEQVLTNLLDNAFRH 375
Query: 507 TQVGGKVEIVS--AAAPAGDAL-VVIDDDG 533
T G +V+I + AP GDAL V++ D G
Sbjct: 376 TPSGKQVKIQAHRVKAPKGDALQVIVSDQG 405
>gi|408483142|ref|ZP_11189361.1| putative two-component system sensor kinase [Pseudomonas sp. R81]
Length = 461
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAH--ARGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTSPGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|423695845|ref|ZP_17670335.1| sensor histidine kinase [Pseudomonas fluorescens Q8r1-96]
gi|388009640|gb|EIK70891.1| sensor histidine kinase [Pseudomonas fluorescens Q8r1-96]
Length = 463
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|377813471|ref|YP_005042720.1| histidine kinase [Burkholderia sp. YI23]
gi|357938275|gb|AET91833.1| histidine kinase [Burkholderia sp. YI23]
Length = 466
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 466 LAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD 524
LA QQR ++L +E+ L V L +SNLI+ A+ TQ GG+V +V A A
Sbjct: 322 LAAAQQRNIDLGAEIGDGLWVKGNAELLMALVSNLIDNAIRYTQTGGRVTVV-AKREADR 380
Query: 525 ALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRV 584
+ + D+GP + + +F + T GL +ARE+ +G VR+
Sbjct: 381 IVSRVMDNGPGIPDDIR------ERVFERFVRGFASTEGTGLGLPIAREIARRHGGDVRL 434
Query: 585 IS 586
+
Sbjct: 435 AT 436
>gi|413959961|ref|ZP_11399192.1| Multi-sensor hybrid histidine kinase [Burkholderia sp. SJ98]
gi|413939911|gb|EKS71879.1| Multi-sensor hybrid histidine kinase [Burkholderia sp. SJ98]
Length = 588
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +S ++ + +A+RP A + V + L +S +A + L Q NL+ A
Sbjct: 292 PVELSAIIDEAVDAMRPAAAQNGQTVTIDGLDRSATIAGDHVRLNQVFVNLLNNATTYAP 351
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVE-DNMTWNFVAG 567
G + VS G+ V + DDGP + L LF + E D G
Sbjct: 352 PHGHTD-VSMVVGDGEVRVCLSDDGPG---VAEPLRDRVFSLFVQGPRELDRSQGGCGIG 407
Query: 568 LTVARELLESYG 579
L V+R+++E +G
Sbjct: 408 LAVSRQIVERHG 419
>gi|347732534|ref|ZP_08865613.1| HAMP domain protein [Desulfovibrio sp. A2]
gi|347518708|gb|EGY25874.1| HAMP domain protein [Desulfovibrio sp. A2]
Length = 491
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 17/139 (12%)
Query: 450 CNVSDVLGDLFEAVRPL--AHMQQRQVELS----ELSQSLLVAVEEPALRQALSNLIEGA 503
+V+ +L L E R L H Q +V ++ + ++ + + AL++ LSNL+E A
Sbjct: 334 VDVTALLESLVEDCRDLHTGHAGQPEVRITLHGADGERATRLKAQPLALKRCLSNLLENA 393
Query: 504 LMRTQVGGKVEIVSAAAPAGDAL-VVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNM 560
+ GG+V+I AGD L V I D GP + HY+ PF F +
Sbjct: 394 VRYG--GGQVDI--EVREAGDMLSVAIRDQGPGLPEHYVDTVFEPF----FRVEHSRNRQ 445
Query: 561 TWNFVAGLTVARELLESYG 579
T GL++AR + +G
Sbjct: 446 TGGSGLGLSIARNIARQHG 464
>gi|189348658|ref|YP_001941854.1| putative signal transduction histidine kinase [Burkholderia
multivorans ATCC 17616]
gi|189338796|dbj|BAG47864.1| putative signal transduction histidine kinase [Burkholderia
multivorans ATCC 17616]
Length = 528
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP V D++ E+V+P +++Q+ + + +++ ++ L Q L NL++ A +
Sbjct: 231 RPVTVRDLVARGVESVQPKLATREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFS 290
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GG+++I + A+ VID + S+ +LF + T F G
Sbjct: 291 PRGGRIDISARVEGPVVAIRVIDRGVGIAPGALESIF----DLFEQEGAAHRPTDGFGLG 346
Query: 568 LTVARELLESYGCVV 582
L + R +E +G ++
Sbjct: 347 LAICRSFVELHGGMI 361
>gi|377573206|ref|ZP_09802278.1| putative histidine kinase [Mobilicoccus pelagius NBRC 104925]
gi|377538089|dbj|GAB47443.1| putative histidine kinase [Mobilicoccus pelagius NBRC 104925]
Length = 417
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 25/143 (17%)
Query: 475 ELSELSQSLLVAVEEPA--------LRQALSNLIEGALMRTQVGG--KVEIVSAAAPAGD 524
E+ + ++V V EP LRQA++NL++ A MR GG + E++ + GD
Sbjct: 288 EVETIIDGVVVDVTEPVEVSGDAMLLRQAMTNLVDNA-MRHGRGGETRAEVLLSVFRDGD 346
Query: 525 -ALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVR 583
A+V + DDGP + L+P+ + N + GL + R ++E +G +R
Sbjct: 347 VAVVRVADDGPGFPADLDVLSPYVAGRTGGNGL----------GLPLVRWIVERHGGEMR 396
Query: 584 VISPWKTDAALGSGGTRVELWLP 606
+ + D G G VEL +P
Sbjct: 397 IGAAEGRD---GLDGAAVELRIP 416
>gi|359792830|ref|ZP_09295624.1| PAS sensor protein [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251023|gb|EHK54433.1| PAS sensor protein [Mesorhizobium alhagi CCNWXJ12-2]
Length = 1207
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
+++D L + ++P A+ ++ + S S+ V + ++RQ N++ A+ TQ
Sbjct: 1053 VSLNDTLAETVAMMQPQANRERVIIRSSFASKLPEVVADLRSIRQIALNILSNAVRYTQA 1112
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHY--MMHSLTPF 546
GG+V I +A P+GD ++ + D G M + + +L PF
Sbjct: 1113 GGQVIISTAYEPSGDIVMRVRDTGVGMSHAEIEQALKPF 1151
>gi|163859304|ref|YP_001633602.1| sensor histidine kinase TctE [Bordetella petrii DSM 12804]
gi|163263032|emb|CAP45335.1| sensor histidine kinase TctE [Bordetella petrii]
Length = 525
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 440 APLKQNGIRP--CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVE--EPALRQA 495
APL ++G+ P ++++V + A+ P A + RQ++L + SL V + + LR+A
Sbjct: 354 APLSEDGLAPERVDLAEVAQGVIRALLPAA--RARQIDLGLEASSLPVCIPGVDWLLREA 411
Query: 496 LSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
LSNL++ A+ T +V V A A + ++D+GP M
Sbjct: 412 LSNLVDNAIRYTAPASQV-TVRVYADERYARLTVEDNGPGM 451
>gi|86747590|ref|YP_484086.1| sensor signal transduction histidine kinase [Rhodopseudomonas
palustris HaA2]
gi|86570618|gb|ABD05175.1| signal transduction histidine kinase [Rhodopseudomonas palustris
HaA2]
Length = 599
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 7/119 (5%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
L Q +SNL+ A ++ GGKV+IV + +V+DD+GP + E F
Sbjct: 484 LGQVISNLLSNAQSFSREGGKVQIVCRRRKT-EIEIVVDDEGPGIRDDAFDKI---FERF 539
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS---PWKTDAALGSGGTRVELWLPS 607
+ N GL+++R+++E++G +R + P + G R + LPS
Sbjct: 540 YTDRPHQGFGQNSGLGLSISRQIVEAHGGKIRAENRPGPRDAEGEPTIAGARFVVRLPS 598
>gi|86157538|ref|YP_464323.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85774049|gb|ABC80886.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 463
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL--VAVEEPALRQALSNLIEGALM 505
RP + V+ + + PLA Q+R V L+ + V + + Q LSNL+ AL
Sbjct: 318 RPEPLDAVVEEALAGLSPLA--QERGVALAADTAGAREPVPCDRERILQVLSNLVGNALQ 375
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565
GG V + +A APA +A V + DDGP + P + +
Sbjct: 376 FAARGGHVTVRAALAPA-EARVEVRDDGP-------GIAPAQLRRVFDRYWKSGSRRGSG 427
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGT 599
GL++A+ ++E++G + V ++ LG+G T
Sbjct: 428 LGLSIAKGIVEAHGGRIEV------ESQLGAGST 455
>gi|395648298|ref|ZP_10436148.1| putative two-component system sensor kinase [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 461
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E Q + + E L + LSNL+
Sbjct: 313 IAEGGAQRLDLSQLARELGMAMAPLAHA--RGVALALEADQPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ P A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVTTP---AVLEVEDDGPGI 402
>gi|378949339|ref|YP_005206827.1| protein TctE [Pseudomonas fluorescens F113]
gi|359759353|gb|AEV61432.1| TctE [Pseudomonas fluorescens F113]
Length = 463
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ +AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVSAP---AVLEVEDDGPGI 402
>gi|221198619|ref|ZP_03571664.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
CGD2M]
gi|221207850|ref|ZP_03580857.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
CGD2]
gi|221172347|gb|EEE04787.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
CGD2]
gi|221181070|gb|EEE13472.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
CGD2M]
Length = 528
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP V D++ E+V+P +++Q+ + + +++ ++ L Q L NL++ A +
Sbjct: 231 RPVTVRDLVARGVESVQPKLATREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFS 290
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GG+++I + A+ VID + S+ +LF + T F G
Sbjct: 291 PRGGRIDISARVEGPVVAIRVIDRGVGIAPGALESIF----DLFEQEGAAHRPTDGFGLG 346
Query: 568 LTVARELLESYGCVV 582
L + R +E +G ++
Sbjct: 347 LAICRSFVELHGGMI 361
>gi|88798652|ref|ZP_01114236.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Reinekea
blandensis MED297]
gi|88778752|gb|EAR09943.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Reinekea
sp. MED297]
Length = 452
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
G N+ D++ DL E P+ + RQV L+ V + L QA +N+++ A
Sbjct: 307 GFESLNLDDLMADLIEMYVPV--FEDRQVRLTLNGHCGTVHGDRHLLFQAFANVLDNAAK 364
Query: 506 RTQVGGKVEI-VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNF 564
T GG+V + VS D +VI D GP + SL E+ T F
Sbjct: 365 FTPPGGEVRLEVSRNDDVID--LVIQDSGPGIAEA--SLERVFERFHREDSARS--TQGF 418
Query: 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GL++ R ++E + VR+ + G RV + LP
Sbjct: 419 GLGLSLVRAIIERHDGQVRLSNHH---------GLRVAIRLP 451
>gi|443316393|ref|ZP_21045838.1| histidine kinase,KaiB domain-containing protein,histidine kinase
[Leptolyngbya sp. PCC 6406]
gi|442783993|gb|ELR93888.1| histidine kinase,KaiB domain-containing protein,histidine kinase
[Leptolyngbya sp. PCC 6406]
Length = 396
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQ 508
N+ +L D+ E++ H Q+ +++ E+ Q L V ++ +++ L NL++ A+ T
Sbjct: 247 TNLRLLLVDVLESMNSKIHHNQQTLDV-EIPQDLPHVYIDASQVQRVLCNLLDNAIKYTP 305
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSEN--MVEDNMTWNFVA 566
VGG + I + V+I D GP + T ++F E+ + D +
Sbjct: 306 VGGHISICALHRTTQKVQVIISDTGPGIP------TENQEKIFEESFRLQRDEAKDGYGL 359
Query: 567 GLTVARELLES-YGCV 581
GL + R +L + YG +
Sbjct: 360 GLALCRRILRAHYGRI 375
>gi|357416443|ref|YP_004929463.1| two-component system heavy metal sensor histidine kinase
[Pseudoxanthomonas spadix BD-a59]
gi|355334021|gb|AER55422.1| two-component system heavy metal sensor histidine kinase
[Pseudoxanthomonas spadix BD-a59]
Length = 470
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV 509
N+ D + LFE L +++R V+L QS+ V + LR+ALSNLI A+ T
Sbjct: 323 VNLKDAIQGLFEYFEAL--VEERGVKLEVRGQSVPVRGDREMLRRALSNLISNAIRYTPN 380
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLT 569
G ++ D VVI + P L+ + + + GL
Sbjct: 381 G---RTITVRFMQNDRDVVISVENPGEKIPTEELSRIFNRFYRVDHAAHRKGEGAGLGLA 437
Query: 570 VARELLESYGCVVRVIS 586
+ + ++E++G V V+S
Sbjct: 438 IVKSIVEAHGGSVSVLS 454
>gi|260776874|ref|ZP_05885768.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
gi|260606540|gb|EEX32814.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
Length = 499
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 450 CNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
C V + + +L+E V M+++Q+ L+ L L V + L Q L NLI+ A +
Sbjct: 354 CTVINSVHELYEPV-----MEEKQLNLTLNLVSDLQVMANDELLFQVLCNLIDNAAKFSP 408
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE 553
+GG +EI + A L+ I D G + SLT G + F +
Sbjct: 409 IGGAIEI-NTYADNDHILLTIADQGGGVE--AQSLTKLGQKFFRQ 450
>gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum
SW]
gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum
SW]
Length = 693
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 484 LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH--YMMH 541
LV +E AL+Q LSNL+ A+ T GG++ + G L+ + D G M + H
Sbjct: 548 LVRADETALKQILSNLLSNAVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAH 607
Query: 542 SLTPFGSELFSENMVEDNMTWNFVA---GLTVARELLESYGCVVRVISPWKTDAALGSGG 598
++ PF VE +T + GL + + L++ +G + S DA G
Sbjct: 608 AMEPF-------RQVEKPLTRHAGGAGLGLPLVKALVDLHGGSFELES--TPDA-----G 653
Query: 599 TRVELWLPS 607
T +WLP+
Sbjct: 654 TLASVWLPA 662
>gi|398941905|ref|ZP_10669998.1| signal transduction histidine kinase [Pseudomonas sp. GM41(2012)]
gi|398161270|gb|EJM49506.1| signal transduction histidine kinase [Pseudomonas sp. GM41(2012)]
Length = 461
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 442 LKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLI 500
+ + G + ++S + +L A+ PLAH R V L+ E + + + E L + LSNL+
Sbjct: 313 IAEGGAQLLDLSQLARELGMAMAPLAHA--RGVALALEADEPVWLRGEPTLLNELLSNLV 370
Query: 501 EGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ AL T GG V I+ AP A++ ++DDGP +
Sbjct: 371 DNALAHTPSGGNV-ILRVTAP---AVLEVEDDGPGI 402
>gi|388565677|ref|ZP_10152160.1| GAF sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
gi|388267040|gb|EIK92547.1| GAF sensor hybrid histidine kinase [Hydrogenophaga sp. PBC]
Length = 548
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P ++++V+ + RPL ++ ++ ++ L + + L Q L+NL+ A T
Sbjct: 389 PVDLAEVMKSAIDTSRPLIDAAGHELSVALPAEPLRLHADAVRLTQVLANLLNNAAKYTP 448
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFVAG 567
GG++ + SA A+V + D+G +H M ELF++ + G
Sbjct: 449 AGGRIWL-SARREGAQAVVSVRDNGMGIHADMLDQV---FELFAQADQGTHRAQGGLGIG 504
Query: 568 LTVARELLESYGCVVRVIS 586
LT+ R L+ +G V+ S
Sbjct: 505 LTLVRSLVHLHGGTVQACS 523
>gi|374291343|ref|YP_005038378.1| Sensor histidine kinase [Azospirillum lipoferum 4B]
gi|357423282|emb|CBS86132.1| Sensor histidine kinase [Azospirillum lipoferum 4B]
Length = 572
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 452 VSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG 511
+ ++L D V LA + + + ++L V + +RQA+ N++ A+ T GG
Sbjct: 426 LGELLDDCLGLVEALALRKGVTLSGDGIDRTLQVTADGVRMRQAVLNMLSNAIKFTPSGG 485
Query: 512 KVEIVSAAAPAG-DALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFVA-- 566
V + +AA P G A++VI D G M ++ ++ PF V + +T
Sbjct: 486 AVRMEAAAGPDGRGAVIVIADTGVGMTADELLIAMEPF-------RQVHNYLTKAEAGTG 538
Query: 567 -GLTVARELLESYGCVV 582
GL +AR +E++G +
Sbjct: 539 LGLPLARRFVEAHGGTL 555
>gi|221211821|ref|ZP_03584799.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
CGD1]
gi|221167906|gb|EEE00375.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
CGD1]
Length = 528
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507
RP V D++ E+V+P +++Q+ + + +++ ++ L Q L NL++ A +
Sbjct: 231 RPVTVRDLVARGVESVQPKLATREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFS 290
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAG 567
GG+++I + A+ VID + S+ +LF + T F G
Sbjct: 291 PRGGRIDISARVEGPVVAIRVIDRGVGIAPGALESIF----DLFEQEGAAHRPTDGFGLG 346
Query: 568 LTVARELLESYGCVV 582
L + R +E +G ++
Sbjct: 347 LAICRSFVELHGGMI 361
>gi|410457906|ref|ZP_11311672.1| multi-sensor signal transduction histidine kinase [Bacillus
azotoformans LMG 9581]
gi|409932026|gb|EKN68996.1| multi-sensor signal transduction histidine kinase [Bacillus
azotoformans LMG 9581]
Length = 524
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 431 EMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEP 490
E+ L LA K + +P N++D++ L+ ++ A + + V L LS+ L + ++E
Sbjct: 366 EIIKEFLTLAKNKTSDRKPQNLNDIIEALYPLIQAEAVLSNKSVHLG-LSECLPLYLDEK 424
Query: 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD-GPDMHYMMHSLTPF 546
+RQ + N+ L +GGK+ I + +A L + D+ G D + TPF
Sbjct: 425 EIRQLILNIALNGLEAMSLGGKLTIKTYSADDCVTLEIQDEGCGIDRDVLEKIGTPF 481
>gi|73538366|ref|YP_298733.1| response regulator receiver ATP-binding protein [Ralstonia eutropha
JMP134]
gi|72121703|gb|AAZ63889.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Ralstonia
eutropha JMP134]
Length = 1152
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I ++ + D E RPLA +R+V L ++S+ + + L Q + NL+ A
Sbjct: 855 IERVDLQAAIRDAIETCRPLAEELEREVTLDVPAESIWLDADPVRLAQVIGNLLSNAYKY 914
Query: 507 TQVGGKVEIVSAAAPAGD-ALVVIDDDG 533
T+ GG V + + P GD L+ + DDG
Sbjct: 915 TEHGGHVWL--SVEPRGDEVLLRVKDDG 940
>gi|408376097|ref|ZP_11173702.1| two-component regulator sensor histidine kinase transcriptional
regulator [Agrobacterium albertimagni AOL15]
gi|407749564|gb|EKF61075.1| two-component regulator sensor histidine kinase transcriptional
regulator [Agrobacterium albertimagni AOL15]
Length = 433
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 473 QVELSELSQSLL--VAVEEPALRQALSNLIEGAL--MRTQVGGKVEIVSAAAPAGDALVV 528
+VEL ELS L V PA+ L NL+E A+ R++V +VS A D V
Sbjct: 299 KVELIELSDRALEPVGTRNPAILYGLGNLLENAVDYARSKV-----MVSVEHTAADVTVT 353
Query: 529 IDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPW 588
I+DDG + L G E + + + GL +A+ LLE G +R +
Sbjct: 354 IEDDGAG--FSAGVLQRIG-EPYVTSRQNETRAGGLGLGLFIAKTLLERSGASLR----F 406
Query: 589 KTDAALGSGGTRVELW 604
+ + GSG V +W
Sbjct: 407 ENRSPEGSGARVVVIW 422
>gi|363422094|ref|ZP_09310175.1| ATPase domain-containing protein [Rhodococcus pyridinivorans AK37]
gi|359733655|gb|EHK82647.1| ATPase domain-containing protein [Rhodococcus pyridinivorans AK37]
Length = 372
Score = 38.9 bits (89), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 17/165 (10%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVEL-SELSQSLLVAVEEPALRQALSNLIEGALMRT 507
P ++ +AVR + V L +E+ +S V V+ L Q L+NL++ AL T
Sbjct: 219 PTTTGTLVATAVDAVRE--QYDGKGVTLQAEVVESAPVTVDPDRLGQVLANLLDNALRHT 276
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM--HYMMHSLTPFGSELFSENMVEDNMTWNFV 565
GG V + + G + + D G + ++ H F + + D
Sbjct: 277 PAGGNVTVATRILGRGRTEITVTDTGAGIASDHLDHLFDRF----YRADTARDRNHGGSG 332
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSG-GTRVELWLPSPA 609
GLT+AR L+E++ + S G G G R L LP+ +
Sbjct: 333 IGLTIARALVEAHAGRIHAHSD-------GPGCGARFTLELPTAS 370
>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus sp. FS406-22]
gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
[Methanocaldococcus sp. FS406-22]
Length = 631
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELS-ELSQSLLVAVEEPALRQALSNLIEGALM 505
I+ V D++ ++ +++PL +++ +E+ ++ +L V++ + Q L NLIE A+
Sbjct: 482 IKDIKVKDMINEVLNSLQPLT--KEKNIEVKCDIEDNLTAKVDKDRIIQVLINLIENAIK 539
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
+ V G +EI A A ++I D GP +
Sbjct: 540 FSPVKGVIEI-HAFRDKNYAHIIIKDYGPGI 569
>gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
naphthalenivorans CJ2]
gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
naphthalenivorans CJ2]
Length = 930
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ 508
P +++ ++ + E VRPL + + +++ Q LV+ + L Q L+N++ A+ T
Sbjct: 630 PLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLVSGDRMRLVQVLANVLNNAVKYTP 689
Query: 509 VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSEN-MVEDNMTWNFVAG 567
GG++ + V + D+G M L ELF++ D G
Sbjct: 690 DGGRITL-RVVEDDSHLTVCVRDNGIGMS---RELLAIAFELFTQGERTSDRTQGGLGIG 745
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGS 596
L + + L+ +G VR+ S A LGS
Sbjct: 746 LALVQTLVHLHGGTVRLHS---EGAGLGS 771
>gi|109898070|ref|YP_661325.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
gi|109700351|gb|ABG40271.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
T6c]
Length = 660
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
+ P N SD++ E+ + +Q +E+ + Q L V + L Q+LSN++ A+
Sbjct: 376 LEPTNFSDIVDLTIESQQSALDTKQHTLEVVDTPQDLYVNGDSTRLVQSLSNVLNNAIKY 435
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSE-NMVEDNMTWNFV 565
T GG + + A V+I D+G + + S+ ELF++ D
Sbjct: 436 TPEGGHITL-ECVADIETVQVIISDNG---YGICPSMQGKVFELFAQVQQTLDRSQGGLG 491
Query: 566 AGLTVARELLESYGCVVRVISPWKTDAALGSG 597
GL + + L++ +G + V S LG G
Sbjct: 492 IGLNIVQRLVQMHGGSISVSS-----QGLGHG 518
>gi|157369750|ref|YP_001477739.1| integral membrane sensor signal transduction histidine kinase
[Serratia proteamaculans 568]
gi|157321514|gb|ABV40611.1| integral membrane sensor signal transduction histidine kinase
[Serratia proteamaculans 568]
Length = 488
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRT 507
P ++S+++ D+F+ A +Q+++ L++++ + LV + + + L+NL++ A+ T
Sbjct: 342 PFSLSELVQDVFQKFELAAEARQQRL-LADITPGIPLVFADVSMIERVLTNLLDNAIRHT 400
Query: 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
GG++E V AG LV ++D GP +
Sbjct: 401 PQGGEIE-VRLWQQAGKVLVQVNDSGPGI 428
>gi|334121038|ref|ZP_08495113.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
gi|333455527|gb|EGK84173.1| multi-sensor hybrid histidine kinase [Microcoleus vaginatus FGP-2]
Length = 1783
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMR 506
I P +++ V+G E VR A ++ Q+ V + L+Q + NL+ A+
Sbjct: 1481 IAPVDLAGVIGAAIETVRLAAEVKSIQISTQFAPNLGPVLGDAGKLQQVVWNLLSNAVKF 1540
Query: 507 TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVA 566
T GGK+++V +A + + D G + P+ + F + + MT F
Sbjct: 1541 TPPGGKIQVVLDRVDT-NAQITVTDTGKGIE---PDFLPYVFDYFRQ--ADSTMTRKFGG 1594
Query: 567 ---GLTVARELLESYGCVVRVISP 587
GL + R L+E +G V+ SP
Sbjct: 1595 LGLGLAIVRHLVELHGGTVKSDSP 1618
>gi|221065615|ref|ZP_03541720.1| histidine kinase [Comamonas testosteroni KF-1]
gi|220710638|gb|EED66006.1| histidine kinase [Comamonas testosteroni KF-1]
Length = 452
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELF 551
LR+ + NL++ A+ Q GG+V + ++P L+ +DDDGP + P E F
Sbjct: 351 LRELIGNLVDNAIRYGQSGGRVTLSLQSSP---VLLAVDDDGPGIPAQER---PLVLERF 404
Query: 552 SENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 585
+D GL + +E+ +G V+R++
Sbjct: 405 YRG--QDGSGDGCGLGLPIVKEIAARHGAVLRIL 436
>gi|71906820|ref|YP_284407.1| sensor histidine kinase [Dechloromonas aromatica RCB]
gi|71846441|gb|AAZ45937.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
region:Histidine kinase A, N-terminal [Dechloromonas
aromatica RCB]
Length = 469
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 448 RPCNVSDVLGDLFEAVRPLAHMQQ--RQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505
RP + LG L E++ Q R ++L ++S +V+ E LR+ LSNLI+ AL
Sbjct: 312 RPVD----LGKLLESIASGWFDQALARNIDLGFEAESAVVSGSEWMLREMLSNLIDNALR 367
Query: 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536
T GG V + S A G + ++D+GP +
Sbjct: 368 YTPDGGTVTVRSGLAD-GRPFIEVEDNGPGI 397
>gi|408824644|ref|ZP_11209534.1| two-component response regulator sensor histidine kinase fusion
protein transcriptional regulator [Pseudomonas
geniculata N1]
Length = 760
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 20/164 (12%)
Query: 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRT 507
PC+V + EA+RP A + ++L + +VA++ LRQ + NL+ AL T
Sbjct: 371 PCDVGQLCARALEAIRPEALRRGLSLQLDRTPDPAPVVALDADGLRQIVDNLLGNALKFT 430
Query: 508 QVGG---KVEIVSAAAPAGDALVVIDDD-GPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563
VGG ++++ A +P L VID G + PF ED
Sbjct: 431 DVGGIEVRLQLSPALSPRELLLDVIDSGIGIAPAQLALLFRPF-------QQSEDGQRRG 483
Query: 564 FVA-GLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606
GLT+AREL + G + V S + G+R L LP
Sbjct: 484 GTGLGLTIARELAVAMGGNLTVHS-------VHGRGSRFTLRLP 520
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,214,632,112
Number of Sequences: 23463169
Number of extensions: 369637210
Number of successful extensions: 1185333
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 1351
Number of HSP's that attempted gapping in prelim test: 1184354
Number of HSP's gapped (non-prelim): 1905
length of query: 621
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 472
effective length of database: 8,863,183,186
effective search space: 4183422463792
effective search space used: 4183422463792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)