BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007012
(621 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O31671|KIND_BACSU Sporulation kinase D OS=Bacillus subtilis (strain 168) GN=kinD PE=1
SV=1
Length = 506
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 21/162 (12%)
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQV 509
++ D++G++ + ++ +VEL L+ Q LLV + ++Q + N+ + L
Sbjct: 362 SLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLVKCTKDHIKQVILNVAKNGLESMPE 421
Query: 510 GGKVEIVSAAAPAGDALVVIDDDGPDMHYMM--HSLTPFGSELFSENMVEDNMTWNFVAG 567
GGK+ I S A A++ + D+G + M H PF + ++ T G
Sbjct: 422 GGKLTI-SLGALDKKAIIKVVDNGEGISQEMLDHIFLPFVTS-------KEKGTG---LG 470
Query: 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609
L V + ++ YG + + S + GT V + LP A
Sbjct: 471 LVVCKRIVLMYGGSIHIESEVRR-------GTEVTITLPVSA 505
>sp|Q8FK37|CUSS_ECOL6 Sensor kinase CusS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=cusS PE=3 SV=1
Length = 480
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532
VEL + VA + LR+ALSNL+ AL T G E + D LV + +
Sbjct: 357 GVELRFVGDECQVAGDPLMLRRALSNLLSNALRYTPTG---ETIVVRCQTVDHLVQVTVE 413
Query: 533 GP 534
P
Sbjct: 414 NP 415
>sp|P45608|PHOR_KLEPN Phosphate regulon sensor protein PhoR OS=Klebsiella pneumoniae
GN=phoR PE=3 SV=1
Length = 431
Score = 36.2 bits (82), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q + + + L V E LR A+SNL+ A+ T G ++ + P G AL +
Sbjct: 296 QEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQG-ALFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|P77485|CUSS_ECOLI Sensor kinase CusS OS=Escherichia coli (strain K12) GN=cusS PE=1
SV=1
Length = 480
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKV 513
VEL + VA + LR+ALSNL+ AL T G +
Sbjct: 357 GVELRFVGDKCQVAGDPLMLRRALSNLLSNALRYTPTGETI 397
>sp|Q7V6P7|SASA_PROMM Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9313) GN=sasA PE=3 SV=1
Length = 370
Score = 36.2 bits (82), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V ++ +RQ L NL+E AL T+ GG+V + + V I D+GP +
Sbjct: 251 VFADQRRMRQVLLNLLENALKFTEDGGEVSLTMLHRTSHWVQVSICDNGPGIPEDEQERI 310
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ V T F GL+V R ++E +G + V+S
Sbjct: 311 FLDRVRLPQTSVS---TSGFGVGLSVCRRIVEVHGGKIWVVS 349
>sp|Q8XBY4|CUSS_ECO57 Sensor kinase CusS OS=Escherichia coli O157:H7 GN=cusS PE=3 SV=1
Length = 482
Score = 35.8 bits (81), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 363 ELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPL- 421
EL+ V L+ +++ E+ + +N + IR+ ++N ++ S K L
Sbjct: 240 ELEQLV-LSFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELE 298
Query: 422 -----SLDTPAKDIEMPMPPLALAPLKQNGIRP----CNVSDVLGDLFEAVRPLAHMQQR 472
+L+ + +M L LA N + P N++D +G +F+ LA + R
Sbjct: 299 DVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLADEVGKVFDFFEALA--EDR 356
Query: 473 QVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528
VEL + VA + LR+ALSNL+ AL T P G+A+VV
Sbjct: 357 GVELQFVGDECQVAGDPLMLRRALSNLLSNALRYT-------------PPGEAIVV 399
>sp|A2C884|SASA_PROM3 Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain MIT 9303) GN=sasA PE=3 SV=1
Length = 370
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V ++ +RQ L NL+E AL T+ GG+V + + V I D+GP +
Sbjct: 251 VFADQRRMRQVLLNLLENALKFTEDGGQVSLSMLHRTSQWVQVSICDNGPGIPEDEQERI 310
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ V T F GL+V R ++E +G + V+S
Sbjct: 311 FLDRVRLPQTSV---TTSGFGVGLSVCRRIVEVHGGKIWVVS 349
>sp|P45609|PHOR_SHIDY Phosphate regulon sensor protein PhoR OS=Shigella dysenteriae
GN=phoR PE=3 SV=1
Length = 431
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q E+ +L V+ E LR A+SNL+ A+ T G + + P G A +
Sbjct: 296 QKKQTFTFEIDNALKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|P08400|PHOR_ECOLI Phosphate regulon sensor protein PhoR OS=Escherichia coli (strain
K12) GN=phoR PE=1 SV=1
Length = 431
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 470 QQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529
Q++Q E+ L V+ E LR A+SNL+ A+ T G + + P G A +
Sbjct: 296 QKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSV 354
Query: 530 DDDGPDM 536
+D+GP +
Sbjct: 355 EDNGPGI 361
>sp|Q0V0I4|PAN3_PHANO PAB-dependent poly(A)-specific ribonuclease subunit PAN3
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAN3 PE=3 SV=2
Length = 669
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 489 EPALR--QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP------DMHYMM 540
EPA+R QA + G+++ E + A +L+++ D P D H+
Sbjct: 308 EPAIRSAQAWKRIFNGSIVTIH-----EAFTTRAFGDSSLIIVTDYHPNSKSLADEHFK- 361
Query: 541 HSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 590
+ F + + V +++ W ++ + A + + G R+ISP KT
Sbjct: 362 -PMQRFNGRQATSSHVPEHVLWGYIVQIASALKAIHGSGLAARLISPSKT 410
>sp|A6L078|RSMH_BACV8 Ribosomal RNA small subunit methyltransferase H OS=Bacteroides
vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
GN=rsmH PE=3 SV=1
Length = 304
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 436 PLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA 495
LA A +K G++ +GD E ++PL ++ + EL+++ Q+L + V + +A
Sbjct: 162 KLASAIVKARGVKQIVT---IGDFLEVIKPLFGREREKKELAKVFQALRIEVNQEM--EA 216
Query: 496 LSNLIEGALMRTQVGGKVEIVS 517
L ++ A + GG++ +++
Sbjct: 217 LKEMLYAATKALKPGGRLVVIT 238
>sp|Q7U871|SASA_SYNPX Adaptive-response sensory-kinase SasA OS=Synechococcus sp. (strain
WH8102) GN=sasA PE=3 SV=1
Length = 383
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V ++ +RQ L NL+E AL T GG + + + V + D GP + T
Sbjct: 251 VFADQRRMRQVLLNLLENALKYTGNGGHITLTMLHRTSQRVEVSVCDSGPGIP------T 304
Query: 545 PFGSELFSENM---VEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+F + + + T F GL+V R ++E +G + V+S
Sbjct: 305 EEQQRIFLDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVS 349
>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2
Length = 2701
Score = 33.5 bits (75), Expect = 4.8, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 289 AMAYVMDQKSMLLQQSSWQNNAR---MSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYD 345
A+ + K+ LQ+ + + R M L EQ+ S++QT+ + +L ++ + + +
Sbjct: 863 ALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDSTLQTVEREKTLITEKLQQTLE 922
Query: 346 IVEDIMVQGDRLRGTLQELQDAVFLTKANI---VRYNEETLKKMNNSAYS---HPESI-- 397
V+ + + D L+ + LQ K++I V N +T +++ N+ S H E+I
Sbjct: 923 EVKTLTQEKDDLKQLQESLQIERDQLKSDIHDTVNMNIDTQEQLRNALESLKQHQETINT 982
Query: 398 -RSQLSNNFSR-----ENSG-NKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPC 450
+S++S SR EN+G K + K + +D +D+E A +K N
Sbjct: 983 LKSKISEEVSRNLHMEENTGETKDEFQQKMVGIDK-KQDLEAKNTQTLTADVKDN----- 1036
Query: 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIE 501
++ E R + + Q + EL ++ +S V E+ L+ L IE
Sbjct: 1037 -------EIIEQQRKIFSLIQEKNELQQMLES--VIAEKEQLKTDLKENIE 1078
>sp|A3MUA4|SYFA_PYRCJ Phenylalanine--tRNA ligase alpha subunit OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=pheS PE=3 SV=1
Length = 488
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 429 DIEMPMPPLALAPLKQNGIRP-CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV 487
+++ P PLALA L + G++P V ++ D++E V LA ++++Q L++L + +
Sbjct: 91 ELKHPEAPLALANLAKLGVKPRGGVIELSRDVYERV--LASIEEKQRALAQLDSAPPDLL 148
Query: 488 EEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPF 546
+E LR+ L +E L+ + ++ V PA + +D + + L PF
Sbjct: 149 QE-FLRRKLVKKVEKTLIYVKAAAPLDSVK---PAEVKTALTSEDIATGRWREYYLKPF 203
>sp|Q7BWI3|SASA_PROMA Adaptive-response sensory-kinase SasA OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=sasA PE=3 SV=1
Length = 381
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Query: 485 VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLT 544
V ++ ++Q L NLIE AL + G VEI + + D GP +
Sbjct: 253 VFADQSRMKQVLLNLIENALKFSNDGDTVEITMLHRTNQWVQISVSDKGPGIPEEEQQRI 312
Query: 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586
+ N T F GL+V R ++E +G + V+S
Sbjct: 313 FLDRVRLPQT---SNETSGFGIGLSVCRRIVEVHGGKIWVVS 351
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,606,092
Number of Sequences: 539616
Number of extensions: 8777352
Number of successful extensions: 28079
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 28062
Number of HSP's gapped (non-prelim): 50
length of query: 621
length of database: 191,569,459
effective HSP length: 124
effective length of query: 497
effective length of database: 124,657,075
effective search space: 61954566275
effective search space used: 61954566275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)