Query 007012
Match_columns 621
No_of_seqs 561 out of 3680
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2205 KdpD Osmosensitive K+ 100.0 6.5E-37 1.4E-41 339.9 34.2 343 118-610 526-882 (890)
2 COG5002 VicK Signal transducti 100.0 6.4E-34 1.4E-38 289.0 18.4 222 306-611 223-452 (459)
3 PRK09303 adaptive-response sen 100.0 2E-31 4.4E-36 288.2 29.7 234 295-609 138-379 (380)
4 PRK10490 sensor protein KdpD; 100.0 2.1E-30 4.5E-35 307.2 40.4 287 195-610 590-885 (895)
5 PRK13837 two-component VirA-li 100.0 3.8E-29 8.3E-34 295.6 36.0 211 309-609 451-677 (828)
6 PRK10618 phosphotransfer inter 100.0 1.1E-29 2.4E-34 299.0 30.6 234 294-609 436-674 (894)
7 TIGR02916 PEP_his_kin putative 100.0 4.8E-28 1E-32 280.6 38.9 345 112-606 315-679 (679)
8 PRK11006 phoR phosphate regulo 100.0 8.9E-29 1.9E-33 271.3 26.5 220 308-609 204-425 (430)
9 PRK10841 hybrid sensory kinase 100.0 2.6E-28 5.7E-33 290.4 30.5 235 293-609 432-669 (924)
10 PRK10364 sensor protein ZraS; 100.0 1.5E-27 3.3E-32 263.4 30.6 211 309-609 238-450 (457)
11 PRK11091 aerobic respiration c 100.0 3.6E-28 7.8E-33 285.6 26.8 227 303-610 278-508 (779)
12 TIGR02956 TMAO_torS TMAO reduc 100.0 1.7E-27 3.7E-32 285.8 30.8 227 300-610 456-686 (968)
13 TIGR02938 nifL_nitrog nitrogen 100.0 5E-27 1.1E-31 258.3 31.2 146 447-607 343-494 (494)
14 COG3852 NtrB Signal transducti 100.0 1.4E-27 3E-32 240.1 23.8 210 308-609 132-356 (363)
15 PRK15347 two component system 100.0 4.2E-27 9E-32 280.9 30.1 225 299-609 389-616 (921)
16 COG4191 Signal transduction hi 100.0 8.2E-27 1.8E-31 253.0 28.6 212 309-608 385-602 (603)
17 PRK11107 hybrid sensory histid 100.0 6.7E-27 1.4E-31 278.9 30.1 226 303-609 288-520 (919)
18 PRK10604 sensor protein RstB; 100.0 8.6E-27 1.9E-31 256.2 28.7 228 293-610 197-426 (433)
19 PRK11466 hybrid sensory histid 100.0 1.1E-26 2.4E-31 277.3 30.8 226 300-609 436-664 (914)
20 PRK10755 sensor protein BasS/P 100.0 2.2E-26 4.8E-31 245.6 29.5 222 299-609 128-352 (356)
21 PRK10815 sensor protein PhoQ; 100.0 5.5E-26 1.2E-30 253.4 31.4 220 302-610 260-481 (485)
22 PRK10549 signal transduction h 99.9 2E-25 4.3E-30 246.1 31.3 231 297-610 229-461 (466)
23 PRK09959 hybrid sensory histid 99.9 6.1E-26 1.3E-30 278.3 28.5 229 299-609 703-938 (1197)
24 PRK09835 sensor kinase CusS; P 99.9 3.1E-25 6.8E-30 245.4 31.2 233 293-608 247-481 (482)
25 PRK10337 sensor protein QseC; 99.9 1E-25 2.2E-30 247.6 27.1 220 299-605 228-449 (449)
26 TIGR01386 cztS_silS_copS heavy 99.9 1.6E-25 3.6E-30 245.2 28.3 228 295-606 228-457 (457)
27 PRK09467 envZ osmolarity senso 99.9 4.4E-25 9.6E-30 241.4 27.1 214 298-608 219-434 (435)
28 PRK11073 glnL nitrogen regulat 99.9 5.8E-25 1.3E-29 233.4 27.1 206 308-607 130-347 (348)
29 TIGR03785 marine_sort_HK prote 99.9 1.2E-24 2.6E-29 252.4 31.3 230 295-606 472-703 (703)
30 COG4251 Bacteriophytochrome (l 99.9 4.5E-25 9.8E-30 238.9 25.5 235 292-613 508-747 (750)
31 TIGR02966 phoR_proteo phosphat 99.9 1.1E-24 2.5E-29 227.2 27.0 217 308-605 114-333 (333)
32 PRK09470 cpxA two-component se 99.9 3.1E-24 6.6E-29 235.9 30.4 229 294-609 229-459 (461)
33 PRK11360 sensory histidine kin 99.9 5.6E-24 1.2E-28 239.6 29.4 212 308-609 390-603 (607)
34 PRK11100 sensory histidine kin 99.9 3.4E-23 7.3E-28 227.8 29.1 216 309-608 257-474 (475)
35 COG5000 NtrY Signal transducti 99.9 1.3E-23 2.9E-28 227.3 22.7 208 309-607 487-708 (712)
36 PRK13557 histidine kinase; Pro 99.9 1.4E-22 3E-27 226.6 28.8 214 308-609 163-396 (540)
37 COG0642 BaeS Signal transducti 99.9 8.5E-22 1.8E-26 202.9 27.2 217 307-610 114-332 (336)
38 PRK13560 hypothetical protein; 99.9 2.9E-22 6.2E-27 234.8 25.4 206 299-609 596-805 (807)
39 PRK11086 sensory histidine kin 99.9 1.9E-20 4.1E-25 210.0 26.4 127 466-610 406-538 (542)
40 PRK11644 sensory histidine kin 99.9 1E-19 2.2E-24 203.5 28.7 191 309-607 303-494 (495)
41 PRK15053 dpiB sensor histidine 99.9 1.4E-19 3E-24 204.1 28.2 129 467-610 406-542 (545)
42 COG4192 Signal transduction hi 99.8 3.6E-19 7.8E-24 186.8 23.3 210 309-609 452-668 (673)
43 PRK10600 nitrate/nitrite senso 99.8 3.2E-17 7E-22 186.5 35.1 264 200-616 298-565 (569)
44 PRK13559 hypothetical protein; 99.8 1.4E-17 2.9E-22 178.1 23.3 185 308-608 170-360 (361)
45 COG3290 CitA Signal transducti 99.8 4.2E-17 9.2E-22 176.8 26.9 131 463-610 397-534 (537)
46 PRK10935 nitrate/nitrite senso 99.8 8.6E-16 1.9E-20 173.9 33.3 131 448-609 430-561 (565)
47 PF02518 HATPase_c: Histidine 99.7 6.8E-18 1.5E-22 150.3 11.1 108 487-607 1-110 (111)
48 PRK10547 chemotaxis protein Ch 99.6 1.9E-14 4.1E-19 164.4 20.9 145 450-609 343-525 (670)
49 COG3850 NarQ Signal transducti 99.4 6.2E-11 1.3E-15 128.4 28.7 230 273-609 336-570 (574)
50 COG0643 CheA Chemotaxis protei 99.4 3.6E-11 7.9E-16 138.3 21.9 146 449-609 389-575 (716)
51 smart00387 HATPase_c Histidine 99.4 1.2E-11 2.5E-16 107.1 12.8 108 487-607 1-110 (111)
52 COG3920 Signal transduction hi 99.4 9E-10 1.9E-14 110.6 28.1 133 448-609 79-217 (221)
53 COG3851 UhpB Signal transducti 99.3 9.7E-10 2.1E-14 113.7 24.3 127 447-607 367-494 (497)
54 PRK04184 DNA topoisomerase VI 99.3 1.4E-11 3.1E-16 136.7 11.1 115 485-608 30-153 (535)
55 COG4585 Signal transduction hi 99.3 2.8E-09 6.1E-14 114.9 27.8 124 451-607 241-365 (365)
56 cd00075 HATPase_c Histidine ki 99.2 2.9E-10 6.4E-15 96.7 11.3 100 492-605 1-103 (103)
57 PRK14868 DNA topoisomerase VI 99.2 2.4E-10 5.2E-15 129.6 13.8 117 470-588 23-146 (795)
58 TIGR01925 spIIAB anti-sigma F 99.1 4.7E-10 1E-14 103.8 12.4 98 488-605 36-136 (137)
59 TIGR01052 top6b DNA topoisomer 99.1 4.8E-10 1E-14 123.4 11.8 102 485-588 22-129 (488)
60 COG3275 LytS Putative regulato 99.0 1.6E-07 3.6E-12 100.7 27.2 132 447-610 414-554 (557)
61 PRK03660 anti-sigma F factor; 99.0 3.7E-09 8.1E-14 98.7 13.1 103 488-610 36-141 (146)
62 PRK14867 DNA topoisomerase VI 99.0 3.4E-09 7.5E-14 120.0 11.9 111 489-608 34-150 (659)
63 COG4564 Signal transduction hi 98.8 1.3E-06 2.8E-11 90.0 23.4 130 449-609 319-449 (459)
64 PF14501 HATPase_c_5: GHKL dom 98.8 9.1E-08 2E-12 83.9 13.1 96 488-606 2-100 (100)
65 PRK04069 serine-protein kinase 98.8 8.9E-08 1.9E-12 91.5 13.6 100 488-607 39-143 (161)
66 TIGR01924 rsbW_low_gc serine-p 98.7 4.2E-07 9.2E-12 86.7 13.7 99 490-608 41-144 (159)
67 KOG0519 Sensory transduction h 98.6 8.4E-09 1.8E-13 121.3 1.3 153 447-611 289-492 (786)
68 PF00512 HisKA: His Kinase A ( 98.6 1.7E-07 3.8E-12 75.8 7.8 60 308-367 2-62 (68)
69 KOG0787 Dehydrogenase kinase [ 98.5 1.5E-06 3.2E-11 91.1 13.2 153 448-609 214-382 (414)
70 COG2972 Predicted signal trans 98.5 4.5E-05 9.7E-10 85.0 25.7 97 492-609 351-454 (456)
71 PF13581 HATPase_c_2: Histidin 98.2 2E-05 4.4E-10 71.4 11.7 93 489-604 29-124 (125)
72 COG1389 DNA topoisomerase VI, 97.8 6.2E-05 1.4E-09 80.9 8.7 98 489-588 34-137 (538)
73 smart00388 HisKA His Kinase A 97.8 8.1E-05 1.8E-09 58.0 7.0 58 309-367 3-60 (66)
74 COG2172 RsbW Anti-sigma regula 97.8 0.00026 5.6E-09 66.7 11.4 88 488-588 37-128 (146)
75 cd00082 HisKA Histidine Kinase 97.7 0.00017 3.6E-09 55.7 8.1 59 308-366 4-62 (65)
76 TIGR00585 mutl DNA mismatch re 97.5 0.00049 1.1E-08 72.9 10.4 89 490-587 21-113 (312)
77 PF13492 GAF_3: GAF domain; PD 96.9 0.014 3.1E-07 51.8 12.2 119 116-292 1-127 (129)
78 TIGR01817 nifA Nif-specific re 96.6 0.044 9.5E-07 62.5 15.6 147 110-309 13-173 (534)
79 PRK00095 mutL DNA mismatch rep 96.3 0.016 3.4E-07 67.2 9.9 55 491-549 22-78 (617)
80 PF13589 HATPase_c_3: Histidin 96.1 0.0027 5.9E-08 58.9 1.7 99 493-606 4-106 (137)
81 PRK05559 DNA topoisomerase IV 95.7 0.02 4.3E-07 66.4 6.8 84 489-576 35-130 (631)
82 PF01590 GAF: GAF domain; Int 95.6 0.12 2.5E-06 47.4 10.7 99 116-220 1-127 (154)
83 PF13185 GAF_2: GAF domain; PD 95.2 0.37 8E-06 43.7 12.3 123 114-292 1-147 (148)
84 TIGR01059 gyrB DNA gyrase, B s 94.9 0.06 1.3E-06 62.8 7.7 85 488-576 27-123 (654)
85 smart00065 GAF Domain present 94.7 1.1 2.3E-05 39.0 13.5 98 116-220 1-112 (149)
86 PRK11061 fused phosphoenolpyru 93.8 0.55 1.2E-05 55.7 12.5 136 110-298 11-160 (748)
87 PRK05644 gyrB DNA gyrase subun 93.6 0.11 2.3E-06 60.4 5.9 85 488-576 34-130 (638)
88 PRK15429 formate hydrogenlyase 92.9 3.4 7.4E-05 48.7 17.1 132 111-294 194-343 (686)
89 PRK05218 heat shock protein 90 92.6 0.23 5E-06 57.5 6.8 42 495-539 30-87 (613)
90 smart00433 TOP2c Topoisomerase 92.4 0.15 3.3E-06 58.8 4.9 43 493-539 3-47 (594)
91 COG0323 MutL DNA mismatch repa 92.1 0.12 2.6E-06 60.0 3.7 53 492-548 24-78 (638)
92 COG1956 GAF domain-containing 92.0 3.7 8.1E-05 39.0 12.6 22 199-220 113-134 (163)
93 PRK14939 gyrB DNA gyrase subun 91.9 0.33 7.2E-06 57.2 6.9 83 490-576 36-130 (756)
94 PRK05022 anaerobic nitric oxid 91.2 5.4 0.00012 45.3 15.6 146 110-309 12-173 (509)
95 PLN03237 DNA topoisomerase 2; 90.9 0.35 7.5E-06 60.2 6.0 84 492-578 78-174 (1465)
96 PRK14083 HSP90 family protein; 90.6 0.22 4.8E-06 57.4 3.7 44 494-539 26-77 (601)
97 PF10090 DUF2328: Uncharacteri 89.8 6.1 0.00013 38.6 12.6 123 448-586 51-173 (182)
98 TIGR01055 parE_Gneg DNA topois 89.6 0.46 1E-05 55.1 5.3 82 493-578 32-125 (625)
99 PTZ00108 DNA topoisomerase 2-l 87.3 0.78 1.7E-05 57.2 5.5 86 490-578 60-157 (1388)
100 PLN03128 DNA topoisomerase 2; 86.7 0.69 1.5E-05 56.9 4.5 46 490-539 55-100 (1135)
101 TIGR01058 parE_Gpos DNA topois 86.7 0.59 1.3E-05 54.3 3.8 85 489-577 32-128 (637)
102 PTZ00130 heat shock protein 90 85.8 0.98 2.1E-05 53.4 4.9 17 523-539 133-149 (814)
103 COG5385 Uncharacterized protei 84.9 35 0.00075 32.8 13.7 98 494-606 116-213 (214)
104 COG3605 PtsP Signal transducti 83.6 4.2 9.1E-05 46.1 8.3 100 115-220 16-128 (756)
105 COG0326 HtpG Molecular chapero 82.9 1.1 2.5E-05 51.1 3.8 27 512-539 62-88 (623)
106 COG2203 FhlA FOG: GAF domain [ 80.3 7.1 0.00015 35.1 7.6 21 200-220 115-135 (175)
107 KOG1979 DNA mismatch repair pr 77.0 2.2 4.9E-05 48.0 3.5 52 494-549 30-83 (694)
108 PTZ00272 heat shock protein 83 76.7 3.3 7.2E-05 48.6 5.0 28 511-539 59-86 (701)
109 PHA02569 39 DNA topoisomerase 72.4 2.4 5.3E-05 49.0 2.5 43 492-539 50-93 (602)
110 PRK15429 formate hydrogenlyase 69.0 53 0.0011 38.8 12.7 47 200-292 115-161 (686)
111 PF05651 Diacid_rec: Putative 68.5 36 0.00078 31.6 8.9 19 202-220 72-90 (135)
112 COG3835 CdaR Sugar diacid util 68.4 18 0.00038 38.8 7.5 18 203-220 75-92 (376)
113 KOG1978 DNA mismatch repair pr 68.1 5.8 0.00012 45.7 4.2 44 492-539 21-64 (672)
114 COG5381 Uncharacterized protei 67.0 16 0.00035 34.3 6.1 43 491-535 63-105 (184)
115 PRK13558 bacterio-opsin activa 63.4 23 0.0005 41.3 8.2 48 201-294 390-437 (665)
116 COG0187 GyrB Type IIA topoisom 63.1 4.3 9.2E-05 46.5 1.9 80 492-577 41-130 (635)
117 PTZ00109 DNA gyrase subunit b; 55.6 2.9 6.2E-05 50.0 -1.0 46 490-539 128-175 (903)
118 PF14689 SPOB_a: Sensor_kinase 52.2 54 0.0012 26.0 6.1 24 309-332 13-36 (62)
119 KOG1977 DNA mismatch repair pr 39.3 22 0.00047 41.4 2.6 54 490-548 20-75 (1142)
120 KOG0519 Sensory transduction h 38.8 80 0.0017 38.0 7.5 135 447-585 457-619 (786)
121 PF12282 H_kinase_N: Signal tr 35.2 3.4E+02 0.0074 25.3 9.7 92 121-220 23-124 (145)
122 PRK04158 transcriptional repre 34.8 3.7E+02 0.0081 27.8 10.4 24 197-220 107-130 (256)
123 KOG0355 DNA topoisomerase type 33.6 53 0.0011 39.0 4.6 49 487-539 49-100 (842)
124 PRK11477 carbohydrate diacid t 32.7 1.9E+02 0.0041 31.4 8.7 20 201-220 76-95 (385)
125 PF07536 HWE_HK: HWE histidine 26.3 3.8E+02 0.0083 22.5 7.6 22 315-336 2-23 (83)
126 PF06018 CodY: CodY GAF-like d 22.4 5.5E+02 0.012 25.0 8.8 23 198-220 106-128 (177)
No 1
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-37 Score=339.95 Aligned_cols=343 Identities=17% Similarity=0.239 Sum_probs=257.0
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeeeecccccCCcchhhhhhhhccccccCC
Q 007012 118 QRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEAALSSQQVQVV 197 (621)
Q Consensus 118 ~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (621)
..+...-...+...+ +.+..+|+.+.+. .+ +-+.||.. -...-.-+.+|....+.. .-.+.+++
T Consensus 526 ~~vl~~~~~qi~~~~--~~~v~i~l~~~~~------~~-~~~~~~~~-l~~~d~aaa~W~~~~~~~------AG~gTdTl 589 (890)
T COG2205 526 EDILAAAGQQIASLL--NQRVVILLPDDNG------KL-QPLGNPDG-LSADDRAAAQWAFENGKP------AGAGTDTL 589 (890)
T ss_pred HHHHHHHHHHHHHHh--CCceEEEEecCCc------cc-ccccCCcc-ccHHHHHHhhchhhCCCc------cccCCCCC
Confidence 344444455566666 6567799998322 23 44556643 100000133333333322 12455689
Q ss_pred CCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccCHHH
Q 007012 198 PEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQ 277 (621)
Q Consensus 198 ~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~~e~ 277 (621)
|..+.+++||...+.++|++.++. . . ++ . +.+++
T Consensus 590 pg~~~~~lPl~~~~~~~gvlgv~~-----------~-~---------~~--l-----------------------l~p~~ 623 (890)
T COG2205 590 PGAKYLYLPLKSGGKVLGVLGVEP-----------G-L---------SP--L-----------------------LAPEQ 623 (890)
T ss_pred CCCceeEeecccCCceEEEEEecC-----------C-C---------Cc--c-----------------------CChHH
Confidence 999999999999999999998882 1 0 11 1 44578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCC--CcchHHHHHH
Q 007012 278 RLNAINICRSLAMAYVMDQKSMLLQQ------SSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVED 349 (621)
Q Consensus 278 r~~~~~ia~~lala~~l~qr~~~lqq------~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~--~~~~~~~~e~ 349 (621)
+..+.+++.++|+|..-.+-..+.++ ..+-.+.+++.+||||||||++|.|.+..|...... ++...+.+..
T Consensus 624 ~rlL~a~~~q~AlAler~~L~~~~~~a~l~~e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~ 703 (890)
T COG2205 624 RRLLDAVLTQIALALERVTLAEEAEQARLAAERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSS 703 (890)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHH
Confidence 88888999999887744332222222 112238899999999999999999999999876543 3446789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccc
Q 007012 350 IMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKD 429 (621)
Q Consensus 350 I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d 429 (621)
|..++++|..++.+|.+.
T Consensus 704 I~ees~~L~rlV~NLLdm-------------------------------------------------------------- 721 (890)
T COG2205 704 IREESERLTRLVTNLLDM-------------------------------------------------------------- 721 (890)
T ss_pred HHHHHHHHHHHHHHHHhH--------------------------------------------------------------
Confidence 999999999999999553
Q ss_pred cCCCCCccccCcCCCC----CceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHh
Q 007012 430 IEMPMPPLALAPLKQN----GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALM 505 (621)
Q Consensus 430 ~~~~~ppL~la~~e~~----~~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk 505 (621)
+|++++ +.++..+.+++..++..+.... .+..+.++.+.+...+.+|...|.|||.|||+||+|
T Consensus 722 ----------TRi~sG~~~l~~~~~~veEvVg~Al~r~~k~~--~~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA~K 789 (890)
T COG2205 722 ----------TRLQSGGVNLKLDWVLVEEVVGEALQRLRKRF--TGHKIVVSVPVDLPLIHVDSPLIEQVLINLLENALK 789 (890)
T ss_pred ----------HHHhcCCcccccchhhHHHHHHHHHHHhhhhc--CCceEEEecCCCCceEecCHHHHHHHHHHHHHHHHh
Confidence 222221 3578899999999999988766 456677777777789999999999999999999999
Q ss_pred hcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEE
Q 007012 506 RTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVR 583 (621)
Q Consensus 506 ~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~ 583 (621)
|+|++..|.|.+. .+.+.+.|.|+|+|+|||++ ++||++||++..... ..|+||||+||+.|++.|||+|+
T Consensus 790 yap~~s~I~I~~~-~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~------~~G~GLGLsIc~~iv~ahgG~I~ 862 (890)
T COG2205 790 YAPPGSEIRINAG-VERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA------TRGVGLGLAICRGIVEAHGGTIS 862 (890)
T ss_pred hCCCCCeEEEEEE-EecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC------CCCccccHHHHHHHHHHcCCeEE
Confidence 9999999999995 45688999999999999998 999999999864222 23999999999999999999999
Q ss_pred EEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 584 VISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 584 v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+.+.+ + +|++|.+.||....
T Consensus 863 a~~~~------~-gGa~f~~~LP~~~~ 882 (890)
T COG2205 863 AENNP------G-GGAIFVFTLPVEED 882 (890)
T ss_pred EEEcC------C-CceEEEEEeecCCC
Confidence 99976 5 59999999999753
No 2
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-34 Score=288.97 Aligned_cols=222 Identities=17% Similarity=0.212 Sum_probs=184.6
Q ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHh
Q 007012 306 WQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS-EISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384 (621)
Q Consensus 306 ~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~-~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~ 384 (621)
++.++|+++++|||||||+++++|.+.|....-.+ +.....+..-..+.+||.+++++|...
T Consensus 223 ~ErRefvanvSHElRTPltsmksyLEALe~ga~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~l----------------- 285 (459)
T COG5002 223 RERREFVANVSHELRTPLTSMKSYLEALEEGAWEDKEIAPRFLRVTLNETERMIRLVNDLLQL----------------- 285 (459)
T ss_pred HHHHHHHHhcchhhcCchHHHHHHHHHHhcCCccChhhhhHHHHHhHHHHHHHHHHHHHHHHH-----------------
Confidence 34589999999999999999999999998764433 356677777888899999999999442
Q ss_pred hhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCC----CCceeeeHHHHHHHHH
Q 007012 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ----NGIRPCNVSDVLGDLF 460 (621)
Q Consensus 385 ~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~----~~~~~v~L~elL~~~l 460 (621)
+|.+. ...+.+++...+..++
T Consensus 286 -------------------------------------------------------sr~d~~~~qln~e~inft~fl~~ii 310 (459)
T COG5002 286 -------------------------------------------------------SRMDNARYQLNKEWINFTAFLNEII 310 (459)
T ss_pred -------------------------------------------------------ccCcchhhhhhHHHHHhHHHHHHHH
Confidence 11111 2356789999999999
Q ss_pred HHHHHHHhhcCCe-EEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 461 EAVRPLAHMQQRQ-VELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 461 ~~~~~~a~~~~i~-l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.++....++.... +.-..+..+.++..|+..+.||+.|+|.||+||+|.||+|++.+.. .+.++.|.|.|.|.|||.+
T Consensus 311 ~R~e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~Itv~~~~-~~~~v~iSI~D~G~gIPk~ 389 (459)
T COG5002 311 NRFEMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGRITVSVKQ-RETWVEISISDQGLGIPKE 389 (459)
T ss_pred HHHHHHHhhHHHHHHHhcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCeEEEEEee-eCcEEEEEEccCCCCCCch
Confidence 9998775444333 3233467788999999999999999999999999999999999954 6688999999999999988
Q ss_pred --CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCCC
Q 007012 540 --MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 611 (621)
Q Consensus 540 --~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~~ 611 (621)
+++|++||+.+..+.+..+ |+||||+|+|+|++.|||.||.+|.. |+ ||+|+++||.....
T Consensus 390 d~~~iFdrfyRvdkARsR~~g----GTGLGLaIakeiV~~hgG~iWA~s~~------gk-gtt~~ftLPy~~~~ 452 (459)
T COG5002 390 DLEKIFDRFYRVDKARSRKMG----GTGLGLAIAKEIVQAHGGRIWAESEE------GK-GTTFSFTLPYSGEA 452 (459)
T ss_pred hHHHHHHHHhhhhhhhhhcCC----CCchhHHHHHHHHHHhCCeEEEeccc------CC-ceEEEEEecccCcc
Confidence 9999999999877655543 99999999999999999999999987 76 99999999987643
No 3
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=2e-31 Score=288.21 Aligned_cols=234 Identities=17% Similarity=0.155 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCc------chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE------ISYDIVEDIMVQGDRLRGTLQELQDAV 368 (621)
Q Consensus 295 ~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~------~~~~~~e~I~~~~~rL~~ll~~L~~~i 368 (621)
.+....+++....+.+++++++|||||||++|.+++++|........ ..+++++.+.+..++|..+++++.+..
T Consensus 138 ~~~~~~l~e~~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~ 217 (380)
T PRK09303 138 RQENETLLEQLKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDEDTELKPALIEQLQDQARRQLEEIERLITDLLEVG 217 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666678999999999999999999999999986543321 134566777778888888888775431
Q ss_pred HhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCce
Q 007012 369 FLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIR 448 (621)
Q Consensus 369 ~l~~~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~ 448 (621)
..... .+ ....+
T Consensus 218 ~~~~~--------------------------------------------------------------~~------~~~~~ 229 (380)
T PRK09303 218 RTRWE--------------------------------------------------------------AL------RFNPQ 229 (380)
T ss_pred HhhcC--------------------------------------------------------------Cc------eeccc
Confidence 10000 00 01246
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEE
Q 007012 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528 (621)
Q Consensus 449 ~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~ 528 (621)
++++.+++.+++..+...+..+++.+.++.+.....+++|+..|.||+.|||+||+||++.++.|.|.+....++.+.|.
T Consensus 230 ~~~l~~ll~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~ 309 (380)
T PRK09303 230 KLDLGSLCQEVILELEKRWLAKSLEIQTDIPSDLPSVYADQERIRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVS 309 (380)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCEEEEEcCCCCCeEEeCHHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEE
Confidence 79999999999999999998899999888765556899999999999999999999999999999998754456679999
Q ss_pred EEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 529 IDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 529 V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
|.|+|+||+++ +++|++||+...+.. ..|+||||+|||++++.|||+|++.+.+ + +|++|+|+||
T Consensus 310 V~D~G~GI~~~~~~~iF~pf~~~~~~~~------~~G~GLGL~i~~~iv~~~gG~i~v~s~~------~-~Gt~f~i~lP 376 (380)
T PRK09303 310 ICDTGPGIPEEEQERIFEDRVRLPRDEG------TEGYGIGLSVCRRIVRVHYGQIWVDSEP------G-QGSCFHFTLP 376 (380)
T ss_pred EEEcCCCCCHHHHHHHccCceeCCCCCC------CCcccccHHHHHHHHHHcCCEEEEEecC------C-CccEEEEEEe
Confidence 99999999998 999999997753211 2399999999999999999999999987 6 4999999999
Q ss_pred CCC
Q 007012 607 SPA 609 (621)
Q Consensus 607 ~~~ 609 (621)
..+
T Consensus 377 ~~~ 379 (380)
T PRK09303 377 VYR 379 (380)
T ss_pred cCC
Confidence 854
No 4
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=2.1e-30 Score=307.17 Aligned_cols=287 Identities=17% Similarity=0.178 Sum_probs=214.6
Q ss_pred cCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccC
Q 007012 195 QVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFS 274 (621)
Q Consensus 195 ~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~ 274 (621)
..+|.....++||..++.++|++++.. . .... .|+
T Consensus 590 ~tl~~~~~~~lPl~~~~~~~Gvl~l~~-----------~-----------~~~~-----------------------~~~ 624 (895)
T PRK10490 590 DTLPGVPYQILPLKSAQKTYGLLAVEP-----------G-----------NLRQ-----------------------LMI 624 (895)
T ss_pred CcCCCCceEEEEEEECCEEEEEEEEec-----------C-----------cccc-----------------------cCC
Confidence 356777889999999999999998872 1 0000 144
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCC-cchHHHH
Q 007012 275 ADQRLNAINICRSLAMAYVMDQKS------MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS-EISYDIV 347 (621)
Q Consensus 275 ~e~r~~~~~ia~~lala~~l~qr~------~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~-~~~~~~~ 347 (621)
++++..++.++.+++.+....+.. ....+..+.++++++.++|||||||++|.+++++|...+..+ ....+.+
T Consensus 625 ~~~~~ll~~la~~~a~aler~~l~~~~~~~~l~~e~e~lr~~lla~isHELrtPLt~I~g~~~lL~~~l~~~~~~~~~~~ 704 (895)
T PRK10490 625 PEQQRLLETFTLLIANALERLTLTASEEQARLASEREQLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQA 704 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHhhcccccCcHHHHHH
Confidence 567777778888777665321111 111122223478999999999999999999999987655433 2334567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCc
Q 007012 348 EDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPA 427 (621)
Q Consensus 348 e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~ 427 (621)
+.|..+.+++.++++++.+...+...
T Consensus 705 ~~i~~~~~~l~~li~~LL~~srl~~~------------------------------------------------------ 730 (895)
T PRK10490 705 SEIRQQVLNTTRLVNNLLDMARIQSG------------------------------------------------------ 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC------------------------------------------------------
Confidence 78888888888888888542110000
Q ss_pred cccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhc
Q 007012 428 KDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT 507 (621)
Q Consensus 428 ~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t 507 (621)
......+++++.++++.++..+...+.. ..+.++.+.....+.+|+..|.||+.|||+||+||+
T Consensus 731 --------------~~~l~~~~~~L~eli~~~l~~l~~~~~~--~~i~l~~~~~~~~v~~D~~~L~qVL~NLL~NAik~s 794 (895)
T PRK10490 731 --------------GFNLRKEWLTLEEVVGSALQMLEPGLSG--HPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYA 794 (895)
T ss_pred --------------CCcccccccCHHHHHHHHHHHHHHHhcC--CCEEEEcCCCCeEEEECHHHHHHHHHHHHHHHHHhC
Confidence 0001246789999999999999887754 445555555556899999999999999999999999
Q ss_pred CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEE
Q 007012 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 585 (621)
Q Consensus 508 ~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~ 585 (621)
+.++.|.|.+. ..++.+.|.|.|+|+||+++ +++|++|++...... ..|+||||+|||++++.|||+|++.
T Consensus 795 ~~g~~I~I~~~-~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~~------~~G~GLGL~Ivk~ive~hGG~I~v~ 867 (895)
T PRK10490 795 GAQAEIGIDAH-VEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKESA------IPGVGLGLAICRAIVEVHGGTIWAE 867 (895)
T ss_pred CCCCeEEEEEE-EeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCCC------CCCccHHHHHHHHHHHHcCCEEEEE
Confidence 99889999985 45678999999999999998 999999997643211 1299999999999999999999999
Q ss_pred eCCCccCCCCCCeeEEEEEecCCCC
Q 007012 586 SPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 586 S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+.+ + +||+|+|+||....
T Consensus 868 s~~------~-~Gt~f~i~LPl~~~ 885 (895)
T PRK10490 868 NRP------E-GGACFRVTLPLETP 885 (895)
T ss_pred ECC------C-CeEEEEEEeECCCC
Confidence 987 6 49999999998653
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.97 E-value=3.8e-29 Score=295.64 Aligned_cols=211 Identities=19% Similarity=0.292 Sum_probs=179.0
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~ 388 (621)
++++++++|||||||++|.++++++..........+++++.|..+++++.++++++.+.
T Consensus 451 ~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~--------------------- 509 (828)
T PRK13837 451 GTLASGIAHNFNNILGAILGYAEMALNKLARHSRAARYIDEIISAGARARLIIDQILAF--------------------- 509 (828)
T ss_pred HHHHHHhhHHhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 67999999999999999999999998777666677788999999999999999998442
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 007012 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (621)
Q Consensus 389 s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~ 468 (621)
++......+++++.+++++++..+....
T Consensus 510 ---------------------------------------------------sr~~~~~~~~~~l~~ll~~~~~~~~~~~- 537 (828)
T PRK13837 510 ---------------------------------------------------GRKGERNTKPFDLSELVTEIAPLLRVSL- 537 (828)
T ss_pred ---------------------------------------------------hCCCCCCCcEEcHHHHHHHHHHHHHHHc-
Confidence 1112233568999999999999887544
Q ss_pred hcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe--------------cCCeEEEEEEeCCC
Q 007012 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------PAGDALVVIDDDGP 534 (621)
Q Consensus 469 ~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~--------------~~~~v~I~V~D~G~ 534 (621)
.+++.+.+..+..+..+.+|+..|.+|+.||++||+||++.++.|.|.+... +++.+.|.|.|+|+
T Consensus 538 ~~~i~l~~~~~~~~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~ 617 (828)
T PRK13837 538 PPGVELDFDQDQEPAVVEGNPAELQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGA 617 (828)
T ss_pred cCCcEEEEEeCCCCceEEECHHHHHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCC
Confidence 3677887777666678999999999999999999999999889999988543 25678999999999
Q ss_pred CCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 535 DMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 535 GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
||+++ +++|+|||+... .|+||||+|||++++.|||+|++.|.+ +. |++|+|+||...
T Consensus 618 GI~~e~~~~iFe~F~~~~~----------~G~GLGL~i~~~iv~~~gG~i~v~s~~------g~-Gt~f~i~LP~~~ 677 (828)
T PRK13837 618 GIDEAVLPHIFEPFFTTRA----------GGTGLGLATVHGIVSAHAGYIDVQSTV------GR-GTRFDVYLPPSS 677 (828)
T ss_pred CCCHHHHHHhhCCcccCCC----------CCCcchHHHHHHHHHHCCCEEEEEecC------CC-eEEEEEEEeCCC
Confidence 99998 999999996531 199999999999999999999999987 64 999999999865
No 6
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.97 E-value=1.1e-29 Score=299.03 Aligned_cols=234 Identities=18% Similarity=0.182 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 007012 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (621)
Q Consensus 294 l~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~ 373 (621)
+.+....+++....+.+|+++++|||||||++|.+++++|.... .++..++.++.|..++++|.++++++.+...+..
T Consensus 436 L~~a~~~le~~~~~k~~fla~iSHELRtPL~aI~g~~elL~~~~-~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~- 513 (894)
T PRK10618 436 LQQAQREYEKNQQARKAFLQNIGDELKQPLQSLAQLAAQLRQTS-DEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLET- 513 (894)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 34444555666677789999999999999999999999986643 3455678899999999999999998854311000
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHH
Q 007012 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (621)
Q Consensus 374 ~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~ 453 (621)
.......+++++.
T Consensus 514 -------------------------------------------------------------------~~~~l~~~~~~L~ 526 (894)
T PRK10618 514 -------------------------------------------------------------------QDWKPEQELFSLQ 526 (894)
T ss_pred -------------------------------------------------------------------CCCcccceeECHH
Confidence 0001235679999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEec-CCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEec--CCeEEEEEE
Q 007012 454 DVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAP--AGDALVVID 530 (621)
Q Consensus 454 elL~~~l~~~~~~a~~~~i~l~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~--~~~v~I~V~ 530 (621)
+++++++..+.+.+..+++.+.+... +.+..+.+|+.+|+||+.|||.||+||++. |.|.|.+.... ++.+.|.|.
T Consensus 527 ~ll~~vl~~~~~~a~~k~i~l~~~~~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~-G~I~I~v~~~~~~~~~l~I~V~ 605 (894)
T PRK10618 527 DLIDEVLPEVLPAIKRKGLQLLIHNHLKAEQLRIGDRDALRKILLLLLNYAITTTAY-GKITLEVDQDESSPDRLTIRIL 605 (894)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCCCcEEEecHHHHHHHHHHHHHHHHHhCCC-CeEEEEEEEccCCCcEEEEEEE
Confidence 99999999999999999999988763 445679999999999999999999999985 67888774322 256999999
Q ss_pred eCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 531 DDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 531 D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
|+|+||+++ +++|+||++..... +. ..|+||||+|||++++.|||+|++.|.+ |. ||+|+|+||..
T Consensus 606 DtG~GI~~e~l~~IFePF~t~~~~~-~~----~~GtGLGLaI~k~Lve~~GG~I~v~S~~------g~-GT~F~I~LPl~ 673 (894)
T PRK10618 606 DTGAGVSIKELDNLHFPFLNQTQGD-RY----GKASGLTFFLCNQLCRKLGGHLTIKSRE------GL-GTRYSIHLKML 673 (894)
T ss_pred ECCCCCCHHHHHHhcCccccCCCCC-CC----CCCcChhHHHHHHHHHHcCCEEEEEECC------CC-cEEEEEEEEcc
Confidence 999999998 99999999753221 11 2399999999999999999999999988 75 99999999986
Q ss_pred C
Q 007012 609 A 609 (621)
Q Consensus 609 ~ 609 (621)
.
T Consensus 674 ~ 674 (894)
T PRK10618 674 A 674 (894)
T ss_pred C
Confidence 4
No 7
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.97 E-value=4.8e-28 Score=280.56 Aligned_cols=345 Identities=18% Similarity=0.211 Sum_probs=235.9
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceeEEEeecCCCCCCC-eee---ec-----ccccCC--
Q 007012 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNATD-IVV---LV-----GNFNMP-- 179 (621)
Q Consensus 112 ~~s~~f~~l~~~ql~~~~~~~~~~a~~~-~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~-~~~---l~-----~~~~~~-- 179 (621)
....+-.++++..++.+++.+ ++..+ +|+.+.+ ...+.+++.|.....+. ... +. ..+-+.
T Consensus 315 ~~~~~~~~l~~~~~~~l~~~l--~~~~g~l~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (679)
T TIGR02916 315 SEARSSDDLGERVIRALAQLV--ESPGGVLWLKSGN-----DGLYRPAARWNQPLAQAFEPSDSAFCQFLQESGWIINLE 387 (679)
T ss_pred hCCCCCccHHHHHHHHHHHHh--CCCCceEEEEcCC-----CCEEeeehhcCCCCcccCCCCCCHHHHHHHhCCCcccch
Confidence 444566788889999999999 55555 8988621 12455555553321100 000 00 000000
Q ss_pred cchhhhh-h--hhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 007012 180 AGLRAAE-A--ALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (621)
Q Consensus 180 ~~~~~~~-~--~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 256 (621)
.....+. . ......... .+...+++||..++.++|++++..+.. . ..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~vPL~~~~~~~G~l~l~~~~~----------~---------~~---------- 437 (679)
T TIGR02916 388 EARSEPDHYSGLVLPEWLRE-IPNAWLIVPLISGEELVGFVVLARPRT----------A---------GE---------- 437 (679)
T ss_pred hhcCCcccccccccchhhhc-CCCceEEEEeccCCEEEEEEEEecCCC----------C---------CC----------
Confidence 0000000 0 000111111 234578999999999999999983110 0 11
Q ss_pred cchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHhHHHHHHHHHHHHH
Q 007012 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSW--QNNARMSNLVEQIRGPLSSIQTLSKMLS 334 (621)
Q Consensus 257 ~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~qr~~~lqq~~~--q~~~~la~lsHELRtPLtaI~~~~~lL~ 334 (621)
|+.+++..+..++++++.+....+..++++++.+ ..+++.+.++|||||||+.+..+.+...
T Consensus 438 ----------------~~~e~~~lL~~l~~q~a~~l~~~~~~~~l~~~~~~~~~~~~~a~i~HdLrn~l~~l~~~l~~~~ 501 (679)
T TIGR02916 438 ----------------FNWEVRDLLKTAGRQAASYLAQMEASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRNAE 501 (679)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4557778888999998887765555544444332 2377888999999999999988887776
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhcccccccccccccc
Q 007012 335 LHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKL 414 (621)
Q Consensus 335 ~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~ 414 (621)
+....++...++.+.+....+++.+++.++...
T Consensus 502 ~~~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~----------------------------------------------- 534 (679)
T TIGR02916 502 RHKDNPEFQDDMLETVENAVNRMKKLLAQLRSK----------------------------------------------- 534 (679)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Confidence 554444444566677777777777777666320
Q ss_pred ccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHH
Q 007012 415 QNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQ 494 (621)
Q Consensus 415 ~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~q 494 (621)
.. .....++++.++++++++.+... +..+.++. +.+..+.+|+..+.+
T Consensus 535 -----------------------~~----~~~~~~~~l~~ll~~~~~~~~~~----~~~~~l~~-~~~~~v~~d~~~l~~ 582 (679)
T TIGR02916 535 -----------------------GL----EEEKLCVDLVDLLRRAIASKRAQ----GPRPEVSI-DTDLSVRADRERLER 582 (679)
T ss_pred -----------------------cc----ccCCccccHHHHHHHHHHHhhhh----cCCceEEe-CCCceEEECHHHHHH
Confidence 00 01245689999999998876542 33444444 334789999999999
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC---CcccCCccccccccccccCCCCCCccchHHHH
Q 007012 495 ALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM---MHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571 (621)
Q Consensus 495 VL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e---~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIv 571 (621)
|+.||++||+||++.++.|.|.+.. .++.+.|.|.|+|+||+++ +++|+||++... .|+|+||++|
T Consensus 583 vl~nLl~NAik~~~~~~~I~I~~~~-~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~----------~G~GLGL~i~ 651 (679)
T TIGR02916 583 VLGHLVQNALEATPGEGRVAIRVER-ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG----------AGMGIGVYEC 651 (679)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEE-cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC----------CCcchhHHHH
Confidence 9999999999999988899999954 5578999999999999987 889999986531 2999999999
Q ss_pred HHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 572 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 572 r~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
|++++.|||+|++++.+ +. ||+|+++||
T Consensus 652 ~~iv~~~gG~i~v~s~~------g~-Gt~f~i~LP 679 (679)
T TIGR02916 652 RQYVEEIGGRIEVESTP------GQ-GTIFTLVLP 679 (679)
T ss_pred HHHHHHcCCEEEEEecC------CC-ceEEEEEeC
Confidence 99999999999999987 64 999999998
No 8
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.97 E-value=8.9e-29 Score=271.32 Aligned_cols=220 Identities=20% Similarity=0.222 Sum_probs=174.4
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~ 387 (621)
.++++++++|||||||++|.+++++|......++....+++.|..+++++..+++++.+... . .
T Consensus 204 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r--------~--------~ 267 (430)
T PRK11006 204 RRNFFANVSHELRTPLTVLQGYLEMMQDQPLEGALREKALHTMREQTQRMEGLVKQLLTLSK--------I--------E 267 (430)
T ss_pred HHHHHHHhHHHhcchHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h--------c
Confidence 45799999999999999999999998765444445566788899999999999999854311 0 0
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 007012 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (621)
Q Consensus 388 ~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a 467 (621)
. .. .....+.+++..+++.+...+....
T Consensus 268 ~---------------------------------------------------~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (430)
T PRK11006 268 A---------------------------------------------------AP-TIDLNEKVDVPMMLRVLEREAQTLS 295 (430)
T ss_pred C---------------------------------------------------CC-CcccCCccCHHHHHHHHHHHHHHHh
Confidence 0 00 0011356788888888777766554
Q ss_pred hhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCC
Q 007012 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTP 545 (621)
Q Consensus 468 ~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~ 545 (621)
.+++.+.+..+ ....+.+|+..|.+|+.||++||+||++.++.|.|.+. ..++.+.|.|.|+|+||+++ +++|+|
T Consensus 296 -~~~~~i~~~~~-~~~~i~~d~~~l~~vl~NLl~NAik~~~~~~~I~i~~~-~~~~~~~i~V~D~G~Gi~~~~~~~if~~ 372 (430)
T PRK11006 296 -QGKHTITFEVD-NSLKVFGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQ-RVPQGAEFSVEDNGPGIAPEHIPRLTER 372 (430)
T ss_pred -cCCcEEEEecC-CCceEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE-EcCCEEEEEEEEcCCCCCHHHHHHhccC
Confidence 46677777763 44578999999999999999999999998889999884 45577999999999999998 999999
Q ss_pred ccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 546 F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
||+......... +|+||||+|||++++.|||+|++.+.+ +. ||+|+++||...
T Consensus 373 f~~~~~~~~~~~----~G~GLGL~ivk~iv~~~gG~i~i~s~~------~~-Gt~f~i~lP~~~ 425 (430)
T PRK11006 373 FYRVDKARSRQT----GGSGLGLAIVKHALSHHDSRLEIESEV------GK-GTRFSFVLPERL 425 (430)
T ss_pred cccccCCCCCCC----CCCchHHHHHHHHHHHCCCEEEEEecC------CC-ceEEEEEechHh
Confidence 998654332222 399999999999999999999999987 64 999999999764
No 9
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.96 E-value=2.6e-28 Score=290.36 Aligned_cols=235 Identities=14% Similarity=0.121 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007012 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (621)
Q Consensus 293 ~l~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~ 372 (621)
.+.+..+.+++..+.+..|+++++|||||||++|.++.++|.... .++..+++++.|...+++|..+++++.+...+..
T Consensus 432 ~L~~~~~~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~~-~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~ 510 (924)
T PRK10841 432 SLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKE-LPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES 510 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455556666666788999999999999999999999986543 3345567888999999999999999855311000
Q ss_pred hhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeH
Q 007012 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (621)
Q Consensus 373 ~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L 452 (621)
. ......+++++
T Consensus 511 ~--------------------------------------------------------------------~~~l~~~~~~l 522 (924)
T PRK10841 511 E--------------------------------------------------------------------QLKIEPREFSP 522 (924)
T ss_pred C--------------------------------------------------------------------CceeeeEEecH
Confidence 0 00012467999
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecC-CceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEe
Q 007012 453 SDVLGDLFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDD 531 (621)
Q Consensus 453 ~elL~~~l~~~~~~a~~~~i~l~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D 531 (621)
.+++++++..+.+.+..+++.+.+...+ .+..+.+|+.+|+||+.|||+||+||++. |.|.|.+.. .++.+.|.|.|
T Consensus 523 ~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~-G~I~I~v~~-~~~~l~i~V~D 600 (924)
T PRK10841 523 REVINHITANYLPLVVKKRLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRV-DGDYLSFRVRD 600 (924)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCC-CcEEEEEEE-eCCEEEEEEEE
Confidence 9999999999999998899998877633 34579999999999999999999999986 568887743 56789999999
Q ss_pred CCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 532 DGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 532 ~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+|+||+++ +++|+||++......... .|+||||+||+++++.|||+|++.|.+ +. |++|+|.||...
T Consensus 601 tG~GI~~e~~~~lFepF~~~~~~~~~~~----~GtGLGL~I~k~lv~~~gG~I~v~S~~------g~-Gt~F~i~LP~~~ 669 (924)
T PRK10841 601 TGVGIPAKEVVRLFDPFFQVGTGVQRNF----QGTGLGLAICEKLINMMDGDISVDSEP------GM-GSQFTIRIPLYG 669 (924)
T ss_pred cCcCCCHHHHHHHhcccccCCCCCCCCC----CCeehhHHHHHHHHHHCCCEEEEEEcC------CC-cEEEEEEEECCc
Confidence 99999998 999999998653332222 399999999999999999999999987 75 999999999864
No 10
>PRK10364 sensor protein ZraS; Provisional
Probab=99.96 E-value=1.5e-27 Score=263.40 Aligned_cols=211 Identities=20% Similarity=0.305 Sum_probs=179.1
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~ 388 (621)
+++.++++||+||||++|.++++++......+...++.++.|..+.+++.++++++.+..
T Consensus 238 ~~~~~~laHelrtpL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~-------------------- 297 (457)
T PRK10364 238 GHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELV-------------------- 297 (457)
T ss_pred HHHHHHhhHHhccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 567889999999999999999999988766666667788888899999998888874321
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 007012 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (621)
Q Consensus 389 s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~ 468 (621)
+.......++++.++++.++..+...+.
T Consensus 298 ----------------------------------------------------~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 325 (457)
T PRK10364 298 ----------------------------------------------------KPTHLALQAVDLNDLINHSLQLVSQDAN 325 (457)
T ss_pred ----------------------------------------------------CcCCCcceEecHHHHHHHHHHHHHHHHH
Confidence 1111235678999999999999999998
Q ss_pred hcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCc
Q 007012 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPF 546 (621)
Q Consensus 469 ~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F 546 (621)
.+++.+.++.+.....+.+|+..|.+++.|||+||+||++.++.|.|.+. ..++.+.|.|.|+|+||+++ +++|++|
T Consensus 326 ~~~i~l~~~~~~~~~~~~~d~~~l~~il~NLl~NA~k~~~~~~~I~i~~~-~~~~~~~i~V~D~G~Gi~~~~~~~if~~~ 404 (457)
T PRK10364 326 SREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTAS-ESGAGVKISVTDSGKGIAADQLEAIFTPY 404 (457)
T ss_pred hcCeEEEEEcCCCCceEEECHHHHHHHHHHHHHHHHHhcCCCCeEEEEEE-EeCCeEEEEEEECCCCCCHHHHHHHhCcc
Confidence 89999998876555678899999999999999999999988889999985 45567999999999999998 9999999
Q ss_pred cccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 547 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 547 ~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
++.. . .|+||||+|||++++.|||+|++.+.+ +. ||+|+|.||...
T Consensus 405 ~~~k----~------~g~GlGL~iv~~~v~~~gG~i~i~s~~------~~-Gt~f~i~lP~~~ 450 (457)
T PRK10364 405 FTTK----A------EGTGLGLAVVHNIVEQHGGTIQVASQE------GK-GATFTLWLPVNI 450 (457)
T ss_pred ccCC----C------CCCcccHHHHHHHHHHCCCEEEEEeCC------CC-cEEEEEEecCCC
Confidence 8542 1 289999999999999999999999977 64 999999999865
No 11
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.96 E-value=3.6e-28 Score=285.64 Aligned_cols=227 Identities=22% Similarity=0.219 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Q 007012 303 QSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEET 382 (621)
Q Consensus 303 q~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~ 382 (621)
+..+.+.+|+++++|||||||++|.++++++.... .++..+++++.|...++++..+++++.+...+...
T Consensus 278 ~a~~~~~~~~a~isHelrtPL~~I~g~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~--------- 347 (779)
T PRK11091 278 KASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQRKYLKTIHVSAITLGNIFNDIIDMDKMERR--------- 347 (779)
T ss_pred HHHHHHHHHHHHhhHhhcCcHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCC---------
Confidence 34445689999999999999999999999987543 34456778899999999999999888553210000
Q ss_pred HhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHH
Q 007012 383 LKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462 (621)
Q Consensus 383 l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~ 462 (621)
.+ .....++++.++++.+...
T Consensus 348 -----------------------------------------------------~~------~~~~~~~~l~~~i~~~~~~ 368 (779)
T PRK11091 348 -----------------------------------------------------KL------QLDNQPIDFTDFLADLENL 368 (779)
T ss_pred -----------------------------------------------------Cc------EEEeeccCHHHHHHHHHHH
Confidence 00 0124679999999999999
Q ss_pred HHHHHhhcCCeEEEEecC-CceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--
Q 007012 463 VRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM-- 539 (621)
Q Consensus 463 ~~~~a~~~~i~l~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e-- 539 (621)
+...+..+++.+.+.... .+..+.+|+..|.||+.|||+||+||++. |.|.|.+....++.+.|.|.|+|+||+++
T Consensus 369 ~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~-g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~ 447 (779)
T PRK11091 369 SGLQAEQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISNAVKFTQQ-GGVTVRVRYEEGDMLTFEVEDSGIGIPEDEL 447 (779)
T ss_pred HHHHHHhcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHHHhCCC-CcEEEEEEEccCCEEEEEEEecCCCCCHHHH
Confidence 999999999999888743 34579999999999999999999999975 56888775444677999999999999998
Q ss_pred CcccCCccccc-cccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 540 MHSLTPFGSEL-FSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 540 ~~iFe~F~~~~-~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+++|+|||+.. ....... .|+||||+|||++++.|||+|++.|.+ |. ||+|+++||....
T Consensus 448 ~~iF~~f~~~~~~~~~~~~----~GtGLGL~i~~~iv~~~gG~i~v~s~~------g~-Gt~f~i~lP~~~~ 508 (779)
T PRK11091 448 DKIFAMYYQVKDSHGGKPA----TGTGIGLAVSKRLAQAMGGDITVTSEE------GK-GSCFTLTIHAPAV 508 (779)
T ss_pred HHHHHHhhcccCCCCCCCC----CCcchHHHHHHHHHHHcCCEEEEEecC------CC-eEEEEEEEecccc
Confidence 99999999873 2222212 399999999999999999999999987 75 9999999998654
No 12
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.96 E-value=1.7e-27 Score=285.79 Aligned_cols=227 Identities=19% Similarity=0.206 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Q 007012 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (621)
Q Consensus 300 ~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~ 379 (621)
..++....+.+|+++++|||||||++|.+++++|... ..++..+++++.|...+++|..+++++.++..+...
T Consensus 456 ~~~~~~~~~~~~~~~~sHelrtPL~~i~~~~~ll~~~-~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~~------ 528 (968)
T TIGR02956 456 EAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDT-GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAG------ 528 (968)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 3444555568999999999999999999999998754 334556788999999999999999998553220000
Q ss_pred HHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHH
Q 007012 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDL 459 (621)
Q Consensus 380 ~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~ 459 (621)
+ ......++++.++++++
T Consensus 529 -------------------------------------------------------------~-~~~~~~~~~l~~ll~~~ 546 (968)
T TIGR02956 529 -------------------------------------------------------------H-LSISPRPFDLNALLDDV 546 (968)
T ss_pred -------------------------------------------------------------C-CeeeecccCHHHHHHHH
Confidence 0 00135689999999999
Q ss_pred HHHHHHHHhhcCCeEEEEec-CCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCe-EEEEEEeCCCCCC
Q 007012 460 FEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGD-ALVVIDDDGPDMH 537 (621)
Q Consensus 460 l~~~~~~a~~~~i~l~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~-v~I~V~D~G~GI~ 537 (621)
+..+...+..+++.+.+..+ ..+..+.+|+..|+|||.|||+||+||++. |.|.|.+.. .++. +.|.|.|+|+||+
T Consensus 547 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~-g~i~i~~~~-~~~~~~~i~V~D~G~Gi~ 624 (968)
T TIGR02956 547 HHLMVSRAQLKGIQLRLNIPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDR-GSVVLRVSL-NDDSSLLFEVEDTGCGIA 624 (968)
T ss_pred HHHHHHHHHHcCcEEEEEeCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCC-CeEEEEEEE-cCCCeEEEEEEeCCCCCC
Confidence 99999999999999999874 445678999999999999999999999986 668888854 3455 9999999999999
Q ss_pred CC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 538 YM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 538 ~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
++ .++|+||++.... .. .+|+||||+|||++++.|||+|.+.+.+ +. ||+|+++||....
T Consensus 625 ~~~~~~if~~f~~~~~~--~~----~~g~GLGL~i~~~l~~~~gG~i~~~s~~------~~-Gt~f~~~lp~~~~ 686 (968)
T TIGR02956 625 EEEQATLFDAFTQADGR--RR----SGGTGLGLAISQRLVEAMDGELGVESEL------GV-GSCFWFTLPLTRG 686 (968)
T ss_pred HHHHHHHHhhhhccCCC--CC----CCCccHHHHHHHHHHHHcCCEEEEEecC------CC-cEEEEEEEEcCCC
Confidence 98 9999999987621 11 1399999999999999999999999987 64 9999999998653
No 13
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.96 E-value=5e-27 Score=258.34 Aligned_cols=146 Identities=20% Similarity=0.293 Sum_probs=126.1
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCC----eEEEEEEEecC
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG----KVEIVSAAAPA 522 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg----~I~I~~~~~~~ 522 (621)
..++++.+++++++..+...+..+++.+.+..+.....+.+|+..|+|||.||+.||+||++.++ .|.|.+. ..+
T Consensus 343 ~~~~dl~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~-~~~ 421 (494)
T TIGR02938 343 VVPVNLNQILRDVITLSTPRLLAAGIVVDWQPAATLPAILGRELQLRSLFKALVDNAIEAMNIKGWKRRELSITTA-LNG 421 (494)
T ss_pred cccccHHHHHHHHHHHhHHHHHhCCCEEEEecCCCCCeeecCHHHHHHHHHHHHHHHHHHhhccCCCcceEEEEEE-ecC
Confidence 35799999999999999888888899998877555567899999999999999999999987763 5777763 456
Q ss_pred CeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeE
Q 007012 523 GDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTR 600 (621)
Q Consensus 523 ~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~ 600 (621)
+.+.|+|.|+|+|||++ .++|++|++..... . .|+||||+|||.+++.|||+|++.+.+ +. ||+
T Consensus 422 ~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---~----~G~GlGL~i~~~iv~~~gG~i~~~s~~------~~-G~~ 487 (494)
T TIGR02938 422 DLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---R----KHIGMGLSVAQEIVADHGGIIDLDDDY------SE-GCR 487 (494)
T ss_pred CEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---C----CCCcccHHHHHHHHHHcCCEEEEEECC------CC-CEE
Confidence 78999999999999998 99999999764322 1 299999999999999999999999988 75 999
Q ss_pred EEEEecC
Q 007012 601 VELWLPS 607 (621)
Q Consensus 601 f~l~LP~ 607 (621)
|+|+||.
T Consensus 488 f~i~lp~ 494 (494)
T TIGR02938 488 IIVEFRV 494 (494)
T ss_pred EEEEecC
Confidence 9999995
No 14
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-27 Score=240.10 Aligned_cols=210 Identities=21% Similarity=0.244 Sum_probs=170.5
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~ 387 (621)
...+..+++|||||||++|+|.+++|.+.+.. +..+++.+-|..++|||..+++.+.-
T Consensus 132 ~~~L~r~LAHEIKNPL~GiRGAAQLLe~~lpd-~~~~~lt~lIieE~DRl~~LVDRme~--------------------- 189 (363)
T COG3852 132 VKGLVRGLAHEIKNPLGGIRGAAQLLERALPD-EALRELTQLIIEEADRLRNLVDRLEV--------------------- 189 (363)
T ss_pred HHHHHHHHHHHhcCcccchhhHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 37889999999999999999999999887643 34789999999999999999988821
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 007012 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (621)
Q Consensus 388 ~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a 467 (621)
++.-..+...+++++++++.+.......+
T Consensus 190 ---------------------------------------------------~~~~rp~~r~~~NIH~VLerV~~lv~~e~ 218 (363)
T COG3852 190 ---------------------------------------------------LGPQRPGDRVPVNIHEVLERVRALVEAEF 218 (363)
T ss_pred ---------------------------------------------------cCCCCCcccccchHHHHHHHHHHHHhccc
Confidence 11111233558899999999998888665
Q ss_pred hhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcC----CCCeEEEEEEE-----ecCC----eEEEEEEeCCC
Q 007012 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ----VGGKVEIVSAA-----APAG----DALVVIDDDGP 534 (621)
Q Consensus 468 ~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~----~gg~I~I~~~~-----~~~~----~v~I~V~D~G~ 534 (621)
. .++.+.-+.++..+.+++|++.|.|++.||+.||+.... .+|.|.++... ..+. .+.|.|.|||+
T Consensus 219 ~-~~i~l~rdYDPSLP~v~~d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGP 297 (363)
T COG3852 219 A-DNVRLIRDYDPSLPEVLGDRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGP 297 (363)
T ss_pred C-CceEEeecCCCCCccccCCHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCC
Confidence 4 566666666666778999999999999999999999754 34677776621 0111 25688999999
Q ss_pred CCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 535 DMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 535 GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
|||++ +++|.||.++. .+|+||||+|+++++.+|||.|+++|.+ +.|+|+|.+|...
T Consensus 298 GVP~~L~~~lF~P~Vs~r----------~~GsGLGLala~~li~qH~G~Ie~~S~P--------g~T~FrvllP~~~ 356 (363)
T COG3852 298 GVPPDLQDHLFYPMVSGR----------EGGTGLGLALAQNLIDQHGGKIEFDSWP--------GRTVFRVLLPIRK 356 (363)
T ss_pred CCChHHhhhccccccccC----------CCCccccHHHHHHHHHhcCCEEEEeccC--------CceEEEEEeeccc
Confidence 99999 99999998553 1399999999999999999999999987 4799999999987
No 15
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.96 E-value=4.2e-27 Score=280.86 Aligned_cols=225 Identities=17% Similarity=0.205 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 007012 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (621)
Q Consensus 299 ~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~ 378 (621)
+..++....+.+++++++|||||||++|.+++++|.... .++..+++++.+...+++|..+++++.+...+...
T Consensus 389 ~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~~----- 462 (921)
T PRK15347 389 QRAEQANKRKSEHLTTISHEIRTPLNGVLGALELLQNTP-LTAEQMDLADTARQCTLSLLAIINNLLDFSRIESG----- 462 (921)
T ss_pred HHHHHHHHHHHHHHHHhHHHhchhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 334445555689999999999999999999999987643 34556788999999999999999998553210000
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHH
Q 007012 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (621)
Q Consensus 379 ~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~ 458 (621)
.+ ....+++++.+++++
T Consensus 463 ---------------------------------------------------------~~------~~~~~~~~l~~~~~~ 479 (921)
T PRK15347 463 ---------------------------------------------------------QM------TLSLEETALLPLLDQ 479 (921)
T ss_pred ---------------------------------------------------------Cc------cceecccCHHHHHHH
Confidence 00 012467899999999
Q ss_pred HHHHHHHHHhhcCCeEEEEecC-CceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCC
Q 007012 459 LFEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (621)
Q Consensus 459 ~l~~~~~~a~~~~i~l~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~ 537 (621)
++..+...+..+++.+.+..++ .+..+.+|+.+|+||+.|||+||+||++. |.|.|.+. ..++.+.|.|.|+|+||+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~-g~I~i~~~-~~~~~~~i~V~D~G~Gi~ 557 (921)
T PRK15347 480 AMLTIQGPAQSKSLTLRTFVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTET-GGIRLRVK-RHEQQLCFTVEDTGCGID 557 (921)
T ss_pred HHHHHHHHHHHCCcEEEEEECCCCCceEEECHHHHHHHHHHHHHHHhhcCCC-CCEEEEEE-EcCCEEEEEEEEcCCCCC
Confidence 9999999998899999887643 35679999999999999999999999986 56888884 456789999999999999
Q ss_pred CC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 538 YM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 538 ~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
++ +++|++|++.... ..|+||||+||+++++.|||+|++.|.+ |. ||+|++.||...
T Consensus 558 ~~~~~~if~~f~~~~~~--------~~g~GLGL~i~~~~~~~~gG~i~i~s~~------~~-Gt~f~i~lp~~~ 616 (921)
T PRK15347 558 IQQQQQIFTPFYQADTH--------SQGTGLGLTIASSLAKMMGGELTLFSTP------GV-GSCFSLVLPLNE 616 (921)
T ss_pred HHHHHHHhcCcccCCCC--------CCCCchHHHHHHHHHHHcCCEEEEEecC------CC-ceEEEEEEECCC
Confidence 98 9999999976421 1299999999999999999999999987 75 999999999864
No 16
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.96 E-value=8.2e-27 Score=252.99 Aligned_cols=212 Identities=20% Similarity=0.323 Sum_probs=174.2
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~~--~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i 386 (621)
+++.++++|||++||++|++|++.-..-+.. .+...+.++.|..-.+||..+..+|..
T Consensus 385 GQmSA~iaHElNQPLaaiRt~adna~~lLergr~e~a~~Nl~~I~~LteRma~It~~Lk~-------------------- 444 (603)
T COG4191 385 GQMSAGIAHELNQPLAAIRTYADNARLLLERGRTEEARENLERISALTERMAAITAHLKS-------------------- 444 (603)
T ss_pred HHHHHHHHHHhcCcHHHHHhHHHHHHHHHHcCChHHHHhHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 7778899999999999999999875544333 344555666676667777777766632
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 007012 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (621)
Q Consensus 387 ~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~ 466 (621)
|++.......++.+.++|+.++..+...
T Consensus 445 ----------------------------------------------------FArk~~~a~~~v~l~~ai~~Al~ll~~R 472 (603)
T COG4191 445 ----------------------------------------------------FARKSRDAAGPVSLREAIEGALELLRGR 472 (603)
T ss_pred ----------------------------------------------------HhccCccccCCccHHHHHHHHHHHHHHh
Confidence 2333333467899999999999999999
Q ss_pred HhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--Ccc
Q 007012 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHS 542 (621)
Q Consensus 467 a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~--~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~i 542 (621)
.+..+..+.+..++.+++|.+++.+|+|||.|||.||++... ....|+|.+. .+++.+.|.|.||||||+++ .++
T Consensus 473 ~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~-~~~~~v~l~VrDnGpGi~~e~~~~l 551 (603)
T COG4191 473 LRAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMAGQEDRRLSIRAQ-REGGQVVLTVRDNGPGIAPEALPHL 551 (603)
T ss_pred hhccCceeeccCCCCCceeecchhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-ecCCeEEEEEccCCCCCCHHHHHhh
Confidence 988888888888777899999999999999999999999864 4468999994 56788999999999999999 999
Q ss_pred cCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 543 Fe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
|+|||+ +|..++ |.||||+|+++|++.+||+|++.+.+ + +|+.|+|.||..
T Consensus 552 FePF~T----tK~~~~----GLGLGLaIS~~i~~d~GGsL~v~n~~------~-~Ga~F~i~L~~a 602 (603)
T COG4191 552 FEPFFT----TKPVGK----GLGLGLAISQNIARDLGGSLEVANHP------E-GGASFTIELRRA 602 (603)
T ss_pred cCCccc----cCcccC----CcchhHHHHHHHHHHhCCeEEeecCC------C-CceEEEEEeecC
Confidence 999994 443333 99999999999999999999999865 4 599999999964
No 17
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.96 E-value=6.7e-27 Score=278.90 Aligned_cols=226 Identities=17% Similarity=0.191 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Q 007012 303 QSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEET 382 (621)
Q Consensus 303 q~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~ 382 (621)
+..+.+.+|+++++|||||||++|.++++++.+.. .++..+++++.|.+++++|.++++++.+...+...
T Consensus 288 ~~~~~~~~~l~~isHelrtPL~~i~~~~~~l~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~--------- 357 (919)
T PRK11107 288 EAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTP-LTPTQRDYLQTIERSANNLLAIINDILDFSKLEAG--------- 357 (919)
T ss_pred HHHHHHHHHHHHhhHhhcccHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 34444578999999999999999999999887643 34556788999999999999999998553110000
Q ss_pred HhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHH
Q 007012 383 LKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEA 462 (621)
Q Consensus 383 l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~ 462 (621)
.+ .....++++.+++++++..
T Consensus 358 -----------------------------------------------------~~------~~~~~~~~l~~~l~~~~~~ 378 (919)
T PRK11107 358 -----------------------------------------------------KL------VLENIPFSLRETLDEVVTL 378 (919)
T ss_pred -----------------------------------------------------Cc------EEEEeecCHHHHHHHHHHH
Confidence 00 0124579999999999999
Q ss_pred HHHHHhhcCCeEEEEecC-CceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEE--EecCC--eEEEEEEeCCCCCC
Q 007012 463 VRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA--AAPAG--DALVVIDDDGPDMH 537 (621)
Q Consensus 463 ~~~~a~~~~i~l~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~--~~~~~--~v~I~V~D~G~GI~ 537 (621)
+...+..+++.+.+...+ .+..+.+|+.+|.||+.|||+||+||++.|+ |.|.+. ...++ .+.|.|.|+|+||+
T Consensus 379 ~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~-v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~ 457 (919)
T PRK11107 379 LAHSAHEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN-IDILVELRALSNTKVQLEVQIRDTGIGIS 457 (919)
T ss_pred HHHHHHHcCCEEEEEeCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEEEecCCCeeEEEEEEEEeCCCcC
Confidence 999999999999888743 3456899999999999999999999998754 544442 22222 58899999999999
Q ss_pred CC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 538 YM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 538 ~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
++ +++|++|++.+.+..... +|+||||+|||++++.|||+|++.|.+ +. ||+|++.||...
T Consensus 458 ~~~~~~if~~f~~~~~~~~~~~----~g~GLGL~i~~~i~~~~gG~i~v~s~~------~~-Gt~f~i~lp~~~ 520 (919)
T PRK11107 458 ERQQSQLFQAFRQADASISRRH----GGTGLGLVITQKLVNEMGGDISFHSQP------NR-GSTFWFHLPLDL 520 (919)
T ss_pred HHHHHHHhhhhccCCCCCCCCC----CCcchhHHHHHHHHHHhCCEEEEEecC------CC-CEEEEEEEEecc
Confidence 98 999999998765544333 399999999999999999999999987 64 999999999864
No 18
>PRK10604 sensor protein RstB; Provisional
Probab=99.96 E-value=8.6e-27 Score=256.20 Aligned_cols=228 Identities=15% Similarity=0.186 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007012 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (621)
Q Consensus 293 ~l~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~ 372 (621)
.+.+....+++....+++++++++|||||||+.|++..+++.. ... . ..+.+.+..+++.++++++.....
T Consensus 197 ~fn~m~~~l~~~~~~~~~l~~~vsHeLrtPL~~i~~~l~~l~~-~~~--~---~~~~i~~~~~~l~~li~~ll~~~r--- 267 (433)
T PRK10604 197 AFNQMADNINALIASKKQLIDGIAHELRTPLVRLRYRLEMSDN-LSA--A---ESQALNRDIGQLEALIEELLTYAR--- 267 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHhcC-CCc--H---HHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 3444455556666667899999999999999999998888752 111 1 123366777888888887744211
Q ss_pred hhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeH
Q 007012 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (621)
Q Consensus 373 ~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L 452 (621)
+ .. .......+++++
T Consensus 268 -----l--------~~----------------------------------------------------~~~~~~~~~~~l 282 (433)
T PRK10604 268 -----L--------DR----------------------------------------------------PQNELHLSEPDL 282 (433)
T ss_pred -----c--------cC----------------------------------------------------CCcccCCCCCCH
Confidence 0 00 000112467899
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeC
Q 007012 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (621)
Q Consensus 453 ~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~ 532 (621)
.+++++++..+......+++. ++.......+.+|+..+.+|+.|||+||+||+. +.|.|.+. ..++.+.|.|.|+
T Consensus 283 ~~~l~~~i~~~~~~~~~~~i~--~~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~--~~I~I~~~-~~~~~~~I~V~D~ 357 (433)
T PRK10604 283 PAWLSTHLADIQAVTPEKTVR--LDTPHQGDYGALDMRLMERVLDNLLNNALRYAH--SRVRVSLL-LDGNQACLIVEDD 357 (433)
T ss_pred HHHHHHHHHHHHHHhhcCcEE--EEecCCCceEecCHHHHHHHHHHHHHHHHHhCC--CeEEEEEE-EECCEEEEEEEEc
Confidence 999999999998776554444 444444556788999999999999999999984 67888874 4567799999999
Q ss_pred CCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 533 GPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 533 G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
|+||+++ +++|+|||+.+.+..... +|+||||+|||++++.|||+|.+.+.+ + +|++|++.||....
T Consensus 358 G~Gi~~e~~~~if~~f~r~~~~~~~~~----~g~GLGL~ivk~i~~~~gG~i~v~s~~------~-~G~~f~i~lP~~~~ 426 (433)
T PRK10604 358 GPGIPPEERERVFEPFVRLDPSRDRAT----GGCGLGLAIVHSIALAMGGSVNCDESE------L-GGARFSFSWPVWHN 426 (433)
T ss_pred CCCCCHHHHhhcCCCCccCCCCCCCCC----CCccchHHHHHHHHHHCCCEEEEEecC------C-CeeEEEEEEeCCCC
Confidence 9999998 999999998764443322 389999999999999999999999977 5 49999999998764
No 19
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.95 E-value=1.1e-26 Score=277.29 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Q 007012 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (621)
Q Consensus 300 ~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~ 379 (621)
..++....+..|+++++|||||||++|.+++++|.... .++..+++++.|...++++.++++++.+... . .
T Consensus 436 ~~~~~~~~~~~~l~~isHelrtPL~~i~~~~~ll~~~~-~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~---~--~--- 506 (914)
T PRK11466 436 EAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNP-ALNAQRDDLRAITDSGESLLTILNDILDYSA---I--E--- 506 (914)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H--h---
Confidence 34445555689999999999999999999999987653 3445677899999999999999999855311 0 0
Q ss_pred HHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHH
Q 007012 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDL 459 (621)
Q Consensus 380 ~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~ 459 (621)
. ... .+ ....+++++.++++.+
T Consensus 507 --------~-------------------------------------~~~-------~~------~~~~~~~~l~~ll~~~ 528 (914)
T PRK11466 507 --------A-------------------------------------GGK-------NV------SVSDEPFEPRPLLEST 528 (914)
T ss_pred --------C-------------------------------------CCC-------cc------eecccccCHHHHHHHH
Confidence 0 000 00 0124679999999999
Q ss_pred HHHHHHHHhhcCCeEEEEecC-CceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCC
Q 007012 460 FEAVRPLAHMQQRQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538 (621)
Q Consensus 460 l~~~~~~a~~~~i~l~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~ 538 (621)
+..+...+..+++.+.++.++ .+..+.+|+..|+||+.|||.||+||++. |.|.|.+. ..++.+.|.|.|+|+||++
T Consensus 529 ~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~-g~I~i~~~-~~~~~~~i~V~D~G~Gi~~ 606 (914)
T PRK11466 529 LQLMSGRVKGRPIRLATDIADDLPTALMGDPRRIRQVITNLLSNALRFTDE-GSIVLRSR-TDGEQWLVEVEDSGCGIDP 606 (914)
T ss_pred HHHHHHHHHhCCcEEEEEeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCC-CeEEEEEE-EcCCEEEEEEEECCCCCCH
Confidence 999999999899999888743 34579999999999999999999999975 67888884 4557899999999999999
Q ss_pred C--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 539 M--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 539 e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+ +++|+||++... + .+|+||||+|||++++.|||+|++.|.+ +. ||+|++.||...
T Consensus 607 ~~~~~if~~f~~~~~--~------~~g~GLGL~i~~~l~~~~gG~i~v~s~~------~~-Gt~f~i~lP~~~ 664 (914)
T PRK11466 607 AKLAEIFQPFVQVSG--K------RGGTGLGLTISSRLAQAMGGELSATSTP------EV-GSCFCLRLPLRV 664 (914)
T ss_pred HHHHHHhchhhcCCC--C------CCCCcccHHHHHHHHHHcCCEEEEEecC------CC-CeEEEEEEEccc
Confidence 8 999999997531 1 1299999999999999999999999987 64 999999999764
No 20
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.95 E-value=2.2e-26 Score=245.60 Aligned_cols=222 Identities=18% Similarity=0.239 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 007012 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (621)
Q Consensus 299 ~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~ 378 (621)
..+++..+++++++++++|||||||++|+++.+++..... .....+....+++.+.++++..... .
T Consensus 128 ~~l~~~~~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~~~------~~~~~~~~~~~~l~~~i~~ll~~~r---~----- 193 (356)
T PRK10755 128 SRLTSTLDQERLFTADVAHELRTPLAGIRLHLELLEKQHH------IDVAPLIARLDQMMHTVEQLLQLAR---A----- 193 (356)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcChHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHHHHHHH---c-----
Confidence 3344445556789999999999999999999988754321 1123344555666666665533211 0
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeH-HHHHH
Q 007012 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV-SDVLG 457 (621)
Q Consensus 379 ~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L-~elL~ 457 (621)
. . .. .......+++ .+++.
T Consensus 194 ~--------~-------------------------------------------------~~---~~~~~~~~~l~~~~i~ 213 (356)
T PRK10755 194 G--------Q-------------------------------------------------SF---SSGHYQTVKLLEDVIL 213 (356)
T ss_pred c--------c-------------------------------------------------cc---ccccchhhhHHHHHHH
Confidence 0 0 00 0012345777 89999
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCC
Q 007012 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (621)
Q Consensus 458 ~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~ 537 (621)
.++..+...+..+++.+.+...+....+.+|+..+.+|+.||++||+||++.++.|.|.+. ..++.+.|.|.|+|+||+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~l~~il~nLi~NA~k~~~~~~~I~I~~~-~~~~~~~i~V~D~G~Gi~ 292 (356)
T PRK10755 214 PSQDELSEMLEQRQQTLLLPESAADITVQGDATLLRLLLRNLVENAHRYSPEGSTITIKLS-QEDGGAVLAVEDEGPGID 292 (356)
T ss_pred HHHHHHHHHHHHhCCeEEeccCCCceEEEECHHHHHHHHHHHHHHHHhhCCCCCcEEEEEE-EcCCEEEEEEEECCCCCC
Confidence 9888888888888888877544566789999999999999999999999998889999884 466789999999999999
Q ss_pred CC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 538 YM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 538 ~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
++ +++|++|++... . .+|+||||+||+++++.|||.|+++|.+ +.+||+|++.||...
T Consensus 293 ~~~~~~if~~f~~~~~-~-------~~g~GlGL~i~~~i~~~~gg~i~i~s~~------~~~Gt~~~i~~p~~~ 352 (356)
T PRK10755 293 ESKCGELSKAFVRMDS-R-------YGGIGLGLSIVSRITQLHHGQFFLQNRQ------ERSGTRAWVWLPKAQ 352 (356)
T ss_pred HHHHHHhCCCeEeCCC-C-------CCCcCHHHHHHHHHHHHCCCEEEEEECC------CCCeEEEEEEecCCC
Confidence 98 899999996531 1 1299999999999999999999999987 524999999999754
No 21
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.95 E-value=5.5e-26 Score=253.38 Aligned_cols=220 Identities=16% Similarity=0.144 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH
Q 007012 302 QQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEE 381 (621)
Q Consensus 302 qq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e 381 (621)
++...+.++++++++|||||||++|+++.+.|...... ...+....+..+.+++.++++++..... . .
T Consensus 260 ~~~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~~~--~~~~~~~~~~~~i~ri~~~i~~ll~~~~---~--~----- 327 (485)
T PRK10815 260 RERYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGKQM--SVEQAEPIMLEQISRISQQIGYYLHRAS---M--R----- 327 (485)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH---h--h-----
Confidence 34444557899999999999999999999988654322 1223334455666666666655522110 0 0
Q ss_pred HHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHH
Q 007012 382 TLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFE 461 (621)
Q Consensus 382 ~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~ 461 (621)
+.......+.+++.+++++++.
T Consensus 328 ----------------------------------------------------------~~~~~~~~~~~~l~~ll~~~~~ 349 (485)
T PRK10815 328 ----------------------------------------------------------SEHNLLSRELHSVAPLLDNLTS 349 (485)
T ss_pred ----------------------------------------------------------cCCcccccceecHHHHHHHHHH
Confidence 0000012457899999999999
Q ss_pred HHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--
Q 007012 462 AVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM-- 539 (621)
Q Consensus 462 ~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e-- 539 (621)
.+...+..+++.+.++.+ ....+.+|+..|.+|+.|||+||++|++. .|.|.+. ..++.+.|.|.|+|+||+++
T Consensus 350 ~l~~~~~~~~i~i~~~~~-~~~~v~~d~~~l~~vl~NLi~NAik~~~~--~i~I~~~-~~~~~v~I~V~D~G~GI~~e~~ 425 (485)
T PRK10815 350 ALNKVYQRKGVNITLDIS-PEITFVGEKNDFMEVMGNVLDNACKYCLE--FVEISAR-QTDEHLHIVVEDDGPGIPESKR 425 (485)
T ss_pred HHHHHHHHCCcEEEEecC-CCcEEEeCHHHHHHHHHHHHHHHHHhcCC--cEEEEEE-EeCCEEEEEEEECCCCcCHHHH
Confidence 999988888988888763 34567899999999999999999999975 3666663 34578999999999999998
Q ss_pred CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 540 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 540 ~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+++|+||++..... .|+||||+||+++++.|||+|.+.+.+ + +||+|+|.||....
T Consensus 426 ~~iF~~f~~~~~~~--------~G~GLGL~Ivk~iv~~~gG~i~v~s~~------~-~Gt~f~i~lp~~~~ 481 (485)
T PRK10815 426 ELIFDRGQRADTLR--------PGQGLGLSVAREITEQYEGKISAGDSP------L-GGARMEVIFGRQHS 481 (485)
T ss_pred HHHhCCcccCCCCC--------CCcchhHHHHHHHHHHcCCEEEEEECC------C-CEEEEEEEEcCCCC
Confidence 89999999763211 299999999999999999999999987 6 49999999998643
No 22
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.95 E-value=2e-25 Score=246.05 Aligned_cols=231 Identities=17% Similarity=0.184 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 007012 297 KSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIV 376 (621)
Q Consensus 297 r~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~ 376 (621)
....+++......++++.++||+||||+.|.+..+.+...... ...+.+..+..+.+++.++++++..... .
T Consensus 229 m~~~l~~~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~~--~~~~~l~~~~~~~~~l~~li~~l~~l~~---~--- 300 (466)
T PRK10549 229 LASTLEKNEQMRRDFMADISHELRTPLAVLRGELEAIQDGVRK--FTPESVASLQAEVGTLTKLVDDLHQLSL---S--- 300 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh---h---
Confidence 3344444555568899999999999999999999998765433 2345567777788888888877743211 0
Q ss_pred hhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHH
Q 007012 377 RYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVL 456 (621)
Q Consensus 377 ~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL 456 (621)
.. . .+ .....++++.+++
T Consensus 301 ----------~~---------------~-------------------------------~~------~~~~~~~~~~~~l 318 (466)
T PRK10549 301 ----------DE---------------G-------------------------------AL------AYRKTPVDLVPLL 318 (466)
T ss_pred ----------cC---------------C-------------------------------Cc------ccccCCCCHHHHH
Confidence 00 0 00 0124678999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCC
Q 007012 457 GDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDM 536 (621)
Q Consensus 457 ~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI 536 (621)
+.++..++..+..+++.+.+..+ ....+.+|+..+.|++.|||+||++|++.++.|.|.+. ..++.+.|.|.|+|+||
T Consensus 319 ~~~~~~~~~~~~~~~i~i~~~~~-~~~~~~~d~~~l~qvl~nll~NAi~~~~~~~~I~i~~~-~~~~~~~i~V~D~G~Gi 396 (466)
T PRK10549 319 EVAGGAFRERFASRGLTLQLSLP-DSATVFGDPDRLMQLFNNLLENSLRYTDSGGSLHISAE-QRDKTLRLTFADSAPGV 396 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEEecC-CCcEEEeCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE-EcCCEEEEEEEecCCCc
Confidence 99999999888888888888763 44578899999999999999999999999899999995 45678999999999999
Q ss_pred CCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 537 HYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 537 ~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+++ +++|++||+......... +|+||||+||+++++.|||++.+.+.+ + +|++|+|.||....
T Consensus 397 ~~e~~~~lf~~~~~~~~~~~~~~----~g~GlGL~iv~~i~~~~~G~l~~~s~~------~-~G~~~~i~lP~~~~ 461 (466)
T PRK10549 397 SDEQLQKLFERFYRTEGSRNRAS----GGSGLGLAICLNIVEAHNGRIIAAHSP------F-GGVSITVELPLERD 461 (466)
T ss_pred CHHHHHHhccCcccCCCCcCCCC----CCCcHHHHHHHHHHHHcCCEEEEEECC------C-CeEEEEEEccCCCC
Confidence 988 999999998754432222 389999999999999999999999987 6 49999999998764
No 23
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.95 E-value=6.1e-26 Score=278.26 Aligned_cols=229 Identities=19% Similarity=0.212 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 007012 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (621)
Q Consensus 299 ~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~ 378 (621)
..+.++...+.+++++++|||||||++|.+++++|.......+...+.++.+...++++.++++++.+...+..
T Consensus 703 ~~~~~~~~~~~~~~~~isHelrtPL~~i~~~~~ll~~~~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~------ 776 (1197)
T PRK09959 703 NKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIES------ 776 (1197)
T ss_pred HHHHHHHHHHHHHHHhcChhhCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Confidence 33444555678999999999999999999999998765444444456777788888999988888854311000
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHH
Q 007012 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (621)
Q Consensus 379 ~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~ 458 (621)
.......+++++.+++++
T Consensus 777 --------------------------------------------------------------~~~~~~~~~~~l~~~i~~ 794 (1197)
T PRK09959 777 --------------------------------------------------------------GNYQLQPQWVDIPTLVQN 794 (1197)
T ss_pred --------------------------------------------------------------CCceeeeeeeCHHHHHHH
Confidence 000012467999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEE--Eec--CCeEEEEEEeCC
Q 007012 459 LFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA--AAP--AGDALVVIDDDG 533 (621)
Q Consensus 459 ~l~~~~~~a~~~~i~l~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~--~~~--~~~v~I~V~D~G 533 (621)
++..+...+..+++.+.+... +....+.+|+..|.||+.|||+||+||++.|+ |.|.+. ... ...+.|.|.|+|
T Consensus 795 ~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~-i~i~~~~~~~~~~~~~~~i~V~D~G 873 (1197)
T PRK09959 795 TCHSFGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGA-VKITTSLGHIDDNHAVIKMTIMDSG 873 (1197)
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCceEEEECHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEEeeecCCceEEEEEEEEcC
Confidence 999999998888888877652 44567999999999999999999999998753 444432 112 234789999999
Q ss_pred CCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 534 PDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 534 ~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+||+++ +++|+||++...... ..|+||||+|||++++.|||+|++.+.+ +. ||+|+|.||...
T Consensus 874 ~Gi~~~~~~~iF~~f~~~~~~~~------~~G~GLGL~i~~~iv~~~gG~i~v~s~~------~~-Gt~f~i~lP~~~ 938 (1197)
T PRK09959 874 SGLSQEEQQQLFKRYSQTSAGRQ------QTGSGLGLMICKELIKNMQGDLSLESHP------GI-GTTFTITIPVEI 938 (1197)
T ss_pred CCCCHHHHHHhhccccccccCCC------CCCcCchHHHHHHHHHHcCCEEEEEeCC------CC-cEEEEEEEEccc
Confidence 999998 999999997642211 1399999999999999999999999987 64 999999999864
No 24
>PRK09835 sensor kinase CusS; Provisional
Probab=99.94 E-value=3.1e-25 Score=245.36 Aligned_cols=233 Identities=16% Similarity=0.173 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007012 293 VMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTK 372 (621)
Q Consensus 293 ~l~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~ 372 (621)
.+.+....+++...++.+++++++|||||||+.|.+.++.+...........+.+..+..+..++..+++++.....
T Consensus 247 ~~n~m~~~l~~~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ll~~~~--- 323 (482)
T PRK09835 247 SFNHMIERIEDVFTRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQ--- 323 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 33444445556666678899999999999999999999887654433333445556666677777777777643211
Q ss_pred hhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeH
Q 007012 373 ANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNV 452 (621)
Q Consensus 373 ~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L 452 (621)
.. ... ......++++
T Consensus 324 ~~----------------------------------------------------------------~~~-~~~~~~~~~l 338 (482)
T PRK09835 324 AD----------------------------------------------------------------NNQ-LIPEKKMLDL 338 (482)
T ss_pred hc----------------------------------------------------------------CCC-CCCCceeecH
Confidence 00 000 0012467999
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeC
Q 007012 453 SDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDD 532 (621)
Q Consensus 453 ~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~ 532 (621)
.++++.++..+...+..+++.+.+. ..+..+.+|+..|.+|+.||++||++|+++++.|.|.+. ..++.+.|.|.|+
T Consensus 339 ~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~d~~~l~~vl~nll~Na~~~~~~~~~I~i~~~-~~~~~~~i~v~d~ 415 (482)
T PRK09835 339 ADEVGKVFDFFEAWAEERGVELRFV--GDPCQVAGDPLMLRRAISNLLSNALRYTPAGEAITVRCQ-EVDHQVQLVVENP 415 (482)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEe--CCCcEEEECHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE-EeCCEEEEEEEEC
Confidence 9999999999998887777777664 345678999999999999999999999998888999884 3556799999999
Q ss_pred CCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 533 GPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 533 G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
|+||+++ +++|++||+.+....... .|+||||+||+++++.|||+|++.+.+ +|++|+|.||..
T Consensus 416 G~gi~~~~~~~if~~f~~~~~~~~~~~----~g~GlGL~i~~~i~~~~~g~i~~~s~~--------~g~~~~i~lP~~ 481 (482)
T PRK09835 416 GTPIAPEHLPRLFDRFYRVDPSRQRKG----EGSGIGLAIVKSIVVAHKGTVAVTSDA--------RGTRFVISLPRL 481 (482)
T ss_pred CCCcCHHHHHHHhCCcccCCCCCCCCC----CCcchHHHHHHHHHHHCCCEEEEEECC--------CcEEEEEEeeCC
Confidence 9999998 899999998764433222 299999999999999999999999854 599999999964
No 25
>PRK10337 sensor protein QseC; Provisional
Probab=99.94 E-value=1e-25 Score=247.65 Aligned_cols=220 Identities=15% Similarity=0.131 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 007012 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (621)
Q Consensus 299 ~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~ 378 (621)
..+++...++++++++++|||||||+.|.+.++.+.......+.....++.+....+++.++++++..... .
T Consensus 228 ~~l~~~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ll~~~r--------~ 299 (449)
T PRK10337 228 ARTHAMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSDDDPQARKKALLQLHAGIDRATRLVDQLLTLSR--------L 299 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------c
Confidence 34455555667899999999999999999998876543323333445677788888899888888854211 0
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHH
Q 007012 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (621)
Q Consensus 379 ~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~ 458 (621)
.. .......+++++.++++.
T Consensus 300 -----------------------------------------------------------~~-~~~~~~~~~~~l~~~~~~ 319 (449)
T PRK10337 300 -----------------------------------------------------------DS-LDNLQDVAEIPLEDLLQS 319 (449)
T ss_pred -----------------------------------------------------------CC-CCCCCCCcccCHHHHHHH
Confidence 00 000113467999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCC
Q 007012 459 LFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHY 538 (621)
Q Consensus 459 ~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~ 538 (621)
++..+...+..+++.+.++.++....+.+|+..+.+++.|||+||+||++.++.|.|.+.. ..|+|.|+|+||++
T Consensus 320 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~vl~Nli~NA~k~~~~~~~i~i~~~~-----~~i~i~D~G~Gi~~ 394 (449)
T PRK10337 320 AVMDIYHTAQQAGIDVRLTLNAHPVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLNA-----RNFTVRDNGPGVTP 394 (449)
T ss_pred HHHHHHHHHHHcCCEEEEecCCCCceeecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEe-----eEEEEEECCCCCCH
Confidence 9999988888889999888765566789999999999999999999999998889888742 26999999999998
Q ss_pred C--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEe
Q 007012 539 M--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605 (621)
Q Consensus 539 e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~L 605 (621)
+ +++|++||+...... .|+||||+||++++++|||+|++.+.+ + +|++|+|.|
T Consensus 395 ~~~~~if~~f~~~~~~~~-------~g~GlGL~iv~~i~~~~gg~l~~~s~~------~-~G~~~~i~~ 449 (449)
T PRK10337 395 EALARIGERFYRPPGQEA-------TGSGLGLSIVRRIAKLHGMNVSFGNAP------E-GGFEAKVSW 449 (449)
T ss_pred HHHHHhcccccCCCCCCC-------CccchHHHHHHHHHHHcCCEEEEEecC------C-CeEEEEEeC
Confidence 8 999999997642211 299999999999999999999999877 5 499999875
No 26
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.94 E-value=1.6e-25 Score=245.21 Aligned_cols=228 Identities=19% Similarity=0.200 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 007012 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (621)
Q Consensus 295 ~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~ 374 (621)
.+....+++...+.+++.++++|||||||+++.++++.+.......+...+.++.+..+.+++..+++++..... .
T Consensus 228 n~m~~~l~~~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~---~- 303 (457)
T TIGR01386 228 NAMLGRLEDAFQRLSQFSADLAHELRTPLTNLLGQTQVALSQPRTGEEYREVLESNLEELERLSRMVSDMLFLAR---A- 303 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-
Confidence 333444555555667889999999999999999999887654333333445666667777777777777643211 0
Q ss_pred hhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHH
Q 007012 375 IVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSD 454 (621)
Q Consensus 375 i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~e 454 (621)
. . .......+++++.+
T Consensus 304 -~-----------~----------------------------------------------------~~~~~~~~~~~~~~ 319 (457)
T TIGR01386 304 -D-----------N----------------------------------------------------GQLALERVRLDLAA 319 (457)
T ss_pred -h-----------c----------------------------------------------------ccccccccccCHHH
Confidence 0 0 00001245789999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCC
Q 007012 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534 (621)
Q Consensus 455 lL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~ 534 (621)
+++.++..+...+..+++.+.+.. ...+.+|+..|.+++.|||+||+||++.++.|.|.+. ..++.+.|.|.|+|+
T Consensus 320 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~~~nll~Nai~~~~~~~~I~i~~~-~~~~~~~i~v~D~G~ 395 (457)
T TIGR01386 320 ELAKVAEYFEPLAEERGVRIRVEG---EGLVRGDPQMFRRAISNLLSNALRHTPDGGTITVRIE-RRSDEVRVSVSNPGP 395 (457)
T ss_pred HHHHHHHHHHHHHHhCCeEEEecC---CceEEECHHHHHHHHHHHHHHHHHcCCCCceEEEEEE-ecCCEEEEEEEeCCC
Confidence 999999999888877777666543 2678999999999999999999999998889999995 456789999999999
Q ss_pred CCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 535 DMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 535 GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
||+++ .++|++||+.+.+..... .|+||||+||+++++.|||++++.+ + + +|++|++.||
T Consensus 396 g~~~~~~~~~~~~~~~~~~~~~~~~----~g~GlGL~i~~~~~~~~~G~~~~~~-~------~-~G~~~~~~~P 457 (457)
T TIGR01386 396 GIPPEHLSRLFDRFYRVDPARSNSG----EGTGLGLAIVRSIMEAHGGRASAES-P------D-GKTRFILRFP 457 (457)
T ss_pred CCCHHHHHHhccccccCCcccCCCC----CCccccHHHHHHHHHHCCCEEEEEe-C------C-CceEEEEecC
Confidence 99998 899999998764433222 3999999999999999999999999 6 5 4999999998
No 27
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.94 E-value=4.4e-25 Score=241.37 Aligned_cols=214 Identities=19% Similarity=0.280 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 007012 298 SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR 377 (621)
Q Consensus 298 ~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~ 377 (621)
...+++..+++..++++++|||||||+.|+.+++++... .....+.+..+.+++.++++++.....
T Consensus 219 ~~~l~~~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~~~~------~~~~~~~i~~~~~~~~~~i~~~l~~~r-------- 284 (435)
T PRK09467 219 AAGIKQLEDDRTLLMAGVSHDLRTPLTRIRLATEMMSEE------DGYLAESINKDIEECNAIIEQFIDYLR-------- 284 (435)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 334445555567889999999999999999888776421 233455677777888888877743211
Q ss_pred hhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHH
Q 007012 378 YNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLG 457 (621)
Q Consensus 378 ~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~ 457 (621)
. .......++++.+++.
T Consensus 285 ~---------------------------------------------------------------~~~~~~~~~~l~~~~~ 301 (435)
T PRK09467 285 T---------------------------------------------------------------GQEMPMEMADLNALLG 301 (435)
T ss_pred c---------------------------------------------------------------cCCCCccccCHHHHHH
Confidence 0 0001235688999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCC
Q 007012 458 DLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (621)
Q Consensus 458 ~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~ 537 (621)
+++.... ..+..+.+..+.....+.+|+..|.+++.||++||+||+ ++.|.|.+. ..++.+.|+|.|+|+||+
T Consensus 302 ~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~l~~il~NLl~NA~k~~--~~~i~i~~~-~~~~~~~i~V~D~G~Gi~ 374 (435)
T PRK09467 302 EVIAAES----GYEREIETALQPGPIEVPMNPIAIKRALANLVVNAARYG--NGWIKVSSG-TEGKRAWFQVEDDGPGIP 374 (435)
T ss_pred HHHHHhh----hcCCeEEEecCCCCceEEECHHHHHHHHHHHHHHHHHhC--CCeEEEEEE-ecCCEEEEEEEecCCCcC
Confidence 9887665 255667666655555899999999999999999999997 367888884 456779999999999999
Q ss_pred CC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 538 YM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 538 ~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
++ +++|+||++++..... .|+||||+||+++++.|||++.+.+.+ + +|++|+++||..
T Consensus 375 ~~~~~~~~~~f~~~~~~~~~------~g~GlGL~iv~~i~~~~~g~l~i~~~~------~-~G~~~~i~lp~~ 434 (435)
T PRK09467 375 PEQLKHLFQPFTRGDSARGS------SGTGLGLAIVKRIVDQHNGKVELGNSE------E-GGLSARAWLPLT 434 (435)
T ss_pred HHHHHHhcCCcccCCCCCCC------CCeehhHHHHHHHHHHCCCEEEEEECC------C-CcEEEEEEEeCC
Confidence 88 9999999987533221 299999999999999999999998876 5 599999999975
No 28
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.94 E-value=5.8e-25 Score=233.43 Aligned_cols=206 Identities=20% Similarity=0.226 Sum_probs=161.9
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~ 387 (621)
.+++++.++|||||||++|.++.+++..... ++...+++..+...++++.++++++...
T Consensus 130 ~~~~~~~iaHelr~pL~~i~~~~~~l~~~~~-~~~~~~~~~~i~~~~~~l~~lv~~l~~~-------------------- 188 (348)
T PRK11073 130 ARDLVRGLAHEIKNPLGGLRGAAQLLSKALP-DPALTEYTKVIIEQADRLRNLVDRLLGP-------------------- 188 (348)
T ss_pred HHHHHHhhhHhhcChHHHHHHHHHHhhhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 3778999999999999999999999876543 3445677888888888888888877220
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 007012 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (621)
Q Consensus 388 ~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a 467 (621)
.+ .....++++..+++.+...+....
T Consensus 189 ----------------------------------------------------~~--~~~~~~~~l~~~~~~~~~~~~~~~ 214 (348)
T PRK11073 189 ----------------------------------------------------QR--PGTHVTESIHKVAERVVQLVSLEL 214 (348)
T ss_pred ----------------------------------------------------cC--CCCCccccHHHHHHHHHHHHhhhc
Confidence 00 011345688899998887776554
Q ss_pred hhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhc-CCCCeEEEEEEEec---------CCeEEEEEEeCCCCCC
Q 007012 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT-QVGGKVEIVSAAAP---------AGDALVVIDDDGPDMH 537 (621)
Q Consensus 468 ~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t-~~gg~I~I~~~~~~---------~~~v~I~V~D~G~GI~ 537 (621)
. +++.+.+...+....+.+|+..|.+|+.||++||++|+ +.++.|.|.+.... ...+.|.|+|+|+||+
T Consensus 215 ~-~~i~i~~~~~~~~~~i~~d~~~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~ 293 (348)
T PRK11073 215 P-DNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIP 293 (348)
T ss_pred c-CCcEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCC
Confidence 3 56777766544455789999999999999999999998 67788888763211 1136799999999999
Q ss_pred CC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 538 YM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 538 ~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
++ +++|+|||+.. . .|+||||+|||++++.|||+|++.+.+ +|++|+|+||.
T Consensus 294 ~~~~~~iF~~~~~~~----~------~g~GlGL~i~~~iv~~~gG~i~~~s~~--------~~~~f~i~lP~ 347 (348)
T PRK11073 294 PHLQDTLFYPMVSGR----E------GGTGLGLSIARNLIDQHSGKIEFTSWP--------GHTEFSVYLPI 347 (348)
T ss_pred HHHHhhccCCcccCC----C------CCccCCHHHHHHHHHHcCCeEEEEecC--------CceEEEEEEec
Confidence 98 99999998542 1 299999999999999999999999866 46999999996
No 29
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.94 E-value=1.2e-24 Score=252.40 Aligned_cols=230 Identities=16% Similarity=0.168 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 007012 295 DQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKAN 374 (621)
Q Consensus 295 ~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~ 374 (621)
.+....+++...+..++.+.++||+||||+.|.+..+.+.... .+....+.++.+....+++.++++++.....
T Consensus 472 n~M~~~L~~~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~~-~~~~~~~~le~i~~~i~~L~~li~~l~~~ar----- 545 (703)
T TIGR03785 472 AQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQA-LEQEKQKYLERAREGTERLSMILNNMSEATR----- 545 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 3334455566666688999999999999999999999886542 2334455677888888888888887754311
Q ss_pred hhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHH
Q 007012 375 IVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSD 454 (621)
Q Consensus 375 i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~e 454 (621)
+ .. .......+++++.+
T Consensus 546 ---l--------e~----------------------------------------------------~~~~~~~~~~dl~~ 562 (703)
T TIGR03785 546 ---L--------EQ----------------------------------------------------AIQSAEVEDFDLSE 562 (703)
T ss_pred ---h--------hc----------------------------------------------------ccccccceeecHHH
Confidence 0 00 00012346899999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCC
Q 007012 455 VLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGP 534 (621)
Q Consensus 455 lL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~ 534 (621)
+++.++..+...+..+++.+. .+.....+.+|+..|.+|+.|||+||+||++.++.|.|.+. ..++.+.|.|.|+|+
T Consensus 563 ll~~~i~~~~~~~~~~~i~l~--i~~~~~~i~~d~~~L~~il~NLI~NAik~s~~~~~I~I~~~-~~~~~v~I~V~D~G~ 639 (703)
T TIGR03785 563 VLSGCMQGYQMTYPPQRFELN--IPETPLVMRGSPELIAQMLDKLVDNAREFSPEDGLIEVGLS-QNKSHALLTVSNEGP 639 (703)
T ss_pred HHHHHHHHHHHHhhcCCEEEE--ecCCCeEEEECHHHHHHHHHHHHHHHHHHCCCCCeEEEEEE-EcCCEEEEEEEEcCC
Confidence 999999999988866555544 44455689999999999999999999999998889999884 456789999999999
Q ss_pred CCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 535 DMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 535 GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
||+++ +++|++|++........ ..|+||||+|||++++.|||+|.+.+.. +..|++|+|.||
T Consensus 640 GI~~e~~~~IFe~F~t~~~~~~~~----~~g~GLGL~Ivr~Iv~~~gG~I~v~s~~------~g~Gt~f~I~LP 703 (703)
T TIGR03785 640 PLPEDMGEQLFDSMVSVRDQGAQD----QPHLGLGLYIVRLIADFHQGRIQAENRQ------QNDGVVFRISLP 703 (703)
T ss_pred CCCHHHHHHHhCCCeecCCCCCCC----CCCccHHHHHHHHHHHHcCCEEEEEECC------CCCeEEEEEEeC
Confidence 99998 99999999764222211 1289999999999999999999999876 324999999998
No 30
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.94 E-value=4.5e-25 Score=238.94 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhh--cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 292 YVMDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLH--MKRSEISYDIVEDIMVQGDRLRGTLQELQDAVF 369 (621)
Q Consensus 292 ~~l~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~--l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~ 369 (621)
..|.+-+..|++++.+.+.|...++|+||+||..|.+|+++|..+ ...+++..+.+..+.+...++.++|+++..+-.
T Consensus 508 eela~l~r~lersn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~ 587 (750)
T COG4251 508 EELAQLRRELERSNAELRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSK 587 (750)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 356666777888888889999999999999999999999999988 445667777777787778888888877733200
Q ss_pred hhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCcee
Q 007012 370 LTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRP 449 (621)
Q Consensus 370 l~~~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~ 449 (621)
+.. .....++
T Consensus 588 -------------------------------------------------------------------l~~---~~~~l~~ 597 (750)
T COG4251 588 -------------------------------------------------------------------LGL---TEAPLQP 597 (750)
T ss_pred -------------------------------------------------------------------hcc---ccCCCCC
Confidence 000 0112457
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecCCeEEEE
Q 007012 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG-GKVEIVSAAAPAGDALVV 528 (621)
Q Consensus 450 v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g-g~I~I~~~~~~~~~v~I~ 528 (621)
.++.+++.+++..+.......++.+.+. + .+.+.+|+..+.|++.|||.||+||..++ ..|.|...+ .++.+.+.
T Consensus 598 td~~~vv~~vl~~l~~ri~dtgaei~i~--~-lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r-~ed~~t~s 673 (750)
T COG4251 598 TDVQKVVDKVLLELSQRIADTGAEIRIA--P-LPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAER-QEDEWTFS 673 (750)
T ss_pred cchHHHHHHHHHhcccccccccceEEec--c-cceeecCHHHHHHHHHHHHhhheecCCCCCCceEEeeec-cCCceEEE
Confidence 8999999999999988887777777663 2 56799999999999999999999998776 689999754 56789999
Q ss_pred EEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 529 IDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 529 V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
|.|+|.||++. +++|..|.+.. +... + .|+|+||+|||+|++.|+|+|++++.+ |+ |.||.+++|
T Consensus 674 V~dng~Gi~~a~~~riF~iFqRl~-s~~~-y----~gtG~GL~I~kkI~e~H~G~i~vEs~~------gE-gsTF~f~lp 740 (750)
T COG4251 674 VRDNGIGIDPAYFERIFVIFQRLH-SRDE-Y----LGTGLGLAICKKIAERHQGRIWVESTP------GE-GSTFYFTLP 740 (750)
T ss_pred ecCCCCCcCHHHHHHHHHHHHhcC-chhh-h----cCCCccHHHHHHHHHHhCceEEEeecC------CC-ceeEEEEee
Confidence 99999999998 99999987764 2222 2 289999999999999999999999998 86 999999999
Q ss_pred CCCCCCC
Q 007012 607 SPAPLSD 613 (621)
Q Consensus 607 ~~~~~~~ 613 (621)
....+.+
T Consensus 741 ~~~~e~~ 747 (750)
T COG4251 741 VGGEEPG 747 (750)
T ss_pred cCCcCcc
Confidence 9876544
No 31
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.94 E-value=1.1e-24 Score=227.24 Aligned_cols=217 Identities=18% Similarity=0.217 Sum_probs=174.7
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHM-KRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l-~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i 386 (621)
+.++++.++||+||||+.|.++.++|.... ..++...++++.|....+++.++++++..... .
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~--------~-------- 177 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGPDEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSR--------L-------- 177 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--------
Confidence 356899999999999999999999887653 22334456677888888999888888854311 0
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 007012 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (621)
Q Consensus 387 ~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~ 466 (621)
. .........++++.+++..++..+...
T Consensus 178 ~----------------------------------------------------~~~~~~~~~~~~l~~~i~~~~~~~~~~ 205 (333)
T TIGR02966 178 E----------------------------------------------------SAASPLEDEPVDMPALLDHLRDEAEAL 205 (333)
T ss_pred h----------------------------------------------------cCCccccccccCHHHHHHHHHHHHHHH
Confidence 0 000112346799999999999999999
Q ss_pred HhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccC
Q 007012 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLT 544 (621)
Q Consensus 467 a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe 544 (621)
+..+++.+.+.. .....+.+|+..|.+|+.||+.||++|++.++.|.|.+.. .++.+.|.|.|+|+||+++ +++|+
T Consensus 206 ~~~~~i~i~~~~-~~~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~i~i~~~~-~~~~~~i~i~d~G~gi~~~~~~~if~ 283 (333)
T TIGR02966 206 SQGKNHQITFEI-DGGVDVLGDEDELRSAFSNLVSNAIKYTPEGGTITVRWRR-DGGGAEFSVTDTGIGIAPEHLPRLTE 283 (333)
T ss_pred HHHcCcEEEEcC-CCCceEEECHHHHHHHHHHHHHHhheeCCCCCeEEEEEEE-cCCEEEEEEEecCCCCCHHHHhhhcc
Confidence 888888988877 5567899999999999999999999999988899998854 5567999999999999988 99999
Q ss_pred CccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEe
Q 007012 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605 (621)
Q Consensus 545 ~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~L 605 (621)
+|++......... .|+|+||++|+.+++.|||++++.+.+ +. ||+|+|+|
T Consensus 284 ~~~~~~~~~~~~~----~g~glGL~~~~~~~~~~gG~i~~~s~~------~~-Gt~~~i~l 333 (333)
T TIGR02966 284 RFYRVDKSRSRDT----GGTGLGLAIVKHVLSRHHARLEIESEL------GK-GSTFSFIF 333 (333)
T ss_pred CceecCcccccCC----CCCcccHHHHHHHHHHCCCEEEEEecC------CC-CeEEEEEC
Confidence 9997543222222 289999999999999999999999987 64 99999975
No 32
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.93 E-value=3.1e-24 Score=235.91 Aligned_cols=229 Identities=18% Similarity=0.236 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 007012 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (621)
Q Consensus 294 l~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~ 373 (621)
+.+....+++...++.+++++++|||||||+.|+....++...... ...+..+..+.+++.++++++.....
T Consensus 229 ~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~~~~~----~~~~~~i~~~~~~l~~~i~~l~~~~~---- 300 (461)
T PRK09470 229 FNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLATALLRRRQGE----SKELERIETEAQRLDSMINDLLVLSR---- 300 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444455666666678899999999999999999988887653221 23456677888899999888854211
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHH
Q 007012 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (621)
Q Consensus 374 ~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~ 453 (621)
. .. ......+.+++.
T Consensus 301 ----~-----------------------------------------------------------~~--~~~~~~~~~~l~ 315 (461)
T PRK09470 301 ----N-----------------------------------------------------------QQ--KNHLERETFKAN 315 (461)
T ss_pred ----h-----------------------------------------------------------hc--ccccccceecHH
Confidence 0 00 001124578999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCC
Q 007012 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (621)
Q Consensus 454 elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G 533 (621)
+++++++..+...+...++.+++........+.+|+..|.+++.||++||++|++. .|.|.+. ..++.+.|+|.|+|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~nli~NA~~~~~~--~i~i~~~-~~~~~~~i~V~D~G 392 (461)
T PRK09470 316 SLWSEVLEDAKFEAEQMGKSLTVSAPPGPWPINGNPNALASALENIVRNALRYSHT--KIEVAFS-VDKDGLTITVDDDG 392 (461)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEecCCcceEEEECHHHHHHHHHHHHHHHHHhCCC--cEEEEEE-EECCEEEEEEEECC
Confidence 99999999888777778888888754566789999999999999999999999863 5677663 35577899999999
Q ss_pred CCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 534 PDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 534 ~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+||+++ +++|++||+......... .|+||||+||+++++.|||++.+.+.+ + +||+|+|+||...
T Consensus 393 ~Gi~~~~~~~if~~~~~~~~~~~~~~----~g~GlGL~iv~~~v~~~~G~l~~~s~~------~-~Gt~~~i~lp~~~ 459 (461)
T PRK09470 393 PGVPEEEREQIFRPFYRVDEARDRES----GGTGLGLAIVENAIQQHRGWVKAEDSP------L-GGLRLTIWLPLYK 459 (461)
T ss_pred CCCCHHHHHHhcCCCccCCcccCCCC----CCcchhHHHHHHHHHHCCCEEEEEECC------C-CeEEEEEEeeCCC
Confidence 999998 999999998653332222 389999999999999999999999887 6 4999999999864
No 33
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.93 E-value=5.6e-24 Score=239.62 Aligned_cols=212 Identities=18% Similarity=0.276 Sum_probs=174.8
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~ 387 (621)
..++++.++||+||||+.|.++.+++... ..+....+.++.|..+.+++..+++++...
T Consensus 390 l~~~~~~~~hel~~~l~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~-------------------- 448 (607)
T PRK11360 390 LGELVAGVAHEIRNPLTAIRGYVQIWRQQ-TSDPPSQEYLSVVLREVDRLNKVIDQLLEF-------------------- 448 (607)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 46788999999999999999999998765 344455677888888899998888877431
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 007012 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (621)
Q Consensus 388 ~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a 467 (621)
++.......++++.+++..+...+....
T Consensus 449 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (607)
T PRK11360 449 ----------------------------------------------------SRPRESQWQPVSLNALVEEVLQLFQTAG 476 (607)
T ss_pred ----------------------------------------------------hCCCcCccceecHHHHHHHHHHHHHHhh
Confidence 1111123568999999999999998776
Q ss_pred hhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCC
Q 007012 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTP 545 (621)
Q Consensus 468 ~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~ 545 (621)
..+++.+.+..++....+.+|+..|.+++.||+.||++|+..++.|.|.+....++.+.|.|.|+|+||+++ .++|+|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~ 556 (607)
T PRK11360 477 VQARVDFETELDNELPPIWADPELLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDP 556 (607)
T ss_pred hccCcEEEEEcCCCCCeEEECHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCC
Confidence 667888888775555678999999999999999999999988889999885433333999999999999998 899999
Q ss_pred ccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 546 F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
|++.. . .|+|+||+++|++++.|||+|++++.+ +. ||+|+|+||...
T Consensus 557 ~~~~~----~------~g~glGL~~~~~~~~~~~G~i~~~s~~------~~-Gt~~~i~lp~~~ 603 (607)
T PRK11360 557 FFTTK----A------KGTGLGLALSQRIINAHGGDIEVESEP------GV-GTTFTLYLPINP 603 (607)
T ss_pred ceeCC----C------CCCchhHHHHHHHHHHcCCEEEEEEcC------CC-ceEEEEEecCCC
Confidence 98542 1 289999999999999999999999987 64 999999999854
No 34
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.92 E-value=3.4e-23 Score=227.82 Aligned_cols=216 Identities=22% Similarity=0.269 Sum_probs=174.7
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~ 388 (621)
.++++.++||+||||+.+++.++++... ...+...+.++.+..+.+++..+++++..+..+.
T Consensus 257 ~~~~~~~~h~l~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~----------------- 318 (475)
T PRK11100 257 EQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRARFTGNILTQSARLQQLIDRLLELARLE----------------- 318 (475)
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 5678899999999999999999988763 2334456778888888899998888885431100
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 007012 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (621)
Q Consensus 389 s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~ 468 (621)
. ........++++.++++.++..+...+.
T Consensus 319 --------------------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (475)
T PRK11100 319 --------------------------------------------------Q-RQELEVLEPVALAALLEELVEAREAQAA 347 (475)
T ss_pred --------------------------------------------------c-CCCCccceeccHHHHHHHHHHHHHHHHH
Confidence 0 0000124679999999999999999888
Q ss_pred hcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCc
Q 007012 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPF 546 (621)
Q Consensus 469 ~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F 546 (621)
.+++.+.+..+ +..+.+|...|.+++.|||.||++|+..++.|.|.+. ..++.+.|.|+|+|.||+++ .++|++|
T Consensus 348 ~~~i~~~~~~~--~~~~~~~~~~l~~vl~nli~Na~~~~~~~~~i~i~~~-~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~ 424 (475)
T PRK11100 348 AKGITLRLRPD--DARVLGDPFLLRQALGNLLDNAIDFSPEGGTITLSAE-VDGEQVALSVEDQGPGIPDYALPRIFERF 424 (475)
T ss_pred hCCceEEEeCC--CceEEECHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE-EcCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 88888888664 5678999999999999999999999988889999985 45678999999999999987 9999999
Q ss_pred cccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 547 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 547 ~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
++....... ..|+||||++|+++++.|||.+.+.+.+ + +||+|.|.||..
T Consensus 425 ~~~~~~~~~-----~~~~GlGL~i~~~~~~~~~G~i~i~s~~------~-~Gt~v~i~lp~~ 474 (475)
T PRK11100 425 YSLPRPANG-----RKSTGLGLAFVREVARLHGGEVTLRNRP------E-GGVLATLTLPRH 474 (475)
T ss_pred ccCCCCCCC-----CCCcchhHHHHHHHHHHCCCEEEEEEcC------C-CeEEEEEEeeCC
Confidence 865321111 1289999999999999999999999977 6 499999999975
No 35
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-23 Score=227.26 Aligned_cols=208 Identities=14% Similarity=0.203 Sum_probs=169.9
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSE-----ISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~-----~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l 383 (621)
.+-...++||||||||-|+..++.|.+++.+.- .-++..+.|++|...+.++++++..
T Consensus 487 ~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~a----------------- 549 (712)
T COG5000 487 GDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRA----------------- 549 (712)
T ss_pred HHHHHHHHHHhcCCCchhhhhHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 566667999999999999999999998876532 2245677899999999999999833
Q ss_pred hhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHH
Q 007012 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (621)
Q Consensus 384 ~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~ 463 (621)
++|....+++..||.+++.+++..+
T Consensus 550 -------------------------------------------------------fARmP~p~~e~~dL~~ll~e~~~L~ 574 (712)
T COG5000 550 -------------------------------------------------------FARMPAPKLEKSDLRALLKEVSFLY 574 (712)
T ss_pred -------------------------------------------------------HhcCCCCCCCcchHHHHHHHHHHHH
Confidence 3444445678899999999999888
Q ss_pred HHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcC-------CCCeEEEEEEEecCCeEEEEEEeCCCCC
Q 007012 464 RPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQ-------VGGKVEIVSAAAPAGDALVVIDDDGPDM 536 (621)
Q Consensus 464 ~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~-------~gg~I~I~~~~~~~~~v~I~V~D~G~GI 536 (621)
+... ..+.+..+...++.+...|+..|.|++.|||.||.++.. +++.|+++.. ..++.+++.|.|||.|+
T Consensus 575 e~~~--~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~-~~~g~i~v~V~DNGkG~ 651 (712)
T COG5000 575 EIGN--DHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLD-DADGRIVVDVIDNGKGF 651 (712)
T ss_pred hccC--CCeEEEeecCCCceeeecCHHHHHHHHHHHHHhHHHHhhhcccccCCcceEEEEEe-cCCCeEEEEEecCCCCC
Confidence 7532 457777777777888999999999999999999999743 2235677664 35578999999999999
Q ss_pred CCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 537 HYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 537 ~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
|.+ .++|+||.+ ++.+ |+||||+|||+|+|.|||.|++.+.+ +.+|.++.+.||.
T Consensus 652 p~e~r~r~~EPYvT----tr~K------GTGLGLAiVKkIvEeHGG~leL~da~------d~~GA~i~i~fp~ 708 (712)
T COG5000 652 PRENRHRALEPYVT----TREK------GTGLGLAIVKKIVEEHGGRLELHNAP------DFDGAMIRIKFPL 708 (712)
T ss_pred ChHHhhhhccCcee----cccc------cccccHHHHHHHHHhcCCeEEecCCC------CCCCcEEEEEccc
Confidence 999 999999873 3332 99999999999999999999999876 4569999999997
No 36
>PRK13557 histidine kinase; Provisional
Probab=99.91 E-value=1.4e-22 Score=226.65 Aligned_cols=214 Identities=18% Similarity=0.186 Sum_probs=163.3
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRS----EISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~----~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l 383 (621)
...++..++||+||||+.|.++.+++....... ....+.++.|....+++..+++++...
T Consensus 163 l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~---------------- 226 (540)
T PRK13557 163 LGQLTGGIAHDFNNLLQVMSGYLDVIQAALSHPDADRGRMARSVENIRAAAERAATLTQQLLAF---------------- 226 (540)
T ss_pred hhhhhhhhhHHhhhHHHHHHhHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 356888999999999999999999987654432 223455666777777777777777321
Q ss_pred hhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHH
Q 007012 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAV 463 (621)
Q Consensus 384 ~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~ 463 (621)
++........+++..++..+...+
T Consensus 227 --------------------------------------------------------~~~~~~~~~~~~l~~~i~~~~~~~ 250 (540)
T PRK13557 227 --------------------------------------------------------ARKQRLEGRVLNLNGLVSGMGELA 250 (540)
T ss_pred --------------------------------------------------------hCcCCCCCcccCHHHHHHHHHHHH
Confidence 011111235678889988877765
Q ss_pred HHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe--------------cCCeEEEEE
Q 007012 464 RPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAA--------------PAGDALVVI 529 (621)
Q Consensus 464 ~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~--------------~~~~v~I~V 529 (621)
.... .+++.+.+...+....+.+|+..+.++|.||+.||++|++.++.|.|.+... .++.+.|.|
T Consensus 251 ~~~~-~~~~~i~~~~~~~~~~~~~d~~~l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v 329 (540)
T PRK13557 251 ERTL-GDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAV 329 (540)
T ss_pred HHhc-CCCeEEEEecCCCCCceeeCHHHHHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEE
Confidence 5432 3556666655444556889999999999999999999999888888876421 335688999
Q ss_pred EeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 530 DDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 530 ~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
.|+|+||+++ .++|++||+... . ..|+||||+|||.+++.|||.|++.+.+ +. |++|+|+||.
T Consensus 330 ~D~G~Gi~~~~~~~if~~~~~~~~----~----~~g~GlGL~i~~~~v~~~gG~i~~~s~~------~~-G~~f~i~lP~ 394 (540)
T PRK13557 330 TDTGSGMPPEILARVMDPFFTTKE----E----GKGTGLGLSMVYGFAKQSGGAVRIYSEV------GE-GTTVRLYFPA 394 (540)
T ss_pred EcCCCCCCHHHHHhccCCCcccCC----C----CCCCCccHHHHHHHHHHCCCEEEEEecC------CC-ceEEEEEeeC
Confidence 9999999998 999999996531 1 1299999999999999999999999987 64 9999999998
Q ss_pred CC
Q 007012 608 PA 609 (621)
Q Consensus 608 ~~ 609 (621)
..
T Consensus 395 ~~ 396 (540)
T PRK13557 395 SD 396 (540)
T ss_pred CC
Confidence 64
No 37
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.90 E-value=8.5e-22 Score=202.90 Aligned_cols=217 Identities=23% Similarity=0.312 Sum_probs=164.9
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 007012 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (621)
Q Consensus 307 q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i 386 (621)
....+++.++||+||||+++.++..++... .. +........+....+++..+++++.........
T Consensus 114 ~~~~~~~~~~hel~~pl~~i~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~------------- 178 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG-LL-DPQRELLEIIEEEAERLLRLVNDLLDLSRLEAG------------- 178 (336)
T ss_pred HHHHHHHhhhhhhcCcHHHHHHHHHHhccC-Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------
Confidence 368899999999999999999988855443 11 113455566666777777777775332110000
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 007012 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (621)
Q Consensus 387 ~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~ 466 (621)
. +.. .....+++..++..++..+...
T Consensus 179 ----------------------------------------------------~-~~~-~~~~~~~l~~~~~~~~~~~~~~ 204 (336)
T COG0642 179 ----------------------------------------------------T-KLK-LLLELVDLAELLEEVVRLLAPL 204 (336)
T ss_pred ----------------------------------------------------C-ccc-cCCCCcCHHHHHHHHHHHHHHH
Confidence 0 000 0134566999999999999888
Q ss_pred HhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccC
Q 007012 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLT 544 (621)
Q Consensus 467 a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe 544 (621)
+....+.+....+ ....+.+|...+.+++.|||+||++|++ ++.|.|.+.. .++.+.+.|.|+|+||+++ +++|+
T Consensus 205 ~~~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~~i~i~~~~-~~~~i~i~V~D~G~Gi~~~~~~~if~ 281 (336)
T COG0642 205 AQEKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP-GGEITISVRQ-DDEQVTISVEDTGPGIPEEELERIFE 281 (336)
T ss_pred HHHcCCEEEEecC-CCceEeeCHHHHHHHHHHHHHHHhccCC-CCeEEEEEEe-cCCeEEEEEEcCCCCCCHHHHHHhcc
Confidence 7767777765442 4568999999999999999999999999 7899999954 3347999999999999998 89999
Q ss_pred CccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 545 ~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+|++..... .|+|+||+||+.+++.|||.+.+.+.+ +. ||+|+++||....
T Consensus 282 ~~~~~~~~~--------~g~GlGL~i~~~~~~~~~g~i~~~~~~------~~-Gt~~~i~lP~~~~ 332 (336)
T COG0642 282 PFFRTDKSR--------SGTGLGLAIVKRIVELHGGTISVESEP------GK-GTTFTIRLPLAPA 332 (336)
T ss_pred CeeccCCCC--------CCCCccHHHHHHHHHHcCCEEEEEecC------CC-ceEEEEEEecccc
Confidence 999664221 189999999999999999999999976 64 8999999999764
No 38
>PRK13560 hypothetical protein; Provisional
Probab=99.90 E-value=2.9e-22 Score=234.84 Aligned_cols=206 Identities=13% Similarity=0.174 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhh
Q 007012 299 MLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRY 378 (621)
Q Consensus 299 ~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~ 378 (621)
+.++++..++.+|+++++|||||||++|.++++++...+.... ...++.. ..+++..+...+...
T Consensus 596 ~~L~~a~~~~~~~l~~isHelrnpL~~I~~~~~l~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~l----------- 660 (807)
T PRK13560 596 EKIKAALTEKEVLLKEIHHRVKNNLQIISSLLDLQAEKLHDEE-AKCAFAE---SQDRICAMALAHEKL----------- 660 (807)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhChHHHHHHHHHHhhhhcCCHH-HHHHHHH---HHHHHHHHHHHHHHH-----------
Confidence 4556667778999999999999999999999998876654322 2222221 222222221111000
Q ss_pred hHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHH
Q 007012 379 NEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGD 458 (621)
Q Consensus 379 ~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~ 458 (621)
. ......++++.++++.
T Consensus 661 -------------------------------------------------------------~--~~~~~~~~~l~~~i~~ 677 (807)
T PRK13560 661 -------------------------------------------------------------Y--QSEDLADIDFLDYIES 677 (807)
T ss_pred -------------------------------------------------------------h--ccccchhccHHHHHHH
Confidence 0 0012356889999999
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCceEE-EEcHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEEeCCC
Q 007012 459 LFEAVRPLAHMQQRQVELSELSQSLLV-AVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGP 534 (621)
Q Consensus 459 ~l~~~~~~a~~~~i~l~l~~~~~~~~V-~~D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G~ 534 (621)
++..+...+......+.+.+......+ ..+...+.+||.||+.||+||+.++ +.|.|.+....++.+.|.|.|||+
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~ 757 (807)
T PRK13560 678 LTAHLKNSFAIDFGRIDCKIDADDGCLDIDKAIPCGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGI 757 (807)
T ss_pred HHHHHHHHhccccCceEEEEecCccccccccccchHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCC
Confidence 998888776656656666553333333 3345568899999999999998543 578888854435679999999999
Q ss_pred CCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 535 DMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 535 GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
|||++ |. |. .|.||||+|||.|++.|||+|++.| + +||+|+|+||..+
T Consensus 758 GI~~~---~~-~~--------------~~~gLGLai~~~iv~~~gG~I~v~S--------~-~Gt~F~i~lP~~~ 805 (807)
T PRK13560 758 GLPAG---FD-FR--------------AAETLGLQLVCALVKQLDGEIALDS--------R-GGARFNIRFPMSP 805 (807)
T ss_pred cCCcc---cc-cc--------------ccCCccHHHHHHHHHHcCCEEEEEc--------C-CceEEEEEecCCC
Confidence 99975 11 11 1788999999999999999999998 4 4999999999865
No 39
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.87 E-value=1.9e-20 Score=210.04 Aligned_cols=127 Identities=25% Similarity=0.157 Sum_probs=100.2
Q ss_pred HHhhcCCeEEEEecCCce--EEEEcHHHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--
Q 007012 466 LAHMQQRQVELSELSQSL--LVAVEEPALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM-- 539 (621)
Q Consensus 466 ~a~~~~i~l~l~~~~~~~--~V~~D~~~L~qVL~NLL~NAlk~t~--~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e-- 539 (621)
.+..+++.+.+....... ....+...|.+|+.||++||++|+. .++.|.|.+. ..++.+.|.|.|+|+||+++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~-~~~~~~~i~V~D~G~gi~~~~~ 484 (542)
T PRK11086 406 RARELGITLIISEDSQLPDSGDEDQVHELITILGNLIENALEAVGGEEGGEISVSLH-YRNGWLHCEVSDDGPGIAPDEI 484 (542)
T ss_pred HHHHcCCEEEEeCCCCCCcccccccHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE-EcCCEEEEEEEECCCCCCHHHH
Confidence 344577777776532211 1223345799999999999999974 4568888884 45678999999999999998
Q ss_pred CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 540 MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 540 ~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+++|++|++.. . .|+||||+|||++++.|||+|++.+.+ +. |++|+|+||....
T Consensus 485 ~~iF~~~~~~~----~------~g~GlGL~iv~~iv~~~~G~i~v~s~~------~~-G~~f~i~lP~~~~ 538 (542)
T PRK11086 485 DAIFDKGYSTK----G------SNRGVGLYLVKQSVENLGGSIAVESEP------GV-GTQFFVQIPWDGE 538 (542)
T ss_pred HHHHhCCCccC----C------CCCcCcHHHHHHHHHHcCCEEEEEeCC------CC-cEEEEEEEeCCCC
Confidence 89999998542 1 299999999999999999999999987 64 9999999998653
No 40
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.86 E-value=1e-19 Score=203.53 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=142.3
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcc
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNN 388 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~ 388 (621)
+++.+.+.||+||||++|++.++++.+....++...+.++.|.+.+.++.+.++++...
T Consensus 303 ~~ia~elhdeI~~pLtaI~~~a~ll~~~~~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~--------------------- 361 (495)
T PRK11644 303 RDVARELHDEIGQTITAIRTQAGIIKRLAADNASVKQSAQLIEQLSLGVYDTVRRLLGR--------------------- 361 (495)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 45667788899999999999999876533333334456666776677766666655210
Q ss_pred cCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHh
Q 007012 389 SAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAH 468 (621)
Q Consensus 389 s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~ 468 (621)
......+.+++.+.+++++..+....
T Consensus 362 -----------------------------------------------------lr~~~l~~~~L~~~l~~l~~~l~~~~- 387 (495)
T PRK11644 362 -----------------------------------------------------LRPRQLDDLTLEQAIRSLMREMELED- 387 (495)
T ss_pred -----------------------------------------------------cCCcccccCCHHHHHHHHHHHHHHhh-
Confidence 00012346789999999998887544
Q ss_pred hcCCeEEEEec-CCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCcc
Q 007012 469 MQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFG 547 (621)
Q Consensus 469 ~~~i~l~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~ 547 (621)
.++.++++.. +.......++..+.+++.|+++||+||++. +.|.|.+. .+++.+.+.|.|+|+||+++ +
T Consensus 388 -~~~~v~l~~~~~~~~l~~~~~~~L~ril~nlL~NAiKha~~-~~I~I~l~-~~~~~i~l~V~DnG~Gi~~~----~--- 457 (495)
T PRK11644 388 -RGIVSHLDWRIDESALSETQRVTLFRVCQEGLNNIVKHADA-SAVTLQGW-QQDERLMLVIEDDGSGLPPG----S--- 457 (495)
T ss_pred -cCceEEEEecCCcccCChhHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEE-EcCCEEEEEEEECCCCCCcC----C---
Confidence 4555555532 222345667788999999999999999986 67888884 45678999999999999853 0
Q ss_pred ccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 548 SELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 548 ~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
.|.|+||+++|++++.|||++++.+ . +||+|++.+|.
T Consensus 458 --------------~~~GLGL~ivr~iv~~~GG~i~v~S-~--------~Gt~f~I~LP~ 494 (495)
T PRK11644 458 --------------GQQGFGLRGMRERVTALGGTLTISC-T--------HGTRLSVSLPQ 494 (495)
T ss_pred --------------CCCCCcHHHHHHHHHHcCCEEEEEc-C--------CCEEEEEEEeC
Confidence 1789999999999999999999988 3 49999999996
No 41
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.85 E-value=1.4e-19 Score=204.10 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=102.4
Q ss_pred HhhcCCeEEEEecC--CceEEEEcHHHHHHHHHHHHHHHHhhc---CC-CCeEEEEEEEecCCeEEEEEEeCCCCCCCC-
Q 007012 467 AHMQQRQVELSELS--QSLLVAVEEPALRQALSNLIEGALMRT---QV-GGKVEIVSAAAPAGDALVVIDDDGPDMHYM- 539 (621)
Q Consensus 467 a~~~~i~l~l~~~~--~~~~V~~D~~~L~qVL~NLL~NAlk~t---~~-gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e- 539 (621)
+.+.++.+.+.... .......|+..|.+|+.||++||++|. +. ++.|.|.+. ..++.+.|.|.|+|+||+++
T Consensus 406 ~~~~~i~~~~~~~~~~~~l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~-~~~~~~~i~V~D~G~Gi~~~~ 484 (545)
T PRK15053 406 ARELGLKMVIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLRSDEGNKIVELFLS-DEGDDVVIEVADQGCGVPESL 484 (545)
T ss_pred HHHhCCceEEcCCCccccccccCCHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEE-ECCCEEEEEEEeCCCCcCHHH
Confidence 34466777665422 123457799999999999999999994 33 367888884 45577999999999999998
Q ss_pred -CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 540 -MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 540 -~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+++|++||+.... . .+|+||||+|||++++.|||+|++.+.+ +. ||+|+|.||....
T Consensus 485 ~~~iF~~~~~tk~~---~----~~g~GlGL~ivk~iv~~~~G~i~v~s~~------~~-Gt~f~i~lP~~~~ 542 (545)
T PRK15053 485 RDKIFEQGVSTRAD---E----PGEHGIGLYLIASYVTRCGGVITLEDND------PC-GTLFSIFIPKVKP 542 (545)
T ss_pred HHHHhCCCCCCCCC---C----CCCceeCHHHHHHHHHHcCCEEEEEECC------CC-eEEEEEEECCCCC
Confidence 8999999964311 1 1279999999999999999999999987 64 9999999998653
No 42
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.84 E-value=3.6e-19 Score=186.79 Aligned_cols=210 Identities=19% Similarity=0.256 Sum_probs=159.4
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMK--RSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~--~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i 386 (621)
++.|..++|||..||+++..|.=.-.+.+. +.......+..|..-.+|+..+++.+...
T Consensus 452 GqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF------------------- 512 (673)
T COG4192 452 GQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSLRQF------------------- 512 (673)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 778889999999999999987644333332 22334455555555556666666655331
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCC--CCceeeeHHHHHHHHHHHHH
Q 007012 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ--NGIRPCNVSDVLGDLFEAVR 464 (621)
Q Consensus 387 ~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~--~~~~~v~L~elL~~~l~~~~ 464 (621)
+|-.. ....|+++.++++.+++.+.
T Consensus 513 -----------------------------------------------------~Rk~s~~~~lqpV~L~~~v~~AweLl~ 539 (673)
T COG4192 513 -----------------------------------------------------ARKNSSDESLQPVRLNSVVEQAWELLQ 539 (673)
T ss_pred -----------------------------------------------------HhccCCCCCcccccHHHHHHHHHHHHH
Confidence 11111 12578999999999999998
Q ss_pred HHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCC-CeEEEEEEEecCCeEEEEEEeCCCCCCCC--Cc
Q 007012 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVG-GKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH 541 (621)
Q Consensus 465 ~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g-g~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~ 541 (621)
...+.+. +.+..+.+.++|.+|...++|||.||+-||++++... ..|.|.+...+++.++|.|.|+|+|.|-+ ++
T Consensus 540 ~khk~rQ--~~Li~ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dk 617 (673)
T COG4192 540 TKHKRRQ--IKLINPTDDLMVMGDAVSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDK 617 (673)
T ss_pred hhhhhcc--ccccCCcccceecchhhhHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHH
Confidence 8775544 4444456788999999999999999999999976544 57777775446677999999999999988 99
Q ss_pred ccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 542 SLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 542 iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+|.||.+. +.. |.||||+||..+|++|.|++.+.|.- .+ +.++.+.|....
T Consensus 618 Ll~PFtts----K~v------gLGlGLSIsqSlmeqmqG~l~lAStL------t~-nA~ViL~f~v~~ 668 (673)
T COG4192 618 LLTPFTTS----KEV------GLGLGLSISQSLMEQMQGRLALASTL------TK-NAMVILEFQVDE 668 (673)
T ss_pred hcCCcccc----ccc------ccccchhHHHHHHHHhcCcchHhhhc------cc-CcEEEEEEeecc
Confidence 99998633 332 99999999999999999999999876 54 899999987653
No 43
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.81 E-value=3.2e-17 Score=186.48 Aligned_cols=264 Identities=19% Similarity=0.174 Sum_probs=171.1
Q ss_pred CCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccCHHHHH
Q 007012 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (621)
Q Consensus 200 ~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~ 279 (621)
...+.+||..++..+|++.+..|. . . .|+++++.
T Consensus 298 ~~~~~~~l~~~~~~~G~~~~~~~~----------------------~-~-----------------------~l~~~~~~ 331 (569)
T PRK10600 298 GTTLKWRLSDKHGQYGILLATLPQ----------------------G-R-----------------------HLSHDQQQ 331 (569)
T ss_pred CceEEEEeecCCcceEEEEEEcCC----------------------C-C-----------------------CCCHHHHH
Confidence 468899999999999999776200 0 0 14567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HhHHHHHhHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHH
Q 007012 280 NAINICRSLAMAYVMDQKSMLLQQ-SSWQNNARMS-NLVEQIRGPLSSIQTLSKMLSLHMK-RSEISYDIVEDIMVQGDR 356 (621)
Q Consensus 280 ~~~~ia~~lala~~l~qr~~~lqq-~~~q~~~~la-~lsHELRtPLtaI~~~~~lL~~~l~-~~~~~~~~~e~I~~~~~r 356 (621)
.++.++.+++.+..+++.....++ ...+++.+++ .+-|.+..+|+.+......+..... .++...+++..|....++
T Consensus 332 ll~~l~~~l~~~l~~~~~~~~~~~~~~~~er~~iarelhd~i~~~L~~l~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~ 411 (569)
T PRK10600 332 LVDTLVEQLTATLALERQQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNA 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 888888888776655443332222 2222333333 2333355666777666555543221 122334455555555444
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCc
Q 007012 357 LRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPP 436 (621)
Q Consensus 357 L~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~pp 436 (621)
+...+.++...
T Consensus 412 ~~~~lr~ll~~--------------------------------------------------------------------- 422 (569)
T PRK10600 412 SWRQLRELLTT--------------------------------------------------------------------- 422 (569)
T ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Confidence 44444444110
Q ss_pred cccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEE-cHHHHHHHHHHHHHHHHhhcCCCCeEEE
Q 007012 437 LALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAV-EEPALRQALSNLIEGALMRTQVGGKVEI 515 (621)
Q Consensus 437 L~la~~e~~~~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~-D~~~L~qVL~NLL~NAlk~t~~gg~I~I 515 (621)
.+ .....+++.+.+..++..+.... +..+.+.....+..+.. +...+.+|+.|+|.||+||++. +.|.|
T Consensus 423 ---~r---~~~~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~~il~ell~NA~kha~a-~~i~V 492 (569)
T PRK10600 423 ---FR---LQLTEPGLRPALEASCEEFSARF---GFPVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHAQA-SEVVV 492 (569)
T ss_pred ---cC---cCcccCCHHHHHHHHHHHHHHHh---CCeEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCC-CeEEE
Confidence 00 01234678889999888887544 34455544222222222 3456899999999999999976 67888
Q ss_pred EEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCC
Q 007012 516 VSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALG 595 (621)
Q Consensus 516 ~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g 595 (621)
.+. ..++.+.|.|.|+|+||+++. . .+.|+||+||+++++.|||+|.+.+.+ +
T Consensus 493 ~~~-~~~~~~~l~V~D~G~Gi~~~~------~--------------~~~glGL~i~~~~~~~lgG~l~i~s~~------~ 545 (569)
T PRK10600 493 TVA-QNQNQVKLSVQDNGCGVPENA------E--------------RSNHYGLIIMRDRAQSLRGDCRVRRRE------S 545 (569)
T ss_pred EEE-EcCCEEEEEEEECCCCCCccc------c--------------CCCCccHHHHHHHHHHcCCEEEEEECC------C
Confidence 884 456789999999999998540 0 177999999999999999999999987 6
Q ss_pred CCeeEEEEEecCCCCCCCCCC
Q 007012 596 SGGTRVELWLPSPAPLSDLNG 616 (621)
Q Consensus 596 ~~Gt~f~l~LP~~~~~~~~~~ 616 (621)
. ||+|+|.||......+..+
T Consensus 546 ~-Gt~v~i~lp~~~~~~~~~~ 565 (569)
T PRK10600 546 G-GTEVVVTFIPEKTFTDVQG 565 (569)
T ss_pred C-CEEEEEEEecCCCccccCC
Confidence 4 9999999999765555443
No 44
>PRK13559 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-17 Score=178.14 Aligned_cols=185 Identities=11% Similarity=0.121 Sum_probs=133.3
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~ 387 (621)
+.+++..++|++||||+.|.++..++.. .....++++.|.....+|..+++++.+
T Consensus 170 ~~~l~~~l~H~~~n~L~~i~~~~~l~~~----~~~~~~~~~~i~~~~~~l~~~~~~ll~--------------------- 224 (361)
T PRK13559 170 ERRLAREVDHRSKNVFAVVDSIVRLTGR----ADDPSLYAAAIQERVQALARAHETLLD--------------------- 224 (361)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhcc----CCCHHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 4567888999999999999999998752 122334555555555555444433310
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 007012 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (621)
Q Consensus 388 ~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a 467 (621)
. ....++++.++++.++..+..
T Consensus 225 ---------------------------------------------------~-----~~~~~v~l~~~~~~~~~~~~~-- 246 (361)
T PRK13559 225 ---------------------------------------------------E-----RGWETVEVEELIRAQVAPYAP-- 246 (361)
T ss_pred ---------------------------------------------------c-----CCcCcccHHHHHHHHHHhhcC--
Confidence 0 124678999999999887753
Q ss_pred hhcCCeEEEEecCCceEEEEcH-HHHHHHHHHHHHHHHhh---cCCCCeEEEEEE-EecCCeEEEEEEeCCCCCCCCCcc
Q 007012 468 HMQQRQVELSELSQSLLVAVEE-PALRQALSNLIEGALMR---TQVGGKVEIVSA-AAPAGDALVVIDDDGPDMHYMMHS 542 (621)
Q Consensus 468 ~~~~i~l~l~~~~~~~~V~~D~-~~L~qVL~NLL~NAlk~---t~~gg~I~I~~~-~~~~~~v~I~V~D~G~GI~~e~~i 542 (621)
.+..+.+.. ....+..+. ..|.+||.||+.||+|| ++.++.|.|.+. ...++.+.|.|.|+|.|++++
T Consensus 247 --~~~~i~~~~--~~~~~~~~~~~~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~--- 319 (361)
T PRK13559 247 --RATRVAFEG--PGIRLGAASVQPLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK--- 319 (361)
T ss_pred --CCceEEEEC--CCeeeCHHHHHHHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC---
Confidence 245555543 223333332 46999999999999999 566789999883 234567999999999987742
Q ss_pred cCCccccccccccccCCCCCCccchHHHHHHHHHH-cCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLES-YGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 543 Fe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~-~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
. .|+|+||.||+.++++ |||++++.+.+ .|++|+|+||..
T Consensus 320 ----~--------------~~~g~Gl~i~~~~v~~~~gG~i~~~~~~--------~G~~~~l~~P~~ 360 (361)
T PRK13559 320 ----L--------------AKRGFGTVIIGAMVESQLNGQLEKTWSD--------DGLLARIEIPSR 360 (361)
T ss_pred ----C--------------CCCCcHHHHHHHHHHHHcCCeEEEEEcC--------CeEEEEEEEeCC
Confidence 1 1889999999999987 99999998854 599999999964
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.78 E-value=4.2e-17 Score=176.83 Aligned_cols=131 Identities=22% Similarity=0.220 Sum_probs=107.7
Q ss_pred HHHHHhhcCCeEEEEecCCc--eEEEEcHHHHHHHHHHHHHHHHhhcC---CCCeEEEEEEEecCCeEEEEEEeCCCCCC
Q 007012 463 VRPLAHMQQRQVELSELSQS--LLVAVEEPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMH 537 (621)
Q Consensus 463 ~~~~a~~~~i~l~l~~~~~~--~~V~~D~~~L~qVL~NLL~NAlk~t~---~gg~I~I~~~~~~~~~v~I~V~D~G~GI~ 537 (621)
-...+++.|+.+.++..... ..-..+...+--|+.|||+||+...- +++.|.+.+. ..++.+.|+|.|+|+|||
T Consensus 397 K~~rArElgv~l~Id~~S~l~~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~-~~~~~lvieV~D~G~GI~ 475 (537)
T COG3290 397 KISRARELGVSLIIDPNSQLPQLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS-DRGDELVIEVADTGPGIP 475 (537)
T ss_pred HHHHHHHcCceEEEcCCCcCCCCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEE-ecCCEEEEEEeCCCCCCC
Confidence 34455678899988763322 23566888999999999999999865 5578999994 577889999999999999
Q ss_pred CC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 538 YM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 538 ~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
++ +++|+..|+... +.+.|+||++||++++.+||.|++++.. + .||+|.+++|....
T Consensus 476 ~~~~~~iFe~G~Stk~---------~~~rGiGL~Lvkq~V~~~~G~I~~~s~~------~-~Gt~F~i~iP~~~~ 534 (537)
T COG3290 476 PEVRDKIFEKGVSTKN---------TGGRGIGLYLVKQLVERLGGSIEVESEK------G-QGTRFSIYIPKVKE 534 (537)
T ss_pred hHHHHHHHhcCccccC---------CCCCchhHHHHHHHHHHcCceEEEeeCC------C-CceEEEEECCCCcc
Confidence 99 999999885432 1289999999999999999999999976 5 49999999998753
No 46
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.76 E-value=8.6e-16 Score=173.88 Aligned_cols=131 Identities=22% Similarity=0.331 Sum_probs=101.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEec-CCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEE
Q 007012 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (621)
Q Consensus 448 ~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~ 526 (621)
.++++.+.+..++..+.... +..+.+... +.......+...+.|++.|++.||+||++. +.|.|.+....++.+.
T Consensus 430 ~~~~l~~~l~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~qv~~nll~NA~k~~~~-~~i~i~~~~~~~~~~~ 505 (565)
T PRK10935 430 QEANLGSALEEMLDQLRNQT---DAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHANA-SEIAVSCVTNPDGEHT 505 (565)
T ss_pred CCCCHHHHHHHHHHHHHHhh---CCeEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEEEEEcCCCEEE
Confidence 46789999999999887543 344444432 222223334556899999999999999875 6788888544357799
Q ss_pred EEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 527 VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 527 I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
|.|.|+|+||++. .. .|+|+||+||+++++.|||+|++.|.+ +. ||+|++.||
T Consensus 506 i~V~D~G~Gi~~~-------~~-------------~~~glGL~i~~~iv~~~~G~i~v~s~~------~~-Gt~~~i~lP 558 (565)
T PRK10935 506 VSIRDDGIGIGEL-------KE-------------PEGHYGLNIMQERAERLGGTLTISQPP------GG-GTTVSLTFP 558 (565)
T ss_pred EEEEECCcCcCCC-------CC-------------CCCCcCHHHHHHHHHHcCCEEEEEECC------CC-cEEEEEEEC
Confidence 9999999999953 00 178999999999999999999999987 64 999999999
Q ss_pred CCC
Q 007012 607 SPA 609 (621)
Q Consensus 607 ~~~ 609 (621)
...
T Consensus 559 ~~~ 561 (565)
T PRK10935 559 SQQ 561 (565)
T ss_pred CCC
Confidence 865
No 47
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.75 E-value=6.8e-18 Score=150.28 Aligned_cols=108 Identities=28% Similarity=0.366 Sum_probs=94.9
Q ss_pred EcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCc
Q 007012 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNF 564 (621)
Q Consensus 487 ~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~Gt 564 (621)
+|+..|.+|+.||++||++|++.++.|.|.+. ..++.+.|.|+|+|.||+++ +++|.+|++...... . ..|+
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~I~i~~~-~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~-~----~~g~ 74 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGKIDITIE-EDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSET-S----ISGH 74 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSEEEEEEE-EETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSG-G----SSSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCEEEEEEE-EecCeEEEEEEeccccccccccccchhhccccccccc-c----cCCC
Confidence 68999999999999999999998899999995 45588999999999999998 999999997754211 1 1389
Q ss_pred cchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 565 GLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
|+||++|+.+++.|+|++++.+.. + +||+|+++||.
T Consensus 75 GlGL~~~~~~~~~~~g~l~~~~~~------~-~gt~v~~~~p~ 110 (111)
T PF02518_consen 75 GLGLYIVKQIAERHGGELTIESSE------G-GGTTVTFTLPL 110 (111)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEET------T-TEEEEEEEEEG
T ss_pred ChHHHHHHHHHHHCCCEEEEEEcC------C-CcEEEEEEEEC
Confidence 999999999999999999999986 5 59999999996
No 48
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.62 E-value=1.9e-14 Score=164.41 Aligned_cols=145 Identities=21% Similarity=0.275 Sum_probs=113.7
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHH---HHHHHHHHHhhc------------CCCCeEE
Q 007012 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA---LSNLIEGALMRT------------QVGGKVE 514 (621)
Q Consensus 450 v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qV---L~NLL~NAlk~t------------~~gg~I~ 514 (621)
+.+..++...-..++..+...+..+++..... .+..|+..+.++ |.||+.||++|+ +.+|.|.
T Consensus 343 ~p~~~~~~~~~rlvrdla~~~gk~v~l~~~g~--~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~ 420 (670)
T PRK10547 343 MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS--STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLI 420 (670)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcEEEEEeCC--ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCCCCCCceE
Confidence 45666777776777777766677777766333 367899999988 679999999996 4567899
Q ss_pred EEEEEecCCeEEEEEEeCCCCCCCC-----------------------CcccCCccccccccccccCCCCCCccchHHHH
Q 007012 515 IVSAAAPAGDALVVIDDDGPDMHYM-----------------------MHSLTPFGSELFSENMVEDNMTWNFVAGLTVA 571 (621)
Q Consensus 515 I~~~~~~~~~v~I~V~D~G~GI~~e-----------------------~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIv 571 (621)
|.+. ..++.+.|.|.|+|.||+.+ ..+|.|||+....... ..|.|+||+||
T Consensus 421 l~a~-~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~~~~-----~sGrGvGL~iV 494 (670)
T PRK10547 421 LSAE-HQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQVTD-----VSGRGVGMDVV 494 (670)
T ss_pred EEEE-EcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCccccccccc-----CCCCchhHHHH
Confidence 9985 45678999999999999974 2589998755321111 13999999999
Q ss_pred HHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 572 RELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 572 r~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
|++++.|||+|++.|.+ |. ||+|+|.||..-
T Consensus 495 k~~ve~lgG~I~v~S~~------g~-Gt~f~i~LPltl 525 (670)
T PRK10547 495 KRNIQEMGGHVEIQSKQ------GK-GTTIRILLPLTL 525 (670)
T ss_pred HHHHHHcCCEEEEEecC------CC-cEEEEEEEechh
Confidence 99999999999999987 75 999999999864
No 49
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.45 E-value=6.2e-11 Score=128.35 Aligned_cols=230 Identities=17% Similarity=0.277 Sum_probs=150.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHH-HHhHHHHHHHHHHHHHhhcCCC--cchHHHHH
Q 007012 273 FSADQRLNAINICRSLAMAYVMDQKSMLLQQ-SSWQNNARMSNLVEQ-IRGPLSSIQTLSKMLSLHMKRS--EISYDIVE 348 (621)
Q Consensus 273 f~~e~r~~~~~ia~~lala~~l~qr~~~lqq-~~~q~~~~la~lsHE-LRtPLtaI~~~~~lL~~~l~~~--~~~~~~~e 348 (621)
+.++++..+.+++..++.+..+++.++..+| ...+++..++.=.|| |-.-|+-++.-..+|.....++ +..++++.
T Consensus 336 l~~~d~~Ll~tl~~~L~rtL~~~~~q~~~qQLllmEERatIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~ 415 (574)
T COG3850 336 LPEDDQQLLDTLVQQLGRTLALNKQQEQQQQLLLMEERATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIA 415 (574)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccchHHHHHHHH
Confidence 4456777777888888888777766555544 445556666665665 4555666666666676655532 22222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCcc
Q 007012 349 DIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAK 428 (621)
Q Consensus 349 ~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~ 428 (621)
.|... |.+--.++.+. .-+|.
T Consensus 416 ~~r~~---Ln~~Y~QLREL----------------------------------LtTFR---------------------- 436 (574)
T COG3850 416 QIRQG---LNDAYRQLREL----------------------------------LTTFR---------------------- 436 (574)
T ss_pred HHHHH---HHHHHHHHHHH----------------------------------HHHHH----------------------
Confidence 22211 11111222111 00111
Q ss_pred ccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcH-HHHHHHHHHHHHHHHhhc
Q 007012 429 DIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE-PALRQALSNLIEGALMRT 507 (621)
Q Consensus 429 d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~-~~L~qVL~NLL~NAlk~t 507 (621)
| +.+.-++..-++.+++.|.. +.++++++++...+..+..+. -.+-||+..-+.||+||+
T Consensus 437 --------l--------tL~e~~L~~AL~~~~~~f~~---qtg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa 497 (574)
T COG3850 437 --------L--------TLQEAELPPALEQMLAEFSN---QTGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHA 497 (574)
T ss_pred --------H--------hcccCchHHHHHHHHHHHHh---ccCCeEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 12334677888888888874 457888887633333333332 357899999999999999
Q ss_pred CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeC
Q 007012 508 QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISP 587 (621)
Q Consensus 508 ~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~ 587 (621)
.. ..|.|.+.. .++.+.+.|.|||+||+.. -+| .| ..||.|.++-++.+||.+++++.
T Consensus 498 ~A-s~i~V~~~~-~~g~~~~~VeDnG~Gi~~~---~e~----------------~g-HyGL~IM~ERA~~L~~~L~i~~~ 555 (574)
T COG3850 498 QA-SEIKVTVSQ-NDGQVTLTVEDNGVGIDEA---AEP----------------SG-HYGLNIMRERAQRLGGQLRIRRR 555 (574)
T ss_pred cc-CeEEEEEEe-cCCeEEEEEeeCCcCCCCc---cCC----------------CC-CcchHHHHHHHHHhcCeEEEeec
Confidence 86 789999954 4488999999999999953 011 03 56999999999999999999998
Q ss_pred CCccCCCCCCeeEEEEEecCCC
Q 007012 588 WKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 588 ~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+ + +||.+.++||...
T Consensus 556 ~------~-gGT~V~ltf~~~~ 570 (574)
T COG3850 556 E------G-GGTEVSLTFPPEE 570 (574)
T ss_pred C------C-CCeEEEEEecccc
Confidence 8 6 5999999999654
No 50
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.37 E-value=3.6e-11 Score=138.31 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=113.3
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHH---HHHHHHHHHhhc------------CCCCeE
Q 007012 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQA---LSNLIEGALMRT------------QVGGKV 513 (621)
Q Consensus 449 ~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qV---L~NLL~NAlk~t------------~~gg~I 513 (621)
.+.+..++...-..++..+.+-+.++++.+... ....|+..|.++ |.+||.||+.|. ++.|.|
T Consensus 389 MvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~--~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I 466 (716)
T COG0643 389 MVPFEQVFSRFPRMVRDLARKLGKQVELVIEGE--DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTI 466 (716)
T ss_pred ceeHHHHHhhccHHHHHHHHHhCCeeEEEEecC--CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceE
Confidence 355667777666666777766677777766322 356788877776 789999999985 455799
Q ss_pred EEEEEEecCCeEEEEEEeCCCCCCC------------------------C--CcccCCccccccccccccCCCCCCccch
Q 007012 514 EIVSAAAPAGDALVVIDDDGPDMHY------------------------M--MHSLTPFGSELFSENMVEDNMTWNFVAG 567 (621)
Q Consensus 514 ~I~~~~~~~~~v~I~V~D~G~GI~~------------------------e--~~iFe~F~~~~~s~~~~~~~~~~GtGLG 567 (621)
+++.. ..++.+.|.|.|+|.||+. + .-||.|.|++...-.. -+|.|.|
T Consensus 467 ~L~A~-~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~Vtd-----vSGRGVG 540 (716)
T COG0643 467 TLSAY-HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVTD-----VSGRGVG 540 (716)
T ss_pred EEEEE-cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcchhhhc-----ccCCccC
Confidence 99995 5778999999999999962 1 5689998855322222 1399999
Q ss_pred HHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 568 LTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 568 LaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
|-+||+-++++||+|.|.|.+ |+ ||+|+|.||++-
T Consensus 541 MDVVk~~I~~LgG~I~V~S~~------G~-GT~Fti~LPLTL 575 (716)
T COG0643 541 MDVVKTNIEQLGGSISVSSEP------GK-GTTFTIRLPLTL 575 (716)
T ss_pred HHHHHHHHHHcCCEEEEEecC------CC-CeEEEEecCcHH
Confidence 999999999999999999998 86 999999999863
No 51
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.35 E-value=1.2e-11 Score=107.13 Aligned_cols=108 Identities=27% Similarity=0.363 Sum_probs=88.7
Q ss_pred EcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCc
Q 007012 487 VEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNF 564 (621)
Q Consensus 487 ~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~Gt 564 (621)
+|...|.+++.|+++||++|...++.|.|.+. ..++.+.|.|.|+|.|++++ ..+|.+++.... .... ..+.
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~~v~i~~~-~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~-~~~~----~~~~ 74 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGGRITVTLE-RDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG-RSRK----IGGT 74 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE-EcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-CCCC----CCcc
Confidence 36788999999999999999988788999884 45567999999999999987 788888775432 1111 1278
Q ss_pred cchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 565 GLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
|+||++|+.+++.|+|.+.+.+.. + .|++|++.+|.
T Consensus 75 g~gl~~~~~~~~~~~g~~~~~~~~------~-~g~~~~~~~~~ 110 (111)
T smart00387 75 GLGLSIVKKLVELHGGEISVESEP------G-GGTTFTITLPL 110 (111)
T ss_pred cccHHHHHHHHHHcCCEEEEEecC------C-CcEEEEEEeeC
Confidence 999999999999999999998764 4 49999999996
No 52
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.35 E-value=9e-10 Score=110.61 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=99.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcH-HHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCC
Q 007012 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE-PALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAG 523 (621)
Q Consensus 448 ~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~-~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~ 523 (621)
..++...+++.+...+.+.+....+.+.... .+.+.+..|. ..|.-|+..|+.||+||+-. +|.|.|.+....++
T Consensus 79 ~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~-~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~ 157 (221)
T COG3920 79 DTWDFASYLELLASNLFPSYGGKDIRLILDS-GPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDG 157 (221)
T ss_pred ceEcHHHHHHHHHHHHHHhcCCCCceEEEec-CCceEECchhhHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCC
Confidence 4578888888888888776423445554433 2224444443 45899999999999999754 57999998665544
Q ss_pred -eEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHH-HHcCCEEEEEeCCCccCCCCCCeeEE
Q 007012 524 -DALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELL-ESYGCVVRVISPWKTDAALGSGGTRV 601 (621)
Q Consensus 524 -~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lv-e~~GG~I~v~S~~~~~~~~g~~Gt~f 601 (621)
...+.|||+|.|+|.+ .++. ..|+|+.+++.++ ++.||.+.... . +||+|
T Consensus 158 ~~~~l~v~deg~G~~~~----~~~~---------------~~g~G~~Lv~~lv~~q~~g~~~~~~--------~-~Gt~~ 209 (221)
T COG3920 158 GRFLLTVWDEGGGPPVE----APLS---------------RGGFGLQLVERLVPEQLGGELEDER--------P-DGTEF 209 (221)
T ss_pred CeEEEEEEECCCCCCCC----CCCC---------------CCCcHHHHHHHHHHHHcCCeEEEEc--------C-CCEEE
Confidence 4899999999999964 1111 5689999999999 89999999987 3 39999
Q ss_pred EEEecCCC
Q 007012 602 ELWLPSPA 609 (621)
Q Consensus 602 ~l~LP~~~ 609 (621)
+|+||...
T Consensus 210 ~i~~~~~~ 217 (221)
T COG3920 210 RLRFPLSE 217 (221)
T ss_pred EEEEeccc
Confidence 99999865
No 53
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.29 E-value=9.7e-10 Score=113.66 Aligned_cols=127 Identities=19% Similarity=0.192 Sum_probs=97.2
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-ceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeE
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~-~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v 525 (621)
.....+.+.+..+++.+.- .++|+...++.... ...-..-+.-+.++...++.|-+||+.+ ..|+|... .+++.+
T Consensus 367 LDdL~l~qai~~l~~Em~~--~ergihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KHA~A-S~V~i~l~-~~~e~l 442 (497)
T COG3851 367 LDDLTLEQAIRSLLREMEL--EERGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKHADA-SAVTIQLW-QQDERL 442 (497)
T ss_pred cccccHHHHHHHHHHHhhh--hhcCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhcccc-ceEEEEEe-eCCcEE
Confidence 3456788999999998875 55888887764211 1111112235788999999999999987 78999884 455669
Q ss_pred EEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEe
Q 007012 526 LVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605 (621)
Q Consensus 526 ~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~L 605 (621)
.++|+|||.|+|.. . +-.|+||.-.++-+...||++++.+ . .||++.+.+
T Consensus 443 ~Lei~DdG~Gl~~~-------~--------------~v~G~Gl~GmrERVsaLGG~ltlss--------q-~GTrviVnL 492 (497)
T COG3851 443 MLEIEDDGSGLPPG-------S--------------GVQGFGLTGMRERVSALGGTLTLSS--------Q-HGTRVIVNL 492 (497)
T ss_pred EEEEecCCcCCCCC-------C--------------CccCcCcchHHHHHHHhCCceEEEe--------c-cCcEEEEec
Confidence 99999999999953 0 1467889999999999999999987 3 499999999
Q ss_pred cC
Q 007012 606 PS 607 (621)
Q Consensus 606 P~ 607 (621)
|.
T Consensus 493 Pq 494 (497)
T COG3851 493 PQ 494 (497)
T ss_pred ch
Confidence 94
No 54
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.27 E-value=1.4e-11 Score=136.72 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=87.3
Q ss_pred EEEcHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEe--cCCeEEEEEEeCCCCCCCC--CcccCCcccccccccccc
Q 007012 485 VAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAA--PAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVE 557 (621)
Q Consensus 485 V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~--~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~ 557 (621)
...+...|.+++.|||+||++|++.++ .|.|.+... +++.+.|.|.|||+||+++ +++|.+|+.+.......
T Consensus 30 f~~p~~~L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~- 108 (535)
T PRK04184 30 FDNPARALYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLR- 108 (535)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccc-
Confidence 444568899999999999999997655 677777433 3456899999999999998 89999986553211100
Q ss_pred CCCCCCccchHHHHHHHHHHcCCE-EEEEeCCCccCCCCCCee-EEEEEecCC
Q 007012 558 DNMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGSGGT-RVELWLPSP 608 (621)
Q Consensus 558 ~~~~~GtGLGLaIvr~lve~~GG~-I~v~S~~~~~~~~g~~Gt-~f~l~LP~~ 608 (621)
...+++||||++|+.+++.|+|. +++.|.. +. |+ .|.++||..
T Consensus 109 -~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~------~~-g~~~~~~~l~id 153 (535)
T PRK04184 109 -QSRGQQGIGISAAVLYAQMTTGKPVRVISST------GG-SKKAYYFELKID 153 (535)
T ss_pred -cCCCCCCcchHHHHHHHHHhcCCcEEEEEec------CC-CceEEEEEEEec
Confidence 11237999999999999999886 9999876 53 65 777787643
No 55
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.26 E-value=2.8e-09 Score=114.93 Aligned_cols=124 Identities=23% Similarity=0.217 Sum_probs=92.9
Q ss_pred eHHHHHHHHHHHHHHHHhhcCCeEEEEecCCc-eEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEE
Q 007012 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529 (621)
Q Consensus 451 ~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~-~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V 529 (621)
.+.+-+...++.+.. ..++.+........ ..-..-...+.+++...|.||+||+.+ ..|.|.+. ..++.+.+.|
T Consensus 241 ~l~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN~~rHa~A-~~v~V~l~-~~~~~l~l~V 315 (365)
T COG4585 241 GLVEALRALLADFEE---RTGITVDLSLGSELERLPPEAEDALFRIVQEALTNAIRHAQA-TEVRVTLE-RTDDELRLEV 315 (365)
T ss_pred hHHHHHHHHHHHHHh---hcCeEEEEecCcccccCChhHHHHHHHHHHHHHHHHHhccCC-ceEEEEEE-EcCCEEEEEE
Confidence 355555555555553 34455555442211 122344667999999999999999987 77888885 4567799999
Q ss_pred EeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 530 DDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 530 ~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
.|||.|++.+ .. +.|+||.-.|+-++..||++++.|.+ |. ||++++++|.
T Consensus 316 ~DnG~Gf~~~----~~-----------------~~~~GL~~mreRv~~lgG~l~i~S~~------g~-Gt~i~i~lPl 365 (365)
T COG4585 316 IDNGVGFDPD----KE-----------------GGGFGLLGMRERVEALGGTLTIDSAP------GQ-GTTVTITLPL 365 (365)
T ss_pred EECCcCCCcc----cc-----------------CCCcchhhHHHHHHHcCCEEEEEecC------CC-ceEEEEecCC
Confidence 9999999854 10 24679999999999999999999988 75 9999999995
No 56
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.16 E-value=2.9e-10 Score=96.68 Aligned_cols=100 Identities=27% Similarity=0.383 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhcCC-CCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchH
Q 007012 492 LRQALSNLIEGALMRTQV-GGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGL 568 (621)
Q Consensus 492 L~qVL~NLL~NAlk~t~~-gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGL 568 (621)
|.+++.++++||++|... ++.|.|.+. ..++.+.|.|.|+|.|+++. ...|.+|... ..... ..+.|+||
T Consensus 1 l~~~~~~ll~Na~~~~~~~~~~v~i~~~-~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--~~~~~----~~~~g~gl 73 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGGGRITISVE-RDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--SRSRK----GGGTGLGL 73 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEEEE-ecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC--CCCCC----CCccccCH
Confidence 467899999999999885 578888884 45567999999999999877 6666665111 11111 12889999
Q ss_pred HHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEe
Q 007012 569 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605 (621)
Q Consensus 569 aIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~L 605 (621)
++++++++.|||.+++.+.. + +|++|++.+
T Consensus 74 ~~~~~~~~~~~g~~~~~~~~------~-~g~~~~~~~ 103 (103)
T cd00075 74 SIVKKLVELHGGRIEVESEP------G-GGTTFTITL 103 (103)
T ss_pred HHHHHHHHHcCCEEEEEeCC------C-CcEEEEEEC
Confidence 99999999999999998765 4 489988764
No 57
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.16 E-value=2.4e-10 Score=129.55 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=80.9
Q ss_pred cCCeEEEEecCCceEE--EEcHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEEeCCCCCCCC--Ccc
Q 007012 470 QQRQVELSELSQSLLV--AVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYM--MHS 542 (621)
Q Consensus 470 ~~i~l~l~~~~~~~~V--~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~i 542 (621)
+.+.+..-+......+ ..|...|.+++.|||+||++|+..++ .|.|.+. ..+..+.|.|.|||+||+++ +++
T Consensus 23 ~~iS~aEfF~kN~~~lgfD~d~r~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie-~~g~~v~I~VeDNG~GIp~EdLp~I 101 (795)
T PRK14868 23 REISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDATEEAGILPDIYVEIE-EVGDYYRLVVEDNGPGITKEQIPKV 101 (795)
T ss_pred cccceeeecccCcceeeccCCHHHHHHHHHHHHHHHHHhCcccCCCceEEEEEE-ECCCEEEEEEEEcCCCCCHHHHHHH
Confidence 4455544332222233 34577899999999999999998765 6888884 45567899999999999998 999
Q ss_pred cCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCC
Q 007012 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPW 588 (621)
Q Consensus 543 Fe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~ 588 (621)
|++|+++..-.......+..|.|||++++...+ .+||.+.+.|..
T Consensus 102 Ferf~~tSKf~~~~~srG~rG~GLglai~~sql-t~GgpI~I~S~~ 146 (795)
T PRK14868 102 FGKLLYGSRFHAREQSRGQQGIGISAAVLYSQL-TSGKPAKITSRT 146 (795)
T ss_pred hhhhcccccccccccCCCCCceehHHHHHHHHH-cCCCcEEEEeCC
Confidence 999875431111101111236777777777666 368999999976
No 58
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.14 E-value=4.7e-10 Score=103.78 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcC---CCCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCc
Q 007012 488 EEPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNF 564 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~---~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~Gt 564 (621)
+...+..++.|++.||++|+. .++.|.|.+. ..++.+.|.|.|+|+||+...++|++|+..... . .+.
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~-~~~~~~~i~I~D~G~gi~~~~~~~~~~~~~~~~----~----~~~ 106 (137)
T TIGR01925 36 ELTDIKTAVSEAVTNAIIHGYEENCEGVVYISAT-IEDHEVYITVRDEGIGIENLEEAREPLYTSKPE----L----ERS 106 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEE-EeCCEEEEEEEEcCCCcCchhHhhCCCcccCCC----C----CCC
Confidence 456799999999999999863 3568888884 355789999999999998447889998854311 1 278
Q ss_pred cchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEe
Q 007012 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605 (621)
Q Consensus 565 GLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~L 605 (621)
|+||++++++ .+.+++.+.+ + .|++|+++.
T Consensus 107 GlGL~lv~~~----~~~l~~~~~~------~-~Gt~v~i~~ 136 (137)
T TIGR01925 107 GMGFTVMENF----MDDVSVDSEK------E-KGTKIIMKK 136 (137)
T ss_pred cccHHHHHHh----CCcEEEEECC------C-CCeEEEEEe
Confidence 9999998874 5789998876 5 499998863
No 59
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.09 E-value=4.8e-10 Score=123.45 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=80.8
Q ss_pred EEEcHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCC
Q 007012 485 VAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDN 559 (621)
Q Consensus 485 V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~ 559 (621)
+..+...|.+++.||++||++|+..++ .|.|.+.....+.+.|.|.|||+||+++ +++|++|+++....... .
T Consensus 22 f~~~~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~--~ 99 (488)
T TIGR01052 22 YSGKIRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRII--Q 99 (488)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccccc--c
Confidence 556888999999999999999987655 6888774333346789999999999998 89999987664322111 1
Q ss_pred CCCCccchHHHHHHHHHHcCCE-EEEEeCC
Q 007012 560 MTWNFVAGLTVARELLESYGCV-VRVISPW 588 (621)
Q Consensus 560 ~~~GtGLGLaIvr~lve~~GG~-I~v~S~~ 588 (621)
..++.|+||++++.+++.|+|. +++.+..
T Consensus 100 s~G~~GlGLs~~~~isq~~~G~~i~V~S~~ 129 (488)
T TIGR01052 100 SRGQQGIGISGAVLYSQMTTGKPVKVISST 129 (488)
T ss_pred cCCCccEehhHHHHHHHHcCCceEEEEEec
Confidence 1248999999999999999998 8998865
No 60
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.03 E-value=1.6e-07 Score=100.75 Aligned_cols=132 Identities=18% Similarity=0.113 Sum_probs=91.1
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhc--CCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhc----CCCCeEEEEEEEe
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQ--QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT----QVGGKVEIVSAAA 520 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~--~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t----~~gg~I~I~~~~~ 520 (621)
.+.|+|.+-++.+-+.++-.-.+- ..++.+++++....+...+- ++.=|++||+||. ...+.|.|.+. .
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~f----ilQPLVENAIKHG~~~~~~~g~V~I~V~-~ 488 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPSF----ILQPLVENAIKHGISQLKDTGRVTISVE-K 488 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhccCchh----hhhHHHHHHHHhcccchhcCCceEEEEE-E
Confidence 356888888888776664332222 23344444333333444443 4455778888875 34578999994 4
Q ss_pred cCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCC---EEEEEeCCCccCCCCCC
Q 007012 521 PAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGC---VVRVISPWKTDAALGSG 597 (621)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG---~I~v~S~~~~~~~~g~~ 597 (621)
.+..+.+.|+|||.|++++ . . .|.|+||+.+++-++.+=| -+.+.+.+ . .
T Consensus 489 ~d~~l~i~VeDng~li~p~-------~-~------------~g~giGL~nv~~RLk~lyG~~~gl~i~~~~------q-~ 541 (557)
T COG3275 489 EDADLRIEVEDNGGLIQPD-------E-E------------DGTGIGLANVHKRLKLLYGDDEGLHIESLE------Q-A 541 (557)
T ss_pred eCCeEEEEEecCCCCcCCC-------C-C------------CCCChHHHHHHHHHHHhcCccccceEEecc------C-C
Confidence 5677999999999999853 0 0 1899999999999987766 67787766 4 3
Q ss_pred eeEEEEEecCCCC
Q 007012 598 GTRVELWLPSPAP 610 (621)
Q Consensus 598 Gt~f~l~LP~~~~ 610 (621)
||++.+++|....
T Consensus 542 gTri~f~lp~~~~ 554 (557)
T COG3275 542 GTRIIFRLPLQRT 554 (557)
T ss_pred CcEEEEEecCccc
Confidence 9999999998653
No 61
>PRK03660 anti-sigma F factor; Provisional
Probab=99.02 E-value=3.7e-09 Score=98.75 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=78.9
Q ss_pred cHHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCc
Q 007012 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNF 564 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~Gt 564 (621)
+...+.+++.|++.||++|+.. ++.|.|.+. ..++.+.|.|.|+|.||++....|++|++.... . .+.
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~-~~~~~l~i~I~D~G~g~~~~~~~~~~~~~~~~~----~----~~~ 106 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVE-IEEEELEITVRDEGKGIEDIEEAMQPLYTTKPE----L----ERS 106 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEE-ECCCEEEEEEEEccCCCChHHHhhCCCcccCCC----C----CCc
Confidence 4567899999999999998643 257888884 455789999999999998545778888754211 1 178
Q ss_pred cchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 565 GLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
|+||+++++ +.+.+++.+.+ + +|++|++.++....
T Consensus 107 GlGL~i~~~----~~~~i~~~~~~------~-~Gt~~~i~~~~~~~ 141 (146)
T PRK03660 107 GMGFTVMES----FMDEVEVESEP------G-KGTTVRMKKYLKKS 141 (146)
T ss_pred cccHHHHHH----hCCeEEEEecC------C-CcEEEEEEEEeccc
Confidence 999999875 45689998766 5 49999999887664
No 62
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.96 E-value=3.4e-09 Score=120.04 Aligned_cols=111 Identities=10% Similarity=0.107 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCC
Q 007012 489 EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWN 563 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~G 563 (621)
...|.+++.||++||++|...++ .|.|.+.....+.+.|.|.|||+||+++ .++|++|+.+..-.... ...++
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~--qS~G~ 111 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLI--QSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCccccee--ccCCC
Confidence 34566999999999999987543 7888885433456889999999999998 99999988653211100 11237
Q ss_pred ccchHHHHHHHHHHc-CCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 564 FVAGLTVARELLESY-GCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 564 tGLGLaIvr~lve~~-GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
.|+||+++..+.+.+ ||.+.+.|.. + +|++|.+.+|..
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~------g-~G~~f~i~L~i~ 150 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTST------G-DGKIHEMEIKMS 150 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEc------C-CCEEEEEEEEEE
Confidence 899999999999875 6668998876 5 489999998874
No 63
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.81 E-value=1.3e-06 Score=89.96 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=100.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceE-EEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 007012 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLL-VAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (621)
Q Consensus 449 ~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~-V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (621)
..-|...++.+++.++ ...++.+.+.....+.. ...-...|.+|...-+.|-=+|+.. .+|.|.+ ...++.+.+
T Consensus 319 DLGL~aALe~L~~~f~---~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltNIErHa~A-trv~ill-~~~~d~vql 393 (459)
T COG4564 319 DLGLTAALEALLEDFK---ERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTNIERHAGA-TRVTILL-QQMGDMVQL 393 (459)
T ss_pred hhhHHHHHHHHHHHhh---hccCeEEEEEecCCcccCCcHHHHHHHHHHHHHHHHHHhhcCC-eEEEEEe-ccCCcceEE
Confidence 3557777888888877 44677777776433332 2333567999999999999999854 7899999 456788999
Q ss_pred EEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 528 VIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 528 ~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
.|.|||+|++.+ + ... .-.||||.-.|+-+..+||.+.++|.+ .||.+++.||.
T Consensus 394 ~vrDnG~GF~~~----~-------~~~-------~~~GiGLRNMrERma~~GG~~~v~s~p--------~GTel~v~Lp~ 447 (459)
T COG4564 394 MVRDNGVGFSVK----E-------ALQ-------KRHGIGLRNMRERMAHFGGELEVESSP--------QGTELTVLLPL 447 (459)
T ss_pred EEecCCCCccch----h-------hcc-------CccccccccHHHHHHHhCceEEEEecC--------CCcEEEEEecc
Confidence 999999999843 0 000 046999999999999999999999976 59999999998
Q ss_pred CC
Q 007012 608 PA 609 (621)
Q Consensus 608 ~~ 609 (621)
..
T Consensus 448 ~~ 449 (459)
T COG4564 448 DA 449 (459)
T ss_pred hh
Confidence 65
No 64
>PF14501 HATPase_c_5: GHKL domain
Probab=98.80 E-value=9.1e-08 Score=83.92 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCc
Q 007012 488 EEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNF 564 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~Gt 564 (621)
+...|..+|.|||+||++++.. ...|.|.+. ..++.+.|.|.+.-.+-. ..++ . +... ..+.
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~~~~I~i~~~-~~~~~~~i~i~N~~~~~~--~~~~----~----~~~~----~~~~ 66 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYEDKRFISISIR-EENGFLVIIIENSCEKEI--EKLE----S----SSSK----KKGH 66 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEE-ecCCEEEEEEEECCCCcc--cccc----c----cccC----CCCC
Confidence 4567899999999999998654 458899884 466889999999854311 2221 1 1111 1289
Q ss_pred cchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 565 GLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
|+||..+++++++++|.+.+.... +-.+++|.||
T Consensus 67 G~GL~~v~~i~~~y~g~~~~~~~~--------~~f~~~i~ip 100 (100)
T PF14501_consen 67 GIGLKNVKKILEKYNGSLSIESED--------GIFTVKIVIP 100 (100)
T ss_pred CcCHHHHHHHHHHCCCEEEEEEEC--------CEEEEEEEEC
Confidence 999999999999999999998754 3577888877
No 65
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.79 E-value=8.9e-08 Score=91.54 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=73.3
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCC
Q 007012 488 EEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTW 562 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~ 562 (621)
+...+..++.+++.||++|+..+ +.|.|.+. ..++.+.|.|+|+|+||+++ ...|.+|+........ .
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~-~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~~~~------~ 111 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFE-IYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPIEDL------R 111 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEE-EECCEEEEEEEECCcCCChHHhccccCCCCCCCccccc------C
Confidence 34568889999999999998643 57888884 35678999999999999876 5667777644222111 1
Q ss_pred CccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 563 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 563 GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
+.|+||++++.+++. +.+.+ . +|++|++.-..
T Consensus 112 ~~G~GL~li~~l~d~----v~~~~--------~-~G~~v~~~k~~ 143 (161)
T PRK04069 112 EGGLGLFLIETLMDD----VTVYK--------D-SGVTVSMTKYI 143 (161)
T ss_pred CCceeHHHHHHHHHh----EEEEc--------C-CCcEEEEEEEc
Confidence 679999999999986 55654 2 37777765543
No 66
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.66 E-value=4.2e-07 Score=86.75 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCc
Q 007012 490 PALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNF 564 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~Gt 564 (621)
..+..++.+++.||++|+.. ++.|.|.+. ..++.+.|.|+|+|+|++.. ...|.+++........ .+.
T Consensus 41 ~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~-~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~~~~------~~~ 113 (159)
T TIGR01924 41 EDLKIAVSEACTNAVKHAYKEGENGEIGISFH-IYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPIDDL------REG 113 (159)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEE-EeCCEEEEEEEEcccccCchhhccccCCCCCCCCcccC------CCC
Confidence 45888999999999999753 358888885 45678999999999999876 4556554432211111 267
Q ss_pred cchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 565 VAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 565 GLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
|+||+|++++++ .+.+.+. +|+++.+.....
T Consensus 114 G~GL~Li~~L~D----~v~~~~~---------~G~~l~l~k~~~ 144 (159)
T TIGR01924 114 GLGLFLIETLMD----EVEVYED---------SGVTVAMTKYLN 144 (159)
T ss_pred ccCHHHHHHhcc----EEEEEeC---------CCEEEEEEEEEc
Confidence 999999999998 5666652 366766665433
No 67
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=98.63 E-value=8.4e-09 Score=121.32 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=121.2
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-ceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecC---
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPA--- 522 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~-~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~--- 522 (621)
-.+|++..+++.++..+.+.+..++..+....+.. +-.+.+|+..+.||+.|++.||+|++..+ .|.+.+...+.
T Consensus 289 ~~rf~l~~ll~~~~~~~~e~~~~~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~-~i~~~~~~~~~~~~ 367 (786)
T KOG0519|consen 289 AKRFDLRTLLNFVISLLSELSQAKYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAG-HLEESVIAREELSE 367 (786)
T ss_pred eeecchHhhhhhhhhhhHHHhhcCCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccc-eEEEEEEeehhcch
Confidence 45799999999999999999988888887776544 56799999999999999999999998874 44444421000
Q ss_pred --------------------------------------------CeEEEEEEeCCCCCCCC---CcccCCcccccccccc
Q 007012 523 --------------------------------------------GDALVVIDDDGPDMHYM---MHSLTPFGSELFSENM 555 (621)
Q Consensus 523 --------------------------------------------~~v~I~V~D~G~GI~~e---~~iFe~F~~~~~s~~~ 555 (621)
-...+.+.|+|.+|+.. ..+|..|-+...+..+
T Consensus 368 ~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~ 447 (786)
T KOG0519|consen 368 SNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITR 447 (786)
T ss_pred hhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhhhhhHHHHHhcccccccc
Confidence 11246799999999988 3378888877666555
Q ss_pred ccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCCC
Q 007012 556 VEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 611 (621)
Q Consensus 556 ~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~~ 611 (621)
..+ |+|+|+.+++.+++.++|.+.+.+.. .. |++|.+.++.....
T Consensus 448 ~~~----gt~~~~~i~~~l~~l~~~~~~~~~~~------~~-~~t~~~~~~~~~~~ 492 (786)
T KOG0519|consen 448 LYG----GTGLGESIVFSLVELMSGEISDISCI------SL-GKTFSFTLDLLTNL 492 (786)
T ss_pred ccC----CCcccchhhccHHHHHHHHhhhhhhh------cc-CceeeEEEEeccCC
Confidence 444 99999999999999999999998877 54 89999988876544
No 68
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=98.59 E-value=1.7e-07 Score=75.78 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=51.1
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEI-SYDIVEDIMVQGDRLRGTLQELQDA 367 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~-~~~~~e~I~~~~~rL~~ll~~L~~~ 367 (621)
+++|++.++|||||||++|.+++++|......++. .++++..|..+++++.++++++.+.
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~ 62 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLERDSDLDPEQLREYLDRIRSAADRLNELINDLLDF 62 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999983333333 4889999999999999999999664
No 69
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=98.49 E-value=1.5e-06 Score=91.13 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=109.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcC---CeEEEEecC-CceEEEEcHHHHHHHHHHHHHHHHhhcC----CCC----eEEE
Q 007012 448 RPCNVSDVLGDLFEAVRPLAHMQQ---RQVELSELS-QSLLVAVEEPALRQALSNLIEGALMRTQ----VGG----KVEI 515 (621)
Q Consensus 448 ~~v~L~elL~~~l~~~~~~a~~~~---i~l~l~~~~-~~~~V~~D~~~L~qVL~NLL~NAlk~t~----~gg----~I~I 515 (621)
..|++.++|+++.+..+.++...= -.+.+.... ....| .-+..|.-++..|+.||++++- ..+ .|.|
T Consensus 214 ~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V 292 (414)
T KOG0787|consen 214 PRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFTV-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKV 292 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCcccccCcc-ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 459999999999999887765432 223333311 11222 2467899999999999999652 122 4888
Q ss_pred EEEEecCCeEEEEEEeCCCCCCCC--CcccCCcccccccccc-cc-CCCCCCccchHHHHHHHHHHcCCEEEEEeCCCcc
Q 007012 516 VSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENM-VE-DNMTWNFVAGLTVARELLESYGCVVRVISPWKTD 591 (621)
Q Consensus 516 ~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~-~~-~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~ 591 (621)
.+. ..++.+.|.|+|.|-||+.+ +++|.-.|+....... .. ...-.|.|.||.|+|..++..||++.+.|-.
T Consensus 293 ~V~-~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~Sle--- 368 (414)
T KOG0787|consen 293 TVA-KGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLE--- 368 (414)
T ss_pred EEe-cCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeee---
Confidence 874 45567889999999999988 7788876654321111 11 1122599999999999999999999999987
Q ss_pred CCCCCCeeEEEEEecCCC
Q 007012 592 AALGSGGTRVELWLPSPA 609 (621)
Q Consensus 592 ~~~g~~Gt~f~l~LP~~~ 609 (621)
|- ||...|++-...
T Consensus 369 ---G~-GTD~yI~Lk~ls 382 (414)
T KOG0787|consen 369 ---GI-GTDVYIYLKALS 382 (414)
T ss_pred ---cc-ccceEEEeccCC
Confidence 75 999999986654
No 70
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.48 E-value=4.5e-05 Score=85.03 Aligned_cols=97 Identities=25% Similarity=0.264 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhhc----CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCC-ccc
Q 007012 492 LRQALSNLIEGALMRT----QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN-FVA 566 (621)
Q Consensus 492 L~qVL~NLL~NAlk~t----~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~G-tGL 566 (621)
+..++..|++||++|+ .+++.|.|.... .++.+.+.|.|||+||++. +....+ ++. ++ .|+
T Consensus 351 p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~-~~~~i~i~i~Dng~g~~~~---~~~~~~----~~~------~~r~gi 416 (456)
T COG2972 351 PKLVLQPLVENAIEHGIEPKRPGGSIAISAKK-QDDVIQISISDNGPGIDEE---KLEGLS----TKG------ENRSGI 416 (456)
T ss_pred chHHHhHHHHHHHHHhcccCCCCCEEEEEEEE-cCCEEEEEEeeCCCCCChh---HHHHHH----hhc------cCcccc
Confidence 4567888999999987 466799999854 4688999999999999975 111111 111 03 499
Q ss_pred hHHHHHHHHHHcCCE--EEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 567 GLTVARELLESYGCV--VRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 567 GLaIvr~lve~~GG~--I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
||.-++++++.+-|. +.+.+.+ +. ||.+.+.+|...
T Consensus 417 GL~Nv~~rl~~~~g~~~~~i~s~~------~~-gt~v~~~~~~~~ 454 (456)
T COG2972 417 GLSNVKERLKLYFGEPGLSIDSQP------GK-GTFVQIIIPKRE 454 (456)
T ss_pred cHHHHHHHHHHeeCCcceeEeecC------CC-cEEEEEEeehhh
Confidence 999999999998777 5788877 64 999999999754
No 71
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.18 E-value=2e-05 Score=71.40 Aligned_cols=93 Identities=20% Similarity=0.237 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCcc
Q 007012 489 EPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtG 565 (621)
...+..++..++.||++|+..+ +.|.|.+. ...+.+.|.|.|+|+|++.. -........ . .. ....|
T Consensus 29 ~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~-~~~~~l~i~v~D~G~~~d~~--~~~~~~~~~-~--~~----~~~~G 98 (125)
T PF13581_consen 29 RDDLELAVSEALTNAVEHGYPGDPDGPVDVRLE-VDPDRLRISVRDNGPGFDPE--QLPQPDPWE-P--DS----LREGG 98 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEE-EcCCEEEEEEEECCCCCChh--hccCccccc-C--CC----CCCCC
Confidence 4578899999999999998764 57888874 46678999999999998865 101100000 0 00 12789
Q ss_pred chHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEE
Q 007012 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELW 604 (621)
Q Consensus 566 LGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~ 604 (621)
+||.|++.++..+ .+ +. + +|+++++.
T Consensus 99 ~Gl~li~~l~D~~----~~-~~-------~-~gn~v~l~ 124 (125)
T PF13581_consen 99 RGLFLIRSLMDEV----DY-RE-------D-GGNTVTLR 124 (125)
T ss_pred cCHHHHHHHHcEE----EE-EC-------C-CeEEEEEE
Confidence 9999999999876 33 32 3 59998875
No 72
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=97.81 E-value=6.2e-05 Score=80.88 Aligned_cols=98 Identities=15% Similarity=0.128 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCC
Q 007012 489 EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWN 563 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~G 563 (621)
...|.+++..|++|++.++...| .|.|.+.+.+.+.+.+.|.|||+|||.+ +++|-++.-+..-..... ..+-
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Q--sRGq 111 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQ--SRGQ 111 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhh--cccc
Confidence 46799999999999999998766 6888886666788999999999999998 888877543321111111 1235
Q ss_pred ccchHHHHHHHHHHcCCE-EEEEeCC
Q 007012 564 FVAGLTVARELLESYGCV-VRVISPW 588 (621)
Q Consensus 564 tGLGLaIvr~lve~~GG~-I~v~S~~ 588 (621)
.|||.+-|--..+..-|+ +.|.|..
T Consensus 112 qGiGis~avLysQmTtGkPv~V~s~T 137 (538)
T COG1389 112 QGIGISAAVLYSQMTTGKPVRVISST 137 (538)
T ss_pred ccccHHHHHHHHHhcCCCceEEEecC
Confidence 789998888888877665 6666654
No 73
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=97.78 E-value=8.1e-05 Score=58.04 Aligned_cols=58 Identities=26% Similarity=0.398 Sum_probs=46.9
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDA 367 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~ 367 (621)
.++++.++||+||||++|.++++++... ..++....+++.+..+.+++..+++++.++
T Consensus 3 ~~~~~~i~Hel~~pl~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 60 (66)
T smart00388 3 REFLANLSHELRTPLTAIRGYLELLEDT-ELSEEQREYLETILRSAERLLRLINDLLDL 60 (66)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999998762 223333677888889999999999998654
No 74
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.77 E-value=0.00026 Score=66.65 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHHHHHHhhcCC----CCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCC
Q 007012 488 EEPALRQALSNLIEGALMRTQV----GGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWN 563 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~----gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~G 563 (621)
+-..++-++..++.||++|+.. .+.|.|.+. ..++.+.+.|+|.|+|+..-...+.+.+... ... ..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~-~~~~~~~i~i~D~G~~~~~~~~~~~~~~~~~----~~~----~~ 107 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVS-LDDGKLEIRIWDQGPGIEDLEESLGPGDTTA----EGL----QE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEE-EcCCeEEEEEEeCCCCCCCHHHhcCCCCCCC----ccc----cc
Confidence 4567888999999999998754 478999885 4567799999999999876544445543221 100 14
Q ss_pred ccchHHHHHHHHHHcCCEEEEEeCC
Q 007012 564 FVAGLTVARELLESYGCVVRVISPW 588 (621)
Q Consensus 564 tGLGLaIvr~lve~~GG~I~v~S~~ 588 (621)
-|+||.++++++. ++.+.+..
T Consensus 108 ~G~Gl~l~~~~~D----~~~~~~~~ 128 (146)
T COG2172 108 GGLGLFLAKRLMD----EFSYERSE 128 (146)
T ss_pred ccccHHHHhhhhe----eEEEEecc
Confidence 4899999999874 56676443
No 75
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=97.74 E-value=0.00017 Score=55.74 Aligned_cols=59 Identities=22% Similarity=0.375 Sum_probs=48.9
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~ 366 (621)
..++++.++||+||||++|.++++.+.......+.....+..+...++++..+++++..
T Consensus 4 ~~~~~~~~~hel~~pl~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 62 (65)
T cd00082 4 KGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLD 62 (65)
T ss_pred HHHHHHHHhHHhcchHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999998876655556667778888888999988888854
No 76
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.52 E-value=0.00049 Score=72.94 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccc-cCCCC-CCcc
Q 007012 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMV-EDNMT-WNFV 565 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~-~~~~~-~GtG 565 (621)
..+.+++.|||+||+++.. ..|.|.+. .++...|.|.|+|.||+.+ +.+|++|++........ ..... +-.|
T Consensus 21 ~~~~~~l~eLi~Na~dA~a--~~I~i~~~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~rG 96 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGA--TRIDVEIE--EGGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGFRG 96 (312)
T ss_pred hhHHHHHHHHHHHHHHCCC--CEEEEEEE--eCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCccc
Confidence 4678999999999999864 57888773 2345569999999999998 88999998764322110 00001 2457
Q ss_pred chHHHHHHHHHHcCCEEEEEeC
Q 007012 566 AGLTVARELLESYGCVVRVISP 587 (621)
Q Consensus 566 LGLaIvr~lve~~GG~I~v~S~ 587 (621)
.||+-...+. .+++.+.
T Consensus 97 ~al~si~~~s-----~~~i~S~ 113 (312)
T TIGR00585 97 EALASISSVS-----RLTITTK 113 (312)
T ss_pred hHHHHHHhhC-----cEEEEEe
Confidence 7776655442 4555553
No 77
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A.
Probab=96.95 E-value=0.014 Score=51.82 Aligned_cols=119 Identities=23% Similarity=0.335 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCeee---ecccccCCcchhhhhhhhc
Q 007012 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV---LVGNFNMPAGLRAAEAALS 190 (621)
Q Consensus 116 ~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~---l~~~~~~~~~~~~~~~~~~ 190 (621)
|..++++..++.+.+.++.+ ++++|+... +...+.++..|..... ..+.. +.+.+. ... + ...
T Consensus 1 dl~~l~~~i~~~l~~~~~~~-~~~l~~~d~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~----~-~~~ 68 (129)
T PF13492_consen 1 DLDELLERILELLRELLGAD-RAALFLLDE-----DGNRLRVVAGWGGDPRLSESLPEDDPLIGRAL-ETG----E-PVS 68 (129)
T ss_dssp -HHHHHHHHHHHHHHHST-S-EEEEEEEET-----TCECEEEEEEESS-GCGHHCEETTSHHHHHHH-HHT----S--EE
T ss_pred CHHHHHHHHHHHHHHHhCCC-EEEEEEEEC-----CCCEEEEEEEeCCCccccccCCCCccHHHHHH-hhC----C-eEE
Confidence 57789999999999999666 666999873 2357888899833222 11110 111000 000 0 000
Q ss_pred c---ccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhh
Q 007012 191 S---QQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHER 267 (621)
Q Consensus 191 ~---~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~ 267 (621)
. ......+....+++||...++++|+|++.. ... +.
T Consensus 69 ~~~~~~~~~~~~~s~~~vPl~~~~~~~Gvl~~~~-----------~~~---------~~--------------------- 107 (129)
T PF13492_consen 69 VPDIDERDFLGIRSLLVVPLRSRDRVIGVLCLDS-----------REP---------EE--------------------- 107 (129)
T ss_dssp ESTCCC-TTTTTCEEEEEEEEETTEEEEEEEEEE-----------CTT---------CG---------------------
T ss_pred ecccccccCCCCCEEEEEEEeECCEEEEEEEEEE-----------CCC---------CC---------------------
Confidence 0 000114456789999999999999999873 100 11
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHH
Q 007012 268 MRVYKFSADQRLNAINICRSLAMAY 292 (621)
Q Consensus 268 ~~~~~f~~e~r~~~~~ia~~lala~ 292 (621)
|++++...++.++.++++|.
T Consensus 108 -----~~~~d~~~l~~~a~~~a~al 127 (129)
T PF13492_consen 108 -----FSDEDLQLLESLANQLAIAL 127 (129)
T ss_dssp ------SHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHh
Confidence 56688888889999998865
No 78
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.60 E-value=0.044 Score=62.47 Aligned_cols=147 Identities=7% Similarity=-0.012 Sum_probs=86.6
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCeee-----eccccc-----
Q 007012 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNFN----- 177 (621)
Q Consensus 110 l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~~~~~----- 177 (621)
.+..+.|+.++.+..++.+.+.++.+ ++++|+... .+ .+..++.|..... ..... ++|.+.
T Consensus 13 ~l~~~~dl~~lL~~il~~l~~~l~a~-~~~I~L~d~----~~--~~l~~aa~g~~~~~~~~~~~~~~~gi~g~v~~~~~p 85 (534)
T TIGR01817 13 ILSAPTRLEKTLANVLNVLSNDLGMR-HGLITLSDS----EG--EPLLVAAIGWSEEGFAPIRYRVGEGAIGQIVATGNS 85 (534)
T ss_pred HHhccCCHHHHHHHHHHHHHHhcCCC-EEEEEEECC----CC--CEEEEEEeCCChhhcccccccCCccHHHHHHhcCCe
Confidence 45677899999999999999999555 555888752 11 2333455543211 00001 223321
Q ss_pred --CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 007012 178 --MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (621)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (621)
++....++. ......+........+++||+.+|.++|+|++.. . .....
T Consensus 86 vii~Dv~~d~~-~~~~~~~~~~~~~S~l~VPL~~~g~viGvL~v~s-----------~-----------~~~~~------ 136 (534)
T TIGR01817 86 LVVPDVAAEPL-FLDRLSLYDPGPVPFIGVPIKADSETIGVLAADR-----------D-----------FRSRE------ 136 (534)
T ss_pred EEecccccCch-hhhccccccCCcceEEEEEEcCCCEEEEEEEEEe-----------c-----------ccccc------
Confidence 222111111 1111122233346889999999999999999882 1 11111
Q ss_pred ccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNN 309 (621)
Q Consensus 256 e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~qr~~~lqq~~~q~~ 309 (621)
|++++...+..+|..++++..+.+....+++...+++
T Consensus 137 -----------------ft~~d~~lL~~lA~~ia~aI~~~~~~~~~~~~l~~~~ 173 (534)
T TIGR01817 137 -----------------RLEEEVRFLEMVANLIGQTVRLHRLVAQRRERLIAEA 173 (534)
T ss_pred -----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999998765555444444444333
No 79
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=96.32 E-value=0.016 Score=67.21 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCcccc
Q 007012 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSE 549 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~ 549 (621)
.+..|+.+||+||+.+. ...|.|.+. .++...|.|.|||.||+.+ ..+|.++.+.
T Consensus 22 ~~~svvkElveNsiDAg--at~I~v~i~--~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ts 78 (617)
T PRK00095 22 RPASVVKELVENALDAG--ATRIDIEIE--EGGLKLIRVRDNGCGISKEDLALALARHATS 78 (617)
T ss_pred CHHHHHHHHHHHHHhCC--CCEEEEEEE--eCCeEEEEEEEcCCCCCHHHHHHHhhccCCC
Confidence 46788999999999965 367888883 4566789999999999987 7777776543
No 80
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=96.08 E-value=0.0027 Score=58.91 Aligned_cols=99 Identities=24% Similarity=0.231 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccch--H
Q 007012 493 RQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAG--L 568 (621)
Q Consensus 493 ~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLG--L 568 (621)
..+|..||+||+.+.. ..|.|.+...+.+...|.|.|||.||+.+ ..+|...+......+.. ...+..|+| +
T Consensus 4 ~~al~ElI~Ns~DA~a--~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~--~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDAGA--TNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDR--QSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHHHH--HHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHG--GGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHccC--CEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhh--hcCCCcceEHHH
Confidence 4678889999998654 34777775443456789999999999987 55555433222100000 011256777 3
Q ss_pred HHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 569 TVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 569 aIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
++. .++..+.|.|... +. ..++++.+.
T Consensus 80 A~~-----~~~~~~~v~S~~~-----~~-~~~~~~~~~ 106 (137)
T PF13589_consen 80 AIF-----SLGDRVEVISKTN-----GE-SFTYTIDYD 106 (137)
T ss_dssp GGG-----GTEEEEEEEEEST-----TS-SSEEEEEEE
T ss_pred HHH-----HhcCEEEEEEEEC-----CC-CcEEEEEEe
Confidence 333 3678899988762 22 345555554
No 81
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=95.67 E-value=0.02 Score=66.36 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEecCCeEEEEEEeCCCCCCCC--Cc--------ccCCccccccccccc
Q 007012 489 EPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH--------SLTPFGSELFSENMV 556 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~--------iFe~F~~~~~s~~~~ 556 (621)
...+..++..||+||+.....| ..|.|.+.. ++ .|+|+|||.|||.+ +. +|.....+..-....
T Consensus 35 ~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~--dg--~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf~~~~ 110 (631)
T PRK05559 35 TRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA--DG--SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKFSNKA 110 (631)
T ss_pred CchhhhhhhhhhccccchhhcCCCCEEEEEEeC--CC--cEEEEEcCCCCCcccccccCCcchheeeeeccccCccCCcc
Confidence 4578888999999999865443 478888842 22 79999999999977 44 666543221111111
Q ss_pred cCCCCCCccchHHHHHHHHH
Q 007012 557 EDNMTWNFVAGLTVARELLE 576 (621)
Q Consensus 557 ~~~~~~GtGLGLaIvr~lve 576 (621)
+....+-.|.|++.+..+.+
T Consensus 111 yk~SgGl~GvGls~vNalS~ 130 (631)
T PRK05559 111 YKFSGGLHGVGVSVVNALSS 130 (631)
T ss_pred ccccCcccccchhhhhhhee
Confidence 11011238999999888754
No 82
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=95.65 E-value=0.12 Score=47.40 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCeee-e----ccccc-------CCcc
Q 007012 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-L----VGNFN-------MPAG 181 (621)
Q Consensus 116 ~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-l----~~~~~-------~~~~ 181 (621)
|+.++.+..++.+++.++.+ ++++|+-.. +...+..+..++.... ..... . .++.. ++..
T Consensus 1 Dl~~~l~~~~~~l~~~l~~~-~~~i~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~ 74 (154)
T PF01590_consen 1 DLDELLQRILRELAELLGAD-RASIFLLDP-----DGNRLYSVAGVGLPDPPPGGRRLSMDESICGQVLQSREPIVISDV 74 (154)
T ss_dssp SHHHHHHHHHHHHHHHHTES-EEEEEEEET-----TTTEEEEEEEEEGGGSEHHHEEEETTSSHHHHHHHHTSCEEESSS
T ss_pred CHHHHHHHHHHHHHHHHCCC-EEEEEEEec-----CCCeEEEEEeecccccccccccccccccHHHHHHhCCCeEeeccc
Confidence 56788999999999999666 555776652 2235666666665332 11111 0 01110 1111
Q ss_pred hhhhhh---hhcccc-----------ccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 007012 182 LRAAEA---ALSSQQ-----------VQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 182 ~~~~~~---~~~~~~-----------~~~~~~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
...+.. ...... .........+++||..+|+++|+|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~g~~~G~l~l~ 127 (154)
T PF01590_consen 75 AADPRFAPQIAAQSALRALSSAERPFLAEYGVRSYLCVPIISGGRLIGVLSLY 127 (154)
T ss_dssp GGSTTSSCHHHHHHTTBTTTHHHHHHHHTTTESEEEEEEEEETTEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccCceeeEeeeecccCcEEEEEEE
Confidence 111100 000000 012344579999999999999999998
No 83
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=95.17 E-value=0.37 Score=43.67 Aligned_cols=123 Identities=14% Similarity=0.096 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceeEEEeecCCCCC--CCe-eeec----------------
Q 007012 114 SPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA--TDI-VVLV---------------- 173 (621)
Q Consensus 114 s~~f~~l~~~ql~~~~~~~~~~a~~~-~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~-~~l~---------------- 173 (621)
+.++.++.+..++.+.+.. ++..+ +|+.+. .+ .+..++....... ... ....
T Consensus 1 ~~~~~ell~~~~~~~~~~~--~~~~~~i~l~d~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T PF13185_consen 1 AEDLEELLQQILDALLELT--GADAGAIYLYDP----DG--QLLPVAASGDPSEFLKEEIPLPPPPDEPPAYAAVGLWEG 72 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHH--S-SEEEEEEEET----TS--EEEEEEEESSSCTSTCCECCCCCCCESCHHHCCEETTSH
T ss_pred CcCHHHHHHHHHHHHHHHh--CCCEEEEEEEEC----CC--cEEEEEEeCCchhhhhhhcccCcccccccchhhhhHHHH
Confidence 3578888999899999888 55666 888762 12 4555554433221 000 0000
Q ss_pred ----ccccCCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCC
Q 007012 174 ----GNFNMPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAF 249 (621)
Q Consensus 174 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (621)
|+..+-. .+... ...........-.+.+++||+.+++++|+|.+.. . +. .
T Consensus 73 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~-----------~-----------~~-~- 126 (148)
T PF13185_consen 73 VLRTGEPIIIN-DDDSS-FPPWELARHPGIRSILCVPLRSGGEVIGVLSLYS-----------K-----------EP-N- 126 (148)
T ss_dssp HHHHTS-EEES-CCCGG-GSTTHHHCCTT-SEEEEEEEEETTEEEEEEEEEE-----------S-----------ST-T-
T ss_pred HHhcCceEEEe-Ccccc-ccchhhhccccCCEEEEEEEeECCEEEEEEEEee-----------C-----------CC-C-
Confidence 1110100 00000 0001122244456799999999999999998882 1 11 0
Q ss_pred CCCCccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHH
Q 007012 250 PPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAY 292 (621)
Q Consensus 250 ~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~ 292 (621)
.|+++++..++.++.++++|.
T Consensus 127 ----------------------~f~~~~~~~l~~la~~~a~ai 147 (148)
T PF13185_consen 127 ----------------------AFSEEDLELLEALADQIAIAI 147 (148)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CcCHHHHHHHHHHHHHHHHHh
Confidence 177788899999999998864
No 84
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=94.93 E-value=0.06 Score=62.79 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEecCCeEEEEEEeCCCCCCCC----Cc------ccCCcccccccccc
Q 007012 488 EEPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYM----MH------SLTPFGSELFSENM 555 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e----~~------iFe~F~~~~~s~~~ 555 (621)
++..|.+++..||+||+.-...| ..|.|.+. .++ .|+|+|||.|||.+ .. +|.....+..-...
T Consensus 27 ~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~~ 102 (654)
T TIGR01059 27 GETGLHHLVYEVVDNSIDEAMAGYCDTINVTIN--DDG--SVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDKD 102 (654)
T ss_pred CcchHHhhhHHhhhccccccccCCCCEEEEEEe--CCC--cEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCCC
Confidence 34678899999999999843333 58888884 223 39999999999975 11 22221111000000
Q ss_pred ccCCCCCCccchHHHHHHHHH
Q 007012 556 VEDNMTWNFVAGLTVARELLE 576 (621)
Q Consensus 556 ~~~~~~~GtGLGLaIvr~lve 576 (621)
......+-.|.||+.+..+.+
T Consensus 103 ~~k~s~G~~G~gl~~inalS~ 123 (654)
T TIGR01059 103 SYKVSGGLHGVGVSVVNALSE 123 (654)
T ss_pred cceecCCccchhHHHHHHhcC
Confidence 000001248999999988776
No 85
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases. Mutations within these domains in PDE6B result in autosomal recessive inheritance of retinitis pigmentosa.
Probab=94.66 E-value=1.1 Score=39.01 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCC-eee-----ecccc-------cCCcch
Q 007012 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATD-IVV-----LVGNF-------NMPAGL 182 (621)
Q Consensus 116 ~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~-~~~-----l~~~~-------~~~~~~ 182 (621)
|+.++++..++.+...++.+ ++.+|+... .+...+...+.|+...... ... +.+.+ .++...
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~-~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (149)
T smart00065 1 DLEELLQTILEELRQLLGAD-RVLIYLVDE----DDRGELVLVAADGLTLPLLGLRYPLGEGLAGRVAETGRPLNIPDVE 75 (149)
T ss_pred CHHHHHHHHHHHHHHHhCCc-eEEEEEEec----CCCCcEEEEEecCCCcccceEEecCCCChHHHHHHcCCeEEeechh
Confidence 46778889999999999666 666888763 1223455555554422100 000 00000 011100
Q ss_pred hhhhhhhccccccCCC-CCCeEEEeeeeCCeEEEEEEEe
Q 007012 183 RAAEAALSSQQVQVVP-EQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 183 ~~~~~~~~~~~~~~~~-~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
..+ ... ........ ....+++||..+++++|+|++.
T Consensus 76 ~~~-~~~-~~~~~~~~~~~s~~~~Pl~~~~~~~G~l~~~ 112 (149)
T smart00065 76 ADP-VFA-LDLLGRYQGVRSFLAVPLVADGELVGVLALH 112 (149)
T ss_pred hCC-ccc-cccccceeceeeEEEeeeeecCEEEEEEEEE
Confidence 000 000 00000111 4568999999999999999988
No 86
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=93.84 E-value=0.55 Score=55.74 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=81.4
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCeee-----eccccc-----
Q 007012 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNFN----- 177 (621)
Q Consensus 110 l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~~~~~----- 177 (621)
.+..+.|+.++.+..++.+.+.++.+ .+++||... +...|...+.+..... ....+ ++|.+.
T Consensus 11 ~L~s~~dL~e~L~~Iv~~~~~~l~~d-~~sI~L~D~-----~~~~L~~~as~Gl~~~~~~~~~l~~geGi~G~Va~tg~p 84 (748)
T PRK11061 11 KVASAPRLNEALDILVTETCLAMDTE-VCSVYLADH-----DRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEP 84 (748)
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCCC-EEEEEEEEC-----CCCEEEEEEeeCCChHhccceeccCCcchHHHHhccCce
Confidence 45667789999999999999999555 555999862 1235666666654211 11111 233332
Q ss_pred --CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 007012 178 --MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (621)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (621)
++....+|. ...........-...+.+||.+++.++|+|.+.. . ++.
T Consensus 85 V~V~Dv~~dpr-f~~~~~~~~~~~~S~L~VPL~~~geVIGVL~v~~-----------~-----------~~~-------- 133 (748)
T PRK11061 85 INLADAQKHPS-FKYIPSVKEERFRAFLGVPIIYRRQLLGVLVVQQ-----------R-----------ELR-------- 133 (748)
T ss_pred EEECCcccCcc-cccCccccCccceEEEEEEEeeCCEEEEEEEEee-----------C-----------CCC--------
Confidence 222222111 1111111122234789999999999999999882 1 111
Q ss_pred ccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKS 298 (621)
Q Consensus 256 e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~qr~ 298 (621)
.|++++...+..++.++++|....+..
T Consensus 134 ----------------~Fs~~d~~lL~~LA~~aAiAL~na~l~ 160 (748)
T PRK11061 134 ----------------QFDESEESFLVTLATQLAAILSQSQLT 160 (748)
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 166677778888999888877554443
No 87
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=93.55 E-value=0.11 Score=60.45 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEecCCeEEEEEEeCCCCCCCC--C--c------ccCCcccccccccc
Q 007012 488 EEPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYM--M--H------SLTPFGSELFSENM 555 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~--~------iFe~F~~~~~s~~~ 555 (621)
+...|..++..||+||+.-...| ..|.|.+. .++ .|+|+|||.|||.+ + . +|.....+..-...
T Consensus 34 ~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~ 109 (638)
T PRK05644 34 GERGLHHLVYEIVDNSIDEALAGYCDHIEVTIN--EDG--SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGG 109 (638)
T ss_pred ChhhHHhhhHHhhhcccccccCCCCCEEEEEEe--CCC--cEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCC
Confidence 44678899999999999843333 58888884 223 79999999999975 1 1 33222111000000
Q ss_pred ccCCCCCCccchHHHHHHHHH
Q 007012 556 VEDNMTWNFVAGLTVARELLE 576 (621)
Q Consensus 556 ~~~~~~~GtGLGLaIvr~lve 576 (621)
.+..-.+-.|.||+.+..+.+
T Consensus 110 ~yk~s~G~~G~Gls~vnalS~ 130 (638)
T PRK05644 110 GYKVSGGLHGVGVSVVNALST 130 (638)
T ss_pred cccccCCccccchhhhhheec
Confidence 000001247999999988776
No 88
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.85 E-value=3.4 Score=48.68 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=72.8
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC-----CCee----eeccccc---C
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA-----TDIV----VLVGNFN---M 178 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~-----~~~~----~l~~~~~---~ 178 (621)
+..+.|..++....++.+.+.++.+ .+++++..+. . .+|..++.|..... +... .++|.+. -
T Consensus 194 l~s~~dl~ell~~I~~~i~~~~~a~-~~~I~L~d~~---~--~~L~~~aa~g~~~~~~~~~~~~~~~~~~l~g~V~~~~~ 267 (686)
T PRK15429 194 VLSRLDMDELVSEVAKEIHYYFDID-AISIVLRSHR---K--NKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKE 267 (686)
T ss_pred HccCCCHHHHHHHHHHHHHHHhCCC-EEEEEEEECC---C--CcEEEEEecccChhhcccccccCCcccchHHHHHhcCc
Confidence 4556788899999999999999555 5558887621 2 24655554432110 0000 0112111 0
Q ss_pred Ccchhhhh-hhhcc--ccccC---CCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCC
Q 007012 179 PAGLRAAE-AALSS--QQVQV---VPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPS 252 (621)
Q Consensus 179 ~~~~~~~~-~~~~~--~~~~~---~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (621)
|.--.+.+ +.+.. ..... ..-+.++++||+.++.++|+|.+.. .. . .
T Consensus 268 p~lv~~~~~d~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~v~GvL~l~~----------~~-~---------~------- 320 (686)
T PRK15429 268 MLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQ----------CE-E---------K------- 320 (686)
T ss_pred eEEEECccCcccchhhhhhhhcccccceEEEEEeEEECCEEEEEEEEee----------CC-C---------C-------
Confidence 00000000 00000 00000 0124678999999999999998872 00 0 1
Q ss_pred CccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 007012 253 FDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (621)
Q Consensus 253 ~~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l 294 (621)
.|+++....+..+|.++++|...
T Consensus 321 -------------------~F~~~dl~lL~~iA~~~A~Aie~ 343 (686)
T PRK15429 321 -------------------VFTTTNLKLLRQIAERVAIAVDN 343 (686)
T ss_pred -------------------cCCHHHHHHHHHHHHHHHHHHHH
Confidence 16678888888999999988744
No 89
>PRK05218 heat shock protein 90; Provisional
Probab=92.63 E-value=0.23 Score=57.50 Aligned_cols=42 Identities=24% Similarity=0.168 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 495 ALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 495 VL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.|..||.||..+. .....|.|.+. . +.-.|.|.|||.||+.+
T Consensus 30 ~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d--~-~~~~i~I~DnG~GMt~e 87 (613)
T PRK05218 30 FLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFD--K-EARTLTISDNGIGMTRE 87 (613)
T ss_pred HHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEc--C-CCCeEEEEECCCCCCHH
Confidence 4667777777652 12245666552 2 33359999999999986
No 90
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=92.40 E-value=0.15 Score=58.80 Aligned_cols=43 Identities=7% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 493 RQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 493 ~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.+++..||+||+...-. ...|.|.+. .++ .|+|+|||.|||.+
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~--~~g--~I~V~DnG~GIp~~ 47 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTID--KDN--SISVEDNGRGIPVE 47 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEe--CCC--eEEEEEeCCceeCC
Confidence 45666788888886533 357888883 223 79999999999975
No 91
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=92.10 E-value=0.12 Score=59.99 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccc
Q 007012 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGS 548 (621)
Q Consensus 492 L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~ 548 (621)
-.-|+..|++||+.+.. .+|.|.+. .++.-.|.|.|||.||+++ +..+.++.+
T Consensus 24 PaSVVKELVENSlDAGA--t~I~I~ve--~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaT 78 (638)
T COG0323 24 PASVVKELVENSLDAGA--TRIDIEVE--GGGLKLIRVRDNGSGIDKEDLPLALLRHAT 78 (638)
T ss_pred HHHHHHHHHhcccccCC--CEEEEEEc--cCCccEEEEEECCCCCCHHHHHHHHhhhcc
Confidence 34688999999999854 57888882 4455569999999999987 555666543
No 92
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=91.96 E-value=3.7 Score=39.02 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.4
Q ss_pred CCCeEEEeeeeCCeEEEEEEEe
Q 007012 199 EQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 199 ~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
+++-+|+||+++|+++|+|-+.
T Consensus 113 s~SEIVvPi~~~g~~iGvlDiD 134 (163)
T COG1956 113 SNSEIVVPIFKDGKLIGVLDID 134 (163)
T ss_pred cCceEEEEEEECCEEEEEEecC
Confidence 3467999999999999999777
No 93
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=91.86 E-value=0.33 Score=57.20 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEecCCeEEEEEEeCCCCCCCC----------CcccCCcccccccccccc
Q 007012 490 PALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHYM----------MHSLTPFGSELFSENMVE 557 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e----------~~iFe~F~~~~~s~~~~~ 557 (621)
.-|..++..+|+||+.-.-+| ..|.|.+. .++ .|+|+|||.|||.+ +-+|.....+..-....+
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~--~dg--sIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggKfd~~~y 111 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHCDDITVTIH--ADG--SVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGKFDQNSY 111 (756)
T ss_pred cchhhhhhHhhcccccccccCCCCEEEEEEc--CCC--eEEEEEcCCcccCCcccccCCchhhheeeeecccCCCCCCcc
Confidence 468888999999999843334 68888883 223 79999999999975 123322221110000000
Q ss_pred CCCCCCccchHHHHHHHHH
Q 007012 558 DNMTWNFVAGLTVARELLE 576 (621)
Q Consensus 558 ~~~~~GtGLGLaIvr~lve 576 (621)
.--.+-.|.|++.+..+-+
T Consensus 112 kvSgGlhGvG~svvNAlS~ 130 (756)
T PRK14939 112 KVSGGLHGVGVSVVNALSE 130 (756)
T ss_pred cccCCccCccceEeehccC
Confidence 0001237899998887766
No 94
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=91.18 E-value=5.4 Score=45.31 Aligned_cols=146 Identities=12% Similarity=0.006 Sum_probs=81.6
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCe-eeec--ccc----------
Q 007012 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDI-VVLV--GNF---------- 176 (621)
Q Consensus 110 l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~-~~l~--~~~---------- 176 (621)
.+..|.|+.++.+..++.+...++.+ .+++++... + .+..++.++.....+. ..-. |.|
T Consensus 12 ~L~~s~d~~e~L~~vl~~l~~~l~~~-~~~l~l~~~-----~--~l~~~as~gl~~~~~~~~~~~geGP~l~av~~~g~~ 83 (509)
T PRK05022 12 DLSRGLPHQDRFQRLLTTLRQVLPCD-ASALLRLDG-----D--QLVPLAIDGLSPDVLGRRFALEEHPRLEAILRAGDP 83 (509)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCC-EEEEEecCC-----C--cEEEEEEcCCChHhhCCccCCCcchHHHHHHhcCCe
Confidence 34567788889999999999999543 666776652 1 4666676664322000 0000 101
Q ss_pred c-CCcchhhhhhh--hccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCC
Q 007012 177 N-MPAGLRAAEAA--LSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSF 253 (621)
Q Consensus 177 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (621)
- ++...+.|... ..........-.+.+.+||..++.++|+|.+.. . ++.
T Consensus 84 v~v~~~~~~p~~~~~~~~~~~~~~gi~S~l~vPL~~~~~~~GvL~l~~-----------~-----------~~~------ 135 (509)
T PRK05022 84 VRFPADSELPDPYDGLIPGVQESLPVHDCMGLPLFVDGRLIGALTLDA-----------L-----------DPG------ 135 (509)
T ss_pred EEEecCCCCCcccccccccccccCCcceEEEEEEEECCEEEEEEEEee-----------C-----------CCC------
Confidence 0 11111111100 000011122223679999999999999998872 1 110
Q ss_pred ccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 254 DTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNN 309 (621)
Q Consensus 254 ~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~qr~~~lqq~~~q~~ 309 (621)
.|+++....+..++..++.|....++...+++...+.+
T Consensus 136 ------------------~f~~~~~~~l~~~a~~~a~Al~~a~~~~~l~~~~~~~~ 173 (509)
T PRK05022 136 ------------------QFDAFSDEELRALAALAAATLRNALLIEQLESQAELPQ 173 (509)
T ss_pred ------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15556677788888888888766665555555444333
No 95
>PLN03237 DNA topoisomerase 2; Provisional
Probab=90.94 E-value=0.35 Score=60.20 Aligned_cols=84 Identities=7% Similarity=0.043 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC----------CcccCCccccccccccccC
Q 007012 492 LRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM----------MHSLTPFGSELFSENMVED 558 (621)
Q Consensus 492 L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e----------~~iFe~F~~~~~s~~~~~~ 558 (621)
|..||..+|+||+... +....|.|.+.. ++ -.|+|+|||.|||-+ +-||.....+..=....+.
T Consensus 78 L~kifdEIldNAvDe~~r~g~~~~I~V~I~~-~~--gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 78 LYKIFDEILVNAADNKQRDPKMDSLRVVIDV-EQ--NLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhhHHHHhhhhHhHHhhcCCCCEEEEEEEc-CC--CEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 4455555555555432 334678888842 22 259999999999965 2234333322110010000
Q ss_pred CCCCCccchHHHHHHHHHHc
Q 007012 559 NMTWNFVAGLTVARELLESY 578 (621)
Q Consensus 559 ~~~~GtGLGLaIvr~lve~~ 578 (621)
-.++-.|.|.++|.-+-+.+
T Consensus 155 vSGGlhGVGasvvNaLS~~f 174 (1465)
T PLN03237 155 TTGGRNGYGAKLTNIFSTEF 174 (1465)
T ss_pred eeccccccCccccccccCee
Confidence 01123899998887766554
No 96
>PRK14083 HSP90 family protein; Provisional
Probab=90.56 E-value=0.22 Score=57.36 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCC--------CCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 494 QALSNLIEGALMRTQV--------GGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 494 qVL~NLL~NAlk~t~~--------gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
..+.+||.||..+... .+.|.|.+. +.+...|.|.|||+||+.+
T Consensus 26 iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~--d~~~~~l~I~DnGiGmt~e 77 (601)
T PRK14083 26 VYVRELLQNAVDAITARRALDPTAPGRIRIELT--DAGGGTLIVEDNGIGLTEE 77 (601)
T ss_pred HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc--cCCCcEEEEEeCCCCCCHH
Confidence 4577888888876432 236777762 3456789999999999986
No 97
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=89.84 E-value=6.1 Score=38.63 Aligned_cols=123 Identities=13% Similarity=0.040 Sum_probs=74.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 007012 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (621)
Q Consensus 448 ~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (621)
+.++..++-.-+-..+ ....+++.+..+.. .. +....+++.|++-=|....|.||.|.|... ...+...+
T Consensus 51 ~~i~~~e~~~~~~~~~----~~~r~~l~W~~~~~----~~-~k~~vklllnl~l~a~~alprGG~i~V~~~-~~~~~~~~ 120 (182)
T PF10090_consen 51 QQIDLGEARSVLRGYF----AGGRITLDWQVERD----LL-PKPEVKLLLNLLLCAEDALPRGGEITVSIE-GSEGDGGW 120 (182)
T ss_pred CCCCHHHHHHHHHHHH----hCCceEEEccCccc----cC-CHHHHHHHHHHHHHHHhhcCCCCEEEEEEe-ccCCCceE
Confidence 3456555544333322 22345555544222 11 234458899999999999999999999874 44566778
Q ss_pred EEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEe
Q 007012 528 VIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVIS 586 (621)
Q Consensus 528 ~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S 586 (621)
.|.=+|+.+..++.+...+--.. .. ..- ....+=-++...+++..|++|.+..
T Consensus 121 ~v~a~G~~~~~~~~~~~~L~g~~-~~-~~l----~~~~VQ~~~~~~la~~~G~~l~~~~ 173 (182)
T PF10090_consen 121 RVRAEGPRARLDPDLWAALAGED-PE-EDL----DPRNVQFYLLPLLAREAGRRLSVEA 173 (182)
T ss_pred EEEEeccccCCCHHHHHHhcCCC-CC-CCC----CHHhHHHHHHHHHHHHcCCeEEEEe
Confidence 88888887654422222221110 00 000 1344567888999999999999976
No 98
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=89.56 E-value=0.46 Score=55.13 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEEeCCCCCCCC----------CcccCCccccccccccccCCC
Q 007012 493 RQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYM----------MHSLTPFGSELFSENMVEDNM 560 (621)
Q Consensus 493 ~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e----------~~iFe~F~~~~~s~~~~~~~~ 560 (621)
..++..||+||+.-.-+ ...|.|.+. . + -.|+|+|||.|||.+ +.+|.....+..-.......-
T Consensus 32 ~~lv~ElvdNsiDE~~ag~a~~I~V~i~--~-d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~~~~~~S 107 (625)
T TIGR01055 32 NHLVQEVIDNSVDEALAGFASIIMVILH--Q-D-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSNKNYHFS 107 (625)
T ss_pred ceeehhhhhcccchhhcCCCCEEEEEEe--C-C-CeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCCCcceec
Confidence 44556666666652112 357888883 2 2 469999999999975 113311111100000001101
Q ss_pred CCCccchHHHHHHHHHHc
Q 007012 561 TWNFVAGLTVARELLESY 578 (621)
Q Consensus 561 ~~GtGLGLaIvr~lve~~ 578 (621)
.+-.|.||+.+..+.+.+
T Consensus 108 gG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 108 GGLHGVGISVVNALSKRV 125 (625)
T ss_pred CCCcchhHHHHHHhcCeE
Confidence 123899999999888743
No 99
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=87.35 E-value=0.78 Score=57.24 Aligned_cols=86 Identities=6% Similarity=0.004 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhh--cCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC----------CcccCCcccccccccccc
Q 007012 490 PALRQALSNLIEGALMR--TQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM----------MHSLTPFGSELFSENMVE 557 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~--t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e----------~~iFe~F~~~~~s~~~~~ 557 (621)
..+.+||.|-++|+++- .+....|.|.+.. +.-.|+|+|||.|||-+ +-+|.....+..=....+
T Consensus 60 ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~---d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~~y 136 (1388)
T PTZ00108 60 KIFDEILVNAADNKARDKGGHRMTYIKVTIDE---ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDTEK 136 (1388)
T ss_pred hhHHHHhhhhhhhhcccCCCCCccEEEEEEec---cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCCce
Confidence 44555555555555542 2334678888842 21259999999999965 223333332211000000
Q ss_pred CCCCCCccchHHHHHHHHHHc
Q 007012 558 DNMTWNFVAGLTVARELLESY 578 (621)
Q Consensus 558 ~~~~~GtGLGLaIvr~lve~~ 578 (621)
.-.++-.|.|..+|.-+-+.+
T Consensus 137 KvSGGlhGVGasvvNalS~~f 157 (1388)
T PTZ00108 137 RVTGGRNGFGAKLTNIFSTKF 157 (1388)
T ss_pred eeecccccCCccccccccceE
Confidence 000123799988887766544
No 100
>PLN03128 DNA topoisomerase 2; Provisional
Probab=86.71 E-value=0.69 Score=56.90 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
..+.+||.|-++|+++. +....|.|.+.. + .-.|+|+|||.|||-+
T Consensus 55 ki~dEIldNAvDe~~~~-g~~~~I~V~i~~-~--dgsIsV~DnGrGIPv~ 100 (1135)
T PLN03128 55 KIFDEILVNAADNKQRD-PSMDSLKVDIDV-E--QNTISVYNNGKGIPVE 100 (1135)
T ss_pred HHHHHHHHHHHHHhhhc-CCCcEEEEEEEc-C--CCeEEEEecCccccCC
Confidence 34444445555554432 234678888842 1 2359999999999964
No 101
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=86.67 E-value=0.59 Score=54.34 Aligned_cols=85 Identities=9% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC----------CcccCCccccccccccc
Q 007012 489 EPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM----------MHSLTPFGSELFSENMV 556 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e----------~~iFe~F~~~~~s~~~~ 556 (621)
..-|..++..+|+||+.-. .....|.|.+. .++ .|+|+|||.|||-+ +-+|.....+..-....
T Consensus 32 ~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~--~dg--sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~ 107 (637)
T TIGR01058 32 SKGLHHLVWEIVDNSVDEVLAGYADNITVTLH--KDN--SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGG 107 (637)
T ss_pred cchhheehhhhhcchhhhhhcCCCcEEEEEEc--CCC--eEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCc
Confidence 3456666666666666532 23357888884 222 69999999999964 22232222111000000
Q ss_pred cCCCCCCccchHHHHHHHHHH
Q 007012 557 EDNMTWNFVAGLTVARELLES 577 (621)
Q Consensus 557 ~~~~~~GtGLGLaIvr~lve~ 577 (621)
+.-..+-.|.|++.+.-+-+.
T Consensus 108 ykvSGGlhGvG~svvNAlS~~ 128 (637)
T TIGR01058 108 YKTAGGLHGVGASVVNALSSW 128 (637)
T ss_pred ccccCCcccccccccceeece
Confidence 100112489999988776654
No 102
>PTZ00130 heat shock protein 90; Provisional
Probab=85.77 E-value=0.98 Score=53.42 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.2
Q ss_pred CeEEEEEEeCCCCCCCC
Q 007012 523 GDALVVIDDDGPDMHYM 539 (621)
Q Consensus 523 ~~v~I~V~D~G~GI~~e 539 (621)
..-.|+|.|||+||..+
T Consensus 133 ~~~tLtI~DnGIGMT~e 149 (814)
T PTZ00130 133 EKNILSITDTGIGMTKE 149 (814)
T ss_pred CCCEEEEEECCCCCCHH
Confidence 34478999999999976
No 103
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.90 E-value=35 Score=32.80 Aligned_cols=98 Identities=20% Similarity=0.090 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHH
Q 007012 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARE 573 (621)
Q Consensus 494 qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~ 573 (621)
..+.||+-=|.-.-|.||.+.+.+. ..+..-+|.|.-.|+-+--.+++.+- +++...... -.+.-.-=|..--
T Consensus 116 kllLNl~lia~~aiPrGG~~~vtle-~~e~d~rfsi~akG~m~Rvppk~lel-~~G~~~eE~-----vdahsVQpyYt~l 188 (214)
T COG5385 116 KLLLNLFLIAYGAIPRGGSLVVTLE-NPETDARFSIIAKGRMMRVPPKFLEL-HSGEPPEEA-----VDAHSVQPYYTLL 188 (214)
T ss_pred HHHHHHHHHHcccCCCCCeeEEEee-cCCcCceEEEEecCccccCCHHHHhh-hcCCCcccc-----CCCccccHHHHHH
Confidence 4577888888888899999988884 34455677887777644221222222 222111100 0134445566677
Q ss_pred HHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 574 LLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 574 lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
+++.-|++|.+.... .-..|+-|.|
T Consensus 189 La~eAgm~I~v~~~~--------e~iv~~A~v~ 213 (214)
T COG5385 189 LAEEAGMTISVHATA--------ERIVFTAWVV 213 (214)
T ss_pred HHHHcCCeEEEEecc--------ceEEEEEecc
Confidence 889999999998854 3577777665
No 104
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=83.63 E-value=4.2 Score=46.06 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCC-CCCC-eee-----ecccc---cCCcchhh
Q 007012 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGV-NATD-IVV-----LVGNF---NMPAGLRA 184 (621)
Q Consensus 115 ~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~-~~~~-~~~-----l~~~~---~~~~~~~~ 184 (621)
.|.++=-.-.+..++..++.+ .|+|||..+. + -.|...|-=.-. .+.. +.+ |||.. +=|--..+
T Consensus 16 ~~~qe~Ld~iVr~i~~aM~tE-VCSvYl~~~d---~--~~leL~ATeGLnk~av~~~~l~~~eGLVG~v~~~aePlNLsd 89 (756)
T COG3605 16 LELQEALDIIVRDIALAMVTE-VCSVYLLRAD---R--RVLELMATEGLNKPAVHLVQLAFGEGLVGLVGRSAEPLNLAD 89 (756)
T ss_pred cCHHHHHHHHHHHHHHHhhhh-heeEEEEcCC---C--cEEEEEeccccCccccceEEecCCCchhhhhhhccCCCChhh
Confidence 344444555666777777666 8899999832 2 133333332211 1111 111 34444 33322222
Q ss_pred hhh---hhccccccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 007012 185 AEA---ALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 185 ~~~---~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
+.. +.--..+++-.=+.-+-+|+++.++++||||+.
T Consensus 90 AqsHPsF~Y~petgEE~Y~sFLGvPIi~~~r~lGVLVVQ 128 (756)
T COG3605 90 AQSHPSFKYLPETGEERYHSFLGVPIIRRGRLLGVLVVQ 128 (756)
T ss_pred hhhCCccccccccchHHHHHhhccceeecCceeEEEEEe
Confidence 211 111122233333457899999999999999998
No 105
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=82.89 E-value=1.1 Score=51.11 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=19.1
Q ss_pred eEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 512 KVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.++|++. .+.+.-.++|.|||+||..+
T Consensus 62 ~~~I~i~-~Dk~~kTLtI~DNGIGMT~~ 88 (623)
T COG0326 62 DLRIRIS-FDKDNKTLTISDNGIGMTKD 88 (623)
T ss_pred CceEEEE-EcccCCEEEEEeCCCCCCHH
Confidence 3555552 24455789999999999875
No 106
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms]
Probab=80.26 E-value=7.1 Score=35.07 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=19.2
Q ss_pred CCeEEEeeeeCCeEEEEEEEe
Q 007012 200 QRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 200 ~~~lv~PL~~~~~vvGvLv~~ 220 (621)
...+++||+.++.++|+|++.
T Consensus 115 ~~~l~vPl~~~~~~~G~l~~~ 135 (175)
T COG2203 115 RSYLGVPLIAQGELLGLLCVH 135 (175)
T ss_pred HHheeeeeeECCEeeEEeeee
Confidence 457999999999999999988
No 107
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=76.98 E-value=2.2 Score=48.00 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCcccc
Q 007012 494 QALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSE 549 (621)
Q Consensus 494 qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~ 549 (621)
-++..|++|.+.+.. ..|.|.+. +++--.+.|+|||.||..+ +-+.++|.+.
T Consensus 30 NAlKEliENSLDA~S--T~I~V~vk--~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 30 NALKELIENSLDANS--TSIDVLVK--DGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred HHHHHHHhccccCCC--ceEEEEEe--cCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 456778899998754 57888773 4555678899999999987 7777887543
No 108
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=76.74 E-value=3.3 Score=48.64 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.5
Q ss_pred CeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 511 GKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 511 g~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
+.+.|++.. +.+...|.|.|+|+||+.+
T Consensus 59 ~~~~I~i~~-d~~~~~L~I~DnGiGMt~e 86 (701)
T PTZ00272 59 PRLCIRVVP-DKENKTLTVEDNGIGMTKA 86 (701)
T ss_pred CceEEEEEE-cCCCCEEEEEECCCCCCHH
Confidence 456666633 4455689999999999976
No 109
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=72.39 E-value=2.4 Score=49.03 Aligned_cols=43 Identities=14% Similarity=0.360 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhc-CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 492 LRQALSNLIEGALMRT-QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 492 L~qVL~NLL~NAlk~t-~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
+.+|+.|-++||+.-. .....|.|.+. + + .|+|+|||.|||-+
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~--d-g--sisV~dnGrGIPv~ 93 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK--N-N--QVTVSDNGRGIPQA 93 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc--C-C--EEEEEECCCcccCC
Confidence 4466667777766521 12357888873 2 2 49999999999976
No 110
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=69.04 E-value=53 Score=38.78 Aligned_cols=47 Identities=6% Similarity=0.016 Sum_probs=36.4
Q ss_pred CCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccCHHHHH
Q 007012 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (621)
Q Consensus 200 ~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~ 279 (621)
...+.+||...+.|+|+|++.. + +. . .|+++...
T Consensus 115 ~~~lgvPl~~~~~v~G~l~l~~-----------~-----------~~-~-----------------------~Ft~~d~~ 148 (686)
T PRK15429 115 GHYCLMPLAAEGHIFGGCEFIR-----------Y-----------DD-R-----------------------PWSEKEFN 148 (686)
T ss_pred cceEEeceeeCCeeEEEEEEEE-----------c-----------CC-C-----------------------CCCHHHHH
Confidence 4577799999999999998882 1 11 1 27788888
Q ss_pred HHHHHHHHHHHHH
Q 007012 280 NAINICRSLAMAY 292 (621)
Q Consensus 280 ~~~~ia~~lala~ 292 (621)
.+..+|...++|.
T Consensus 149 ll~~la~~a~~ai 161 (686)
T PRK15429 149 RLQTFTQIVSVVT 161 (686)
T ss_pred HHHHHHHHHHHHH
Confidence 8889999888876
No 111
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=68.51 E-value=36 Score=31.62 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=17.3
Q ss_pred eEEEeeeeCCeEEEEEEEe
Q 007012 202 AVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 202 ~lv~PL~~~~~vvGvLv~~ 220 (621)
=+-+|+.++|.++|++.+.
T Consensus 72 GinlPI~~~g~~iGviGIt 90 (135)
T PF05651_consen 72 GINLPIIFNGEVIGVIGIT 90 (135)
T ss_pred ceeeeEEECCEEEEEEEEe
Confidence 3689999999999999888
No 112
>COG3835 CdaR Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]
Probab=68.40 E-value=18 Score=38.75 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=16.0
Q ss_pred EEEeeeeCCeEEEEEEEe
Q 007012 203 VVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 203 lv~PL~~~~~vvGvLv~~ 220 (621)
+=+|++++++||||+.+.
T Consensus 75 INLPi~~~~~vVGViGIT 92 (376)
T COG3835 75 INLPIRFDGKVVGVIGIT 92 (376)
T ss_pred CCcceEecCceEEEEecc
Confidence 568999999999999766
No 113
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=68.06 E-value=5.8 Score=45.70 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 492 L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
+.-++..|++|+++... ..|.|.+. +.|.=.|+|.|||.||++.
T Consensus 21 l~sAVKELvENSiDAGA--T~I~I~~k--dyG~d~IEV~DNG~GI~~~ 64 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGA--TAIDIKVK--DYGSDSIEVSDNGSGISAT 64 (672)
T ss_pred HHHHHHHHHhcCcccCC--ceeeEecC--CCCcceEEEecCCCCCCcc
Confidence 44788999999998854 47888883 3355679999999999865
No 114
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.99 E-value=16 Score=34.25 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCC
Q 007012 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPD 535 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~G 535 (621)
.+.-+...||+||+||... +.|.|... .......+.|.+.-++
T Consensus 63 svgYl~NELiENAVKfra~-geIvieas-l~s~~f~~kvsN~vd~ 105 (184)
T COG5381 63 SVGYLANELIENAVKFRAT-GEIVIEAS-LYSHKFIFKVSNIVDL 105 (184)
T ss_pred hHHHHHHHHHHhhhcccCC-CcEEEEEE-eccceEEEEecccCCC
Confidence 3455678899999999876 57888774 3446677887776543
No 115
>PRK13558 bacterio-opsin activator; Provisional
Probab=63.37 E-value=23 Score=41.28 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=38.2
Q ss_pred CeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccCHHHHHH
Q 007012 201 RAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRLN 280 (621)
Q Consensus 201 ~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~~ 280 (621)
+.+++||.++|.++|+|++.. . ++- .|+++.+..
T Consensus 390 s~~~vPL~~~g~~~GvL~v~~-----------~-----------~~~------------------------~f~~~e~~l 423 (665)
T PRK13558 390 AVAAVPLVYRETTYGVLVVYT-----------A-----------EPD------------------------EIDDRERVV 423 (665)
T ss_pred eEEEEeEEECCEEEEEEEEee-----------C-----------CCC------------------------CCCHHHHHH
Confidence 789999999999999999882 1 110 167788889
Q ss_pred HHHHHHHHHHHHHH
Q 007012 281 AINICRSLAMAYVM 294 (621)
Q Consensus 281 ~~~ia~~lala~~l 294 (621)
+..++.+++.|..-
T Consensus 424 l~~la~~ia~aI~~ 437 (665)
T PRK13558 424 LEALGRAVGAAINA 437 (665)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987743
No 116
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=63.07 E-value=4.3 Score=46.50 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC----------CcccCCccccccccccccCCCC
Q 007012 492 LRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM----------MHSLTPFGSELFSENMVEDNMT 561 (621)
Q Consensus 492 L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e----------~~iFe~F~~~~~s~~~~~~~~~ 561 (621)
+.+|+.|-+++|+.- -...|.|.+. .+ -.|+|.|||.|||-+ +-||.....+-.=.+..+.-.+
T Consensus 41 v~EVvDNsiDEalaG--~~~~I~V~l~-~d---~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~YkvSG 114 (635)
T COG0187 41 VWEVVDNSIDEALAG--YADRIDVTLH-ED---GSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYKVSG 114 (635)
T ss_pred EeEeeechHhHHhhC--cCcEEEEEEc-CC---CeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccEeec
Confidence 334556666666642 2357888883 22 249999999999966 2233333222100111111011
Q ss_pred CCccchHHHHHHHHHH
Q 007012 562 WNFVAGLTVARELLES 577 (621)
Q Consensus 562 ~GtGLGLaIvr~lve~ 577 (621)
+=+|.|.++|..+-+.
T Consensus 115 GLHGVG~SVVNALS~~ 130 (635)
T COG0187 115 GLHGVGVSVVNALSTW 130 (635)
T ss_pred CCCccceEEEecccce
Confidence 2388898888776544
No 117
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=55.63 E-value=2.9 Score=49.98 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 490 PALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~--~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.-|.+++..+|+||+.-.- ....|.|.+. .+ + .|+|+|+|.|||-+
T Consensus 128 ~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~-~D-g--sItV~DnGRGIPvd 175 (903)
T PTZ00109 128 KGLHQLLFEILDNSVDEYLAGECNKITVVLH-KD-G--SVEISDNGRGIPCD 175 (903)
T ss_pred CcceEEEEEEeeccchhhccCCCcEEEEEEc-CC-C--eEEEEeCCcccccc
Confidence 3455555556666665322 2357888883 22 2 59999999999964
No 118
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.15 E-value=54 Score=26.02 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHhHHHHHHHHHHH
Q 007012 309 NARMSNLVEQIRGPLSSIQTLSKM 332 (621)
Q Consensus 309 ~~~la~lsHELRtPLtaI~~~~~l 332 (621)
-+.+...-||+.|-|..|.|+.++
T Consensus 13 ~~~lR~~RHD~~NhLqvI~gllql 36 (62)
T PF14689_consen 13 IDSLRAQRHDFLNHLQVIYGLLQL 36 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHC
Confidence 445566679999999999998775
No 119
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=39.30 E-value=22 Score=41.39 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccc
Q 007012 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGS 548 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~ 548 (621)
..|.|++..|+-|.+.+.. ..|.|.+. -..+.+.|.|+|.|+..+ ..+-++||+
T Consensus 20 ~sla~~VeElv~NSiDA~A--t~V~v~V~---~~t~sv~ViDdG~G~~rdDl~~lg~ry~T 75 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEA--TCVAVRVN---METFSVQVIDDGFGMGRDDLEKLGNRYFT 75 (1142)
T ss_pred HHHHHHHHHHHhhccccCc--eEEEEEec---CceeEEEEEecCCCccHHHHHHHHhhhhh
Confidence 4688999999999998754 45666652 246889999999999876 555555554
No 120
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=38.85 E-value=80 Score=38.04 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=86.3
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEe-cCCceEEEEcHHHHHHHHHHHHHHHHh--hcCCCCe--EEEEEEE--
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSE-LSQSLLVAVEEPALRQALSNLIEGALM--RTQVGGK--VEIVSAA-- 519 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~-~~~~~~V~~D~~~L~qVL~NLL~NAlk--~t~~gg~--I~I~~~~-- 519 (621)
.....+..++...+.............+.+.. ...+..+..|..++.+++.+...++.+ ++..+.. +++....
T Consensus 457 ~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 536 (786)
T KOG0519|consen 457 SIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLG 536 (786)
T ss_pred hhhccHHHHHHHHhhhhhhhccCceeeEEEEeccCCCccchhhhhhhhhhhhhhcchhhhhhccccCcceeEEEEecccC
Confidence 34568888888888888776644555555544 344556777777789999999999988 7766542 2332210
Q ss_pred ------------------ecCC-eEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHc
Q 007012 520 ------------------APAG-DALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESY 578 (621)
Q Consensus 520 ------------------~~~~-~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~ 578 (621)
...+ .+.+.+.++..+.... ...+..|.+....+... ..+.+++++.+.+..+.+
T Consensus 537 ~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 612 (786)
T KOG0519|consen 537 ISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKL----SSGSGLSLALCPENSQLM 612 (786)
T ss_pred ccccccccchhhhhhcccccccchheEEeeeccccccCCCcchhhhhhhccccchhhc----ccccccccccchhhHHhh
Confidence 0012 3566777777766553 33334443332222211 126889999999999999
Q ss_pred CCEEEEE
Q 007012 579 GCVVRVI 585 (621)
Q Consensus 579 GG~I~v~ 585 (621)
+|.+++.
T Consensus 613 ~~~~~~~ 619 (786)
T KOG0519|consen 613 EGNIGLV 619 (786)
T ss_pred hcccccc
Confidence 9998886
No 121
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=35.25 E-value=3.4e+02 Score=25.34 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeee--ecccccCCcc----hhhhhhhhccccc
Q 007012 121 CVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV--LVGNFNMPAG----LRAAEAALSSQQV 194 (621)
Q Consensus 121 ~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~--l~~~~~~~~~----~~~~~~~~~~~~~ 194 (621)
--..+.+++... .|-+-+|+... .+. ++.||+-.......... .||....... .++=+.-....+.
T Consensus 23 l~~~wql~ADLs--~aDl~l~v~~~----~~~--~vvvA~~rP~t~~t~y~~dvVG~~~~~~~ep~v~~a~~tg~~~~~~ 94 (145)
T PF12282_consen 23 LVADWQLLADLS--FADLFLWVPTK----DGN--AVVVAQARPSTAPTLYPDDVVGKVALRENEPAVDRALETGRPVRGG 94 (145)
T ss_dssp HHHHTHHHHHHH--TSEEEEEEE-T----TS---EEEEEEE--SSS--S--S--TT-EE-GGGSHHHHHHHH--------
T ss_pred HHHHHHHHHHhh--cCCEEEEEEcC----CCC--EEEEEEeCCCCCCCCCCCCCCCCccCccccHHHHHHHHhCCceecC
Confidence 334455677777 66777888751 232 88887754422211100 3555542221 1111100000011
Q ss_pred cCCC----CCCeEEEeeeeCCeEEEEEEEe
Q 007012 195 QVVP----EQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 195 ~~~~----~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
.... .-..-++|++++++++|+|..+
T Consensus 95 ~~~~~~~~~v~~~~~PI~~~~~vIaVl~~~ 124 (145)
T PF12282_consen 95 RAVWQGGVPVRQEVVPIRRNGRVIAVLIRE 124 (145)
T ss_dssp ----------EEEEEEEEETTEEEEEEEEE
T ss_pred CccccCCceeEEEEEEEEECCEEEEEEEEE
Confidence 1111 1247899999999999999865
No 122
>PRK04158 transcriptional repressor CodY; Validated
Probab=34.83 E-value=3.7e+02 Score=27.78 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCCCCeEEEeeeeCCeEEEEEEEe
Q 007012 197 VPEQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 197 ~~~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
.+.....++|+...|.-+|.|++.
T Consensus 107 ~~~~~~tIvPI~ggGeRLGTLvl~ 130 (256)
T PRK04158 107 FPDKLTTIVPIIGGGERLGTLILA 130 (256)
T ss_pred ccCceEEEEEEecCCeEEEEEEEE
Confidence 445568999999999999999998
No 123
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=33.56 E-value=53 Score=39.03 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=34.9
Q ss_pred EcHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 487 VEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 487 ~D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
+-..-|.+|+..++.||.. -..+ ..|.+.+.. ..-.|.|+|+|.|||-+
T Consensus 49 t~~pGl~ki~dEilvNaad-k~rd~~m~~i~v~i~~---e~~~isv~nnGkGIPv~ 100 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAAD-KQRDPKMNTIKVTIDK---EKNEISVYNNGKGIPVT 100 (842)
T ss_pred ecCCcHHHHHHHHhhcccc-cccCCCcceeEEEEcc---CCCEEEEEeCCCcceee
Confidence 4445678888888899888 3222 367777632 34569999999999865
No 124
>PRK11477 carbohydrate diacid transcriptional activator CdaR; Provisional
Probab=32.74 E-value=1.9e+02 Score=31.39 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=17.3
Q ss_pred CeEEEeeeeCCeEEEEEEEe
Q 007012 201 RAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 201 ~~lv~PL~~~~~vvGvLv~~ 220 (621)
.-+-+|+.++|.++|++.+.
T Consensus 76 ~GiN~Pi~~~~~viGvIgIt 95 (385)
T PRK11477 76 QGINLPLRLEGEIVGVIGLT 95 (385)
T ss_pred cCceeeEEECCEEEEEEecC
Confidence 34789999999999999766
No 125
>PF07536 HWE_HK: HWE histidine kinase; InterPro: IPR011102 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as IPR003661 from INTERPRO []. In [], the HWE family was defined by the presence of conserved a H residue and a WXE motifs and was limited to members of the proteobacteria. However, many homologues of this domain are lack the WXE motif. Furthermore, homologues are found in a wide range of Gram-positive and Gram-negative bacteria as well as in several archaea.; GO: 0004673 protein histidine kinase activity
Probab=26.33 E-value=3.8e+02 Score=22.46 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHhh
Q 007012 315 LVEQIRGPLSSIQTLSKMLSLH 336 (621)
Q Consensus 315 lsHELRtPLtaI~~~~~lL~~~ 336 (621)
|.|-+||=|+.+.+++.+-.+.
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~ 23 (83)
T PF07536_consen 2 LNHRVKNLLAVVQAIARQTARS 23 (83)
T ss_pred chhHHHHHHHHHHHHHHHHccc
Confidence 5799999999999888776554
No 126
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=22.43 E-value=5.5e+02 Score=25.03 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=19.9
Q ss_pred CCCCeEEEeeeeCCeEEEEEEEe
Q 007012 198 PEQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 198 ~~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
+..-..++|+...|.-+|.|++.
T Consensus 106 ~~k~~tivPI~g~GeRLGTLvl~ 128 (177)
T PF06018_consen 106 PNKYTTIVPIYGGGERLGTLVLA 128 (177)
T ss_dssp SSSEEEEEEEEETTEEEEEEEEE
T ss_pred cCCcEEEEEEeeCCeEEEEEEEE
Confidence 34456799999999999999999
Done!