Query 007012
Match_columns 621
No_of_seqs 561 out of 3680
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 100.0 3.6E-33 1.2E-37 282.3 32.8 231 300-610 12-250 (258)
2 4ew8_A Sensor protein DIVL; si 100.0 7.2E-31 2.5E-35 266.0 31.9 232 294-611 26-259 (268)
3 3jz3_A Sensor protein QSEC; he 100.0 1E-31 3.6E-36 263.7 15.2 216 308-610 2-219 (222)
4 3d36_A Sporulation kinase B; G 100.0 1.9E-30 6.6E-35 258.3 23.9 215 305-610 11-227 (244)
5 3a0r_A Sensor protein; four he 100.0 1.4E-29 4.7E-34 265.5 22.2 213 307-609 131-346 (349)
6 4fpp_A Phosphotransferase; fou 100.0 3.4E-29 1.2E-33 253.5 21.5 195 311-607 49-247 (247)
7 1gkz_A [3-methyl-2-oxobutanoat 100.0 3.1E-28 1.1E-32 262.2 25.9 225 305-611 118-376 (388)
8 2btz_A Pyruvate dehydrogenase 100.0 2.4E-28 8.3E-33 263.6 24.3 219 310-609 97-351 (394)
9 2e0a_A Pyruvate dehydrogenase 100.0 5.3E-28 1.8E-32 261.1 25.6 218 310-609 97-351 (394)
10 2q8g_A [pyruvate dehydrogenase 100.0 3.9E-28 1.3E-32 263.2 22.2 155 447-609 191-364 (407)
11 1y8o_A [pyruvate dehydrogenase 100.0 5.8E-28 2E-32 262.9 21.3 150 448-609 202-375 (419)
12 1b3q_A Protein (chemotaxis pro 99.9 2.9E-23 1E-27 223.0 20.5 201 307-610 9-250 (379)
13 3a0y_A Sensor protein; ATP-LID 99.9 1.1E-22 3.9E-27 187.7 20.6 144 447-609 3-149 (152)
14 1id0_A PHOQ histidine kinase; 99.9 2E-22 6.7E-27 186.6 20.6 144 448-610 2-147 (152)
15 1ysr_A Sensor-type histidine k 99.9 7.9E-23 2.7E-27 189.3 17.8 144 446-608 4-149 (150)
16 3sl2_A Sensor histidine kinase 99.9 1.3E-22 4.6E-27 193.4 17.5 151 449-611 2-155 (177)
17 1bxd_A ENVZ(290-450), protein 99.9 5.1E-22 1.7E-26 186.2 17.4 146 446-611 6-153 (161)
18 3ehh_A Sensor kinase (YOCF pro 99.9 7.8E-21 2.7E-25 186.4 23.0 125 449-608 91-216 (218)
19 1r62_A Nitrogen regulation pro 99.9 6E-22 2E-26 184.2 13.9 142 447-608 5-159 (160)
20 1i58_A Chemotaxis protein CHEA 99.8 9.2E-21 3.1E-25 182.5 15.1 147 447-608 2-189 (189)
21 3zxo_A Redox sensor histidine 99.8 9.7E-18 3.3E-22 150.9 14.1 125 448-608 3-128 (129)
22 3ehg_A Sensor kinase (YOCF pro 99.7 2.3E-17 7.7E-22 149.1 15.1 124 450-608 2-126 (128)
23 3zxq_A Hypoxia sensor histidin 99.7 1.5E-16 5.1E-21 142.2 14.7 121 451-608 2-123 (124)
24 1th8_A Anti-sigma F factor; SP 99.6 3.9E-15 1.3E-19 137.0 11.6 103 487-610 35-141 (145)
25 1mu5_A Type II DNA topoisomera 99.5 4.3E-14 1.5E-18 155.2 10.7 115 484-608 25-148 (471)
26 2zbk_B Type 2 DNA topoisomeras 99.5 5E-14 1.7E-18 156.5 10.7 116 483-608 22-147 (530)
27 2q2e_B Type 2 DNA topoisomeras 99.3 9.4E-13 3.2E-17 148.3 4.9 117 484-608 30-154 (621)
28 1kij_A DNA gyrase subunit B; t 98.3 6.9E-07 2.3E-11 95.8 7.8 86 486-577 31-126 (390)
29 1h7s_A PMS1 protein homolog 2; 98.3 1.7E-06 6E-11 91.9 9.6 81 491-575 34-118 (365)
30 3ke6_A Protein RV1364C/MT1410; 98.3 1.2E-06 4E-11 94.4 8.0 90 489-609 295-387 (399)
31 1b63_A MUTL; DNA mismatch repa 98.0 1.5E-05 5E-10 83.7 9.6 80 491-574 24-107 (333)
32 3na3_A DNA mismatch repair pro 98.0 1.9E-05 6.5E-10 83.1 10.4 80 491-574 28-111 (348)
33 3zcc_A HAMP, osmolarity sensor 97.9 8E-05 2.7E-09 63.6 10.8 65 296-366 48-112 (114)
34 3h4l_A DNA mismatch repair pro 97.7 9E-05 3.1E-09 78.6 9.8 80 491-574 25-108 (367)
35 1ixm_A SPO0B, protein (sporula 97.6 0.00043 1.5E-08 66.8 12.5 74 469-547 87-170 (192)
36 3mmh_A FRMSR, methionine-R-sul 97.3 0.0023 7.9E-08 60.2 13.2 131 109-296 24-164 (167)
37 2wer_A ATP-dependent molecular 97.2 0.00013 4.6E-09 71.8 3.3 52 494-546 29-96 (220)
38 3o5y_A Sensor protein; GAF dom 97.1 0.003 1E-07 59.0 11.4 125 116-294 5-143 (165)
39 2zmf_A CAMP and CAMP-inhibited 97.1 0.003 1E-07 58.2 10.8 132 111-293 23-175 (189)
40 3trc_A Phosphoenolpyruvate-pro 97.0 0.0066 2.2E-07 54.9 12.6 131 111-294 17-161 (171)
41 3ksh_A Putative uncharacterize 97.0 0.0081 2.8E-07 56.1 12.9 99 109-220 24-133 (160)
42 3zrx_A AF1503 protein, osmolar 97.0 0.0037 1.3E-07 52.8 9.8 62 298-365 50-111 (115)
43 3oov_A Methyl-accepting chemot 97.0 0.02 6.8E-07 51.5 15.1 132 111-293 11-161 (169)
44 3e0y_A Conserved domain protei 96.9 0.0068 2.3E-07 55.2 11.4 133 110-297 23-169 (181)
45 1vhm_A Protein YEBR; structura 96.9 0.0071 2.4E-07 58.3 11.8 125 109-292 36-171 (195)
46 1qy5_A Endoplasmin; GRP94, NEC 96.8 0.00016 5.4E-09 73.5 -0.3 44 495-539 32-89 (269)
47 1s16_A Topoisomerase IV subuni 96.8 0.0033 1.1E-07 67.2 9.8 81 489-576 33-124 (390)
48 3hcy_A Putative two-component 96.8 0.0057 2E-07 54.7 9.8 129 114-295 1-140 (151)
49 3rfb_A Putative uncharacterize 96.8 0.0054 1.8E-07 57.9 9.6 99 109-220 25-134 (171)
50 3ci6_A Phosphoenolpyruvate-pro 96.7 0.017 5.7E-07 51.6 12.6 130 111-293 19-162 (171)
51 3p01_A Two-component response 96.6 0.0096 3.3E-07 55.5 10.6 128 111-293 39-178 (184)
52 3k2n_A Sigma-54-dependent tran 96.6 0.031 1.1E-06 50.9 13.9 133 111-297 15-169 (177)
53 2ior_A Chaperone protein HTPG; 96.6 0.00089 3E-08 66.6 3.1 50 494-546 50-117 (235)
54 1yc1_A HSP 86, heat shock prot 96.6 0.0014 4.9E-08 66.2 4.6 81 494-575 71-173 (264)
55 2e4s_A CAMP and CAMP-inhibited 96.6 0.012 4E-07 54.3 10.4 54 198-296 125-178 (189)
56 2w3g_A DOSS, two component sen 96.5 0.038 1.3E-06 48.6 13.2 126 113-293 3-144 (153)
57 4glq_A Methyl-accepting chemot 96.5 0.017 5.9E-07 54.1 11.1 33 111-144 6-38 (171)
58 2vjw_A GAF-B, GAF family prote 96.5 0.032 1.1E-06 50.8 12.5 52 200-296 85-136 (149)
59 1ei1_A DNA gyrase B, GYRB; ATP 96.2 0.013 4.5E-07 62.5 9.7 80 490-576 37-127 (391)
60 1mc0_A 3',5'-cyclic nucleotide 96.2 0.043 1.5E-06 56.7 13.3 100 113-220 24-137 (368)
61 3dba_A CONE CGMP-specific 3',5 96.1 0.024 8.3E-07 53.0 10.0 136 110-295 15-174 (180)
62 1f5m_A GAF; CGMP binding, sign 95.9 0.048 1.6E-06 51.6 11.2 101 109-220 34-151 (180)
63 2qyb_A Membrane protein, putat 95.8 0.067 2.3E-06 49.0 11.4 133 110-295 11-159 (181)
64 2lb5_A Sensor histidine kinase 95.4 0.26 8.9E-06 46.5 14.1 34 110-144 24-57 (208)
65 1pvg_A DNA topoisomerase II; G 95.3 0.037 1.3E-06 59.5 8.6 84 491-577 64-160 (418)
66 4duh_A DNA gyrase subunit B; s 95.2 0.024 8.1E-07 55.7 6.0 83 490-576 34-128 (220)
67 1ykd_A Adenylate cyclase; GAF 95.2 0.45 1.5E-05 49.6 16.4 97 117-220 27-141 (398)
68 3zq5_A Phytochrome-like protei 95.1 1.3 4.5E-05 48.7 20.2 30 114-144 150-179 (520)
69 1y4s_A Chaperone protein HTPG; 94.9 0.032 1.1E-06 62.1 6.9 43 494-539 30-88 (559)
70 2cg9_A ATP-dependent molecular 94.7 0.028 9.5E-07 63.8 5.7 42 495-539 30-87 (677)
71 1zxm_A TOPO IIA ATPase, DNA to 94.6 0.054 1.9E-06 57.8 7.5 82 490-575 51-146 (400)
72 3nhq_A Bacteriophytochrome; ph 94.6 1.1 3.7E-05 49.2 17.9 32 112-144 135-166 (505)
73 3ibj_A CGMP-dependent 3',5'-cy 94.5 0.47 1.6E-05 54.1 15.5 99 114-220 26-137 (691)
74 1ykd_A Adenylate cyclase; GAF 94.4 0.24 8.1E-06 51.8 12.0 149 114-296 212-378 (398)
75 3ibj_A CGMP-dependent 3',5'-cy 94.3 0.11 3.6E-06 59.4 9.5 155 114-322 194-365 (691)
76 3ttz_A DNA gyrase subunit B; p 94.2 0.082 2.8E-06 51.0 7.1 48 488-539 28-77 (198)
77 1mc0_A 3',5'-cyclic nucleotide 93.7 0.55 1.9E-05 48.2 12.9 124 115-294 195-337 (368)
78 4emv_A DNA topoisomerase IV, B 93.4 0.075 2.6E-06 52.3 5.2 46 490-539 39-86 (226)
79 2o1u_A Endoplasmin; GRP94, HSP 93.3 0.041 1.4E-06 62.4 3.6 43 494-539 48-106 (666)
80 2ool_A Sensor protein; bacteri 93.1 1.1 3.8E-05 46.5 13.8 32 112-144 157-188 (337)
81 3t0h_A Heat shock protein HSP 93.0 0.042 1.4E-06 54.3 2.6 45 494-539 35-93 (228)
82 3fv5_A DNA topoisomerase 4 sub 93.0 0.083 2.8E-06 51.0 4.7 43 493-539 19-63 (201)
83 3cit_A Sensor histidine kinase 92.7 1 3.6E-05 41.7 11.4 116 117-293 29-146 (160)
84 4eho_A Bacteriophytochrome, PA 92.4 1.8 6E-05 48.9 15.5 32 112-144 142-173 (635)
85 2gqp_A Endoplasmin; GRP94, HSP 92.1 0.067 2.3E-06 53.0 2.8 43 494-539 35-93 (236)
86 3cwv_A DNA gyrase, B subunit, 91.6 0.12 4.2E-06 54.6 4.3 47 488-538 27-75 (369)
87 2k2n_A Sensor protein, SYB-CPH 91.5 2 6.7E-05 39.0 12.1 26 118-144 2-27 (172)
88 3lnu_A Topoisomerase IV subuni 90.6 0.2 6.7E-06 53.6 4.7 83 489-577 52-144 (408)
89 4e04_A Bacteriophytochrome (li 90.5 2 6.9E-05 44.4 12.2 32 112-144 144-175 (327)
90 3s7o_A Bacteriophytochrome; bi 90.5 3 0.0001 43.4 13.4 32 112-144 162-193 (343)
91 4gfh_A DNA topoisomerase 2; to 90.2 0.33 1.1E-05 58.6 6.7 83 491-576 59-154 (1177)
92 3eea_A GAF domain/HD domain pr 89.1 3.7 0.00013 36.9 10.8 117 117-292 18-154 (162)
93 3o0i_A HSP90AA1 protein; HSP90 88.6 0.26 8.9E-06 49.3 3.5 45 494-539 63-121 (256)
94 3peh_A Endoplasmin homolog; st 87.7 0.32 1.1E-05 49.3 3.5 25 512-539 83-107 (281)
95 3nmq_A Heat shock protein HSP 85.9 0.46 1.6E-05 47.1 3.5 25 512-539 76-100 (239)
96 2ioq_A Chaperone protein HTPG; 85.4 0.56 1.9E-05 52.8 4.4 43 494-539 30-88 (624)
97 3bjc_A CGMP-specific 3',5'-cyc 77.9 0.45 1.5E-05 55.9 0.0 34 110-144 161-194 (878)
98 4eu0_A PELD; C-DI-GMP, signali 77.1 11 0.00039 38.2 10.2 90 117-220 24-124 (298)
99 3bjc_A CGMP-specific 3',5'-cyc 73.7 0.67 2.3E-05 54.4 0.0 32 112-144 345-376 (878)
100 3ied_A Heat shock protein; HSP 30.3 15 0.0005 36.7 1.0 25 512-539 120-144 (272)
101 2w1r_A Spovt, stage V sporulat 23.2 61 0.0021 28.0 3.6 22 199-220 75-96 (123)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=3.6e-33 Score=282.30 Aligned_cols=231 Identities=19% Similarity=0.274 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhh
Q 007012 300 LLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKR--SEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVR 377 (621)
Q Consensus 300 ~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~--~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~ 377 (621)
.+++....+.+|+++++|||||||++|.+++++|...... .+..+++++.|..++++|..+++++.+...+...
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~---- 87 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERK---- 87 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----
Confidence 3444555568999999999999999999999999875432 3455788999999999999999998653221000
Q ss_pred hhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHH
Q 007012 378 YNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLG 457 (621)
Q Consensus 378 ~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~ 457 (621)
......+++++.++++
T Consensus 88 ----------------------------------------------------------------~~~~~~~~~~l~~~~~ 103 (258)
T 2c2a_A 88 ----------------------------------------------------------------SLQINREKVDLCDLVE 103 (258)
T ss_dssp ----------------------------------------------------------------CCCCCCEEEEHHHHHH
T ss_pred ----------------------------------------------------------------CccCccceecHHHHHH
Confidence 0001246899999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEec-CCceEEEEcHHHHHHHHHHHHHHHHhhcCCC---CeEEEEEEEecCCeEEEEEEeCC
Q 007012 458 DLFEAVRPLAHMQQRQVELSEL-SQSLLVAVEEPALRQALSNLIEGALMRTQVG---GKVEIVSAAAPAGDALVVIDDDG 533 (621)
Q Consensus 458 ~~l~~~~~~a~~~~i~l~l~~~-~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~g---g~I~I~~~~~~~~~v~I~V~D~G 533 (621)
.++..+...+..+++.+.+... +.+..+.+|+..|.+||.|||+||+||++.+ +.|.|.+. ..++.+.|.|.|+|
T Consensus 104 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~-~~~~~~~i~V~D~G 182 (258)
T 2c2a_A 104 SAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVEDNG 182 (258)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEE-EETTEEEEEEEECS
T ss_pred HHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEe-cCCCeEEEEEEecC
Confidence 9999999999889999888763 4456789999999999999999999999765 46888874 45678999999999
Q ss_pred CCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 534 PDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 534 ~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
+||+++ +++|+|||+......... .|+||||+|||++++.|||+|++.+.+ +. ||+|+|+||....
T Consensus 183 ~Gi~~~~~~~if~~f~~~~~~~~~~~----~G~GLGL~i~~~iv~~~gG~i~v~s~~------~~-Gt~f~i~lP~~~~ 250 (258)
T 2c2a_A 183 IGIPDHAKDRIFEQFYRVDSSLTYEV----PGTGLGLAITKEIVELHGGRIWVESEV------GK-GSRFFVWIPKDRA 250 (258)
T ss_dssp SCCCGGGTTGGGSTTCCCC-------------CCCTHHHHHHHHHHTTCEEEEEEET------TT-EEEEEEEEECCC-
T ss_pred CCCCHHHHHhhccccccCCCCCCCCC----CCcchHHHHHHHHHHHcCCEEEEEecC------CC-CcEEEEEeeCCCC
Confidence 999998 999999998753322221 299999999999999999999999987 64 9999999998653
No 2
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=100.00 E-value=7.2e-31 Score=266.04 Aligned_cols=232 Identities=21% Similarity=0.247 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 007012 294 MDQKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKA 373 (621)
Q Consensus 294 l~qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~ 373 (621)
+.++.+.+++..+.++++++.++|||||||++|.++++++......++..++.++.|....+++.++++++.+...+...
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34555566666777789999999999999999999999998766666777888999999999999999988654220000
Q ss_pred hhhhhhHHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHH
Q 007012 374 NIVRYNEETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVS 453 (621)
Q Consensus 374 ~i~~~~~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~ 453 (621)
.......++++.
T Consensus 106 --------------------------------------------------------------------~~~~~~~~~~l~ 117 (268)
T 4ew8_A 106 --------------------------------------------------------------------EMALEIEDIRVS 117 (268)
T ss_dssp --------------------------------------------------------------------CCCCCCEEEEHH
T ss_pred --------------------------------------------------------------------CcceeeeeccHH
Confidence 001235789999
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCC
Q 007012 454 DVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDG 533 (621)
Q Consensus 454 elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G 533 (621)
+++..++..+...+..+++.+.+..+.....+.+|+..|.+|+.|||+||+||++.++.|.|.+. ..++.+.|.|.|+|
T Consensus 118 ~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~-~~~~~~~i~V~D~G 196 (268)
T 4ew8_A 118 DLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKRLAQTLDHLVENALRQTPPGGRVTLSAR-RALGEVRLDVSDTG 196 (268)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCTTSCEEEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEE-ECSSEEEEEEEESS
T ss_pred HHHHHHHHHHHhhhhccCceEEEEcCCCCceEecCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEE-ecCCEEEEEEEcCC
Confidence 99999999999998889999999886666689999999999999999999999998899999994 56688999999999
Q ss_pred CCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCCC
Q 007012 534 PDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAPL 611 (621)
Q Consensus 534 ~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~~ 611 (621)
+||+++ .++|++|++.. . .|+||||++||++++.|||+|++.+.+ +. ||+|+|.||.....
T Consensus 197 ~Gi~~~~~~~if~~~~~~~----~------~g~GlGL~i~~~~~~~~gG~i~i~s~~------~~-Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 197 RGVPFHVQAHIFDRFVGRD----R------GGPGLGLALVKALVELHGGWVALESEP------GN-GSTFTCHLPETQQP 259 (268)
T ss_dssp CCCCHHHHTTTTSTTCCCS----S------CCCTTHHHHHHHHHHHTTCEEEEEECT------TS-CEEEEEEEECCC--
T ss_pred CCCCHHHHHHHHHHHhcCC----C------CCCcccHHHHHHHHHHcCCEEEEEecC------CC-CEEEEEEecCCCCC
Confidence 999988 99999998532 1 299999999999999999999999987 64 99999999987643
No 3
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.97 E-value=1e-31 Score=263.67 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=126.1
Q ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhc
Q 007012 308 NNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMN 387 (621)
Q Consensus 308 ~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~ 387 (621)
+++|++.++|||||||++|.++++++.......+...++++.|....+++.++++++.+... +
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~--------~--------- 64 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSR--------L--------- 64 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHT--------C---------
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h---------
Confidence 57899999999999999999999998765544444455566677788888888888855311 0
Q ss_pred ccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHH
Q 007012 388 NSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLA 467 (621)
Q Consensus 388 ~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a 467 (621)
. ........+++++.++++.++..+...+
T Consensus 65 --------------------------------------------------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (222)
T 3jz3_A 65 --------------------------------------------------D-SLDNLQDVAEIPLEDLLQSSVMDIYHTA 93 (222)
T ss_dssp --------------------------------------------------C-CSTTSTTCEEEEHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------h-ccCCccCcccCCHHHHHHHHHHHHHHHH
Confidence 0 0000123578999999999999999999
Q ss_pred hhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCC
Q 007012 468 HMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTP 545 (621)
Q Consensus 468 ~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~ 545 (621)
..+++.+.+..+.....+.+|+..|.+||.|||+||+||++.++.|.|.+.. .. |.|.|+|+||+++ +++|++
T Consensus 94 ~~~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~~~---~~--i~V~D~G~Gi~~~~~~~if~~ 168 (222)
T 3jz3_A 94 QQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNA---DN--FIVRDNGPGVTPEALARIGER 168 (222)
T ss_dssp HHTTCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECS---SE--EEEECSCC-------------
T ss_pred HHhCCeEEEeeCCcceEEecCHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcc---Ce--EEEEECCCCCCHHHHHHHHhh
Confidence 9999999998866677899999999999999999999999998899998832 22 9999999999998 999999
Q ss_pred ccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 546 FGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 546 F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
|++..... ..|+||||+|||++++.|||+|++.+.+ + +||+|+++||..+.
T Consensus 169 f~~~~~~~-------~~g~GlGL~i~~~i~~~~gG~i~i~s~~------~-~Gt~v~~~~P~~~~ 219 (222)
T 3jz3_A 169 FYRPPGQT-------ATGSGLGLSIVQRIAKLHGMNVEFGNAE------Q-GGFEAKVSWLEHHH 219 (222)
T ss_dssp --------------------CTHHHHHHHHHHTTCEEECCBCT------T-SSBEEEEECCCC--
T ss_pred hccCCCCC-------CCcccccHHHHHHHHHHcCCEEEEEcCC------C-CcEEEEEeecCCCC
Confidence 99753221 1299999999999999999999999987 6 49999999998763
No 4
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.97 E-value=1.9e-30 Score=258.31 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHh
Q 007012 305 SWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLK 384 (621)
Q Consensus 305 ~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~ 384 (621)
....+++++.++|||||||++|.+++++|......++..+++++.+....+++.++++++.+
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~------------------ 72 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLT------------------ 72 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHS------------------
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34457889999999999999999999999876655556677888888888888888877721
Q ss_pred hhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHH
Q 007012 385 KMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVR 464 (621)
Q Consensus 385 ~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~ 464 (621)
+++......+++++..+++.++..+.
T Consensus 73 ------------------------------------------------------~~~~~~~~~~~~~l~~~l~~~~~~~~ 98 (244)
T 3d36_A 73 ------------------------------------------------------FAKPAPETPEKLNVKLEIERVIDILR 98 (244)
T ss_dssp ------------------------------------------------------SCCSSCCCCEEEEHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHhcccCCcchhhHHHHHHHHHHHHH
Confidence 22223335678999999999999999
Q ss_pred HHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--Ccc
Q 007012 465 PLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHS 542 (621)
Q Consensus 465 ~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~i 542 (621)
..+..+++.+.+.. .+..+.+|+..|.+||.|||+||++|++.++.|.|.+. ..++.+.|.|.|+|+||+++ +++
T Consensus 99 ~~~~~~~i~~~~~~--~~~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~-~~~~~~~i~i~D~G~gi~~~~~~~i 175 (244)
T 3d36_A 99 PLANMSCVDIQATL--APFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVS-IDNGRVLIRIADTGVGMTKEQLERL 175 (244)
T ss_dssp HHHTTTTEEEEEEC--CCCEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEE-EETTEEEEEEEECSSCCCHHHHHHT
T ss_pred HHHHhcCeEEeccC--CCceEEeCHHHHHHHHHHHHHHHHHhccCCCeEEEEEE-EeCCEEEEEEEecCCCCCHHHHHHH
Confidence 98887777777665 33678999999999999999999999988899999985 45688999999999999988 999
Q ss_pred cCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 543 LTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 543 Fe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
|++|++... . .|+|+||++||++++.|||+|++.+.+ + +|++|+|+||....
T Consensus 176 f~~~~~~~~----~-----~g~GlGL~i~~~i~~~~gG~i~~~~~~------~-~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 176 GEPYFTTKG----V-----KGTGLGMMVVYRIIESMNGTIRIESEI------H-KGTTVSIYLPLASS 227 (244)
T ss_dssp TSTTCCSSG----G-----GCCSCHHHHHHHHHHHTTCEEEEEEET------T-TEEEEEEEEECCC-
T ss_pred hcccccCCC----C-----CCcchhHHHHHHHHHHcCCEEEEEecC------C-CcEEEEEEecCCCC
Confidence 999986431 1 289999999999999999999999976 5 49999999998754
No 5
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.97 E-value=1.4e-29 Score=265.55 Aligned_cols=213 Identities=16% Similarity=0.221 Sum_probs=178.9
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 007012 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (621)
Q Consensus 307 q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i 386 (621)
..+++++.++|||||||++|.+++++|......++...++++.|....+++.++++++.+... .
T Consensus 131 ~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~---~------------- 194 (349)
T 3a0r_A 131 ILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSK---E------------- 194 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C-------------
Confidence 357899999999999999999999999887766666678899999999999999988854311 0
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 007012 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (621)
Q Consensus 387 ~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~ 466 (621)
. ......++++.++++.++..+...
T Consensus 195 ---------------------------------------------------~----~~~~~~~~~l~~~~~~~~~~~~~~ 219 (349)
T 3a0r_A 195 ---------------------------------------------------R----QVLEFTEFNLNELIREVYVLFEEK 219 (349)
T ss_dssp ---------------------------------------------------C-----CEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------c----cccCCcccCHHHHHHHHHHHHHHH
Confidence 0 001246799999999999999999
Q ss_pred HhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccC
Q 007012 467 AHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLT 544 (621)
Q Consensus 467 a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe 544 (621)
+..+++.+.+..+.....+.+|+..|.+||.|||.||+||++.++.|.|.+. ..++.+.|.|.|+|+||+++ +++|+
T Consensus 220 ~~~~~i~~~~~~~~~~~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~-~~~~~~~i~v~D~G~Gi~~~~~~~if~ 298 (349)
T 3a0r_A 220 IRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSE-DMYTKVRVSVWNSGPPIPEELKEKIFS 298 (349)
T ss_dssp HTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEE-EETTEEEEEEEEESCCCCGGGGTTTSS
T ss_pred HHHcCcEEEEecCCCCceEEeCHHHHHHHHHHHHHHHHHhccCCCEEEEEEE-ecCCEEEEEEEECCCCCChHHHhhcCC
Confidence 8888999988876667789999999999999999999999988899999985 45678999999999999998 99999
Q ss_pred CccccccccccccCCCCCCccchHHHHHHHHH-HcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 545 PFGSELFSENMVEDNMTWNFVAGLTVARELLE-SYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 545 ~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve-~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
||++.. . .|+||||+|||++++ .|||.+++.+.+ +||+|+|.||...
T Consensus 299 ~f~~~~----~------~g~GlGL~i~~~~v~~~~gg~i~~~~~~--------~Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 299 PFFTTK----T------QGTGLGLSICRKIIEDEHGGKIWTENRE--------NGVVFIFEIPKTP 346 (349)
T ss_dssp SCCCC----------------CCCTHHHHHHHHTTCSBCCEEECS--------SEEEEEEEEESCT
T ss_pred CCccCC----C------CCccchHHHHHHHHHHhCCCEEEEEeCC--------CcEEEEEEecCCC
Confidence 999642 1 299999999999999 899999998864 5999999999865
No 6
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.96 E-value=3.4e-29 Score=253.48 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=143.7
Q ss_pred HHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhhcccC
Q 007012 311 RMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKMNNSA 390 (621)
Q Consensus 311 ~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i~~s~ 390 (621)
+.++++|||||||++|++++++|.... .++...++++.|.++++++.++++.+.-.
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~~~-~~~~~~~~l~~I~~~~~~~~~ll~~~r~~----------------------- 104 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLEDPS-AQDMRDDAMNLIASSARKLADLLQFTRVA----------------------- 104 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-CGGGHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 567899999999999999999987653 33445667788888888887777543110
Q ss_pred CCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHHHhhc
Q 007012 391 YSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPLAHMQ 470 (621)
Q Consensus 391 ~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~a~~~ 470 (621)
.. ......++++.++.. .+...+..+
T Consensus 105 ------------------------------------------------~~--~~~~~~~~~~~~l~~----~~~~~~~~~ 130 (247)
T 4fpp_A 105 ------------------------------------------------FG--ASASAENFDSRELEK----LAQGVFAHV 130 (247)
T ss_dssp ------------------------------------------------TT--CCSSCCCEEHHHHHH----HHHHHHTTS
T ss_pred ------------------------------------------------hc--cccccccccHHHHHH----HHHHHHHhh
Confidence 00 001124566666543 334445557
Q ss_pred CCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC----CcccCCc
Q 007012 471 QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM----MHSLTPF 546 (621)
Q Consensus 471 ~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e----~~iFe~F 546 (621)
++.+.+..+... .+..+.|++.||+.||+||++.|+.|.|.+. ..++.+.|.|.|+|+||+.+ +++|++|
T Consensus 131 ~i~l~~~~~~~~-----~~~~~~qvl~NLl~NA~~a~~~gg~I~v~~~-~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~ 204 (247)
T 4fpp_A 131 RPTLDWQIEPQA-----MNKPSSRAVLNIAQIAASALPAGGVATVKGV-AADGRFSIIADAKGPRARLRPEVLAGLKGEP 204 (247)
T ss_dssp SSEEEECCCSCE-----ECHHHHHHHHHHHHHHHTTCTTCCEEEEEEE-EETTEEEEEEEEESTTCCCCHHHHHHHTTCC
T ss_pred hhhccccccchh-----hhHHHHHHHHHHHHHHHHhcCCCCeEEEEEE-EECCEEEEEEEEcCCCCCCCHHHHHHhcCCC
Confidence 777776553221 2467899999999999999999999999995 46688999999999986543 5666665
Q ss_pred cccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 547 GSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 547 ~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
++. +. .|+||||+|||+|++.|||+|++++.+ +|++|+++||.
T Consensus 205 ~~~----~~------~G~GLGLai~~~iv~~hGG~i~v~s~~--------~G~~f~v~LPA 247 (247)
T 4fpp_A 205 LAE----GL------GGPWVQAAYLNALVRAAGGQIAVEIGE--------DRASIAAWVPA 247 (247)
T ss_dssp CCS----SC------HHHHHHHHHHHHHHHHTTCEEEEEEET--------TEEEEEEEEEC
T ss_pred CCC----CC------CCccHHHHHHHHHHHHcCCEEEEEEcC--------CEEEEEEEecC
Confidence 532 21 299999999999999999999999865 59999999994
No 7
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.96 E-value=3.1e-28 Score=262.17 Aligned_cols=225 Identities=15% Similarity=0.106 Sum_probs=175.6
Q ss_pred HHHHHHHHHHhHHHHHhHHHHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Q 007012 305 SWQNNARMSNLVEQIRGPLSSIQ-TLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETL 383 (621)
Q Consensus 305 ~~q~~~~la~lsHELRtPLtaI~-~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l 383 (621)
..+..+++++++||+||||++|. ++.+++ +....++..+++++.|..+..+|..+++++.+.
T Consensus 118 ~~~~~~~l~~i~helrtpL~~i~~g~~~l~-~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l---------------- 180 (388)
T 1gkz_A 118 EAQYCQLVRQLLDDHKDVVTLLAEGLRESR-KHIEDEKLVRYFLDKTLTSRLGIRMLATHHLAL---------------- 180 (388)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHSS-SSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 34457899999999999999999 555443 333435566788999999999999999988431
Q ss_pred hhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCC----CCceeeeHHHHHHHH
Q 007012 384 KKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQ----NGIRPCNVSDVLGDL 459 (621)
Q Consensus 384 ~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~----~~~~~v~L~elL~~~ 459 (621)
++.+. ...++|++.++++++
T Consensus 181 --------------------------------------------------------~~~~~~~~~~~~~~~~l~~li~~~ 204 (388)
T 1gkz_A 181 --------------------------------------------------------HEDKPDFVGIICTRLSPKKIIEKW 204 (388)
T ss_dssp --------------------------------------------------------TSCCTTEETTEEEEECHHHHHHHH
T ss_pred --------------------------------------------------------hccCCCccceecCCCCHHHHHHHH
Confidence 11111 124789999999999
Q ss_pred HHHHHHHHhhc---CCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCC--------eEEEEEEEecCCeEEEE
Q 007012 460 FEAVRPLAHMQ---QRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGG--------KVEIVSAAAPAGDALVV 528 (621)
Q Consensus 460 l~~~~~~a~~~---~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg--------~I~I~~~~~~~~~v~I~ 528 (621)
+..+...+..+ ...+.+.. ..+..+.+|+..|.+||.|||+||+||++.++ .|.|.+. ..++.+.|.
T Consensus 205 ~~~~~~~~~~~~g~~~~i~i~~-~~~~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~-~~~~~v~i~ 282 (388)
T 1gkz_A 205 VDFARRLCEHKYGNAPRVRING-HVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA-NNDVDLIIR 282 (388)
T ss_dssp HHHHHHHHHHHHSCCCCEEEEE-STTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE-ECSSEEEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEEc-cCCCceeecHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEE-eCCCEEEEE
Confidence 99999988877 33555554 33456889999999999999999999998765 8999984 466789999
Q ss_pred EEeCCCCCCCC--CcccCCccccccccccc----------------cCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCc
Q 007012 529 IDDDGPDMHYM--MHSLTPFGSELFSENMV----------------EDNMTWNFVAGLTVARELLESYGCVVRVISPWKT 590 (621)
Q Consensus 529 V~D~G~GI~~e--~~iFe~F~~~~~s~~~~----------------~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~ 590 (621)
|.|+|+||+++ +++|++||+........ ......|+||||+|||.+++.|||+|++.|.+
T Consensus 283 V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~-- 360 (388)
T 1gkz_A 283 ISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ-- 360 (388)
T ss_dssp EECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEET--
T ss_pred EEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecC--
Confidence 99999999998 99999999875422100 00011399999999999999999999999987
Q ss_pred cCCCCCCeeEEEEEecCCCCC
Q 007012 591 DAALGSGGTRVELWLPSPAPL 611 (621)
Q Consensus 591 ~~~~g~~Gt~f~l~LP~~~~~ 611 (621)
|. ||+|+|+||.....
T Consensus 361 ----g~-Gt~f~i~LP~~~~~ 376 (388)
T 1gkz_A 361 ----GI-GTDVYLRLRHIDGR 376 (388)
T ss_dssp ----TT-EEEEEEEEECSSSC
T ss_pred ----CC-cEEEEEEecCCCCC
Confidence 75 99999999987644
No 8
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.96 E-value=2.4e-28 Score=263.65 Aligned_cols=219 Identities=16% Similarity=0.165 Sum_probs=164.7
Q ss_pred HHHHHhHHHHHh-----HHHHHHHHHHHHHhhcCCC---cchHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Q 007012 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMKRS---EISYDIVE--DIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (621)
Q Consensus 310 ~~la~lsHELRt-----PLtaI~~~~~lL~~~l~~~---~~~~~~~e--~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~ 379 (621)
+++++++||||| ||+.|+++.+++....... +....+++ .+.+.+.|| +++++.+... .
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~---~------ 165 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFD---G------ 165 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC----------
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhc---c------
Confidence 478899999999 9999999999876542221 11222444 366677777 7777643200 0
Q ss_pred HHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCc----eeeeHHHH
Q 007012 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI----RPCNVSDV 455 (621)
Q Consensus 380 ~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~----~~v~L~el 455 (621)
. . ........ +++++.++
T Consensus 166 -----------------------------~---------------~--------------~~~~~~~~g~i~~~~~l~~l 187 (394)
T 2btz_A 166 -----------------------------S---------------T--------------NPAHPKHIGSIDPNCNVSEV 187 (394)
T ss_dssp -----------------------------------------------------------------CCBTTBEEEEEHHHH
T ss_pred -----------------------------c---------------c--------------cCCCCcccceecCCCCHHHH
Confidence 0 0 00000113 68999999
Q ss_pred HHHHHHHHHHHHhh-----cCCeEEEEe---cCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCC-------eEEEEEEEe
Q 007012 456 LGDLFEAVRPLAHM-----QQRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-------KVEIVSAAA 520 (621)
Q Consensus 456 L~~~l~~~~~~a~~-----~~i~l~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg-------~I~I~~~~~ 520 (621)
+++++..+...+.. +++.+.+.. +..+..+.+|+..|.+||.|||+||+||++.++ .|.|.+. .
T Consensus 188 i~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~-~ 266 (394)
T 2btz_A 188 VKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVA-L 266 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEE-E
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEE-e
Confidence 99999999998876 777777643 356678999999999999999999999998876 6999984 4
Q ss_pred cCCeEEEEEEeCCCCCCCC--CcccCCccccccc-----cccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCC
Q 007012 521 PAGDALVVIDDDGPDMHYM--MHSLTPFGSELFS-----ENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593 (621)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s-----~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~ 593 (621)
.++.+.|.|.|+|+||+++ +++|++||+.... .... ..|+||||+|||.+++.|||+|++.|.+
T Consensus 267 ~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~----~~G~GLGL~i~~~i~~~~gG~i~v~s~~----- 337 (394)
T 2btz_A 267 GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTP----LAGFGYGLPISRLYAKYFQGDLQLFSME----- 337 (394)
T ss_dssp CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------------------CCHHHHHHHHHHHTTCEEEEEEET-----
T ss_pred CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCC----CCCccCCHHHHHHHHHHhCCEEEEEecC-----
Confidence 6678999999999999998 9999999987543 1111 1399999999999999999999999987
Q ss_pred CCCCeeEEEEEecCCC
Q 007012 594 LGSGGTRVELWLPSPA 609 (621)
Q Consensus 594 ~g~~Gt~f~l~LP~~~ 609 (621)
+. ||+|+|+||...
T Consensus 338 -g~-Gt~f~i~lP~~~ 351 (394)
T 2btz_A 338 -GF-GTDAVIYLKALS 351 (394)
T ss_dssp -TT-EEEEEEEEESST
T ss_pred -CC-ceEEEEEecCCC
Confidence 64 999999999875
No 9
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.96 E-value=5.3e-28 Score=261.09 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=169.5
Q ss_pred HHHHHhHHHHHh-----HHHHHHHHHHHHHhhcCC---CcchHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhh
Q 007012 310 ARMSNLVEQIRG-----PLSSIQTLSKMLSLHMKR---SEISYDIVE--DIMVQGDRLRGTLQELQDAVFLTKANIVRYN 379 (621)
Q Consensus 310 ~~la~lsHELRt-----PLtaI~~~~~lL~~~l~~---~~~~~~~~e--~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~ 379 (621)
+++++++||||| ||+.|+++++++...... .+..+.+++ .|.+.+.|| +++++.+...
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~---------- 164 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFS---------- 164 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhh----------
Confidence 478889999999 999999999966543211 223355566 577788888 7777643111
Q ss_pred HHHHhhhcccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCc----eeeeHHHH
Q 007012 380 EETLKKMNNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGI----RPCNVSDV 455 (621)
Q Consensus 380 ~e~l~~i~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~----~~v~L~el 455 (621)
+ ......... +++++.++
T Consensus 165 ---------------~-------------------------------------------~~~~~~~~~g~i~~~~~l~~l 186 (394)
T 2e0a_A 165 ---------------D-------------------------------------------SQTGNPSHIGSIDPNCDVVAV 186 (394)
T ss_dssp ---------------S-------------------------------------------SCCCCTTSBTTBEEEEEHHHH
T ss_pred ---------------c-------------------------------------------ccCCCCCccccccCCCCHHHH
Confidence 0 000000112 68999999
Q ss_pred HHHHHHHHHHHHhhc-----CCeEEEEe---cCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCC-------eEEEEEEEe
Q 007012 456 LGDLFEAVRPLAHMQ-----QRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-------KVEIVSAAA 520 (621)
Q Consensus 456 L~~~l~~~~~~a~~~-----~i~l~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg-------~I~I~~~~~ 520 (621)
+++++..+...+..+ ++.+.+.. +..+..+.+|+..|.+||.|||+||+||++.++ .|.|.+. .
T Consensus 187 l~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~-~ 265 (394)
T 2e0a_A 187 VQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVV-L 265 (394)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEE-E
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEE-e
Confidence 999999999998877 88877742 356678999999999999999999999998766 6999984 4
Q ss_pred cCCeEEEEEEeCCCCCCCC--CcccCCccccccc------cccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccC
Q 007012 521 PAGDALVVIDDDGPDMHYM--MHSLTPFGSELFS------ENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDA 592 (621)
Q Consensus 521 ~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s------~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~ 592 (621)
.++.+.|.|.|+|+||+++ +++|++||+.... .... ..|+||||+|||.+++.|||+|++.+.+
T Consensus 266 ~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~----~~G~GLGL~i~~~i~~~~gG~i~v~s~~---- 337 (394)
T 2e0a_A 266 GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAP----LAGFGYGLPISRLYAKYFQGDLNLYSLS---- 337 (394)
T ss_dssp CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCC----SSCSSCHHHHHHHHHHHTTCEEEEEEET----
T ss_pred CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCC----CCCcccCHHHHHHHHHHhCCEEEEEecC----
Confidence 6678999999999999998 9999999987543 1111 1399999999999999999999999987
Q ss_pred CCCCCeeEEEEEecCCC
Q 007012 593 ALGSGGTRVELWLPSPA 609 (621)
Q Consensus 593 ~~g~~Gt~f~l~LP~~~ 609 (621)
+. ||+|+|+||...
T Consensus 338 --g~-Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 338 --GY-GTDAIIYLKALS 351 (394)
T ss_dssp --TT-EEEEEEEEESSG
T ss_pred --Cc-cEEEEEEeCCCC
Confidence 64 999999999865
No 10
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.96 E-value=3.9e-28 Score=263.23 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=130.7
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhc-----CCeEEEEe---cCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCC-------
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQ-----QRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG------- 511 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~-----~i~l~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg------- 511 (621)
.++|++.+++++++..+...+..+ ++.+.+.. +..+..+.+|+..|.+||.|||+||+||++.++
T Consensus 191 ~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~~ 270 (407)
T 2q8g_A 191 NPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEHHANRGVYP 270 (407)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHSTTTCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Confidence 568999999999999999998876 78777765 456678999999999999999999999998766
Q ss_pred eEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccc--cCCCCCCccchHHHHHHHHHHcCCEEEEEeC
Q 007012 512 KVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMV--EDNMTWNFVAGLTVARELLESYGCVVRVISP 587 (621)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~--~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~ 587 (621)
.|.|.+. ..++.+.|.|.|+|+||+++ +++|++||+........ ......|+||||+|||.+++.|||+|++.|.
T Consensus 271 ~I~I~~~-~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~ 349 (407)
T 2q8g_A 271 PIQVHVT-LGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSL 349 (407)
T ss_dssp CEEEEEE-ECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEE-eCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEc
Confidence 7999984 46678999999999999998 99999999876431000 0001139999999999999999999999998
Q ss_pred CCccCCCCCCeeEEEEEecCCC
Q 007012 588 WKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 588 ~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+ +. ||+|+|+||...
T Consensus 350 ~------g~-Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 350 E------GY-GTDAVIYIKALS 364 (407)
T ss_dssp T------TT-EEEEEEEEESSG
T ss_pred C------CC-ceEEEEEECCCC
Confidence 7 64 999999999865
No 11
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.96 E-value=5.8e-28 Score=262.91 Aligned_cols=150 Identities=20% Similarity=0.192 Sum_probs=124.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHhh-----cCCeEEEEe---cCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCC--------
Q 007012 448 RPCNVSDVLGDLFEAVRPLAHM-----QQRQVELSE---LSQSLLVAVEEPALRQALSNLIEGALMRTQVGG-------- 511 (621)
Q Consensus 448 ~~v~L~elL~~~l~~~~~~a~~-----~~i~l~l~~---~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg-------- 511 (621)
+++++.+++++++..++..+.. +++.+.+.. +..+..+.+|+..|.+||.|||+||+||++.++
T Consensus 202 ~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~~~~~~ 281 (419)
T 1y8o_A 202 PTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYP 281 (419)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Confidence 7899999999999999988876 677777643 255678999999999999999999999998754
Q ss_pred eEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccc------cccccCCCCCCccchHHHHHHHHHHcCCEEE
Q 007012 512 KVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFS------ENMVEDNMTWNFVAGLTVARELLESYGCVVR 583 (621)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s------~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~ 583 (621)
.|.|.+. ..++.+.|.|.|+|+||+++ +++|++||+.... .... ..|+||||+|||.+++.|||+|+
T Consensus 282 ~I~I~~~-~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~----~~G~GLGL~I~k~iv~~~gG~I~ 356 (419)
T 1y8o_A 282 AVKTLVT-LGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAP----LAGFGYGLPISRLYARYFQGDLK 356 (419)
T ss_dssp CEEEEEE-ECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------C----C--CTTHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEE-eCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCC----cCCeecCHHHHHHHHHHhCCEEE
Confidence 7999884 45678999999999999998 9999999987543 1111 23999999999999999999999
Q ss_pred EEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 584 VISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 584 v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+.|.+ +. ||+|+|+||...
T Consensus 357 v~s~~------g~-Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 357 LYSME------GV-GTDAVIYLKALS 375 (419)
T ss_dssp EEEET------TT-EEEEEEEEESCG
T ss_pred EEecC------CC-CEEEEEEecCCC
Confidence 99987 64 999999999865
No 12
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.90 E-value=2.9e-23 Score=223.03 Aligned_cols=201 Identities=18% Similarity=0.208 Sum_probs=153.5
Q ss_pred HHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHhhh
Q 007012 307 QNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQDAVFLTKANIVRYNEETLKKM 386 (621)
Q Consensus 307 q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~~i~l~~~~i~~~~~e~l~~i 386 (621)
.+.+++.+++||||+|++.|.++.+.+.. +.+....++|..+++++.+...
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~------------~~i~~~~~~l~~l~~~l~~~~~----------------- 59 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI------------KELDESLSHLSRITLDLQNVVM----------------- 59 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC------------HHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 35689999999999999999876654321 4566777888888888865321
Q ss_pred cccCCCCchhhhhhccccccccccccccccCCCCCCCCCCccccCCCCCccccCcCCCCCceeeeHHHHHHHHHHHHHHH
Q 007012 387 NNSAYSHPESIRSQLSNNFSRENSGNKLQNSCKPLSLDTPAKDIEMPMPPLALAPLKQNGIRPCNVSDVLGDLFEAVRPL 466 (621)
Q Consensus 387 ~~s~~~~~~~lr~~L~~~~~~~~~~n~~~~~~~~l~l~~~~~d~~~~~ppL~la~~e~~~~~~v~L~elL~~~l~~~~~~ 466 (621)
..+.+++..++..+...++..
T Consensus 60 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 80 (379)
T 1b3q_A 60 -----------------------------------------------------------KIRMVPISFVFNRFPRMVRDL 80 (379)
T ss_dssp -----------------------------------------------------------HHHEEETHHHHTTHHHHHHHH
T ss_pred -----------------------------------------------------------HcceecHHHHHHHHHHHHHHH
Confidence 123567788888888888888
Q ss_pred HhhcCCeEEEEecCCceEEEEcHHHH---HHHHHHHHHHHHhhc------------CCCCeEEEEEEEecCCeEEEEEEe
Q 007012 467 AHMQQRQVELSELSQSLLVAVEEPAL---RQALSNLIEGALMRT------------QVGGKVEIVSAAAPAGDALVVIDD 531 (621)
Q Consensus 467 a~~~~i~l~l~~~~~~~~V~~D~~~L---~qVL~NLL~NAlk~t------------~~gg~I~I~~~~~~~~~v~I~V~D 531 (621)
+...+..+++...... +..|+..+ .++|.|||.||+||+ +.++.|.|.+. ..++.+.|.|.|
T Consensus 81 ~~~~~~~v~l~~~~~~--~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~-~~~~~v~i~V~D 157 (379)
T 1b3q_A 81 AKKMNKEVNFIMRGED--TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSAR-HEGNNVVIEVED 157 (379)
T ss_dssp HHHTTCCEEEEEECTT--CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEE-EETTEEEEEEEE
T ss_pred HHHhCCeEEEEEcCCC--eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEE-EeCCEEEEEEEE
Confidence 8888888888764333 45677655 455999999999997 67789999995 456889999999
Q ss_pred CCCCCCCC--------------------------CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEE
Q 007012 532 DGPDMHYM--------------------------MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVI 585 (621)
Q Consensus 532 ~G~GI~~e--------------------------~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~ 585 (621)
+|+||+++ +++|+|||+....... .+|+|+||++||++++.|||+|++.
T Consensus 158 ~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~~-----~~G~GlGL~iv~~~v~~~gG~i~v~ 232 (379)
T 1b3q_A 158 DGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSE-----VSGRGVGMDVVKNVVESLNGSMGIE 232 (379)
T ss_dssp CSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC----------------CCCSHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccCC-----CCCccccHHHHHHHHHHCCCEEEEE
Confidence 99999976 4699999876422111 1399999999999999999999999
Q ss_pred eCCCccCCCCCCeeEEEEEecCCCC
Q 007012 586 SPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 586 S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
|.+ +. ||+|+++||...+
T Consensus 233 s~~------g~-Gt~f~i~lPl~~~ 250 (379)
T 1b3q_A 233 SEK------DK-GTKVTIRLPLTLA 250 (379)
T ss_dssp EET------TT-EEEEEEEEESSCE
T ss_pred EcC------CC-CeEEEeccCCccc
Confidence 987 75 9999999998753
No 13
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.90 E-value=1.1e-22 Score=187.72 Aligned_cols=144 Identities=17% Similarity=0.252 Sum_probs=128.9
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEE
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~ 526 (621)
.+++++.+++++++..+...+..+++.+.++.+.....+.+|+..|.+|+.|||+||+||++.++.|.|.+. ..++.+.
T Consensus 3 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~d~~~l~~il~nll~NAi~~~~~~~~I~i~~~-~~~~~~~ 81 (152)
T 3a0y_A 3 FTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSE-DMYTKVR 81 (152)
T ss_dssp CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE-ECSSEEE
T ss_pred cEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCCcEEEECHHHHHHHHHHHHHHHHHhcCCCCEEEEEEE-ecCCEEE
Confidence 468999999999999999999999999999886667789999999999999999999999988899999984 4667899
Q ss_pred EEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHH-HcCCEEEEEeCCCccCCCCCCeeEEEE
Q 007012 527 VVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLE-SYGCVVRVISPWKTDAALGSGGTRVEL 603 (621)
Q Consensus 527 I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve-~~GG~I~v~S~~~~~~~~g~~Gt~f~l 603 (621)
|.|.|+|+||+++ +++|++|++.. . .|+||||++||++++ .|||.+.+.+.+ +|++|++
T Consensus 82 i~i~D~G~g~~~~~~~~~f~~~~~~~----~------~g~GlGL~i~~~~~~~~~gg~~~~~~~~--------~g~~~~i 143 (152)
T 3a0y_A 82 VSVWNSGPPIPEELKEKIFSPFFTTK----T------QGTGLGLSICRKIIEDEHGGKIWTENRE--------NGVVFIF 143 (152)
T ss_dssp EEEEEESCCCCGGGTTGGGSTTCCCC------------CCCCSHHHHHHHHHTTTSCEEEEEEET--------TEEEEEE
T ss_pred EEEEeCCCCcCHHHHHhHhhhhccCC----C------CCCCcCHHHHHHHHHHhCCcEEEEecCC--------CCEEEEE
Confidence 9999999999988 99999998642 1 289999999999999 999999998864 5999999
Q ss_pred EecCCC
Q 007012 604 WLPSPA 609 (621)
Q Consensus 604 ~LP~~~ 609 (621)
.||...
T Consensus 144 ~lP~~~ 149 (152)
T 3a0y_A 144 EIPKTP 149 (152)
T ss_dssp EEESCC
T ss_pred EeCCCC
Confidence 999865
No 14
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.90 E-value=2e-22 Score=186.58 Aligned_cols=144 Identities=19% Similarity=0.202 Sum_probs=125.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 007012 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (621)
Q Consensus 448 ~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (621)
+++++.+++++++..+...+..+++.+.++.+. ...+.+|+..|.+|+.|||+||+||++. .|.|.+. ..++.+.|
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~d~~~l~~il~nLl~NAi~~~~~--~i~i~~~-~~~~~~~i 77 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISP-EISFVGEQNDFVEVMGNVLDNACKYCLE--FVEISAR-QTDEHLYI 77 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCT-TCEEESCHHHHHHHHHHHHHHHHHHCSS--EEEEEEE-ECSSCEEE
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCC-CceEeeCHHHHHHHHHHHHHHHHHhCcC--eEEEEEE-ecCCEEEE
Confidence 579999999999999999999899999888743 3568999999999999999999999975 7888884 45678999
Q ss_pred EEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEe
Q 007012 528 VIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605 (621)
Q Consensus 528 ~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~L 605 (621)
.|.|+|+||+++ +++|++|++..... .|+||||++||++++.|||+|++.+.+ + +|++|+++|
T Consensus 78 ~i~D~G~gi~~~~~~~~f~~~~~~~~~~--------~g~GlGL~i~~~~~~~~gG~i~~~~~~------~-~G~~~~i~l 142 (152)
T 1id0_A 78 VVEDDGPGIPLSKREVIFDRGQRVDTLR--------PGQGVGLAVAREITEQYEGKIVAGESM------L-GGARMEVIF 142 (152)
T ss_dssp EEEESSSCCCGGGTTGGGSCCCCTTCCC--------TTCCSCHHHHHHHHHHTTCEEEEEECT------T-SSEEEEEEE
T ss_pred EEEeCCCCcCHHHHHHHhccceeccCCC--------CCcccCHHHHHHHHHHcCCEEEEEeCC------C-CcEEEEEEE
Confidence 999999999998 99999999764221 299999999999999999999999876 5 499999999
Q ss_pred cCCCC
Q 007012 606 PSPAP 610 (621)
Q Consensus 606 P~~~~ 610 (621)
|....
T Consensus 143 P~~~~ 147 (152)
T 1id0_A 143 GRQHS 147 (152)
T ss_dssp CCCC-
T ss_pred ecccc
Confidence 99764
No 15
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.90 E-value=7.9e-23 Score=189.26 Aligned_cols=144 Identities=19% Similarity=0.229 Sum_probs=117.6
Q ss_pred CceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeE
Q 007012 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (621)
Q Consensus 446 ~~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v 525 (621)
..+++++.+++++++..+...+ +++.+.++. +.+..+.+|+..|.+|+.|||+||+||++.+ .|.|.+. ..++.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~~-~~~~~~~~d~~~l~~il~nLl~NA~~~~~~~-~I~i~~~-~~~~~~ 78 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIY--PDLDVSLVP-SPTCIIVGLPAGLRLAVDNAIANAVKHGGAT-LVQLSAV-SSRAGV 78 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHS--TTCEEEECS-CCCCEEEECHHHHHHHHHHHHHHHHHTTCCS-EEEEEEE-EETTEE
T ss_pred cccccCHHHHHHHHHHHHHHhc--cCCceEEcc-CCCceEecCHHHHHHHHHHHHHHHHhcCCCc-EEEEEEE-ecCCEE
Confidence 3578999999999999998765 567777765 3556899999999999999999999999875 8999885 456789
Q ss_pred EEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEE
Q 007012 526 LVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 603 (621)
Q Consensus 526 ~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l 603 (621)
.|.|.|+|+||+++ +++|++|++...+.. .|+||||++||++++.|||+|++.+.+ +. |++|+|
T Consensus 79 ~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~-------~g~GlGL~i~~~~~~~~gG~i~~~~~~------~~-G~~~~i 144 (150)
T 1ysr_A 79 EIAIDDNGSGVPEGERQVVFERFSRGSTASH-------SGSGLGLALVAQQAQLHGGTASLENSP------LG-GARLVL 144 (150)
T ss_dssp EEEEEESSSCCCGGGHHHHHTSCC------------------CCCHHHHHHHHHTTCEEEEEECT------TS-SEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHhcccccCCCCCC-------CCCCcCHHHHHHHHHHcCCEEEEeecC------CC-CEEEEE
Confidence 99999999999998 999999997642221 299999999999999999999999976 54 999999
Q ss_pred EecCC
Q 007012 604 WLPSP 608 (621)
Q Consensus 604 ~LP~~ 608 (621)
.||..
T Consensus 145 ~lP~~ 149 (150)
T 1ysr_A 145 RLPGP 149 (150)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99974
No 16
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.89 E-value=1.3e-22 Score=193.36 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=124.7
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEE-EecCCeEEE
Q 007012 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSA-AAPAGDALV 527 (621)
Q Consensus 449 ~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~-~~~~~~v~I 527 (621)
+++|.++++.++..+... ..+++.+.+..+.....+.+|+..|.+||.|||+||++|++.++.|.|.+. ...++.+.|
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i 80 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYI 80 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSCCEEESCHHHHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEE
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCCcEEEeCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEE
Confidence 589999999999999988 778888888876667789999999999999999999999988887777763 235577999
Q ss_pred EEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEe
Q 007012 528 VIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWL 605 (621)
Q Consensus 528 ~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~L 605 (621)
.|.|+|+||+++ .++|++|++......... .|+||||++|+++++.|||+|.+.+.+ +. |++|+|.|
T Consensus 81 ~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~----~g~GlGL~iv~~~~~~~~G~i~i~~~~------~~-Gt~~~i~l 149 (177)
T 3sl2_A 81 SVKDEGIGIPKKDVEKVFDRFYRVDKARTRKL----GGTGLGLAIAKEMVQAHGGDIWADSIE------GK-GTTITFTL 149 (177)
T ss_dssp EEECCSSCCCTTTTTTTTSTTCCCC------C----CCCCCHHHHHHHHHHHTTCCEEEEEET------TT-EEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHhhhccCCCCCCCCC----CCCCcCHHHHHHHHHHcCCEEEEEecC------CC-CeEEEEEE
Confidence 999999999988 999999997654332222 289999999999999999999999877 54 99999999
Q ss_pred cCCCCC
Q 007012 606 PSPAPL 611 (621)
Q Consensus 606 P~~~~~ 611 (621)
|.....
T Consensus 150 P~~~~~ 155 (177)
T 3sl2_A 150 PYKEEQ 155 (177)
T ss_dssp EEEC--
T ss_pred eCCCCc
Confidence 987643
No 17
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.88 E-value=5.1e-22 Score=186.20 Aligned_cols=146 Identities=20% Similarity=0.365 Sum_probs=123.7
Q ss_pred CceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeE
Q 007012 446 GIRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDA 525 (621)
Q Consensus 446 ~~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v 525 (621)
..+++++.+++++++..+.. .+..+.+........+.+|+..|.+|+.|||+||+||+ ++.|.|.+. ..++.+
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~~~v~~d~~~l~~il~nll~NAik~~--~~~I~i~~~-~~~~~~ 78 (161)
T 1bxd_A 6 PMEMADLNAVLGEVIAAESG----YEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARYG--NGWIKVSSG-TEPNRA 78 (161)
T ss_dssp CSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSCCCEEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEE-EETTEE
T ss_pred cccccCHHHHHHHHHHHhhh----hcceEEEEecCCCceEEECHHHHHHHHHHHHHHHHhhc--CCeEEEEEE-EcCCEE
Confidence 35789999999999998653 45667777655667899999999999999999999999 678999885 456789
Q ss_pred EEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEE
Q 007012 526 LVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVEL 603 (621)
Q Consensus 526 ~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l 603 (621)
.|.|.|+|+||+++ +++|++|++....... .|+||||++||++++.|||+|++.+.+ + +|++|+|
T Consensus 79 ~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~~------~g~GlGL~i~~~~~~~~gG~i~~~~~~------~-~G~~~~i 145 (161)
T 1bxd_A 79 WFQVEDDGPGIAPEQRKHLFQPFVRGDSARTI------SGTGLGLAIVQRIVDNHNGMLELGTSE------R-GGLSIRA 145 (161)
T ss_dssp EEEEEEESSCSCTTGGGCSSCCCCCCSCCCCC------CCCSCCCCTTHHHHHHHTSEEEEEEET------T-TEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHhCCCceeCCCCCCC------CCcccCHHHHHHHHHHcCCEEEEEECC------C-CeEEEEE
Confidence 99999999999988 9999999987533221 299999999999999999999999876 5 4999999
Q ss_pred EecCCCCC
Q 007012 604 WLPSPAPL 611 (621)
Q Consensus 604 ~LP~~~~~ 611 (621)
.||.....
T Consensus 146 ~lP~~~~~ 153 (161)
T 1bxd_A 146 WLPVPVTR 153 (161)
T ss_dssp EECCCSCC
T ss_pred EEeCCccc
Confidence 99987643
No 18
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.87 E-value=7.8e-21 Score=186.39 Aligned_cols=125 Identities=15% Similarity=0.151 Sum_probs=95.4
Q ss_pred eeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCc-eEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEE
Q 007012 449 PCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQS-LLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALV 527 (621)
Q Consensus 449 ~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~-~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I 527 (621)
+.++.+.+..+...+. ..++.+.+..+... .....+...+.+|+.||+.||+||++. +.|.|.+. ..++.+.|
T Consensus 91 ~~~l~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~-~~~~~~~i 164 (218)
T 3ehh_A 91 GIRLKDELINIKQILE----AADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQ-QLWKEVVI 164 (218)
T ss_dssp CCCHHHHHHHHHHHHH----HTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEE-EETTEEEE
T ss_pred CcCHHHHHHHHHHHHH----hcCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEE-EeCCEEEE
Confidence 4567777777666553 46788887764333 334567788999999999999999975 68999985 45688999
Q ss_pred EEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecC
Q 007012 528 VIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPS 607 (621)
Q Consensus 528 ~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~ 607 (621)
.|.|+|+||+++.. .|+||||++||++++.|||+|++.+ .. ||+|+|+||.
T Consensus 165 ~V~D~G~Gi~~~~~--------------------~g~GlGL~~~~~~v~~~gG~i~~~s--------~~-Gt~~~i~lP~ 215 (218)
T 3ehh_A 165 TVSDDGTFKGEENS--------------------FSKGHGLLGMRERLEFANGSLHIDT--------EN-GTKLTMAIPN 215 (218)
T ss_dssp EEEESSCCCC----------------------------CHHHHHHHHHHHTTCEEEEEC--------SS-SEEEEEEEEC
T ss_pred EEEECCcCCCCCCC--------------------CCCCCCHHHHHHHHHHcCCEEEEeC--------CC-CeEEEEEEec
Confidence 99999999997511 1899999999999999999999987 33 9999999998
Q ss_pred C
Q 007012 608 P 608 (621)
Q Consensus 608 ~ 608 (621)
.
T Consensus 216 ~ 216 (218)
T 3ehh_A 216 N 216 (218)
T ss_dssp -
T ss_pred C
Confidence 5
No 19
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.87 E-value=6e-22 Score=184.21 Aligned_cols=142 Identities=19% Similarity=0.171 Sum_probs=108.5
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhcCC-CCeEEEEEEEecCC--
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRTQV-GGKVEIVSAAAPAG-- 523 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t~~-gg~I~I~~~~~~~~-- 523 (621)
.+++++.++++.++..+... ..+++.+.++.+.....+.+|+..|.+|+.|||+||+||++. ++.|.|.+... ++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~-~~~~ 82 (160)
T 1r62_A 5 RVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTA-FQLT 82 (160)
T ss_dssp CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEE-EEEE
T ss_pred cccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCCeeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecc-cccc
Confidence 57899999999999999886 567788887775555578999999999999999999999987 78999988543 34
Q ss_pred --------eEEEEEEeCCCCCCCC--CcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCC
Q 007012 524 --------DALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAA 593 (621)
Q Consensus 524 --------~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~ 593 (621)
.+.|.|.|+|+||+++ +++|++|++... .|+||||++|+++++.|||+|++.+.+
T Consensus 83 ~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~----------~g~GlGL~i~~~~~~~~gG~l~i~s~~----- 147 (160)
T 1r62_A 83 LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE----------GGTGLGLSIARNLIDQHSGKIEFTSWP----- 147 (160)
T ss_dssp ETTEEEEEEEEEEEEEECTTC------------------------------CHHHHHHHHHHHHTTCEEEEEEET-----
T ss_pred ccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC----------CCCccCHHHHHHHHHHCCCeEEEEeCC-----
Confidence 7899999999999988 999999986431 289999999999999999999999876
Q ss_pred CCCCeeEEEEEecCC
Q 007012 594 LGSGGTRVELWLPSP 608 (621)
Q Consensus 594 ~g~~Gt~f~l~LP~~ 608 (621)
+|++|++.||..
T Consensus 148 ---~~~~~~i~lP~~ 159 (160)
T 1r62_A 148 ---GHTEFSVYLPIR 159 (160)
T ss_dssp ---TEEEEEEEEEEE
T ss_pred ---CCEEEEEEEecc
Confidence 369999999964
No 20
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.85 E-value=9.2e-21 Score=182.50 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=120.3
Q ss_pred ceeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCceEEEEcH---HHHHHHHHHHHHHHHhhc------------CCCC
Q 007012 447 IRPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSLLVAVEE---PALRQALSNLIEGALMRT------------QVGG 511 (621)
Q Consensus 447 ~~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~~V~~D~---~~L~qVL~NLL~NAlk~t------------~~gg 511 (621)
.+++++.++++.+...+...+..+++.+.+...... +..|. ..+.+|+.|||+||+||+ +.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~ 79 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGED--TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIG 79 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTT--CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCc--ccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCC
Confidence 367999999999999999999988999888874433 33454 445666999999999997 6678
Q ss_pred eEEEEEEEecCCeEEEEEEeCCCCCCCC--------------------------CcccCCccccccccccccCCCCCCcc
Q 007012 512 KVEIVSAAAPAGDALVVIDDDGPDMHYM--------------------------MHSLTPFGSELFSENMVEDNMTWNFV 565 (621)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e--------------------------~~iFe~F~~~~~s~~~~~~~~~~GtG 565 (621)
.|.|.+. ..++.+.|.|.|+|+||+++ +++|++|++....... . .|+|
T Consensus 80 ~I~I~~~-~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~-~----~g~G 153 (189)
T 1i58_A 80 TLILSAR-HEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSE-V----SGRG 153 (189)
T ss_dssp EEEEEEE-EETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHG-G----GTCC
T ss_pred eEEEEEE-ecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccccCCC-C----CCCc
Confidence 9999985 45688999999999999976 6799999875422111 1 2899
Q ss_pred chHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 566 LGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
|||++|+++++.|||+|++.+.+ +. ||+|+|.||..
T Consensus 154 lGL~iv~~~~~~~~G~i~i~s~~------~~-Gt~~~i~lPl~ 189 (189)
T 1i58_A 154 VGMDVVKNVVESLNGSISIESEK------DK-GTKVTIRLPLT 189 (189)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEET------TT-EEEEEEEEECC
T ss_pred cCHHHHHHHHHHcCCEEEEEeCC------CC-ceEEEEEEeCC
Confidence 99999999999999999999977 64 99999999973
No 21
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.75 E-value=9.7e-18 Score=150.88 Aligned_cols=125 Identities=12% Similarity=0.083 Sum_probs=101.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHhhcCCeEEEEecCCce-EEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEE
Q 007012 448 RPCNVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDAL 526 (621)
Q Consensus 448 ~~v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~-~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~ 526 (621)
+.++|.+++..++..+ ..+++.+.+....... ....++..|.+|+.||++||+||++. +.|.|.+.. .++ +.
T Consensus 3 ~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~NA~k~~~~-~~i~i~~~~-~~~-~~ 75 (129)
T 3zxo_A 3 MVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSVVDSALADQAEAVVREAVSNAVRHAAA-STLTVRVKV-DDD-LC 75 (129)
T ss_dssp --CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGGSCHHHHHHHHHHHHHHHHHCCCCSSC-CEEEEEEEE-SSE-EE
T ss_pred ccccHHHHHHHHHHHH----hhcCceEEEEecCCcccCCHHHHHHHHHHHHHHHHHHHHhCCC-ceEEEEEEE-cCC-EE
Confidence 4678999999999888 3467888877643333 33445889999999999999999964 789999854 455 99
Q ss_pred EEEEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEec
Q 007012 527 VVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLP 606 (621)
Q Consensus 527 I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP 606 (621)
|.|.|+|+||+++ .+|+||+++|++++.|||++.+.+.+ +.+|++|+++||
T Consensus 76 i~v~D~G~gi~~~-----------------------~~GlGL~i~~~~~~~~gG~i~~~~~~------~~~G~~~~i~lP 126 (129)
T 3zxo_A 76 IEVTDNGRGMPDE-----------------------FTGSGLTNLRQRAEQAGGEFTLASMP------GASGTVLRWSAP 126 (129)
T ss_dssp EEEEECCCCCTTT-----------------------TCSHHHHHHHHHHHHTTCEEEEEECT------TTCCEEEEEEEE
T ss_pred EEEecCCCCCCcc-----------------------cCCcCHHHHHHHHHHcCCEEEEeeCC------CCCcEEEEEEec
Confidence 9999999999854 35899999999999999999999976 413999999999
Q ss_pred CC
Q 007012 607 SP 608 (621)
Q Consensus 607 ~~ 608 (621)
..
T Consensus 127 ~~ 128 (129)
T 3zxo_A 127 LS 128 (129)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 22
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.74 E-value=2.3e-17 Score=149.14 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=98.2
Q ss_pred eeHHHHHHHHHHHHHHHHhhcCCeEEEEecCC-ceEEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEE
Q 007012 450 CNVSDVLGDLFEAVRPLAHMQQRQVELSELSQ-SLLVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVV 528 (621)
Q Consensus 450 v~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~-~~~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~ 528 (621)
+++.+.+..+...+ ..+++.+.++.... ......+...+.+++.||++||+||++. +.|.|.+. ..++.+.|.
T Consensus 2 v~l~~~l~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~-~~~~~~~i~ 75 (128)
T 3ehg_A 2 IRLKDELINIKQIL----EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQ-QLWKEVVIT 75 (128)
T ss_dssp CCHHHHHHHHHHHH----HHTTCEEECCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEE-EETTEEEEE
T ss_pred ccHHHHHHHHHHHH----HHcCCEEEEEcCccccccCHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEEE-EeCCEEEEE
Confidence 45666666665544 44778888776432 2334567889999999999999999975 78999884 456889999
Q ss_pred EEeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 529 IDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 529 V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
|.|+|+||+++.. . |+|+||+++|++++.|||+|++.+ .. ||+|+++||..
T Consensus 76 V~D~G~Gi~~~~~----------------~----g~GlGL~~~~~~~~~~gG~i~~~s--------~~-Gt~~~i~lP~~ 126 (128)
T 3ehg_A 76 VSDDGTFKGEENS----------------F----SKGHGLLGMRERLEFANGSLHIDT--------EN-GTKLTMAIPNN 126 (128)
T ss_dssp EEESSCCCSCSSC----------------C----CTTSHHHHHHHHHHHTTCEEEEEC--------SS-SEEEEEEEEC-
T ss_pred EEECCcCcCcccC----------------C----CCCccHHHHHHHHHHcCCEEEEEe--------CC-CEEEEEEEecC
Confidence 9999999997511 0 899999999999999999999987 34 99999999975
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.70 E-value=1.5e-16 Score=142.23 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=97.3
Q ss_pred eHHHHHHHHHHHHHHHHhhcCCeEEEEecCCce-EEEEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEE
Q 007012 451 NVSDVLGDLFEAVRPLAHMQQRQVELSELSQSL-LVAVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVI 529 (621)
Q Consensus 451 ~L~elL~~~l~~~~~~a~~~~i~l~l~~~~~~~-~V~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V 529 (621)
++.+.+..++..+ ...++.+.+....... ....+...|.+|+.||++||+||++. +.|.|.+... ++ +.|.|
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~nll~Na~k~~~~-~~i~i~~~~~-~~-~~i~v 74 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSVVDTVLANHAEAVLREAVSNAVRHANA-TSLAINVSVE-DD-VRVEV 74 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGGCCHHHHHHHHHHHHHHHHHHHTCTTC-CEEEEEEEEE-EE-EEEEE
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCccccccHHHHHHHHHHHHHHHHHHHHhCCC-CEEEEEEEeC-CC-EEEEE
Confidence 5677777777777 3467777777643332 33345788999999999999999985 6899988543 45 99999
Q ss_pred EeCCCCCCCCCcccCCccccccccccccCCCCCCccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCC
Q 007012 530 DDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSP 608 (621)
Q Consensus 530 ~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~ 608 (621)
.|+|+||+++ ..|+||+++|++++.|||++++.+.+ + +|++|+++||..
T Consensus 75 ~D~G~gi~~~-----------------------~~GlGL~~~~~~~~~~gG~i~~~~~~------~-~G~~~~i~lP~~ 123 (124)
T 3zxq_A 75 VDDGVGISGD-----------------------ITESGLRNLRQRADDAGGEFTVENMP------T-GGTLLRWSAPLR 123 (124)
T ss_dssp EECCCSSCGG-----------------------GSHHHHHHHHHHHHHHTCEEEEEECT------T-SSEEEEEEEECC
T ss_pred EECCCCCCcc-----------------------ccccCHHHHHHHHHHhCCEEEEEEcC------C-CcEEEEEEEecC
Confidence 9999999854 34899999999999999999999877 5 499999999974
No 24
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.60 E-value=3.9e-15 Score=137.05 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=83.7
Q ss_pred EcHHHHHHHHHHHHHHHHhhcCC---CCeEEEEEEEecCCeEEEEEEeCCCCCCCC-CcccCCccccccccccccCCCCC
Q 007012 487 VEEPALRQALSNLIEGALMRTQV---GGKVEIVSAAAPAGDALVVIDDDGPDMHYM-MHSLTPFGSELFSENMVEDNMTW 562 (621)
Q Consensus 487 ~D~~~L~qVL~NLL~NAlk~t~~---gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e-~~iFe~F~~~~~s~~~~~~~~~~ 562 (621)
.|...+.+++.||+.||+||+.. ++.|.|.+. ..++.+.|.|.|+|+||+ . +++|++|++... .. .
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~-~~~~~~~i~V~D~G~g~~-~~~~~~~~~~~~~~----~~----~ 104 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVI-IEDGVVHLTVRDEGVGIP-DIEEARQPLFTTKP----EL----E 104 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEE-EETTEEEEEEEECSSCCS-CHHHHTCCC---------------C
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEE-EeCCEEEEEEEECCCCcC-hHHHhhcccccCCC----CC----C
Confidence 46788999999999999999976 688999985 456789999999999999 7 899999986542 11 2
Q ss_pred CccchHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCCC
Q 007012 563 NFVAGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPAP 610 (621)
Q Consensus 563 GtGLGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~~ 610 (621)
|.|+||++++++++ .+.+.+.+ + +||+|+++||..+.
T Consensus 105 ~~GlGL~iv~~~~~----~i~~~~~~------~-~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 105 RSGMGFTIMENFMD----EVIVESEV------N-KGTTVYLKKHGIHH 141 (145)
T ss_dssp CCSCHHHHHHHHSS----EEEEEEET------T-TEEEEEEEECCC--
T ss_pred CCcchHHHHHHHHh----eEEEEeCC------C-CCEEEEEEEecccc
Confidence 89999999999998 89998876 5 49999999998764
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.49 E-value=4.3e-14 Score=155.21 Aligned_cols=115 Identities=16% Similarity=0.016 Sum_probs=91.2
Q ss_pred EEEEcHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEec--CCeEEEEEEeCCCCCCCC--CcccCCccccccccccc
Q 007012 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAP--AGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMV 556 (621)
Q Consensus 484 ~V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~--~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~ 556 (621)
.+..|+..|.+||.|||+||++|+..++ .|.|.+.... ++.+.|.|.|||+||+.+ +++|++|+++......
T Consensus 25 ~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~- 103 (471)
T 1mu5_A 25 GFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNR- 103 (471)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCS-
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccc-
Confidence 3556789999999999999999999877 8999885433 367999999999999998 8999999866433211
Q ss_pred cCCCCCCccchHHHHHHHHHHcCCE-EEEEeCCCccCCCCCCee-EEEEEecCC
Q 007012 557 EDNMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGSGGT-RVELWLPSP 608 (621)
Q Consensus 557 ~~~~~~GtGLGLaIvr~lve~~GG~-I~v~S~~~~~~~~g~~Gt-~f~l~LP~~ 608 (621)
...+|+||||++|+.+++.|||. |++.+.. +. |+ .|++.||..
T Consensus 104 --~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~------~~-g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 104 --QTRGMYGLGVKAAVLYSQMHQDKPIEIETSP------VN-SKRIYTFKLKID 148 (471)
T ss_dssp --CCSCSCTTTHHHHHHHHHHHCCCCEEEEEEC------TT-CSEEEEEEEEEC
T ss_pred --cCCCCceeeHHHHHHHHHHhCCCceeEEEec------CC-CceEEEEEEecc
Confidence 11238999999999999999999 9999977 53 54 666666643
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.49 E-value=5e-14 Score=156.51 Aligned_cols=116 Identities=16% Similarity=0.025 Sum_probs=91.1
Q ss_pred eEEEEc-HHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEec--CCeEEEEEEeCCCCCCCC--CcccCCccccccccc
Q 007012 483 LLVAVE-EPALRQALSNLIEGALMRTQVGG---KVEIVSAAAP--AGDALVVIDDDGPDMHYM--MHSLTPFGSELFSEN 554 (621)
Q Consensus 483 ~~V~~D-~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~--~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~ 554 (621)
..+..+ +..|.+|+.|||+||++|+..++ .|.|.+.... ++.+.|.|.|||+||+++ +++|++|+++.....
T Consensus 22 l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~ 101 (530)
T 2zbk_B 22 LAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVN 101 (530)
T ss_dssp GGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCC
T ss_pred ceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCccc
Confidence 334445 48999999999999999999888 8888885433 367899999999999988 899999976643211
Q ss_pred cccCCCCCCccchHHHHHHHHHHcCCE-EEEEeCCCccCCCCCCee-EEEEEecCC
Q 007012 555 MVEDNMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGSGGT-RVELWLPSP 608 (621)
Q Consensus 555 ~~~~~~~~GtGLGLaIvr~lve~~GG~-I~v~S~~~~~~~~g~~Gt-~f~l~LP~~ 608 (621)
. ...+|+||||++|+.+++.|||. |++.+.. +. |+ .|++.||..
T Consensus 102 ~---~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~------~~-g~~~~~~~Lpl~ 147 (530)
T 2zbk_B 102 R---QTRGMYGLGVKAAVLYSQMHQDKPIEIETSP------VN-SKRIYTFKLKID 147 (530)
T ss_dssp S---CCSCSSSSHHHHHHHHHHHHCCCCEEEEEEC------TT-CSEEEEEEEEEE
T ss_pred c---cCCCCccchHHHHHHHHHHhCCCceEEEEec------CC-CeEEEEEEEEec
Confidence 1 11249999999999999999999 9999876 53 54 666666643
No 27
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.30 E-value=9.4e-13 Score=148.33 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=89.2
Q ss_pred EEEEcHHHHHHHHHHHHHHHHhhcCCCC---eEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccccccC
Q 007012 484 LVAVEEPALRQALSNLIEGALMRTQVGG---KVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENMVED 558 (621)
Q Consensus 484 ~V~~D~~~L~qVL~NLL~NAlk~t~~gg---~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~~~~ 558 (621)
.+.+|+..|.+++.|||+||++|+..++ .|.|.+.....+.+.|+|.|+|+||+.+ +++|++|+.+..-... +
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~--~ 107 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHAL--K 107 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCC--C
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccc--c
Confidence 4668999999999999999999998666 8999885433267899999999999998 8899887644211110 0
Q ss_pred CCCCCccchHHHHHHHHHHcCCE-EEEEeCCCccCCCCC--CeeEEEEEecCC
Q 007012 559 NMTWNFVAGLTVARELLESYGCV-VRVISPWKTDAALGS--GGTRVELWLPSP 608 (621)
Q Consensus 559 ~~~~GtGLGLaIvr~lve~~GG~-I~v~S~~~~~~~~g~--~Gt~f~l~LP~~ 608 (621)
...+|+|+||++|+.+++.|||. |++.+.. +. .|++|++.||..
T Consensus 108 ~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~------~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 108 QSRGQQGIGISAAVLYAQMTAGRHTKILSKT------SPTAPAHYYELMINTS 154 (621)
T ss_dssp -CCSSSSHHHHHHHHHHHHHTCCCCEEEEEC------SSSSCEEEEECCCCSS
T ss_pred ccCCCceechhhhhHHHHHhCCCceeEEeec------cCCccceEEEEecchh
Confidence 11248999999999999999999 8888865 32 266666666654
No 28
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.32 E-value=6.9e-07 Score=95.80 Aligned_cols=86 Identities=15% Similarity=0.077 Sum_probs=62.6
Q ss_pred EEcHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--Cc--------ccCCcccccccccc
Q 007012 486 AVEEPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH--------SLTPFGSELFSENM 555 (621)
Q Consensus 486 ~~D~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~--------iFe~F~~~~~s~~~ 555 (621)
.++...+.+++.|+|+||+++ .++.|.|.+. .++ .|+|.|+|+|||.+ ++ +|.+|+.+..-...
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~--~~~~I~V~i~--~~~--~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~~~ 104 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAG--YATEILVRLN--EDG--SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQG 104 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SCCEEEEEEC--TTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGS
T ss_pred chHHHHHHHHHHHHHHHhhhC--CCCEEEEEEE--cCC--EEEEEEcCCCCCHHHhhhccccchhhheeeeeecccccCc
Confidence 467889999999999999985 4578999883 222 79999999999988 55 88887765321110
Q ss_pred ccCCCCCCccchHHHHHHHHHH
Q 007012 556 VEDNMTWNFVAGLTVARELLES 577 (621)
Q Consensus 556 ~~~~~~~GtGLGLaIvr~lve~ 577 (621)
......++.|+||++|+.+++.
T Consensus 105 ~~~~s~G~~G~Gls~v~als~~ 126 (390)
T 1kij_A 105 AYKVSGGLHGVGASVVNALSEW 126 (390)
T ss_dssp SCCCCSCSSTTSHHHHHHTEEE
T ss_pred cccccCCCCCcceeeecccccc
Confidence 0000123699999999999863
No 29
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.27 E-value=1.7e-06 Score=91.86 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCcccccccccc-ccCCCCCCc-cc
Q 007012 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENM-VEDNMTWNF-VA 566 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~-~~~~~~~Gt-GL 566 (621)
.+.+++.|||+||+++.. +.|.|.+. .++...|.|.|||+||+.+ +.+|++|++....... ...-...|. |+
T Consensus 34 ~~~~vl~eLv~NAiDA~a--~~I~I~i~--~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~rG~ 109 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA--TNIDLKLK--DYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGE 109 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC--SEEEEEEE--GGGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESSSSS
T ss_pred hHHHHHHHHHHHHHHCCC--CEEEEEEE--eCCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCCCCc
Confidence 468999999999999863 57888883 2345789999999999988 8999999875322110 000001244 99
Q ss_pred hHHHHHHHH
Q 007012 567 GLTVARELL 575 (621)
Q Consensus 567 GLaIvr~lv 575 (621)
||+.+..+.
T Consensus 110 gl~si~~vs 118 (365)
T 1h7s_A 110 ALSSLCALS 118 (365)
T ss_dssp HHHHHHHHS
T ss_pred hhhhhhhhc
Confidence 999876553
No 30
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.26 E-value=1.2e-06 Score=94.35 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhhcC---CCCeEEEEEEEecCCeEEEEEEeCCCCCCCCCcccCCccccccccccccCCCCCCcc
Q 007012 489 EPALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMHYMMHSLTPFGSELFSENMVEDNMTWNFV 565 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~---~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~~iFe~F~~~~~s~~~~~~~~~~GtG 565 (621)
...+..++.+|+.||++|+. .++.|.|.+....++.+.|.|+|+|+|++.. . . . .+.|
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~---------~--~-~-------~~~G 355 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR---------D--G-A-------RGRG 355 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC---------C--C-C-------CCCC
Confidence 45789999999999999983 2578999885543568999999999999842 0 0 0 1779
Q ss_pred chHHHHHHHHHHcCCEEEEEeCCCccCCCCCCeeEEEEEecCCC
Q 007012 566 AGLTVARELLESYGCVVRVISPWKTDAALGSGGTRVELWLPSPA 609 (621)
Q Consensus 566 LGLaIvr~lve~~GG~I~v~S~~~~~~~~g~~Gt~f~l~LP~~~ 609 (621)
+||.|++.+++.++ +.... +|+++++.+|...
T Consensus 356 ~GL~lv~~l~~~~~----~~~~~--------~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 356 RGLAMAEALVSEAR----IMHGA--------GGTTATLTHRLSR 387 (399)
T ss_dssp -CHHHHHTTSSEEE----EEEET--------TEEEEEEEEECEE
T ss_pred cHHHHHHHHHHhee----eEECC--------CcEEEEEEEEcCC
Confidence 99999999987654 44432 5999999998754
No 31
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.00 E-value=1.5e-05 Score=83.74 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCccccccccc-cccC-CCCCCccc
Q 007012 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSEN-MVED-NMTWNFVA 566 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~-~~~~-~~~~GtGL 566 (621)
.+.+++.|||+||+++.. ..|.|.+. .++...|+|.|||+||+.+ ..+|++|++...... .... ...++.|+
T Consensus 24 ~~~~~v~ELi~NaidA~a--~~I~I~i~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~~G~~G~ 99 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA--TRIDIDIE--RGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGE 99 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC--SEEEEEEE--GGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCSSCCSSC
T ss_pred CHHHHHHHHHHHHHHCCC--CeEEEEEE--eCCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccccCcccc
Confidence 578999999999999973 57888884 2344689999999999988 889999886532110 0000 01236899
Q ss_pred hHHHHHHH
Q 007012 567 GLTVAREL 574 (621)
Q Consensus 567 GLaIvr~l 574 (621)
||+.+..+
T Consensus 100 gl~si~~v 107 (333)
T 1b63_A 100 ALASISSV 107 (333)
T ss_dssp HHHHHHTT
T ss_pred chhhhhcC
Confidence 99987654
No 32
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.00 E-value=1.9e-05 Score=83.09 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCcccccccccc-ccCCC-CCCccc
Q 007012 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENM-VEDNM-TWNFVA 566 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~-~~~~~-~~GtGL 566 (621)
.+.+++.|||+||+++. .+.|.|.+. .++...|.|.|||+||+++ +.+|++|++....... ...-. .+-.|.
T Consensus 28 ~~~~vv~eLv~NAidA~--a~~I~I~i~--~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~GfrGe 103 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK--STSIQVIVK--EGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGFRGE 103 (348)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEE--GGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CCTTC
T ss_pred CHHHHHHHHHHHHHHcC--CCEEEEEEE--eCCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCcCCh
Confidence 46799999999999994 368888883 3455679999999999988 8999999876432210 00000 124688
Q ss_pred hHHHHHHH
Q 007012 567 GLTVAREL 574 (621)
Q Consensus 567 GLaIvr~l 574 (621)
||+-+..+
T Consensus 104 aL~Si~av 111 (348)
T 3na3_A 104 ALASISHV 111 (348)
T ss_dssp HHHHHHHS
T ss_pred HHHHhhcc
Confidence 88766654
No 33
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=97.89 E-value=8e-05 Score=63.62 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 296 QKSMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQD 366 (621)
Q Consensus 296 qr~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~~ 366 (621)
+....+++...+.++++++++||+||||++|.++++.+.. ......+.|..+.++|..+++++.+
T Consensus 48 ~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~------~~~~~~~~i~~~~~~l~~~i~~ll~ 112 (114)
T 3zcc_A 48 RLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE------QDGYLAESINKDIEECNAIIEQFID 112 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG------GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455556667889999999999999999999998753 2355668899999999999998854
No 34
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.71 E-value=9e-05 Score=78.58 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCcccccccccc-ccCCCCCC-ccc
Q 007012 491 ALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSENM-VEDNMTWN-FVA 566 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~~~-~~~~~~~G-tGL 566 (621)
.+.+++.||++||+++. ...|.|.+. +++...|+|.|||+||+++ +.+|++|++....... ...-...| .|.
T Consensus 25 ~~~~vv~eLv~NaiDA~--a~~I~I~i~--~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~GfrGe 100 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN--ANQIEIIFK--DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGE 100 (367)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEE--TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEETTH
T ss_pred CHHHHHHHHHHHHHHCC--CCEEEEEEE--eCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCccch
Confidence 46799999999999986 357888883 4566789999999999988 8999999865322210 00000112 477
Q ss_pred hHHHHHHH
Q 007012 567 GLTVAREL 574 (621)
Q Consensus 567 GLaIvr~l 574 (621)
||+-+..+
T Consensus 101 aL~Si~av 108 (367)
T 3h4l_A 101 ALSSLCGI 108 (367)
T ss_dssp HHHHHHHS
T ss_pred HHHHhhcc
Confidence 88766554
No 35
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.63 E-value=0.00043 Score=66.78 Aligned_cols=74 Identities=8% Similarity=-0.012 Sum_probs=41.1
Q ss_pred hcCCeEEEEecCCceEEEEcHHHHHHHHHHHHHHHHhhc------CCCCeEEEEEEEec--CCeEEEEEEeCCCCCCCC-
Q 007012 469 MQQRQVELSELSQSLLVAVEEPALRQALSNLIEGALMRT------QVGGKVEIVSAAAP--AGDALVVIDDDGPDMHYM- 539 (621)
Q Consensus 469 ~~~i~l~l~~~~~~~~V~~D~~~L~qVL~NLL~NAlk~t------~~gg~I~I~~~~~~--~~~v~I~V~D~G~GI~~e- 539 (621)
.+++.+.++..+....+...+..+ .||++||+... ...+.|.|.+.. . ++.+.|.|.|+|++|+.+
T Consensus 87 a~e~~i~lev~~~~s~l~~~~~~l----gnLi~na~~Ai~~~~~~~~~~~I~i~i~~-~~~~~~l~i~V~d~G~~i~~e~ 161 (192)
T 1ixm_A 87 THYMTLEYEVLGEIKDLSAYDQKL----AKLMRKLFHLFDQAVSRESENHLTVSLQT-DHPDRQLILYLDFHGAFADPSA 161 (192)
T ss_dssp CCSSEEEEEEESSCCCCTTTHHHH----HHHHHHHHHHHHHHBCTTSCCEEEEEEEC-CCSSSSCEEEEEEESCBSCGGG
T ss_pred hccCCeEEEEecCccccCCCcHHH----HHHHHHHHHHHHhhhccCCCCeEEEEEEE-ecCCCEEEEEEEeCCCCCCHHH
Confidence 356777774312222222233333 55665555432 235689998843 3 567999999999999987
Q ss_pred -CcccCCcc
Q 007012 540 -MHSLTPFG 547 (621)
Q Consensus 540 -~~iFe~F~ 547 (621)
.++|+..+
T Consensus 162 ~~~if~~~~ 170 (192)
T 1ixm_A 162 FDDIRQNGY 170 (192)
T ss_dssp CC-------
T ss_pred HHHHHhCCC
Confidence 77877554
No 36
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.35 E-value=0.0023 Score=60.21 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=81.9
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeee---eccccc-------C
Q 007012 109 NLVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN-------M 178 (621)
Q Consensus 109 ~l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~~~~~-------~ 178 (621)
.++..+.|+.+..+..+.++...++.+ +++|||... ..+++.+.+ .+.......+.. ++|++. +
T Consensus 24 ~ll~~~~dl~~~L~~v~~~l~~~l~~~-~~~iyL~d~---~~~~L~l~a--~~G~~~~~~i~~geGi~G~v~~~g~~~~v 97 (167)
T 3mmh_A 24 SVVADETDWVANLANTAAVLKEAFGWF-WVGFYLVDT---RSDELVLAP--FQGPLACTRIPFGRGVCGQAWAKGGTVVV 97 (167)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHCCS-EEEEEEEET---TTTEEEEEE--EESSCCCSEEETTSHHHHHHHHHTSCEEE
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCc-EEEEEEEEC---CCCEEEEEE--ecccccceEeccCCChHHHHHhCCcEEEE
Confidence 456677899999999999999999655 667999862 133344443 333222111111 344443 3
Q ss_pred CcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccc
Q 007012 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258 (621)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 258 (621)
+.....|.. . .. .....+.+++||+.+++++|+|.+.. . ++.
T Consensus 98 ~Dv~~~p~~-~-~~---~~~~~S~i~vPi~~~g~viGVL~i~s-----------~-----------~~~----------- 139 (167)
T 3mmh_A 98 GDVDAHPDH-I-AC---SSLSRSEIVVPLFSDGRCIGVLDADS-----------E-----------HLA----------- 139 (167)
T ss_dssp SCGGGSTTC-C-CS---STTCCEEEEEEEEETTEEEEEEEEEE-----------S-----------STT-----------
T ss_pred CCcccCcch-h-hc---CccCCeEEEEEeccCCEEEEEEEEec-----------C-----------CCC-----------
Confidence 333322221 1 11 12345789999999999999998882 1 110
Q ss_pred hhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 007012 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296 (621)
Q Consensus 259 ~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~q 296 (621)
.|+++....++.++..++.+..++.
T Consensus 140 -------------~F~~~d~~~L~~lA~~la~~i~~~~ 164 (167)
T 3mmh_A 140 -------------QFDETDALYLGELAKILEKRFEASR 164 (167)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 1777888899999999887665543
No 37
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.23 E-value=0.00013 Score=71.83 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCc
Q 007012 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPF 546 (621)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F 546 (621)
.+|.+||+||+++.. .++.|.|.+.. +.+...|.|.|||.||+.+ ...|..+
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~-~~~~~~i~I~DnG~GMs~edl~~~l~~i 96 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP-KPEQKVLEIRDSGIGMTKAELINNLGTI 96 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE-EGGGTEEEEEECSCCCCHHHHHHHTTTS
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE-CCCCCEEEEEEcCCCCCHHHHHHHHHhH
Confidence 578889999998754 12444444432 2345679999999999987 4444443
No 38
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=97.13 E-value=0.003 Score=59.00 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCC---Ceee-----ecccc------cCCcc
Q 007012 116 DFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNAT---DIVV-----LVGNF------NMPAG 181 (621)
Q Consensus 116 ~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~---~~~~-----l~~~~------~~~~~ 181 (621)
++.++.+..++.+.+.++.+ ++++|+.+. + +|+..+.||..... ...+ +++.+ .+...
T Consensus 5 sldevL~~v~~~l~~~~~~d-~~~l~L~~~-----~--~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v~~~ 76 (165)
T 3o5y_A 5 SLDDIINNMIDKLKLLVHFD-RISFLLLAN-----E--TLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIFRSL 76 (165)
T ss_dssp CHHHHHHHHHHHHHHHSCCS-EEEEEEEET-----T--EEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEEEES
T ss_pred CHHHHHHHHHHHHHHhcCcc-eEEEEEEEC-----C--EEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEEEcC
Confidence 46678888889999999777 777999973 2 46666777764320 0111 11111 11000
Q ss_pred hhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhh
Q 007012 182 LRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIE 261 (621)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~ 261 (621)
..++..............++.+++||+.+|.++|+|.+.. . .+ .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl~l~~-----------~-----------~~-~------------- 120 (165)
T 3o5y_A 77 TDTQDNFYEKQYLAILDLKSILVIPIYSKNKRVGVLSIGR-----------K-----------QQ-I------------- 120 (165)
T ss_dssp CCTTCCCTTHHHHHTTTCCEEEEEEEECSSCEEEEEEEEE-----------S-----------SC-C-------------
T ss_pred cccccccccchHHHhhCCCEEEEeCeeECCEEEEEEEEEe-----------C-----------CC-C-------------
Confidence 0000000000001123346789999999999999999882 1 11 0
Q ss_pred cchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 007012 262 SFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (621)
Q Consensus 262 ~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l 294 (621)
.|+++....++.++.++++|..-
T Consensus 121 ----------~f~~~d~~~l~~la~~~aiai~n 143 (165)
T 3o5y_A 121 ----------DWSLDDLAFLEQLTDHLAVSIEN 143 (165)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 27888889999999999998743
No 39
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.003 Score=58.20 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=74.4
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC---------CCeee-----ecccc
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA---------TDIVV-----LVGNF 176 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~---------~~~~~-----l~~~~ 176 (621)
+..+.|+.++.+..++.+.+.++.+ ++++|+.... ...+...+.+..... ....+ +.|.+
T Consensus 23 ~~~~~dld~ll~~i~~~~~~~l~ad-~~~i~l~d~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (189)
T 2zmf_A 23 FDNIVAIDSLLEHIMIYAKNLVNAD-RCALFQVDHK-----NKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEKGIAGQV 96 (189)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHTEE-EEEEEEEETT-----TTEEEEEEECCSCEETTEECCEECCCCEEETTSHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHhCCC-EEEEEEEecC-----CcEEEEEEEecccccccccccccccccccCCCccHHHHH
Confidence 3445689999999999999999555 5559998721 124444333222111 00001 11111
Q ss_pred c-------CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCC
Q 007012 177 N-------MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAF 249 (621)
Q Consensus 177 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (621)
. ++....++.................+++||+.++.++|+|.+.. .. .+.
T Consensus 97 ~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~----------~~-----------~~~-- 153 (189)
T 2zmf_A 97 ARTGEVLNIPDAYADPRFNREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVN----------KI-----------SGS-- 153 (189)
T ss_dssp HHHCCCEEESCGGGSTTCCTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEE----------ET-----------TSS--
T ss_pred HHhCCeEEEecccccccccccchhhcccccceEEEeeecccCceeeEEEEEE----------cC-----------CCC--
Confidence 0 22211111100000111123345789999999999999998762 11 010
Q ss_pred CCCCccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 007012 250 PPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (621)
Q Consensus 250 ~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~ 293 (621)
.|+++....+..+|.++++|..
T Consensus 154 ----------------------~f~~~d~~ll~~lA~q~a~Ai~ 175 (189)
T 2zmf_A 154 ----------------------AFSKTDENNFKMFAVFCALALH 175 (189)
T ss_dssp ----------------------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CcCHHHHHHHHHHHHHHHHHHH
Confidence 1677888899999999998763
No 40
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=97.04 E-value=0.0066 Score=54.91 Aligned_cols=131 Identities=11% Similarity=0.118 Sum_probs=79.7
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCeee-----eccccc------
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNFN------ 177 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~~~~~------ 177 (621)
+..+.|+.++++..++.+.+.++.+ .+++|+.... . ..|..++.+..... ....+ +.|.+.
T Consensus 17 l~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~d~~---~--~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (171)
T 3trc_A 17 VNAAPNLEQALKLVVVRLCEALPAD-ACSLFICDDV---H--GEYVLMATQGLNSKQVGKLRLKFGEGLIGLVGEREEPI 90 (171)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHTTCS-EEEEEEEETT---T--TEEEEEEEESSCGGGTTTCEEETTCHHHHHHHHHTSCE
T ss_pred HhcccCHHHHHHHHHHHHHHHhCCc-EEEEEEEECC---C--CeEEEEEecCCCccccccEeecCCCChhhHHHhcCCeE
Confidence 3456789999999999999999555 4458988721 2 25677776654322 11111 111110
Q ss_pred -CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 007012 178 -MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (621)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 256 (621)
++....++. ...............+++||+.++.++|+|.+.. . ++.
T Consensus 91 ~~~d~~~~~~-~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~~~~-----------~-----------~~~--------- 138 (171)
T 3trc_A 91 NLADAPLHPA-YKHRPELGEEDYHGFLGIPIIEQGELLGILVIQQ-----------L-----------ESH--------- 138 (171)
T ss_dssp EESCGGGSTT-CCCCGGGCCCCCCEEEEEEEEETTEEEEEEEEEE-----------S-----------SSC---------
T ss_pred EeCCCCCCCc-ccccccCCcccccEEEEEeEEECCEEEEEEEEee-----------c-----------CCC---------
Confidence 111111111 1101112234456899999999999999999982 1 110
Q ss_pred cchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 007012 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (621)
Q Consensus 257 ~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l 294 (621)
.|++++...+..++.++++|..-
T Consensus 139 ---------------~f~~~d~~~l~~la~~~a~ai~~ 161 (171)
T 3trc_A 139 ---------------HFAEEEEAFCVTLAIHLAAEIAH 161 (171)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 16678888999999999987643
No 41
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.00 E-value=0.0081 Score=56.10 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=61.8
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhc-CCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeee---eccccc-------
Q 007012 109 NLVLPSPDFQRLCVEQLHLFRRIVD-PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN------- 177 (621)
Q Consensus 109 ~l~~~s~~f~~l~~~ql~~~~~~~~-~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~~~~~------- 177 (621)
.++....|+.+.....+.++...++ .+ ++|||+.+. +++.|.+....| ....+.. ++|++.
T Consensus 24 ~ll~~~~dl~~~L~~v~~ll~~~l~~~~-~~gfYL~~~-----~~L~l~~~~G~~--a~~ri~~GeGv~G~aa~~~~~i~ 95 (160)
T 3ksh_A 24 SLIEDEHHMIAILSNMSALLNDNLDQIN-WVGFYLLEQ-----NELILGPFQGHP--ACVHIPIGKGVCGTAVSERRTQV 95 (160)
T ss_dssp HTTTTCCCHHHHHHHHHHHHHHHCSSCS-EEEEEEEET-----TEEEEEEEEESC--CCSEEETTSHHHHHHHHHTSCEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHcccCC-EEEEEEEEC-----CEEEEEeccCCc--ccEEeeCCCCHHHHHHhhCCEEE
Confidence 4566778899999999999999985 55 778999972 334444443332 2111111 345443
Q ss_pred CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 007012 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
++.....|.... . .....+.+++||+.+++++|+|.+.
T Consensus 96 V~Dv~~~p~~i~--~---~~~~~Sei~VPI~~~g~viGVL~i~ 133 (160)
T 3ksh_A 96 VADVHQFKGHIA--C---DANSKSEIVVPIFKDDKIIGVLDID 133 (160)
T ss_dssp ESCGGGSTTCCG--G---GTTCSEEEEEEEEETTEEEEEEEEE
T ss_pred ECCcccCccccc--c---CcccCceEEEEEEECCEEEEEEEEe
Confidence 333333232111 1 1234578999999999999999988
No 42
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=96.98 E-value=0.0037 Score=52.83 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007012 298 SMLLQQSSWQNNARMSNLVEQIRGPLSSIQTLSKMLSLHMKRSEISYDIVEDIMVQGDRLRGTLQELQ 365 (621)
Q Consensus 298 ~~~lqq~~~q~~~~la~lsHELRtPLtaI~~~~~lL~~~l~~~~~~~~~~e~I~~~~~rL~~ll~~L~ 365 (621)
...+++...+..+++..++||+|||++.|.++++.+... ..+..+.+...+.++.++++++.
T Consensus 50 ~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~l~ 111 (115)
T 3zrx_A 50 RRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ------DGYLAESINKDIEECNAIIEQFI 111 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG------GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555578899999999999999999999877543 35667778888888888888774
No 43
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=96.96 E-value=0.02 Score=51.52 Aligned_cols=132 Identities=9% Similarity=0.073 Sum_probs=79.4
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCeeeec-------cccc----
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVVLV-------GNFN---- 177 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~l~-------~~~~---- 177 (621)
+..+.|+.++++..++.+.+.++.+ ++.+|+... +...|..++.+..... ....+.. |.+.
T Consensus 11 l~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~d~-----~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T 3oov_A 11 IQKSIDVDEVLRLCAEGLHDVLGYE-RVNILMADT-----ARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQ 84 (169)
T ss_dssp HHHCCCHHHHHHHHHHHHHHTTCCS-EEEEEEECT-----TSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTC
T ss_pred HhhhcCHHHHHHHHHHHHHHhhCCc-eEEEEEEeC-----CCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCC
Confidence 3456789999999999999999555 555999862 1236777777764221 1111111 1110
Q ss_pred ---CCcchhhhhhhhc---cccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCC
Q 007012 178 ---MPAGLRAAEAALS---SQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPP 251 (621)
Q Consensus 178 ---~~~~~~~~~~~~~---~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (621)
++.....+..... ............+++||..+++++|+|++.. .... +
T Consensus 85 ~~~i~d~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~----------~~~~---------~------ 139 (169)
T 3oov_A 85 VYMIDDVSAYPTDFRLQSPYDAIRALRSKSFVICPIVVKGEAIGVFAVDN----------RSSR---------R------ 139 (169)
T ss_dssp CEEESCGGGSCGGGSCCTTGGGCGGGCCSSEEEEEEEETTEEEEEEEEEC----------TTSS---------S------
T ss_pred CEEeccccchhhhhhccccHHHHHhcCcCcEEEEEEEeCCcEEEEEEEEc----------cccC---------C------
Confidence 1111111110000 0112234456899999999999999999982 1100 1
Q ss_pred CCccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 007012 252 SFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (621)
Q Consensus 252 ~~~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~ 293 (621)
.|++++...+..++.++++|..
T Consensus 140 --------------------~f~~~d~~~l~~~a~~~a~ai~ 161 (169)
T 3oov_A 140 --------------------SLNDTDVDTIKLFADQASSAIV 161 (169)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 1667888889999999998763
No 44
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=96.89 E-value=0.0068 Score=55.24 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=75.0
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCC--CCCeeeecc-----ccc-----
Q 007012 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVN--ATDIVVLVG-----NFN----- 177 (621)
Q Consensus 110 l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~--~~~~~~l~~-----~~~----- 177 (621)
.+..+.++.++++..++.+.+.++.+ .+++|+...+ + . ..++.+.... .....+..+ .+.
T Consensus 23 ~l~~~~~~~~~l~~i~~~~~~~~~~~-~~~i~l~d~~----~-~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (181)
T 3e0y_A 23 LVSSDFDLPEVLQHVTAKVATQLKVS-VCNIYLREGD----E-V--VLAATHGFDPAFIGKIRIKIGDGITGSVARDGQY 94 (181)
T ss_dssp HHSTTSCHHHHHHHHHHHHHHHTTCS-CEEEEEEETT----E-E--EEEEEESSCGGGTTTCEEETTTSSHHHHHHHCCC
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEcCC----C-c--eEEEecCCCHHHhccccccCCCCeeeehhhcCCe
Confidence 34566789999999999999999555 5558988721 1 1 3334443221 111111111 110
Q ss_pred --CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 007012 178 --MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (621)
Q Consensus 178 --~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (621)
++.....+. ...............+++||+.++.++|+|++.. . ++.
T Consensus 95 ~~i~d~~~~~~-~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl~~~~-----------~-----------~~~-------- 143 (181)
T 3e0y_A 95 ISLSRASQDPR-YRYFPELQEEKYNSMLSFPIGDKKEVYGVINLNT-----------T-----------SIR-------- 143 (181)
T ss_dssp EEEEEECCCCC-C---------CEEEEEEEEEECSSCEEEEEEEEE-----------S-----------SCC--------
T ss_pred EEecCcccCcc-ccccccccccCcceEEEEEEEeCCeEEEEEEEee-----------C-----------CCC--------
Confidence 111111110 0000011112235689999999999999999983 1 110
Q ss_pred ccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297 (621)
Q Consensus 256 e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~qr 297 (621)
.|+++....+..++.+++++....+.
T Consensus 144 ----------------~f~~~~~~~l~~la~~~a~al~~~~~ 169 (181)
T 3e0y_A 144 ----------------SFHEDEIYFVSIIANLILTAIKLRQQ 169 (181)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16678888899999999998754443
No 45
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=96.88 E-value=0.0071 Score=58.33 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=79.6
Q ss_pred ccccCChhHHHHHHHHHHHhhhhh-cCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeee---eccccc-------
Q 007012 109 NLVLPSPDFQRLCVEQLHLFRRIV-DPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN------- 177 (621)
Q Consensus 109 ~l~~~s~~f~~l~~~ql~~~~~~~-~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~~~~~------- 177 (621)
.++..+.|+.++++..++++...+ +.+ +.+||+... +.+.+.+...++. ...+.. ++|++.
T Consensus 36 ~ll~~~~dl~~~L~~v~~ll~~~l~~~~-~~~iyL~d~-----~~L~l~~~~G~~~--~~~i~~GeGi~G~aa~tg~~i~ 107 (195)
T 1vhm_A 36 ALMAGETSFLATLANTSALLYERLTDIN-WAGFYLLED-----DTLVLGPFQGKIA--CVRIPVGRGVCGTAVARNQVQR 107 (195)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSSCS-EEEEEEEET-----TEEEEEEEEESCC--CSEEETTSHHHHHHHHHTSCEE
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCCCCC-EEEEEEEEC-----CEEEEEEecCccc--ceEecCCCChHHHHHhcCCEEE
Confidence 567788899999999999999999 444 556999972 3344444333332 111111 344442
Q ss_pred CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcccc
Q 007012 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTES 257 (621)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 257 (621)
++.....|... .. .....+.+++||+.++.++|+|.+.. . ++
T Consensus 108 V~Dv~~~p~~~--~~---~~~~~S~l~VPI~~~g~viGVL~i~s-----------~-----------~~----------- 149 (195)
T 1vhm_A 108 IEDVHVFDGHI--AC---DAASNSEIVLPLVVKNQIIGVLDIDS-----------T-----------VF----------- 149 (195)
T ss_dssp ESCTTTCTTCC--CS---CCCCSEEEEEEEEETTEEEEEEEEEE-----------S-----------ST-----------
T ss_pred ECCcccCcchh--hc---CCCccEEEEEeEeECCEEEEEEEecC-----------C-----------CC-----------
Confidence 33222222211 10 11246899999999999999998872 1 11
Q ss_pred chhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHH
Q 007012 258 HAIESFDHERMRVYKFSADQRLNAINICRSLAMAY 292 (621)
Q Consensus 258 ~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~ 292 (621)
..|+++....++.++..++.+.
T Consensus 150 -------------~~F~e~d~~~L~~lA~~ia~al 171 (195)
T 1vhm_A 150 -------------GRFTDEDEQGLRQLVAQLEKVL 171 (195)
T ss_dssp -------------TCCCHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 0277888889999999988765
No 46
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.84 E-value=0.00016 Score=73.47 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 495 ALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 495 VL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
+|.+||+||+.+.. .++.+.|.+.. +.+...|.|.|||+||+.+
T Consensus 32 fLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~-d~~~~~l~I~DnGiGMt~e 89 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC-DKEKNLLHVTDTGVGMTRE 89 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE-ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE-cCCceEEEEEECCCCCCHH
Confidence 78889999988742 22334444422 2345679999999999987
No 47
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.83 E-value=0.0033 Score=67.19 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCCC----------cccCCccccccccccccC
Q 007012 489 EPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYMM----------HSLTPFGSELFSENMVED 558 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e~----------~iFe~F~~~~~s~~~~~~ 558 (621)
...+.+++.|.|+||+ ......|.|.+. .++ .|+|+|||.|||.+. .+|..++.+..-....+.
T Consensus 33 ~~lv~ElvdNsiD~a~--~g~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~~~~ 106 (390)
T 1s16_A 33 NHLGQEVIDNSVDEAL--AGHAKRVDVILH--ADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQ 106 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TTCCSEEEEEEC--TTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCS
T ss_pred HHHHHHHHHHHHHHHh--cCCCCEEEEEEe--cCC--EEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCCccc
Confidence 5678888888888888 233468999883 223 699999999999762 256665543210010010
Q ss_pred CCCCC-ccchHHHHHHHHH
Q 007012 559 NMTWN-FVAGLTVARELLE 576 (621)
Q Consensus 559 ~~~~G-tGLGLaIvr~lve 576 (621)
-.+| .|.||+.+..+.+
T Consensus 107 -~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 107 -FSGGLHGVGISVVNALSK 124 (390)
T ss_dssp -SCSCCSSCHHHHHHHTEE
T ss_pred -ccCCccccchHHHHHhhc
Confidence 1224 8999999998874
No 48
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=96.79 E-value=0.0057 Score=54.69 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=72.1
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCe--eeeccccc-------CCcch
Q 007012 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDI--VVLVGNFN-------MPAGL 182 (621)
Q Consensus 114 s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~--~~l~~~~~-------~~~~~ 182 (621)
|.|+.++.+..++.+...++.+ .+++|+... .+ .|..++.+..... ... ....|.+. ++...
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~-~~~i~l~d~----~~--~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCD-RASILLFDE----AG--TMRFVAARGLSEHYQRAVDGHSPWITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCS-EEEEEEECT----TS--CEEEEEEESCCHHHHHHTCBCCSCC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCC-EEEEEEEcC----CC--cEEEEeeCCCCHHHHhhccCCCchhhhhhcCCcEEEeChh
Confidence 4577888999999999999555 555888862 22 4666666543211 000 00111110 11111
Q ss_pred hhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhc
Q 007012 183 RAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIES 262 (621)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~ 262 (621)
.++.............-...+++||..++.++|+|.+.. . ++.
T Consensus 74 ~~~~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl~~~~-----------~-----------~~~--------------- 116 (151)
T 3hcy_A 74 DAEFSRELKESIVGEGIAALGFFPLVTEGRLIGKFMTYY-----------D-----------RPH--------------- 116 (151)
T ss_dssp GSCCCHHHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEE-----------S-----------SCC---------------
T ss_pred hCcccchhHHHHHhcCchheEEeceEECCEEEEEEEEec-----------C-----------CCC---------------
Confidence 111000000000011124689999999999999998882 1 111
Q ss_pred chhhhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 007012 263 FDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295 (621)
Q Consensus 263 ~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~ 295 (621)
.|++++...+..++.++++|....
T Consensus 117 ---------~f~~~~~~ll~~~a~~~a~ai~~~ 140 (151)
T 3hcy_A 117 ---------RFADSEIGMALTIARQLGFSIQRM 140 (151)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 166788888899999999877543
No 49
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=96.76 E-value=0.0054 Score=57.94 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhc-CCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeee---eccccc-------
Q 007012 109 NLVLPSPDFQRLCVEQLHLFRRIVD-PDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV---LVGNFN------- 177 (621)
Q Consensus 109 ~l~~~s~~f~~l~~~ql~~~~~~~~-~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~---l~~~~~------- 177 (621)
.++....|+.+.....+.++...++ .+ ++|||+.+. +++.|.+....|. ...+.. ++|++.
T Consensus 25 ~ll~~~~dl~~~L~nv~~lL~~~l~~~~-~~gfYL~~~-----~~L~l~a~~G~~a--~~ri~~GeGv~G~va~tg~~i~ 96 (171)
T 3rfb_A 25 FLLEGETNVLANLSNASALIKSRFPNTV-FAGFYLFDG-----KELVLGPFQGGVS--CIRIALGKGVCGEAAHFQETVI 96 (171)
T ss_dssp HHHTTCCBHHHHHHHHHHHHHHHCTTEE-EEEEEEECS-----SEEEEEEEESSSC--CCEEETTSHHHHHHHHTTSCEE
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHccCCC-EEEEEEEEC-----CEEEEEeccCCcc--ceEeeCCcCHHHHHHhhCCEEE
Confidence 3455677788888888888888884 34 666999972 3344444333332 111111 344443
Q ss_pred CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEe
Q 007012 178 MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
++.....|... .. .....+.+++||+.+++++|+|.+.
T Consensus 97 V~Dv~~~p~~i--~~---~~~~~Sei~VPI~~~g~viGVL~i~ 134 (171)
T 3rfb_A 97 VGDVTTYLNYI--SC---DSLAKSEIVVPMMKNGQLLGVLDLD 134 (171)
T ss_dssp ESCTTSCSSCC--CS---CTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred ECCcccCcccc--cc---CcccCceEEEEEEECCEEEEEEEEe
Confidence 23322222111 10 1224578999999999999999988
No 50
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=96.75 E-value=0.017 Score=51.62 Aligned_cols=130 Identities=14% Similarity=0.102 Sum_probs=75.7
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCeee-----eccccc------
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIVV-----LVGNFN------ 177 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~~-----l~~~~~------ 177 (621)
+..+.++.++++..++.+.+.++.+ .+.+|+.... . ..+..++.+..... ....+ +.|.+.
T Consensus 19 l~~~~~~~~~l~~~~~~~~~~~~~~-~~~i~l~~~~---~--~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (171)
T 3ci6_A 19 INSSVSLHDSLDIMVNQVADAMKVD-VCSIYLLDER---N--QRYLLMASKGLNPESVGHVSLQLSEGLVGLVGQREEIV 92 (171)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHTCS-EEEEEEEETT---T--TEEEEEEEESSCGGGTTTCEEETTSHHHHHHHHHTSCE
T ss_pred HhcCCCHHHHHHHHHHHHHHHhCCC-eEEEEEEeCC---C--CEEEEEeccCCCcccccceeeeccCCeehhhhccCceE
Confidence 3456788999999999999999544 4448888621 1 25677776654321 11111 111110
Q ss_pred -CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 007012 178 -MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (621)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 256 (621)
++.....+. ...............+++||..++.++|+|++.. . ++.
T Consensus 93 ~~~d~~~~~~-~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~-----------~-----------~~~--------- 140 (171)
T 3ci6_A 93 NLENASKHER-FAYLPETGEEIYNSFLGVPVMYRRKVMGVLVVQN-----------K-----------QPQ--------- 140 (171)
T ss_dssp EESSGGGSTT-C---------CCCEEEEEEEEETTEEEEEEEEEE-----------S-----------SCC---------
T ss_pred EecCCCcCcc-hhccccccccccceEEEEeEEECCEEEEEEEEec-----------C-----------CCC---------
Confidence 111111110 0000011222346789999999999999999983 1 110
Q ss_pred cchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 007012 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (621)
Q Consensus 257 ~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~ 293 (621)
.|+++....+..++.+++++..
T Consensus 141 ---------------~f~~~~~~~l~~la~~~a~al~ 162 (171)
T 3ci6_A 141 ---------------DFSEAAESFLVTLCAQLSGVIA 162 (171)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 1667888888899999988764
No 51
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=96.65 E-value=0.0096 Score=55.52 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=77.1
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEee-cCCCCCCCeee----ecccc------c-C
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVS-YPGVNATDIVV----LVGNF------N-M 178 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~-yp~~~~~~~~~----l~~~~------~-~ 178 (621)
+..+.|+.++.+..++.+.+.++.+ ++++|+-+. + ++..++. |+........+ +.|.+ . +
T Consensus 39 l~~~~dl~~il~~i~~~l~~~l~~d-~~~i~l~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 110 (184)
T 3p01_A 39 TQASNSLEAILTPIATAFAESFAVN-ACILQMLEG-----Q--TLSTIQGFYSQQGTVNNWLNQDPLTNEAIATGQIQVA 110 (184)
T ss_dssp HHHCSSSHHHHHHHHHHHHHHHTCS-EEEEEEEET-----T--EEEEEEEEEESSSSCCCCGGGCHHHHHHHHHCSCEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEecC-----C--ceeeeeeeccccCccCcccCCCcHHHHHHhhCCeEEE
Confidence 3456788899999999999999777 677888752 1 3455544 76533211110 11111 0 1
Q ss_pred CcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccc
Q 007012 179 PAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESH 258 (621)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 258 (621)
+....++.. ..............+++||+.++.++|+|.+.. ... +.
T Consensus 111 ~d~~~~~~~-~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~-----------~~~---------~~------------ 157 (184)
T 3p01_A 111 ANIAKDPKL-ASISQYQDNGIQSHVVIPITYRNEMLGVLSLQW-----------QQP---------IS------------ 157 (184)
T ss_dssp SCGGGCHHH-HTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEE-----------SSC---------CC------------
T ss_pred eccccCccc-cchhHHHHhCccEEEEEEEEECCEEEEEEEeCc-----------CCC---------CC------------
Confidence 211111110 000111122346789999999999999998862 100 12
Q ss_pred hhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 007012 259 AIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (621)
Q Consensus 259 ~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~ 293 (621)
|++++...+..+|.++++|..
T Consensus 158 --------------f~~~d~~ll~~lA~q~aiAi~ 178 (184)
T 3p01_A 158 --------------LREDELTLIHLSAQLVAIALT 178 (184)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHHHHHHH
Confidence 566888899999999998764
No 52
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=96.64 E-value=0.031 Score=50.92 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=76.8
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEE-eecCCCCC---CCeee-----eccccc----
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRV-VSYPGVNA---TDIVV-----LVGNFN---- 177 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v-~~yp~~~~---~~~~~-----l~~~~~---- 177 (621)
+..+.|+.++++..++.+.+.++.+ .+++|+...+ .+ .+... ..|+.... ....+ +.|.+.
T Consensus 15 l~~~~d~~~~l~~i~~~~~~~~~~~-~~~i~l~d~~---~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 88 (177)
T 3k2n_A 15 IGTIRDPQELFRTVTDKLRLLFAFD-SAVIITIDRE---RR--EASVFFEMLRFELPEQLRHQTRSIAGTWLEGHLDDRT 88 (177)
T ss_dssp HTTCCSHHHHHHHHHHHHTTTCCCS-EEEEEEEETT---TT--EEEEEEEECSSCCCSTTCCSEEECTTSGGGGGTTCCS
T ss_pred HhcccCHHHHHHHHHHHHHHhcCCC-eEEEEEEcCC---CC--eEEeEEecccCCCCchhhcccCCccccHHHHHhccCC
Confidence 4567889999999999999999666 5668887621 22 34432 33333221 01111 112211
Q ss_pred --CCcchhhhhhhhcccc-------ccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccC
Q 007012 178 --MPAGLRAAEAALSSQQ-------VQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYA 248 (621)
Q Consensus 178 --~~~~~~~~~~~~~~~~-------~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (621)
+..... .+...... .........+++||+.+++++|+|.+.. . ++.
T Consensus 89 ~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL~l~~-----------~-----------~~~- 143 (177)
T 3k2n_A 89 VTVASIAR--DIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVS-----------A-----------EEK- 143 (177)
T ss_dssp CEEEETTT--TCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEE-----------S-----------SCC-
T ss_pred ceEechhh--cccccCCcchhHHHHHHHcCceEEEEEEEEECCEEEEEEEEEE-----------C-----------CCC-
Confidence 110000 00000000 1112235789999999999999999982 1 111
Q ss_pred CCCCCccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 007012 249 FPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQK 297 (621)
Q Consensus 249 ~~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~qr 297 (621)
.|++++...+..+|.++++|..-.+.
T Consensus 144 -----------------------~f~~~d~~ll~~lA~~~a~Ai~na~l 169 (177)
T 3k2n_A 144 -----------------------LWSDGDKSLLSGVSSSIAIAVSNALA 169 (177)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 16778888999999999998754433
No 53
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.59 E-value=0.00089 Score=66.64 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcC--------------CC--CeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCc
Q 007012 494 QALSNLIEGALMRTQ--------------VG--GKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPF 546 (621)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F 546 (621)
.+|.+||+||+.+.. .. ..|.|.+ .. +...|.|.|||.||+.+ ...|..+
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~--~~-~~~~i~I~DnG~GMs~edl~~~~~~i 117 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DK-DKRTLTISDNGVGMTRDEVIDHLGTI 117 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE--ET-TTTEEEEEECSSCCCHHHHHHHHTTC
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE--cC-CceEEEEEECCCCCCHHHHHHHHHHH
Confidence 578899999998762 12 3455554 23 33469999999999987 4445444
No 54
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.59 E-value=0.0014 Score=66.24 Aligned_cols=81 Identities=19% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--CcccCCcccccccc----
Q 007012 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MHSLTPFGSELFSE---- 553 (621)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~iFe~F~~~~~s~---- 553 (621)
.+|.+||+||+.+.. .+..|.|.+.. +.+.-.|.|.|||.||+.+ ...|..+.+.....
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~-d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~ 149 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP-NKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEA 149 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE-ETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE-CCCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhh
Confidence 467888888887653 12345555532 2334579999999999987 33333322111000
Q ss_pred -c-cccCCCCCCccchHHHHHHHH
Q 007012 554 -N-MVEDNMTWNFVAGLTVARELL 575 (621)
Q Consensus 554 -~-~~~~~~~~GtGLGLaIvr~lv 575 (621)
. ......-+..|+|++-+..++
T Consensus 150 l~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 150 LQAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp HHTTCCGGGGGGGTCGGGGHHHHE
T ss_pred hccccchhhcCCCCCCccccccCC
Confidence 0 000001135799998776655
No 55
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=96.55 E-value=0.012 Score=54.34 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=40.6
Q ss_pred CCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccCHHH
Q 007012 198 PEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQ 277 (621)
Q Consensus 198 ~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~~e~ 277 (621)
.....+++||+.++.++|+|.+.. .... + .|++++
T Consensus 125 ~~~s~l~vPl~~~~~~iGvl~l~~----------~~~~---------~--------------------------~f~~~d 159 (189)
T 2e4s_A 125 TTRNILCMPIVSRGSVIGVVQMVN----------KISG---------S--------------------------AFSKTD 159 (189)
T ss_dssp CCCCEEEEEEEETTEEEEEEEEEE----------ETTS---------S--------------------------SCCHHH
T ss_pred ccceEEEEEeccCCeEEEEEEEEe----------CCCC---------C--------------------------CCCHHH
Confidence 346789999999999999999883 1100 0 167788
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007012 278 RLNAINICRSLAMAYVMDQ 296 (621)
Q Consensus 278 r~~~~~ia~~lala~~l~q 296 (621)
...+..++.++++|..-.+
T Consensus 160 ~~ll~~la~~~a~ai~na~ 178 (189)
T 2e4s_A 160 ENNFKMFAVFCALALHCAN 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999998774433
No 56
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=96.52 E-value=0.038 Score=48.59 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=74.9
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceeEEEeecCCCCC--C---Ceee---eccccc------
Q 007012 113 PSPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA--T---DIVV---LVGNFN------ 177 (621)
Q Consensus 113 ~s~~f~~l~~~ql~~~~~~~~~~a~~~-~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~---~~~~---l~~~~~------ 177 (621)
.+.|+.++++..++.+.+.+ ++..+ +|+... .+ .|..++.+..... . .... +.|.+.
T Consensus 3 ~~~~~~~~l~~i~~~~~~~~--~~~~~~i~l~d~----~~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (153)
T 2w3g_A 3 MDPDLEATLRAIVHSATSLV--DARYGAMEVHDR----QH--RVLHFVYEGIDEETVRRIGHLPKGLGVIGLLIEDPKPL 74 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHT--TEEEEEEEEECT----TC--CEEEEEEESCCHHHHHHHCSCCCSCTHHHHHHHSCSCE
T ss_pred CccCHHHHHHHHHHHHHHHh--CCCEEEEEEECC----CC--CEEEEEEecCCHHHHHhhccCCCCCCHHHHHHhcCCcE
Confidence 46789999999999999999 66555 998862 12 4666666543211 0 0000 111110
Q ss_pred -CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 007012 178 -MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (621)
Q Consensus 178 -~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 256 (621)
++.....+. ..............+++||+.+++++|+|++.. . ++..
T Consensus 75 ~~~d~~~~~~--~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~-----------~-----------~~~~-------- 122 (153)
T 2w3g_A 75 RLDDVSAHPA--SIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTD-----------K-----------TNGQ-------- 122 (153)
T ss_dssp EESSGGGSTT--CCCCCTTCCCCCCEEEEEEEETTEEEEEEEEEE-----------E-----------TTSC--------
T ss_pred EecCcccCch--hcCCCCcCCCCCeEEEeeEEECCEEEEEEEEee-----------C-----------CCCC--------
Confidence 111111110 001111223346789999999999999999883 1 1100
Q ss_pred cchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 007012 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYV 293 (621)
Q Consensus 257 ~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~ 293 (621)
.|+++....+..++.++++|..
T Consensus 123 ---------------~f~~~~~~~l~~la~~~a~ai~ 144 (153)
T 2w3g_A 123 ---------------PFSDDDEVLVQALAAAAGIAVA 144 (153)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 1677888889999999998763
No 57
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=96.48 E-value=0.017 Score=54.09 Aligned_cols=33 Identities=18% Similarity=0.086 Sum_probs=28.6
Q ss_pred ccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 111 VLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 111 ~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
+..|.|+.++++..++.+++.++.| ++.+|.-.
T Consensus 6 Ir~sldl~~il~~~v~~v~~~l~~D-Rv~Iy~f~ 38 (171)
T 4glq_A 6 LSELRDRQAIFETLVAKGRELLACD-RVIVYAFD 38 (171)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHTCS-EEEEEEEC
T ss_pred HhhcCCHHHHHHHHHHHHHHHHCCC-eEEEEEEe
Confidence 4568899999999999999999999 99988776
No 58
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=96.46 E-value=0.032 Score=50.79 Aligned_cols=52 Identities=25% Similarity=0.270 Sum_probs=40.3
Q ss_pred CCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccCHHHHH
Q 007012 200 QRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFSADQRL 279 (621)
Q Consensus 200 ~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~ 279 (621)
.+.+++||..++.++|+|.+.. +. ... .|+++...
T Consensus 85 ~s~l~vPL~~~~~~~GvL~l~~----------~~------------~~~-----------------------~f~~~d~~ 119 (149)
T 2vjw_A 85 GPALVLPLRATDTVAGVLVAVQ----------GS------------GAR-----------------------PFTAEQLE 119 (149)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE----------ET------------TCC-----------------------CCCHHHHH
T ss_pred CeEEEEEEccCCeEEEEEEEee----------CC------------CCC-----------------------CCCHHHHH
Confidence 4689999999999999999983 10 001 27888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007012 280 NAINICRSLAMAYVMDQ 296 (621)
Q Consensus 280 ~~~~ia~~lala~~l~q 296 (621)
.+..+|.+.++|....+
T Consensus 120 ll~~lA~~aa~al~~a~ 136 (149)
T 2vjw_A 120 MMTGFADQAAVAWQLAS 136 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999875444
No 59
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.22 E-value=0.013 Score=62.49 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--Cc--------ccCCccccccccccccCC
Q 007012 490 PALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH--------SLTPFGSELFSENMVEDN 559 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~--------iFe~F~~~~~s~~~~~~~ 559 (621)
..+.+++.|.|++|+. .....|.|.+. .++ .|+|+|||.|||.+ +. +|..++.+..-....+.
T Consensus 37 ~lv~ElvdNsiDea~~--g~a~~I~V~i~--~~g--~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~~~~~~- 109 (391)
T 1ei1_A 37 HMVFEVVDNAIDEALA--GHCKEIIVTIH--ADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK- 109 (391)
T ss_dssp HHHHHHHHHHHHHHHT--TCCCEEEEEEC--TTS--CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCS-
T ss_pred HHHHHHHHhHHHHHhc--CCCCEEEEEEe--CCC--EEEEEECCCCcccCcccccCcchHHHhheeccccCCcCCCccc-
Confidence 3444455555555443 22358888883 223 79999999999987 22 45544432110000010
Q ss_pred CCCC-ccchHHHHHHHHH
Q 007012 560 MTWN-FVAGLTVARELLE 576 (621)
Q Consensus 560 ~~~G-tGLGLaIvr~lve 576 (621)
-.+| .|.||+.+..+.+
T Consensus 110 vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 110 VSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp SCSCCSSCHHHHHHHTEE
T ss_pred ccCCccccchHHHHHhcC
Confidence 0123 8999999988875
No 60
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=96.19 E-value=0.043 Score=56.73 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeee-----eccccc-------CCc
Q 007012 113 PSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV-----LVGNFN-------MPA 180 (621)
Q Consensus 113 ~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~-----l~~~~~-------~~~ 180 (621)
.+.|+.++++..++.+.+.++.+ ++++|+...+ ...+...+.+.........+ ++|.+. ++.
T Consensus 24 ~~~dl~~~l~~i~~~~~~~~~~~-~~~i~l~d~~-----~~~l~~~~~~g~~~~~~~~~~~~~g~~g~~~~~~~~~~i~d 97 (368)
T 1mc0_A 24 FDLDATSLQLKVLQYLQQETQAT-HCCLLLVSED-----NLQLSCKVIGDKVLGEEVSFPLTMGRLGQVVEDKQCIQLKD 97 (368)
T ss_dssp CCSSHHHHHHHHHHHHHHHSCEE-EEEEEEECSS-----SCEEEEEEETTEEEEEEEEEESSSSSHHHHHHHCCCEEGGG
T ss_pred hhhhHHHHHHHHHHHHHHHhCCc-EEEEEEEeCC-----CCeEEEEecCCCccccceeeccccCHHHHHHhcCCeEEecc
Confidence 45689999999999999999444 4559998622 12454444432100000101 112211 222
Q ss_pred chhhhhhhhccccccCCCCCCeEEEeeeeC--CeEEEEEEEe
Q 007012 181 GLRAAEAALSSQQVQVVPEQRAVVFPMVKH--PFVVGFLVAE 220 (621)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~--~~vvGvLv~~ 220 (621)
...++.... ......+....+++||+.+ +.++|+|.+.
T Consensus 98 ~~~~~~~~~--~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~ 137 (368)
T 1mc0_A 98 LTSDDVQQL--QNMLGCELQAMLCVPVISRATDQVVALACAF 137 (368)
T ss_dssp SCHHHHHHH--HHHHCSCCCCEEEEEEECTTTCSEEEEEEEE
T ss_pred ccccccccc--ccccCcccceEEEEEeecCCCCcEEEEEEee
Confidence 221121000 0111234678999999999 9999999876
No 61
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=96.13 E-value=0.024 Score=53.00 Aligned_cols=136 Identities=10% Similarity=0.120 Sum_probs=77.7
Q ss_pred cccCCh-hHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceeEEE-eec-CCC-------C-CCCeee-----e
Q 007012 110 LVLPSP-DFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRV-VSY-PGV-------N-ATDIVV-----L 172 (621)
Q Consensus 110 l~~~s~-~f~~l~~~ql~~~~~~~~~~a~~~-~Yl~~~~~~~~~~~~l~~v-~~y-p~~-------~-~~~~~~-----l 172 (621)
.+..+. |+.++.+..++.+.+.+ +|..+ +||... ..+..+|... ..+ ++. . .....+ +
T Consensus 15 ~l~~~~~dl~~ll~~il~~~~~~~--~a~~~~i~L~d~---~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~gi 89 (180)
T 3dba_A 15 EIQDEAGSMEKIVHKTLQRLSQLL--AADRCSMFICRS---RNGIPEVATRLLNVTPTSKFEDNLVNPDKETVFPLDIGI 89 (180)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHH--TEEEEEEEEEEE---ETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEECTTSSH
T ss_pred HHHHhhhcHHHHHHHHHHHHHHHh--CcceEEEEEEeC---CCCcceeeeeeeccccCccchhhccccccceeeeCCCCH
Confidence 345667 99999999999999999 55555 999862 1222344422 211 111 0 011111 2
Q ss_pred ccccc-------CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCccc
Q 007012 173 VGNFN-------MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEE 245 (621)
Q Consensus 173 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (621)
+|.+. ++....++...............+.+++||+.++.++|+|.+.. + .
T Consensus 90 ~g~v~~tg~~v~i~d~~~d~~f~~~~~~~~~~~~~S~L~vPl~~~~~viGVL~l~n-----------~-----------~ 147 (180)
T 3dba_A 90 AGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALN-----------K-----------L 147 (180)
T ss_dssp HHHHHHHTCCEEESCGGGCTTCCCHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEE-----------E-----------S
T ss_pred HHHHHHhCCEEEecCCCCCcccChhhccccCccccEEEEEEeccCCEEEEEEEEEe-----------C-----------C
Confidence 23221 22222222100000000112357899999999999999999882 1 0
Q ss_pred ccCCCCCCccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 007012 246 VYAFPPSFDTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295 (621)
Q Consensus 246 ~~~~~~~~~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~ 295 (621)
.. ..|++++...++.+|.+.++++-++
T Consensus 148 ~~-----------------------~~Ft~~d~~lL~~lA~~aa~~i~~~ 174 (180)
T 3dba_A 148 NA-----------------------SEFSKEDEEVFKKYLNFISLVLRLE 174 (180)
T ss_dssp SS-----------------------SSCCHHHHHHHHHHHHHHHHHTC--
T ss_pred CC-----------------------CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 00 0288899999999999999987554
No 62
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.95 E-value=0.048 Score=51.60 Aligned_cols=101 Identities=14% Similarity=0.127 Sum_probs=57.1
Q ss_pred ccccCChhHHHHHHHHHHHhhhhhc---CCc-eEEEEEecCCCCccCcceeEEEeecCCCCCCCeee-----eccccc--
Q 007012 109 NLVLPSPDFQRLCVEQLHLFRRIVD---PDA-VLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV-----LVGNFN-- 177 (621)
Q Consensus 109 ~l~~~s~~f~~l~~~ql~~~~~~~~---~~a-~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~-----l~~~~~-- 177 (621)
.++..+.|+..+.+..++++...+. +++ +.+||+...+. .+ +|+. ..|.+... ...+ ++|++.
T Consensus 34 ~ll~~~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~--~~--~L~l-~~~~g~~~-~~~i~~g~Gi~G~aa~~ 107 (180)
T 1f5m_A 34 GLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASE--EN--TLIL-GPFQGKVA-CQMIQFGKGVCGTAAST 107 (180)
T ss_dssp HHHTTCCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSS--SC--EEEE-EEEEESCC-CSEEETTSHHHHHHHHH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCC--CC--eEEE-eecCCCcc-ceeecCCCcchhhhhhc
Confidence 4567778888888888888887772 233 55599987311 12 3433 22222111 1111 234442
Q ss_pred -----CCcchhhhhhhhccccccCCCCCCeEEEeeee-CCeEEEEEEEe
Q 007012 178 -----MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVK-HPFVVGFLVAE 220 (621)
Q Consensus 178 -----~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~-~~~vvGvLv~~ 220 (621)
++.....|... .......+.+++||+. +++++|+|.+.
T Consensus 108 g~~v~v~Dv~~dp~~~-----~~~~~~~S~l~vPi~~~~g~viGVL~l~ 151 (180)
T 1f5m_A 108 KETQIVPDVNKYPGHI-----ACDGETKSEIVVPIISNDGKTLGVIDID 151 (180)
T ss_dssp TSCEEESCGGGSTTCC-----CSSTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCEEEeCCcccCcccc-----ccCcccceEEEEEEEcCCCeEEEEEEec
Confidence 22222222111 1122346789999999 99999999888
No 63
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=95.82 E-value=0.067 Score=49.00 Aligned_cols=133 Identities=14% Similarity=0.009 Sum_probs=73.2
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC--CCee-e-----eccccc----
Q 007012 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA--TDIV-V-----LVGNFN---- 177 (621)
Q Consensus 110 l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~--~~~~-~-----l~~~~~---- 177 (621)
.+..+.|+.++.+..++.+.+.++.+ ..++|+.+. .+ .|..++.+..... .... . +.|.+.
T Consensus 11 ~l~~~~~~~~~l~~i~~~~~~~~~~~-~~~i~l~~~----~~--~l~~~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (181)
T 2qyb_A 11 IMNRTLDLQIIMDDLLNLLLKEFKLD-LAVIRLVDE----KG--VLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLSNR 83 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCS-EEEEEEECT----TS--CEEEEEEEESCTTSTTCSCBCCCTTSHHHHHHHHTS
T ss_pred HHHhccCHHHHHHHHHHHHHHHhCCc-EEEEEEECC----CC--CEEEEEEeCCCcceecccccccCCCCchhhhhhcCC
Confidence 34556789999999999999999544 334777641 23 3444444432211 0000 0 111110
Q ss_pred ---CCcchhhhhhhhccccccCCCCCCeEEEeeeeCCe-EEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCC
Q 007012 178 ---MPAGLRAAEAALSSQQVQVVPEQRAVVFPMVKHPF-VVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSF 253 (621)
Q Consensus 178 ---~~~~~~~~~~~~~~~~~~~~~~~~~lv~PL~~~~~-vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (621)
++.....+.... ........-...+++||..++. ++|+|.+.. .. .+.
T Consensus 84 ~~~v~d~~~~~~~~~-~~~~~~~g~~s~~~vPl~~~~~~~~GvL~l~~----------~~-----------~~~------ 135 (181)
T 2qyb_A 84 LQFVNDTQYMTKPLT-RELMQKEGIKSFAHIPISRKGEPPFGILSVFS----------RT-----------IVG------ 135 (181)
T ss_dssp CEEESCGGGCSCHHH-HHHHHHTTCCEEEEEEECCTTSCCCEEEEEEE----------SS-----------CSS------
T ss_pred CEEecChhcCCchhh-HHHHHhcCcceEEEEEEEeCCCeEEEEEEEec----------CC-----------CCC------
Confidence 111100000000 0000011235688999999999 999999882 01 110
Q ss_pred ccccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHH
Q 007012 254 DTESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMD 295 (621)
Q Consensus 254 ~~e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~ 295 (621)
.|+++....+..++.++++|....
T Consensus 136 ------------------~f~~~d~~lL~~la~~~a~al~~a 159 (181)
T 2qyb_A 136 ------------------LFNEPFLNLLESLAGQLAQAVKIV 159 (181)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 177788889999999999887543
No 64
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=95.39 E-value=0.26 Score=46.51 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=24.7
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 110 l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
.+..+.|+.++++..++.+++.++.+ ++++|+-.
T Consensus 24 ~i~~~~dl~~il~~~~~~l~~~l~~d-r~~i~~~d 57 (208)
T 2lb5_A 24 QIRQSLELDQILRATVEEVRAFLGTD-RVKVYRFD 57 (208)
T ss_dssp -------CHHHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHCCC-EEEEEEEc
Confidence 34567789999999999999999888 88899876
No 65
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=95.32 E-value=0.037 Score=59.46 Aligned_cols=84 Identities=7% Similarity=0.022 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--Cc--------ccCCcccccccccccc
Q 007012 491 ALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH--------SLTPFGSELFSENMVE 557 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~--------iFe~F~~~~~s~~~~~ 557 (621)
-|..++..+|+||+... .....|.|.+. .++ -.|+|+|||.|||.+ +. +|.....+..=....+
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~-~d~--~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~y 140 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIH-AEE--HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 140 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TTT--TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTSC
T ss_pred hHHHHHHHHHhCHHHHHHhcCCCCEEEEEEE-CCC--CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCce
Confidence 56777777777777643 33568999884 222 369999999999976 21 3433322210000001
Q ss_pred CCCCCCccchHHHHHHHHHH
Q 007012 558 DNMTWNFVAGLTVARELLES 577 (621)
Q Consensus 558 ~~~~~GtGLGLaIvr~lve~ 577 (621)
.--.+-.|.|.+.|.-+-+.
T Consensus 141 kvSGGLhGVG~SvVNALS~~ 160 (418)
T 1pvg_A 141 KVTGGRNGYGAKLCNIFSTE 160 (418)
T ss_dssp CCCSCCSSCHHHHHHHTEEE
T ss_pred eccCCccceeeeeeeeccce
Confidence 10112489999999887643
No 66
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.17 E-value=0.024 Score=55.72 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--C--------cccCCcccccccccccc
Q 007012 490 PALRQALSNLIEGALMRTQ--VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--M--------HSLTPFGSELFSENMVE 557 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~--~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~--------~iFe~F~~~~~s~~~~~ 557 (621)
..|..++..||+||+...- ....|.|.+. .++ .|+|+|||.|||.+ + .+|.....+..=....+
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~--~~g--~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd~~~y 109 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIH--ADN--SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSY 109 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEEC--TTS--CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCCTTC-
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEe--CCC--cEEEEECCcCcccccccccCcchhhheeeecccCCCcCCCcc
Confidence 3566666666666665422 2357888883 223 59999999999987 1 12322221100000000
Q ss_pred CCCCCCccchHHHHHHHHH
Q 007012 558 DNMTWNFVAGLTVARELLE 576 (621)
Q Consensus 558 ~~~~~GtGLGLaIvr~lve 576 (621)
..-.+-.|.|++.+..+.+
T Consensus 110 k~SgGlhGvG~svvNAlS~ 128 (220)
T 4duh_A 110 KVSGGLHGVGVSVVNALSQ 128 (220)
T ss_dssp -------CCCHHHHHHTEE
T ss_pred ccccCccceecchhccccc
Confidence 0001238899999988764
No 67
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=95.15 E-value=0.45 Score=49.65 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceeEEEeecCCCCC-CCeee-----eccccc-------CCcch
Q 007012 117 FQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA-TDIVV-----LVGNFN-------MPAGL 182 (621)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~-~Yl~~~~~~~~~~~~l~~v~~yp~~~~-~~~~~-----l~~~~~-------~~~~~ 182 (621)
+.++++..++.+...+ +|..+ +|+.... ..+|...+.+..... ....+ ++|.+. ++...
T Consensus 27 l~~~l~~i~~~~~~~~--~a~~~~i~l~d~~-----~~~l~~~~~~g~~~~~~~~~~~~~~g~~g~v~~~~~~v~i~d~~ 99 (398)
T 1ykd_A 27 LQEMLQSITLKTGELL--GADRTTIFLLDEE-----KQELWSIVAAGEGDRSLEIRIPADKGIAGEVATFKQVVNIPFDF 99 (398)
T ss_dssp HHHHHHHHHHHHHHHH--TEEEEEEEEEETT-----TTEEEEEEECCGGGCCCCCEEETTSHHHHHHHHHCCCEEECSCG
T ss_pred HHHHHHHHHHHHHHHh--CCceEEEEEEECC-----CCeEEEEeecCCCCccceeecCCCCchhhhhhccCcEEeccchh
Confidence 4556666666789999 55555 9998721 235666666543211 11111 122221 22222
Q ss_pred hh---hhhhhccccccCCCCCCeEEEeeee-CCeEEEEEEEe
Q 007012 183 RA---AEAALSSQQVQVVPEQRAVVFPMVK-HPFVVGFLVAE 220 (621)
Q Consensus 183 ~~---~~~~~~~~~~~~~~~~~~lv~PL~~-~~~vvGvLv~~ 220 (621)
.+ +.................+++||.. +|.++|+|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~ 141 (398)
T 1ykd_A 100 YHDPRSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLL 141 (398)
T ss_dssp GGSGGGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEE
T ss_pred cccchhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEe
Confidence 11 1100000001122345799999996 69999999988
No 68
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=95.06 E-value=1.3 Score=48.69 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.6
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 114 s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
|.++.++|+..++.+++.+|.| ++++|==.
T Consensus 150 sl~l~~il~~~v~evr~ll~~D-RVmIYrF~ 179 (520)
T 3zq5_A 150 QANLRDFYDVIVEEVRRMTGFD-RVMLYRFD 179 (520)
T ss_dssp SCCHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHhCCC-EEEEEEEc
Confidence 4578899999999999999999 99988765
No 69
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=94.95 E-value=0.032 Score=62.14 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 494 qVL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.+|..||+||+.+. .....|.|.+. . +.-.|+|.|||+||+.+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d--~-~~~~I~I~DnGiGMt~e 88 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--K-DKRTLTISDNGVGMTRD 88 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEE--T-TTTEEEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEe--C-CCcEEEEEECCCCCCHH
Confidence 45777888888765 11235666662 3 33579999999999986
No 70
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=94.70 E-value=0.028 Score=63.77 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcC--------------CC--CeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 495 ALSNLIEGALMRTQ--------------VG--GKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 495 VL~NLL~NAlk~t~--------------~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
+|..||+||..+.. .+ ..|.|... . +.-.|+|.|||+||+.+
T Consensus 30 fLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d--~-~~~~I~I~DnGiGMt~e 87 (677)
T 2cg9_A 30 FLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPK--P-EQKVLEIRDSGIGMTKA 87 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEE--G-GGTEEEEEECSCCCCHH
T ss_pred HHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEe--C-CCCEEEEEECCCCCCHH
Confidence 67778888887641 12 35666552 2 33579999999999986
No 71
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=94.61 E-value=0.054 Score=57.84 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhhc---CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--Cc--------ccCCcccc-cccccc
Q 007012 490 PALRQALSNLIEGALMRT---QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--MH--------SLTPFGSE-LFSENM 555 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t---~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~~--------iFe~F~~~-~~s~~~ 555 (621)
.-|..++..|++||+... .....|.|.+. .+ + -.|+|.|||.|||.+ +. +|.....+ .... .
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~-~~-~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~-~ 126 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTID-PE-N-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD-D 126 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-TT-T-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG-G
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEE-CC-C-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCC-C
Confidence 467888888888888765 33467888883 22 2 379999999999976 21 33322211 0000 0
Q ss_pred ccCCCCCCccchHHHHHHHH
Q 007012 556 VEDNMTWNFVAGLTVARELL 575 (621)
Q Consensus 556 ~~~~~~~GtGLGLaIvr~lv 575 (621)
.+.--.+-.|.|++.+..+-
T Consensus 127 ~ykvSgGlhGvGlsvVnAlS 146 (400)
T 1zxm_A 127 EKKVTGGRNGYGAKLCNIFS 146 (400)
T ss_dssp GCCCCSCCSSCHHHHHHHTE
T ss_pred cccccCCccccceeeeEEec
Confidence 01001124899999998873
No 72
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=94.58 E-value=1.1 Score=49.21 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=27.7
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 112 ~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
..|.++.++|+..++.+++.+|.| ++++|==.
T Consensus 135 r~sl~l~~il~~~v~evr~ll~~D-RV~IYrF~ 166 (505)
T 3nhq_A 135 QLHNDTASLLSNVTDELRRMTGYD-RVMAYRFR 166 (505)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEec
Confidence 345688999999999999999999 99988765
No 73
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=94.50 E-value=0.47 Score=54.06 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeee----ecccc-------cCCcch
Q 007012 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVV----LVGNF-------NMPAGL 182 (621)
Q Consensus 114 s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~----l~~~~-------~~~~~~ 182 (621)
+.|+.++++..++.+...++.+ ++++|+.... .+ +|...+.+.........+ ++|.+ .++...
T Consensus 26 ~ldl~~ll~~il~~l~~~l~ad-~~~i~L~d~~---~~--~l~~~~~~g~~~~~~~~~p~~Gi~g~v~~~~~pv~i~d~~ 99 (691)
T 3ibj_A 26 DLDASSLQLKVLQYLQQETRAS-RCCLLLVSED---NL--QLSCKVIGDKVLGEEVSFPLTGCLGQVVEDKKSIQLKDLT 99 (691)
T ss_dssp CSSHHHHHHHHHHHHHHHTTBS-CEEEEEECTT---SS--EEEEEEETTEEEEEEEEEECCSSSHHHHHHCCCEEGGGSC
T ss_pred hccHHHHHHHHHHHHHHHhCCC-EEEEEEEECC---CC--eEEEEecCCCccccceecCCccHHHHHHHHCCeEEeccch
Confidence 7789999999999999999555 5559987632 12 343322222100000011 22222 133322
Q ss_pred hhhhhhhccccccCCCCCCeEEEeeeeC--CeEEEEEEEe
Q 007012 183 RAAEAALSSQQVQVVPEQRAVVFPMVKH--PFVVGFLVAE 220 (621)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~lv~PL~~~--~~vvGvLv~~ 220 (621)
.++.... ......+....+++||..+ +.++|+|.+.
T Consensus 100 ~~~~~~~--~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~ 137 (691)
T 3ibj_A 100 SEDVQQL--QSMLGCELQAMLCVPVISRATDQVVALACAF 137 (691)
T ss_dssp HHHHHHH--HHHHTSCCSCEEEEEEECSSSCSEEEEEEEE
T ss_pred hcccccc--ccccCCccceEEEEEeEcCCCCcEEEEEEEE
Confidence 2221100 0111234578999999998 9999999988
No 74
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=94.44 E-value=0.24 Score=51.83 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceeEEEeecCCCCCCCeee-----eccccc-------CC-
Q 007012 114 SPDFQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNATDIVV-----LVGNFN-------MP- 179 (621)
Q Consensus 114 s~~f~~l~~~ql~~~~~~~~~~a~~~-~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~-----l~~~~~-------~~- 179 (621)
+.++.++.+..++.+.+.+ +|..+ +|+.... . ..|...+..+........+ +.|.+. ++
T Consensus 212 ~~dl~~~l~~i~~~~~~~~--~~~~~~i~l~d~~---~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~ 284 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELM--NADRSTLWLIDRD---R--HELWTKITQDNGSTKELRVPIGKGFAGIVAASGQKLNIPF 284 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHT--TEEEEEEEEEETT---T--TEEEEEEECSSSCEEEEEEETTSHHHHHHHHHCCCEEECS
T ss_pred cCCHHHHHHHHHHHHHHHh--CcCeEEEEEEECC---C--CEEEEEEecCCCceeeeeccCCCchhhHHhccCCeEEecc
Confidence 6789999999999999999 55444 9998732 1 2455555432211111111 112111 22
Q ss_pred cchhhhhh-hh--ccccccCCCCCCeEEEeeee-CCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 007012 180 AGLRAAEA-AL--SSQQVQVVPEQRAVVFPMVK-HPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (621)
Q Consensus 180 ~~~~~~~~-~~--~~~~~~~~~~~~~lv~PL~~-~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (621)
.....+.. .. .. ........+.+++||+. ++.++|+|.+.... ..|..+.... +.|...+
T Consensus 285 d~~~~~~~~~~~~~~-~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~----------~~~~~~~~~~-~~~~~~~---- 348 (398)
T 1ykd_A 285 DLYDHPDSATAKQID-QQNGYRTCSLLCMPVFNGDQELIGVTQLVNKK----------KTGEFPPYNP-ETWPIAP---- 348 (398)
T ss_dssp CGGGSTTCHHHHHHH-HHHTCCCCCEEEEEEECSSSCEEEEEEEEEEC----------CSSCCCCCCG-GGTTCCC----
T ss_pred ccccCcccCcccchh-hhcCCeeeeEEEEeeecCCCCEEEEEEEEecC----------Cccccccccc-ccccccc----
Confidence 21111110 00 00 00122356799999994 99999999988311 0000000001 3454311
Q ss_pred ccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHH
Q 007012 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQ 296 (621)
Q Consensus 256 e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~q 296 (621)
.-....|++++...+..++.++++|..-.+
T Consensus 349 -----------~~~~~~f~~~d~~ll~~la~~~a~al~na~ 378 (398)
T 1ykd_A 349 -----------ECFQASFDRNDEEFMEAFNIQAGVALQNAQ 378 (398)
T ss_dssp -----------GGGCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------cccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123999999999999999999874433
No 75
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=94.28 E-value=0.11 Score=59.44 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=83.8
Q ss_pred ChhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC---CCeee-----eccccc-------C
Q 007012 114 SPDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA---TDIVV-----LVGNFN-------M 178 (621)
Q Consensus 114 s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~---~~~~~-----l~~~~~-------~ 178 (621)
+.+..++.+..++.+.+.++.+ +++||+... + ++...+....... ....+ ++|.+. +
T Consensus 194 ~~dl~~ll~~i~~~~~~~l~ad-~~~i~L~d~-----~--~l~~~~~~g~~~~~~~~~~~~~~~~gi~g~v~~~g~~v~i 265 (691)
T 3ibj_A 194 LDDVSVLLQEIITEARNLSNAE-ICSVFLLDQ-----N--ELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNI 265 (691)
T ss_dssp CSCTTTHHHHHHHHHHHHHTEE-EEEEEEECS-----S--EEEEECCSSSCCSSCCCEEEEETTSHHHHHHHHHCSCEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCC-eEEEEEEeC-----C--eEEEEeecCCcccccccceeccCCCCHHHHHHHhCCEEEe
Confidence 5788888999999999999444 444999873 2 3444444332211 11111 112211 2
Q ss_pred Ccchhhhhh-hhccccccCCCCCCeEEEeeeeC-CeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 007012 179 PAGLRAAEA-ALSSQQVQVVPEQRAVVFPMVKH-PFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (621)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~~~~~~~lv~PL~~~-~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 256 (621)
+....++.. ....... .....+.+++||+.+ |.++|+|.+.. .... ++
T Consensus 266 ~d~~~d~~~~~~~~~~~-g~~~rS~L~vPL~~~~g~viGVL~l~~----------~~~~---------~~---------- 315 (691)
T 3ibj_A 266 PDAYAHPLFYRGVDDST-GFRTRNILCFPIKNENQEVIGVAELVN----------KING---------PW---------- 315 (691)
T ss_dssp SCSTTSTTC------CC-SCCCCCEEEEECCCSSSCCCEEEEEEE----------ESSS---------SS----------
T ss_pred cCcccCccccchhhccc-CCeeeeEEEEeEECCCCCEEEEEEEEE----------CCCC---------CC----------
Confidence 222221110 0000011 122457899999999 89999999882 1101 12
Q ss_pred cchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q 007012 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVMDQKSMLLQQSSWQNNARMSNLVEQIRGP 322 (621)
Q Consensus 257 ~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l~qr~~~lqq~~~q~~~~la~lsHELRtP 322 (621)
|++++...++.+|.++++|..-.+..+++++...+++.....+++..+..
T Consensus 316 ----------------f~~~d~~ll~~lA~~~aiAIena~l~~~l~~~~~~~~~~~e~l~~~~~~~ 365 (691)
T 3ibj_A 316 ----------------FSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMMMYHMKVS 365 (691)
T ss_dssp ----------------CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34455567779999999987655555555555444444444444444333
No 76
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=94.21 E-value=0.082 Score=50.96 Aligned_cols=48 Identities=13% Similarity=0.301 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHHHHHhhc--CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 488 EEPALRQALSNLIEGALMRT--QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t--~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
+...+..++..|++||+... .....|.|.+. .+ + .|.|.|||.|||.+
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~-~~-g--~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIE-KD-N--WIKVTDNGRGIPVD 77 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEE-GG-G--EEEEEECSSCCCCS
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEe-CC-C--eEEEEECCCCcccc
Confidence 34567777778888887753 22368888883 22 2 79999999999975
No 77
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=93.74 E-value=0.55 Score=48.19 Aligned_cols=124 Identities=17% Similarity=0.154 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCC---CCCCCeee-----eccccc-------CC
Q 007012 115 PDFQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPG---VNATDIVV-----LVGNFN-------MP 179 (621)
Q Consensus 115 ~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~---~~~~~~~~-----l~~~~~-------~~ 179 (621)
.|+.++.+..++.+.+.++.+ .+++|+... + +|...+.+++ .......+ +.|.+. ++
T Consensus 195 ~~~~~~l~~i~~~~~~~~~~~-~~~i~l~d~-----~--~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 266 (368)
T 1mc0_A 195 DDVSVLLQEIITEARNLSNAE-ICSVFLLDQ-----N--ELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIP 266 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTEE-EEEEEEECS-----S--SEEEEEETTEECCCSTTCCEECTTSHHHHHHHHHCCCEEES
T ss_pred cCHHHHHHHHHHHHHHHhccc-EEEEEEEeC-----C--ceEEEEeccccccccccceeecCCCceeeeehhhCCEEEec
Confidence 688999999999999999433 444999873 2 4555565531 11111111 111110 12
Q ss_pred cchhhhhhhhccccc---cCCCCCCeEEEeeeeC-CeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCcc
Q 007012 180 AGLRAAEAALSSQQV---QVVPEQRAVVFPMVKH-PFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDT 255 (621)
Q Consensus 180 ~~~~~~~~~~~~~~~---~~~~~~~~lv~PL~~~-~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (621)
....++. ..... ........+++||..+ +.++|+|.+.. . .+..
T Consensus 267 d~~~~~~---~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~-----------~-----------~~~~------- 314 (368)
T 1mc0_A 267 DAYAHPL---FYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVN-----------K-----------INGP------- 314 (368)
T ss_dssp CSTTCTT---CCCTTHHHHTCCCCCEEEEEEECTTSCEEEEEEEEE-----------E-----------TTSS-------
T ss_pred CcccCcc---cchhhhhccCCccceEEEEeeECCCCcEEEEEEEEE-----------C-----------CCCC-------
Confidence 1111111 00000 0123468999999995 99999999882 1 1100
Q ss_pred ccchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHHHH
Q 007012 256 ESHAIESFDHERMRVYKFSADQRLNAINICRSLAMAYVM 294 (621)
Q Consensus 256 e~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~~l 294 (621)
.|++++...+..++.++++|..-
T Consensus 315 ----------------~f~~~d~~ll~~la~~~a~ai~n 337 (368)
T 1mc0_A 315 ----------------WFSKFDEDLATAFSIYCGISIAH 337 (368)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 16678888999999999987743
No 78
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=93.41 E-value=0.075 Score=52.33 Aligned_cols=46 Identities=15% Similarity=0.347 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 490 PALRQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 490 ~~L~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.-|..++..+|+||+...-. ...|.|.+. .++ .|+|+|||.|||.+
T Consensus 39 ~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~--~~g--~i~V~DnG~GIp~~ 86 (226)
T 4emv_A 39 AGLHHLVWEIVDNAVDEALSGFGDRIDVTIN--KDG--SLTVQDHGRGMPTG 86 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS--CEEEEECSSCCCCS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCcEEEEEEe--CCC--eEEEEEcCCCcccc
Confidence 45666666666666654322 247888772 222 69999999999976
No 79
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=93.33 E-value=0.041 Score=62.39 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 494 qVL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.+|..||+||+.+. .....|.|.. .. +.-.|+|.|||+||+.+
T Consensus 48 ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~--d~-~~~~I~I~DnGiGMt~e 106 (666)
T 2o1u_A 48 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DK-EKNLLHVTDTGVGMTRE 106 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE--ET-TTTEEEEEECSCCCCHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE--eC-CCCEEEEEECCCCCCHH
Confidence 46788888888765 1113566655 23 33569999999999976
No 80
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=93.07 E-value=1.1 Score=46.55 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.5
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 112 ~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
..|.|+.++|+..++.+++.+|.| ++.+|==.
T Consensus 157 r~sl~l~~il~~tv~evr~ll~~D-RV~IYrF~ 188 (337)
T 2ool_A 157 QTAADLPTACWIAASEVRRITGFD-RIKVYQFA 188 (337)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCC-eeEEEEEc
Confidence 346688999999999999999999 99988654
No 81
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=92.97 E-value=0.042 Score=54.25 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
-+|..||+||..+.. .+..+.|.+.. +.+.-.|.|.|||.||+.+
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~-d~~~~~i~V~DnG~GMs~e 93 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP-NKQDRTLTIVDTGIGMTKA 93 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE-ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE-eCCeeEEEEEeCCCCCCHH
Confidence 446677777766431 12234444422 2345679999999999987
No 82
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=92.96 E-value=0.083 Score=51.05 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhcCC--CCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 493 RQALSNLIEGALMRTQV--GGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 493 ~qVL~NLL~NAlk~t~~--gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
..++..||+||+...-. ...|.|.+. .++ .|+|.|||.|||.+
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~--~~g--~i~V~DnG~GIp~~ 63 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILH--ADQ--SLEVIDDGRGMPVD 63 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS--CEEEEECSSCCCCS
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEe--CCC--EEEEEECCCCcCcc
Confidence 45566666666655222 357888883 223 69999999999987
No 83
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=92.65 E-value=1 Score=41.67 Aligned_cols=116 Identities=11% Similarity=-0.065 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCCCCeeeecccccCCcchhhhhh-hhcccccc
Q 007012 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNATDIVVLVGNFNMPAGLRAAEA-ALSSQQVQ 195 (621)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~ 195 (621)
..++-...++..++.++.+ +.++|+..+ . -+|..++...... .+.++.+.++.....+ +.. ..
T Consensus 29 ~~~~l~~il~~a~~~~~~d-~gsL~l~d~----~--~~l~~~aa~G~~~------~l~~lr~~~~~~~~gpr~~~---~t 92 (160)
T 3cit_A 29 PEAMRKCVLQRACAFVAMD-HGLLLEWGA----D--NGVQTTARHGSKE------RLSTLETTADPLAIGPQWLE---RP 92 (160)
T ss_dssp HHHHHHHHHHHHHHHTTCS-EEEEEECC--------CCCEEEEEESCHH------HHTTSCCCCCTTCCSCEEEE---CT
T ss_pred HHHHHHHHHHHHHHHhccC-eeEEEEEcC----C--CceeeeeccCchh------hhhhhhcccccccccccccc---cc
Confidence 3667777788888899778 777999763 1 2567777776211 0112222221111100 111 01
Q ss_pred CCCCCCeEEEee-eeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccccchhhcchhhhhhhcccC
Q 007012 196 VVPEQRAVVFPM-VKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTESHAIESFDHERMRVYKFS 274 (621)
Q Consensus 196 ~~~~~~~lv~PL-~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~~~~~~~~~f~ 274 (621)
.....+.+++|| ..+|+++|+|.+.- +-+ ...|+
T Consensus 93 g~~t~svl~vPL~~~~g~~~Gvlql~N-----------~~~----------------------------------~~~f~ 127 (160)
T 3cit_A 93 GTHLPCVLLLPLRGADEGSFGTLVLAN-----------SVA----------------------------------ISAPD 127 (160)
T ss_dssp TSSSCEEEEEEEECSSSSEEEEEEEEE-----------SSC----------------------------------CCCCC
T ss_pred CcccceeEEEeeecCCCcEEEEEEEec-----------cCC----------------------------------CCCCC
Confidence 122357899999 59999999998872 100 01277
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007012 275 ADQRLNAINICRSLAMAYV 293 (621)
Q Consensus 275 ~e~r~~~~~ia~~lala~~ 293 (621)
+++...+..++.+++.+..
T Consensus 128 ~eD~e~l~lLA~~~a~aie 146 (160)
T 3cit_A 128 GEDIESLQLLATLLAAHLE 146 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988653
No 84
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=92.45 E-value=1.8 Score=48.90 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=28.5
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 112 ~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
..|.|+.++|+..++.+.+.+|.| ++++|-=.
T Consensus 142 ~~s~~l~~i~~~~v~evr~l~~~D-Rv~iy~F~ 173 (635)
T 4eho_A 142 RTAGSLRALCDDTALLFQQCTGYD-RVMVYRFD 173 (635)
T ss_dssp HHCCSHHHHHHHHHHHHHHHSCCS-EEEEEEEC
T ss_pred HhhCCHHHHHHHHHHHHHHHhCCC-eEEEEEEC
Confidence 447889999999999999999999 99999765
No 85
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=92.08 E-value=0.067 Score=53.00 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhcC--------------CC--CeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 494 QALSNLIEGALMRTQ--------------VG--GKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.+|..||+||+.+.. .+ ..|.|.. .. +.-.|.|.|||.||+.+
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~--d~-~~~~i~I~DnG~GMt~e 93 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DK-EKNLLHVTDTGVGMTRE 93 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE--ET-TTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE--cC-CCCEEEEEECCcCCCHH
Confidence 567788888887642 11 3455554 22 33579999999999986
No 86
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=91.61 E-value=0.12 Score=54.57 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHhhcCCC--CeEEEEEEEecCCeEEEEEEeCCCCCCC
Q 007012 488 EEPALRQALSNLIEGALMRTQVG--GKVEIVSAAAPAGDALVVIDDDGPDMHY 538 (621)
Q Consensus 488 D~~~L~qVL~NLL~NAlk~t~~g--g~I~I~~~~~~~~~v~I~V~D~G~GI~~ 538 (621)
+...+..++..|++||+...-.| ..|.|.+. .++ .|+|+|||.|||.
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~--~~g--~I~V~DnGrGIp~ 75 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVG--GDG--SIALFCTSRTVTA 75 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEC--TTS--CEEEEEEESSCCH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEe--CCC--EEEEEECCCCcCH
Confidence 45678888899999998853333 47888883 233 7999999999997
No 87
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=91.51 E-value=2 Score=39.04 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 118 QRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 118 ~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
.++++..++.+.+.++.+ ++++|+-.
T Consensus 2 ~~il~~~~~~~~~~l~~d-r~~i~~~~ 27 (172)
T 2k2n_A 2 DQILRATVEEVRAFLGTD-RVKVYRFD 27 (172)
T ss_dssp HHHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCC-eEEEEEEC
Confidence 467888999999999888 88899876
No 88
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=90.59 E-value=0.2 Score=53.56 Aligned_cols=83 Identities=18% Similarity=0.111 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC--C--------cccCCccccccccccccC
Q 007012 489 EPALRQALSNLIEGALMRTQVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM--M--------HSLTPFGSELFSENMVED 558 (621)
Q Consensus 489 ~~~L~qVL~NLL~NAlk~t~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e--~--------~iFe~F~~~~~s~~~~~~ 558 (621)
...+.+|+.|-+++|+. .....|.|.+. .++ .|+|+|||.|||.+ + .+|.....+..-....+.
T Consensus 52 ~hlv~EivdNsiDea~a--g~~~~I~V~i~--~dg--sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~yk 125 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALA--GHAKQIEVTLY--KDG--SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYT 125 (408)
T ss_dssp HHHHHHHHHHHHHHHHT--TSCCEEEEEEC--TTS--CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC------------
T ss_pred chhhHHHHHHHHHHhhc--CCCceEEEEEe--CCC--eEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCCcee
Confidence 44556666666666654 12357888882 223 59999999999976 1 123222211000000000
Q ss_pred CCCCCccchHHHHHHHHHH
Q 007012 559 NMTWNFVAGLTVARELLES 577 (621)
Q Consensus 559 ~~~~GtGLGLaIvr~lve~ 577 (621)
.-.+-.|.|++.+.-+.+.
T Consensus 126 vSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 126 FSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp --------CHHHHHHTEEE
T ss_pred ecCCccccccceehhccCe
Confidence 0012379999999887643
No 89
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=90.54 E-value=2 Score=44.39 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=27.8
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 112 ~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
..|.|+.++|+..++.+++.+|.| |++||==.
T Consensus 144 r~sldl~~il~~av~evr~llg~D-RVmIYrF~ 175 (327)
T 4e04_A 144 QAAETLESACAAAAQEVREITGFD-RVMIYRFA 175 (327)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHHCCC-eEEEEEEc
Confidence 345688999999999999999999 99988765
No 90
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=90.51 E-value=3 Score=43.37 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=28.3
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 112 ~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
..|.|+.++|+..++.+++.+|.| |+.+|==.
T Consensus 162 r~sldl~~ilq~tV~eVR~llg~D-RVmIYrF~ 193 (343)
T 3s7o_A 162 ESAPNLRALAEVATQTVRELTGFD-RVMLYKFA 193 (343)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHCCS-EEEEEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEc
Confidence 447789999999999999999999 99988765
No 91
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=90.17 E-value=0.33 Score=58.56 Aligned_cols=83 Identities=7% Similarity=0.007 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC----------CcccCCcccccccccccc
Q 007012 491 ALRQALSNLIEGALMRTQ---VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM----------MHSLTPFGSELFSENMVE 557 (621)
Q Consensus 491 ~L~qVL~NLL~NAlk~t~---~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e----------~~iFe~F~~~~~s~~~~~ 557 (621)
-|..++..+|+||+.-.- ....|.|.+.. +++ .|+|+|||.|||-+ +-+|.....+..=....+
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~-~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~y 135 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHA-EEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 135 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-TTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSC
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEEC-CCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCC
Confidence 466666666666666322 22468888832 223 49999999999965 224443332211011111
Q ss_pred CCCCCCccchHHHHHHHHH
Q 007012 558 DNMTWNFVAGLTVARELLE 576 (621)
Q Consensus 558 ~~~~~GtGLGLaIvr~lve 576 (621)
+-.++=+|.|.++|.-+-+
T Consensus 136 kvSGGLHGVG~svVNALS~ 154 (1177)
T 4gfh_A 136 KVTGGRNGYGAKLCNIFST 154 (1177)
T ss_dssp CCCSCCSSCHHHHHHHTEE
T ss_pred eEeccCCChhhhHHhhcCC
Confidence 1011248999999987754
No 92
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=89.06 E-value=3.7 Score=36.88 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhhhhcCCceEE-EEEecCCCCccCcceeEEEeecCCCCC------------CCeeeec------cccc
Q 007012 117 FQRLCVEQLHLFRRIVDPDAVLS-VYVRPAGSYVMDRLELRRVVSYPGVNA------------TDIVVLV------GNFN 177 (621)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~-~Yl~~~~~~~~~~~~l~~v~~yp~~~~------------~~~~~l~------~~~~ 177 (621)
...|| .++...+ +.+|. ||+-.- .+-+|.|--+|.-... +.+..|- +..
T Consensus 18 ~~~l~----rll~k~~--~~~w~~vy~~dr-----errdf~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hl- 85 (162)
T 3eea_A 18 IKDLS----RLLRKLV--KTRWIAVYFFDR-----ERRDFAPARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHL- 85 (162)
T ss_dssp HHHHH----HHHHHHS--CCSEEEEEEECC-------CSEEEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCE-
T ss_pred HHHHH----HHHHHHh--CCceEEEEEeeh-----hhhccccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCcc-
Confidence 44455 5778788 55666 999762 2346888888865432 1111110 111
Q ss_pred CCcchhhhhhhhccccccCC-CCCCeEEEeeeeCCeEEEEEEEecchhhhhccCCCCCCcccccCCcccccCCCCCCccc
Q 007012 178 MPAGLRAAEAALSSQQVQVV-PEQRAVVFPMVKHPFVVGFLVAELPLMELQMCGTEEPDAAIGFQSSEEVYAFPPSFDTE 256 (621)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~-~~~~~lv~PL~~~~~vvGvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 256 (621)
++.. +....+..+.+..+ -.-+.+.+||+.+++++|++.+.. +. ...
T Consensus 86 l~~d--p~~s~l~tp~l~k~~~~~~ILgVPL~~g~qVIGVLFaAr----------R~------------~R~-------- 133 (162)
T 3eea_A 86 MLTD--PGSSDLLTPKLRKLLRNLCVLAVPMVVRTQVIGAVFMAR----------TR------------DNP-------- 133 (162)
T ss_dssp EESC--GGGCTTSCHHHHHHTTTEEEEEEEEEETTEEEEEEEEEE----------ET------------TSC--------
T ss_pred ccCC--CCcchhccHHHHHHHhhCeEEEecceeCCEEEEEEEEec----------cc------------ccC--------
Confidence 1111 00012222222222 223689999999999999999983 11 110
Q ss_pred cchhhcchhhhhhhcccCHHHHHHHHHHHHHHHHHH
Q 007012 257 SHAIESFDHERMRVYKFSADQRLNAINICRSLAMAY 292 (621)
Q Consensus 257 ~~~i~~~~~~~~~~~~f~~e~r~~~~~ia~~lala~ 292 (621)
.|+.++...+..++.+.|+|.
T Consensus 134 ---------------~Fs~dEiALL~SLAahAAIAI 154 (162)
T 3eea_A 134 ---------------PFSDAETAIIRDLVSHAALVV 154 (162)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHH
Confidence 278888888889998888875
No 93
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=88.57 E-value=0.26 Score=49.32 Aligned_cols=45 Identities=22% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcC--------------CCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 494 QALSNLIEGALMRTQ--------------VGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 494 qVL~NLL~NAlk~t~--------------~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.+|..||+||..+.. .+..+.|.+.. +.+.-.|.|.|||.||+.+
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~-d~~~~~I~I~DnG~GMt~e 121 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP-NKQDRTLTIVDTGIGMTKA 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE-ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE-cCCceEEEEecCCCCcCHH
Confidence 445666666665421 12234444422 2345679999999999976
No 94
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=87.67 E-value=0.32 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.8
Q ss_pred eEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 512 KVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.|.|.. +.+.-.|.|.|||+||+.+
T Consensus 83 ~I~I~~---d~~~~tLtI~DNGiGMt~e 107 (281)
T 3peh_A 83 EIRISA---NKEKNILSITDTGIGMTKV 107 (281)
T ss_dssp CEEEEE---ETTTTEEEEEECSCCCCHH
T ss_pred EEEEEE---cCCCcEEEEEeCCCCCCHH
Confidence 455544 2234579999999999976
No 95
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=85.95 E-value=0.46 Score=47.05 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=17.9
Q ss_pred eEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 512 KVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.|.|.. +.+...|.|.|||+||+.+
T Consensus 76 ~I~I~~---d~~~~~L~I~DnGiGMt~e 100 (239)
T 3nmq_A 76 KIDIIP---NPQERTLTLVDTGIGMTKA 100 (239)
T ss_dssp CEEEEE---ETTTTEEEEEECSCCCCHH
T ss_pred EEEEEE---eCCccEEEEEeCCCCCCHH
Confidence 455544 2245679999999999976
No 96
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=85.42 E-value=0.56 Score=52.81 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhc----------------CCCCeEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 494 QALSNLIEGALMRT----------------QVGGKVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 494 qVL~NLL~NAlk~t----------------~~gg~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.+|..||+||+.+. .....|.|.+ .. +.-.|+|.|||+||+.+
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~--d~-~~~~I~I~DnGiGMt~e 88 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DK-DKRTLTISDNGVGMTRD 88 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE--ET-TTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE--eC-CCcEEEEEECCCCCCHH
Confidence 56788888888875 1123566665 23 33579999999999976
No 97
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=77.91 E-value=0.45 Score=55.93 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred cccCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 110 LVLPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 110 l~~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
.+..+.|+.++++..++.+.+.++.+ ++++|+..
T Consensus 161 ~L~~~ldl~~ll~~il~~l~~~l~ad-~~~I~L~d 194 (878)
T 3bjc_A 161 DISSHLDVTALCHKIFLHIHGLISAD-RYSLFLVC 194 (878)
T ss_dssp -----------------------------------
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhCCC-eEEEEEEe
Confidence 45567789999999999999999555 55588876
No 98
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=77.14 E-value=11 Score=38.19 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhhhhcCCceEEEEEecCCCCccCcceeEEEeecCCCCC---CCeeeeccccc-------CCcchhhhh
Q 007012 117 FQRLCVEQLHLFRRIVDPDAVLSVYVRPAGSYVMDRLELRRVVSYPGVNA---TDIVVLVGNFN-------MPAGLRAAE 186 (621)
Q Consensus 117 f~~l~~~ql~~~~~~~~~~a~~~~Yl~~~~~~~~~~~~l~~v~~yp~~~~---~~~~~l~~~~~-------~~~~~~~~~ 186 (621)
...+++..|+++++..... ..++|.-+.+ ....+.|+|.-..... ++. ||+.+. +.....+..
T Consensus 24 l~~~a~~lL~llaq~~~l~-~Aaly~~~~~----~~~~~~p~A~iG~~~~l~~~Dp--LVr~alet~~l~~v~~~~~~~~ 96 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLR-IAGLYRVRYD----RTPEPQPLATLGEMPALDADDL--LVRTCLERGELVSVRQELLERG 96 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCS-EEEEEEBCTT----SCBCSSCSEEESSCCCCCSCCH--HHHHHHHHTSCEECCC------
T ss_pred ChHHHHHHHHHHHHhcCee-EEEEEEEECC----cccCCceeeecCCCCCCCCCCH--HHHHHHHhCCceeechhhhhcc
Confidence 4556888888888888666 6669987622 1145666766655322 221 333331 111101000
Q ss_pred hhhccccccCCCCCCeEEEeee-eCCeEEEEEEEe
Q 007012 187 AALSSQQVQVVPEQRAVVFPMV-KHPFVVGFLVAE 220 (621)
Q Consensus 187 ~~~~~~~~~~~~~~~~lv~PL~-~~~~vvGvLv~~ 220 (621)
. ..-..+..+|+||+ .++.++|+|+++
T Consensus 97 ~-------~~~~sryL~viPLld~~g~i~Gvl~V~ 124 (298)
T 4eu0_A 97 E-------QRAHSAAAVCVPLVDTDGRILALLAVE 124 (298)
T ss_dssp --------------CCEEEEEECTTSCEEEEEEEE
T ss_pred c-------cccccceEEEEEeecCCCcEEEEEEEe
Confidence 0 01134678999999 999999999999
No 99
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=73.72 E-value=0.67 Score=54.42 Aligned_cols=32 Identities=0% Similarity=0.027 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHHHhhhhhcCCceEEEEEec
Q 007012 112 LPSPDFQRLCVEQLHLFRRIVDPDAVLSVYVRP 144 (621)
Q Consensus 112 ~~s~~f~~l~~~ql~~~~~~~~~~a~~~~Yl~~ 144 (621)
..+.++.++.+..++.+.+.++.+ .++||+..
T Consensus 345 ~~s~dl~~ll~~I~~~a~~ll~a~-~~~V~L~d 376 (878)
T 3bjc_A 345 EEQQSLEVILKKIAATIISFMQVQ-KCTIFIVD 376 (878)
T ss_dssp ---------------------------------
T ss_pred hccccHHHHHHHHHHHHHHHhCcc-eeEEEEEc
Confidence 445688899999999999999555 45599886
No 100
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=30.30 E-value=15 Score=36.70 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=18.3
Q ss_pred eEEEEEEEecCCeEEEEEEeCCCCCCCC
Q 007012 512 KVEIVSAAAPAGDALVVIDDDGPDMHYM 539 (621)
Q Consensus 512 ~I~I~~~~~~~~~v~I~V~D~G~GI~~e 539 (621)
.|.|.. +.+.-.|.|.|||+||+.+
T Consensus 120 ~I~I~~---Dk~~~tLtI~DNGiGMTke 144 (272)
T 3ied_A 120 IIKIKP---DKEKKTLTITDNGIGMDKS 144 (272)
T ss_dssp CEEEEE---ETTTTEEEEEECSCCCCHH
T ss_pred EEEEEE---eCCCCEEEEEeCCCCCCHH
Confidence 466655 2234579999999999987
No 101
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=23.17 E-value=61 Score=27.97 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=19.6
Q ss_pred CCCeEEEeeeeCCeEEEEEEEe
Q 007012 199 EQRAVVFPMVKHPFVVGFLVAE 220 (621)
Q Consensus 199 ~~~~lv~PL~~~~~vvGvLv~~ 220 (621)
....+++||+.+|.++|+|.+.
T Consensus 75 ~~s~ii~PI~~~g~viG~i~l~ 96 (123)
T 2w1r_A 75 MNSYTVGPIVANGDPIGAVVIF 96 (123)
T ss_dssp ESEEEEEEEEETTEEEEEEEEE
T ss_pred eeEEEEEEEEECCEEEEEEEEE
Confidence 3568999999999999999877
Done!