Your job contains 1 sequence.
>007013
MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS
CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK
DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLN
IAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAE
QFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST
RLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK
FSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRD
SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD
TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKR
FLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP
ASNPEANCGYFKWAFSKSKQK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007013
(621 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2135164 - symbol:AT4G36050 species:3702 "Arabi... 1466 3.3e-150 1
ZFIN|ZDB-GENE-040426-835 - symbol:apex2 "APEX nuclease (a... 391 1.4e-64 3
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 343 7.7e-51 4
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 332 1.2e-48 3
RGD|1565983 - symbol:Apex2 "APEX nuclease (apurinic/apyri... 309 1.7e-48 4
UNIPROTKB|F1MSK4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 331 3.0e-47 4
UNIPROTKB|Q5E9N9 - symbol:APEX2 "DNA-(apurinic or apyrimi... 331 3.0e-47 4
UNIPROTKB|Q9UBZ4 - symbol:APEX2 "DNA-(apurinic or apyrimi... 325 8.9e-47 3
RGD|1586200 - symbol:Apex2l1 "APEX nuclease (apurinic/apy... 319 1.5e-44 3
UNIPROTKB|E2RCW8 - symbol:APEX2 "Uncharacterized protein"... 302 4.0e-44 4
UNIPROTKB|J9NYZ7 - symbol:APEX2 "Uncharacterized protein"... 301 5.3e-44 4
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 223 3.1e-32 4
POMBASE|SPBC3D6.10 - symbol:apn2 "AP-endonuclease Apn2" s... 256 2.0e-29 3
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 206 2.3e-29 4
SGD|S000000115 - symbol:APN2 "Class II abasic (AP) endonu... 197 6.2e-20 3
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 137 1.6e-13 3
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 125 2.9e-13 3
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 134 4.1e-13 2
GENEDB_PFALCIPARUM|PF14_0285 - symbol:PF14_0285 "exodeoxy... 120 5.7e-12 3
UNIPROTKB|Q8ILF8 - symbol:PF14_0285 "Exodeoxyribonuclease... 120 5.7e-12 3
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 130 2.5e-11 2
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 131 9.0e-11 3
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 120 1.2e-10 2
TIGR_CMR|NSE_0415 - symbol:NSE_0415 "exodeoxyribonuclease... 137 1.6e-10 2
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 117 1.1e-09 3
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 120 2.7e-09 2
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 120 3.4e-09 2
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 119 7.1e-09 2
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 117 7.4e-09 2
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 117 7.4e-09 2
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 116 9.5e-09 2
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 116 9.6e-09 2
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 116 9.6e-09 2
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 116 9.6e-09 2
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 116 1.2e-08 2
UNIPROTKB|K7GNL1 - symbol:LOC100519003 "Uncharacterized p... 137 2.9e-08 1
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 117 3.1e-08 2
TIGR_CMR|SO_3037 - symbol:SO_3037 "exodeoxyribonuclease I... 107 1.7e-07 2
TIGR_CMR|APH_0505 - symbol:APH_0505 "exodeoxyribonuclease... 145 3.1e-07 1
TIGR_CMR|ECH_0675 - symbol:ECH_0675 "exodeoxyribonuclease... 144 4.4e-07 1
CGD|CAL0001657 - symbol:APN2 species:5476 "Candida albica... 117 5.0e-07 3
TIGR_CMR|GSU_1539 - symbol:GSU_1539 "exodeoxyribonuclease... 99 3.0e-05 2
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 90 5.4e-05 2
UNIPROTKB|E1C286 - symbol:E1C286 "Uncharacterized protein... 110 0.00011 3
TIGR_CMR|SPO_2509 - symbol:SPO_2509 "exodeoxyribonuclease... 86 0.00020 2
UNIPROTKB|P09030 - symbol:xthA "exonuclease III" species:... 93 0.00022 2
UNIPROTKB|F1N383 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00025 1
UNIPROTKB|Q3MHN7 - symbol:NEIL3 "Endonuclease 8-like 3" s... 125 0.00025 1
RGD|1310562 - symbol:Neil3 "nei endonuclease VIII-like 3 ... 127 0.00030 2
ZFIN|ZDB-GENE-041114-18 - symbol:neil3 "nei endonuclease ... 123 0.00038 1
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 90 0.00050 2
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 113 0.00091 2
>TAIR|locus:2135164 [details] [associations]
symbol:AT4G36050 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR004808 InterPro:IPR010666
Pfam:PF06839 PROSITE:PS51435 Pfam:PF03372 EMBL:CP002687
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 KO:K10772
OMA:FIDSYRC IPI:IPI00517014 RefSeq:NP_974691.2 UniGene:At.22147
UniGene:At.74442 ProteinModelPortal:F4JNY0 SMR:F4JNY0 PRIDE:F4JNY0
EnsemblPlants:AT4G36050.2 GeneID:829761 KEGG:ath:AT4G36050
Uniprot:F4JNY0
Length = 610
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 304/521 (58%), Positives = 372/521 (71%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSK-----IME 113
CTRTS+KGRTGYSGVATFCRVKS SS E ALPV AEEG TGL+ ++ G K + E
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL----- 168
GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180
Query: 169 ----QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
ER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YK
Sbjct: 241 ERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 300
Query: 285 RWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 343
R+K N P RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 301 RFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 360
Query: 344 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 403
VSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 361 VSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFE 417
Query: 404 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 463
N+ + G T+ E + ++ + S + SS D RKKA+K Q QLSLKSF
Sbjct: 418 NKSTSG-VTEA-ETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSF 475
Query: 464 FHKRSNVSH--DDNNSITDTSLNVN-NSVTDTSLSQEEVPE 501
F S V++ D ++S +S + S+T+ ++S +E E
Sbjct: 476 FTTNSKVNNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSE 516
Score = 264 (98.0 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 74/213 (34%), Positives = 107/213 (50%)
Query: 398 VYCSSSNQESE----GEF-TKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 452
V CSSS Q + G+ T + NC S ++ + S + S V A A
Sbjct: 378 VSCSSSTQSNTSSICGDISTGPLRNC-GSMGISLEKSC---SFENKSTSGVTEAETVAAT 433
Query: 453 SQLGQLS--LKSFFHKRSNVSHDDNNS----ITDTSLNVNNSVTDTSLSQEEVPESHHHS 506
+ LS +++ + N+S D + I + L++ + T S S +
Sbjct: 434 GSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYV 493
Query: 507 NKIPVTDY-SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 565
+ P + S + + G S + E+ K++N+ AL+EW+RIQ LM+ SI
Sbjct: 494 SSSPSSQVESITEPNVSGKEDSEPTTSTQEQDQTGSSAKQKNDAALMEWQRIQNLMQNSI 553
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 598
PLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 554 PLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 586
>ZFIN|ZDB-GENE-040426-835 [details] [associations]
symbol:apex2 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
ZFIN:ZDB-GENE-040426-835 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:27301 HOVERGEN:HBG054715 KO:K10772 HSSP:P27695 EMBL:BC044527
IPI:IPI00484464 RefSeq:NP_956440.1 UniGene:Dr.116061
ProteinModelPortal:Q803D4 STRING:Q803D4 GeneID:393115
KEGG:dre:393115 InParanoid:Q803D4 NextBio:20814188
ArrayExpress:Q803D4 Uniprot:Q803D4
Length = 558
Score = 391 (142.7 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 99/233 (42%), Positives = 133/233 (57%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + ++K+LDSFDADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIRTFKN---GIKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-MEGLE-DF 118
+R GR+GYSGVAT+C+ + A P AEEG TGLL G+ I G + +
Sbjct: 58 FSR----GRSGYSGVATYCK--------DAATPFLAEEGLTGLLSNQGAVIGCYGDQVEL 105
Query: 119 SKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +ELL +D+EGR VIT H HFI + NVY PRAD + R +FKLQF+ +LQ
Sbjct: 106 TSEELLALDNEGRAVITQH-HFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 170 ---------GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES 211
G + ++GD+N + ID CD +F N R W L E+
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCDPDDVDNFEDNPGRKWLDQFLFET 217
Score = 195 (73.7 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 34/54 (62%), Positives = 38/54 (70%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 619
PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W K K
Sbjct: 506 PLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAWV-EKGK 558
Score = 155 (59.6 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 78/303 (25%), Positives = 118/303 (38%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE----------------- 210
G + ++GD+N + ID CD +F N R W L E
Sbjct: 174 GSHVIILGDVNTSHRPIDHCDPDDVDNFEDNPGRKWLDQFLFETAENSENGNAADEPAED 233
Query: 211 -----SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 265
SGG F D FR HP+R A+TCW + TGA Q NYGTRID+I
Sbjct: 234 FQESASGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYIF------------S 281
Query: 266 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE------ 319
+H+ V DI+ + + + P W +S L+ S P +C +PE
Sbjct: 282 NHSLVKTFFIGVDIMPEVEG--SDHCPVW-AQLSCTLQSSPRCPP-VCTRHMPEFIGRQQ 337
Query: 320 --------IPQHSTPSLAS-RYLPIIRG---VQQTLVSVLMKREVAKQGKSCKFSGSLPA 367
IP+ S +S + LP + +++ L V+ K+ V K+ P
Sbjct: 338 KLSRFLFKIPEKQNISNSSEKSLPGSQDAGEIRENLNPVVQKQNVGKKR---------PT 388
Query: 368 ESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH 427
+ T + ++ +N G L + Q + K IE+C+D S+
Sbjct: 389 DREDTNAHKSKKSKTTKTESNA--KGSLLAFFKPKQTQLIPTK-EKQIESCQDGPGTGSN 445
Query: 428 STI 430
S I
Sbjct: 446 SKI 448
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 343 (125.8 bits), Expect = 7.7e-51, Sum P(4) = 7.7e-51
Identities = 88/243 (36%), Positives = 131/243 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R+ R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNSYFSFSRS----RSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H G L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLV 209
K++F+ +LQ G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 210 ESG 212
G
Sbjct: 230 NPG 232
Score = 191 (72.3 bits), Expect = 7.7e-51, Sum P(4) = 7.7e-51
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 535 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 594
E+K K K+ W+ + + +PLC GH+EPCV R VKK GP FGR+F++C
Sbjct: 435 EEKNKVPESKDEKGERTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMC 493
Query: 595 ARAEGPASNPEANCGYFKWA 614
AR GP S+P + C +F W+
Sbjct: 494 ARPRGPPSDPSSRCNFFLWS 513
Score = 164 (62.8 bits), Expect = 3.2e-28, Sum P(4) = 3.2e-28
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESG-------GSFFDVFR 220
G + ++GDLN A ID CDA F ++ R W +L G G F D +R
Sbjct: 188 GSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDEAGPHIGLFMDSYR 247
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 248 YLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL 279
Score = 75 (31.5 bits), Expect = 7.7e-51, Sum P(4) = 7.7e-51
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 45 (20.9 bits), Expect = 7.7e-51, Sum P(4) = 7.7e-51
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 442 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 501
H R RK + Q +L S+F S++S + + +L + +T T + EEV
Sbjct: 374 HSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQ--TSGVELPTLPLVGPLT-TPKTAEEVAT 430
Query: 502 SH--HHSNKIP 510
+ NK+P
Sbjct: 431 ATVLEEKNKVP 441
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 332 (121.9 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 88/240 (36%), Positives = 132/240 (55%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGS 109
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T +G
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATLNGD 109
Query: 110 KIMEG-LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
G +++F+++EL +DSEGR ++T H G + NVY P AD R+
Sbjct: 110 VNCYGNMDEFTQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+H+LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Score = 195 (73.7 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 604 PEANCGYFKWA 614
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
Score = 148 (57.2 bits), Expect = 7.7e-27, Sum P(3) = 7.7e-27
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VESG---GSFFDVFR 220
G + ++GDLN A ID DA F ++ R W +L ++G G F D +R
Sbjct: 189 GSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLRCQAGSHMGPFIDSYR 248
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
P+++ A+TCW + TGA NYG+RID++L
Sbjct: 249 YFQPKQKGAFTCWSTVTGARHLNYGSRIDYVL 280
Score = 80 (33.2 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
GSDH PV L P +P P L +R+LP G Q ++ L++ E
Sbjct: 301 GSDHCPVGAVLNVSP-VPAKQCPPLCTRFLPEFAGTQLKILRFLVRLE 347
>RGD|1565983 [details] [associations]
symbol:Apex2 "APEX nuclease (apurinic/apyrimidinic endonuclease)
2" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743
"mitochondrial inner membrane" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
RGD:1565983 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 OrthoDB:EOG4NS3BQ IPI:IPI00949933
Ensembl:ENSRNOT00000066573 ArrayExpress:D4A344 Uniprot:D4A344
Length = 521
Score = 309 (113.8 bits), Expect = 1.7e-48, Sum P(4) = 1.7e-48
Identities = 83/227 (36%), Positives = 121/227 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLAGQEPSNSPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
+GY S+FS +R+ R+GYS GVATFC+ + A PVAAEEG +G+
Sbjct: 62 VEGYNSYFSFSRS----RSGYSECPCLSPGVATFCK--------DSATPVAAEEGLSGVF 109
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSE 153
T I ++F+++EL +DSEGR +T H G L NVY P AD
Sbjct: 110 ATLNGDIGCYGNTDEFTQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPG 169
Query: 154 DTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
R+ FK++F+ +LQ G + ++GDLN A ID CDA
Sbjct: 170 KPERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDA 216
Score = 190 (71.9 bits), Expect = 1.7e-48, Sum P(4) = 1.7e-48
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
K+ V W+ + + +PLC GH+EPCV R VKK GP FGR F++CAR GP S+
Sbjct: 449 KDEKEVRTAFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSD 507
Query: 604 PEANCGYFKWA 614
P + C +F W+
Sbjct: 508 PSSRCNFFLWS 518
Score = 91 (37.1 bits), Expect = 1.7e-48, Sum P(4) = 1.7e-48
Identities = 27/91 (29%), Positives = 39/91 (42%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESGG-----SFFDVFRSK 222
G + ++GDLN A ID CDA F N R W + GG S F V+
Sbjct: 195 GSHVIILGDLNTAHRPIDHCDASSLECFQSNPLREWLDYSRMNPGGEQAPVSLFCVYYIY 254
Query: 223 -HPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
HP ++ + W + + Y ID++L
Sbjct: 255 LHPHQQWVWEEWTPLSSSYHVCYIVSIDYVL 285
Score = 57 (25.1 bits), Expect = 1.7e-48, Sum P(4) = 1.7e-48
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 442 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 501
H R RK + Q SL S+F SN+S + + +L + + +T T ++E
Sbjct: 379 HSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAMA 436
Query: 502 SH-HHSNKIP 510
+ NK+P
Sbjct: 437 TVVKEKNKVP 446
>UNIPROTKB|F1MSK4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005743 "mitochondrial inner
membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005743 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 IPI:IPI00696158 UniGene:Bt.1184
OMA:FIDSYRC EMBL:DAAA02073320 EMBL:DAAA02073321
Ensembl:ENSBTAT00000017537 ArrayExpress:F1MSK4 Uniprot:F1MSK4
Length = 514
Score = 331 (121.6 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 97/275 (35%), Positives = 141/275 (51%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGS-----LRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R R + S + ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 VESG---GSFFDVFRSKHPERREAYTCW-PSNTGA 239
G GS F ++Y C+ P GA
Sbjct: 230 SNLGCESGSHMGPFI-------DSYRCFQPKQKGA 257
Score = 188 (71.2 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 149 (57.5 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VESG---GSFFDVFR 220
G + ++GDLN A ID DA F ++ R W +L ESG G F D +R
Sbjct: 189 GSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCESGSHMGPFIDSYR 248
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 249 CFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 68 (29.0 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 363
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 364 SLPAESNST 372
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 445 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 475
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|Q5E9N9 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:BT020881 EMBL:BT021707 IPI:IPI00696158
RefSeq:NP_001015577.1 UniGene:Bt.1184 ProteinModelPortal:Q5E9N9
STRING:Q5E9N9 PRIDE:Q5E9N9 GeneID:511790 KEGG:bta:511790 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 InParanoid:Q5E9N9 KO:K10772
OrthoDB:EOG4NS3BQ NextBio:20870098 Uniprot:Q5E9N9
Length = 514
Score = 331 (121.6 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 97/275 (35%), Positives = 141/275 (51%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGS-----LRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R R + S + ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 VESG---GSFFDVFRSKHPERREAYTCW-PSNTGA 239
G GS F ++Y C+ P GA
Sbjct: 230 SNLGCESGSHMGPFI-------DSYRCFQPKQKGA 257
Score = 188 (71.2 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
Score = 149 (57.5 bits), Expect = 6.4e-25, Sum P(4) = 6.4e-25
Identities = 34/92 (36%), Positives = 51/92 (55%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML----VESG---GSFFDVFR 220
G + ++GDLN A ID DA F ++ R W +L ESG G F D +R
Sbjct: 189 GSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCESGSHMGPFIDSYR 248
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 249 CFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL 280
Score = 68 (29.0 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 24/69 (34%), Positives = 30/69 (43%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 363
GSDH PV L V +P P L + +LP G Q ++ L+ KQ K S
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTCFLPEFAGTQLKILRFLVH---FKQDPVFKQSA 356
Query: 364 SLPAESNST 372
P SN T
Sbjct: 357 LQP--SNQT 363
Score = 38 (18.4 bits), Expect = 3.0e-47, Sum P(4) = 3.0e-47
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 445 RARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 475
R+R S GQ +L S+F S+ N
Sbjct: 378 RSRPSKTGSSRGQKNLMSYFQPSSSGPQTSN 408
>UNIPROTKB|Q9UBZ4 [details] [associations]
symbol:APEX2 "DNA-(apurinic or apyrimidinic site) lyase 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR010666 InterPro:IPR020847
Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0005743
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0007049 GO:GO:0006310 GO:GO:0004527 GO:GO:0090305
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
HOGENOM:HOG000231386 HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ
EMBL:AB049211 EMBL:AJ011311 EMBL:AB021260 EMBL:AF119046
EMBL:AY884244 EMBL:AL020991 EMBL:BC002959 IPI:IPI00083281
RefSeq:NP_055296.2 UniGene:Hs.659558 ProteinModelPortal:Q9UBZ4
SMR:Q9UBZ4 IntAct:Q9UBZ4 MINT:MINT-1439290 STRING:Q9UBZ4
PhosphoSite:Q9UBZ4 DMDM:73921676 PeptideAtlas:Q9UBZ4 PRIDE:Q9UBZ4
DNASU:27301 Ensembl:ENST00000374987 GeneID:27301 KEGG:hsa:27301
UCSC:uc004dtz.3 GeneCards:GC0XP055043 HGNC:HGNC:17889 HPA:HPA030872
MIM:300773 neXtProt:NX_Q9UBZ4 PharmGKB:PA38474 InParanoid:Q9UBZ4
OMA:FIDSYRC PhylomeDB:Q9UBZ4 GenomeRNAi:27301 NextBio:50285
ArrayExpress:Q9UBZ4 Bgee:Q9UBZ4 CleanEx:HS_APEX2
Genevestigator:Q9UBZ4 GermOnline:ENSG00000169188 Uniprot:Q9UBZ4
Length = 518
Score = 325 (119.5 bits), Expect = 8.9e-47, Sum P(3) = 8.9e-47
Identities = 88/244 (36%), Positives = 130/244 (53%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R Q S ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG 212
G
Sbjct: 230 SNLG 233
Score = 190 (71.9 bits), Expect = 8.9e-47, Sum P(3) = 8.9e-47
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
Score = 150 (57.9 bits), Expect = 3.8e-26, Sum P(3) = 3.8e-26
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-------GSFFDVFR 220
G + ++GDLN A ID DA F ++ R W S+L G G F D +R
Sbjct: 189 GSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYR 248
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
P++ A+TCW + TGA NYG+R+D++L
Sbjct: 249 CFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL 280
Score = 77 (32.2 bits), Expect = 8.9e-47, Sum P(3) = 8.9e-47
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
GSDH PV L V +P P L +R+LP G Q ++ L+ E
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
>RGD|1586200 [details] [associations]
symbol:Apex2l1 "APEX nuclease (apurinic/apyrimidinic
endonuclease) 2-like 1" species:10116 "Rattus norvegicus"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 RGD:1586200 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:27301
KO:K10772 OrthoDB:EOG4NS3BQ OMA:FIDSYRC IPI:IPI00364584
RefSeq:XP_001059968.1 RefSeq:XP_223499.3 PRIDE:D3ZHV4
Ensembl:ENSRNOT00000038157 GeneID:289662 KEGG:rno:289662
NextBio:630125 Uniprot:D3ZHV4
Length = 516
Score = 319 (117.4 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 85/239 (35%), Positives = 130/239 (54%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + G +LR +L DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSK 110
+GY S+FS +R+ R+GYSGVATFC+ + PVAAEEG +G T SG
Sbjct: 62 VEGYNSYFSFSRS----RSGYSGVATFCK--------DSVTPVAAEEGLSGQFATLSGHV 109
Query: 111 IMEG-LEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQF 160
G + +F++++L +DSEGR ++T H G L NVY P A + R+ F
Sbjct: 110 GCYGNMNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
K++F+ +LQ G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLL 228
Score = 178 (67.7 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 464 MPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
Score = 155 (59.6 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML--VE--SG---GSFFDVFR 220
G + ++GD+N A ID C+AG F ++ R W +L +E +G G F D +R
Sbjct: 188 GSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLSNLEYPAGSHIGPFMDSYR 247
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
+P++ A+TCW +GA NYGTR+D+IL
Sbjct: 248 YFYPKQERAFTCWSMISGARSLNYGTRLDYIL 279
Score = 75 (31.5 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
GSDH PV L V +P P+L +R+LP G Q ++ L+ E
Sbjct: 300 GSDHCPVGAVLN-VSCVPAKQCPALCTRFLPEFAGTQLKILGFLVPCE 346
>UNIPROTKB|E2RCW8 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 EMBL:AAEX03026400
EMBL:AAEX03026401 Ensembl:ENSCAFT00000022737 Uniprot:E2RCW8
Length = 515
Score = 302 (111.4 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 82/244 (33%), Positives = 128/244 (52%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + S ++ ++LD DADI+C QETK+ + L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTSERXXXXLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+ +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYSFFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 209 VESG 212
G
Sbjct: 230 SNLG 233
Score = 186 (70.5 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 141 (54.7 bits), Expect = 4.3e-25, Sum P(4) = 4.3e-25
Identities = 33/92 (35%), Positives = 49/92 (53%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG---GS----FFDVFR 220
G + ++GDLN A ID DA F ++ R W +L G GS F D +R
Sbjct: 189 GSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYR 248
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
P++ A+TCW + +GA NYG+R+D++L
Sbjct: 249 CFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 75 (31.5 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 348
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 445 RARKKAKKSQLGQLSLKSFFHKRSN 469
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>UNIPROTKB|J9NYZ7 [details] [associations]
symbol:APEX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 OMA:FIDSYRC
EMBL:AAEX03026400 EMBL:AAEX03026401 Ensembl:ENSCAFT00000049032
Uniprot:J9NYZ7
Length = 515
Score = 301 (111.0 bits), Expect = 5.3e-44, Sum P(4) = 5.3e-44
Identities = 83/244 (34%), Positives = 128/244 (52%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLR--KLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + S ++ ++LD DADI+C QETK+ L L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTTHVLCQXLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+ +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYSFFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H G L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 209 VESG 212
G
Sbjct: 230 SNLG 233
Score = 186 (70.5 bits), Expect = 5.3e-44, Sum P(4) = 5.3e-44
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
Score = 141 (54.7 bits), Expect = 4.3e-25, Sum P(4) = 4.3e-25
Identities = 33/92 (35%), Positives = 49/92 (53%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG---GS----FFDVFR 220
G + ++GDLN A ID DA F ++ R W +L G GS F D +R
Sbjct: 189 GSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQAGSHVRPFIDSYR 248
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
P++ A+TCW + +GA NYG+R+D++L
Sbjct: 249 CFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL 280
Score = 75 (31.5 bits), Expect = 5.3e-44, Sum P(4) = 5.3e-44
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 348
GSDH PV L V +P P L +R+LP G Q ++ L+
Sbjct: 301 GSDHCPVGAVLS-VSSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 344
Score = 43 (20.2 bits), Expect = 5.3e-44, Sum P(4) = 5.3e-44
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 445 RARKKAKKSQLGQLSLKSFFHKRSN 469
R R S GQ SL S+F SN
Sbjct: 378 RLRPNQTGSSRGQKSLTSYFQPSSN 402
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 223 (83.6 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 68/201 (33%), Positives = 102/201 (50%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 24 TFESMFDILEADIVVVQETKIQRKDLRDDMVLVPGWDCYFSLPKV----KKGYSGVAIYT 79
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKI----------MEG---LEDFSKDEL--L 124
R ++T P+ AEEG TG L S + + G +E SK +L
Sbjct: 80 R-----NAT--CAPIRAEEGLTGTLCPPNSLVSFRDLPEDQQIGGYPTIEQLSKLKLDAE 132
Query: 125 KIDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFH------VLQGRRIFVV 176
+DSEGRCVI + F+L +Y P R +S D R F L V G+R+FV
Sbjct: 133 TLDSEGRCVILEFPAFVLIGLYCPANRDESRDAFRQNF-LDLMDARVRNLVALGKRVFVT 191
Query: 177 GDLNIAPAAIDRCDAGPDFAK 197
GD+NI+ ID A + K
Sbjct: 192 GDINISRGEIDAAHAAENIKK 212
Score = 127 (49.8 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 24/53 (45%), Positives = 29/53 (54%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
P C H E C++ KKPGP FGR F++C R GP+ N E C F WA
Sbjct: 552 PKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPSGNKEKGTEWRCSTFIWA 604
Score = 123 (48.4 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 252 FDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS 290
Score = 44 (20.5 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 394 ILQGVYCSSSNQESEGEFTKTIENCRDS 421
+L G+YC ++ ES F + + D+
Sbjct: 149 VLIGLYCPANRDESRDAFRQNFLDLMDA 176
Score = 42 (19.8 bits), Expect = 3.1e-32, Sum P(4) = 3.1e-32
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 455 LGQLSLKSFFHKRSNVSHDDN 475
+GQ +LK FF + + DN
Sbjct: 461 IGQSTLKGFFKPKCTLEPKDN 481
>POMBASE|SPBC3D6.10 [details] [associations]
symbol:apn2 "AP-endonuclease Apn2" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004528 "phosphodiesterase I activity" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006284 "base-excision
repair" evidence=IC] [GO:0008311 "double-stranded DNA specific
3'-5' exodeoxyribonuclease activity" evidence=IMP] [GO:0034614
"cellular response to reactive oxygen species" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 PomBase:SPBC3D6.10
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0034614 GO:GO:0004519
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 GO:GO:0004528 KO:K10772
OMA:FIDSYRC GO:GO:0008311 EMBL:AY483158 PIR:T40370
RefSeq:NP_595522.1 ProteinModelPortal:P87175 STRING:P87175
EnsemblFungi:SPBC3D6.10.1 GeneID:2540679 KEGG:spo:SPBC3D6.10
OrthoDB:EOG4GQTDH NextBio:20801803 Uniprot:P87175
Length = 523
Score = 256 (95.2 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 81/285 (28%), Positives = 131/285 (45%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTG---YSGVA 76
S +++ AD+IC QE K+++ + +G++S+F+ + KG +G Y
Sbjct: 25 SYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIR-KGYSGVGFYVKKD 83
Query: 77 TFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD 136
VK+ T + LPV ++ ++ KI +D + IDSEGRC++ D
Sbjct: 84 VAIPVKAEEGITGI-LPVRGQK-YSYSEAPEHEKIGFFPKDIDRKTANWIDSEGRCILLD 141
Query: 137 HGHFILFNVYGPRADSEDTV---RIQFKL---QFFHVLQ--GRRIFVVGDLNIAPAAIDR 188
FIL VY P E+ + R +K + +++ R+I +VGD+NI ID
Sbjct: 142 FQMFILIGVYCPVNSGENRLEYRRAFYKALRERIERLIKEGNRKIILVGDVNILCNPIDT 201
Query: 189 CDAGPDFAKN------EFRIWFRSMLVESG-GSFFDVFRSKHPERREAYTCWPSNTGAEQ 241
D ++ E R W R +L+ S G D+ R +HP R+ +TCW +
Sbjct: 202 ADQKDIIRESLIPSIMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRP 261
Query: 242 FNYGTRIDHILCAGPCLH--QKHDLQSHNFVTCHVNECDILIDYK 284
NYGTRID+ L L Q D+ + + H C + +D K
Sbjct: 262 TNYGTRIDYTLATPDLLPWVQDADIMAEVMGSDH---CPVYLDLK 303
Score = 253 (94.1 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 74/216 (34%), Positives = 110/216 (50%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++NVNG++ + F S +++ AD+IC QE K+++ + +G+
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM--- 112
+S+F T K R GYSGV + VK +VA+PV AEEG TG+L G K
Sbjct: 61 DSYF----TFPKIRKGYSGVGFY--VKK-----DVAIPVKAEEGITGILPVRGQKYSYSE 109
Query: 113 ----EGLEDFSKDELLK----IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
E + F KD K IDSEGRC++ D FIL VY P E+ R++++ F
Sbjct: 110 APEHEKIGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAF 167
Query: 165 FHVLQ----------GRRIFVVGDLNIAPAAIDRCD 190
+ L+ R+I +VGD+NI ID D
Sbjct: 168 YKALRERIERLIKEGNRKIILVGDVNILCNPIDTAD 203
Score = 133 (51.9 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 524 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 583
V+ V ++ + G K N A W++I E + PLC+GHKEPC V+KP
Sbjct: 419 VSIEVLDNNNESDIGLTVKKKVENGNA---WKQI--FSERAPPLCEGHKEPCKYLTVRKP 473
Query: 584 GPTFGRRFFVCARAEG 599
G +GR+F++CAR G
Sbjct: 474 GINYGRKFWICARPVG 489
Score = 57 (25.1 bits), Expect = 1.4e-21, Sum P(3) = 1.4e-21
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 416 ENCRDSANVASHSTITQGSSN-HISPFHVDRARKKAKKSQLG----QLSLKSFFHKRSNV 470
EN SA+ S T+++ +S + + ++ R+K + L Q K +K +V
Sbjct: 360 ENVSASASSGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQKEEKEETNKTEDV 419
Query: 471 SHD--DNNSITDTSLNVNNSV 489
S + DNN+ +D L V V
Sbjct: 420 SIEVLDNNNESDIGLTVKKKV 440
Score = 55 (24.4 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 281 IDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCLGE 316
IDY P P W + + GSDH PVY+ L E
Sbjct: 268 IDYTLATPDLLP-WVQDADIMAEVMGSDHCPVYLDLKE 304
Score = 52 (23.4 bits), Expect = 4.5e-21, Sum P(3) = 4.5e-21
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 349 KREVAKQGKSCKFSGSLPAESNSTGDTEDCS-ENVDRSLNNYCDSGI 394
KR +Q K F E T TED S E +D NN D G+
Sbjct: 390 KRRRKEQSKLLSFFAKQKEEKEETNKTEDVSIEVLDN--NNESDIGL 434
Score = 39 (18.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 394 ILQGVYCSSSNQESEGEFTK 413
IL GVYC ++ E+ E+ +
Sbjct: 146 ILIGVYCPVNSGENRLEYRR 165
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 206 (77.6 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 67/203 (33%), Positives = 101/203 (49%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDILEADIVVIQEAKIQRKDLQDDMVLVPGWDVYFSLP----KFKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLED-----FSK-DELLKI------DSE 129
S++ + P+ AEEG TG+L S +K E D + + D+L I DSE
Sbjct: 54 ---SSKCS-PIRAEEGITGILCPPNSTTKFRELSPDQQIGGYPRPDQLSDIIDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH----------VLQGRRIFVVGDL 179
GRC+I + F+L VY P + D R F+ Q FH V G+++ + GDL
Sbjct: 110 GRCMILEFPAFVLIGVYSPA--TRDETRTDFR-QAFHKAMDARVRNLVAMGKQVVLTGDL 166
Query: 180 NIAPAAIDRCDAGPDFAKNEFRI 202
NI +D K E I
Sbjct: 167 NIIRNELDTAGILERLRKEEMTI 189
Score = 131 (51.2 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 54/206 (26%), Positives = 87/206 (42%)
Query: 419 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 478
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRAP--------GQKSLTGFFKPKNPISTPATDG- 474
Query: 479 TDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYS----CSVHELHGVNSSVCSHDQ 533
TS+ S T S S ++P + ++K S L+G S +
Sbjct: 475 ERTSIRTTPSPTKCSNASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGGRSFNSGKED 534
Query: 534 DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 592
D K + + E W ++ L + +P C+ H EPC++ KKPG GR F+
Sbjct: 535 DTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKPGINCGRSFY 591
Query: 593 VCARAEGPASNPEAN----CGYFKWA 614
+C R GP+ E CG F W+
Sbjct: 592 ICGRPLGPSGEKEKGTEWRCGTFIWS 617
Score = 106 (42.4 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+D+ R HP+R YTCW + A N+G+RID++LC+
Sbjct: 224 YDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCS 262
Score = 47 (21.6 bits), Expect = 2.3e-29, Sum P(4) = 2.3e-29
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 302 LEGSDHAPVYMCLGE 316
L GSDH PVY L +
Sbjct: 278 LLGSDHCPVYATLSD 292
Score = 39 (18.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 394 ILQGVYCSSSNQESEGEFTKTIENCRDS 421
+L GVY ++ E+ +F + D+
Sbjct: 121 VLIGVYSPATRDETRTDFRQAFHKAMDA 148
>SGD|S000000115 [details] [associations]
symbol:APN2 "Class II abasic (AP) endonuclease involved in
repair of DNA damage" species:4932 "Saccharomyces cerevisiae"
[GO:0016829 "lyase activity" evidence=IEA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008081
"phosphoric diester hydrolase activity" evidence=IDA] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IGI] InterPro:IPR004808
InterPro:IPR010666 InterPro:IPR020848 Pfam:PF06839 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 SGD:S000000115
Pfam:PF03372 GO:GO:0005634 GO:GO:0006284 GO:GO:0003677
GO:GO:0008270 EMBL:BK006936 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 GO:GO:0008081 KO:K10772 GO:GO:0008311
OrthoDB:EOG4GQTDH EMBL:Z35780 EMBL:AY693183 PIR:S45753
RefSeq:NP_009534.1 ProteinModelPortal:P38207 DIP:DIP-3930N
IntAct:P38207 MINT:MINT-515848 STRING:P38207 EnsemblFungi:YBL019W
GeneID:852262 KEGG:sce:YBL019W CYGD:YBL019w HOGENOM:HOG000246560
OMA:MYTVWNT NextBio:970856 Genevestigator:P38207 GermOnline:YBL019W
Uniprot:P38207
Length = 520
Score = 197 (74.4 bits), Expect = 6.2e-20, Sum P(3) = 6.2e-20
Identities = 67/197 (34%), Positives = 94/197 (47%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQGRRI 173
F+L+F VL RR+
Sbjct: 192 GEMFRLRFLKVLL-RRV 207
Score = 106 (42.4 bits), Expect = 6.2e-20, Sum P(3) = 6.2e-20
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
PLC+ H E + + K GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCR-HGEESMLKT-SKTSANPGRKFWICKRSRGDSNNTESSCGFFQW 519
Score = 99 (39.9 bits), Expect = 4.4e-09, Sum P(3) = 4.4e-09
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 117 DFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ------ 169
D + L++DSEGRCV+ + ++ +VY P + F+L+F VL
Sbjct: 151 DLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGEMFRLRFLKVLLRRVRNL 210
Query: 170 ---GRRIFVVGDLNIAPAAIDRCDAGPDFA 196
G++I ++GD+N+ ID D F+
Sbjct: 211 DKIGKKIVLMGDVNVCRDLIDSADTLEQFS 240
Score = 59 (25.8 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 31/114 (27%), Positives = 43/114 (37%)
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF--R 201
NV DS DT+ QF + + G ++ + AI PD +
Sbjct: 224 NVCRDLIDSADTLE-QFSIPITDPMGGTKL----EAQYRDKAIQFI-INPDTPHRRIFNQ 277
Query: 202 IWFRSMLVESG--GSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHIL 252
I S+L ++ G D R R + YT W NYG+RID IL
Sbjct: 278 ILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFIL 331
Score = 53 (23.7 bits), Expect = 6.2e-20, Sum P(3) = 6.2e-20
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 304 GSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKS 358
GSDH PVY L + P Q P +RY +R ++ + K++ K+
Sbjct: 351 GSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLRN--HNVLEMFAKKDTNKESNK 408
Query: 359 CKF 361
K+
Sbjct: 409 QKY 411
Score = 43 (20.2 bits), Expect = 6.6e-19, Sum P(3) = 6.6e-19
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 431 TQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDD 474
T SN + V + K S + SL SFF K N DD
Sbjct: 402 TNKESNK-QKYCVSKVMNTKKNSNIKNKSLDSFFQK-VNGEKDD 443
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 137 (53.3 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L+ L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQ-LAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 332
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFS 86
+ SF+SC+ + + GYSG A R+K P S
Sbjct: 333 DHSFWSCSVS----KLGYSGTAIISRIK-PLS 359
Score = 125 (49.1 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 43/150 (28%), Positives = 68/150 (45%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF------HVLQ---GRRIFVVG 177
D+EGR V + F L N Y P + + R+ ++++ + H+ + + + + G
Sbjct: 370 DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIKELEKSKPVVLTG 428
Query: 178 DLNIAPAAIDRCD-AGPDFAKN---EFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
DLN A ID + AG + E R F + L++ G F D FR +HP YT W
Sbjct: 429 DLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRKQHPGV-VGYTYW 485
Query: 234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
G + N G R+D+ L + HD
Sbjct: 486 GYRHGGRKTNKGWRLDYFLVSQSIAANVHD 515
Score = 38 (18.4 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 302 LEGSDHAPVYMCL 314
+ GSDH P+ + L
Sbjct: 522 INGSDHCPIGLIL 534
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 125 (49.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL + +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDLNV-EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ GYSG A F + K P S T
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT 78
Score = 118 (46.6 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 44/162 (27%), Positives = 72/162 (44%)
Query: 107 SGSKIMEGLEDFSKDELLKI---DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 163
SG+ I E S L I D EGR + + F + +Y P + R++++++
Sbjct: 64 SGTAIFSKKEPLSVTYGLGIEEHDQEGRVITLEFEDFYIITLYTPNS-KRGLERLEYRMK 122
Query: 164 F---FHVL-----QGRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVE 210
+ F + + + GDLN+A ID + P F+ E R F +L E
Sbjct: 123 WEDDFRAYIKRLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCIL-E 180
Query: 211 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
G F D +R +P++ AY+ W GA N G R+D+ +
Sbjct: 181 EG--FIDTYRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFV 220
Score = 37 (18.1 bits), Expect = 2.9e-13, Sum P(3) = 2.9e-13
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 298 MSTRLEGSDHAPV 310
+++ + GSDH PV
Sbjct: 234 INSEVMGSDHCPV 246
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 134 (52.2 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 53/177 (29%), Positives = 81/177 (45%)
Query: 97 EEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+EG++G+ ++ + K+E D EGR + + F L Y P A S V
Sbjct: 118 KEGYSGVAMLCKTEPLNVTYGIGKEEH---DKEGRVITAEFPDFFLVTAYVPNA-SRGLV 173
Query: 157 RIQFKLQF---FHV----LQGRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNEFR 201
R+ ++ + F L R+ V+ GDLN+A ID R +AG F E R
Sbjct: 174 RLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAG--FTPEE-R 230
Query: 202 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
F + L+E+G F D FR +P++ AYT W A N G R+D+ + + L
Sbjct: 231 EGF-TQLLEAG--FTDSFRELYPDQAYAYTFWTYMMNARSKNVGWRLDYFVLSSALL 284
Score = 112 (44.5 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NV+GLR V + G + D DI+C QETK + L +D+ Y +
Sbjct: 55 MKITSWNVDGLRAWVKKNGL--DWVRKEDPDILCLQETKCAEKALPADITGMPEYPHKY- 111
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ DK GYSGVA C+ + P + T
Sbjct: 112 WAGSEDK--EGYSGVAMLCKTE-PLNVT 136
>GENEDB_PFALCIPARUM|PF14_0285 [details] [associations]
symbol:PF14_0285 "exodeoxyribonuclease III,
putative" species:5833 "Plasmodium falciparum" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 120 (47.3 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 3 IVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADG-- 54
+ ++NVNG ++ L + L D DI+C QETK +++D L+ AD
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 55 YESFFSCTRTS--DKGRTGYSGVATFCR 80
YES+++C + DK GYSG+AT+ +
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK 93
Score = 101 (40.6 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH-----VLQ-----GRRIFVVG 177
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH ++Q G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 178 DLNIA 182
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 468 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 508
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 447 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 506
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 507 NKIPVTD 513
++ + D
Sbjct: 738 DEHKLED 744
>UNIPROTKB|Q8ILF8 [details] [associations]
symbol:PF14_0285 "Exodeoxyribonuclease III, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004536
"deoxyribonuclease activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] Pfam:PF03372 EMBL:AE014187
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004536 HSSP:P27695
RefSeq:XP_001348459.1 ProteinModelPortal:Q8ILF8
EnsemblProtists:PF14_0285:mRNA GeneID:811867 KEGG:pfa:PF14_0285
EuPathDB:PlasmoDB:PF3D7_1430600 HOGENOM:HOG000281251
ProtClustDB:CLSZ2501049 Uniprot:Q8ILF8
Length = 876
Score = 120 (47.3 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 3 IVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADG-- 54
+ ++NVNG ++ L + L D DI+C QETK +++D L+ AD
Sbjct: 6 LASWNVNGWKKSCEIIKRNDDDLVQFLKKLDIDILCLQETKTNESVIENDCNLLEADSNM 65
Query: 55 YESFFSCTRTS--DKGRTGYSGVATFCR 80
YES+++C + DK GYSG+AT+ +
Sbjct: 66 YESYWTCCKKKKGDKTHKGYSGLATYVK 93
Score = 101 (40.6 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH-----VLQ-----GRRIFVVG 177
+EGR +IT H HFI+ N+Y P + + R+ +K++FFH ++Q G I ++G
Sbjct: 176 NEGRILITMHKHFIIVNIYAPYS-GHNYERLYYKVRFFHAVRAKIIQLRIVTGLPIILLG 234
Query: 178 DLNIA 182
D NI+
Sbjct: 235 DFNIS 239
Score = 73 (30.8 bits), Expect = 5.7e-12, Sum P(3) = 5.7e-12
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 468 SNVS---HDDNNSITDTSLNVNNSVTDTSLSQEEVPESH---HHSNK 508
+NVS HD S TD+++NV+N+ D LS + H HH+NK
Sbjct: 354 NNVSDDFHDVFKSPTDSNINVSNNKNDHPLSSTNKDDHHGNNHHNNK 400
Score = 68 (29.0 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
+ D F HP +TCW + N G+RID+I
Sbjct: 607 NMIDTFSFFHPNVNGKFTCWDTYRQCRVHNEGSRIDYI 644
Score = 41 (19.5 bits), Expect = 1.7e-11, Sum P(4) = 1.7e-11
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 447 RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHS 506
+K KK+ L + SF + ++ + L N+++ DTS ++ E
Sbjct: 678 QKLKKKNSLNYHDMNSFQTNQYYANYFNKIKTKQKYLLSNDNINDTSRKKKNKQEKDEEQ 737
Query: 507 NKIPVTD 513
++ + D
Sbjct: 738 DEHKLED 744
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 130 (50.8 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 44/169 (26%), Positives = 79/169 (46%)
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RRIFVV 176
+ D GR + ++ F L NVY P + + V ++ ++++ + Q + + +
Sbjct: 512 EFDDVGRMITAEYEKFYLINVYVPNSGRK-LVNLEPRMRWEKLFQAYVKKLDALKPVVIC 570
Query: 177 GDLNIAPAAIDRCDAGPDFAKNE-FRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCWP 234
GD+N++ ID + + KN F R + E G F D FR +P+R+ AYT W
Sbjct: 571 GDMNVSHMPID-LENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYTFWT 629
Query: 235 SNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 281
A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 630 YMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
Score = 110 (43.8 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 427 LKICSWNVAGLRAWLKKDGL--QLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 484
Query: 61 CTRTSDKGRTGYSGVATFCRV 81
C G GY+GVA + ++
Sbjct: 485 CM----PG--GYAGVAIYSKI 499
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 131 (51.2 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 45/138 (32%), Positives = 65/138 (47%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF--------HVLQ-GRRIFVVG 177
D EGR + + LFN+Y P +D R+ FK+QF+ +L+ G I + G
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPNGQ-KDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 151
Query: 178 DLNIAPAAID----RCDAGPD-FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 232
D+N A ID + +A F E R W +L + G F D FR + E +E Y+
Sbjct: 152 DVNTAHKEIDLTHPKANANTSGFLPIE-RAWIDDLL-KLG--FIDTFREINGEIKEKYSW 207
Query: 233 WPSNTGAEQFNYGTRIDH 250
W A + N G RID+
Sbjct: 208 WSYRMKARERNVGWRIDY 225
Score = 85 (35.0 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 27/89 (30%), Positives = 38/89 (42%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + +L + D I FQE K + + YE F
Sbjct: 8 MKLLSWNVNGLRA-ICDKNALDWIAQE-QIDFIGFQEIKAHEDKFPKKI-----YEYPFK 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTE 89
+ R GYSGV + C S E
Sbjct: 61 HMYFNSAKRAGYSGVMSLCNFNSEVKKCE 89
Score = 39 (18.8 bits), Expect = 9.0e-11, Sum P(3) = 9.0e-11
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 304 GSDHAPV 310
GSDHAPV
Sbjct: 247 GSDHAPV 253
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 120 (47.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 32/99 (32%), Positives = 47/99 (47%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NG+R + L ADI+C QETK + D GY ++
Sbjct: 1 MRIITLNLNGIRAAARR--GFFDWLKRQKADIVCLQETKACLEITNGDQFHPKGYHCYYH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEG 99
D ++GYSGV +CR K +T + A +EG
Sbjct: 59 -----DAEKSGYSGVGIYCREKPDRVTTRLGWEHADKEG 92
Score = 100 (40.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 42/173 (24%), Positives = 75/173 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADS-EDTVRIQFKL------QFFHVLQGRRIFVV-GD 178
D EGR + D G + ++Y P + E +I+F + +++ +R F++ GD
Sbjct: 89 DKEGRYIQADFGSLSVASLYMPSGTTGEHRQKIKFDFMDRYMKRLKNIVHSKRSFIICGD 148
Query: 179 LNIAPAAID--RCDAGPDFAK--NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWP 234
NI ID + ++ E R W + + G D FR + ++ + YT W
Sbjct: 149 WNIVHKEIDIKNFKSNQKYSGCLPEERAWLDEVFTKVG--LVDAFRVVN-QKPDQYTWWS 205
Query: 235 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH--VNECDILIDYKR 285
S A + N G RID+ + K+ ++S + ++IDY+R
Sbjct: 206 SRGRAWEKNVGWRIDYQVITSDL---KNSVKSERIYKDKRFSDHAPLIIDYER 255
>TIGR_CMR|NSE_0415 [details] [associations]
symbol:NSE_0415 "exodeoxyribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
KO:K01142 EMBL:CP000237 GenomeReviews:CP000237_GR
HOGENOM:HOG000034587 GO:GO:0008853 RefSeq:YP_506301.1
ProteinModelPortal:Q2GDZ5 STRING:Q2GDZ5 GeneID:3931772
KEGG:nse:NSE_0415 PATRIC:22680889 OMA:EKAFSWW
ProtClustDB:CLSK2528138 BioCyc:NSEN222891:GHFU-437-MONOMER
Uniprot:Q2GDZ5
Length = 265
Score = 137 (53.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 52/150 (34%), Positives = 72/150 (48%)
Query: 121 DELLKIDSEGRC---VITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFFHVLQGRRI--F 174
DE+ +D E R VI+ I L ++Y P A + + R ++K+QF L RRI +
Sbjct: 84 DEIY-MDGEARYIEGVISFFDKCIRLISIYIPNAQAAGSPRFEYKMQFHDAL-ARRIHGY 141
Query: 175 VV---------GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHP 224
++ GD+N AP ID D F I RS L E FD FR K+P
Sbjct: 142 LLNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERSKLRELLNLGLFDTFRMKYP 201
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++E ++ W G Q N G RIDHIL +
Sbjct: 202 TKQE-FSWWDYRGGGLQRNEGMRIDHILAS 230
Score = 80 (33.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/80 (28%), Positives = 37/80 (46%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ T+NVN +RQR ++ LL S + D++ QE K + + + Y
Sbjct: 7 LKVATWNVNSIRQRAE---AVSALLVSENLDVLLLQELKCQESDFPLHVFNDLSYNVILK 63
Query: 61 CTRTSDKGRTGYSGVATFCR 80
C + GY+GVA R
Sbjct: 64 CQK-------GYNGVAIASR 76
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 117 (46.2 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 38/142 (26%), Positives = 64/142 (45%)
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHV-LQG--------RRI 173
+ K D+EGR + ++ F + N Y P A + R+ ++++ + V Q + I
Sbjct: 188 IAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPI 247
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 230
GDLN+A ID + + F I R S +E G + D +R +P + +Y
Sbjct: 248 IWCGDLNVAHTEIDLKNPKTNKKSAGFTIEERTSFSNFLEKG--YVDSYRHFNPGKEGSY 305
Query: 231 TCWPSNTGAEQFNYGTRIDHIL 252
T W G N G R+D+ +
Sbjct: 306 TFWSYLGGGRSKNVGWRLDYFV 327
Score = 102 (41.0 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NV G + +S+ + ++ + D++C QETK+ +K D M GYE F
Sbjct: 105 MKIISWNVAGFKSVLSK--GFTEYVEKENPDVLCLQETKINPSNIKKDQ-MPKGYEYHF- 160
Query: 61 CTRTSDKGRTGYSGVAT 77
KG G +GV T
Sbjct: 161 -IEADQKGHHG-TGVLT 175
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 300 TRLEGSDHAPV 310
T + GSDH P+
Sbjct: 344 TSVMGSDHCPI 354
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 120 (47.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 49/171 (28%), Positives = 74/171 (43%)
Query: 97 EEGFTG--LLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
+EG++G LL K+ G+ + D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCLKVSYGIGEEEHDQ------EGRVIVAEFDAFVLVTAYVPNA-GRG 177
Query: 155 TVRIQFKLQ----FFHVLQG----RRIFVVGDLNIAPAAID-RCDAG----PDFAKNEFR 201
VR++++ + F L+G + + + GDLN+A ID R G F E R
Sbjct: 178 LVRLEYRQRWDEAFRKFLKGLASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-R 236
Query: 202 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
F +L D FR +P AYT W A N G R+D+ L
Sbjct: 237 QGFGELL--QAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFL 285
Score = 91 (37.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELSGLPHQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 120 SAP--SDK--EGYSGVGLLSR 136
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 120 (47.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 45/139 (32%), Positives = 59/139 (42%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRRIFVV-GD 178
D EGR ++ + FIL Y P A VR++++ + F L R+ V+ GD
Sbjct: 151 DQEGRVIVAEFESFILVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGD 209
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F ML D FR +P AYT W
Sbjct: 210 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGEML--QAVPLADSFRHLYPNTAYAYTFW 266
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 267 TYMMNARSKNVGWRLDYFL 285
Score = 90 (36.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 119 (46.9 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 44/139 (31%), Positives = 62/139 (44%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG---RRIFVV-GD 178
D EGR ++ ++ F+L Y P A VR++++ + F L+G R+ V+ GD
Sbjct: 152 DQEGRVIVAEYDAFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTAYAYTFW 267
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 88 (36.0 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L +L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPVELQELSGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 117 (46.2 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 52/172 (30%), Positives = 75/172 (43%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 177
Query: 154 DTVRIQFKLQ----FFHVLQG---RRIFVV-GDLNIAPAAID-RCDAG----PDFAKNEF 200
VR++++ + F L+G R+ V+ GDLN+A ID R G F E
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE- 236
Query: 201 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
R F +L D FR +P AYT W A N G R+D+ L
Sbjct: 237 RQGFGELL--QAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 117 (46.2 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 44/139 (31%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG---RRIFVV-GD 178
D EGR ++ + F+L Y P A VR++++ + F L+G R+ V+ GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGD 210
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 116 (45.9 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 43/139 (30%), Positives = 59/139 (42%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRRIFVV-GD 178
D EGR ++ + F+L Y P A VR++++ + F L R+ V+ GD
Sbjct: 151 DQEGRVIVAEFESFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKDLASRKPLVLCGD 209
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 210 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAYTFW 266
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 267 TYMMNARSKNVGWRLDYFL 285
Score = 90 (36.7 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 116 (45.9 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 44/139 (31%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG---RRIFVV-GD 178
D EGR ++ + F+L Y P A VR++++ + F L+G R+ V+ GD
Sbjct: 152 DQEGRVIVAEFDTFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTAYAYTFW 267
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLPHQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 120 SAP--SDK--EGYSGVGLLSR 136
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 116 (45.9 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 44/139 (31%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG---RRIFVV-GD 178
D EGR ++ + F+L Y P A VR++++ + F L+G R+ V+ GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 116 (45.9 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 44/139 (31%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG---RRIFVV-GD 178
D EGR ++ + F+L Y P A VR++++ + F L+G R+ V+ GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGD 210
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 90 (36.7 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 116 (45.9 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 43/139 (30%), Positives = 59/139 (42%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRRIFVV-GD 178
D EGR ++ + F+L Y P A VR++++ +F L R+ V+ GD
Sbjct: 151 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDKAFCKFLKDLASRKPLVLCGD 209
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 210 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLTDSFRHLYPNTPYAYTFW 266
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 267 TYMMNARAKNVGWRLDYFL 285
Score = 89 (36.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 61 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQDLPGLTHQYW 118
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S SDK GYSGV R
Sbjct: 119 SAP--SDK--EGYSGVGLLSR 135
>UNIPROTKB|K7GNL1 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726 Pfam:PF03372
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
GeneTree:ENSGT00530000063540 EMBL:CU856438
Ensembl:ENSSSCT00000035798 Uniprot:K7GNL1
Length = 89
Score = 137 (53.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYS 73
+ +GY S+FS +R R+GYS
Sbjct: 62 IIEGYNSYFSFSRN----RSGYS 80
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 117 (46.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 44/139 (31%), Positives = 61/139 (43%)
Query: 127 DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG---RRIFVV-GD 178
D EGR ++ + F+L Y P A VR++++ + F L+G R+ V+ GD
Sbjct: 152 DQEGRVIVAEFDSFVLVTAYVPNA-GRGLVRLEYRQRWDEAFRRFLKGLASRKPLVLCGD 210
Query: 179 LNIAPAAID-RCDAG----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
LN+A ID R G F E R F +L D FR +P AYT W
Sbjct: 211 LNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELL--QAVPLADSFRHLYPNTPYAYTFW 267
Query: 234 PSNTGAEQFNYGTRIDHIL 252
A N G R+D+ L
Sbjct: 268 TYMMNARSKNVGWRLDYFL 286
Score = 84 (34.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE-SFF 59
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G ++
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSYQYW 119
Query: 60 SCTRTSDKGRTGYSGVATFCR 80
S + GYSGV R
Sbjct: 120 SAPXXKE----GYSGVGLLSR 136
>TIGR_CMR|SO_3037 [details] [associations]
symbol:SO_3037 "exodeoxyribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372
GO:GO:0003677 GO:GO:0006281 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 RefSeq:NP_718605.1
ProteinModelPortal:Q8ECT7 GeneID:1170722 KEGG:son:SO_3037
PATRIC:23525710 Uniprot:Q8ECT7
Length = 270
Score = 107 (42.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR R+ Q L+ L+DS DII QETK+ + V A GY +
Sbjct: 1 MKIVSFNINGLRSRLHQ---LQALIDSHQPDIIGLQETKVHDEAFPLAEVEAMGYHVHYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTE 89
+ + G S VA +V+ F++ E
Sbjct: 58 GGK-AHYGVAMLSKVAPL-KVQKGFATDE 84
Score = 85 (35.0 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 31/96 (32%), Positives = 45/96 (46%)
Query: 173 IFVVGDLNIAPAAID---------R-CDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
I ++GD+NI+P +D R G + E R W +++ + G D FR
Sbjct: 147 IAIIGDINISPIDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKTL--QDWG-LVDTFRQL 203
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
HP+R E Y+ + + N G RID IL A P L
Sbjct: 204 HPDRSERYSWFDYRSKGFDDNRGLRIDVIL-ATPSL 238
>TIGR_CMR|APH_0505 [details] [associations]
symbol:APH_0505 "exodeoxyribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_505100.1 ProteinModelPortal:Q2GKK1 STRING:Q2GKK1
GeneID:3931256 KEGG:aph:APH_0505 PATRIC:20949650 OMA:DVQIGIP
ProtClustDB:CLSK747329 BioCyc:APHA212042:GHPM-529-MONOMER
Uniprot:Q2GKK1
Length = 273
Score = 145 (56.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 70/271 (25%), Positives = 115/271 (42%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++++T+NVN +R+R+ S+ L D+ QE K ++ + A GY+
Sbjct: 2 IRVITWNVNSIRKRIEHLCSV---LSEHSIDVAMLQEIKCTNEQFPFVELEALGYK---- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C K R G + ++ K P EV +EG LE++GS +S
Sbjct: 55 CYVHGQKSRNGVAIIS-----KLPV--VEVVSYSVLDEGKE--LESAGS--------YSS 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRI------- 173
+E I+ C T + + +VY P ++ +KL+F L+ R +
Sbjct: 98 EESRYIECTLEC--TGNKKIRVVSVYVPNGQEVESETFFYKLKFLEHLKDRLLNIMKTED 155
Query: 174 FVV--GDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAY 230
F++ GD N+AP ID D + F I R+ E D+FR+ R+ +
Sbjct: 156 FLIAGGDFNVAPEEIDVHDPKALDGRLCFHILERAKFREILNNGIVDIFRTFVGIDRKEF 215
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+ W G Q N G RID +L + P + K
Sbjct: 216 SWWNYREGGWQNNRGLRIDALL-SSPQIADK 245
>TIGR_CMR|ECH_0675 [details] [associations]
symbol:ECH_0675 "exodeoxyribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
OMA:EKAFSWW RefSeq:YP_507482.1 ProteinModelPortal:Q2GGF1
STRING:Q2GGF1 GeneID:3927975 KEGG:ech:ECH_0675 PATRIC:20576802
ProtClustDB:CLSK749128 BioCyc:ECHA205920:GJNR-677-MONOMER
Uniprot:Q2GGF1
Length = 281
Score = 144 (55.7 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 80/268 (29%), Positives = 123/268 (45%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NVN +R+R+ + L++S DI QE K ++ V + GY+
Sbjct: 3 LKIATWNVNSIRKRLDHLCNW--LINSA-IDIALLQEIKCTDEQFPFFDVESLGYK---- 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-ETSGSKIMEGLEDFS 119
C K R +GVA R P E+ + + + + L E S + ++
Sbjct: 56 CYVHGQKAR---NGVAIITRY--PIVG-ELVTSIFSSDYKSKLCYELSSENFI-----YN 104
Query: 120 KDELLKIDSEGRCVITDHGHFI-LFNVYGPRADSEDTVRIQFKLQFF-----H---VLQG 170
DE ++ CV+ H I + ++Y P S D+ Q+KL FF H +L+
Sbjct: 105 CDESRYLE----CVVLHHNIKIRIASIYVPNGQSIDSDAFQYKLGFFDQLREHALSLLKK 160
Query: 171 RRIFVVG-DLNIAPAAIDRCDAGP-D----FAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
I ++G D N+AP ID D D F K+E R FRS+L G F D FR +
Sbjct: 161 EEILILGGDYNVAPYPIDVYDPEVMDGKLCFHKSE-REKFRSIL-NLG--FTDSFRVLND 216
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHIL 252
++ ++ W GA Q N G RID++L
Sbjct: 217 YEKK-FSWWNYKAGAWQQNRGLRIDNLL 243
>CGD|CAL0001657 [details] [associations]
symbol:APN2 species:5476 "Candida albicans" [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0034614 "cellular response to reactive oxygen
species" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020848 PROSITE:PS00728
PROSITE:PS51435 CGD:CAL0001657 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
KO:K10772 EMBL:AACQ01000244 EMBL:AACQ01000240 RefSeq:XP_710720.1
RefSeq:XP_710758.1 STRING:Q59LW6 GeneID:3647640 GeneID:3647674
KEGG:cal:CaO19.1836 KEGG:cal:CaO19.9394 Uniprot:Q59LW6
Length = 451
Score = 117 (46.2 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 64/212 (30%), Positives = 91/212 (42%)
Query: 9 NGLRQRVSQFGSLRKLL--DSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSD 66
N L+ F +L LL D + ET L++Q S LV Y+SF S T
Sbjct: 44 NQLKNN-KDFNTLFNLLQADIITLQELKLTETSLQQQ--MSQLVHLSDYKSFISIPVTK- 99
Query: 67 KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS-------KI-------- 111
KG +G + + + AEEG TG L +S S KI
Sbjct: 100 KGYSGVGLFIRNPKSNENKKHRKHLTVIKAEEGITGWLPSSSSSSSSSANKIPYRESANN 159
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ-FKLQFFHVLQ 169
+ G D K L +DSEGRCV + + ++F VY P A+S+ T + F+L F +L
Sbjct: 160 IGGYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVYCP-ANSQCTYDGELFRLTFIKLLL 218
Query: 170 GR-----------RIFVVGDLNIAPAAIDRCD 190
R +I ++GD+NIA ID +
Sbjct: 219 QRCYNLVKLYPQKKIVIMGDINIAIDMIDHAE 250
Score = 110 (43.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 42/123 (34%), Positives = 58/123 (47%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK------LLDSFDADIICFQETKLRRQELK---SDL 49
++ +T+NVNG++ + L+ L + ADII QE KL L+ S L
Sbjct: 24 IRYITFNVNGVKTIFNYHPWNQLKNNKDFNTLFNLLQADIITLQELKLTETSLQQQMSQL 83
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCR-VKSPFSST--EVALPVAAEEGFTGLLET 106
V Y+SF S T + GYSGV F R KS + + + AEEG TG L +
Sbjct: 84 VHLSDYKSFISIPVT----KKGYSGVGLFIRNPKSNENKKHRKHLTVIKAEEGITGWLPS 139
Query: 107 SGS 109
S S
Sbjct: 140 SSS 142
Score = 77 (32.2 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
+D R R + YT W + T A Q N+G+RID IL
Sbjct: 322 YDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLIL 358
Score = 40 (19.1 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 302 LEGSDHAPVY 311
L GSDH PV+
Sbjct: 377 LMGSDHCPVF 386
>TIGR_CMR|GSU_1539 [details] [associations]
symbol:GSU_1539 "exodeoxyribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 OMA:EVNAKRW
ProtClustDB:PRK11756 RefSeq:NP_952590.1 HSSP:P09030
ProteinModelPortal:Q74CY2 SMR:Q74CY2 GeneID:2687378
KEGG:gsu:GSU1539 PATRIC:22025925
BioCyc:GSUL243231:GH27-1521-MONOMER Uniprot:Q74CY2
Length = 271
Score = 99 (39.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR R+ Q L +L+ + DII QETK++ + V A GY +
Sbjct: 1 MKLVSFNVNGLRSRLHQ---LEELVRTHRPDIIGLQETKVQDADFPLAAVQALGYHVIYH 57
Query: 61 CTRT 64
+T
Sbjct: 58 GQKT 61
Score = 72 (30.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 30/92 (32%), Positives = 40/92 (43%)
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF--------FDVFRSKHPER 226
V+GD NIAP D G D AK R S L E F D +R +P+
Sbjct: 149 VMGDFNIAPVDPD-IGIGADNAKRWLRTGKTSFLPEERAWFAALRDWGLHDSYRELYPDI 207
Query: 227 REAYTCWPSNT-GAE-QFNYGTRIDHILCAGP 256
+ ++ + + G E + G RIDHIL P
Sbjct: 208 DDRFSWFDYRSRGFESEPKRGLRIDHILLTRP 239
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 90 (36.7 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 62 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 118
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 119 WSAPSDK--EGYSGVGLLSR 136
Score = 79 (32.9 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 31/102 (30%), Positives = 50/102 (49%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 125 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 177
Query: 154 DTVRIQFKLQ----FFHVLQG---RRIFVV-GDLNIAPAAID 187
VR++++ + F L+G R+ V+ GDLN+A ID
Sbjct: 178 GLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID 219
>UNIPROTKB|E1C286 [details] [associations]
symbol:E1C286 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF01149 Pfam:PF06831 Pfam:PF06839
PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199 PROSITE:PS51066
PROSITE:PS51068 SMART:SM00547 SMART:SM00898 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 OMA:TKDLICF
GeneTree:ENSGT00510000048146 EMBL:AADN02008928 IPI:IPI00592615
Ensembl:ENSGALT00000017443 ArrayExpress:E1C286 Uniprot:E1C286
Length = 600
Score = 110 (43.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 559 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 617
Q + S P C H + CV ++V K GP GR FFVC P E CG+F+WA +K
Sbjct: 542 QWADLSFPFCH-HGKRCVMKMVLKLGPNNGRNFFVC-----PLQK-EKQCGFFQWAENK 593
Score = 64 (27.6 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 462 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 521
+F H +SNV H S+ + VT + S + P S H K T + SVH+
Sbjct: 422 NFSHNQSNVYH----SVISIDKYCSTDVTSAASSSCQEPLSFKHIKKKQKTHHVPSVHQY 477
Query: 522 HG 523
+G
Sbjct: 478 NG 479
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 14/76 (18%), Positives = 35/76 (46%)
Query: 368 ESNSTGDTEDCSENVDRSLN--NY-CDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
E +S+ TE+ ++ D ++N Y C+ + + + G T + + + A +
Sbjct: 344 EVSSSLKTENVEDSADFNINLIKYPCNEFRKPSTEIKINRKAAFGNTTLVLTDLGNKAVL 403
Query: 425 ASHSTITQGSSNHISP 440
++ G S++++P
Sbjct: 404 KGDIQVSDGCSDYVAP 419
>TIGR_CMR|SPO_2509 [details] [associations]
symbol:SPO_2509 "exodeoxyribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006281 GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 KO:K01142 HOGENOM:HOG000034587 GO:GO:0008853
RefSeq:YP_167724.1 ProteinModelPortal:Q5LQI1 GeneID:3194499
KEGG:sil:SPO2509 PATRIC:23378419 OMA:KYPYKLA ProtClustDB:CLSK933885
Uniprot:Q5LQI1
Length = 268
Score = 86 (35.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/93 (27%), Positives = 40/93 (43%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+N+NG++ R +L LDS D+ QE K + ++ GY
Sbjct: 1 MKIATFNINGIKARAE---ALPAWLDSAQPDVALLQEIKSVDESFPREMFEERGYN---- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP 93
G+ G++GVA ++ P LP
Sbjct: 54 ---VETHGQKGFNGVAILSKL--PLEDVSRGLP 81
Score = 78 (32.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 30/82 (36%), Positives = 40/82 (48%)
Query: 175 VVGDLNIAPAAID--RCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ GD NI P A D R +A + A + E R FR +L G F + FR++ + Y
Sbjct: 155 MAGDYNIIPQAEDAKRPEAWREDALFRPESRAAFRRIL-NLG--FTEAFRAR-VQGPGHY 210
Query: 231 TCWPSNTGAEQFNYGTRIDHIL 252
+ W GA N G RIDH L
Sbjct: 211 SFWDYQAGAWNRNDGIRIDHFL 232
>UNIPROTKB|P09030 [details] [associations]
symbol:xthA "exonuclease III" species:83333 "Escherichia
coli K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IDA] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA;IDA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
EchoBASE:EB1066 Pfam:PF03372 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0005622
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 EMBL:X13002
EMBL:M22592 PIR:E64934 RefSeq:NP_416263.1 RefSeq:YP_490010.1
PDB:1AKO PDBsum:1AKO ProteinModelPortal:P09030 SMR:P09030
DIP:DIP-11148N IntAct:P09030 MINT:MINT-1243969 SWISS-2DPAGE:P09030
PaxDb:P09030 PRIDE:P09030 EnsemblBacteria:EBESCT00000001718
EnsemblBacteria:EBESCT00000016194 GeneID:12932910 GeneID:946254
KEGG:ecj:Y75_p1724 KEGG:eco:b1749 PATRIC:32118809 EcoGene:EG11073
HOGENOM:HOG000034587 OMA:EVNAKRW ProtClustDB:PRK11756
BioCyc:EcoCyc:EG11073-MONOMER BioCyc:ECOL316407:JW1738-MONOMER
BioCyc:MetaCyc:EG11073-MONOMER EvolutionaryTrace:P09030
Genevestigator:P09030 GO:GO:0008853 Uniprot:P09030
Length = 268
Score = 93 (37.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++N+NGLR R Q L +++ D+I QETK+ + V GY F+
Sbjct: 1 MKFVSFNINGLRARPHQ---LEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFS 86
G+ G+ GVA + ++P +
Sbjct: 58 -------GQKGHYGVALLTK-ETPIA 75
Score = 70 (29.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 29/118 (24%), Positives = 49/118 (41%)
Query: 156 VRIQFKLQFFHVLQG------RR---IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS 206
++ K QF+ LQ +R + ++GD+NI+P +D G + K R S
Sbjct: 120 IKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD-IGIGEENRKRWLRTGKCS 178
Query: 207 MLVES--------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
L E D FR +P+ + ++ + + N G RID +L + P
Sbjct: 179 FLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQP 236
>UNIPROTKB|F1N383 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0019104 "DNA N-glycosylase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0000405 "bubble DNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0006284 GO:GO:0003684 GO:GO:0008270 GO:GO:0003690
GO:GO:0003697 GO:GO:0003906 GO:GO:0006289 GO:GO:0000405
GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946 IPI:IPI00706576
UniGene:Bt.37835 OMA:TKDLICF GeneTree:ENSGT00510000048146
EMBL:DAAA02060028 Ensembl:ENSBTAT00000007661 Uniprot:F1N383
Length = 606
Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 441 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 492
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 493 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 552
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 553 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 611
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 612 KWA 614
+WA
Sbjct: 546 EWA 548
>UNIPROTKB|Q3MHN7 [details] [associations]
symbol:NEIL3 "Endonuclease 8-like 3" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0000405
"bubble DNA binding" evidence=ISS] [GO:0006284 "base-excision
repair" evidence=ISS] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 GO:GO:0005634
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 eggNOG:COG0266 SUPFAM:SSF81624
SUPFAM:SSF46946 EMBL:BC105168 IPI:IPI00706576 RefSeq:NP_001029662.1
UniGene:Bt.37835 ProteinModelPortal:Q3MHN7 STRING:Q3MHN7
PRIDE:Q3MHN7 GeneID:515343 KEGG:bta:515343 CTD:55247
HOGENOM:HOG000113754 HOVERGEN:HBG052594 InParanoid:Q3MHN7 KO:K10569
OrthoDB:EOG48GW30 NextBio:20871781 Uniprot:Q3MHN7
Length = 606
Score = 125 (49.1 bits), Expect = 0.00025, P = 0.00025
Identities = 49/183 (26%), Positives = 76/183 (41%)
Query: 441 FHVDRARKKA-KKSQLGQ--LSLKSFFHKRSNVSHDDNNS-ITD---TSLNVNNSVTDT- 492
F +A+ K +K+ G L L F +K S + ++++S I D S N +DT
Sbjct: 372 FGKSKAKVKINRKTAFGTTTLVLTDFSNKHSALEREESHSHIPDGEFPSPPPNVCGSDTL 431
Query: 493 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL 552
+ S+E S+K+ ++ CS ++L + + +N L
Sbjct: 432 NTSKERTNCRSQPSDKVNISPVVCSQYKLFSPAHKKLKTTHYSSPDLKSCNPGFSNSELQ 491
Query: 553 EWRRIQQ-LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 611
L+ P C H PC RVV+K G GR F+ C A EA CG+F
Sbjct: 492 SSMTDGPCLLNAGSPRCSKHGRPCALRVVRKSGENKGRHFYACPLAR------EAQCGFF 545
Query: 612 KWA 614
+WA
Sbjct: 546 EWA 548
>RGD|1310562 [details] [associations]
symbol:Neil3 "nei endonuclease VIII-like 3 (E. coli)"
species:10116 "Rattus norvegicus" [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IEA;ISO] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006284 "base-excision
repair" evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds"
evidence=IEA] [GO:0019104 "DNA N-glycosylase activity"
evidence=ISO] InterPro:IPR000214 InterPro:IPR001876
InterPro:IPR010666 InterPro:IPR010979 InterPro:IPR012319
InterPro:IPR015886 InterPro:IPR015887 Pfam:PF00641 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 RGD:1310562
GO:GO:0005634 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0003690 GO:GO:0003697 GO:GO:0003906 GO:GO:0006289
GO:GO:0000405 GO:GO:0019104 SUPFAM:SSF81624 SUPFAM:SSF46946
OrthoDB:EOG48GW30 GeneTree:ENSGT00510000048146 IPI:IPI00358506
Ensembl:ENSRNOT00000015623 Uniprot:D3ZKJ8
Length = 607
Score = 127 (49.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 561 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ S P CK H PCV RVV+K G GR+F+ C+ G A CG+F+WA
Sbjct: 502 LHASRPQCKTHSRPCVLRVVRKDGENKGRQFYACSLPRG------AQCGFFEWA 549
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 20/103 (19%), Positives = 42/103 (40%)
Query: 449 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNK 508
K + +LG+ S ++F + + I + N N ++ T Q+ +S ++
Sbjct: 261 KIRVCRLGENSRMTYFCPHCQKENPQHVQICQQTANKNAEISWTPKGQDCFTDSVARKSE 320
Query: 509 IPVTDYSCSVHEL-HGVNSSVCSHDQDEKKGKRFLDKERNNVA 550
+SC V L + +++ C + L E N++A
Sbjct: 321 ---EQWSCMVCTLINKPSATACDACLTTRPVDSVLKNEENSIA 360
>ZFIN|ZDB-GENE-041114-18 [details] [associations]
symbol:neil3 "nei endonuclease VIII-like 3 (E.
coli)" species:7955 "Danio rerio" [GO:0016799 "hydrolase activity,
hydrolyzing N-glycosyl compounds" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR000214 InterPro:IPR001876 InterPro:IPR010666
InterPro:IPR010979 InterPro:IPR012319 InterPro:IPR015886
InterPro:IPR015887 Pfam:PF00641 Pfam:PF01149 Pfam:PF06831
Pfam:PF06839 PROSITE:PS01242 PROSITE:PS01358 PROSITE:PS50199
PROSITE:PS51066 PROSITE:PS51068 SMART:SM00547 SMART:SM00898
ZFIN:ZDB-GENE-041114-18 GO:GO:0006284 GO:GO:0003684 GO:GO:0008270
GO:GO:0005622 GO:GO:0003906 GO:GO:0006289 SUPFAM:SSF81624
SUPFAM:SSF46946 GO:GO:0016799 GeneTree:ENSGT00510000048146
EMBL:CR853287 IPI:IPI00837209 Ensembl:ENSDART00000123343
ArrayExpress:F1Q570 Bgee:F1Q570 Uniprot:F1Q570
Length = 577
Score = 123 (48.4 bits), Expect = 0.00038, P = 0.00038
Identities = 44/149 (29%), Positives = 63/149 (42%)
Query: 481 TSLNVN-NSVTDTSLSQEEVPESHH----HSN---KIP---VTDYSCSVHELHGVNSSVC 529
TSL+ +S + ++SQ PE+ H N K P V+ +E + S
Sbjct: 378 TSLSAKPDSPSSPAISQAHTPETMRGLSTHGNWQRKSPSNGVSGMQFKGNEPYK-RESPT 436
Query: 530 SHDQDEKKGKRFLDK-ERNNVALLEWRRIQQLMETSIPL---CKGHKEPCVARVVKKPGP 585
H Q K+ K N+ + R QQ + S+P CK H PC RVV K G
Sbjct: 437 DHSQPNKRMKTTNGTFSGGNIKHISSRGTQQSNDASLPTTPCCKSHHRPCTQRVVTKEGE 496
Query: 586 TFGRRFFVCARAEGPASNPEANCGYFKWA 614
GR+F+ C+ E C +F+WA
Sbjct: 497 NKGRQFYTCSLPR------ETQCNFFEWA 519
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 90 (36.7 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+GLR + + G L + + DI+C QETK +L ++L G +
Sbjct: 45 LKICSWNVDGLRAWIKKKG-LDWVKEEAP-DILCLQETKCSENKLPAELQELPGLSHQY- 101
Query: 61 CTRTSDKGRTGYSGVATFCR 80
+ SDK GYSGV R
Sbjct: 102 WSAPSDK--EGYSGVGLLSR 119
Score = 61 (26.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 97 EEGFTG--LLETSGS-KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+EG++G LL K+ G+ D D+ EGR ++ + F+L Y P A
Sbjct: 108 KEGYSGVGLLSRQCPLKVSYGIGDEEHDQ------EGRVIVAEFDSFVLVTAYVPNA-GR 160
Query: 154 DTVRIQFK 161
VR++++
Sbjct: 161 GLVRLEYR 168
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 113 (44.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 50/208 (24%), Positives = 97/208 (46%)
Query: 81 VKSPFSSTEVALPVAAEE--GFTG---LLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT 135
++ F + L V+ E+ G+ G L + + K+ +G+ D + D+ GR +I
Sbjct: 78 MEETFKNYTKTLVVSTEKNGGYAGVGLLSKCAPMKVHKGIGD------PEFDTAGRLIIA 131
Query: 136 DHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRRIFVVGDLNIAPAAID 187
+ F Y P + ++ V ++ + ++ +L + + + GDLN+A ID
Sbjct: 132 EFSKFYFIGAYVPNSGAK-LVNLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNVAHNEID 190
Query: 188 RCDAGPDFAKNE---F----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAE 240
P+ +N+ F R WF ML E G F D FR+ HP+ ++ Y+ W +
Sbjct: 191 L--KNPESNRNKTAGFTDQERGWFSEML-ELG--FTDTFRAMHPDEKK-YSFWSYLANSR 244
Query: 241 QFNYGTRIDHILCAGPCLHQ--KHDLQS 266
Q + G R+D+ + + +++ + D+ S
Sbjct: 245 QKDVGWRLDYYVVSNRIMNKVKRSDIMS 272
Score = 43 (20.2 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 304 GSDHAPVYM 312
GSDHAPV M
Sbjct: 276 GSDHAPVVM 284
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 621 621 0.00089 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 624 (66 KB)
Total size of DFA: 367 KB (2181 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.26u 0.13s 60.39t Elapsed: 00:00:02
Total cpu time: 60.27u 0.13s 60.40t Elapsed: 00:00:02
Start: Sat May 11 11:15:21 2013 End: Sat May 11 11:15:23 2013